BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003868
         (790 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score = 1259 bits (3257), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/799 (75%), Positives = 692/799 (86%), Gaps = 9/799 (1%)

Query: 1   MMMKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIY 60
           M M+NA  +R LAN+YA+QLQ C P NP++ S+AR+VHAHMI+SGFKPR +I+NRLID+Y
Sbjct: 1   MDMRNAANVRRLANQYAAQLQQCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVY 60

Query: 61  CKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAM 120
           CKS  LV A  LFDEI QPDIVARTTLIAA+S++ N  LARE+F  TPL +RDTV YNAM
Sbjct: 61  CKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAM 120

Query: 121 ITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSG 180
           IT YSHN++G  AIELFRD+ R+  +PDNFTFTSVL ALALIVE+EKQC Q+HC VVKSG
Sbjct: 121 ITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSG 180

Query: 181 TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY 240
           +G  TSVLNAL+SV+VKC SSP VSS SLM AAR++FDEM ERDELSWTTM+ GYV+N  
Sbjct: 181 SGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGE 240

Query: 241 LDAAREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISA 291
           LDAAR+FLDGM+E + VAWNA+ISGYVH            KM +L IQ DEFTYTSV+SA
Sbjct: 241 LDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSA 300

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           CAN+G F  GKQVHAY+LRTE +P+ +FSL VNNAL TLYWKCGKV+EAR +FNQMP +D
Sbjct: 301 CANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKD 360

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
           LVSWNAILS YV+AG IDEAKS FE M ERNLL+WTVMISGLAQNG+GEE LKLF++M+ 
Sbjct: 361 LVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKS 420

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
           EGF+PCDYAFAGAI +CA L AL +GRQLHAQLV  G+DSSLSAGNALITMYA+CGVVEA
Sbjct: 421 EGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEA 480

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
           A+C+F TMP +DSVSWNAMIAALGQHG+GA+A+EL+E MLKE ILPDRITFLTVLS C+H
Sbjct: 481 AHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSH 540

Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
           AGLV+EG RYF++M G YGI PGEDHYAR IDLLCRAGKFSEAKD+I+++P +P  PIWE
Sbjct: 541 AGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWE 600

Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
           ALLAGCRIHGN+DLGIQAAE+LF+LMP H GTYVLLSNMYA +GRWDD A+VRKLMRD+G
Sbjct: 601 ALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKG 660

Query: 652 VKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDME 711
           VKKEPGCSWIEV+NKVHVFLVDD  HPE QAVY YLE+L L+MRKLGY+PDTKFVLHDME
Sbjct: 661 VKKEPGCSWIEVENKVHVFLVDDIVHPEVQAVYNYLEELGLKMRKLGYIPDTKFVLHDME 720

Query: 712 SDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVR 771
           S+QKEY LSTHSEKLAV FGL+KLP GATVRV KNLRICGDCHNAFKFMSKVV REIVVR
Sbjct: 721 SEQKEYVLSTHSEKLAVGFGLLKLPLGATVRVFKNLRICGDCHNAFKFMSKVVEREIVVR 780

Query: 772 DGKRFHHFRDGKCSCGDYW 790
           DGKRFHHF++G+CSCG+YW
Sbjct: 781 DGKRFHHFKNGECSCGNYW 799


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score = 1249 bits (3231), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 587/797 (73%), Positives = 687/797 (86%), Gaps = 9/797 (1%)

Query: 3   MKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCK 62
           M   D IRT ANRY S LQ+C  ++PI+ SLAR VHAHMI+SGF+PR HI+NRLIDIY K
Sbjct: 1   MTTPDSIRTAANRYGSLLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSK 60

Query: 63  SLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
           S KL YAR LFDEIPQPDIVARTTLIAAYSA+ ++KL+R++F+ TPL MRD+VFYNAMIT
Sbjct: 61  SSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMIT 120

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTG 182
           AYSHN +GHAAIELF DM+RD+ +PDN+TFTSVL ALAL+ E+EK C Q+HC VVKSGTG
Sbjct: 121 AYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTG 180

Query: 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLD 242
             TSVLNALIS YVKC +SP   S SLM  AR++FDEMP RDELSWTT++TGYVKN+ LD
Sbjct: 181 FVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLD 240

Query: 243 AAREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACA 293
           AA+EFL+G S+ +GVAWNA+ISGY HR L         KM+M +IQLDEFT+TSVIS CA
Sbjct: 241 AAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCA 300

Query: 294 NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV 353
           N+G FRLGK++HAY L+T A P P+ ++PVNNAL+T YWKCGKV+ A++IFN+MPERDLV
Sbjct: 301 NAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLV 360

Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
           SWN ILS YV+   +DEAKS F  M E+N+LSW +MISGLAQ G+ EE LK F++M+L+G
Sbjct: 361 SWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQG 420

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473
           F+PCDYAFAGAI SC+ LG+L++GRQLHAQ+V  GY+SSLSAGNALITMYARCGVV+AA+
Sbjct: 421 FEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAH 480

Query: 474 CVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533
           C+F  MP VD++SWNAMIAALGQHG G +AIEL+E+MLKEGILPDRI+FLTV+SAC+HAG
Sbjct: 481 CLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAG 540

Query: 534 LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEAL 593
           LVKEGR+YF++MH  YG+ P E+HYAR IDLLCRAGKFSEAK+V++S+PF+P APIWEAL
Sbjct: 541 LVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEAL 600

Query: 594 LAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653
           LAGCRIHGNIDLGI+AAE+LF+L P H GTYVLLSNMYA  G+W+D A+VRKLMRDRGVK
Sbjct: 601 LAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVK 660

Query: 654 KEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESD 713
           KEPGCSWIEV+NKVH FLV D  HPE + +Y YLEQLVLEMRK+GYVPDTK VLHD+ESD
Sbjct: 661 KEPGCSWIEVENKVHSFLVGDANHPEVRQIYNYLEQLVLEMRKIGYVPDTKCVLHDVESD 720

Query: 714 QKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDG 773
            KE+ LSTHSEKLAVA+G MKLP GATVRV KNLRICGDCHNAFKFMSKVVGREIVVRDG
Sbjct: 721 LKEHELSTHSEKLAVAYGFMKLPHGATVRVFKNLRICGDCHNAFKFMSKVVGREIVVRDG 780

Query: 774 KRFHHFRDGKCSCGDYW 790
           KRFHHFRDGKCSCGDYW
Sbjct: 781 KRFHHFRDGKCSCGDYW 797


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score = 1184 bits (3062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/797 (70%), Positives = 667/797 (83%), Gaps = 9/797 (1%)

Query: 3   MKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCK 62
           M+N   +R LANRY +QL LC P+N  + SLAR+VH H+I+SGFK R HI+NRLIDIY K
Sbjct: 1   MRNVLDVRVLANRYFAQLNLCCPQNLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWK 60

Query: 63  SLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
           S   VYAR LFDEIPQPD++ARTTLI AYSA  N+K+ARE+FN+TPL MRDTVFYNAMIT
Sbjct: 61  SSDFVYARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMIT 120

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTG 182
            YSH ++GH+AIELFR MR  + +PD+FTF SVLSA  LI  +E+QC QMH TVVK G  
Sbjct: 121 GYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIE 180

Query: 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLD 242
           +F +VLNAL+SVYVKC SSP VSS SLM +AR++FDEMP+R+E  WTT++TGYV+N  L 
Sbjct: 181 IFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLT 240

Query: 243 AAREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACA 293
            ARE LD M+E  G+AWNA+ISGY+H  L         KM +L +Q+DE TYTSVISACA
Sbjct: 241 GAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACA 300

Query: 294 NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV 353
           + G F LGKQVHAY+L+ E  P  +F L V N L+TLYWK GKV+ AR IF +MP +D++
Sbjct: 301 DGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDII 360

Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
           +WN +LS YV+AG ++EAKS F  M E+NLL+WTVMISGLAQNG+GE+ LKLF+QM+L+G
Sbjct: 361 TWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDG 420

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473
           ++P DYAFAGAIT+C+ LGALENGRQLHAQ+VH G+DS+LS GNA+ITMYARCG+VEAA 
Sbjct: 421 YEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAAR 480

Query: 474 CVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533
            +F TMP VD VSWN+MIAALGQHG+G +AIELYEQMLKEGILPDR TFLTVLSAC+HAG
Sbjct: 481 TMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAG 540

Query: 534 LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEAL 593
           LV+EG RYF +M   YGI PGEDHYAR IDL CRAGKFS+AK+VIDS+PF+  APIWEAL
Sbjct: 541 LVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEAL 600

Query: 594 LAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653
           LAGCR HGN+DLGI+AAE+LF+L+P H GTYVLLSNMYA+LGRW+D AR RKLMRDRGVK
Sbjct: 601 LAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVK 660

Query: 654 KEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESD 713
           KEP CSW EV+NKVHVFLVDDT HPE  ++Y YLE+L LEM+K+GY+PDTK+VLHDMES+
Sbjct: 661 KEPACSWTEVENKVHVFLVDDTVHPEVLSIYNYLEKLNLEMKKIGYIPDTKYVLHDMESE 720

Query: 714 QKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDG 773
            KEYALSTHSEKLAVAFGLMKLP GATVRV KNLRICGDCHNA KFMSKVVGREIVVRDG
Sbjct: 721 HKEYALSTHSEKLAVAFGLMKLPQGATVRVFKNLRICGDCHNAIKFMSKVVGREIVVRDG 780

Query: 774 KRFHHFRDGKCSCGDYW 790
           KRFHHF++G+CSC +YW
Sbjct: 781 KRFHHFKNGECSCRNYW 797


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score = 1173 bits (3035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/798 (69%), Positives = 664/798 (83%), Gaps = 11/798 (1%)

Query: 3   MKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCK 62
           M+NA  IR LANRYA +LQLC P++P + SLAR+VHAHMI+SGFKPR H +NRL+++YCK
Sbjct: 1   MRNALDIRLLANRYAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCK 60

Query: 63  SLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
           S  LVYAR LF+EIP PD +ARTTLI AY A  N++L RE+FN TPL MRD+VFYNAMIT
Sbjct: 61  SSNLVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMIT 120

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTG 182
            Y+HN +GH+A+ELFR MRRDD +PD+FTFTSVLSAL L V  E+QC QMHC VVK+G G
Sbjct: 121 GYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMG 180

Query: 183 -LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
            + +SVLNAL+SVYVK  S   +S  S M +AR++FDEMP+RDEL+WTTM+TGYV+ND L
Sbjct: 181 CVSSSVLNALLSVYVKRASELGISC-SAMVSARKLFDEMPKRDELTWTTMITGYVRNDDL 239

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISAC 292
           + ARE  + M EN+G AWNA+ISGYVH            KM  L IQ D+ TYT++ISAC
Sbjct: 240 NGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISAC 299

Query: 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL 352
           AN G F++GKQVHAY+L+ E  P   F L V+NAL+TLY K  KV+EAR IF  MP R++
Sbjct: 300 ANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNI 359

Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
           ++WNAILS YV+AG ++EAKS FE M  +NLL+ TVMISGLAQNG+G+EGLKLF QMRL+
Sbjct: 360 ITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLD 419

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
           GF+PCD+AFAGA+T+C+ LGALENGRQLHAQLVH GY+SSLS GNA+I+MYA+CGVVEAA
Sbjct: 420 GFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAA 479

Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
             VF TMP+VD VSWN+MIAALGQHG+G +AIEL++QMLKEG+ PDRITFLTVL+AC+HA
Sbjct: 480 ESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHA 539

Query: 533 GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592
           GLV++GR YF +M   YGI P EDHYAR +DL CRAG FS A+ VIDS+P KP AP+WEA
Sbjct: 540 GLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEA 599

Query: 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           LLAGCRIHGN+DLGI+AAEQLF+LMP + GTYVLLSN+YA++GRW++ A+VRKLMRD+ V
Sbjct: 600 LLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAV 659

Query: 653 KKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMES 712
           +KEP CSWIEV+NKVHVF+VDD  HPE  +VY+YLEQL LEM+KLGY+PDTKFVLHDME 
Sbjct: 660 RKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEY 719

Query: 713 DQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRD 772
           +QKE+ALSTHSEKLAV FG+MKLP GATVRV KN+RICGDCHNAFKFMSKV  REI+VRD
Sbjct: 720 EQKEHALSTHSEKLAVGFGIMKLPPGATVRVFKNIRICGDCHNAFKFMSKVARREIIVRD 779

Query: 773 GKRFHHFRDGKCSCGDYW 790
            KRFHHF++G CSC DYW
Sbjct: 780 RKRFHHFKNGDCSCRDYW 797


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score = 1166 bits (3017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/798 (68%), Positives = 662/798 (82%), Gaps = 11/798 (1%)

Query: 3   MKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCK 62
           M+NA  IR LANRYA +LQLC P++P + SLAR+VHAHMI+SGFKPR H +NRL+++YCK
Sbjct: 1   MRNALDIRLLANRYAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCK 60

Query: 63  SLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
           S  +VYAR LF+EIP PD +ARTTLI AY A  N++L RE+FN TPL MRD+VFYNAMIT
Sbjct: 61  SSNVVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMIT 120

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTG 182
            Y+HN +GH+A+ELFR MRRDD +PD+FTFTSVLSAL L V  E+QC QMHC VVK+G G
Sbjct: 121 GYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMG 180

Query: 183 -LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
            + +SVLNAL+SVYVK  S   +   S M +AR++FDEMP+RDEL+WTTM+TGYV+ND L
Sbjct: 181 CVSSSVLNALLSVYVKRASELGIPC-SAMVSARKLFDEMPKRDELTWTTMITGYVRNDDL 239

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISAC 292
           + ARE  + M EN+G AWNA+ISGYVH            KM  L IQ D+ TYT++ISAC
Sbjct: 240 NGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISAC 299

Query: 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL 352
           AN G F++GKQ+HAY+L+ E  P   F L V+NAL+TLY K  KV+EAR IF  MP R++
Sbjct: 300 ANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNI 359

Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
           ++WNAILS YV+AG ++EAKS FE M  +NLL+ TVMISGLAQNG+G+EGLKLF QMRL+
Sbjct: 360 ITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLD 419

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
           GF+PCD+AFAGA+T+C+ LGALENGRQLHAQLVH GY+SSLS GNA+I+MYA+CGVVEAA
Sbjct: 420 GFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAA 479

Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
             VF TMP+VD VSWN+MIAALGQHG+G +AIEL++QMLKEG+ PDRITFLTVL+AC+HA
Sbjct: 480 ESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHA 539

Query: 533 GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592
           GLV++GR YF +M   YGI P EDHYAR +DL CRAG FS A+ VIDS+P KP AP+WEA
Sbjct: 540 GLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEA 599

Query: 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           LLAGCRIHGN+DLGI+AAEQLF+LMP + GTYVLLSN+YA++GRW+D A+VRKLMRD+ V
Sbjct: 600 LLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAV 659

Query: 653 KKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMES 712
           +KEP CSWIEV+NKVHVF+VDD  HPE  +VY+YLEQL LEM+KLGY+PDTKFVLHDME 
Sbjct: 660 RKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEY 719

Query: 713 DQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRD 772
           +QKE+ALSTHSEKLAV FG+MKLP  ATVRV KN+RICGDCHNAFKFMSKV  REI+VRD
Sbjct: 720 EQKEHALSTHSEKLAVGFGIMKLPPDATVRVFKNIRICGDCHNAFKFMSKVARREIIVRD 779

Query: 773 GKRFHHFRDGKCSCGDYW 790
            KRFHHF++G CSC DYW
Sbjct: 780 RKRFHHFKNGDCSCRDYW 797


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score = 1127 bits (2916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/790 (67%), Positives = 648/790 (82%), Gaps = 19/790 (2%)

Query: 12  LANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYART 71
           + NRY +QL          +S AR+VHAH+++SGFKP   IINRLID YCKS  + YAR 
Sbjct: 1   MGNRYLAQLS--------HTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARY 52

Query: 72  LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           LFD+IP+PDIVA TT+++AYSA+ N+KLA ++FN TP+ +RDTV YNAMITA+SH+ +GH
Sbjct: 53  LFDKIPKPDIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGH 112

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
           AA++LF  M+R    PD FTF+SVL AL+LI +EE  C Q+HC V K G     SVLNAL
Sbjct: 113 AALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNAL 172

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMP--ERDELSWTTMMTGYVKNDYLDAAREFLD 249
           +S YV C SSP V+S  LM AAR++FDE P   RDE +WTT++ GYV+ND L AARE L+
Sbjct: 173 MSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLE 232

Query: 250 GMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRL 300
           GM++++ VAWNA+ISGYVHR           +M  L IQLDE+TYTSVISA +N+GLF +
Sbjct: 233 GMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNI 292

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           G+QVHAY+LRT  +P+  F L VNNAL+TLY +CGK+ EAR +F++MP +DLVSWNAILS
Sbjct: 293 GRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILS 352

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
             V+A  I+EA S+F  M  R+LL+WTVMISGLAQNG+GEEGLKLF+QM+LEG +PCDYA
Sbjct: 353 GCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYA 412

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
           +AGAI SC+ LG+L+NG+QLH+Q++  G+DSSLS GNALITMY+RCG+VEAA+ VF TMP
Sbjct: 413 YAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMP 472

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
            VDSVSWNAMIAAL QHG+G +AI+LYE+MLKE ILPDRITFLT+LSAC+HAGLVKEGR 
Sbjct: 473 YVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRH 532

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
           YF+TM   YGI P EDHY+R IDLLCRAG FSEAK+V +S+PF+P APIWEALLAGC IH
Sbjct: 533 YFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIH 592

Query: 601 GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSW 660
           GN++LGIQAA++L +LMP   GTY+ LSNMYA LG+WD+ ARVRKLMR+RGVKKEPGCSW
Sbjct: 593 GNMELGIQAADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSW 652

Query: 661 IEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALS 720
           IEV+N VHVFLVDD  HPE  AVY+YLEQLV EMRKLGYVPDTKFVLHDMES+QKEYALS
Sbjct: 653 IEVENMVHVFLVDDAVHPEVHAVYRYLEQLVHEMRKLGYVPDTKFVLHDMESEQKEYALS 712

Query: 721 THSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFR 780
           THSEKLAV +G+MKLP GAT+RV KNLRICGDCHNAFK++SKVV REI+VRD KRFHHFR
Sbjct: 713 THSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYISKVVDREIIVRDRKRFHHFR 772

Query: 781 DGKCSCGDYW 790
           +G+CSC +YW
Sbjct: 773 NGECSCSNYW 782


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score = 1113 bits (2879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/797 (65%), Positives = 644/797 (80%), Gaps = 19/797 (2%)

Query: 9   IRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVY 68
           +R LA RY +QL         T  +AR+VHAH+++SGFKP   I+NRLI+IYCKS  + Y
Sbjct: 3   VRDLAYRYLTQLN----HVSTTQIIARAVHAHILTSGFKPNTFILNRLINIYCKSSNITY 58

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           AR LFD+IP+PDIVARTTL++AYS+S NVKLA+++FN TPL +RDTV YNAMITAYSH +
Sbjct: 59  ARKLFDKIPKPDIVARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGN 118

Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL 188
           +GHAA+ LF  M+R    PD FTF+SVLSAL+LI +EE+ C  +HC V+K GT L  SV 
Sbjct: 119 DGHAALNLFVQMKRYGFLPDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVT 178

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERD--ELSWTTMMTGYVKNDYLDAARE 246
           NAL+S YV C SSP V S  LM +AR+VFDE P+    E SWTTM+ GYV+ND L AARE
Sbjct: 179 NALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARE 238

Query: 247 FLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANS-- 295
            LDG++  + VAWNA+ISGYV R L         +M  + IQ DE+TYTS+ISAC +   
Sbjct: 239 LLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNE 298

Query: 296 --GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV 353
             G+F  G+QVH Y+LRT  +P+  F L VNNAL+T Y K  ++ EAR +F++MP RD++
Sbjct: 299 KMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDII 358

Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
           SWNA+LS YV+A  I+EA S+F  M ERN+L+WTVMISGLAQNG+GEEGLKLF+QM+ EG
Sbjct: 359 SWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEG 418

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473
            +PCDYAFAGAIT+C+ LG+L+NG+Q+H+Q++  G+DS LSAGNALITMY+RCGVVE+A 
Sbjct: 419 LEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAE 478

Query: 474 CVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533
            VF TMP VDSVSWNAMIAAL QHG+G +AIEL+EQM+KE ILPDRITFLT+L+ACNHAG
Sbjct: 479 SVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAG 538

Query: 534 LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEAL 593
           L+KEGR YF+TM   YGI PGEDHYAR IDLLCRAG F +A+ VI S+PF+  APIWEAL
Sbjct: 539 LIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEAL 598

Query: 594 LAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653
           LAGCRIHGN++LGIQAA++L +L+P   GTY++LSNMYA LG+WD+ ARVR LMR+RGVK
Sbjct: 599 LAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVK 658

Query: 654 KEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESD 713
           KEPGCSW+EV+N VHVFLVDD  HPE QAVY YL+QLV EM+KLGYVPDTKFVLHDMES+
Sbjct: 659 KEPGCSWVEVENMVHVFLVDDARHPEVQAVYTYLQQLVNEMKKLGYVPDTKFVLHDMESE 718

Query: 714 QKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDG 773
            KE++LSTHSEKLAV +G+MKLP GAT+RV KNLRICGDCHNAFK++SKVV REIVVRD 
Sbjct: 719 HKEHSLSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYISKVVEREIVVRDR 778

Query: 774 KRFHHFRDGKCSCGDYW 790
           KRFHHF++G+CSCG+YW
Sbjct: 779 KRFHHFKNGECSCGNYW 795


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score = 1094 bits (2829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/800 (64%), Positives = 644/800 (80%), Gaps = 21/800 (2%)

Query: 2   MMKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYC 61
           M  N D +R +ANRYA+ L+LC P    +  LAR+VH ++I+ GF+P  HI+NRLID+YC
Sbjct: 1   MQPNPDLVRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYC 60

Query: 62  KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMI 121
           KS +L YAR LFDEI +PD +ARTT+++ Y AS ++ LAR +F +TP+ MRDTV YNAMI
Sbjct: 61  KSSELDYARQLFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMI 120

Query: 122 TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGT 181
           T +SHN++G++AI LF  M+ +  KPD+FT+ SVL+ LAL+V++EKQC+Q H   +KSG 
Sbjct: 121 TGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGA 180

Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
           G  TSV NAL+SVY +C SSP     SL+ +AR+VFD++PE+DE SWTTMMTGYVKN   
Sbjct: 181 GYVTSVSNALVSVYSRCASSP-----SLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCF 235

Query: 242 DAAREFLDGMSENVG-VAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISA 291
           D  +E L GM EN+  VA+NA+ISGYV+  L         +M+   I+LDEFTY SVI A
Sbjct: 236 DLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRA 295

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           CAN+ L +LGKQVHAY+LR E     +FS   +N+LVTLY+KCGK NEAR IF +MP +D
Sbjct: 296 CANARLLQLGKQVHAYVLRRE-----DFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKD 350

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
           LVSWNA+LS YVS+G I EAK +F+ M+E+N+LSW +MISGLA+NG+GEEGLKLFS M+ 
Sbjct: 351 LVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKR 410

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
           EGF+PCDYAF+GAI SCA LGA  NG+Q HAQLV  G+DSSLSAGNALITMYA+CGVVE 
Sbjct: 411 EGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEE 470

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
           A  VF TMP +DSVSWNA+IAALGQHG+G  A+++YE+MLK+GI PDRITFLTVL+AC+H
Sbjct: 471 AQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSH 530

Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
           AGLV +GR+YF +M   Y IPPG DHYAR IDLLCR+GKFSEA+ +I+SLPFKP+A IWE
Sbjct: 531 AGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWE 590

Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
           ALL+GCR+HGN++LGI AA++LF L+P H GTY+LLSNMYA  G+W++ ARVRKLMRDRG
Sbjct: 591 ALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRG 650

Query: 652 VKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDME 711
           VKKE  CSWIE++ +VH FLVDDT+HPEA+AVYKYL+ L  EMR+LGYVPDT FVLHD+E
Sbjct: 651 VKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYKYLQDLGKEMRRLGYVPDTSFVLHDVE 710

Query: 712 SD-QKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVV 770
           SD  KE  L+THSEK+AVAFGLMKLP G T+R+ KNLR CGDCHN F+F+SKVV R+I++
Sbjct: 711 SDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSKVVQRDIIL 770

Query: 771 RDGKRFHHFRDGKCSCGDYW 790
           RD KRFHHFR+G+CSCG++W
Sbjct: 771 RDRKRFHHFRNGECSCGNFW 790


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score = 1083 bits (2802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/800 (64%), Positives = 642/800 (80%), Gaps = 21/800 (2%)

Query: 2   MMKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYC 61
           M  N D +R +ANRYA+ L+LC P    +  LAR+VH ++I+ GF+PR HI+NRLID+YC
Sbjct: 1   MQPNPDLVRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYC 60

Query: 62  KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMI 121
           KS +L YAR LFDEI +PD +ARTT+++ Y AS ++ LAR +F K P+ MRDTV YNAMI
Sbjct: 61  KSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMI 120

Query: 122 TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGT 181
           T +SHN++G++AI LF  M+ +  KPDNFTF SVL+ LAL+ ++EKQC+Q H   +KSG 
Sbjct: 121 TGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGA 180

Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
           G  TSV NAL+SVY KC SSP     SL+ +AR+VFDE+ E+DE SWTTMMTGYVKN Y 
Sbjct: 181 GYITSVSNALVSVYSKCASSP-----SLLHSARKVFDEILEKDERSWTTMMTGYVKNGYF 235

Query: 242 DAAREFLDGMSENVG-VAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISA 291
           D   E L+GM +N+  VA+NA+ISGYV+R           +M+   I+LDEFTY SVI A
Sbjct: 236 DLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRA 295

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           CA +GL +LGKQVHAY+LR E     +FS   +N+LV+LY+KCGK +EAR IF +MP +D
Sbjct: 296 CATAGLLQLGKQVHAYVLRRE-----DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKD 350

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
           LVSWNA+LS YVS+G I EAK +F+ M+E+N+LSW +MISGLA+NG+GEEGLKLFS M+ 
Sbjct: 351 LVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKR 410

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
           EGF+PCDYAF+GAI SCA LGA  NG+Q HAQL+  G+DSSLSAGNALITMYA+CGVVE 
Sbjct: 411 EGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEE 470

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
           A  VF TMP +DSVSWNA+IAALGQHG+GA A+++YE+MLK+GI PDRIT LTVL+AC+H
Sbjct: 471 ARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSH 530

Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
           AGLV +GR+YF++M   Y IPPG DHYAR IDLLCR+GKFS+A+ VI+SLPFKP+A IWE
Sbjct: 531 AGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWE 590

Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
           ALL+GCR+HGN++LGI AA++LF L+P H GTY+LLSNM+A  G+W++ ARVRKLMRDRG
Sbjct: 591 ALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRG 650

Query: 652 VKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDME 711
           VKKE  CSWIE++ +VH FLVDDT+HPEA+AVY YL+ L  EMR+LGYVPDT FVLHD+E
Sbjct: 651 VKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVE 710

Query: 712 SD-QKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVV 770
           SD  KE  L+THSEK+AVAFGLMKLP G T+R+ KNLR CGDCHN F+F+S VV R+I++
Sbjct: 711 SDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIIL 770

Query: 771 RDGKRFHHFRDGKCSCGDYW 790
           RD KRFHHFR+G+CSCG++W
Sbjct: 771 RDRKRFHHFRNGECSCGNFW 790


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  880 bits (2273), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/787 (54%), Positives = 559/787 (71%), Gaps = 25/787 (3%)

Query: 21  QLCDPRNPITSSLARSV---HAHMISSGF---KPREHIINRLIDIYCKSLKLVYARTLFD 74
           +L   R+  +SS  R++   HA +++S      P  H+  RLI +Y  S  L  A TLF 
Sbjct: 24  RLAASRSLTSSSFLRALRCLHARLLTSALLHAPPHPHLTLRLIHLYTLSGDLPAAATLFR 83

Query: 75  EIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAI 134
             P P  VA T+L+AAY+A+  +  A   F+  P   RDTV +NA+I+AY+  S+   A+
Sbjct: 84  ADPCP--VAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAV 141

Query: 135 ELFRDM-RRDDVKPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALI 192
            +FR +     ++PD+++FT++LSA   +     + C Q+ C+V+KSG G   SV NAL+
Sbjct: 142 AVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALV 201

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
           ++Y+KC +    ++R     AR+V DEMP++D L+WTTM+ GYV+   + AAR   + + 
Sbjct: 202 ALYMKCEA--LEATRD----ARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVD 255

Query: 253 ENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQ 303
               V WNA+ISGYVH  +         +M++ R+ LDEFT+TSV+SACAN+G F  GK 
Sbjct: 256 VKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKS 315

Query: 304 VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV 363
           VH  + R +    PE +LPVNNALVTLY KCG +  AR IF+ M  +D+VSWN ILS YV
Sbjct: 316 VHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYV 375

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
            +  +D+A  +FE M  +N LSW VM+SG    G+ E+ LKLF++MR E  KPCDY +AG
Sbjct: 376 ESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAG 435

Query: 424 AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
           AI++C  LG+L++G+QLH  LV  G++ S SAGNALITMYARCG V+ AN +F  MPN+D
Sbjct: 436 AISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNID 495

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFE 543
           SVSWNAMI+ALGQHG+G  A+EL+++M+ EGI PDRI+FLTVL+ACNH+GLV EG +YFE
Sbjct: 496 SVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFE 555

Query: 544 TMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNI 603
           +M   +GI PGEDHY R IDLL RAG+  EA+D+I ++PF+P+  IWEA+L+GCR  G++
Sbjct: 556 SMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDM 615

Query: 604 DLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEV 663
           +LG  AA+QLF++ P H GTY+LLSN Y+  GRW DAARVRKLMRDRGVKKEPGCSWIE 
Sbjct: 616 ELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEA 675

Query: 664 DNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHS 723
            NKVHVF+V DT HPEA  VYK+LE +   MRKLGYVPDTK VLHDME  QKE+ L  HS
Sbjct: 676 GNKVHVFVVGDTKHPEAHKVYKFLEMVGARMRKLGYVPDTKVVLHDMEPHQKEHILFAHS 735

Query: 724 EKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGK 783
           E+LAV FGL+KLP GATV VLKNLRIC DCH    FMSK VGREIVVRD +RFHHF+DG+
Sbjct: 736 ERLAVGFGLLKLPPGATVTVLKNLRICDDCHAVMMFMSKAVGREIVVRDVRRFHHFKDGE 795

Query: 784 CSCGDYW 790
           CSCG+YW
Sbjct: 796 CSCGNYW 802


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  878 bits (2269), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/770 (55%), Positives = 552/770 (71%), Gaps = 22/770 (2%)

Query: 35  RSVHAHMISSGF---KPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           R +HA +++S      P  H+  RLI +Y  S  L  A TLF   P P  V+ T+L+AAY
Sbjct: 41  RCLHARLLTSALLHAPPHPHLTLRLIHLYTLSRDLPAAATLFCADPCP--VSATSLVAAY 98

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM-RRDDVKPDNF 150
           +A+D +  A   F+  P   RDTV +NA+I+AY+  S+   A+ +FR +     ++PD++
Sbjct: 99  AAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDY 158

Query: 151 TFTSVLSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           +FT++LSA   +     + C Q+HC+V+KSG G   SV NAL+++Y+KC S    ++R  
Sbjct: 159 SFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPE--ATRD- 215

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
              AR+V DEMP +D+L+WTTM+ GYV+   + AAR   + +     V WNA+ISGYVH 
Sbjct: 216 ---ARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHS 272

Query: 270 EL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
            +         +M++ R+ LDEFT+TSV+SACAN GLF  GK VH  ++R +    PE +
Sbjct: 273 GMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAA 332

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           LPVNNALVT Y KCG +  AR IF+ M  +D+VSWN ILS YV +  +D+A  +FE M  
Sbjct: 333 LPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPY 392

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
           +N LSW VM+SG    G+ E+ LKLF++MR E  KPCDY +AGAI +C  LGAL++G+QL
Sbjct: 393 KNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQL 452

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           H  +V  G++ S SAGNALITMYARCG V+ A+ +F  MPN+DSVSWNAMI+ALGQHG+G
Sbjct: 453 HGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHG 512

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
             A+EL+++M+ EGI PDRI+FLTVL+ACNH+GLV EG RYFE+M   +GI PGEDHY R
Sbjct: 513 REALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTR 572

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
            IDLL RAG+  EA+D+I ++PF+P+  IWEA+L+GCR  G+++LG  AA+QLF++ P H
Sbjct: 573 LIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQH 632

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEA 680
            GTY+LLSN Y+  G W DAARVRKLMRDRGVKKEPGCSWIE  NKVHVFLV DT HPEA
Sbjct: 633 DGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEA 692

Query: 681 QAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT 740
             VYK+LE +  +MRKLGYVPDTK VLHDME  QKE+ L  HSE+LAV FGL+ LP GAT
Sbjct: 693 HEVYKFLEMVGAKMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLNLPPGAT 752

Query: 741 VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           V VLKNLRIC DCH A  FMSK VGREIVVRD +RFHHF+DG+CSCG+YW
Sbjct: 753 VTVLKNLRICDDCHAAIMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  874 bits (2258), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/798 (53%), Positives = 564/798 (70%), Gaps = 27/798 (3%)

Query: 9   IRTLANRYASQLQLCDPRNPITSSL--ARSVHAHMISSGF---KPREHIINRLIDIYCKS 63
           +R LA R++       P  P +S L   R +HA ++++         H+  RLI +Y  S
Sbjct: 22  LRRLAERHSPA-----PTCPSSSFLRALRCLHARLLTADLLHAPSHPHLTLRLIHLYTLS 76

Query: 64  LKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITA 123
             L     LF   P P  VA T+L+AA++A+  ++ A   F+  P   RDTV +NAM++A
Sbjct: 77  PDLATPAALFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSA 136

Query: 124 YSHNSNGHAAIELFRDM-RRDDVKPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKSGT 181
           ++  S    A+ +F  +     ++PD+++FT+++SA+  +       C Q+HC+V+KSG 
Sbjct: 137 FARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGA 196

Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
               SV NALI++Y+KC  +P  S       AR+V DEMP++D+L+WTTM+ GYV+   +
Sbjct: 197 AAVLSVSNALIALYMKC-DTPEASWD-----ARKVLDEMPDKDDLTWTTMVVGYVRRGDV 250

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISAC 292
           +AAR   + +     V WNA+ISGYV   +         +M+  ++ LDEFT+TSV+SAC
Sbjct: 251 NAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSAC 310

Query: 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL 352
           AN+G F  GK VH  ++R +    PE +LPVNNALVTLY K GK+  A+ IF+ M  +D+
Sbjct: 311 ANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDV 370

Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
           VSWN ILS Y+ +G +D+A  +F+ M  +N LSW VM+SG    G  E+ LKLF+QMR E
Sbjct: 371 VSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAE 430

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
             KPCDY +AGAI +C  LGAL++GRQLHA LV  G+++S SAGNAL+TMYA+CG V  A
Sbjct: 431 DVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDA 490

Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
             VF  MPN+DSVSWNAMI+ALGQHG+G  A+EL++QM+ EGI PDRI+FLT+L+ACNHA
Sbjct: 491 RLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHA 550

Query: 533 GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592
           GLV EG  YFE+M   +GI PGEDHYAR IDLL R+G+  EA+D+I ++PF+P+  IWEA
Sbjct: 551 GLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEA 610

Query: 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           +L+GCR +G+++ G  AA+QLF+++P H GTY+LLSN Y+  GRW DAARVRKLMRDRGV
Sbjct: 611 ILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGV 670

Query: 653 KKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMES 712
           KKEPGCSWIEV +K+HVFLV DT HPEAQ VY++LE +   MRKLGYVPDTKFVLHDME 
Sbjct: 671 KKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEP 730

Query: 713 DQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRD 772
            +KEY L  HSEKLAV FGL+KLP GATV VLKNLRICGDCH A  FMSK VGREIVVRD
Sbjct: 731 HEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRD 790

Query: 773 GKRFHHFRDGKCSCGDYW 790
            +RFHHF+DG+CSCG+YW
Sbjct: 791 VRRFHHFKDGECSCGNYW 808


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  865 bits (2236), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/771 (54%), Positives = 551/771 (71%), Gaps = 23/771 (2%)

Query: 35  RSVHAHMISSGF---KPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           R +HA ++++         H+  RL+ +Y  S  L     LF   P P  VA T+L++AY
Sbjct: 42  RCLHARLLTAALLHDPSHPHLTLRLLHLYTLSPDLATPAVLFRADPGP--VAATSLVSAY 99

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM--RRDDVKPDN 149
           + +  ++ +   F+  P+  RDTV +NAMI+A++  S    A+ +FR +    D ++PD+
Sbjct: 100 AVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASDDSLRPDD 159

Query: 150 FTFTSVLSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
           ++FTS+LSA+  + +     C Q+HC V K G G   SV NALI++Y+KC  +P V+   
Sbjct: 160 YSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKC-DAPGVTRD- 217

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
               AR+V DEMPE+DEL+WTT++ G+V+   + AAR   + +     V WNA+ISGYV 
Sbjct: 218 ----ARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQ 273

Query: 269 REL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
             +         +M+  RI  DEFT+TS++SACAN+G F  GK VH   +R +    PE 
Sbjct: 274 SGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEA 333

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
           +LPVNNALVTLY K GK+  A  IF+ M  +D+VSWN ILS Y+ +G +D A  +F+ M 
Sbjct: 334 ALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMP 393

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
            ++ LSW VM+SG    G  E+ LKLF+QMR E  KPCDY +AGA+ +C  LGAL++G+Q
Sbjct: 394 YKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQ 453

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           LHA LV  G+++S SAGNAL+TMYARCG V+ A  VF  MPNVDSVSWNAMI+ALGQHG+
Sbjct: 454 LHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGH 513

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA 559
           G  A+EL++QM+ +GI PDRI+FLT+L+ACNHAGLV +G +YFE+M   +GI PGEDHYA
Sbjct: 514 GREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYA 573

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
           R IDLL RAG+  EA+D+I ++PF+P+  IWEA+L+GCRI+G+++LG  AA+QLF+++P 
Sbjct: 574 RLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPE 633

Query: 620 HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPE 679
           H GTY+LLSN Y+  GRW DAARVRKLMRDRGVKKEPGCSWIEV NKVHVFLV DT HP+
Sbjct: 634 HDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGNKVHVFLVGDTKHPD 693

Query: 680 AQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGA 739
           A  VY++LE +  +MRKLGYVPDTKF L DM   +KEY L  HSE+LAV+FGL+KLP GA
Sbjct: 694 AHEVYRFLEMVGAKMRKLGYVPDTKFALQDMAPHEKEYVLFAHSERLAVSFGLLKLPAGA 753

Query: 740 TVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           TV VLKNL+ICGDCH A  FMS+ VGREIVVRD +RFHHF+DG+CSCG+YW
Sbjct: 754 TVTVLKNLKICGDCHTAMMFMSRAVGREIVVRDVRRFHHFKDGECSCGNYW 804


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  842 bits (2175), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/713 (56%), Positives = 524/713 (73%), Gaps = 17/713 (2%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM-RRD 143
           T+L+AA +A+  ++ A   F+  P   RDTV +NAM++A++  S    A+ +F  +    
Sbjct: 96  TSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSG 155

Query: 144 DVKPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSP 202
            ++PD+++FT+++SA+  +       C Q+HC+V+KSG     SV NALI++Y+KC  +P
Sbjct: 156 SLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKC-DTP 214

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL 262
             S       AR+V DEMP++D+L+WTTM+ GYV+   ++AAR   + +     V WNA+
Sbjct: 215 EASWD-----ARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAM 269

Query: 263 ISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
           ISGYV   +         +M+  ++ LDEFT+TSV+SACAN+G F  GK VH  ++R + 
Sbjct: 270 ISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQP 329

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
              PE +LPVNNALVTLY K GK+  A+ IF+ M  +D+VSWN ILS Y+ +G +D+A  
Sbjct: 330 NFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVE 389

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
           +F+ M  +N LSW VM+SG    G  E+ LKLF+QMR E  KPCDY +AGAI +C  LGA
Sbjct: 390 VFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGA 449

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
           L++GRQLHA LV  G+++S SAGNAL+TMYA+CG V  A  VF  MPN+DSVSWNAMI+A
Sbjct: 450 LKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISA 509

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
           LGQHG+G  A+EL++QM+ EGI PDRI+FLT+L+ACNHAGLV EG  YFE+M   +GI P
Sbjct: 510 LGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISP 569

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
           GEDHYAR IDLL R+G+  EA+D+I ++PF+P+  IWEA+L+GCR +G+++ G  AA+QL
Sbjct: 570 GEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQL 629

Query: 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVD 673
           F+++P H GTY+LLSN Y+  GRW DAARVRKLMRDRGVKKEPGCSWIEV +K+HVFLV 
Sbjct: 630 FRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVG 689

Query: 674 DTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLM 733
           DT HPEAQ VY++LE +   MRKLGYVPDTKFVLHDME  +KEY L  HSEKLAV FGL+
Sbjct: 690 DTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLL 749

Query: 734 KLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSC 786
           KLP GATV VLKNLRICGDCH A  FMSK VGREIVVRD +RFHHF+DG+CSC
Sbjct: 750 KLPPGATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSC 802



 Score =  193 bits (490), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 152/503 (30%), Positives = 234/503 (46%), Gaps = 78/503 (15%)

Query: 37  VHAHMISSGFKPREHIINRLIDIY--CKSLKLVY-ARTLFDEIPQPDIVARTTLIAAYSA 93
           +H  ++ SG      + N LI +Y  C + +  + AR + DE+P  D +  TT++  Y  
Sbjct: 185 LHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVR 244

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
             +V  AR +F +   K    V +NAMI+ Y  +     A ELFR M  + V  D FTFT
Sbjct: 245 RGDVNAARSVFEEVDGKF--DVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFT 302

Query: 154 SVLSALA---LIVEEEK---QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSR 207
           SVLSA A     V  +    Q +++    V         V NAL+++Y         S  
Sbjct: 303 SVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAA---LPVNNALVTLY---------SKG 350

Query: 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV 267
             +  A+R+FD M  +D +SW T+++GY+ +  LD A E    M     ++W  ++SGYV
Sbjct: 351 GKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYV 410

Query: 268 HRELKMLMLR---------IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
           H  L    L+         ++  ++TY   I+AC   G  + G+Q+HA+L++       E
Sbjct: 411 HGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGF----E 466

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
            S    NAL+T+Y KCG VN+AR +F  MP  D VSWNA++SA                 
Sbjct: 467 ASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISA----------------- 509

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
                         L Q+G+G E L+LF QM  EG  P   +F   +T+C   G ++ G 
Sbjct: 510 --------------LGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGF 555

Query: 439 QLHAQLVHSGYDSSLSAGN----ALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAA 493
                +     D  +S G      LI +  R G +  A  +  TMP   + S W A+++ 
Sbjct: 556 HYFESMKR---DFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSG 612

Query: 494 LGQHGN---GARAIELYEQMLKE 513
              +G+   GA A +   +M+ +
Sbjct: 613 CRTNGDMEFGAYAADQLFRMIPQ 635



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 152/342 (44%), Gaps = 50/342 (14%)

Query: 34  ARSVHAHMI--SSGFKPREH--IINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
            +SVH  +I     F P     + N L+ +Y K  K+V A+ +FD +   D+V+  T+++
Sbjct: 317 GKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILS 376

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
            Y  S  +  A E+F   P K  + + +  M++ Y H      A++LF  MR +DVKP +
Sbjct: 377 GYIDSGCLDKAVEVFKVMPYK--NDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCD 434

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           +T+   ++A   +    K   Q+H  +V+ G     S  NAL+++Y KC           
Sbjct: 435 YTYAGAIAACGEL-GALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKC---------GA 484

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +  AR VF  MP  D +SW  M++   ++ +   A E  D                    
Sbjct: 485 VNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFD-------------------- 524

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN---- 325
             +M+   I  D  ++ ++++AC ++GL   G      + R       +F +        
Sbjct: 525 --QMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKR-------DFGISPGEDHYA 575

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSAYVSAG 366
            L+ L  + G++ EARD+   MP     S W AILS   + G
Sbjct: 576 RLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNG 617



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 35/153 (22%)

Query: 6   ADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLK 65
           A+ ++     YA  +  C     +     R +HAH++  GF+      N L+ +Y K   
Sbjct: 427 AEDVKPCDYTYAGAIAACGELGALKH--GRQLHAHLVQCGFEASNSAGNALLTMYAKCGA 484

Query: 66  LVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYS 125
           +  AR +F  +P  D V+                                 +NAMI+A  
Sbjct: 485 VNDARLVFLVMPNLDSVS---------------------------------WNAMISALG 511

Query: 126 HNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA 158
            + +G  A+ELF  M  + + PD  +F ++L+A
Sbjct: 512 QHGHGREALELFDQMVAEGIDPDRISFLTILTA 544


>gi|255561307|ref|XP_002521664.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539055|gb|EEF40651.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 574

 Score =  837 bits (2161), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/561 (72%), Positives = 472/561 (84%), Gaps = 9/561 (1%)

Query: 2   MMKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYC 61
           M +  +++RT AN YAS LQLC P++PI+   AR++HAHMI+SGFKP  H +NRLI IYC
Sbjct: 4   MKRFIEHVRTAANHYASLLQLCCPQSPISYPFARTIHAHMIASGFKPHGHTLNRLIYIYC 63

Query: 62  KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMI 121
           KS KL YAR+LFDEIPQPDIVARTTLI AYSA+ ++KLA+EMF +TPL MRD V YNAMI
Sbjct: 64  KSSKLSYARSLFDEIPQPDIVARTTLINAYSATGHLKLAKEMFYETPLIMRDAVIYNAMI 123

Query: 122 TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGT 181
           TAYSHN++GHAAIELF DM+R+D +PDNFTFTSVL ALAL+ E E+ C Q+HCTVVKSGT
Sbjct: 124 TAYSHNNDGHAAIELFCDMKRNDFRPDNFTFTSVLGALALVAENERHCQQLHCTVVKSGT 183

Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
              TSVLNALISVYVKC SSP V S SLMGAARR+FDEMP RDELSWTT++TGYVKND L
Sbjct: 184 WFVTSVLNALISVYVKCASSPSVISSSLMGAARRLFDEMPVRDELSWTTIITGYVKNDDL 243

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISAC 292
           DAARE  DGM E + V WNA+ISGY+HR L         KM +  ++LDEFTYTS+ISAC
Sbjct: 244 DAAREVFDGMREKLVVVWNAMISGYMHRGLYQEALEMFRKMYLAGLKLDEFTYTSIISAC 303

Query: 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL 352
           AN+G  + GKQVHAY+L+TEA P+P+FSLPVNNALVTLYWKCGKV+EA+++FN MP RDL
Sbjct: 304 ANAGFLQHGKQVHAYILKTEAMPSPDFSLPVNNALVTLYWKCGKVDEAQEVFNNMPVRDL 363

Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
           VSWN ILS Y++AG +DEAK+ FE M E+N+LSW VMISGLAQNG+GEEGLKLF+QM+L 
Sbjct: 364 VSWNTILSGYLNAGRMDEAKTFFEEMPEKNILSWVVMISGLAQNGFGEEGLKLFNQMKLR 423

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
           GF+PCDYAFAGAITSC+ LG LE+GRQLHAQLV  G+DSSLSAGNALITMYARCGVVEAA
Sbjct: 424 GFEPCDYAFAGAITSCSMLGLLEHGRQLHAQLVRFGFDSSLSAGNALITMYARCGVVEAA 483

Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
             +F +MP VDSVSWNAMIAALGQHG G +AIEL+E+ML EGILPDRITFLTVLSAC+HA
Sbjct: 484 RTLFLSMPCVDSVSWNAMIAALGQHGYGVQAIELFEEMLIEGILPDRITFLTVLSACSHA 543

Query: 533 GLVKEGRRYFETMHGPYGIPP 553
           GLVKEG RYF +M   Y I P
Sbjct: 544 GLVKEGHRYFNSMSRVYRITP 564


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 327/802 (40%), Positives = 493/802 (61%), Gaps = 49/802 (6%)

Query: 17  ASQLQLCDPRNPITSSLARS-----------VHAHMISSGFKPREHIINRLIDIYCKSLK 65
           +SQ+ L  P +P TS L RS           +HA +I +G      ++N L++ Y K+  
Sbjct: 5   SSQI-LTSPSDPYTSFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGF 63

Query: 66  LVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYS 125
           +  A  +FDE+P   + +   +++ Y+    ++ A  +F + P    D+V + AMI  Y+
Sbjct: 64  IYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEP--DSVSWTAMIVGYN 121

Query: 126 HNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM----QMHCTVVKSGT 181
                  AI +FR+M  DDV P  FT T+VL++ A +     +C+    ++H  VVK G 
Sbjct: 122 QMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAV-----ECLGIGRKVHSFVVKHGL 176

Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
             + SV N+L+++Y K    P          A+ VFD M  +   SW TM++ ++++  +
Sbjct: 177 SSYISVANSLLNMYAKS-GDPVT--------AKIVFDRMKLKSTSSWNTMISSHMQSGLV 227

Query: 242 DAAREFLDGMSENVGVAWNALISGY----VHREL-----KMLM-LRIQLDEFTYTSVISA 291
           D A+   + M E   V+WNA+ISGY      RE      KMLM    + D+FT  S +SA
Sbjct: 228 DLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSA 287

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ--MPE 349
           CAN    +LGKQ+HA+++RTE          V NAL+++Y K G V  A+ I  Q  +  
Sbjct: 288 CANLENLKLGKQIHAHIIRTEFDTFG----AVGNALISMYSKSGGVEIAQKIIEQSMISN 343

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
            D++++ A+L  YV  G I+ A+ +F+++R R++++WT MI G  QNG+ ++ ++LF  M
Sbjct: 344 LDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSM 403

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
             EG KP +Y  A  ++  + L +L++GRQ+HA    SG  SS+S  NALITMYA+ G +
Sbjct: 404 IKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSI 463

Query: 470 EAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
             A  VFN +    D+++W +MI AL QHG G  A+ L+E+ML+ GI PD IT++ VLSA
Sbjct: 464 NDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSA 523

Query: 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
           C H GLV++GR Y+  M   + I P   HYA  IDL  RAG   EA   I+++P +P   
Sbjct: 524 CTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVI 583

Query: 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648
            W +LLA C++H N++L   AAE+L  + P ++G Y  L+N+Y+  G+W++AA +RK M+
Sbjct: 584 AWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMK 643

Query: 649 DRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLH 708
           D+GVKK+ G SW+++ NKVH+F VDD  HP+  A+Y+ + ++  E++K+G+VPDT+ VLH
Sbjct: 644 DKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAIYEMMAKIWKEIKKMGFVPDTESVLH 703

Query: 709 DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREI 768
           D+E + KE  LS HSEKLA+AFGL+  P   T+R++KNLR+C DCH+A KF+SK+VGREI
Sbjct: 704 DLEEELKEQILSHHSEKLAIAFGLICTPENTTLRIMKNLRVCNDCHSAIKFISKLVGREI 763

Query: 769 VVRDGKRFHHFRDGKCSCGDYW 790
           +VRD  RFHHF++G CSC DYW
Sbjct: 764 IVRDATRFHHFKNGLCSCRDYW 785


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  603 bits (1556), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 316/774 (40%), Positives = 478/774 (61%), Gaps = 37/774 (4%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           A+ VH  +I SG     +++N L+++Y K+   ++AR LFDE+P     +  T+++AY+ 
Sbjct: 33  AQLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAK 92

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
             ++  + E F++ P   RD+V +  MI  Y +    H AI +  +M R+ ++P  FT T
Sbjct: 93  RGDMDSSCEFFDRLP--QRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLT 150

Query: 154 SVLSALALIVEEEKQCMQ----MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           +VL+++A       +C++    +H  +VK G     SV N+L+++Y KC   P +     
Sbjct: 151 NVLASVA-----ATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKC-GDPMM----- 199

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
              A+ VFD M  +D  SW  M+  +++   +D A    + M+E   V WN++ISGY  R
Sbjct: 200 ---AKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQR 256

Query: 270 --ELKML-----MLRIQL---DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
             +L+ L     MLR  +   D FT  SV+SACAN     +G+Q+H++++ T      + 
Sbjct: 257 GYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGF----DI 312

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV--SWNAILSAYVSAGLIDEAKSLFEA 377
           S  V NAL+++Y +CG V  AR +  Q   +DL    + A+L  Y+  G ++EAK++F++
Sbjct: 313 SGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDS 372

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
           +++R++++WT MI G  Q+G   E + LF  M  E  +P  Y  A  ++  + L +L +G
Sbjct: 373 LKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHG 432

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQ 496
           +Q+H   V SG   S+S  NALITMYA+ G + +A+  F+ +    D+VSW +MI AL Q
Sbjct: 433 KQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQ 492

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
           HG+   A+EL+E ML EG+ PD IT++ V SAC HAGLV +GR+YF+ M     I P   
Sbjct: 493 HGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLS 552

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           HYA  +DL  RAG   EA++ I+ +P +P    W +LL+ CR++ NIDLG  AAE+L  L
Sbjct: 553 HYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLL 612

Query: 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTA 676
            P ++G Y  L+N+Y+  G+W++AA++RK M+D  VKKE G SWIEV +KVH F V+D  
Sbjct: 613 EPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGI 672

Query: 677 HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLP 736
           HP+   +Y  ++++  E++K+GYVPDT  VLHD+E + KE  L  HSEKLA+AFGL+  P
Sbjct: 673 HPQKNEIYITMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTP 732

Query: 737 GGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
              T+R++KNLR+C DCH A KF+SK+VGREI+VRD  RFHHF+DG CSC DYW
Sbjct: 733 DKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 114/423 (26%), Positives = 195/423 (46%), Gaps = 55/423 (13%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPD--IVARTTLIAA 90
           +   +H+H++++GF     ++N LI +Y +   +  AR L ++    D  I   T L+  
Sbjct: 297 IGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDG 356

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
           Y    ++  A+ +F+   LK RD V + AMI  Y  +     AI LFR M  ++ +P+++
Sbjct: 357 YIKLGDMNEAKNIFD--SLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSY 414

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           T  ++LS +A  +       Q+H + VKSG     SV NALI++Y K  S         +
Sbjct: 415 TLAAMLS-VASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGS---------I 464

Query: 211 GAARRVFDEMP-ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
            +A R FD +  ERD +SWT+M+    ++ + + A E  +                    
Sbjct: 465 TSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFE-------------------- 504

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
              MLM  ++ D  TY  V SAC ++GL   G+Q +  +++   K  P  +L     +V 
Sbjct: 505 --TMLMEGLRPDHITYVGVFSACTHAGLVNQGRQ-YFDMMKDVDKIIP--TLSHYACMVD 559

Query: 330 LYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFE---AMRERNLLS 385
           L+ + G + EA++   +MP E D+V+W ++LSA      ID  K   E    +   N  +
Sbjct: 560 LFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGA 619

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
           ++ + +  +  G  EE  K+   M+            G +    G   +E   ++HA  V
Sbjct: 620 YSALANLYSACGKWEEAAKIRKSMK-----------DGRVKKEQGFSWIEVKHKVHAFGV 668

Query: 446 HSG 448
             G
Sbjct: 669 EDG 671


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 321/795 (40%), Positives = 462/795 (58%), Gaps = 40/795 (5%)

Query: 17  ASQLQLCD-PRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVY-----AR 70
           A  LQ C    NP      R++HA  + +G     ++ N L+  Y             AR
Sbjct: 27  ARLLQRCQTAANP---GAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREAR 83

Query: 71  TLFDEIP--QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
            LFDEIP  Q ++    +L++ Y+ S  +  AR +F + P   RD V +  M+   +   
Sbjct: 84  RLFDEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMP--ERDPVSWTVMVVGLNRVG 141

Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL 188
               AI++F DM  D + P  FT T+VLS+ A   E      ++H  VVK G      V 
Sbjct: 142 RFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCA-ATEARGVGRKVHSFVVKLGLSSCVPVA 200

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           N+++++Y KC  +           AR VF+ MPER   SW  M++       +D A    
Sbjct: 201 NSVLNMYGKCGDAE---------TARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLF 251

Query: 249 DGMSENVGVAWNALISGYVHRELKMLML----------RIQLDEFTYTSVISACANSGLF 298
           + M +   V+WNA+I+GY    L    L           +  DEFT TSV+SACAN G+ 
Sbjct: 252 ENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMV 311

Query: 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ--MPERDLVSWN 356
            +GKQVHAY+LR+      +    V NAL+++Y K G V  AR +  Q  M + +++S+ 
Sbjct: 312 SIGKQVHAYILRSRMPYIGQ----VTNALISMYAKSGSVENARGVMQQAVMADLNVISFT 367

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
           A+L  YV  G +  A+ +F+ M  R++++WT MI G  QNG+ +E ++LF  M   G +P
Sbjct: 368 ALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEP 427

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
             Y  A  ++ CA L  LE G+Q+H + + S  + S S  N+++TMYAR G +  A  VF
Sbjct: 428 NSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVF 487

Query: 477 NTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           + +    ++V+W +MI AL QHG G  A+ L+E+ML+ G+ PDRITF+ VLSAC H G V
Sbjct: 488 DRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFV 547

Query: 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
            EG+RYF+ +   +GI P   HYA  +DLL RAG FSEA++ I  +P +P A  W +LL+
Sbjct: 548 DEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLS 607

Query: 596 GCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKE 655
            CR+H N DL   AAE+L  + P ++G Y  LSN+Y+  GRW+DAA++ K  +D+ VKKE
Sbjct: 608 ACRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKE 667

Query: 656 PGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQK 715
            G SW  + N+VHVF  DD  HP+   VY+   ++  +++K G+VPD + VLHD++ + K
Sbjct: 668 TGFSWTHIGNRVHVFGADDVLHPQRDTVYRTAAKMWDDIKKAGFVPDLQSVLHDVDDELK 727

Query: 716 EYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKR 775
           E  LS HSEKLA+AFGL+  P   T+R++KNLR+C DCH A KF+SKV  REI++RD  R
Sbjct: 728 EEMLSRHSEKLAIAFGLVSTPEKTTLRIMKNLRVCNDCHTAIKFISKVADREIILRDATR 787

Query: 776 FHHFRDGKCSCGDYW 790
           FHHF+DG CSC DYW
Sbjct: 788 FHHFKDGFCSCKDYW 802


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 322/774 (41%), Positives = 477/774 (61%), Gaps = 37/774 (4%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           A+ VH  +I SG     +++N L+++Y K+   ++AR LFDE+P     +  T+++AYS 
Sbjct: 33  AQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSK 92

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
             ++    E F++ P   RD+V +  MI  Y +    H AI +  DM ++ ++P  FT T
Sbjct: 93  RGDMDSTCEFFDQLP--QRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLT 150

Query: 154 SVLSALALIVEEEKQCMQ----MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           +VL+++A       +CM+    +H  +VK G     SV N+L+++Y KC   P +     
Sbjct: 151 NVLASVA-----ATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKC-GDPMM----- 199

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
              A+ VFD M  RD  SW  M+  +++   +D A    + M+E   V WN++ISG+  R
Sbjct: 200 ---AKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQR 256

Query: 270 --ELKML-----MLRIQL---DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
             +L+ L     MLR  L   D FT  SV+SACAN     +GKQ+H++++ T      + 
Sbjct: 257 GYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGF----DI 312

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV--SWNAILSAYVSAGLIDEAKSLFEA 377
           S  V NAL+++Y +CG V  AR +  Q   +DL    + A+L  Y+  G +++AK++F +
Sbjct: 313 SGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVS 372

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
           +++R++++WT MI G  Q+G   E + LF  M   G +P  Y  A  ++  + L +L +G
Sbjct: 373 LKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHG 432

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQ 496
           +Q+H   V SG   S+S  NALITMYA+ G + +A+  F+ +    D+VSW +MI AL Q
Sbjct: 433 KQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQ 492

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
           HG+   A+EL+E ML EG+ PD IT++ V SAC HAGLV +GR+YF+ M     I P   
Sbjct: 493 HGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLS 552

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           HYA  +DL  RAG   EA++ I+ +P +P    W +LL+ CR+H NIDLG  AAE+L  L
Sbjct: 553 HYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLL 612

Query: 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTA 676
            P ++G Y  L+N+Y+  G+W++AA++RK M+D  VKKE G SWIEV +KVHVF V+D  
Sbjct: 613 EPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGT 672

Query: 677 HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLP 736
           HPE   +Y  ++++  E++K+GYVPDT  VLHD+E + KE  L  HSEKLA+AFGL+  P
Sbjct: 673 HPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTP 732

Query: 737 GGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
              T+R++KNLR+C DCH A KF+SK+VGREI+VRD  RFHHF+DG CSC DYW
Sbjct: 733 DKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 182/385 (47%), Gaps = 44/385 (11%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPD--IVARTTLIAA 90
           + + +H+H++++GF     ++N LI +Y +   +  AR L ++    D  I   T L+  
Sbjct: 297 IGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDG 356

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
           Y    ++  A+ +F    LK RD V + AMI  Y  + +   AI LFR M     +P+++
Sbjct: 357 YIKLGDMNQAKNIF--VSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSY 414

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           T  + + ++A  +       Q+H + VKSG     SV NALI++Y K  +         +
Sbjct: 415 TLAA-MLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGN---------I 464

Query: 211 GAARRVFDEMP-ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
            +A R FD +  ERD +SWT+M+    ++ + + A E  +                    
Sbjct: 465 TSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFE-------------------- 504

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
              MLM  ++ D  TY  V SAC ++GL   G+Q +  +++   K  P  +L     +V 
Sbjct: 505 --TMLMEGLRPDHITYVGVFSACTHAGLVNQGRQ-YFDMMKDVDKIIP--TLSHYACMVD 559

Query: 330 LYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFE---AMRERNLLS 385
           L+ + G + EA++   +MP E D+V+W ++LSA      ID  K   E    +   N  +
Sbjct: 560 LFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGA 619

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMR 410
           ++ + +  +  G  EE  K+   M+
Sbjct: 620 YSALANLYSACGKWEEAAKIRKSMK 644


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 321/798 (40%), Positives = 464/798 (58%), Gaps = 39/798 (4%)

Query: 13  ANRYASQLQLCD-PRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLK----LV 67
           ++ YA  LQLC    NP      R++HA  + +G     ++ N L+  Y ++      L 
Sbjct: 26  SDHYARLLQLCQTAANP---GAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLR 82

Query: 68  YARTLFDEIP--QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYS 125
            AR LFDEIP  + ++    +L++ ++ S  +  AR +F + P   RD V +  M+   +
Sbjct: 83  DARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMP--ERDAVSWTVMVVGLN 140

Query: 126 HNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFT 185
                  AI+   DM  D   P  FT T+VLS+ A + +      ++H  VVK G G   
Sbjct: 141 RAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCA-VTQAGAVGRKVHSFVVKLGLGSCV 199

Query: 186 SVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245
            V N+++++Y KC  S           A  VF+ MP R   SW  M++       +D A 
Sbjct: 200 PVANSVLNMYGKCGDSE---------TATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAE 250

Query: 246 EFLDGMSENVGVAWNALISGYVHRELKMLMLRI----------QLDEFTYTSVISACANS 295
              + M +   V+WNA+I+GY    L    L++            DEFT TSV+SACAN 
Sbjct: 251 SLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANL 310

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL--V 353
           G  R+GKQVHAY+LRTE      ++  V NAL++ Y K G V  AR I +Q  E DL  +
Sbjct: 311 GNVRIGKQVHAYILRTEMA----YNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVI 366

Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
           S+ A+L  YV  G ++ A+ +F  M  R++++WT MI G  QNG  +E + LF  M   G
Sbjct: 367 SFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCG 426

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473
            +P  Y  A  ++ CA L  L+ G+Q+H + + S  + S S  NA+ITMYAR G    A 
Sbjct: 427 PEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWAR 486

Query: 474 CVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
            +F+ +    ++++W +MI AL QHG G  A+ L+E+ML+ G+ PDRIT++ VLSAC+HA
Sbjct: 487 RMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHA 546

Query: 533 GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592
           G V EG+RY++ +   + I P   HYA  +DLL RAG FSEA++ I  +P +P A  W +
Sbjct: 547 GFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGS 606

Query: 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           LL+ CR+H N +L   AAE+L  + P+++G Y  ++N+Y+  GRW DAAR+ K  +++ V
Sbjct: 607 LLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAV 666

Query: 653 KKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMES 712
           +KE G SW  + +K+HVF  DD  HP+  AVY    ++  E++  G+VPD + VLHD++ 
Sbjct: 667 RKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDD 726

Query: 713 DQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRD 772
           + KE  LS HSEKLA+AFGL+  P   T+RV+KNLR+C DCH A K +SKV  REI+VRD
Sbjct: 727 ELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRD 786

Query: 773 GKRFHHFRDGKCSCGDYW 790
             RFHHFRDG CSC DYW
Sbjct: 787 ATRFHHFRDGLCSCKDYW 804


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  596 bits (1536), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 320/798 (40%), Positives = 464/798 (58%), Gaps = 39/798 (4%)

Query: 13  ANRYASQLQLCD-PRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLK----LV 67
           ++ YA  LQLC    NP      R++HA  + +G     ++ N L+  Y ++      L 
Sbjct: 26  SDHYARLLQLCQTAANP---GAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLR 82

Query: 68  YARTLFDEIP--QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYS 125
            AR LFDEIP  + ++    +L++ ++ S  +  AR +F + P   RD V +  M+   +
Sbjct: 83  DARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMP--ERDAVSWTVMVVGLN 140

Query: 126 HNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFT 185
                  AI+   DM  D   P  FT T+VLS+ A + +      ++H  VVK G G   
Sbjct: 141 RAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCA-VTQAGAVGRKVHSFVVKLGLGSCV 199

Query: 186 SVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245
            V N+++++Y KC  +   S+         VF+ MP R   SW  M++       +D A 
Sbjct: 200 PVANSVLNMYGKCGDAETAST---------VFERMPVRSVSSWNAMVSLNTHLGRMDLAE 250

Query: 246 EFLDGMSENVGVAWNALISGYVHRELKMLMLRI----------QLDEFTYTSVISACANS 295
              + M     V+WNA+I+GY    L    L++            DEFT TSV+SACAN 
Sbjct: 251 SLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANL 310

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL--V 353
           G  R+GKQVHAY+LRTE      ++  V NAL++ Y K G V  AR I +Q  E DL  +
Sbjct: 311 GNVRIGKQVHAYILRTEMA----YNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVI 366

Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
           S+ A+L  YV  G ++ A+ +F  M  R++++WT MI G  QNG  +E + LF  M   G
Sbjct: 367 SFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCG 426

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473
            +P  Y  A  ++ CA L  L+ G+Q+H + + S  + S S  NA+ITMYAR G    A 
Sbjct: 427 PEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWAR 486

Query: 474 CVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
            +F+ +    ++++W +MI AL QHG G  A+ L+E+ML+ G+ PDRIT++ VLSAC+HA
Sbjct: 487 RMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHA 546

Query: 533 GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592
           G V EG+RY++ +   + I P   HYA  +DLL RAG FSEA++ I  +P +P A  W +
Sbjct: 547 GFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGS 606

Query: 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           LL+ CR+H N +L   AAE+L  + P+++G Y  ++N+Y+  GRW DAAR+ K  +++ V
Sbjct: 607 LLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAV 666

Query: 653 KKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMES 712
           +KE G SW  + +K+HVF  DD  HP+  AVY    ++  E++  G+VPD + VLHD++ 
Sbjct: 667 RKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDD 726

Query: 713 DQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRD 772
           + KE  LS HSEKLA+AFGL+  P   T+RV+KNLR+C DCH A K +SKV  REI+VRD
Sbjct: 727 ELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRD 786

Query: 773 GKRFHHFRDGKCSCGDYW 790
             RFHHFRDG CSC DYW
Sbjct: 787 ATRFHHFRDGLCSCKDYW 804


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 306/779 (39%), Positives = 475/779 (60%), Gaps = 33/779 (4%)

Query: 26  RNPITSSLARSVHAHMISSGFKPRE-HIINRLIDIYCKSLKLVYARTLFDEIPQPDIVAR 84
           R+P    + R +HA +I  G +     + N L+++Y K+     A  LFDE+P     + 
Sbjct: 26  RDPF---IGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSW 82

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
            T+++A++ + N+  AR +F++ P    D+V +  MI  Y+H     +A+  F  M    
Sbjct: 83  NTILSAHAKAGNLDSARRVFDEIP--QPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSG 140

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           + P  FTFT+VL++ A   +      ++H  VVK G      V N+L+++Y KC  S   
Sbjct: 141 ISPTQFTFTNVLASCA-AAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVM- 198

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                   A+ VFD M  +D  +W TM++ +++    D A    D M++   V+WN++I+
Sbjct: 199 --------AKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIIT 250

Query: 265 GYVHR-------ELKMLMLR---IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
           GY H+       E    ML+   ++ D+FT  SV+SACAN    +LGKQ+HA+++R +  
Sbjct: 251 GYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADV- 309

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDI--FNQMPERDLVSWNAILSAYVSAGLIDEAK 372
              + +  V NAL+++Y K G V  A  I      P  +++++ ++L  Y   G ID A+
Sbjct: 310 ---DIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPAR 366

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
           ++F++++ R++++WT MI G AQNG   + L LF  M  EG KP +Y  A  ++  + L 
Sbjct: 367 AIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLA 426

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV-DSVSWNAMI 491
           +L++G+QLHA  +     SS+S GNALITMY+R G ++ A  +FN + +  D+++W +MI
Sbjct: 427 SLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMI 486

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
            +L QHG G  AIEL+E+ML+  + PD IT++ VLSAC H GLV++G+ YF  M   + I
Sbjct: 487 LSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNI 546

Query: 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611
            P   HYA  IDLL RAG   EA + I ++P +P    W +LL+ CR+H  +DL   AAE
Sbjct: 547 EPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAE 606

Query: 612 QLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFL 671
           +L  + P+++G Y+ L+N  +  G+W+DAA+VRK M+D+ VKKE G SW+++ NKVH+F 
Sbjct: 607 KLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFG 666

Query: 672 VDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFG 731
           V+D  HP+  A+Y  + ++  E++K+G++PDT  VLHD+E + KE  L  HSEKLA+AF 
Sbjct: 667 VEDALHPQRDAIYCMISKIWKEIKKMGFIPDTNSVLHDLEQEVKEQILRHHSEKLAIAFA 726

Query: 732 LMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           L+  P   TVR++KNLR+C DCH+A +++S +V REI+VRD  RFHHF+DG CSC DYW
Sbjct: 727 LINTPKHTTVRIMKNLRVCNDCHSAIRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW 785


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 319/796 (40%), Positives = 465/796 (58%), Gaps = 37/796 (4%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLK----LVYA 69
           + +A  LQL   +  +  S  R++HAH + +G     ++ N L+  Y ++         A
Sbjct: 26  DHFARLLQL--SQTAVNPSAGRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEA 83

Query: 70  RTLFDEIPQPDIVART--TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHN 127
           R LFD+IP     A T  +L++ Y+ S  +  AR +F + P   RD V +  M+   +  
Sbjct: 84  RRLFDDIPYARRNAFTWNSLLSMYAKSGRLADARVVFAQMP--ERDAVSWTVMVVGLNRA 141

Query: 128 SNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSV 187
                A++ F DM  + + P  F  T+VLS+ A   E      ++H  V+K G      V
Sbjct: 142 GRFWDAVKTFLDMVGEGLAPSQFMLTNVLSSCA-ATEARGIGRKVHSFVIKLGLSSCVPV 200

Query: 188 LNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREF 247
            N+++ +Y KC  +           AR VF+ M  R E SW  M++ Y     +D A   
Sbjct: 201 ANSVLYMYGKCGDAE---------TARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSM 251

Query: 248 LDGMSENVGVAWNALISGYVHRELKMLMLR----------IQLDEFTYTSVISACANSGL 297
            + M E   V+WNA+I+GY    L  + L+          ++ DEFT TSV+SACAN  +
Sbjct: 252 FENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRM 311

Query: 298 FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL--VSW 355
            ++GKQ+H+Y+LRT   P   +S  + NAL++ Y K G V  AR I ++    DL  +S+
Sbjct: 312 LKMGKQMHSYILRT-GMP---YSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISF 367

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
            A+L  YV  G   +A+ +F+ M  R++++WT MI G  QNG  +E ++LF  M   G +
Sbjct: 368 TALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPE 427

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P  +  A  +++CA L  L  G+Q+H + + S  + S+S  NA+IT+YAR G V  A  V
Sbjct: 428 PNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRV 487

Query: 476 FNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
           F+ +    ++V+W +MI AL QHG G +AI L+E+ML+ G+ PDR+T++ V SAC HAG 
Sbjct: 488 FDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGF 547

Query: 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
           + +G+RY+E M   +GI P   HYA  +DLL RAG  +EA + I  +P  P   +W +LL
Sbjct: 548 IDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLL 607

Query: 595 AGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKK 654
           A CR+  N DL   AAE+L  + P ++G Y  L+N+Y+  GRW+DAAR+ KL +D+ VKK
Sbjct: 608 AACRVRKNADLAELAAEKLLSIDPDNSGAYSALANVYSACGRWNDAARIWKLRKDKAVKK 667

Query: 655 EPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQ 714
           E G SW  V +KVHVF  DD  HP+  A+ K   ++  E++K G+VPD   VLHD++ + 
Sbjct: 668 ETGFSWTHVQSKVHVFGADDVLHPQRDAICKKAAEMWEEIKKAGFVPDLNSVLHDVDDEL 727

Query: 715 KEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGK 774
           KE  LS HSEKLA+AFGL+  P   T+R++KNLR+C DCH A KF+SKVV REI+VRD  
Sbjct: 728 KEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKFISKVVDREIIVRDAT 787

Query: 775 RFHHFRDGKCSCGDYW 790
           RFHHFRDG CSC DYW
Sbjct: 788 RFHHFRDGYCSCKDYW 803


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 310/775 (40%), Positives = 461/775 (59%), Gaps = 39/775 (5%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            RSVH  +I  G     +++N L+  Y K+  L +A  +FDE+P     +  TLI+ Y+ 
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
             N +++R +  + P    D V + A+I  Y+       AI +F  M  + V P  FT +
Sbjct: 89  QGNFEVSRRLLYEMP--DCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVS 146

Query: 154 SVLSALALIVEEEKQCM----QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           +VLS+ A       Q +    ++H  VVK G G    V  +L+++Y KC   P +     
Sbjct: 147 NVLSSCA-----ANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKC-GDPVI----- 195

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
              A+ VFD M  ++  +W  +++ Y+++   + A    + M +   V+WN++ISGY  +
Sbjct: 196 ---AKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQ 252

Query: 270 ELKMLMLRI----------QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
              +  L I          + D FT  S++SACAN     +GKQ+HAY+LR E     E 
Sbjct: 253 GYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAET----ET 308

Query: 320 SLPVNNALVTLYWKCGKVNEARDIF--NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
           S  V NAL+++Y K G V  AR I   N+    +++++ ++L  Y   G +  A+ +F  
Sbjct: 309 SGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNK 368

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
           +R+R++++WT MI G  QNG   + L+LF  M  EG +P  Y  A  ++  + L  LE+G
Sbjct: 369 LRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHG 428

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--VDSVSWNAMIAALG 495
           +Q+HA  + +G  S+ S  NALI MYA+ G +  A  VF+ +PN   + VSW +MI AL 
Sbjct: 429 KQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFD-LPNGKKEIVSWTSMIMALA 487

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
           QHG G  AI L+E+ML  G+ PD IT++ VLSAC H GLV++GR+Y+  M   + I P  
Sbjct: 488 QHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTL 547

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
            HYA  IDL  RAG   EA   I+S+P +P    W +LLA C+IH N DL   AAE+L  
Sbjct: 548 SHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLL 607

Query: 616 LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
           + P ++G Y+ L+N+Y+  G+W++AA+ RKLM+DRGV+KE G SWI + N+VH F V+D 
Sbjct: 608 IDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDV 667

Query: 676 AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKL 735
            HP+   +YK + ++  E++K+G++PDT+ VLHD+E + KE  L  HSEKLA+AFGL+  
Sbjct: 668 IHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNT 727

Query: 736 PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           P    +R++KNLR+C DCH+A KF+SK+VGREI+VRD  RFHHF+DG CSC DYW
Sbjct: 728 PENTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 141/517 (27%), Positives = 246/517 (47%), Gaps = 64/517 (12%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           T  + R +H+ ++  G      +   L+++Y K    V A+ +FD +   +I     LI+
Sbjct: 157 TLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALIS 216

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPD 148
            Y  S   +LA   F K P   RD V +N+MI+ YS       A+ +F  M  +  +KPD
Sbjct: 217 LYMQSGQFELAASQFEKMP--DRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPD 274

Query: 149 NFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
           NFT  S+LSA A + E+     Q+H  ++++ T    +V NALIS+Y K   S  V    
Sbjct: 275 NFTLASILSACANL-EKLNIGKQIHAYILRAETETSGAVGNALISMYAK---SGGVEIAR 330

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
           L+    R  +     + +++T+++ GY K   +  ARE  + + +   VAW A+I GYV 
Sbjct: 331 LIVEHNRTSN----LNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQ 386

Query: 269 REL---KMLMLRIQLDE------FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
             L    + + R+ ++E      +T  +++S  ++  +   GKQ+HA  ++     TP  
Sbjct: 387 NGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPS- 445

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMP--ERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
              V NAL+ +Y K G +N A+ +F+ +P  ++++VSW +++ A    GL          
Sbjct: 446 ---VTNALIAMYAKTGNINVAKRVFD-LPNGKKEIVSWTSMIMALAQHGL---------- 491

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
                                G+E + LF +M   G KP    + G +++C  +G +E G
Sbjct: 492 ---------------------GKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQG 530

Query: 438 RQLHAQL--VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAAL 494
           R+ +  +  VH   + +LS    +I +Y R G+++ A     +MP   D+++W +++A+ 
Sbjct: 531 RKYYNMMTEVHE-IEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASC 589

Query: 495 GQHGNGARAIELYEQML--KEGILPDRITFLTVLSAC 529
             H N   A    E++L    G     +    V SAC
Sbjct: 590 KIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSAC 626


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 310/775 (40%), Positives = 461/775 (59%), Gaps = 39/775 (5%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            RSVH  +I  G     +++N L+  Y K+  L +A  +FDE+P     +  TLI+ Y+ 
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
             N +++R +  + P    D V + A+I  Y+       AI +F  M  + V P  FT +
Sbjct: 89  QGNFEVSRRLLYEMP--DCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVS 146

Query: 154 SVLSALALIVEEEKQCM----QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           +VLS+ A       Q +    ++H  VVK G G    V  +L+++Y KC   P +     
Sbjct: 147 NVLSSCA-----ANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKC-GDPVI----- 195

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
              A+ VFD M  ++  +W  +++ Y+++   + A    + M +   V+WN++ISGY  +
Sbjct: 196 ---AKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQ 252

Query: 270 ELKMLMLRI----------QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
              +  L I          + D FT  S++SACAN     +GKQ+HAY+LR E     E 
Sbjct: 253 GYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAET----ET 308

Query: 320 SLPVNNALVTLYWKCGKVNEARDIF--NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
           S  V NAL+++Y K G V  AR I   N+    +++++ ++L  Y   G +  A+ +F  
Sbjct: 309 SGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNK 368

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
           +R+R++++WT MI G  QNG   + L+LF  M  EG +P  Y  A  ++  + L  LE+G
Sbjct: 369 LRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHG 428

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--VDSVSWNAMIAALG 495
           +Q+HA  + +G  S+ S  NALI MYA+ G +  A  VF+ +PN   + VSW +MI AL 
Sbjct: 429 KQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFD-LPNGKKEIVSWTSMIMALA 487

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
           QHG G  AI L+E+ML  G+ PD IT++ VLSAC H GLV++GR+Y+  M   + I P  
Sbjct: 488 QHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTL 547

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
            HYA  IDL  RAG   EA   I+S+P +P    W +LLA C+IH N DL   AAE+L  
Sbjct: 548 SHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLL 607

Query: 616 LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
           + P ++G Y+ L+N+Y+  G+W++AA+ RKLM+DRGV+KE G SWI + N+VH F V+D 
Sbjct: 608 IDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDV 667

Query: 676 AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKL 735
            HP+   +YK + ++  E++K+G++PDT+ VLHD+E + KE  L  HSEKLA+AFGL+  
Sbjct: 668 IHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNT 727

Query: 736 PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           P    +R++KNLR+C DCH+A KF+SK+VGREI+VRD  RFHHF+DG CSC DYW
Sbjct: 728 PENTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 141/517 (27%), Positives = 246/517 (47%), Gaps = 64/517 (12%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           T  + R +H+ ++  G      +   L+++Y K    V A+ +FD +   +I     LI+
Sbjct: 157 TLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALIS 216

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPD 148
            Y  S   +LA   F K P   RD V +N+MI+ YS       A+ +F  M  +  +KPD
Sbjct: 217 LYMQSGQFELAASQFEKMP--DRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPD 274

Query: 149 NFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
           NFT  S+LSA A + E+     Q+H  ++++ T    +V NALIS+Y K   S  V    
Sbjct: 275 NFTLASILSACANL-EKLNIGKQIHAYILRAETETSGAVGNALISMYAK---SGGVEIAR 330

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
           L+    R  +     + +++T+++ GY K   +  ARE  + + +   VAW A+I GYV 
Sbjct: 331 LIVEHNRTSN----LNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQ 386

Query: 269 REL---KMLMLRIQLDE------FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
             L    + + R+ ++E      +T  +++S  ++  +   GKQ+HA  ++     TP  
Sbjct: 387 NGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPS- 445

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMP--ERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
              V NAL+ +Y K G +N A+ +F+ +P  ++++VSW +++ A    GL          
Sbjct: 446 ---VTNALIAMYAKTGNINVAKRVFD-LPNGKKEIVSWTSMIMALAQHGL---------- 491

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
                                G+E + LF +M   G KP    + G +++C  +G +E G
Sbjct: 492 ---------------------GKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQG 530

Query: 438 RQLHAQL--VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAAL 494
           R+ +  +  VH   + +LS    +I +Y R G+++ A     +MP   D+++W +++A+ 
Sbjct: 531 RKYYNMMTEVHE-IEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASC 589

Query: 495 GQHGNGARAIELYEQML--KEGILPDRITFLTVLSAC 529
             H N   A    E++L    G     +    V SAC
Sbjct: 590 KIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSAC 626


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 308/799 (38%), Positives = 466/799 (58%), Gaps = 70/799 (8%)

Query: 54   NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
            N +I  Y ++  L  AR LFDE+P+ ++ +  +++  Y     +  ARE+F++ P   R+
Sbjct: 268  NAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMP--ERN 325

Query: 114  TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMH 173
            +V +  MI+ Y H S+   A ++F  M R   +PD   F  VLSA+  + ++ +    + 
Sbjct: 326  SVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGL-DDLELIGSLR 384

Query: 174  CTVVKSG----TGLFTSVLNA---------------------------LISVYVKC---- 198
               +K+G      + +++LNA                           +I+ + +C    
Sbjct: 385  PIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLD 444

Query: 199  --------VSSPFVSSRSLM----------GAARRVFDEMPERDELSWTTMMTGYVKNDY 240
                    V    V++++ M            AR +FDE+   + ++W  ++ GY +N  
Sbjct: 445  DAIQLYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGM 504

Query: 241  LDAAREFLDGMSENVGVAWNALISGYVHRE--LKMLMLRIQL-------DEFTYTSVISA 291
            L  A++    M      +W A+I+G+V  E   + L L I+L        + ++TS +SA
Sbjct: 505  LKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSA 564

Query: 292  CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
            CAN G   +G+ +H+  ++T      +F+  V N L+++Y KCG V +   +F  +  +D
Sbjct: 565  CANIGDVEIGRVIHSLAIKTGC----QFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKD 620

Query: 352  LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
             VSWN+++S      ++D+A+ +FE M +R+++SWT +IS   Q G+GE  L LF  M  
Sbjct: 621  TVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLA 680

Query: 412  EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
             G KP        +++C  LGA++ G Q HA +   G+D+ L  GN+LITMY +CG  E 
Sbjct: 681  RGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGY-ED 739

Query: 472  ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
              CVF  MP  D ++WNA++    Q+G G  AI+++EQM  EGILPD+++FL VL AC+H
Sbjct: 740  GFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSH 799

Query: 532  AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
            AGLV EG  +F +M   YGI P   HY   +DLL RAG  SEA+ +I+++P KP + IWE
Sbjct: 800  AGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWE 859

Query: 592  ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
            ALL  CRIH N++LG + AE+LFQ+    + TYVLLSN++A+ G WD  A +RKLM+D+G
Sbjct: 860  ALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQG 919

Query: 652  VKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDME 711
            + KEPG SWI+V NK+H F+  D  H + + +Y  L++     R  GY+PDT FVLHD+E
Sbjct: 920  LTKEPGISWIQVKNKLHCFVTGDRTHDQIEEIYSALKEYYGCFRATGYMPDTNFVLHDVE 979

Query: 712  SDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVR 771
             +QK+  L  HSEKLAV FG++  P G+ ++++KNLRICGDCH   KFMSKV  R+I++R
Sbjct: 980  EEQKQNELLYHSEKLAVVFGILSTPNGSPIQIIKNLRICGDCHTFMKFMSKVTLRKIIIR 1039

Query: 772  DGKRFHHFRDGKCSCGDYW 790
            DG RFHHFRDG CSCGDYW
Sbjct: 1040 DGNRFHHFRDGSCSCGDYW 1058



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 174/647 (26%), Positives = 280/647 (43%), Gaps = 141/647 (21%)

Query: 75  EIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAI 134
           E PQ  +    T I        V+ AR +FN+  +  RD V +N+MI  YS N     A 
Sbjct: 165 ETPQTHLFQCNTRIQELGRLGRVEEARRVFNE--MIQRDVVSWNSMINGYSQNGKVDEAR 222

Query: 135 ELFRDMRRDDVKPDNFTFTSVLSALAL--IVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
            LF      +++    T+T +L+  A    +EE ++       V +S T       NA+I
Sbjct: 223 LLFDAFVGKNIR----TWTILLTGYAKEGRIEEARE-------VFESMTERNVVSWNAMI 271

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
           S YV+            +  AR++FDEMPE++  SW +++TGY     +  ARE  D M 
Sbjct: 272 SGYVQ---------NGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMP 322

Query: 253 ENVGVAWNALISGYVHRE---------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ 303
           E   V+W  +ISGYVH           +KM     + D+  +  V+SA   +GL  L  +
Sbjct: 323 ERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAI--TGLDDL--E 378

Query: 304 VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV 363
           +   L     K   E  + V +A++  Y + G ++ A   F  MPER+  SW  +++A+ 
Sbjct: 379 LIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFA 438

Query: 364 SAGLIDEAKSLFEAMRER-------------------------------NLLSWTVMISG 392
             G +D+A  L+E + E+                               N+++W  +I+G
Sbjct: 439 QCGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAG 498

Query: 393 LAQNGYGEEGLKLFSQMRLE-------------------------------GFKPCDYAF 421
             QNG  +E   LF +M ++                               G  P D +F
Sbjct: 499 YTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSF 558

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT--- 478
             A+++CA +G +E GR +H+  + +G   +    N LI+MYA+CG VE  + VF T   
Sbjct: 559 TSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRV 618

Query: 479 ----------------------------MPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
                                       MP  D VSW A+I+A  Q G+G  A++L+  M
Sbjct: 619 KDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDM 678

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA----RFIDLLC 566
           L  GI P+++T  ++LSAC + G +K G ++   +        G D +       I +  
Sbjct: 679 LARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALI-----FKLGFDTFLFVGNSLITMYF 733

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
           + G + +   V + +P +     W A+L GC  +G     I+  EQ+
Sbjct: 734 KCG-YEDGFCVFEEMP-EHDLITWNAVLVGCAQNGLGKEAIKIFEQM 778



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 160/334 (47%), Gaps = 27/334 (8%)

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
           K TP+  L   N  +    + G+V EAR +FN+M +RD+VSWN++++ Y   G +DEA+ 
Sbjct: 164 KETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARL 223

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
           LF+A   +N+ +WT++++G A+ G  EE  ++F  M        +   +G + +    G 
Sbjct: 224 LFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQN----GD 279

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
           L+N R+L  ++     + ++++ N+++T Y  C  +  A  +F+ MP  +SVSW  MI+ 
Sbjct: 280 LKNARKLFDEMP----EKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISG 335

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG--PYGI 551
                +   A +++ +M +    PD+  F+ VLSA         G    E +    P  I
Sbjct: 336 YVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAIT-------GLDDLELIGSLRPIAI 388

Query: 552 PPGEDH----YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
             G +      +  ++   R G    A    +++P +     W  ++A     G +D  I
Sbjct: 389 KTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYS-WTTMIAAFAQCGRLDDAI 447

Query: 608 QAAEQLFQLMPHHA-GTYVLLSNMYANLGRWDDA 640
               QL++ +P     T   +   YA +GR   A
Sbjct: 448 ----QLYERVPEQTVATKTAMMTAYAQVGRIQKA 477



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 150/334 (44%), Gaps = 47/334 (14%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           + R +H+  I +G +   +++N LI +Y K   +     +F  I   D V+  +LI+  S
Sbjct: 573 IGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLS 632

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
            +  +  AR +F K P   RD V + A+I+AY    +G  A++LF DM    +KP+  T 
Sbjct: 633 ENYMLDDARVVFEKMP--KRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTV 690

Query: 153 TSVLSA---LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC-VSSPFVSSRS 208
           TS+LSA   L  I    K   Q H  + K G   F  V N+LI++Y KC     F     
Sbjct: 691 TSLLSACGNLGAI----KLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYEDGFC---- 742

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
                  VF+EMPE D ++W  ++ G  +N     A +  + M           + G   
Sbjct: 743 -------VFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQME----------VEG--- 782

Query: 269 RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALV 328
                    I  D+ ++  V+ AC+++GL   G   H   +  +    P   +     +V
Sbjct: 783 ---------ILPDQMSFLGVLCACSHAGLVDEG-WAHFNSMTQKYGIMP--LVYHYTCMV 830

Query: 329 TLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
            L  + G ++EA  +   MP + D V W A+L A
Sbjct: 831 DLLGRAGYLSEAEALIENMPVKPDSVIWEALLGA 864


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 299/763 (39%), Positives = 467/763 (61%), Gaps = 29/763 (3%)

Query: 41  MISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLA 100
           M+  G     +++N L+++Y K+   + A  LF+E+P     +  T+++ Y+    ++ A
Sbjct: 1   MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKA 60

Query: 101 REMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA 160
            ++F+  P+  RD+V +  +I  Y+       AI++F DM +D V P  FT T+VL++ A
Sbjct: 61  HQVFDLIPV--RDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCA 118

Query: 161 LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEM 220
                     ++H  VVK G      V N+L+++Y K            +  A+ VFD M
Sbjct: 119 -ATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGD---------LKMAKVVFDRM 168

Query: 221 PERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG-----YVHRELKML- 274
             R+  SW  M++ ++    +D A    + +SE   V+WN++I+G     + +  L+   
Sbjct: 169 KLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFS 228

Query: 275 -MLR---IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
            +L+   ++ D F+  S +SACAN      GKQ+H Y++RT      + S  V NAL+++
Sbjct: 229 SILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRT----MFDASGAVGNALISM 284

Query: 331 YWKCGKVNEARDIFNQ--MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV 388
           Y K G V  AR I  Q  + + D++++ A+L+ YV  G I  A+ +F ++++ ++++WT 
Sbjct: 285 YAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTA 344

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG 448
           MI G  QNG   + +++F  M  EG +P  +  A  +++ + + +L +G+Q+HA  + SG
Sbjct: 345 MIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSG 404

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTM-PNVDSVSWNAMIAALGQHGNGARAIELY 507
              S S GNAL TMYA+ G +  A  VFN +  N D+VSW +MI AL QHG G  AIEL+
Sbjct: 405 EALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELF 464

Query: 508 EQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR 567
           EQML  GI PD IT++ VLSAC H GLV++GR YF+ M   + I P   HYA  +DL  R
Sbjct: 465 EQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGR 524

Query: 568 AGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627
           AG   EA   ++++P +P    W +LL+ C+++ N+DL   AAE+L  + P+++G Y  L
Sbjct: 525 AGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSAL 584

Query: 628 SNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYL 687
           +N+Y++ G+WDDAA++RKLM+ RGVKKE G SW+++ NK HVF V+D  HP+   +YK +
Sbjct: 585 ANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMM 644

Query: 688 EQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNL 747
           +++  E++K+G+ PDT+ VLHD+E + K+  L  HSEKLA+AFG++  P   T+R++KNL
Sbjct: 645 DKIWKEIKKMGFAPDTESVLHDLEVEVKDQILRYHSEKLAIAFGIISTPENTTLRIMKNL 704

Query: 748 RICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           R+C DCHNA KF+SK+V REI+VRD  RFHHF+DG CSC DYW
Sbjct: 705 RVCNDCHNAIKFISKLVDREIIVRDATRFHHFKDGSCSCKDYW 747



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 131/495 (26%), Positives = 230/495 (46%), Gaps = 64/495 (12%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           + + VH+ ++  G      + N L+++Y K+  L  A+ +FD +   +  +   +I+ + 
Sbjct: 125 IGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHM 184

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPDNFT 151
               V LA   F    L  RD V +N+MI   + +   + A++ F  + +D  +KPD F+
Sbjct: 185 NCGRVDLALAQFE--LLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFS 242

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             S LSA A + E+     Q+H  +V++      +V NALIS+Y K              
Sbjct: 243 LASALSACANL-EKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEI-------- 293

Query: 212 AARRVFDE--MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
            ARR+ ++  + + D +++T ++ GYVK   +  AR+  + + +   VAW A+I GYV  
Sbjct: 294 -ARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQN 352

Query: 270 ELKMLMLRI---------QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
            L    + +         + + FT  +++SA ++      GKQ+HA  +R+    +P   
Sbjct: 353 GLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPS-- 410

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPE-RDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
             V NAL T+Y K G +N AR +FN + + RD VSW +++ A    GL +EA  LFE   
Sbjct: 411 --VGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFE--- 465

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
                                       QM   G KP    + G +++C   G +E GR 
Sbjct: 466 ----------------------------QMLTLGIKPDHITYVGVLSACTHGGLVEQGRS 497

Query: 440 LHAQL--VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQ 496
               +  VH   D +LS    ++ ++ R G+++ A      MP   D ++W +++++   
Sbjct: 498 YFDLMKNVHK-IDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKV 556

Query: 497 HGNGARAIELYEQML 511
           + N   A    E++L
Sbjct: 557 YKNVDLAKVAAERLL 571



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 189/406 (46%), Gaps = 46/406 (11%)

Query: 17  ASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE- 75
           AS L  C     +  S  + +H +++ + F     + N LI +Y KS  +  AR + ++ 
Sbjct: 244 ASALSACANLEKL--SFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQS 301

Query: 76  -IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAI 134
            I   D++A T L+  Y    ++  AR++FN   LK  D V + AMI  Y  N   + AI
Sbjct: 302 GISDLDVIAFTALLNGYVKLGDITPARQIFN--SLKDPDVVAWTAMIVGYVQNGLNNDAI 359

Query: 135 ELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
           E+F+ M  +  +P++FT  ++LSA +  V       Q+H + ++SG  L  SV NAL ++
Sbjct: 360 EVFKTMVSEGPRPNSFTLAAMLSA-SSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTM 418

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPE-RDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
           Y K  S         +  AR+VF+ + + RD +SWT+M+    ++   + A E  +    
Sbjct: 419 YAKAGS---------INGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFE---- 465

Query: 254 NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
                             +ML L I+ D  TY  V+SAC + GL   G+  +  L++   
Sbjct: 466 ------------------QMLTLGIKPDHITYVGVLSACTHGGLVEQGRS-YFDLMKNVH 506

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA---YVSAGLID 369
           K  P  S      +V L+ + G + EA      MP E D+++W ++LS+   Y +  L  
Sbjct: 507 KIDPTLSHYA--CMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAK 564

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
            A      +   N  +++ + +  +  G  ++  K+   M+  G K
Sbjct: 565 VAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVK 610


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 307/744 (41%), Positives = 445/744 (59%), Gaps = 38/744 (5%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
           NR I  Y +  +   A ++F+ + +   V    +I+ Y +++    AR++F K P   RD
Sbjct: 64  NRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMP--DRD 121

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALAL--IVEEEKQCMQ 171
            + +N M++ Y  N N  AA  LF  M   DV     ++ ++LS  A    VEE ++   
Sbjct: 122 LISWNVMLSGYVKNGNLSAARALFNQMPEKDV----VSWNAMLSGFAQNGFVEEARKIFD 177

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
               +VK+         N L+S YV+            +  ARR+FD   + + +SW  +
Sbjct: 178 Q--MLVKNEISW-----NGLLSAYVQ---------NGRIEDARRLFDSKMDWEIVSWNCL 221

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR----ELKMLMLRIQL-DEFTYT 286
           M GYV+   LD AR   D M     ++WN +I+GY       E + L   + + D F +T
Sbjct: 222 MGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWT 281

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
           +++S    +G+     ++         +  PE +    NA++  Y +  ++ +AR++F+Q
Sbjct: 282 AMVSGFVQNGMLDEATRIF--------EEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQ 333

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
           MP R+  SWN +++ Y   G ID+AK LF+ M +R+ +SW  MISG AQ+G  EE L LF
Sbjct: 334 MPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLF 393

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
            +M+ +G      A A A++SCA + ALE G+QLH +LV +G+ +   AGNAL+ MY +C
Sbjct: 394 IKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKC 453

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G +E A  VF  +   D VSWN MIA   +HG G  A+ L+E M K  I PD +T + VL
Sbjct: 454 GSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVL 512

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
           SAC+H GLV +G  YF +M+  YGI     HY   IDLL RAG+  EA +++ S+PF P 
Sbjct: 513 SACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPD 572

Query: 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKL 646
           A  W ALL   RIHG+ +LG +AAE++F++ P ++G YVLLSN+YA  GRW +   +R  
Sbjct: 573 AATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSK 632

Query: 647 MRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFV 706
           MRD+GVKK PG SW+E+ NK H+F V D +HPEA+ +Y YLE+L LE++K G+V  TK V
Sbjct: 633 MRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLV 692

Query: 707 LHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGR 766
           LHD+E ++KE+ L  HSEKLAVAFG++ +P G  +RV+KNLR+C DCHNA K +SK+  R
Sbjct: 693 LHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQR 752

Query: 767 EIVVRDGKRFHHFRDGKCSCGDYW 790
           +I+VRD  RFHHF +G CSCGDYW
Sbjct: 753 QIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 193/442 (43%), Gaps = 75/442 (16%)

Query: 222 ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR------------ 269
           + D + W   ++ Y++    ++A    +GM     V +NA+ISGY+              
Sbjct: 57  DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEK 116

Query: 270 --ELKMLMLRIQL----------------------DEFTYTSVISACANSGLFRLGKQV- 304
             +  ++   + L                      D  ++ +++S  A +G     +++ 
Sbjct: 117 MPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIF 176

Query: 305 HAYLLRTEAKPTPEFSLPVNNALV--------------TLYWKC--------GKVNEARD 342
              L++ E       S  V N  +               + W C         ++++AR 
Sbjct: 177 DQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARS 236

Query: 343 IFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG 402
           +F++MP RD +SWN +++ Y   GL+ EA+ LFE +  R++ +WT M+SG  QNG  +E 
Sbjct: 237 LFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEA 296

Query: 403 LKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITM 462
            ++F +M  +     +   AG + S      +E  R+L  Q+       + S+ N ++T 
Sbjct: 297 TRIFEEMPEKNEVSWNAMIAGYVQS----QQIEKARELFDQMP----SRNTSSWNTMVTG 348

Query: 463 YARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF 522
           YA+CG ++ A  +F+ MP  D +SW AMI+   Q G    A+ L+ +M ++G + +R   
Sbjct: 349 YAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSAL 408

Query: 523 LTVLSACNHAGLVKEGRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579
              LS+C     ++ G++    +HG     G   G       + +  + G   EA DV +
Sbjct: 409 ACALSSCAEIAALELGKQ----LHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFE 464

Query: 580 SLPFKPSAPIWEALLAGCRIHG 601
            +  K     W  ++AG   HG
Sbjct: 465 DITEKDIVS-WNTMIAGYARHG 485



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 162/378 (42%), Gaps = 86/378 (22%)

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR------------------- 379
           E+++  + + + D+V WN  +SAY+  G  + A S+F  MR                   
Sbjct: 47  ESKNSDSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNK 106

Query: 380 ------------ERNLLSWTV-------------------------------MISGLAQN 396
                       +R+L+SW V                               M+SG AQN
Sbjct: 107 FDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQN 166

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
           G+ EE  K+F QM ++     + ++ G +++    G +E+ R    +L  S  D  + + 
Sbjct: 167 GFVEEARKIFDQMLVKN----EISWNGLLSAYVQNGRIEDAR----RLFDSKMDWEIVSW 218

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
           N L+  Y R   ++ A  +F+ MP  D +SWN MI    Q+G  + A  L+E++     +
Sbjct: 219 NCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEEL----PI 274

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
            D   +  ++S     G++ E  R FE M         E  +   I    ++ +  +A++
Sbjct: 275 RDVFAWTAMVSGFVQNGMLDEATRIFEEMP-----EKNEVSWNAMIAGYVQSQQIEKARE 329

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH-AGTYVLLSNMYANLG 635
           + D +P + ++  W  ++ G    GNID     A+ LF  MP     ++  + + YA  G
Sbjct: 330 LFDQMPSRNTSS-WNTMVTGYAQCGNID----QAKILFDEMPQRDCISWAAMISGYAQSG 384

Query: 636 RWDDAARVR-KLMRDRGV 652
           + ++A  +  K+ RD G+
Sbjct: 385 QSEEALHLFIKMKRDGGI 402



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L + +H  ++ +GF+      N L+ +Y K   +  A  +F++I + DIV+  T+IA Y+
Sbjct: 423 LGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYA 482

Query: 93  ASDNVKLAREMFNKTPLKMR-DTVFYNAMITAYSHNSNGHAAIELFRDMRRD 143
                K A  +F    + ++ D V    +++A SH       +E F  M ++
Sbjct: 483 RHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQN 534


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 298/790 (37%), Positives = 470/790 (59%), Gaps = 64/790 (8%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF 73
           N Y + L+LC   +  T   A+++H+H+I +   P   ++N LI  Y K   + YA  +F
Sbjct: 10  NHYCALLKLCCETHNFTK--AKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVF 67

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
           D++P P++ +  T+++AYS    V     +F+  P   RD V +N++I+ Y+     + +
Sbjct: 68  DQMPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMP--RRDGVSWNSLISGYAGCGLIYQS 125

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM----QMHCTVVKSGTGLFTSVLN 189
           ++ +  M ++D    +F    +  +  LI+  ++ C+    Q+H  VVK G   +  V +
Sbjct: 126 VKAYNLMLKND---GSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGS 182

Query: 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD 249
            L+ +Y         S   ++  AR+VFDE+PE++ + + T++ G ++   ++ ++    
Sbjct: 183 PLVDMY---------SKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFF 233

Query: 250 GMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRL 300
            M E   ++W ++I+G+    L         +M +  +Q+D++T+ SV++AC      + 
Sbjct: 234 EMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQE 293

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           GKQVHAY++RT+ K     ++ V +ALV +Y KC                          
Sbjct: 294 GKQVHAYIIRTDYKD----NIFVASALVDMYCKCKN------------------------ 325

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
                  I  A+++F+ M  +N++SWT M+ G  QNGY EE +K FS M+  G +P D+ 
Sbjct: 326 -------IKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFT 378

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
               I+SCA L +LE G Q HA+ + SG  S ++  NAL+T+Y +CG +E ++ +FN + 
Sbjct: 379 LGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEIS 438

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
             D V+W A+++   Q G     I L+E ML  G+ PD++TF+ VLSAC+ AGLV++G +
Sbjct: 439 FKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQ 498

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
            FE+M   +GI P +DHY   IDL  RAG+  EA++ I+ +PF P A  W  LL+ CR +
Sbjct: 499 IFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFY 558

Query: 601 GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSW 660
           GN+D+G  AAE L +L PH+  +YVLLS++YA  G+W++ AR+RK MRD+G++KEPGCSW
Sbjct: 559 GNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSW 618

Query: 661 IEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALS 720
           I+  N+VHVF  DD ++P +  +Y  LE+L  +M K GYVPD   VLHD+   +K   L+
Sbjct: 619 IKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKMIKEGYVPDMNSVLHDVGDSEKIKMLN 678

Query: 721 THSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFR 780
            HSEKLA+AFGL+ +P G  +RV+KNLR+C DCHNA K++SK+  REI+VRD  RFH F+
Sbjct: 679 HHSEKLAIAFGLLFIPPGLPIRVVKNLRVCSDCHNATKYISKITNREILVRDTARFHLFK 738

Query: 781 DGKCSCGDYW 790
           DG CSCGD+W
Sbjct: 739 DGTCSCGDFW 748


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  586 bits (1510), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 306/744 (41%), Positives = 444/744 (59%), Gaps = 38/744 (5%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
           NR I  Y +  +   A ++F+ + +   V    +I+ Y +++    AR++F K P   RD
Sbjct: 64  NRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMP--DRD 121

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALAL--IVEEEKQCMQ 171
            + +N M++ Y  N N  AA  LF  M   DV     ++ ++LS  A    VEE ++   
Sbjct: 122 LISWNVMLSGYVKNGNLSAARALFNQMPEKDV----VSWNAMLSGFAQNGFVEEARKIFD 177

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
               +VK+         N L+S YV+            +  ARR+FD   + + +SW  +
Sbjct: 178 Q--MLVKNEISW-----NGLLSAYVQ---------NGRIEDARRLFDSKMDWEIVSWNCL 221

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR----ELKMLMLRIQL-DEFTYT 286
           M GYV+   LD AR   D M     ++WN +I+GY       E + L   + + D F +T
Sbjct: 222 MGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWT 281

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
           +++S    +G+     ++         +  PE +    NA++  Y +  ++ +AR++F+Q
Sbjct: 282 AMVSGFVQNGMLDEATRIF--------EEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQ 333

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
           MP R+  SWN +++ Y   G ID+AK LF+ M +R+ +SW  MISG AQ+G  EE L LF
Sbjct: 334 MPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLF 393

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
            +M+ +G      A A A++SCA + ALE G+QLH +LV +G+ +   AGNAL+ MY +C
Sbjct: 394 IKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKC 453

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G +E A  VF  +   D VSWN MIA   +HG G  A+ L+E M K  I PD +T + VL
Sbjct: 454 GSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVL 512

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
           SAC+H G V +G  YF +M+  YGI     HY   IDLL RAG+  EA +++ S+PF P 
Sbjct: 513 SACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPD 572

Query: 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKL 646
           A  W ALL   RIHG+ +LG +AAE++F++ P ++G YVLLSN+YA  GRW +   +R  
Sbjct: 573 AATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSK 632

Query: 647 MRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFV 706
           MRD+GVKK PG SW+E+ NK H+F V D +HPEA+ +Y YLE+L LE++K G+V  TK V
Sbjct: 633 MRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLV 692

Query: 707 LHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGR 766
           LHD+E ++KE+ L  HSEKLAVAFG++ +P G  +RV+KNLR+C DCHNA K +SK+  R
Sbjct: 693 LHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQR 752

Query: 767 EIVVRDGKRFHHFRDGKCSCGDYW 790
           +I+VRD  RFHHF +G CSCGDYW
Sbjct: 753 QIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 193/442 (43%), Gaps = 75/442 (16%)

Query: 222 ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR------------ 269
           + D + W   ++ Y++    ++A    +GM     V +NA+ISGY+              
Sbjct: 57  DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEK 116

Query: 270 --ELKMLMLRIQL----------------------DEFTYTSVISACANSGLFRLGKQV- 304
             +  ++   + L                      D  ++ +++S  A +G     +++ 
Sbjct: 117 MPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIF 176

Query: 305 HAYLLRTEAKPTPEFSLPVNNALV--------------TLYWKC--------GKVNEARD 342
              L++ E       S  V N  +               + W C         ++++AR 
Sbjct: 177 DQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARS 236

Query: 343 IFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG 402
           +F++MP RD +SWN +++ Y   GL+ EA+ LFE +  R++ +WT M+SG  QNG  +E 
Sbjct: 237 LFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEA 296

Query: 403 LKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITM 462
            ++F +M  +     +   AG + S      +E  R+L  Q+       + S+ N ++T 
Sbjct: 297 TRIFEEMPEKNEVSWNAMIAGYVQS----QQIEKARELFDQMP----SRNTSSWNTMVTG 348

Query: 463 YARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF 522
           YA+CG ++ A  +F+ MP  D +SW AMI+   Q G    A+ L+ +M ++G + +R   
Sbjct: 349 YAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSAL 408

Query: 523 LTVLSACNHAGLVKEGRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579
              LS+C     ++ G++    +HG     G   G       + +  + G   EA DV +
Sbjct: 409 ACALSSCAEIAALELGKQ----LHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFE 464

Query: 580 SLPFKPSAPIWEALLAGCRIHG 601
            +  K     W  ++AG   HG
Sbjct: 465 DITEKDIVS-WNTMIAGYARHG 485



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 162/378 (42%), Gaps = 86/378 (22%)

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR------------------- 379
           E+++  + + + D+V WN  +SAY+  G  + A S+F  MR                   
Sbjct: 47  ESKNSDSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNK 106

Query: 380 ------------ERNLLSWTV-------------------------------MISGLAQN 396
                       +R+L+SW V                               M+SG AQN
Sbjct: 107 FDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQN 166

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
           G+ EE  K+F QM ++     + ++ G +++    G +E+ R    +L  S  D  + + 
Sbjct: 167 GFVEEARKIFDQMLVKN----EISWNGLLSAYVQNGRIEDAR----RLFDSKMDWEIVSW 218

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
           N L+  Y R   ++ A  +F+ MP  D +SWN MI    Q+G  + A  L+E++     +
Sbjct: 219 NCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEEL----PI 274

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
            D   +  ++S     G++ E  R FE M         E  +   I    ++ +  +A++
Sbjct: 275 RDVFAWTAMVSGFVQNGMLDEATRIFEEMP-----EKNEVSWNAMIAGYVQSQQIEKARE 329

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH-AGTYVLLSNMYANLG 635
           + D +P + ++  W  ++ G    GNID     A+ LF  MP     ++  + + YA  G
Sbjct: 330 LFDQMPSRNTSS-WNTMVTGYAQCGNID----QAKILFDEMPQRDCISWAAMISGYAQSG 384

Query: 636 RWDDAARVR-KLMRDRGV 652
           + ++A  +  K+ RD G+
Sbjct: 385 QSEEALHLFIKMKRDGGI 402



 Score = 45.8 bits (107), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L + +H  ++ +GF+      N L+ +Y K   +  A  +F++I + DIV+  T+IA Y+
Sbjct: 423 LGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYA 482

Query: 93  ASDNVKLAREMFNKTPLKMR-DTVFYNAMITAYSHNSNGHAAIELFRDMRRD 143
                K A  +F    + ++ D V    +++A SH       +E F  M ++
Sbjct: 483 RHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQN 534


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 317/797 (39%), Positives = 465/797 (58%), Gaps = 39/797 (4%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVY----- 68
           + YA  LQLC  R  +  S  R++HAH + +G     ++ N L+  Y  S+ +       
Sbjct: 210 DHYARLLQLC--RTAVNPSAGRAIHAHAVKAGLLVSTYLCNNLLAYYA-SVGVSRGCFRE 266

Query: 69  ARTLFDEIPQPDIVART--TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSH 126
           AR LFD+IP     A T  +L++ Y+ S  +  A  +F + P   RD V +  MI   + 
Sbjct: 267 ARCLFDDIPYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMP--DRDAVSWTIMIVGLNR 324

Query: 127 NSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS 186
           +     A++ F DM  +   P  FT T+VLS+ A + E      ++H  VVK G      
Sbjct: 325 SGRFWDAVKTFLDMVSEGFAPSQFTLTNVLSSCAAM-EACGVGRKVHPFVVKLGLSSCVP 383

Query: 187 VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAARE 246
           V N+++ +Y KC  +           AR VF+ M  R   SW  M++ Y     ++ A  
Sbjct: 384 VANSVLYMYGKCGDAE---------TARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVS 434

Query: 247 FLDGMSENVGVAWNALISGYVHRELKMLMLR----------IQLDEFTYTSVISACANSG 296
             + M E   V+WN +I+GY    L  + L+          ++ D FT TSV+SACAN  
Sbjct: 435 MFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLR 494

Query: 297 LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL--VS 354
           + ++GKQ+H+Y+LRT    + +    + NAL++ Y K G V  AR I +Q    DL  +S
Sbjct: 495 MLKMGKQMHSYILRTGMPCSSQ----IMNALISTYAKSGSVETARRIMDQAVVADLNVIS 550

Query: 355 WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF 414
           + A+L  YV  G   +A+ +F+ M  R++++WT MI G  QNG  +E ++LF  M L G 
Sbjct: 551 FTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGP 610

Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
           +P  +  A  +++CA L  L+ G+Q+H + + S  + S+S  NA+IT+YAR G V  A  
Sbjct: 611 EPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARR 670

Query: 475 VFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533
           VF+ +    ++++W +MI A+ QHG G +A+ L+E+M++ G+ PD IT++ VLSAC HAG
Sbjct: 671 VFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAG 730

Query: 534 LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEAL 593
            V +G+RY+E M   +GI P   HYA  +DL  RAG  +EA + I  +P  P   +W +L
Sbjct: 731 FVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSL 790

Query: 594 LAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653
           LA CR+  N DL   AA +L  + PH++G Y  L+N+Y+  GRW+DAAR+ KL +D+GVK
Sbjct: 791 LAACRVRKNADLAELAAGKLLSIDPHNSGAYSALANVYSACGRWNDAARIWKLRKDKGVK 850

Query: 654 KEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESD 713
           KE G SW  V  KVHVF  DD  HP+  ++Y+   ++  E++K G+VPD   VLHD++ +
Sbjct: 851 KETGFSWTHVRGKVHVFGADDVLHPQRDSIYRKAAEMWEEIKKAGFVPDLNSVLHDVDDE 910

Query: 714 QKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDG 773
            KE  LS HSEKLA+AFGL+  P   T+R++KNLR+C DCH A KF+SK V REI+VRD 
Sbjct: 911 LKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKFISKFVDREIIVRDA 970

Query: 774 KRFHHFRDGKCSCGDYW 790
            RFHHFRDG CSC DYW
Sbjct: 971 TRFHHFRDGYCSCKDYW 987


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 314/802 (39%), Positives = 466/802 (58%), Gaps = 48/802 (5%)

Query: 1   MMMKNADYIRTLANR---YASQLQLCDPRNPITSSLARSVHAHMISSGF-KPREHIINRL 56
           M M+ ++  R L +R    + Q      R P T +  ++  +    +   K    I N +
Sbjct: 1   MAMRGSNRFRQLHSRSCLRSLQTTTTANRKPSTRNQPKTTSSLATDADIVKWNIAITNHM 60

Query: 57  IDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVF 116
            +  C S     A  LF+ +P+   ++   +I+   ++D   LAR++F K P   RD V 
Sbjct: 61  RNGQCDS-----ALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMP--TRDLVS 113

Query: 117 YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALAL--IVEEEKQCM-QMH 173
           +N MI+      N  AA  LF  M   DV     ++ ++LS  A    V+E K+   +M 
Sbjct: 114 WNVMISGCVRYRNLRAARLLFDQMPERDV----VSWNAMLSGYAQNGYVKEAKEIFDEMP 169

Query: 174 CTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMT 233
           C    S         N +++ YV+            +  ARR+F+   + + +SW  MM 
Sbjct: 170 CKNSIS--------WNGMLAAYVQ---------NGRIEDARRLFESKADWELISWNCMMG 212

Query: 234 GYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRI-----QLDEFTYTSV 288
           GYVK + L  AR   D M E   V+WN +ISGY      +   R+       D FT+T++
Sbjct: 213 GYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAM 272

Query: 289 ISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
           +S    +G+    ++V   +        PE +    NA++  Y +C ++++AR++F  MP
Sbjct: 273 VSGYVQNGMLDEARRVFDGM--------PEKNSVSWNAIIAGYVQCKRMDQARELFEAMP 324

Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQ 408
            +++ SWN +++ Y   G I +A++ F+ M +R+ +SW  +I+G AQ+GYGEE L LF +
Sbjct: 325 CQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVE 384

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
           M+ +G +     F   +++CA + ALE G+Q+H ++V +G +S    GNAL+ MY +CG 
Sbjct: 385 MKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGN 444

Query: 469 VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
           ++ A  VF  +   + VSWN MIA   +HG G  A+ L+E M K GILPD +T + VLSA
Sbjct: 445 IDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSA 504

Query: 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
           C+H GLV +G  YF +M   YGI     HY   IDLL RAG+  +A++++ ++PF+P A 
Sbjct: 505 CSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAA 564

Query: 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648
            W ALL   RIHGN +LG +AA+ +F++ P ++G YVLLSN+YA  GRW D  R+R  MR
Sbjct: 565 TWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMR 624

Query: 649 DRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLH 708
           DRGVKK PG SW+EV NK+H F V D+ HPE   +Y +LE+L L+M+K GYV  TK VLH
Sbjct: 625 DRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLH 684

Query: 709 DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREI 768
           D+E ++K + L  HSEKLAVAFG++ +P G  +RV+KNLR+C DCHNA K +SK+VGR I
Sbjct: 685 DVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLI 744

Query: 769 VVRDGKRFHHFRDGKCSCGDYW 790
           ++RD  RFHHF  G+CSCGDYW
Sbjct: 745 ILRDSHRFHHFNGGQCSCGDYW 766


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 298/739 (40%), Positives = 437/739 (59%), Gaps = 58/739 (7%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
           N +I  Y ++ +   AR LFDE+P+ D+V+   +I  Y  + N+  ARE+F + P   RD
Sbjct: 94  NAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMP--ERD 151

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDM-RRDDVKPDNFTFTSVLSALALIVEEEKQCMQM 172
              +N +++ Y+ N     A  +F  M  ++DV     ++ ++LSA     + E+ C+  
Sbjct: 152 VCSWNTILSGYAQNGCVDDARRVFDRMPEKNDV-----SWNALLSAYVQNSKLEEACV-- 204

Query: 173 HCTVVKSGTGLFTSVLN-ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
                     LF S  N AL+S    C+   FV  + ++  AR+ FD M  RD +SW T+
Sbjct: 205 ----------LFGSRENWALVSW--NCLLGGFVKKKKIV-EARQFFDSMKVRDVVSWNTI 251

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           +TGY +N  +D AR+  D    +    W A++SGY+                        
Sbjct: 252 ITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQN---------------------- 289

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
                  R+ ++      R      PE +    NA++  Y +  +V  A+++F+ MP R+
Sbjct: 290 -------RMVEEARELFDRM-----PERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRN 337

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
           + +WN +++ Y   G I EAK+LF+ M +R+ +SW  MI+G +Q+G+  E L+LF  M  
Sbjct: 338 VSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMER 397

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
           EG +    +F+ A+++CA + ALE G+QLH +LV  GY++    GNAL+ MY +CG +E 
Sbjct: 398 EGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEE 457

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
           AN +F  M   D VSWN MIA   +HG G  A+  +E M +EG+ PD  T + VLSAC+H
Sbjct: 458 ANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSH 517

Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
            GLV +GR+YF TM   YG+ P   HYA  +DLL RAG   EA +++ ++PF+P A IW 
Sbjct: 518 TGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWG 577

Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
            LL   R+HGN +L   AA+++F + P ++G YVLLSN+YA+ GRW D  ++R  MRD+G
Sbjct: 578 TLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKG 637

Query: 652 VKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDME 711
           VKK PG SWIE+ NK H F V D  HPE   ++ +LE L L M+K GYV  T  VLHD+E
Sbjct: 638 VKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAGYVSKTSVVLHDVE 697

Query: 712 SDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVR 771
            ++KE  +  HSE+LAVA+G+M++  G  +RV+KNLR+C DCHNA K+M+KV GR I++R
Sbjct: 698 EEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMAKVTGRLIILR 757

Query: 772 DGKRFHHFRDGKCSCGDYW 790
           D  RFHHF+DG CSCGDYW
Sbjct: 758 DNNRFHHFKDGSCSCGDYW 776



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 131/514 (25%), Positives = 219/514 (42%), Gaps = 89/514 (17%)

Query: 188 LNALISVYVKCVS-SPFVSSRS-----LMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
           LN L   Y    S S F SS+S     +  +  +   +  + D   W   ++ Y++    
Sbjct: 16  LNGLKRRYNNANSASNFHSSKSSTQTQIQKSQTKPLPKSGDSDIKEWNVAISSYMRTGRC 75

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS-ACANSGLFR- 299
             A      M     V++NA+ISGY+ R  +  + R+  DE     ++S      G  R 
Sbjct: 76  SEALRVFKRMPRWSSVSYNAMISGYL-RNGEFELARMLFDEMPERDLVSWNVMIKGYVRN 134

Query: 300 --LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA 357
             LGK    +      +  PE  +   N +++ Y + G V++AR +F++MPE++ VSWNA
Sbjct: 135 RNLGKARELF------ERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNA 188

Query: 358 ILSAYVSAGLID-------------------------------EAKSLFEAMRERNLLSW 386
           +LSAYV    ++                               EA+  F++M+ R+++SW
Sbjct: 189 LLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSW 248

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
             +I+G AQNG  +E  +LF +  +          +G I +      +E  R+L  ++  
Sbjct: 249 NTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQN----RMVEEARELFDRMPE 304

Query: 447 ----------SGYDS-----------------SLSAGNALITMYARCGVVEAANCVFNTM 479
                     +GY                   ++S  N +IT YA+CG +  A  +F+ M
Sbjct: 305 RNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKM 364

Query: 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
           P  D VSW AMIA   Q G+   A+ L+  M +EG   +R +F + LS C     ++ G+
Sbjct: 365 PKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGK 424

Query: 540 RYFETMHGPY---GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           +    +HG     G   G       + + C+ G   EA D+   +  K     W  ++AG
Sbjct: 425 Q----LHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVS-WNTMIAG 479

Query: 597 CRIHGNIDLGIQAAEQLFQ--LMPHHAGTYVLLS 628
              HG  +  ++  E + +  L P  A    +LS
Sbjct: 480 YSRHGFGEEALRFFESMKREGLKPDDATMVAVLS 513



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 35/145 (24%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           ++S L  C   + +   L + +H  ++  G++    + N L+ +YCK   +  A  LF E
Sbjct: 407 FSSALSTCA--DVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKE 464

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +   DIV+  T+IA YS        R  F                         G  A+ 
Sbjct: 465 MAGKDIVSWNTMIAGYS--------RHGF-------------------------GEEALR 491

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALA 160
            F  M+R+ +KPD+ T  +VLSA +
Sbjct: 492 FFESMKREGLKPDDATMVAVLSACS 516


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  576 bits (1484), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 291/793 (36%), Positives = 463/793 (58%), Gaps = 71/793 (8%)

Query: 11  TLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYAR 70
           +L+N Y   L+ C           + +H H+I +   P   ++N L+  Y K  ++ YAR
Sbjct: 13  SLSNHYCELLKHCRD--------TKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYAR 64

Query: 71  TLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNG 130
            +FD++PQ ++ +  TL+++YS    +     +F+  P   RD V +N++I+AY+     
Sbjct: 65  RVFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMP--TRDMVSWNSLISAYAGRGFL 122

Query: 131 HAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC----MQMHCTVVKSGTGLFTS 186
             +++ +  M    +    F    +  +  LI+  ++ C    +Q+H  VVK G   +  
Sbjct: 123 LQSVKAYNLM----LYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVF 178

Query: 187 VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAARE 246
           V + L+ +Y         S   L+  AR+ FDEMPE++ + + T++ G ++   ++ +R+
Sbjct: 179 VGSPLVDMY---------SKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQ 229

Query: 247 FLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGL 297
               M E   ++W A+I+G+    L         +M +  +++D++T+ SV++AC     
Sbjct: 230 LFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMA 289

Query: 298 FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA 357
            + GKQVHAY++RT+ +     ++ V +ALV +Y KC                       
Sbjct: 290 LQEGKQVHAYIIRTDYQD----NIFVGSALVDMYCKCKS--------------------- 324

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
                     I  A+++F  M  +N++SWT M+ G  QNGY EE +K+F  M+  G +P 
Sbjct: 325 ----------IKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPD 374

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
           D+     I+SCA L +LE G Q H + + SG  S ++  NAL+T+Y +CG +E ++ +F+
Sbjct: 375 DFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFS 434

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKE 537
            M  VD VSW A+++   Q G     + L+E ML  G  PD++TF+ VLSAC+ AGLV++
Sbjct: 435 EMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQK 494

Query: 538 GRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
           G + FE+M   + I P EDHY   IDL  RAG+  EA+  I+ +PF P A  W +LL+ C
Sbjct: 495 GNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSC 554

Query: 598 RIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPG 657
           R H N+++G  AAE L +L PH+  +Y+LLS++YA  G+W++ A +RK MRD+G++KEPG
Sbjct: 555 RFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPG 614

Query: 658 CSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEY 717
           CSWI+  N+VH+F  DD ++P +  +Y  LE+L  +M + GYVPD   VLHD++  +K  
Sbjct: 615 CSWIKYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYVPDMNSVLHDVDDSEKIK 674

Query: 718 ALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFH 777
            L+ HSEKLA+AFGL+ +P G  +RV+KNLR+CGDCHNA K++SK+  REI+VRD  RFH
Sbjct: 675 MLNHHSEKLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKYISKITQREILVRDAARFH 734

Query: 778 HFRDGKCSCGDYW 790
            F+DG+CSCGD+W
Sbjct: 735 LFKDGRCSCGDFW 747


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 296/757 (39%), Positives = 433/757 (57%), Gaps = 100/757 (13%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R VHA ++ SG +P  ++ N L+ +Y K   L  AR +FD I   +IV+ T +I A+ A
Sbjct: 115 GREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVA 174

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                                   N  + AY          + +  M+    KPD  TF 
Sbjct: 175 G-----------------------NQNLEAY----------KCYETMKLAGCKPDKVTFV 201

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           S+L+A     E  +   ++H  + K+G  L   V  +L+ +Y KC           +  A
Sbjct: 202 SLLNAFT-NPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGD---------ISKA 251

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           + +FD++PE++ ++WT ++ GY +   +D A E L+                      KM
Sbjct: 252 QVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLE----------------------KM 289

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
               +  ++ TYTS++  C        GK+VH Y++++         + V NAL+T+Y K
Sbjct: 290 QQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGR----EIWVVNALITMYCK 345

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
           CG + EAR +F  +P RD+V+W A+++ Y   G  DEA                      
Sbjct: 346 CGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEA---------------------- 383

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL 453
                    + LF +M+ +G KP    F  A+TSC+    L+ G+ +H QLVH+GY   +
Sbjct: 384 ---------IDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDV 434

Query: 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE 513
              +AL++MYA+CG ++ A  VFN M   + V+W AMI    QHG    A+E +EQM K+
Sbjct: 435 YLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQ 494

Query: 514 GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE 573
           GI PD++TF +VLSAC H GLV+EGR++F +M+  YGI P  +HY+ F+DLL RAG   E
Sbjct: 495 GIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEE 554

Query: 574 AKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN 633
           A++VI ++PF+P   +W ALL+ CRIH +++ G +AAE + +L P   G YV LSN+YA 
Sbjct: 555 AENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAA 614

Query: 634 LGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLE 693
            GR++DA +VR++M  R V KEPG SWIEVD KVHVF V+D +HPEA+ +Y  L +L  +
Sbjct: 615 AGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELGKLTEQ 674

Query: 694 MRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDC 753
           +++ GYVPDT+FVLHD++ +QK   L +HSE+LA+ +GLMK P G  +R++KNLR+CGDC
Sbjct: 675 IKEQGYVPDTRFVLHDVDEEQKVQTLCSHSERLAITYGLMKTPPGTPIRIVKNLRVCGDC 734

Query: 754 HNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           H A KF+SKVVGREI+ RD  RFHHF DG CSCGD+W
Sbjct: 735 HTASKFISKVVGREIIARDAHRFHHFVDGVCSCGDFW 771



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 128/496 (25%), Positives = 218/496 (43%), Gaps = 118/496 (23%)

Query: 27  NPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTT 86
           NP    + + VH  +  +G +    +   L+ +Y K   +  A+ +FD++P+ ++V  T 
Sbjct: 209 NPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTL 268

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           LIA Y+    V +                                 A+EL   M++ +V 
Sbjct: 269 LIAGYAQQGQVDV---------------------------------ALELLEKMQQAEVA 295

Query: 147 PDNFTFTSVLSALA--LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           P+  T+TS+L      L +E  K   ++H  +++SG G    V+NALI++Y KC      
Sbjct: 296 PNKITYTSILQGCTTPLALEHGK---KVHRYIIQSGYGREIWVVNALITMYCKCGG---- 348

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                +  AR++F ++P RD ++WT M+TGY +  + D A +    M +           
Sbjct: 349 -----LKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQ---------- 393

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV- 323
                        I+ D+ T+TS +++C++    + GK +H  L+         +SL V 
Sbjct: 394 ------------GIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHA------GYSLDVY 435

Query: 324 -NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
             +ALV++Y KCG +++AR +FNQM ER++V+W A+++     G   EA   FE M+++ 
Sbjct: 436 LQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQG 495

Query: 383 L----LSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSCAGLGALENG 437
           +    +++T ++S     G  EEG K F  M L+ G KP    +     SC         
Sbjct: 496 IKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHY-----SC--------- 541

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQ 496
                                 + +  R G +E A  V  TMP     S W A+++A   
Sbjct: 542 ---------------------FVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRI 580

Query: 497 HGNGARAIELYEQMLK 512
           H +  R     E +LK
Sbjct: 581 HSDVERGERAAENVLK 596



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 156/350 (44%), Gaps = 77/350 (22%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y S LQ C    P+     + VH ++I SG+     ++N LI +YCK   L  AR LF +
Sbjct: 301 YTSILQGCT--TPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGD 358

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P  D+V                                  + AM+T Y+       AI+
Sbjct: 359 LPHRDVVT---------------------------------WTAMVTGYAQLGFHDEAID 385

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALA--LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
           LFR M++  +KPD  TFTS L++ +    ++E K    +H  +V +G  L   + +AL+S
Sbjct: 386 LFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGK---SIHQQLVHAGYSLDVYLQSALVS 442

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
           +Y KC S         M  AR VF++M ER+ ++WT M+TG  ++     A E+ + M +
Sbjct: 443 MYAKCGS---------MDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKK 493

Query: 254 NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG-KQVHAYLLRTE 312
                                   I+ D+ T+TSV+SAC + GL   G K   +  L   
Sbjct: 494 Q----------------------GIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYG 531

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSA 361
            KP  E      +  V L  + G + EA ++   MP +   S W A+LSA
Sbjct: 532 IKPMVEHY----SCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSA 577



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 124/240 (51%), Gaps = 4/240 (1%)

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
             R+ + L+ +  +S L + G  +E L + + M L+G +     F G +  CA L +LE 
Sbjct: 55  GFRKVDTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQ 114

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           GR++HA ++ SG   +    N L++MYA+CG +  A  VF+ + + + VSW AMI A   
Sbjct: 115 GREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVA 174

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR-YFETMHGPYGIPPGE 555
                 A + YE M   G  PD++TF+++L+A  +  L++ G++ + E       + P  
Sbjct: 175 GNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRV 234

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
                 + +  + G  S+A+ + D LP K +   W  L+AG    G +D+ ++  E++ Q
Sbjct: 235 G--TSLVGMYAKCGDISKAQVIFDKLPEK-NVVTWTLLIAGYAQQGQVDVALELLEKMQQ 291


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 296/739 (40%), Positives = 437/739 (59%), Gaps = 58/739 (7%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
           N +I  Y ++ +   AR LFDE+P+ D+V+   +I  Y  + N+  ARE+F   P   RD
Sbjct: 99  NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMP--ERD 156

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDM-RRDDVKPDNFTFTSVLSALALIVEEEKQCMQM 172
              +N M++ Y+ N     A  +F  M  ++DV     ++ ++LSA     + E+ CM  
Sbjct: 157 VCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDV-----SWNALLSAYVQNSKMEEACM-- 209

Query: 173 HCTVVKSGTGLFTSVLN-ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
                     LF S  N AL+S    C+   FV  + ++  AR+ FD M  RD +SW T+
Sbjct: 210 ----------LFKSRENWALVSW--NCLLGGFVKKKKIV-EARQFFDSMNVRDVVSWNTI 256

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           +TGY ++  +D AR+  D         W A++SGY+   +        ++E         
Sbjct: 257 ITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRM--------VEE--------- 299

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
                             R      PE +    NA++  Y +  ++  A+++F+ MP R+
Sbjct: 300 -----------------ARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRN 342

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
           + +WN +++ Y   G I EAK+LF+ M +R+ +SW  MI+G +Q+G+  E L+LF QM  
Sbjct: 343 VSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMER 402

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
           EG +    +F+ A+++CA + ALE G+QLH +LV  GY++    GNAL+ MY +CG +E 
Sbjct: 403 EGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEE 462

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
           AN +F  M   D VSWN MIA   +HG G  A+  +E M +EG+ PD  T + VLSAC+H
Sbjct: 463 ANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSH 522

Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
            GLV +GR+YF TM   YG+ P   HYA  +DLL RAG   +A +++ ++PF+P A IW 
Sbjct: 523 TGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWG 582

Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
            LL   R+HGN +L   AA+++F + P ++G YVLLSN+YA+ GRW D  ++R  MRD+G
Sbjct: 583 TLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKG 642

Query: 652 VKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDME 711
           VKK PG SWIE+ NK H F V D  HPE   ++ +LE+L L M+K GYV  T  VLHD+E
Sbjct: 643 VKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVE 702

Query: 712 SDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVR 771
            ++KE  +  HSE+LAVA+G+M++  G  +RV+KNLR+C DCHNA K+M+++ GR I++R
Sbjct: 703 EEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILR 762

Query: 772 DGKRFHHFRDGKCSCGDYW 790
           D  RFHHF+DG CSCGDYW
Sbjct: 763 DNNRFHHFKDGSCSCGDYW 781



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 120/474 (25%), Positives = 205/474 (43%), Gaps = 83/474 (17%)

Query: 222 ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLD 281
           + D   W   ++ Y++    + A      M     V++N +ISGY+ R  +  + R   D
Sbjct: 61  DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYL-RNGEFELARKLFD 119

Query: 282 EFTYTSVIS-ACANSGLFR---LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
           E     ++S      G  R   LGK    + +       PE  +   N +++ Y + G V
Sbjct: 120 EMPERDLVSWNVMIKGYVRNRNLGKARELFEI------MPERDVCSWNTMLSGYAQNGCV 173

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLID---------------------------- 369
           ++AR +F++MPE++ VSWNA+LSAYV    ++                            
Sbjct: 174 DDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKK 233

Query: 370 ---EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
              EA+  F++M  R+++SW  +I+G AQ+G  +E  +LF +  ++         +G I 
Sbjct: 234 KIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQ 293

Query: 427 SCAGLGALENGRQLHAQLVH----------SGYDS-----------------SLSAGNAL 459
           +      +E  R+L  ++            +GY                   ++S  N +
Sbjct: 294 N----RMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTM 349

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           IT YA+CG +  A  +F+ MP  D VSW AMIA   Q G+   A+ L+ QM +EG   +R
Sbjct: 350 ITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNR 409

Query: 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPY---GIPPGEDHYARFIDLLCRAGKFSEAKD 576
            +F + LS C     ++ G++    +HG     G   G       + + C+ G   EA D
Sbjct: 410 SSFSSALSTCADVVALELGKQ----LHGRLVKGGYETGCFVGNALLLMYCKCGSIEEAND 465

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ--LMPHHAGTYVLLS 628
           +   +  K     W  ++AG   HG  ++ ++  E + +  L P  A    +LS
Sbjct: 466 LFKEMAGKDIVS-WNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLS 518



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 35/145 (24%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           ++S L  C   + +   L + +H  ++  G++    + N L+ +YCK   +  A  LF E
Sbjct: 412 FSSALSTCA--DVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKE 469

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +   DIV+  T+IA YS        R  F                         G  A+ 
Sbjct: 470 MAGKDIVSWNTMIAGYS--------RHGF-------------------------GEVALR 496

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALA 160
            F  M+R+ +KPD+ T  +VLSA +
Sbjct: 497 FFESMKREGLKPDDATMVAVLSACS 521


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 301/749 (40%), Positives = 436/749 (58%), Gaps = 64/749 (8%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           +P+++     I A+  +  V  A  +F   P   R T  YNAM+  YS N     A  LF
Sbjct: 35  EPEVIRSNKAITAHMRAGRVADAERLFAAMP--RRSTSTYNAMLAGYSANGRLPLAASLF 92

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           R + R    PDN+++ ++L ALA+             + +    GLF  +       Y  
Sbjct: 93  RAIPR----PDNYSYNTLLHALAV------------SSSLADARGLFDEMPVRDSVTYNV 136

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
            +SS   ++  L+  AR  FD  PE+D +SW  M+  YV+N  ++ AR   +  +E   +
Sbjct: 137 MISSH--ANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAI 194

Query: 258 AWNALISGYVH-------REL-----------------------KMLMLRIQLDE----- 282
           +WNAL+SGYV        REL                        M+  R   D      
Sbjct: 195 SWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRD 254

Query: 283 -FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEAR 341
            FT+T+V+S  A +G+    ++V   +        PE +    NA+V  Y +   ++EA+
Sbjct: 255 VFTWTAVVSGYAQNGMLEEARRVFDAM--------PERNAVSWNAMVAAYIQRRMMDEAK 306

Query: 342 DIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEE 401
           ++FN MP R++ SWN +L+ Y  AG+++EAK++F+ M +++ +SW  M++  +Q G  EE
Sbjct: 307 ELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEE 366

Query: 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALIT 461
            L+LF +M   G      AFA  +++CA + ALE G QLH +L+ +GY      GNAL+ 
Sbjct: 367 TLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLA 426

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           MY +CG +E A   F  M   D VSWN MIA   +HG G  A+E+++ M      PD IT
Sbjct: 427 MYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDIT 486

Query: 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581
            + VL+AC+H+GLV++G  YF +MH  +G+    +HY   IDLL RAG+ +EA D++  +
Sbjct: 487 LVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDM 546

Query: 582 PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAA 641
           PF+P + +W ALL   RIH N +LG  AAE++F+L P +AG YVLLSN+YA+ G+W DA 
Sbjct: 547 PFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDAR 606

Query: 642 RVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVP 701
           ++R +M +RGVKK PG SWIEV NKVH F   D  HPE + +Y +LE L + M+K GYV 
Sbjct: 607 KMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVS 666

Query: 702 DTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMS 761
            T  VLHD+E ++KE+ L  HSEKLAVA+G++ +P G  +RV+KNLR+CGDCHNAFK++S
Sbjct: 667 ATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYIS 726

Query: 762 KVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            + GR I++RD  RFHHFR G CSCGDYW
Sbjct: 727 AIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score = 47.8 bits (112), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 5/120 (4%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           +H  +I +G+     + N L+ +Y K   +  AR  F+E+ + D+V+  T+IA Y+    
Sbjct: 405 LHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGF 464

Query: 97  VKLAREMFN--KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD---DVKPDNFT 151
            K A E+F+  +T     D +    ++ A SH+      I  F  M  D     KP+++T
Sbjct: 465 GKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYT 524


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  570 bits (1469), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 300/791 (37%), Positives = 458/791 (57%), Gaps = 65/791 (8%)

Query: 13  ANRYASQLQLC-DPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYART 71
           +N Y + L+ C + RN    +  + +H  +I +   P   + N LI+ Y K   L  AR 
Sbjct: 5   SNYYTAALKFCCEARN---RAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARN 61

Query: 72  LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           +FD IPQP++ +  TL++AYS    ++  + +F+  P    D V +N++++ Y+ N    
Sbjct: 62  VFDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMP--NHDVVSWNSLLSGYAGNGLIS 119

Query: 132 AAIELFRDMRRD-DVKPDNFTFTS--VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL 188
            ++ ++  M +D  V  +  TF++  +LS+    V+  +Q   +H  + K G   +  V 
Sbjct: 120 ESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQ---IHGQIFKFGYQSYLFVG 176

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           + L+ +Y K            +  A R+F+E+PE++ + + TM+TG ++  ++  A +  
Sbjct: 177 SPLVDMYAKT---------GFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLF 227

Query: 249 DGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFR 299
           D M E   ++W  +I+G     L         +M +    +D+FT+ SV++AC       
Sbjct: 228 DNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALD 287

Query: 300 LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAIL 359
            GKQ+HAY++RT+ +     ++ V +AL+ +Y KC  V  A                   
Sbjct: 288 EGKQIHAYIIRTDYQD----NIFVGSALLDMYCKCRNVKYA------------------- 324

Query: 360 SAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY 419
                       +++F  MR +N++SWT M+ G  QNGY EE +++F  M+     P D+
Sbjct: 325 ------------EAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDF 372

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
                I+SCA L +LE G Q H Q + SG    ++  NALIT+Y +CG +E A+ +F+ M
Sbjct: 373 TLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEM 432

Query: 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
              D VSW A+++   Q G     I L+E ML  GI+PD +TF+ VLSAC+ AGLV++G 
Sbjct: 433 KIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGY 492

Query: 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI 599
            YFE M   + I P  DHY   IDLL RAG+  EAK+ I+ +PF P A  W  LL+ CR+
Sbjct: 493 HYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRL 552

Query: 600 HGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCS 659
           +GN+++G  AAE L +L P +  +Y+LLS++YA  G+WDD A++RK MR+ GVKKEPG S
Sbjct: 553 NGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHS 612

Query: 660 WIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYAL 719
           WI+  NKVH+F  DD + P +  +Y  LE L L+M + GYVPD  FVLHD+E  +K   L
Sbjct: 613 WIKYKNKVHIFSADDRSSPFSDQIYAKLESLYLKMIEEGYVPDMSFVLHDVEKSEKIKML 672

Query: 720 STHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHF 779
           + HSEKLA+AFGL+ +P G  +RV+KNLR+CGDCHNA K++S++  REI+VRD  RFH F
Sbjct: 673 NHHSEKLAIAFGLLFIPDGLQIRVVKNLRVCGDCHNATKYISRITQREILVRDAVRFHLF 732

Query: 780 RDGKCSCGDYW 790
           +DG CSCGD+W
Sbjct: 733 KDGVCSCGDFW 743


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  569 bits (1467), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 299/746 (40%), Positives = 437/746 (58%), Gaps = 58/746 (7%)

Query: 48  PREHII--NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFN 105
           PR   +  N +I  Y ++ K   AR LFD++P+ D+ +   ++  Y  +  +  AR +F+
Sbjct: 76  PRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFD 135

Query: 106 KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEE 165
             P K  D V +N++++ Y+ N     A E+F +M     + ++ ++  +L+A       
Sbjct: 136 LMPEK--DVVSWNSLLSGYAQNGYVDEAREVFDNM----PEKNSISWNGLLAAYVHNGRI 189

Query: 166 EKQCMQMHCTVVKSGTGLFTSVLN-ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERD 224
           E+ C+            LF S  +  LIS    C+   FV  + L G AR +FD+MP RD
Sbjct: 190 EEACL------------LFESKSDWDLISW--NCLMGGFVRKKKL-GDARWLFDKMPVRD 234

Query: 225 ELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFT 284
            +SW TM++GY +   L  AR   D         W A++SGYV   +        LDE  
Sbjct: 235 AISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGM--------LDE-- 284

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
                                    +T     PE +    NA++  Y +  K++ AR++F
Sbjct: 285 ------------------------AKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELF 320

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
             MP R++ SWN +++ Y   G I +A+  F+ M +R+ +SW  +I+G AQ+G+ EE L 
Sbjct: 321 ESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALN 380

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           +F +++ +G       F  A+++CA + ALE G+Q+H Q V  GY +    GNAL+ MY 
Sbjct: 381 MFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYF 440

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           +CG ++ AN  F  +   D VSWN M+A   +HG G +A+ ++E M   G+ PD IT + 
Sbjct: 441 KCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVG 500

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584
           VLSAC+H GL+  G  YF +M   YG+ P   HY   IDLL RAG+  EA+D+I ++PF+
Sbjct: 501 VLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQ 560

Query: 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVR 644
           P A  W ALL   RIHGN +LG +AAE +F++ P ++G YVLLSN+YA  GRW DA ++R
Sbjct: 561 PGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMR 620

Query: 645 KLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTK 704
             MRD GV+K PG SW+EV NK+H F V D +HPE + +Y YLE+L L+MR+ GYV  TK
Sbjct: 621 SKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTK 680

Query: 705 FVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVV 764
            VLHD+E ++KE+ L  HSEKLAVAFG++ +PGG  +RV+KNLR+C DCH+A K +SK+V
Sbjct: 681 LVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIV 740

Query: 765 GREIVVRDGKRFHHFRDGKCSCGDYW 790
           GR I++RD  RFHHF +G CSCGDYW
Sbjct: 741 GRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/261 (34%), Positives = 124/261 (47%), Gaps = 57/261 (21%)

Query: 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590
           + GL+  G  YF  M+  Y + P   HY   IDLL R  +  E                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEEG---------------- 819

Query: 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650
            ALL   RIHGN +LG +AA+  F++ P ++G                        MRD 
Sbjct: 820 -ALLGASRIHGNTELGEKAAQMFFKMGPQNSGI---------------------SKMRDV 857

Query: 651 GVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDM 710
           GV+K PG SW EV NK+H F V      E + +  +LE+L L+MR+              
Sbjct: 858 GVQKVPGYSWFEVQNKIHTFSVGLFLSRERENI-GFLEELDLKMRER------------- 903

Query: 711 ESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKN-LRICGDCHNAFKFMSKVVGREIV 769
             ++KE  L   SE LA A G++ +P G   RV+K  + +C DC +A K MSK+VGR I 
Sbjct: 904 -EEEKERTLKYLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRLIT 962

Query: 770 VRDGKRFHHFRDGKCSCGDYW 790
           +RD    H F +  CSCG+YW
Sbjct: 963 LRDS---HRFNESICSCGEYW 980



 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 110/445 (24%), Positives = 190/445 (42%), Gaps = 85/445 (19%)

Query: 224 DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDE- 282
           D L W   ++ +++N + D+A    + M     V++NA+ISGY+ R  K  + R   D+ 
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYL-RNSKFNLARNLFDQM 106

Query: 283 -----FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
                F++  +++    +   RLG     + L       PE  +   N+L++ Y + G V
Sbjct: 107 PERDLFSWNVMLTGYVRN--CRLGDARRLFDL------MPEKDVVSWNSLLSGYAQNGYV 158

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDE--------------------------- 370
           +EAR++F+ MPE++ +SWN +L+AYV  G I+E                           
Sbjct: 159 DEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKK 218

Query: 371 ----AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
               A+ LF+ M  R+ +SW  MISG AQ G   +  +LF +          + +   ++
Sbjct: 219 KLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDV----FTWTAMVS 274

Query: 427 SCAGLGALENGRQLHAQLVH----------SGYDSS-----------------LSAGNAL 459
                G L+  +    ++            +GY  +                 +S+ N +
Sbjct: 275 GYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTM 334

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           IT Y + G +  A   F+ MP  D VSW A+IA   Q G+   A+ ++ ++ ++G   +R
Sbjct: 335 ITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNR 394

Query: 520 ITFLTVLSACNHAGLVKEGRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
            TF   LS C     ++ G++    +HG     G   G       + +  + G   EA D
Sbjct: 395 ATFGCALSTCADIAALELGKQ----IHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEAND 450

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHG 601
             + +  K     W  +LAG   HG
Sbjct: 451 TFEGIEEKDVVS-WNTMLAGYARHG 474



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 139/331 (41%), Gaps = 53/331 (16%)

Query: 346 QMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKL 405
           ++ + D++ WN  +S ++  G  D A  +F  M  R+ +S+  MISG  +N        L
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNL 102

Query: 406 FSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465
           F QM        +    G + +C     L + R+L   +     +  + + N+L++ YA+
Sbjct: 103 FDQMPERDLFSWNVMLTGYVRNC----RLGDARRLFDLMP----EKDVVSWNSLLSGYAQ 154

Query: 466 CGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ---------------- 509
            G V+ A  VF+ MP  +S+SWN ++AA   +G    A  L+E                 
Sbjct: 155 NGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGF 214

Query: 510 -----------MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED-- 556
                      +  +  + D I++ T++S     G + + RR F+         P  D  
Sbjct: 215 VRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDE-------SPTRDVF 267

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
            +   +    + G   EAK   D +P K     + A++AG      +D+    A +LF+ 
Sbjct: 268 TWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVS-YNAMIAGYVQTKKMDI----ARELFES 322

Query: 617 MP-HHAGTYVLLSNMYANLGRWDDAARVRKL 646
           MP  +  ++  +   Y  +G   D A+ RK 
Sbjct: 323 MPCRNISSWNTMITGYGQIG---DIAQARKF 350



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 57/155 (36%), Gaps = 45/155 (29%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L + +H   +  G+     + N L+ +Y K   +  A   F+ I + D+V+  T++A Y 
Sbjct: 412 LGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGY- 470

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                  AR  F                         G  A+ +F  M+   VKPD  T 
Sbjct: 471 -------ARHGF-------------------------GRQALTVFESMKTAGVKPDEITM 498

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSV 187
             VLSA +            H  ++  GT  F S+
Sbjct: 499 VGVLSACS------------HTGLLDRGTEYFYSM 521


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  569 bits (1467), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 301/749 (40%), Positives = 436/749 (58%), Gaps = 64/749 (8%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           +P+++     I A+  +  V  A  +F   P   R T  YNAM+  YS N     A  LF
Sbjct: 35  EPEVIRSNKAITAHMRAGRVADAERLFAAMP--RRSTSTYNAMLAGYSANGRLPLAASLF 92

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           R + R    PDN+++ ++L ALA+             + +    GLF  +       Y  
Sbjct: 93  RAIPR----PDNYSYNTLLHALAV------------SSSLADARGLFDEMPVRDSVTYNV 136

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
            +SS   ++  L+  AR  FD  PE+D +SW  M+  YV+N  ++ AR   +  +E   +
Sbjct: 137 MISSH--ANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVI 194

Query: 258 AWNALISGYVH-------REL-----------------------KMLMLRIQLDE----- 282
           +WNAL+SGYV        REL                        M+  R   D      
Sbjct: 195 SWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRD 254

Query: 283 -FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEAR 341
            FT+T+V+S  A +G+    ++V   +        PE +    NA+V  Y +   ++EA+
Sbjct: 255 VFTWTAVVSGYAQNGMLEEARRVFDAM--------PERNAVSWNAMVAAYIQRRMMDEAK 306

Query: 342 DIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEE 401
           ++FN MP R++ SWN +L+ Y  AG+++EAK++F+ M +++ +SW  M++  +Q G  EE
Sbjct: 307 ELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEE 366

Query: 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALIT 461
            L+LF +M   G      AFA  +++CA + ALE G QLH +L+ +GY      GNAL+ 
Sbjct: 367 TLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLA 426

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           MY +CG +E A   F  M   D VSWN MIA   +HG G  A+E+++ M      PD IT
Sbjct: 427 MYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDIT 486

Query: 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581
            + VL+AC+H+GLV++G  YF +MH  +G+    +HY   IDLL RAG+ +EA D++  +
Sbjct: 487 LVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDM 546

Query: 582 PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAA 641
           PF+P + +W ALL   RIH N +LG  AAE++F+L P +AG YVLLSN+YA+ G+W DA 
Sbjct: 547 PFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDAR 606

Query: 642 RVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVP 701
           ++R +M +RGVKK PG SWIEV NKVH F   D  HPE + +Y +LE L + M+K GYV 
Sbjct: 607 KMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVS 666

Query: 702 DTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMS 761
            T  VLHD+E ++KE+ L  HSEKLAVA+G++ +P G  +RV+KNLR+CGDCHNAFK++S
Sbjct: 667 ATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYIS 726

Query: 762 KVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            + GR I++RD  RFHHFR G CSCGDYW
Sbjct: 727 AIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score = 47.8 bits (112), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 5/120 (4%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           +H  +I +G+     + N L+ +Y K   +  AR  F+E+ + D+V+  T+IA Y+    
Sbjct: 405 LHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGF 464

Query: 97  VKLAREMFN--KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD---DVKPDNFT 151
            K A E+F+  +T     D +    ++ A SH+      I  F  M  D     KP+++T
Sbjct: 465 GKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYT 524


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 299/746 (40%), Positives = 437/746 (58%), Gaps = 58/746 (7%)

Query: 48  PREHII--NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFN 105
           PR   +  N +I  Y ++ K   AR LFD++P+ D+ +   ++  Y  +  +  AR +F+
Sbjct: 76  PRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFD 135

Query: 106 KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEE 165
             P K  D V +N++++ Y+ N     A E+F +M     + ++ ++  +L+A       
Sbjct: 136 LMPEK--DVVSWNSLLSGYAQNGYVDEAREVFDNM----PEKNSISWNGLLAAYVHNGRI 189

Query: 166 EKQCMQMHCTVVKSGTGLFTSVLN-ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERD 224
           E+ C+            LF S  +  LIS    C+   FV  + L G AR +FD+MP RD
Sbjct: 190 EEACL------------LFESKSDWDLISW--NCLMGGFVRKKKL-GDARWLFDKMPVRD 234

Query: 225 ELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFT 284
            +SW TM++GY +   L  AR   D         W A++SGYV   +        LDE  
Sbjct: 235 AISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGM--------LDE-- 284

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
                                    +T     PE +    NA++  Y +  K++ AR++F
Sbjct: 285 ------------------------AKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELF 320

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
             MP R++ SWN +++ Y   G I +A+  F+ M +R+ +SW  +I+G AQ+G+ EE L 
Sbjct: 321 ESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALN 380

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           +F +++ +G       F  A+++CA + ALE G+Q+H Q V  GY +    GNAL+ MY 
Sbjct: 381 MFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYF 440

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           +CG ++ AN  F  +   D VSWN M+A   +HG G +A+ ++E M   G+ PD IT + 
Sbjct: 441 KCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVG 500

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584
           VLSAC+H GL+  G  YF +M   YG+ P   HY   IDLL RAG+  EA+D+I ++PF+
Sbjct: 501 VLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQ 560

Query: 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVR 644
           P A  W ALL   RIHGN +LG +AAE +F++ P ++G YVLLSN+YA  GRW DA ++R
Sbjct: 561 PGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMR 620

Query: 645 KLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTK 704
             MRD GV+K PG SW+EV NK+H F V D +HPE + +Y YLE+L L+MR+ GYV  TK
Sbjct: 621 SKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTK 680

Query: 705 FVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVV 764
            VLHD+E ++KE+ L  HSEKLAVAFG++ +PGG  +RV+KNLR+C DCH+A K +SK+V
Sbjct: 681 LVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIV 740

Query: 765 GREIVVRDGKRFHHFRDGKCSCGDYW 790
           GR I++RD  RFHHF +G CSCGDYW
Sbjct: 741 GRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 110/445 (24%), Positives = 190/445 (42%), Gaps = 85/445 (19%)

Query: 224 DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDE- 282
           D L W   ++ +++N + D+A    + M     V++NA+ISGY+ R  K  + R   D+ 
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYL-RNSKFNLARNLFDQM 106

Query: 283 -----FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
                F++  +++    +   RLG     + L       PE  +   N+L++ Y + G V
Sbjct: 107 PERDLFSWNVMLTGYVRN--CRLGDARRLFDL------MPEKDVVSWNSLLSGYAQNGYV 158

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDE--------------------------- 370
           +EAR++F+ MPE++ +SWN +L+AYV  G I+E                           
Sbjct: 159 DEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKK 218

Query: 371 ----AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
               A+ LF+ M  R+ +SW  MISG AQ G   +  +LF +          + +   ++
Sbjct: 219 KLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDV----FTWTAMVS 274

Query: 427 SCAGLGALENGRQLHAQLVH----------SGYDSS-----------------LSAGNAL 459
                G L+  +    ++            +GY  +                 +S+ N +
Sbjct: 275 GYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTM 334

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           IT Y + G +  A   F+ MP  D VSW A+IA   Q G+   A+ ++ ++ ++G   +R
Sbjct: 335 ITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNR 394

Query: 520 ITFLTVLSACNHAGLVKEGRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
            TF   LS C     ++ G++    +HG     G   G       + +  + G   EA D
Sbjct: 395 ATFGCALSTCADIAALELGKQ----IHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEAND 450

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHG 601
             + +  K     W  +LAG   HG
Sbjct: 451 TFEGIEEKDVVS-WNTMLAGYARHG 474



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 139/331 (41%), Gaps = 53/331 (16%)

Query: 346 QMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKL 405
           ++ + D++ WN  +S ++  G  D A  +F  M  R+ +S+  MISG  +N        L
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNL 102

Query: 406 FSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465
           F QM        +    G + +C     L + R+L   +     +  + + N+L++ YA+
Sbjct: 103 FDQMPERDLFSWNVMLTGYVRNC----RLGDARRLFDLMP----EKDVVSWNSLLSGYAQ 154

Query: 466 CGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ---------------- 509
            G V+ A  VF+ MP  +S+SWN ++AA   +G    A  L+E                 
Sbjct: 155 NGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGF 214

Query: 510 -----------MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED-- 556
                      +  +  + D I++ T++S     G + + RR F+         P  D  
Sbjct: 215 VRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDE-------SPTRDVF 267

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
            +   +    + G   EAK   D +P K     + A++AG      +D+    A +LF+ 
Sbjct: 268 TWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVS-YNAMIAGYVQTKKMDI----ARELFES 322

Query: 617 MP-HHAGTYVLLSNMYANLGRWDDAARVRKL 646
           MP  +  ++  +   Y  +G   D A+ RK 
Sbjct: 323 MPCRNISSWNTMITGYGQIG---DIAQARKF 350



 Score = 42.0 bits (97), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 57/155 (36%), Gaps = 45/155 (29%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L + +H   +  G+     + N L+ +Y K   +  A   F+ I + D+V+  T++A Y 
Sbjct: 412 LGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGY- 470

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                  AR  F                         G  A+ +F  M+   VKPD  T 
Sbjct: 471 -------ARHGF-------------------------GRQALTVFESMKTAGVKPDEITM 498

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSV 187
             VLSA +            H  ++  GT  F S+
Sbjct: 499 VGVLSACS------------HTGLLDRGTEYFYSM 521


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 296/713 (41%), Positives = 422/713 (59%), Gaps = 29/713 (4%)

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
           ++ S  +  AR +F + P   RD V +  M+   +       AI+   DM  D   P  F
Sbjct: 2   FAKSGRLADARGVFAEMP--ERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQF 59

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           T T+VLS+ A + +      ++H  VVK G G    V N+++++Y KC  S         
Sbjct: 60  TLTNVLSSCA-VTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSE-------- 110

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
             A  VF+ MP R   SW  M++       +D A    + M +   V+WNA+I+GY    
Sbjct: 111 -TATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNG 169

Query: 271 LKMLMLRI----------QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
           L    L++            DEFT TSV+SACAN G  R+GKQVHAY+LRTE      ++
Sbjct: 170 LDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMA----YN 225

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDL--VSWNAILSAYVSAGLIDEAKSLFEAM 378
             V NAL++ Y K G V  AR I +Q  E DL  +S+ A+L  YV  G ++ A+ +F  M
Sbjct: 226 SQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVM 285

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
             R++++WT MI G  QNG  +E + LF  M   G +P  Y  A  ++ CA L  L+ G+
Sbjct: 286 NNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGK 345

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQH 497
           Q+H + + S  + S S  NA+ITMYAR G    A  +F+ +    ++++W +MI AL QH
Sbjct: 346 QIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQH 405

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
           G G  A+ L+E+ML+ G+ PDRIT++ VLSAC+HAG V EG+RY++ +   + I P   H
Sbjct: 406 GQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSH 465

Query: 558 YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           YA  +DLL RAG FSEA++ I  +P +P A  W +LL+ CR+H N +L   AAE+L  + 
Sbjct: 466 YACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSID 525

Query: 618 PHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAH 677
           P+++G Y  ++N+Y+  GRW DAAR+ K  +++ V+KE G SW  + +K+HVF  DD  H
Sbjct: 526 PNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVH 585

Query: 678 PEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPG 737
           P+  AVY    ++  E++  G+VPD + VLHD++ + KE  LS HSEKLA+AFGL+  P 
Sbjct: 586 PQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPE 645

Query: 738 GATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             T+RV+KNLR+C DCH A K +SKV  REI+VRD  RFHHFRDG CSC DYW
Sbjct: 646 KTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 698



 Score =  155 bits (393), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 127/495 (25%), Positives = 228/495 (46%), Gaps = 62/495 (12%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           ++ R VH+ ++  G      + N ++++Y K      A T+F+ +P   + +   +++  
Sbjct: 75  AVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLN 134

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF-RDMRRDDVKPDNF 150
           +    + LA  +F   P   R  V +NAMI  Y+ N     A++LF R +    + PD F
Sbjct: 135 THLGRMDLAESLFESMP--DRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEF 192

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           T TSVLSA A +    +   Q+H  ++++     + V NALIS Y K  S         +
Sbjct: 193 TITSVLSACANL-GNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGS---------V 242

Query: 211 GAARRVFDEMPERD--ELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY-- 266
             ARR+ D+  E D   +S+T ++ GYVK   +++ARE    M+    VAW A+I GY  
Sbjct: 243 ENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQ 302

Query: 267 -------VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                  +     M+    + + +T  +V+S CA+      GKQ+H   +R+      E 
Sbjct: 303 NGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRS----LLEQ 358

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSAYVSAGLIDEAKSLFEAM 378
           S  V+NA++T+Y + G    AR +F+Q+  R + ++W +++ A    G  +EA  LFE  
Sbjct: 359 SSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFE-- 416

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
                                        +M   G +P    + G +++C+  G +  G+
Sbjct: 417 -----------------------------EMLRAGVEPDRITYVGVLSACSHAGFVNEGK 447

Query: 439 QLHAQLVHSGYDS-SLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQ 496
           + + Q+ +    +  +S    ++ + AR G+   A      MP   D+++W ++++A   
Sbjct: 448 RYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRV 507

Query: 497 HGNGARAIELYEQML 511
           H N   A    E++L
Sbjct: 508 HKNAELAELAAEKLL 522



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 110/243 (45%), Gaps = 63/243 (25%)

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           ++ K G++ +AR +F +MPERD VS                               WTVM
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVS-------------------------------WTVM 29

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           + GL + G   E +K    M  +GF P  +     ++SCA   A   GR++H+ +V  G 
Sbjct: 30  VVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGL 89

Query: 450 DSSLSAGNALITMYARCGVVEAANCV-------------------------------FNT 478
            S +   N+++ MY +CG  E A  V                               F +
Sbjct: 90  GSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFES 149

Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL-PDRITFLTVLSACNHAGLVKE 537
           MP+   VSWNAMIA   Q+G  A+A++L+ +ML E  + PD  T  +VLSAC + G V+ 
Sbjct: 150 MPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRI 209

Query: 538 GRR 540
           G++
Sbjct: 210 GKQ 212



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 70/159 (44%), Gaps = 10/159 (6%)

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           M+A+ G +  A  VF  MP  D+VSW  M+  L + G    AI+    M  +G  P + T
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 522 FLTVLSAC--NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579
              VLS+C    AG V      F    G     P  +     +++  + G    A  V +
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANS---VLNMYGKCGDSETATTVFE 117

Query: 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
            +P + S   W A+++     G +DL    AE LF+ MP
Sbjct: 118 RMPVR-SVSSWNAMVSLNTHLGRMDL----AESLFESMP 151


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  566 bits (1459), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 290/782 (37%), Positives = 460/782 (58%), Gaps = 68/782 (8%)

Query: 23  CDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIV 82
           C+ RN    + A+ +H  +I S   P   + N LI+ Y K   + YAR +FD++PQP+  
Sbjct: 16  CETRN---QTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSF 72

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR 142
           +  T+++AYS S ++   +E+F+  P   RD V +N++I+ Y    +   A++ +  M +
Sbjct: 73  SWNTMLSAYSKSGDLSTMQEIFSIMP--NRDGVSWNSLISGYVCYGSVVEAVKTYNSMMK 130

Query: 143 DDV-KPDNFTFTSVLSALALIVEEEKQCM----QMHCTVVKSGTGLFTSVLNALISVYVK 197
           D V   +  TF+++L     ++   + C+    Q+H  +VK G G +  V ++L+ +Y K
Sbjct: 131 DGVLNLNRITFSTML-----LLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAK 185

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
                      L+  A +VFDE+ ER+ + + TM+TG +++  +  ++    GM E   +
Sbjct: 186 ---------MGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSI 236

Query: 258 AWNALISGYVHRELK---MLMLR------IQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
           +W  +I+G +   L+   M + R      + +D++T+ SV++AC      + GK++H  +
Sbjct: 237 SWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLI 296

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
           +R+        ++ V +ALV +Y KC  V  A  +F +M  +                  
Sbjct: 297 IRSGYN----HNVFVGSALVDMYCKCRSVRYAEAVFKRMANK------------------ 334

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
                        N++SWT M+ G  QNG+ EE +++F  M+  G +P D+     I+SC
Sbjct: 335 -------------NVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSC 381

Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
           A L +LE G Q H Q + SG  S ++  NALIT+Y +CG +E +N +F+ M   D VSW 
Sbjct: 382 ANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWT 441

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP 548
           A+++   Q G     I+L+E+ML +G+ PD +TF+ VLSAC+ AGLV+ G++YFE+M   
Sbjct: 442 ALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKD 501

Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
           +GI P  DHY   IDL  RAG+  EAK+ I+ +PF P +  W  LL+ CR++GN ++G  
Sbjct: 502 HGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKW 561

Query: 609 AAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVH 668
           AAE L +L P +   Y+LLS++YA  G+W + A++R+ MR++G +KEPG SWI+  +KV+
Sbjct: 562 AAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYKSKVY 621

Query: 669 VFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAV 728
           +F  DD + P +  +Y  LE+L  +M + GYVPD   VLHD+E  +K   L+ HSEKLA+
Sbjct: 622 IFSADDQSSPFSDQIYAELEKLNHKMIEEGYVPDASSVLHDVEDSEKMKMLNHHSEKLAI 681

Query: 729 AFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788
           AFGL+ +P G  +RV+KNLR+CGDCHNA K++SK+  REI+VRD  RFH F+DG CSCGD
Sbjct: 682 AFGLLFIPHGLPIRVVKNLRVCGDCHNATKYISKISQREILVRDAVRFHLFKDGTCSCGD 741

Query: 789 YW 790
           +W
Sbjct: 742 FW 743


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  566 bits (1458), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 288/758 (37%), Positives = 435/758 (57%), Gaps = 101/758 (13%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R VHA ++ SG +P  ++ N L+ +Y K   L  AR +FD I   +IV+          
Sbjct: 66  GREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVS---------- 115

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                                  + AMI A+   +    A + +  M+    KPD  TF 
Sbjct: 116 -----------------------WTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFV 152

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           S+L+A     E  +   ++H  +V++G  L   V  +L+ +Y KC           +  A
Sbjct: 153 SLLNAFT-NPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGD---------ISKA 202

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           R +FD +PE++ ++WT ++ GY +   +D A E L+ M +                    
Sbjct: 203 RVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQA------------------- 243

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
               +  ++ T+ S++  C        GK+VH Y++++         L V N+L+T+Y K
Sbjct: 244 ---EVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGR----ELWVVNSLITMYCK 296

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
           CG + EAR +F+ +P RD+V+W A+++ Y   G  DEA +LF  M++             
Sbjct: 297 CGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQ------------- 343

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL 453
                             +G KP    F   +TSC+    L+ G+++H QLVH+GY+  +
Sbjct: 344 ------------------QGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDV 385

Query: 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA-LGQHGNGARAIELYEQMLK 512
              +AL++MYA+CG ++ A+ VFN M   + V+W A+I     QHG    A+E ++QM K
Sbjct: 386 YLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKK 445

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
           +GI PD++TF +VLSAC H GLV+EGR++F +M+  YGI P  +HY+ F+DLL RAG   
Sbjct: 446 QGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLE 505

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632
           EA++VI S+PF P   +W ALL+ CR+H +++ G +AAE + +L P   G YV LS++YA
Sbjct: 506 EAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYA 565

Query: 633 NLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVL 692
             GR++DA +VR++M  R V KEPG SWIEVD KVHVF V+D +HPE++ +Y  L +L  
Sbjct: 566 AAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVELGKLTE 625

Query: 693 EMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGD 752
           +++++GYVPDT+FVLHD++ +QKE  L +HSE+LA+ +GLMK P G  +R++KNLR+CGD
Sbjct: 626 QIKEMGYVPDTRFVLHDVDEEQKERILFSHSERLAITYGLMKTPPGMPIRIVKNLRVCGD 685

Query: 753 CHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           CH A KF+SKVVGREI+ RD +RFHHF DG CSCGD+W
Sbjct: 686 CHTATKFISKVVGREIIARDAQRFHHFADGVCSCGDFW 723



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 121/488 (24%), Positives = 213/488 (43%), Gaps = 101/488 (20%)

Query: 27  NPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTT 86
           NP    L + VH  ++ +G +    +   L+ +Y K   +  AR +FD +P+ ++V  T 
Sbjct: 160 NPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTL 219

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           LIA Y+    V +                                 A+EL   M++ +V 
Sbjct: 220 LIAGYAQQGQVDV---------------------------------ALELLETMQQAEVA 246

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           P+  TF S+L         E    ++H  +++SG G    V+N+LI++Y KC        
Sbjct: 247 PNKITFASILQGCTTPAALE-HGKKVHRYIIQSGYGRELWVVNSLITMYCKCGG------ 299

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              +  AR++F ++P RD ++WT M+TGY +  + D A      M +             
Sbjct: 300 ---LEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQ------------ 344

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                      I+ D+ T+TSV+++C++    + GK++H  L+           + + +A
Sbjct: 345 ----------GIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYN----LDVYLQSA 390

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           LV++Y KCG +++A  +FNQM ER++V+W AI++                          
Sbjct: 391 LVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCC----------------------- 427

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ-LHAQLV 445
                  AQ+G   E L+ F QM+ +G KP    F   +++C  +G +E GR+   +  +
Sbjct: 428 -------AQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYL 480

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGNGARAI 504
             G    +   +  + +  R G +E A  V  +MP +   S W A+++A   H +  R  
Sbjct: 481 DYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGE 540

Query: 505 ELYEQMLK 512
              E +LK
Sbjct: 541 RAAENVLK 548



 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 155/351 (44%), Gaps = 78/351 (22%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           +AS LQ C    P      + VH ++I SG+     ++N LI +YCK   L  AR LF +
Sbjct: 252 FASILQGCT--TPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSD 309

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P  D+V                                  + AM+T Y+       AI 
Sbjct: 310 LPHRDVVT---------------------------------WTAMVTGYAQLGFHDEAIN 336

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALA--LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
           LFR M++  +KPD  TFTSVL++ +    ++E K   ++H  +V +G  L   + +AL+S
Sbjct: 337 LFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGK---RIHQQLVHAGYNLDVYLQSALVS 393

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTG-YVKNDYLDAAREFLDGMS 252
           +Y KC S         M  A  VF++M ER+ ++WT ++TG   ++     A E+ D M 
Sbjct: 394 MYAKCGS---------MDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMK 444

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG-KQVHAYLLRT 311
           +                        I+ D+ T+TSV+SAC + GL   G K   +  L  
Sbjct: 445 KQ----------------------GIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDY 482

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSA 361
             KP  E      +  V L  + G + EA ++   MP     S W A+LSA
Sbjct: 483 GIKPMVEHY----SCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSA 529



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 119/227 (52%), Gaps = 4/227 (1%)

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           +S L + G  +E L + + M L+G +     F G +  CA L +LE GR++HA ++ SG 
Sbjct: 19  VSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 78

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
             +    N L++MYA+CG +  A  VF+++ + + VSW AMI A         A + YE 
Sbjct: 79  QPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYET 138

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRR-YFETMHGPYGIPPGEDHYARFIDLLCRA 568
           M   G  PD++TF+++L+A  +  L++ G++ + E +     + P        + +  + 
Sbjct: 139 MKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVG--TSLVGMYAKC 196

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
           G  S+A+ + D LP K +   W  L+AG    G +D+ ++  E + Q
Sbjct: 197 GDISKARVIFDRLPEK-NVVTWTLLIAGYAQQGQVDVALELLETMQQ 242


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 294/750 (39%), Positives = 432/750 (57%), Gaps = 64/750 (8%)

Query: 77  PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
           P  +++ R   I A+  +  V  A  +F   P   R T  YN M+  Y+ N     A+  
Sbjct: 103 PDMEVIRRNRAITAHMRAGRVPDAERLFAAMP--RRSTSTYNTMLAGYAANGRLPQALSF 160

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           FR + R    PD+F++ ++L AL +             + +     LF  +       Y 
Sbjct: 161 FRSIPR----PDSFSYNTLLHALGV------------SSSLADVRALFDEMPVKDSVSYN 204

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
             +SS   ++  L+  AR  FD  PE+D +SW  M+  YV+N  +  ARE  D  +E   
Sbjct: 205 VMISSH--ANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDA 262

Query: 257 VAWNALISGYVHREL-----KMLMLRIQLDE----------------------------- 282
           ++WNAL++GYV R       KM     Q D                              
Sbjct: 263 ISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIR 322

Query: 283 --FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
             FT+T+++S  A +G+    K+V   +        P+ +    NA++  Y +   + EA
Sbjct: 323 DVFTWTAIVSGYAQNGMLEEAKRVFDAM--------PDKNAVSWNAMMAAYVQRRMMEEA 374

Query: 341 RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGE 400
           +++F+ MP R++ SWN +L+ Y  AG++DEA+++F  M +++ +SW  M++  +Q G+ E
Sbjct: 375 KELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSE 434

Query: 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALI 460
           E L+LF +M   G      AFA  +++CA + ALE G QLH++L+ +GY      GNAL+
Sbjct: 435 ETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALL 494

Query: 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI 520
            MY +CG +E A+  F  M   D VSWN MIA   +HG G  A+E+++ M K    PD I
Sbjct: 495 AMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDI 554

Query: 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580
           T + VL+AC+H+GLV++G  YF +MH  +G+    +HY   IDLL RAG+  EA +++  
Sbjct: 555 TLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKD 614

Query: 581 LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA 640
           +PF+P + +W ALL   RIH N +LG  AAE++F+L P +AG YVLLSN+YA+ G+W D 
Sbjct: 615 MPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDV 674

Query: 641 ARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYV 700
            ++R +M +RGVKK PG SWIEV NKVH F V D+ HPE + +Y +LE L + M+K GYV
Sbjct: 675 DKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYAFLEDLDIRMKKAGYV 734

Query: 701 PDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFM 760
             T  VLHD+E ++KE+ L  HSEKLAVA+G++K+P G  +RV+KNLR+C DCH AFK +
Sbjct: 735 SATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILKIPPGRPIRVIKNLRVCRDCHTAFKCI 794

Query: 761 SKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           S + GR I++RD  RFHHFRDG CSCGDYW
Sbjct: 795 SAIEGRLIILRDSNRFHHFRDGSCSCGDYW 824



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/457 (24%), Positives = 190/457 (41%), Gaps = 97/457 (21%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
           N L+  Y +  ++  A+ +F+++PQ D+V+  T+++ Y+   ++  AR +F+  P+  RD
Sbjct: 266 NALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPI--RD 323

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMH 173
              + A+++ Y+ N     A  +F      D  PD    +                    
Sbjct: 324 VFTWTAIVSGYAQNGMLEEAKRVF------DAMPDKNAVS-------------------- 357

Query: 174 CTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMT 233
                          NA+++ YV+         R +M  A+ +FD MP R+  SW TM+T
Sbjct: 358 --------------WNAMMAAYVQ---------RRMMEEAKELFDAMPCRNVASWNTMLT 394

Query: 234 GYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRI---------QLDEFT 284
           GY +   LD AR     M +   V+W A+++ Y         L++          ++   
Sbjct: 395 GYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSA 454

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           +  V+S CA+      G Q+H+ L+    K        V NAL+ +Y+KCG + EA   F
Sbjct: 455 FACVLSTCADIAALECGMQLHSRLI----KAGYGVGCFVGNALLAMYFKCGSMEEAHSAF 510

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
            +M ERD+VSWN +++ Y   G                                G+E L+
Sbjct: 511 EEMEERDVVSWNTMIAGYARHGF-------------------------------GKEALE 539

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENG-RQLHAQLVHSGYDSSLSAGNALITMY 463
           +F  MR    KP D    G + +C+  G +E G    ++     G  +       +I + 
Sbjct: 540 VFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLL 599

Query: 464 ARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
            R G ++ A  +   MP   DS  W A++ A   H N
Sbjct: 600 GRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRN 636



 Score = 47.8 bits (112), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 7/121 (5%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           +H+ +I +G+     + N L+ +Y K   +  A + F+E+ + D+V+  T+IA Y+    
Sbjct: 474 LHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGF 533

Query: 97  VKLAREMFN---KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD---DVKPDNF 150
            K A E+F+   KT  K  D      ++ A SH+      I  F  M RD     KP+++
Sbjct: 534 GKEALEVFDTMRKTSTKPDDITLV-GVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHY 592

Query: 151 T 151
           T
Sbjct: 593 T 593


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 289/761 (37%), Positives = 433/761 (56%), Gaps = 73/761 (9%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP----QPDIVARTTLIA 89
           A  ++  M  +G  P + +   +I        L   R + ++I     + D++  T L +
Sbjct: 104 ALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALAS 163

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
            Y+   +++ AR++F++ P   RD V +NA+I  YS N   + A+ LF +M+ + +KP++
Sbjct: 164 MYTKCGSLENARQVFDRMP--KRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNS 221

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
            T  SV+   A ++  E Q  Q+HC  ++SG      V+N L+++Y KC +         
Sbjct: 222 STLVSVMPVCAHLLALE-QGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGN--------- 271

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +  A ++F+ MP RD  SW  ++ GY  N     A  F +                    
Sbjct: 272 VNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFN-------------------- 311

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
             +M +  I+ +  T  SV+ ACA+      G+Q+H Y +R+      E +  V NALV 
Sbjct: 312 --RMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGF----ESNDVVGNALVN 365

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           +Y KC                               G ++ A  LFE M ++N+++W  +
Sbjct: 366 MYAKC-------------------------------GNVNSAYKLFERMPKKNVVAWNAI 394

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           ISG +Q+G+  E L LF +M+ +G KP  +A    + +CA   ALE G+Q+H   + SG+
Sbjct: 395 ISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGF 454

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
           +S++  G  L+ +YA+CG V  A  +F  MP  D VSW  MI A G HG+G  A+ L+ +
Sbjct: 455 ESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSK 514

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
           M + G   D I F  +L+AC+HAGLV +G +YF+ M   YG+ P  +HYA  +DLL RAG
Sbjct: 515 MQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAG 574

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629
              EA  +I ++  +P A +W ALL  CRIH NI+LG QAA+ LF+L P +AG YVLLSN
Sbjct: 575 HLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSN 634

Query: 630 MYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQ 689
           +YA   RW+D A++RK+M+++GVKK+PGCS + V   V  FLV D  HP+++ +Y  LE 
Sbjct: 635 IYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEI 694

Query: 690 LVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRI 749
           L  +MRK GYVP+T   L D+E + KE  LS+HSEKLA++FG++    G  +R++KNLR+
Sbjct: 695 LYEQMRKAGYVPNTNLALQDVEEEAKENILSSHSEKLAISFGIINTSPGIPIRIMKNLRV 754

Query: 750 CGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           C DCHNA KF+SK+VGREI+VRD  RFHH ++G CSCGDYW
Sbjct: 755 CSDCHNATKFISKIVGREIIVRDANRFHHVKNGFCSCGDYW 795



 Score =  222 bits (565), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 153/530 (28%), Positives = 241/530 (45%), Gaps = 86/530 (16%)

Query: 85  TTLIAAYSASDNVKLAREM--------FNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
           T+ + A    + VK  RE+        F +T ++  + V +   I  Y  N   + A+ L
Sbjct: 49  TSTVVAQLRRNKVKTTREVSACANQTQFTQTDIR-NNAVVWKETIIGYVKNGFWNKALRL 107

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           +  M+R  + PD   F SV+ A      + +   ++H  ++  G      V  AL S+Y 
Sbjct: 108 YYQMQRTGINPDKLVFLSVIKACGS-QSDLQAGRKVHEDIIARGFESDVIVGTALASMYT 166

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           KC S         +  AR+VFD MP+RD +SW  ++ GY +N     A      M  N  
Sbjct: 167 KCGS---------LENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVN-- 215

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
                                I+ +  T  SV+  CA+      GKQ+H Y +R+     
Sbjct: 216 --------------------GIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGI--- 252

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
            E  + V N LV +Y KCG VN A  +F +MP RD+ SWNAI                  
Sbjct: 253 -ESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAI------------------ 293

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
                        I G + N    E L  F++M++ G KP        + +CA L ALE 
Sbjct: 294 -------------IGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQ 340

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           G+Q+H   + SG++S+   GNAL+ MYA+CG V +A  +F  MP  + V+WNA+I+   Q
Sbjct: 341 GQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQ 400

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
           HG+   A+ L+ +M  +GI PD    ++VL AC H   +++G++    +HG Y I  G +
Sbjct: 401 HGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQ----IHG-YTIRSGFE 455

Query: 557 HY----ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
                    +D+  + G  + A+ + + +P +     W  ++    IHG+
Sbjct: 456 SNVVVGTGLVDIYAKCGNVNTAQKLFERMP-EQDVVSWTTMILAYGIHGH 504


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 300/792 (37%), Positives = 461/792 (58%), Gaps = 67/792 (8%)

Query: 13  ANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTL 72
           +N YAS L+LC      T   A+ +H  ++ +  +P   + N LI  Y K   L YA  +
Sbjct: 5   SNYYASLLKLCCESQNQTQ--AKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHV 62

Query: 73  FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
           FD IPQP++ +  T+++ YS    +   +++FN  P   RD V +N  I+ Y++  +   
Sbjct: 63  FDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPF--RDGVSWNLAISGYANYGSCSD 120

Query: 133 AIELFRDMRRDDVKPDN-FTFTSVLSALALIVEEEKQCM----QMHCTVVKSGTGLFTSV 187
           A+ +++ M +D     N  TF+++L     I+  + +C+    Q++  ++K G G    V
Sbjct: 121 AVRVYKLMLKDAAMNLNRITFSTML-----ILCSKFRCVDLGRQINGQILKFGFGSDVFV 175

Query: 188 LNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREF 247
            + L+ +Y K           L+  A+R FDEMPER+ +   TM+TG ++   ++ ++  
Sbjct: 176 GSPLVDMYTKL---------GLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRL 226

Query: 248 LDGMSENVGVAWNALISGYVHRELK---------MLMLRIQLDEFTYTSVISACANSGLF 298
             G+ E   ++W  +I+G +   L+         M +    +D+FT+ SV++AC +    
Sbjct: 227 FCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLAL 286

Query: 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAI 358
             GKQ+HAY++RT+ K     ++ V +ALV +Y KC                        
Sbjct: 287 GEGKQIHAYVIRTDHKD----NVFVGSALVDMYSKCRS---------------------- 320

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
                    I  A+++F+ M ++N++SWT M+ G  QNG+ EE +K+F +M+  G +P D
Sbjct: 321 ---------IKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDD 371

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478
           +     I+SCA L +LE G Q H + + SG  S ++  NALIT+Y +CG  E ++ +F  
Sbjct: 372 FTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTE 431

Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG 538
           M   D VSW A++A   Q G     I L+E+ML  G+ PD +TF+ VLSAC+ AGLV++G
Sbjct: 432 MNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKG 491

Query: 539 RRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCR 598
            +YFE+M   +GI P  DH    IDLL RAG+  EA++ I+++P  P    W  LL+ CR
Sbjct: 492 LQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCR 551

Query: 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGC 658
           +HG++++G  AA+ L  L P +  +YVLLS++YA+ G+WD  A++R+ MRD+ V+KEPG 
Sbjct: 552 VHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGY 611

Query: 659 SWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYA 718
           SWI+   KVHVF  DD + P    +Y  LE+L  +M + GYVPD   VLHD+E  +K   
Sbjct: 612 SWIKYKGKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVLHDVEESEKIKM 671

Query: 719 LSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHH 778
           L+ HSEKLA+AFGL+ +P G  +RV+KNLR+CGDCHNA KF+SK+  REI+VRD  RFH 
Sbjct: 672 LNHHSEKLAIAFGLIFVPPGLPIRVIKNLRVCGDCHNATKFISKITQREILVRDAVRFHL 731

Query: 779 FRDGKCSCGDYW 790
           F+DG CSCGD+W
Sbjct: 732 FKDGTCSCGDFW 743


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  557 bits (1435), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 304/777 (39%), Positives = 448/777 (57%), Gaps = 39/777 (5%)

Query: 23  CDPRNPITSSLARSVHAHMISS-GFK-PREHIINRLIDIYCKSLKLVYARTLFDEIPQPD 80
           C   N    S  RS +++  SS  FK P     N+ I  + ++     A  +F+ +P+  
Sbjct: 17  CLCTNNYYRSKRRSTNSYSPSSVKFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRS 76

Query: 81  IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
            V+   +I+ Y  +    LAR++F+K P   RD   +N M+T Y  N     A +LF  M
Sbjct: 77  SVSYNAMISGYLRNAKFSLARDLFDKMP--ERDLFSWNVMLTGYVRNRRLGEAHKLFDLM 134

Query: 141 RRDDVKPDNFTFTSVLSALAL--IVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
            + DV     ++ ++LS  A    V+E ++       V        +   N L++ YV  
Sbjct: 135 PKKDV----VSWNAMLSGYAQNGFVDEARE-------VFNKMPHRNSISWNGLLAAYVH- 182

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
                      +  ARR+F+     + +SW  +M GYVK + L  AR+  D M     ++
Sbjct: 183 --------NGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVIS 234

Query: 259 WNALISGYVH----RELKMLMLRIQL-DEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
           WN +ISGY       + K L     + D FT+T+++S    +G+     +   Y      
Sbjct: 235 WNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMV---DEARKYFDEMPV 291

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
           K    +     NA++  Y +  K+  A ++F  MP R++ SWN +++ Y   G I +A+ 
Sbjct: 292 KNEISY-----NAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARK 346

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
           LF+ M +R+ +SW  +ISG AQNG+ EE L +F +M+ +G       F+ A+++CA + A
Sbjct: 347 LFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAA 406

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
           LE G+Q+H Q+V +G+++    GNAL+ MY +CG  + AN VF  +   D VSWN MIA 
Sbjct: 407 LELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAG 466

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
             +HG G +A+ L+E M K G+ PD IT + VLSAC+H+GL+  G  YF +M   Y + P
Sbjct: 467 YARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKP 526

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
              HY   IDLL RAG+  EA++++ ++PF P A  W ALL   RIHGN +LG +AAE +
Sbjct: 527 TSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMV 586

Query: 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVD 673
           F++ P ++G YVLLSN+YA  GRW D  ++R  MR+ GV+K  G SW+EV NK+H F V 
Sbjct: 587 FKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHTFSVG 646

Query: 674 DTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLM 733
           D  HPE   +Y +LE+L L+MR+ GYV  TK VLHD+E ++KE+ L  HSEKLAVAFG++
Sbjct: 647 DCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGIL 706

Query: 734 KLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            +P G  +RV+KNLR+C DCHNA K +SK+VGR I++RD  RFHHF +G CSCGDYW
Sbjct: 707 TIPAGRPIRVMKNLRVCQDCHNAIKHISKIVGRLIILRDSHRFHHFSEGICSCGDYW 763


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  556 bits (1434), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 287/719 (39%), Positives = 422/719 (58%), Gaps = 65/719 (9%)

Query: 77  PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
           P+ D + R  L        N++ AR +F++ P   RD V +NAM++ Y+ N     A E+
Sbjct: 27  PEFDFLERHDLRGCVRYR-NLRAARLLFDQMP--ERDVVSWNAMLSGYAQNGYVKEAKEI 83

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           F +M      P   + +                                   N +++ YV
Sbjct: 84  FDEM------PCKNSIS----------------------------------WNGMLAAYV 103

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           +            +  ARR+F+   + + +SW  MM GYVK + L  AR   D M E   
Sbjct: 104 Q---------NGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDE 154

Query: 257 VAWNALISGYVHRELKMLMLRI-----QLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
           V+WN +ISGY      +   R+       D FT+T+++S    +G+    ++V   +   
Sbjct: 155 VSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGM--- 211

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
                PE +    NA++  Y +C ++++AR++F  MP +++ SWN +++ Y   G I +A
Sbjct: 212 -----PEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQA 266

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
           ++ F+ M +R+ +SW  +I+G AQ+GYGEE L LF +M+ +G +     F   +++CA +
Sbjct: 267 RNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEI 326

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
            ALE G+Q+H ++V +G +S    GNAL+ MY +CG ++ A  VF  +   + VSWN MI
Sbjct: 327 AALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMI 386

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
           A   +HG G  A+ L+E M K GILPD +T + VLSAC+H GLV +G  YF +M   YGI
Sbjct: 387 AGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGI 446

Query: 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611
                HY   IDLL RAG+  +A++++ ++PF+P A  W ALL   RIHGN +LG +AA+
Sbjct: 447 TANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAK 506

Query: 612 QLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFL 671
            +F++ P ++G YVLLSN+YA  GRW D  R+R  MRDRGVKK PG SW+EV NK+H F 
Sbjct: 507 MIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFT 566

Query: 672 VDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFG 731
           V D+ HPE   +Y +LE+L L+M+K GYV  TK VLHD+E ++K + L  HSEKLAVAFG
Sbjct: 567 VGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLAVAFG 626

Query: 732 LMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           ++ +P G  +RV+KNLR+C DCHNA K +SK+VGR I++RD  RFHHF  G+CSCGDYW
Sbjct: 627 ILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGDYW 685



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 133/518 (25%), Positives = 225/518 (43%), Gaps = 103/518 (19%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTP----- 108
           N ++  Y ++  +  A+ +FDE+P  + ++   ++AAY  +  ++ AR +F         
Sbjct: 65  NAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELI 124

Query: 109 ------------------------LKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
                                   +  RD V +N MI+ Y+ N     A  LF +    D
Sbjct: 125 SWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRD 184

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSV-LNALISVYVKCVSSPF 203
           V    FT+T+++S         +  M      V  G     SV  NA+I+ YV+C     
Sbjct: 185 V----FTWTAMVSGYV------QNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQC----- 229

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
                 M  AR +F+ MP ++  SW TM+TGY +N  +  AR F D M +   ++W A+I
Sbjct: 230 ----KRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAII 285

Query: 264 SGY---------VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
           +GY         +H  ++M     +L+  T+TS +S CA      LGKQVH  ++    K
Sbjct: 286 AGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVV----K 341

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
              E    V NAL+ +Y KCG +++A  +F  + E+++VSWN +++ Y   G   EA  L
Sbjct: 342 AGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALML 401

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
           FE+M++  +L                               P D    G +++C+  G +
Sbjct: 402 FESMKKTGIL-------------------------------PDDVTMVGVLSACSHTGLV 430

Query: 435 ENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIA 492
           + G +    +    G  ++      +I +  R G ++ A  +   MP   D+ +W A++ 
Sbjct: 431 DKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLG 490

Query: 493 ALGQHGN---GARAIELYEQMLKEGILPDRITFLTVLS 527
           A   HGN   G +A ++  +M      PD      +LS
Sbjct: 491 ASRIHGNTELGEKAAKMIFEM-----EPDNSGMYVLLS 523



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 81/207 (39%), Gaps = 55/207 (26%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L + VH  ++ +G +   ++ N L+ +YCK   +  A  +F+ I + ++V+  T+IA Y 
Sbjct: 331 LGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGY- 389

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                  AR  F                         G  A+ LF  M++  + PD+ T 
Sbjct: 390 -------ARHGF-------------------------GKEALMLFESMKKTGILPDDVTM 417

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
             VLSA +            H  +V  GT  F S+        +   S  +     L+G 
Sbjct: 418 VGVLSACS------------HTGLVDKGTEYFYSMTQ---DYGITANSKHYTCMIDLLGR 462

Query: 213 ARRVFD------EMP-ERDELSWTTMM 232
           A R+ D       MP E D  +W  ++
Sbjct: 463 AGRLDDAQNLMKNMPFEPDAATWGALL 489


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 295/804 (36%), Positives = 453/804 (56%), Gaps = 89/804 (11%)

Query: 65  KLVYARTLFDEIP-QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITA 123
           K+V+ +   DE+  + DI    +LI  YS  ++V  A ++F +  + +RD V +++MI A
Sbjct: 76  KMVHKQ--LDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRR--MTLRDVVTWSSMIAA 131

Query: 124 YSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA--LIVEEEKQCMQMHCTVVKSGT 181
           Y+ N++   A + F  M   +++P+  TF S+L A     I+E+ ++   +H  V   G 
Sbjct: 132 YAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRK---IHTIVKAMGM 188

Query: 182 GLFTSVLNALISVY-------VKC------------------------------------ 198
               +V  ALI++Y       V C                                    
Sbjct: 189 ETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQ 248

Query: 199 -----VSSPFVSSRSLMGA---------ARRVFDEMPER----DELSWTTMMTGYVKNDY 240
                +S   V+  SL+ +          RR+   + ER    D +    ++T Y K + 
Sbjct: 249 MLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNS 308

Query: 241 LDAAREFLDGMSENVGVAWNALISGYVHR---------ELKMLMLRIQLD-----EFTYT 286
           +  ARE  D MS+   ++W+A+I+GY            E+  L+ R++ +     + T+ 
Sbjct: 309 VQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFM 368

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
           S++ AC   G    G+Q+HA L    +K   E    +  A+  +Y KCG + EA  +F++
Sbjct: 369 SILRACTAHGALEQGRQIHAEL----SKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSK 424

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
           M  +++V+W + LS Y+  G +  A+ +F  M  RN++SW +MI+G AQNG   +  +L 
Sbjct: 425 MANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELL 484

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
           S M+ EGF+P        + +C  L  LE G+ +HA+ V  G +S      +LI MY++C
Sbjct: 485 SSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKC 544

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G V  A  VF+ M N D+V+WNAM+A  GQHG+G  A++L+++MLKE + P+ IT   V+
Sbjct: 545 GQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVI 604

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
           SAC+ AGLV+EGR  F  M   + + P + HY   +DLL RAG+  EA++ I S+P +P 
Sbjct: 605 SACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPD 664

Query: 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKL 646
             +W ALL  C+ H N+ L  +AA  + +L P +A  Y+ LSN+YA  GRWDD+ +VR++
Sbjct: 665 ISVWHALLGACKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRV 724

Query: 647 MRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFV 706
           M DRG+KK+ G S IE+D ++H F+ +D AHPE  A++  LE L  EM++ GY PD +FV
Sbjct: 725 MDDRGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDAIHAELETLTKEMKEAGYTPDMRFV 784

Query: 707 LHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGR 766
           LHD++  QKE AL  HSEKLA+A+GL+K P G  +R++KNLR+CGDCH A KF+SK+  R
Sbjct: 785 LHDVDDVQKEKALCHHSEKLAIAYGLLKTPSGTPIRIMKNLRVCGDCHTATKFISKIRKR 844

Query: 767 EIVVRDGKRFHHFRDGKCSCGDYW 790
           EIV RD  RFH+F +G CSCGD+W
Sbjct: 845 EIVARDANRFHYFNNGTCSCGDFW 868



 Score =  160 bits (405), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 125/496 (25%), Positives = 212/496 (42%), Gaps = 88/496 (17%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           + S L  C+   P   +  R +H+H+   G +    + N LI +YCK   +  AR +FD 
Sbjct: 261 FVSLLNSCN--TPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDR 318

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           + + D+++ + +IA Y+ S                             Y    +     +
Sbjct: 319 MSKRDVISWSAMIAGYAQS----------------------------GYKDKESIDEVFQ 350

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           L   MRR+ V P+  TF S+L A       E Q  Q+H  + K G  L  S+  A+ ++Y
Sbjct: 351 LLERMRREGVFPNKVTFMSILRACTAHGALE-QGRQIHAELSKVGFELDRSLQTAIFNMY 409

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            KC S         +  A +VF +M  ++ ++WT+ ++ Y+K   L +A +    M    
Sbjct: 410 AKCGS---------IYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRN 460

Query: 256 GVAWNALISGYVHR-------EL--KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
            V+WN +I+GY          EL   M     Q D  T  +++ AC        GK VHA
Sbjct: 461 VVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHA 520

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366
             +    K   E    V  +L+ +Y KCG+V EAR +F++M  RD V+WNA+L+ Y    
Sbjct: 521 EAV----KLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGY---- 572

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
                                       Q+G G E + LF +M  E   P +      I+
Sbjct: 573 ---------------------------GQHGDGLEAVDLFKRMLKERVSPNEITLTAVIS 605

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGN--ALITMYARCGVVEAANCVFNTMPNVDS 484
           +C+  G ++ GR++  +++   +  +    +   ++ +  R G ++ A     +MP    
Sbjct: 606 ACSRAGLVQEGREIF-RMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPD 664

Query: 485 VS-WNAMIAALGQHGN 499
           +S W+A++ A   H N
Sbjct: 665 ISVWHALLGACKSHNN 680



 Score =  155 bits (393), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 179/391 (45%), Gaps = 44/391 (11%)

Query: 232 MTGYVKNDYLDAAREFLDG-MSENVGVAWNALISGYVHRELKMLMLRIQ----LDEFTYT 286
           MT  V ND   +  + LDG  S + G  W    +G +   +++L +  Q    ++  TY 
Sbjct: 1   MTSIVYNDGFASTGKELDGPTSVSGGEVWRLCKAGRLREAIQLLGIIKQRGLLVNSNTYG 60

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
            VI  CA +  F  GK VH  L     +   E  + + N+L+  Y K   V  A  +F +
Sbjct: 61  CVIEHCAKARRFEDGKMVHKQL----DELGVEIDIYLGNSLINFYSKFEDVASAEQVFRR 116

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
           M  RD+V+W+++++AY                               A N +  +    F
Sbjct: 117 MTLRDVVTWSSMIAAY-------------------------------AGNNHPAKAFDTF 145

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
            +M     +P    F   + +C     LE GR++H  +   G ++ ++   ALITMY++C
Sbjct: 146 ERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKC 205

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G +  A  VF+ M   + VSW A+I A  QH     A ELYEQML+ GI P+ +TF+++L
Sbjct: 206 GEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLL 265

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
           ++CN    +  GRR    +    G+          I + C+     EA+++ D +  K  
Sbjct: 266 NSCNTPEALNRGRRIHSHI-SERGLETDMIVANALITMYCKCNSVQEAREIFDRMS-KRD 323

Query: 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
              W A++AG    G  D   ++ +++FQL+
Sbjct: 324 VISWSAMIAGYAQSGYKDK--ESIDEVFQLL 352



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 102/427 (23%), Positives = 178/427 (41%), Gaps = 43/427 (10%)

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
           L + G   E ++L   ++  G       +   I  CA     E+G+ +H QL   G +  
Sbjct: 31  LCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEID 90

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           +  GN+LI  Y++   V +A  VF  M   D V+W++MIAA   + + A+A + +E+M  
Sbjct: 91  IYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTD 150

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
             I P+RITFL++L ACN+  ++++GR+   T+    G+          I +  + G+ S
Sbjct: 151 ANIEPNRITFLSILKACNNYSILEKGRK-IHTIVKAMGMETDVAVATALITMYSKCGEIS 209

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL-MPHHAGTYVLLSNMY 631
            A +V   +  +     W A++     H  ++   +  EQ+ Q  +  +A T+V L N  
Sbjct: 210 VACEVFHKMTERNVVS-WTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSC 268

Query: 632 ANLGRWDDAARVRKLMRDRGVKKE---------PGCSWIEVDNKVHVFLVDDTAHPE--- 679
                 +   R+   + +RG++ +           C    V     +F  D  +  +   
Sbjct: 269 NTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIF--DRMSKRDVIS 326

Query: 680 --------AQAVYKYLE------QLVLEMRKLGYVPDTKFVLHDMESDQKEYAL----ST 721
                   AQ+ YK  E      QL+  MR+ G  P+    +  + +     AL      
Sbjct: 327 WSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQI 386

Query: 722 HSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRD 781
           H+E   V F L +    A   +      CG  + A +  SK+  + +V      +  F  
Sbjct: 387 HAELSKVGFELDRSLQTAIFNMYAK---CGSIYEAEQVFSKMANKNVVA-----WTSFLS 438

Query: 782 GKCSCGD 788
               CGD
Sbjct: 439 MYIKCGD 445


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 292/791 (36%), Positives = 448/791 (56%), Gaps = 59/791 (7%)

Query: 12  LANRYASQLQLCDPRNPITS-SLARSVHAHMISSGFK-PREHIINRLIDIYCKSLKLVYA 69
           L NRYA+ L         T   +A +VH  ++ +  + P   ++N L+  Y KS +L  A
Sbjct: 8   LCNRYAAILSSAAGDGGRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARA 67

Query: 70  RTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSN 129
           R +FDE+P P++  R  L++A + S  V     +F   P   RD V YNA+IT +S   +
Sbjct: 68  RRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMP--ERDAVSYNALITGFSSTGS 125

Query: 130 GHAAIELFRDM-RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL 188
              +++L+R + R + V+P   T ++++  +A  + +      +HC V++ G G +  V 
Sbjct: 126 PARSVQLYRALLREESVRPTRITLSAMI-MVASALSDRALGHSVHCQVLRLGFGAYAFVG 184

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           + L+ +Y K           L+  ARRVF EM  +  + + T++TG ++   ++ A+   
Sbjct: 185 SPLVDMYAK---------MGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLF 235

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRI---------QLDEFTYTSVISACANSGLFR 299
             M +   + W  +++G     L++  L +          +D++T+ S+++AC       
Sbjct: 236 QLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALE 295

Query: 300 LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAIL 359
            GKQ+HAY+ RT      E ++ V +ALV +Y KC  +  A  +F +M  R         
Sbjct: 296 EGKQIHAYITRTWY----EDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCR--------- 342

Query: 360 SAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY 419
                                 N++SWT MI G  QN   EE ++ FS+M+++G KP D+
Sbjct: 343 ----------------------NIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDF 380

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
                I+SCA L +LE G Q H   + SG    ++  NAL+T+Y +CG +E A+ +F+ M
Sbjct: 381 TLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEM 440

Query: 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
              D VSW A++    Q G     I+L+E+ML  G+ PD +TF+ VLSAC+ AGLV++G 
Sbjct: 441 SFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGC 500

Query: 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI 599
            YF++M   +GI P +DHY   IDL  R+G+F EA++ I  +P  P A  W  LL+ CR+
Sbjct: 501 DYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRL 560

Query: 600 HGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCS 659
            GN+++G  AAE L +  P +  +YVLL +M+A  G+W + A +R+ MRDR VKKEPGCS
Sbjct: 561 RGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCS 620

Query: 660 WIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYAL 719
           WI+  NKVH+F  DD +HP +  +Y+ LE L  +M + GY PD   VLHD+    K + +
Sbjct: 621 WIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADKVHMI 680

Query: 720 STHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHF 779
           S HSEKLA+AFGL+ +P    +R++KNLR+C DCHNA KF+SK+ GR+I+VRD  RFH F
Sbjct: 681 SHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKF 740

Query: 780 RDGKCSCGDYW 790
            DG CSCGD+W
Sbjct: 741 SDGTCSCGDFW 751


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  549 bits (1415), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 291/791 (36%), Positives = 447/791 (56%), Gaps = 59/791 (7%)

Query: 12  LANRYASQLQLCDPRNPITS-SLARSVHAHMISSGFK-PREHIINRLIDIYCKSLKLVYA 69
           L NRYA+ L         T   +A +VH  ++ +  + P   ++N L+  Y KS +L  A
Sbjct: 8   LCNRYAAILSSAAGDGGRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARA 67

Query: 70  RTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSN 129
           R +FDE+P P++  R  L++A + S  V     +F   P   RD V YNA+IT +S   +
Sbjct: 68  RRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMP--ERDAVSYNALITGFSSTGS 125

Query: 130 GHAAIELFRDM-RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL 188
              +++L+R + R + V+P   T ++++  +A  + +      +HC V++ G G +  V 
Sbjct: 126 PARSVQLYRALLREESVRPTRITLSAMI-MVASALSDRALGHSVHCQVLRLGFGAYAFVG 184

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           + L+ +Y K           L+  ARRVF EM  +  + + T++TG ++   ++ A+   
Sbjct: 185 SPLVDMYAK---------MGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLF 235

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRI---------QLDEFTYTSVISACANSGLFR 299
             M +   + W  +++G     L++  L +          +D++T+ S+++AC       
Sbjct: 236 QLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASE 295

Query: 300 LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAIL 359
            GKQ+HAY+ RT      E ++ V +ALV +Y KC  +  A  +F +M  R         
Sbjct: 296 EGKQIHAYITRTWY----EDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCR--------- 342

Query: 360 SAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY 419
                                 N++SWT MI G  QN   EE ++ FS+M+++G KP D+
Sbjct: 343 ----------------------NIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDF 380

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
                I+SCA L +LE G Q H   + SG    ++  NAL+T+Y +CG +E A+ +F+ M
Sbjct: 381 TLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEM 440

Query: 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
              D VSW A++    Q G     I+L+E+ML  G+ PD +TF+ VLSAC+ AGLV++G 
Sbjct: 441 SFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGC 500

Query: 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI 599
            YF++M   + I P +DHY   IDL  R+G+F EA++ I  +P  P A  W  LL+ CR+
Sbjct: 501 DYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRL 560

Query: 600 HGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCS 659
            GN+++G  AAE L +  P +  +YVLL +M+A  G+W + A +R+ MRDR VKKEPGCS
Sbjct: 561 RGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCS 620

Query: 660 WIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYAL 719
           WI+  NKVH+F  DD +HP +  +Y+ LE L  +M + GY PD   VLHD+    K + +
Sbjct: 621 WIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADKVHMI 680

Query: 720 STHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHF 779
           S HSEKLA+AFGL+ +P    +R++KNLR+C DCHNA KF+SK+ GR+I+VRD  RFH F
Sbjct: 681 SHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKF 740

Query: 780 RDGKCSCGDYW 790
            DG CSCGD+W
Sbjct: 741 SDGTCSCGDFW 751


>gi|302142629|emb|CBI19832.3| unnamed protein product [Vitis vinifera]
          Length = 544

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 278/442 (62%), Positives = 336/442 (76%), Gaps = 16/442 (3%)

Query: 3   MKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCK 62
           M+NA  +R LAN+YA+QLQ C P NP++ S+AR+VHAHMI+SGFKPR +I+NRLID+YCK
Sbjct: 1   MRNAANVRRLANQYAAQLQQCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVYCK 60

Query: 63  SLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
           S  LV A  LFDEI QPDIVARTTLIAA+S++ N  LARE+F  TPL +RDTV YNAMIT
Sbjct: 61  SSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMIT 120

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTG 182
            YSHN++G  AIELFRD+ R+  +PDNFTFTSVL ALALIVE+EKQC Q+HC VVKSG+G
Sbjct: 121 GYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSG 180

Query: 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLD 242
             TSVLNAL+SV+VKC SSP VSS SLM AAR++FDEM ERDELSWTTM+ GYV+N  LD
Sbjct: 181 FVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELD 240

Query: 243 AAREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACA 293
           AAR+FLDGM+E + VAWNA+ISGYVH            KM +L IQ DEFTYTSV+SACA
Sbjct: 241 AARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACA 300

Query: 294 NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV 353
           N+G F  GKQVHAY+LRTE +P+ +FSL VNNAL TLYWKCGKV+EAR +FNQMP +DLV
Sbjct: 301 NAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLV 360

Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
           SWNAILS Y        A  LF  M   + +SW  MI+ L Q+G+G + L+LF  M  E 
Sbjct: 361 SWNAILSGYA-------AHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKED 413

Query: 414 FKPCDYAFAGAITSCAGLGALE 435
             P    F   +++C+  G ++
Sbjct: 414 ILPDRITFLTVLSTCSHAGLVQ 435



 Score =  304 bits (779), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 199/555 (35%), Positives = 294/555 (52%), Gaps = 73/555 (13%)

Query: 285 YTSVISACA--NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARD 342
           Y + +  C   N   + + + VHA+++ +  KP       + N L+ +Y K   +  A  
Sbjct: 14  YAAQLQQCCPHNPMSYSIARTVHAHMIASGFKPRGY----ILNRLIDVYCKSSDLVSAHH 69

Query: 343 IFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA--MRERNLLSWTVMISGLAQNGYGE 400
           +F+++ + D+V+   +++A+ SAG  + A+ +F A  +  R+ + +  MI+G + N  G 
Sbjct: 70  LFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGF 129

Query: 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG-RQLHAQLVHSGYDSSLSAGNAL 459
             ++LF  +   GF+P ++ F   + + A +   E   +Q+H  +V SG     S  NAL
Sbjct: 130 GAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNAL 189

Query: 460 ITMYARCGV---------VEAANCVFNTMPNVDS-------------------------- 484
           ++++ +C           + AA  +F+ M   D                           
Sbjct: 190 LSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGM 249

Query: 485 -----VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
                V+WNAMI+    HG    A+E++ +M   GI  D  T+ +VLSAC +AG    G+
Sbjct: 250 TEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGK 309

Query: 540 RYFETMHGPYGIPPGEDHYA---RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           +    +      P  +   +       L  + GK  EA+ V + +P K     W A+L+G
Sbjct: 310 QVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVS-WNAILSG 368

Query: 597 CRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEP 656
                       AA  LF  MP+     V  + M A LG+    A+  +L  +  +K++ 
Sbjct: 369 -----------YAAHCLFLTMPYLDS--VSWNAMIAALGQHGHGAQALELF-ELMLKED- 413

Query: 657 GCSWIEVDNKVHVFLVDDTAHPE-AQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQK 715
               I  D    + ++   +H    QAVY YLE+L L+MRKLGY+PDTKFVLHDMES+QK
Sbjct: 414 ----ILPDRITFLTVLSTCSHAGLVQAVYNYLEELGLKMRKLGYIPDTKFVLHDMESEQK 469

Query: 716 EYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKR 775
           EY LSTHSEKLAV FGL+KLP GATVRV KNLRICGDCHNAFKFMSKVV REIVVRDGKR
Sbjct: 470 EYVLSTHSEKLAVGFGLLKLPLGATVRVFKNLRICGDCHNAFKFMSKVVEREIVVRDGKR 529

Query: 776 FHHFRDGKCSCGDYW 790
           FHHF++G+CSCG+YW
Sbjct: 530 FHHFKNGECSCGNYW 544



 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 155/426 (36%), Positives = 234/426 (54%), Gaps = 68/426 (15%)

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H  ++ SG      +LN LI VY  C SS  VS       A  +FDE+ + D ++ TT+
Sbjct: 35  VHAHMIASGFKPRGYILNRLIDVY--CKSSDLVS-------AHHLFDEIRQPDIVARTTL 85

Query: 232 MTGYVKNDYLDAARE--FLDGMSENVGVAWNALISGYVHR-------ELKMLMLR--IQL 280
           +  +      + ARE  F   +     V +NA+I+GY H        EL   +LR   + 
Sbjct: 86  IAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRP 145

Query: 281 DEFTYTSVISACANSGLF----RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
           D FT+TSV+ A A   L     +  +Q+H  ++++ +     F   V NAL++++ KC  
Sbjct: 146 DNFTFTSVLGALA---LIVEDEKQCQQIHCAVVKSGSG----FVTSVLNALLSVFVKCAS 198

Query: 337 ---------VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWT 387
                    +  AR +F++M ERD +SW  +++ YV  G +D A+   + M E+ +++W 
Sbjct: 199 SPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWN 258

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447
            MISG   +G+  E L++F +M L G +  ++ +   +++CA  G   +G+Q+HA ++ +
Sbjct: 259 AMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRT 318

Query: 448 ----GYDSSLSAGNALITMYARCGVVE------------------------AANCVFNTM 479
                 D SLS  NAL T+Y +CG V+                        AA+C+F TM
Sbjct: 319 EPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYAAHCLFLTM 378

Query: 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
           P +DSVSWNAMIAALGQHG+GA+A+EL+E MLKE ILPDRITFLTVLS C+HAGLV+   
Sbjct: 379 PYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVQAVY 438

Query: 540 RYFETM 545
            Y E +
Sbjct: 439 NYLEEL 444


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 309/849 (36%), Positives = 448/849 (52%), Gaps = 149/849 (17%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y   LQ C     +  ++ + VH H++  G KP  +IIN L+ +Y               
Sbjct: 47  YVKLLQSCVKAKDL--AVGKQVHEHILRFGMKPNVYIINTLLKLYVHC------------ 92

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
                               +V  AR +F+K     +  V +N MI+ Y+H   G  A  
Sbjct: 93  -------------------GSVNEARRLFDK--FSNKSVVSWNVMISGYAHRGLGQEAFN 131

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LF  M+++ ++PD FTF S+LSA +          ++H  V+++G     +V NALIS+Y
Sbjct: 132 LFTLMQQEGLEPDKFTFVSILSACSSPAAL-NWGREVHVRVMEAGLANNATVGNALISMY 190

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            KC S         +  ARRVFD M  RDE+SWTT+   Y +                  
Sbjct: 191 AKCGS---------VRDARRVFDAMASRDEVSWTTLTGAYAE------------------ 223

Query: 256 GVAWNALISGYVHRELK----MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
                   SGY    LK    ML   ++    TY +V+SAC +      GKQ+HA ++ +
Sbjct: 224 --------SGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVES 275

Query: 312 EAKPTPEFSLPVNNALVTLYWKCG-------------------------------KVNEA 340
           E        + V+ AL  +Y KCG                               ++ EA
Sbjct: 276 EHHS----DVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEA 331

Query: 341 RDIFNQM------PER---------------------------------DLVSWNAILSA 361
             +F++M      P+R                                 D+   NA+++ 
Sbjct: 332 HGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINM 391

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
           Y  AG + +A+ +F+ M +R+++SWT ++ G A  G   E    F +M  +G +     +
Sbjct: 392 YSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITY 451

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
              + +C+   AL+ G+++HA++V +G  + L+  NAL++MY +CG VE A  V   M  
Sbjct: 452 MCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMST 511

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY 541
            D V+WN +I  L Q+G G  A++ +E M  E + P+  TF+ V+SAC    LV+EGRR 
Sbjct: 512 RDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQ 571

Query: 542 FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
           F +M   YGI P E HYA  +D+L RAG   EA+DVI ++PFKPSA +W ALLA CR HG
Sbjct: 572 FASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHG 631

Query: 602 NIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWI 661
           N+++G QAAEQ  +L P +AGTYV LS +YA  G W D A++RKLM++RGVKKEPG SWI
Sbjct: 632 NVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWI 691

Query: 662 EVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALST 721
           EV  +VH F+  D +HP  + +Y  LE L  +++ LGYVPDT+FV+HD++ + KE A+  
Sbjct: 692 EVAGEVHSFVAGDQSHPRTEEIYSELEALTKQIKSLGYVPDTRFVMHDLDQEGKERAVCH 751

Query: 722 HSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRD 781
           HSEKLA+A+GL+  P    +RV KNLR+C DCH A KF+SK+ GREI+ RD  RFHHF++
Sbjct: 752 HSEKLAIAYGLISTPPETPIRVSKNLRVCTDCHTATKFISKITGREIIARDAHRFHHFKN 811

Query: 782 GKCSCGDYW 790
           G+CSCGDYW
Sbjct: 812 GECSCGDYW 820



 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/392 (30%), Positives = 180/392 (45%), Gaps = 84/392 (21%)

Query: 279 QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
           Q+D + Y  ++ +C  +    +GKQVH ++LR   KP    ++ + N L+ LY  CG VN
Sbjct: 41  QVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKP----NVYIINTLLKLYVHCGSVN 96

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL--------------- 383
           EAR +F++   + +VSWN ++S Y   GL  EA +LF  M++  L               
Sbjct: 97  EARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACS 156

Query: 384 ----LSW------TVMISGLAQN------------------------------------- 396
               L+W       VM +GLA N                                     
Sbjct: 157 SPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTT 216

Query: 397 --------GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG 448
                   GY +E LK +  M  EG +P    +   +++C  L ALE G+Q+HAQ+V S 
Sbjct: 217 LTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESE 276

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
           + S +    AL  MY +CG V+ A  VF  +PN D ++WN MI  L   G    A  ++ 
Sbjct: 277 HHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFH 336

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF----IDL 564
           +MLKE + PDR+T+L +LSAC   G +  G+     +H    +  G     RF    I++
Sbjct: 337 RMLKECVAPDRVTYLAILSACARPGGLACGKE----IHA-RAVKDGLVSDVRFGNALINM 391

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
             +AG   +A+ V D +P K     W AL+ G
Sbjct: 392 YSKAGSMKDARQVFDRMP-KRDVVSWTALVGG 422



 Score = 86.3 bits (212), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 112/278 (40%), Gaps = 40/278 (14%)

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
           +G +   Y +   + SC     L  G+Q+H  ++  G   ++   N L+ +Y  CG V  
Sbjct: 38  KGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNE 97

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
           A  +F+   N   VSWN MI+     G G  A  L+  M +EG+ PD+ TF+++LSAC+ 
Sbjct: 98  ARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSS 157

Query: 532 AGLVKEGRR-YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP-------- 582
              +  GR  +   M    G+          I +  + G   +A+ V D++         
Sbjct: 158 PAALNWGREVHVRVMEA--GLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWT 215

Query: 583 --------------------------FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
                                      +PS   +  +L+ C     ++ G Q   Q+ + 
Sbjct: 216 TLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVE- 274

Query: 617 MPHHAGTYV--LLSNMYANLGRWDDAARVRKLMRDRGV 652
             HH+   V   L+ MY   G   DA  V + + +R V
Sbjct: 275 SEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDV 312


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 291/830 (35%), Positives = 448/830 (53%), Gaps = 109/830 (13%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + VH  +   G     ++ N LI+ Y K   +     +F  +   D+V  +++IAAY+ 
Sbjct: 97  GKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAG 156

Query: 94  SDNVKLAREMF------NKTPLKM-------------------------------RDTVF 116
           +++   A + F      N  P ++                                D   
Sbjct: 157 NNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAV 216

Query: 117 YNAMITAYSHNSNGHAAIELFRDMRRDDV------------------------------- 145
             A+IT YS       A E+F+ M+  +V                               
Sbjct: 217 ATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGI 276

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVS 205
            P+  TF S+L++     E   +  ++H  + + G      V NALI++Y KC       
Sbjct: 277 SPNAVTFVSLLNSCN-TPEALNRGRRIHSHISERGLETDVVVANALITMYCKC------- 328

Query: 206 SRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265
             + +  AR  FD M +RD +SW+ M+ GY ++ Y D  +E LD                
Sbjct: 329 --NCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQD--KESLD---------------- 368

Query: 266 YVHRELKMLMLRIQLD-----EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
               E+  L+ R++ +     + T+ S++ AC+  G    G+Q+HA +    +K   E  
Sbjct: 369 ----EVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEI----SKVGFESD 420

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
             +  A+  +Y KCG + EA  +F++M  +++V+W ++L+ Y+  G +  A+ +F  M  
Sbjct: 421 RSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMST 480

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
           RN++SW +MI+G AQ+G   +  +L S M++EGF+P        + +C  L ALE G+ +
Sbjct: 481 RNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLV 540

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           HA+ V  G +S      +LI MY++CG V  A  VF+ + N D+V+WNAM+A  GQHG G
Sbjct: 541 HAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIG 600

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
             A++L+++MLKE + P+ ITF  V+SAC  AGLV+EGR  F  M   + + PG+ HY  
Sbjct: 601 PEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGC 660

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
            +DLL RAG+  EA++ I  +P +P   +W ALL  C+ H N+ L   AA  + +L P +
Sbjct: 661 MVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPSN 720

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEA 680
           A  YV LSN+YA  GRWDD+ +VRK+M D+G+KK+ G S IE+D ++H F+ +D AHPE 
Sbjct: 721 ASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAEDCAHPEI 780

Query: 681 QAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT 740
            +++  LE L  EM++ GY PD +FVLHD++  QKE AL  HSEKLA+A+GL+K P G  
Sbjct: 781 DSIHAELEMLTKEMKEAGYTPDMRFVLHDVDEVQKERALCHHSEKLAIAYGLLKTPPGTP 840

Query: 741 VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +R++KNLR+CGDCH A KF+SK+  REIV RD  RFH+F++G CSCGD+W
Sbjct: 841 IRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFKNGTCSCGDFW 890



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 134/498 (26%), Positives = 221/498 (44%), Gaps = 92/498 (18%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           + S L  C+   P   +  R +H+H+   G +    + N LI +YCK   +  AR  FD 
Sbjct: 283 FVSLLNSCN--TPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDR 340

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           + + D+++ + +IA Y+ S                             Y    +     +
Sbjct: 341 MSKRDVISWSAMIAGYAQS----------------------------GYQDKESLDEVFQ 372

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           L   MRR+ V P+  TF S+L A ++    E Q  Q+H  + K G     S+  A+ ++Y
Sbjct: 373 LLERMRREGVFPNKVTFMSILKACSVHGALE-QGRQIHAEISKVGFESDRSLQTAIFNMY 431

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            KC S         +  A +VF +M  ++ ++W +++T Y+K   L +A +    MS   
Sbjct: 432 AKCGS---------IYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRN 482

Query: 256 GVAWNALISGYVHR-------EL--KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
            V+WN +I+GY          EL   M +   Q D  T  S++ AC        GK VHA
Sbjct: 483 VVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHA 542

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366
             +    K   E    V  +L+ +Y KCG+V EAR +F+++  RD V+WNA+L+ Y   G
Sbjct: 543 EAV----KLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHG 598

Query: 367 LIDEAKSLFEAM-RER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
           +  EA  LF+ M +ER   N +++T +IS   + G  +EG ++F  M+ E F+       
Sbjct: 599 IGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQ-EDFR------- 650

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
                      ++ G+Q      H G          ++ +  R G ++ A      MP  
Sbjct: 651 -----------MKPGKQ------HYG---------CMVDLLGRAGRLQEAEEFIQRMPCE 684

Query: 483 DSVS-WNAMIAALGQHGN 499
             +S W+A++ A   H N
Sbjct: 685 PDISVWHALLGACKSHDN 702



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 174/391 (44%), Gaps = 44/391 (11%)

Query: 232 MTGYVKNDYLDAAREFLDG-MSENVGVAWNALISGYVHRELKMLMLRIQ----LDEFTYT 286
           MT  V N+   +  E L G  S + G  W    +G +   +++L +  Q    ++  TY 
Sbjct: 23  MTSIVYNNGFASTGEELAGPRSVSGGEVWRLCKAGRLKEAIQLLGIIKQRGLLVNSNTYG 82

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
            +I  CA    F  GK VH        K   E  L +                       
Sbjct: 83  CIIEHCAKLRRFEDGKMVH--------KQLDELGLAI----------------------- 111

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
               D+   N++++ Y   G +   + +F  M  R++++W+ MI+  A N +  +    F
Sbjct: 112 ----DIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTF 167

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
            +M+    +P    F   + +C     LE  R++H  +  SG ++ ++   ALITMY++C
Sbjct: 168 ERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKC 227

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G +  A  +F  M   + VSW A+I A  QH     A ELYE+ML+ GI P+ +TF+++L
Sbjct: 228 GEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLL 287

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
           ++CN    +  GRR    +    G+          I + C+     +A++  D +  K  
Sbjct: 288 NSCNTPEALNRGRRIHSHI-SERGLETDVVVANALITMYCKCNCIQDARETFDRMS-KRD 345

Query: 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
              W A++AG    G  D   ++ +++FQL+
Sbjct: 346 VISWSAMIAGYAQSGYQDK--ESLDEVFQLL 374



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 125/264 (47%), Gaps = 3/264 (1%)

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
           L + G  +E ++L   ++  G       +   I  CA L   E+G+ +H QL   G    
Sbjct: 53  LCKAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAID 112

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           +  GN+LI  Y++ G V +   VF  M   D V+W++MIAA   + + A+A + +E+M  
Sbjct: 113 IYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKD 172

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
             I P+RITFL++L ACN+  ++++ R    T+    G+          I +  + G+ S
Sbjct: 173 ANIEPNRITFLSILKACNNYSMLEKARE-IHTVVKASGMETDVAVATALITMYSKCGEIS 231

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL-MPHHAGTYVLLSNMY 631
            A ++   +  +     W A++     H  ++   +  E++ Q  +  +A T+V L N  
Sbjct: 232 LACEIFQKMKERNVVS-WTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSC 290

Query: 632 ANLGRWDDAARVRKLMRDRGVKKE 655
                 +   R+   + +RG++ +
Sbjct: 291 NTPEALNRGRRIHSHISERGLETD 314


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 310/851 (36%), Positives = 449/851 (52%), Gaps = 153/851 (17%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y   LQ C     +  ++ + VH H++  G KP  +I N                     
Sbjct: 31  YVKLLQSCVKAKDL--AVGKQVHEHILRCGVKPNVYITN--------------------- 67

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
                     TL+  Y+   +V  AR++F+K     +  V +N MI+ Y+H      A  
Sbjct: 68  ----------TLLKLYAHCGSVNEARQLFDK--FSNKSVVSWNVMISGYAHRGLAQEAFN 115

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALA--LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
           LF  M+++ ++PD FTF S+LSA +   ++   ++   +H  V+++G    T+V NALIS
Sbjct: 116 LFTLMQQERLEPDKFTFVSILSACSSPAVLNWGRE---IHVRVMEAGLANDTTVGNALIS 172

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
           +Y KC S         +  ARRVFD M  RDE+SWTT+   Y +                
Sbjct: 173 MYAKCGS---------VRDARRVFDAMASRDEVSWTTLTGAYAE---------------- 207

Query: 254 NVGVAWNALISGYVHRELK----MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
                     SGY    LK    ML  R++    TY +V+SAC +      GKQ+HA+++
Sbjct: 208 ----------SGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIV 257

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKC-------------------------------GKVN 338
            +E        + V+ AL  +Y KC                               G++ 
Sbjct: 258 ESEYHS----DVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLE 313

Query: 339 EARDIFNQM------PER---------------------------------DLVSWNAIL 359
           EA   F++M      P+R                                 D+   NA++
Sbjct: 314 EAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALI 373

Query: 360 SAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY 419
           + Y  AG + +A+ +F+ M +R+++SWT ++   A      E    F QM  +G K    
Sbjct: 374 NMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKI 433

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
            +   + +C+   AL+ G+++HA++V +G  + L+  NAL++MY +CG VE A  VF  M
Sbjct: 434 TYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGM 493

Query: 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
              D V+WN +I  LGQ+G G  A++ YE M  EG+ P+  TF+ VLSAC    LV+EGR
Sbjct: 494 SMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGR 553

Query: 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI 599
           R F  M   YGI P E HYA  +D+L RAG   EA+DVI ++P KPSA +W ALLA CRI
Sbjct: 554 RQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRI 613

Query: 600 HGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCS 659
           H N+++G +AAE   +L P +AG YV LS +YA  G W D A++RK M++RGVKKEPG S
Sbjct: 614 HCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRS 673

Query: 660 WIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYAL 719
           WIE+  +VH F+  D +HP  Q +Y  LE L  +M+ LGYVPDT+FV+HD++ + KE A+
Sbjct: 674 WIEIAGEVHSFVARDQSHPRTQEIYAELETLKKQMKSLGYVPDTRFVMHDLDDEGKERAV 733

Query: 720 STHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHF 779
             HSEKLA+A+GL+  P G  +R+ KNLR+C DCH A KF+SK+  REI+ RD  RFHHF
Sbjct: 734 CHHSEKLAIAYGLISTPPGTPIRISKNLRVCTDCHTATKFISKITKREIIARDAHRFHHF 793

Query: 780 RDGKCSCGDYW 790
           ++G+CSCGDYW
Sbjct: 794 KNGECSCGDYW 804


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  543 bits (1398), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 281/793 (35%), Positives = 452/793 (56%), Gaps = 62/793 (7%)

Query: 10  RTLANRYASQLQLCDPRNPITSSLARSVHAHMISS-GFKPREHIINRLIDIYCKSLKLVY 68
           R L+++YA+ L       P    +A ++H  ++ +    P  +++N L+  Y K+ +   
Sbjct: 3   RPLSSQYAALLSAAARTEP---HVAGALHCVILRTLPHPPPTYLLNHLLTAYGKAGRHAR 59

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           AR +FD +P P++     L++  + +  +     +F    +  RD V YNA+I  +S   
Sbjct: 60  ARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALF--ASMTQRDIVSYNAVIAGFSGGG 117

Query: 129 NGHAAIELFRDMRRDD--VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS 186
           +   A+ ++  + + D  V+P   T ++++ A A  + +     Q HC +++ G G    
Sbjct: 118 SHAQAVRVYLALLQADSSVRPSRITMSTMVMA-ASALGDRALGKQFHCQILRLGFGANAF 176

Query: 187 VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAARE 246
           V + L+ +Y K          SL+G A+R FDE+  ++ + + TM+TG ++   ++ AR 
Sbjct: 177 VGSPLVDMYAK---------MSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARR 227

Query: 247 FLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGL 297
             + M++   + W  +++G+    L         +M    I +D++T+ S+++AC     
Sbjct: 228 LFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSA 287

Query: 298 FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA 357
              GKQ+HAY++RT      + ++ V +ALV +Y KC  +  A  +F +M  +       
Sbjct: 288 LEQGKQIHAYIIRTRY----DDNVFVGSALVDMYSKCRSIKLAETVFRRMTCK------- 336

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
                                   N++SWT +I G  QNG  EE +++FS+M+ +G  P 
Sbjct: 337 ------------------------NIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPD 372

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
           DY     I+SCA L +LE G Q H   + SG    ++  NAL+T+Y +CG +E A+ +F+
Sbjct: 373 DYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFD 432

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKE 537
            M   D VSW A+++   Q G     I+L+E+ML +G+ PD +TF+ VLSAC+ AG V++
Sbjct: 433 EMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEK 492

Query: 538 GRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
           GR YF +M   +GI P +DHY   IDL  R+GK  EA++ I  +P  P A  W  LL+ C
Sbjct: 493 GRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSAC 552

Query: 598 RIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPG 657
           R+ G++++G  AAE L ++ P +  +YVLL +M+A  G+W++ A++R+ MRDR VKKEPG
Sbjct: 553 RLRGDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPG 612

Query: 658 CSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEY 717
           CSWI+  NKVH+F  DD +HP ++ +Y+ LE L  +M + GY PD   VLHD+    K +
Sbjct: 613 CSWIKYKNKVHIFSADDQSHPCSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVH 672

Query: 718 ALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFH 777
            +S HSEKLA+AFGL+ +P    +R++KNLR+C DCHNA KF+SK+ GR+I+VRD  RFH
Sbjct: 673 MVSHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFH 732

Query: 778 HFRDGKCSCGDYW 790
            F DG CSCGD+W
Sbjct: 733 KFSDGVCSCGDFW 745


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 297/822 (36%), Positives = 452/822 (54%), Gaps = 72/822 (8%)

Query: 33  LARSVHAHMISSGFKPREHII-NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           L R + A  +  G   R  +  N ++  Y ++  +  AR LFD +P  D+ +  +++  Y
Sbjct: 108 LGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTGY 167

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
             S  +  A  +F + P   R+ V +  MI+ Y          ++FR M  +   PD   
Sbjct: 168 CHSRQMVDAWNLFKQMP--QRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSN 225

Query: 152 FTSVLSALA----LIVEEEKQCMQMHCTVVKSGTGLFTSVLN------------------ 189
           F SVLSA+     L V E  + + +  T  +S   + TS+LN                  
Sbjct: 226 FASVLSAVTGLQDLGVLEVLRPLVLK-TGFESDVVIGTSILNVYTRDASALDIAIKFFDG 284

Query: 190 -----------------------ALISVYVKCVSSPFVSSRSLMGA---------ARRVF 217
                                  A I+VY +       S  +L+           AR +F
Sbjct: 285 MVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLARCGRITEARILF 344

Query: 218 DEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH--RELKMLM 275
           +++P+   +SW  M+TGY++N  +D A+E  D M     ++W  +I+GY    R  + L 
Sbjct: 345 EQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALD 404

Query: 276 LRIQLDE-------FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALV 328
           L   L          + TS   AC++ G    G+QVH+  +    K   +F+  V NAL+
Sbjct: 405 LLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAV----KAGCQFNSYVCNALI 460

Query: 329 TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV 388
           ++Y KC  +   R +FN+M  +D VSWN+ ++A V   ++++A+ +F+ M  R+++SWT 
Sbjct: 461 SMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTT 520

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG 448
           +IS  AQ   G+E ++ F  M  E  KP        ++ C GLG+ + G+Q+H   +  G
Sbjct: 521 IISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHG 580

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
            DS L   NAL++MY +CG  ++   VF++M   D  +WN  I    QHG G  AI++YE
Sbjct: 581 MDSELIVANALMSMYFKCGCADSHK-VFDSMEERDIFTWNTFITGCAQHGLGREAIKMYE 639

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568
            M   G+LP+ +TF+ +L+AC+HAGLV EG ++F++M   YG+ P  +HYA  +DLL R 
Sbjct: 640 HMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRT 699

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628
           G    A+  I  +P +P   IW ALL  C+IH N ++G +AAE+LF   P +AG YV+LS
Sbjct: 700 GDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLS 759

Query: 629 NMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLE 688
           N+Y++LG W + A +RK+M+ RGV KEPGCSW+++ NKVH F+  D  H + + +   L+
Sbjct: 760 NIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKIEEIDYTLQ 819

Query: 689 QLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLR 748
            L   +R  GYVPDT+FVLHD++ +QKE +L  HSEKLAVA+GL+  P G  ++++KNLR
Sbjct: 820 DLYTLLRGTGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLR 879

Query: 749 ICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           ICGDCH   KF+S V  R+I +RDG RFHHFR+G CSCGD+W
Sbjct: 880 ICGDCHTFIKFVSHVTKRDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 150/497 (30%), Positives = 245/497 (49%), Gaps = 63/497 (12%)

Query: 56  LIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTV 115
           L+  Y +  +++ AR +FD +P+ + VA   +++ Y  + ++ +AR +F+  P   RD  
Sbjct: 101 LLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMP--SRDVT 158

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC---MQM 172
            +N+M+T Y H+     A  LF+ M + ++     T+T ++S    I +  K       M
Sbjct: 159 SWNSMVTGYCHSRQMVDAWNLFKQMPQRNL----VTWTVMISGYVRIEQHGKGWDIFRMM 214

Query: 173 HCTVVKSGTGLFTSVLNALISVY---VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWT 229
           H          F SVL+A+  +    V  V  P V                 E D +  T
Sbjct: 215 HHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGF------------ESDVVIGT 262

Query: 230 TMMTGYVKN-DYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSV 288
           +++  Y ++   LD A +F DGM E                           +E+T++++
Sbjct: 263 SILNVYTRDASALDIAIKFFDGMVER--------------------------NEYTWSTM 296

Query: 289 ISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
           I+A ++ G  R+   +  Y         P  S+P   AL+T   +CG++ EAR +F Q+P
Sbjct: 297 IAALSHGG--RIDAAIAVY------GRDPVKSIPSQTALLTGLARCGRITEARILFEQIP 348

Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQ 408
           +  +VSWNA+++ Y+  G++DEAK LF+ M  RN +SW  MI+G AQNG  EE L L   
Sbjct: 349 DPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQA 408

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
           +   G  P   +   +  +C+ +GALE GRQ+H+  V +G   +    NALI+MY +C  
Sbjct: 409 LHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRN 468

Query: 469 VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
           +E    VFN M   D+VSWN+ IAAL Q+     A  +++ ML      D +++ T++SA
Sbjct: 469 MEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSR----DVVSWTTIISA 524

Query: 529 CNHAGLVKEGRRYFETM 545
              A    E   +F+TM
Sbjct: 525 YAQAERGDEAVEFFKTM 541



 Score =  159 bits (402), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 114/386 (29%), Positives = 184/386 (47%), Gaps = 47/386 (12%)

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS-ENVGVAWNALISGYVHREL 271
           AR VFD MP RD ++W +M++ Y  +  L+ AR   D +S  NV  A   L+SGY     
Sbjct: 52  AREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVRTA-TILLSGYA---- 106

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                                      RLG+ + A   R      PE +    NA+V+ Y
Sbjct: 107 ---------------------------RLGRVLDA---RRVFDGMPERNTVAWNAMVSCY 136

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            + G +  AR +F+ MP RD+ SWN++++ Y  +  + +A +LF+ M +RNL++WTVMIS
Sbjct: 137 VQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMIS 196

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
           G  +     +G  +F  M  EG  P    FA  +++  GL  L     L   ++ +G++S
Sbjct: 197 GYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFES 256

Query: 452 SLSAGNALITMYAR-CGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
            +  G +++ +Y R    ++ A   F+ M   +  +W+ MIAAL   G    AI +Y + 
Sbjct: 257 DVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRD 316

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
             + I P +   LT L+ C   G + E R  FE +  P  +      +   I    + G 
Sbjct: 317 PVKSI-PSQTALLTGLARC---GRITEARILFEQIPDPIVVS-----WNAMITGYMQNGM 367

Query: 571 FSEAKDVIDSLPFKPSAPIWEALLAG 596
             EAK++ D +PF+ +   W  ++AG
Sbjct: 368 VDEAKELFDRMPFRNTIS-WAGMIAG 392



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 113/200 (56%), Gaps = 16/200 (8%)

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           + G++ EAR++F+ MP RD+++WN+++SAY ++G++++A+ LF+A+   N+ + T+++SG
Sbjct: 45  RLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVRTATILLSG 104

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS- 451
            A+ G   +  ++F     +G    +     A+ SC     ++NG    A+ +     S 
Sbjct: 105 YARLGRVLDARRVF-----DGMPERNTVAWNAMVSC----YVQNGDITMARRLFDAMPSR 155

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA---LGQHGNGARAIELYE 508
            +++ N+++T Y     +  A  +F  MP  + V+W  MI+    + QHG G    +++ 
Sbjct: 156 DVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKG---WDIFR 212

Query: 509 QMLKEGILPDRITFLTVLSA 528
            M  EG  PD+  F +VLSA
Sbjct: 213 MMHHEGASPDQSNFASVLSA 232



 Score = 48.9 bits (115), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 91/213 (42%), Gaps = 19/213 (8%)

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
           VH   D S  A +A I   AR G +  A  VF+ MP+ D ++WN+MI+A    G    A 
Sbjct: 27  VHRALDKS--AHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDAR 84

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
            L++ +    +     T   +LS     G V + RR F+ M     +      +   +  
Sbjct: 85  ILFDAISGGNVR----TATILLSGYARLGRVLDARRVFDGMPERNTVA-----WNAMVSC 135

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG-CRIHGNIDLGIQAAEQLFQLMPH-HAG 622
             + G  + A+ + D++P +     W +++ G C     +D     A  LF+ MP  +  
Sbjct: 136 YVQNGDITMARRLFDAMPSRDVTS-WNSMVTGYCHSRQMVD-----AWNLFKQMPQRNLV 189

Query: 623 TYVLLSNMYANLGRWDDAARVRKLMRDRGVKKE 655
           T+ ++ + Y  + +      + ++M   G   +
Sbjct: 190 TWTVMISGYVRIEQHGKGWDIFRMMHHEGASPD 222


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  540 bits (1390), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 291/758 (38%), Positives = 440/758 (58%), Gaps = 65/758 (8%)

Query: 68  YARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHN 127
           Y +  F++   P  V  T  I+ +  + +  LA  +F+  PL  R++V YNAMI+ Y  N
Sbjct: 23  YPKPHFED---PHTVKCTKAISTHMRNGHCDLALCVFDAMPL--RNSVSYNAMISGYLRN 77

Query: 128 SNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSV 187
           +    A +LF  M   D+    F++  +L+  A                ++    LF S+
Sbjct: 78  AKFSLARDLFDKMPHKDL----FSWNLMLTGYA------------RNRRLRDARMLFDSM 121

Query: 188 -------LNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY 240
                   NA++S YV+            +  AR VFD MP ++ +SW  ++  YV++  
Sbjct: 122 PEKDVVSWNAMLSGYVRS---------GHVDEARDVFDRMPHKNSISWNGLLAAYVRSGR 172

Query: 241 LDAAREFLDGMSENVGVAWNALISGYVHREL----KMLMLRIQL-DEFTYTSVISACANS 295
           L+ AR   +  S+   ++ N L+ GYV R +    + L  +I + D  ++ ++IS  A  
Sbjct: 173 LEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQD 232

Query: 296 G----------------LFRLGKQVHAYL---LRTEAK----PTPEFSLPVNNALVTLYW 332
           G                +F     V+AY+   +  EA+      P+      N ++  Y 
Sbjct: 233 GDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYA 292

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           +  +++  R++F +MP  ++ SWN ++S Y   G + +A++LF+ M +R+ +SW  +I+G
Sbjct: 293 QYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAG 352

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
            AQNG  EE + +  +M+ +G       F  A+++CA + ALE G+Q+H Q+V +GY+  
Sbjct: 353 YAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKG 412

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
              GNAL+ MY +CG ++ A  VF  + + D VSWN M+A   +HG G +A+ ++E M+ 
Sbjct: 413 CLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMIT 472

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
            G+ PD IT + VLSAC+H GL   G  YF +M+  YGI P   HYA  IDLL RAG   
Sbjct: 473 AGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLE 532

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632
           EA+++I ++PF+P A  W ALL   RIHGN++LG QAAE +F++ PH++G YVLLSN+YA
Sbjct: 533 EAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYA 592

Query: 633 NLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVL 692
             GRW D +++R  MR  GV+K PG SW+EV NK+H F V D  HPE   +Y +LE+L L
Sbjct: 593 ASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNKIHTFTVGDCFHPEKGRIYAFLEELDL 652

Query: 693 EMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGD 752
           +M+  GYV  TK VLHD+E ++K++ L  HSEKLAVAFG++ +P G  +RV+KNLR+C D
Sbjct: 653 KMKHEGYVSSTKLVLHDVEEEEKKHMLKYHSEKLAVAFGILTMPSGKPIRVMKNLRVCED 712

Query: 753 CHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           CHNA K +SK+VGR I+VRD  R+HHF +G CSC DYW
Sbjct: 713 CHNAIKHISKIVGRLIIVRDSHRYHHFSEGICSCRDYW 750



 Score =  168 bits (426), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 134/511 (26%), Positives = 225/511 (44%), Gaps = 91/511 (17%)

Query: 27  NPITSSLARSVHAHMISSGFK--PREHII--NRLIDIYCKSLKLVYARTLFDEIPQPDIV 82
           N + S   RS H       F   P ++ I  N L+  Y +S +L  AR LF+     +++
Sbjct: 130 NAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELI 189

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR 142
           +   L+  Y   + +  AR++F++ P+  RD + +N MI+ Y+ + +   A  LF +   
Sbjct: 190 SCNCLMGGYVKRNMLGDARQLFDQIPV--RDLISWNTMISGYAQDGDLSQARRLFEESPV 247

Query: 143 DDVKPDNFTFTSVLSALAL---------IVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
            DV    FT+T+++ A            + +E  Q  +M   V+ +G   +         
Sbjct: 248 RDV----FTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKR------- 296

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
                           M   R +F+EMP  +  SW  M++GY +N  L  AR   D M +
Sbjct: 297 ----------------MDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQ 340

Query: 254 NVGVAWNALISGY----VHRELKMLMLRIQ-----LDEFTYTSVISACANSGLFRLGKQV 304
              V+W A+I+GY    ++ E   +++ ++     L+  T+   +SACA+     LGKQV
Sbjct: 341 RDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQV 400

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVS 364
           H  ++RT      E    V NALV +Y KCG ++EA D+F  +  +D+VSWN +L+ Y  
Sbjct: 401 HGQVVRT----GYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYAR 456

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
            G                               +G + L +F  M   G KP +    G 
Sbjct: 457 HG-------------------------------FGRQALTVFESMITAGVKPDEITMVGV 485

Query: 425 ITSCAGLGALENGRQ-LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NV 482
           +++C+  G  + G +  H+     G   +      +I +  R G +E A  +   MP   
Sbjct: 486 LSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEP 545

Query: 483 DSVSWNAMIAALGQHGN---GARAIELYEQM 510
           D+ +W A++ A   HGN   G +A E+  +M
Sbjct: 546 DAATWGALLGASRIHGNMELGEQAAEMVFKM 576



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 170/373 (45%), Gaps = 41/373 (10%)

Query: 47  KPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNK 106
           + RE   N +I  Y +  ++   R LF+E+P P+I +   +I+ Y  + ++  AR +F+ 
Sbjct: 278 QKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDM 337

Query: 107 TPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEE 166
            P   RD+V + A+I  Y+ N     A+ +  +M+RD    +  TF   LSA A I   E
Sbjct: 338 MP--QRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALE 395

Query: 167 KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDEL 226
               Q+H  VV++G      V NAL+ +Y KC           +  A  VF  +  +D +
Sbjct: 396 LG-KQVHGQVVRTGYEKGCLVGNALVGMYCKC---------GCIDEAYDVFQGVQHKDIV 445

Query: 227 SWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYT 286
           SW TM+ GY ++ +   A    + M          + +G            ++ DE T  
Sbjct: 446 SWNTMLAGYARHGFGRQALTVFESM----------ITAG------------VKPDEITMV 483

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
            V+SAC+++GL   G + + + +  +   TP         ++ L  + G + EA+++   
Sbjct: 484 GVLSACSHTGLTDRGTE-YFHSMNKDYGITPNSKHYA--CMIDLLGRAGCLEEAQNLIRN 540

Query: 347 MP-ERDLVSWNAILSAYVSAG---LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG 402
           MP E D  +W A+L A    G   L ++A  +   M   N   + ++ +  A +G   + 
Sbjct: 541 MPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDV 600

Query: 403 LKLFSQMRLEGFK 415
            K+  +MR  G +
Sbjct: 601 SKMRLKMRQIGVQ 613



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 171/390 (43%), Gaps = 53/390 (13%)

Query: 296 GLFRLGKQVHA---YLLRTEAKPTPEFSLPVN---NALVTLYWKCGKVNEARDIFNQMPE 349
           G F L +Q+H+   ++ R    P P F  P        ++ + + G  + A  +F+ MP 
Sbjct: 3   GKFNL-RQLHSSIFHVQRPTNYPKPHFEDPHTVKCTKAISTHMRNGHCDLALCVFDAMPL 61

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
           R+ VS+NA++S Y+       A+ LF+ M  ++L SW +M++G A+N    +   LF  M
Sbjct: 62  RNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSM 121

Query: 410 ----------RLEGFKPCDY-----------------AFAGAITSCAGLGALENGRQLHA 442
                      L G+    +                 ++ G + +    G LE  R    
Sbjct: 122 PEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEAR---- 177

Query: 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
           +L  S  D  L + N L+  Y +  ++  A  +F+ +P  D +SWN MI+   Q G+ ++
Sbjct: 178 RLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQ 237

Query: 503 AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562
           A  L+E    E  + D  T+  ++ A    G++ E RR F+ M         E  Y   I
Sbjct: 238 ARRLFE----ESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEM-----PQKREMSYNVMI 288

Query: 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622
               +  +    +++ + +PF P+   W  +++G   +G+    +  A  LF +MP    
Sbjct: 289 AGYAQYKRMDMGRELFEEMPF-PNIGSWNIMISGYCQNGD----LAQARNLFDMMPQRDS 343

Query: 623 -TYVLLSNMYANLGRWDDAARVRKLMRDRG 651
            ++  +   YA  G +++A  +   M+  G
Sbjct: 344 VSWAAIIAGYAQNGLYEEAMNMLVEMKRDG 373


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 262/583 (44%), Positives = 374/583 (64%), Gaps = 13/583 (2%)

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR--- 269
           AR +F+   E D +SW  +M+GYV+   +  ARE  D M     V+WN ++SGY  R   
Sbjct: 56  ARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDM 115

Query: 270 -ELKMLMLRIQL-DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327
            E + L     + D FT+T+V+S  A +G+    ++V            PE +    NA+
Sbjct: 116 VEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVF--------DAMPERNAVSWNAM 167

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWT 387
           V  Y +   ++EA+++FN MP R++ SWN +L+ Y  AG+++EAK++F+ M +++ +SW 
Sbjct: 168 VAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWA 227

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447
            M++  +Q G  EE L+LF +M   G      AFA  +++CA + ALE G QLH +L+ +
Sbjct: 228 AMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRA 287

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
           GY      GNAL+ MY +CG +E A   F  M   D VSWN MIA   +HG G  A+E++
Sbjct: 288 GYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIF 347

Query: 508 EQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR 567
           + M      PD IT + VL+AC+H+GLV++G  YF +MH  +G+    +HY   IDLL R
Sbjct: 348 DMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGR 407

Query: 568 AGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627
           AG+ +EA D++  +PF+P + +W ALL   RIH N +LG  AAE++F+L P +AG YVLL
Sbjct: 408 AGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLL 467

Query: 628 SNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYL 687
           SN+YA+ G+W DA ++R +M +RGVKK PG SWIEV NKVH F   D  HPE + +Y +L
Sbjct: 468 SNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFL 527

Query: 688 EQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNL 747
           E L + M+K GYV  T  VLHD+E ++KE+ L  HSEKLAVA+G++ +P G  +RV+KNL
Sbjct: 528 EDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNL 587

Query: 748 RICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           R+CGDCHNAFK++S + GR I++RD  RFHHFR G CSCGDYW
Sbjct: 588 RVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 630



 Score =  165 bits (418), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 122/461 (26%), Positives = 208/461 (45%), Gaps = 74/461 (16%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
           N ++  Y ++ ++  AR LF+   + D+++   L++ Y     +  ARE+F++ P   RD
Sbjct: 41  NGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMP--GRD 98

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP--DNFTFTSVLSALAL--IVEEEKQC 169
            V +N M++ Y+   +   A  LF      D  P  D FT+T+V+S  A   ++EE ++ 
Sbjct: 99  VVSWNIMVSGYARRGDMVEARRLF------DAAPVRDVFTWTAVVSGYAQNGMLEEARR- 151

Query: 170 MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWT 229
                 V  +         NA+++ Y++         R +M  A+ +F+ MP R+  SW 
Sbjct: 152 ------VFDAMPERNAVSWNAMVAAYIQ---------RRMMDEAKELFNMMPCRNVASWN 196

Query: 230 TMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR--ELKMLMLRIQL------- 280
           TM+TGY +   L+ A+   D M +   V+W A+++ Y       + L L I++       
Sbjct: 197 TMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWV 256

Query: 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
           +   +  V+S CA+      G Q+H  L+R            V NAL+ +Y+KCG + +A
Sbjct: 257 NRSAFACVLSTCADIAALECGMQLHGRLIRAGYG----VGCFVGNALLAMYFKCGNMEDA 312

Query: 341 RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGE 400
           R+ F +M ERD+VSWN +++ Y   G                               +G+
Sbjct: 313 RNAFEEMEERDVVSWNTMIAGYARHG-------------------------------FGK 341

Query: 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNAL 459
           E L++F  MR    KP D    G + +C+  G +E G      + H  G  +       +
Sbjct: 342 EALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCM 401

Query: 460 ITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
           I +  R G +  A+ +   MP   DS  W A++ A   H N
Sbjct: 402 IDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRN 442



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 171/365 (46%), Gaps = 47/365 (12%)

Query: 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
           D  TY  +IS+ AN GL  L +  H + L       PE      N ++  Y + G+V EA
Sbjct: 5   DSVTYNVMISSHANHGLVSLAR--HYFDL------APEKDAVSWNGMLAAYVRNGRVEEA 56

Query: 341 RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGE 400
           R +FN   E D++SWNA++S YV  G + EA+ LF+ M  R+++SW +M+SG A+ G   
Sbjct: 57  RGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMV 116

Query: 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS--------- 451
           E  +LF    +       + +   ++  A  G LE  R++   +      S         
Sbjct: 117 EARRLFDAAPVRDV----FTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYI 172

Query: 452 ------------------SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
                             ++++ N ++T YA+ G++E A  VF+TMP  D+VSW AM+AA
Sbjct: 173 QRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAA 232

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR-YFETMHGPYGIP 552
             Q G     ++L+ +M + G   +R  F  VLS C     ++ G + +   +   YG+ 
Sbjct: 233 YSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV- 291

Query: 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
            G       + +  + G   +A++  + +  +     W  ++AG   HG    G +A E 
Sbjct: 292 -GCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVS-WNTMIAGYARHG---FGKEALE- 345

Query: 613 LFQLM 617
           +F +M
Sbjct: 346 IFDMM 350



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 5/120 (4%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           +H  +I +G+     + N L+ +Y K   +  AR  F+E+ + D+V+  T+IA Y+    
Sbjct: 280 LHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGF 339

Query: 97  VKLAREMFN--KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD---DVKPDNFT 151
            K A E+F+  +T     D +    ++ A SH+      I  F  M  D     KP+++T
Sbjct: 340 GKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYT 399


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 295/821 (35%), Positives = 451/821 (54%), Gaps = 70/821 (8%)

Query: 33  LARSVHAHMISSGFKPREHII-NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           L R + A  +  G   R  +  N +I  Y ++  +  AR LFD +P  D+ +  +++  Y
Sbjct: 109 LGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGY 168

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
             S  +  AR +F K P   R+ V +  MI+ Y    N   A ++F  M R+ + PD   
Sbjct: 169 CHSLQMVDARNLFEKMP--ERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSN 226

Query: 152 FTSVLSA---------------LALIVEEEKQCM---------QMHCTVVKSGTGLFTSV 187
           F S LSA               LAL    E+  +             +V+ +    F S+
Sbjct: 227 FASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESM 286

Query: 188 L--------------------NALISVY----VKCVS--SPFVSSRSLMGA---ARRVFD 218
           +                    +A I+VY    VK ++  +  ++  +  G    AR +F+
Sbjct: 287 IERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFE 346

Query: 219 EMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH--RELKMLML 276
           ++PE   +SW  ++TGY++N  ++ A+E  D M     ++W  +I+GY    R  + L L
Sbjct: 347 QIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGL 406

Query: 277 RIQLDEF-------TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
             +L          + TS+  AC+N      G QVH+  ++       +F+    NAL+T
Sbjct: 407 LQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGC----QFNSFACNALIT 462

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           +Y KC  +  AR +F++M  +D+VSWN+ L+A V   L+DEA++ F+ M  R+ +SWT +
Sbjct: 463 MYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTI 522

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           IS  A      E +  F  M  E   P        +  C  LGA + G+Q+H   +  G 
Sbjct: 523 ISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGM 582

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
           DS L   NALI+MY +CG  ++   +F+ M   D  +WN +I    QHG G  AI++Y+ 
Sbjct: 583 DSELIVANALISMYFKCGCADSRR-IFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQH 641

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
           M   G+LP+ +TF+ +L+AC+HAGLV EG ++F++M   YG+ P  +HYA  +DLL R G
Sbjct: 642 MESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTG 701

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629
               A+  I  +P +P   IW ALL  C+IH N ++G +AAE+LF++ P +AG YV+LSN
Sbjct: 702 DVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSN 761

Query: 630 MYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQ 689
           +Y++LG W + A VRK+M+ +GV KEPGCSW ++ +K+H F+  D  H + + +   LE+
Sbjct: 762 IYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEE 821

Query: 690 LVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRI 749
           L   ++  GYVPDT+FVLHD++ +QKE +L  HSEKLAVA+ L+  P G  +++LKNLRI
Sbjct: 822 LYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRI 881

Query: 750 CGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           CGDCH   KF+S V  R+I +RDG RFHHFR+G CSC D+W
Sbjct: 882 CGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  171 bits (433), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 125/422 (29%), Positives = 204/422 (48%), Gaps = 50/422 (11%)

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +G AR VFD MP RD ++W +M++ Y  N   DAAR+  D             ISG   R
Sbjct: 50  VGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDA------------ISGGNMR 97

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
              +L+                   SG  RLG+ + A   R       E +    NA+++
Sbjct: 98  TGAILL-------------------SGYGRLGRVLEA---RRVFDGMLERNTVAWNAMIS 135

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
            Y + G +  AR +F+ MP RD+ SWN++L+ Y  +  + +A++LFE M ERNL+SWTVM
Sbjct: 136 CYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVM 195

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           ISG  +     +   +F +M  EG  P    FA A+++  GLG L+    L    + +G+
Sbjct: 196 ISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGF 255

Query: 450 DSSLSAGNALITMYAR-CGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
           +  +  G A++ +Y+R   V++ A   F +M   +  +W+ MIAAL   G    AI +YE
Sbjct: 256 ERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYE 315

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568
           +   + I   R   +T L+ C   G + + R  FE +  P  +      +   I    + 
Sbjct: 316 RDPVKSI-ACRTALITGLAQC---GRIDDARILFEQIPEPIVVS-----WNALITGYMQN 366

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628
           G  +EAK++ D +PF+ +   W  ++AG   +G  +  +   ++L     H +G    LS
Sbjct: 367 GMVNEAKELFDKMPFRNTIS-WAGMIAGYAQNGRSEEALGLLQEL-----HRSGMLPSLS 420

Query: 629 NM 630
           ++
Sbjct: 421 SL 422



 Score =  162 bits (410), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 142/529 (26%), Positives = 223/529 (42%), Gaps = 108/529 (20%)

Query: 100 AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA- 158
           ARE+F+  P   RD + +N+MI+AY HN    AA +L+     D +   N    ++L + 
Sbjct: 53  AREVFDAMP--RRDIIAWNSMISAYCHNGMPDAARDLY-----DAISGGNMRTGAILLSG 105

Query: 159 ---LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARR 215
              L  ++E  +        V        T   NA+IS YV+            +  ARR
Sbjct: 106 YGRLGRVLEARR--------VFDGMLERNTVAWNAMISCYVQ---------NGDITMARR 148

Query: 216 VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE----- 270
           +FD MP RD  SW +M+TGY  +  +  AR   + M E   V+W  +ISGY   E     
Sbjct: 149 LFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKA 208

Query: 271 ----LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                KM    +  D+  + S +SA    G   + + +    L+T      E  + +  A
Sbjct: 209 WDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGF----ERDVVIGTA 264

Query: 327 LVTLY------------------------WKC--------GKVNEARDIFNQMPERDLVS 354
           ++ +Y                        W          G+++ A  ++ + P + +  
Sbjct: 265 ILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIAC 324

Query: 355 WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV-------------------------- 388
             A+++     G ID+A+ LFE + E  ++SW                            
Sbjct: 325 RTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNT 384

Query: 389 -----MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
                MI+G AQNG  EE L L  ++   G  P   +      +C+ + ALE G Q+H+ 
Sbjct: 385 ISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSL 444

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
            V  G   +  A NALITMY +C  +E A  VF+ M   D VSWN+ +AAL Q+     A
Sbjct: 445 AVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEA 504

Query: 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552
              ++ ML      D +++ T++SA  HA    E    F+TM   + +P
Sbjct: 505 RNTFDNMLSR----DDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELP 549


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 295/821 (35%), Positives = 451/821 (54%), Gaps = 70/821 (8%)

Query: 33  LARSVHAHMISSGFKPREHII-NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           L R + A  +  G   R  +  N +I  Y ++  +  AR LFD +P  D+ +  +++  Y
Sbjct: 109 LGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGY 168

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
             S  +  AR +F K P   R+ V +  MI+ Y    N   A ++F  M R+ + PD   
Sbjct: 169 CHSLQMVDARNLFEKMP--ERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSN 226

Query: 152 FTSVLSA---------------LALIVEEEKQCM---------QMHCTVVKSGTGLFTSV 187
           F S LSA               LAL    E+  +             +V+ +    F S+
Sbjct: 227 FASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESM 286

Query: 188 L--------------------NALISVY----VKCVS--SPFVSSRSLMGA---ARRVFD 218
           +                    +A I+VY    VK ++  +  ++  +  G    AR +F+
Sbjct: 287 IERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFE 346

Query: 219 EMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH--RELKMLML 276
           ++PE   +SW  ++TGY++N  ++ A+E  D M     ++W  +I+GY    R  + L L
Sbjct: 347 QIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGL 406

Query: 277 RIQLDEF-------TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
             +L          + TS+  AC+N      G QVH+  ++       +F+    NAL+T
Sbjct: 407 LQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGC----QFNSFACNALIT 462

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           +Y KC  +  AR +F++M  +D+VSWN+ L+A V   L+DEA++ F+ M  R+ +SWT +
Sbjct: 463 MYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTI 522

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           IS  A      E +  F  M  E   P        +  C  LGA + G+Q+H   +  G 
Sbjct: 523 ISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGM 582

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
           DS L   NALI+MY +CG  ++   +F+ M   D  +WN +I    QHG G  AI++Y+ 
Sbjct: 583 DSELIVANALISMYFKCGCADSRR-IFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQH 641

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
           M   G+LP+ +TF+ +L+AC+HAGLV EG ++F++M   YG+ P  +HYA  +DLL R G
Sbjct: 642 MESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTG 701

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629
               A+  I  +P +P   IW ALL  C+IH N ++G +AAE+LF++ P +AG YV+LSN
Sbjct: 702 DVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSN 761

Query: 630 MYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQ 689
           +Y++LG W + A VRK+M+ +GV KEPGCSW ++ +K+H F+  D  H + + +   LE+
Sbjct: 762 IYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEE 821

Query: 690 LVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRI 749
           L   ++  GYVPDT+FVLHD++ +QKE +L  HSEKLAVA+ L+  P G  +++LKNLRI
Sbjct: 822 LYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRI 881

Query: 750 CGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           CGDCH   KF+S V  R+I +RDG RFHHFR+G CSC D+W
Sbjct: 882 CGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  171 bits (433), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 125/422 (29%), Positives = 204/422 (48%), Gaps = 50/422 (11%)

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +G AR VFD MP RD ++W +M++ Y  N   DAAR+  D             ISG   R
Sbjct: 50  VGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDA------------ISGGNMR 97

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
              +L+                   SG  RLG+ + A   R       E +    NA+++
Sbjct: 98  TGAILL-------------------SGYGRLGRVLEA---RRVFDGMLERNTVAWNAMIS 135

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
            Y + G +  AR +F+ MP RD+ SWN++L+ Y  +  + +A++LFE M ERNL+SWTVM
Sbjct: 136 CYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVM 195

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           ISG  +     +   +F +M  EG  P    FA A+++  GLG L+    L    + +G+
Sbjct: 196 ISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGF 255

Query: 450 DSSLSAGNALITMYAR-CGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
           +  +  G A++ +Y+R   V++ A   F +M   +  +W+ MIAAL   G    AI +YE
Sbjct: 256 ERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYE 315

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568
           +   + I   R   +T L+ C   G + + R  FE +  P  +      +   I    + 
Sbjct: 316 RDPVKSI-ACRTALITGLAQC---GRIDDARILFEQIPEPIVVS-----WNALITGYMQN 366

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628
           G  +EAK++ D +PF+ +   W  ++AG   +G  +  +   ++L     H +G    LS
Sbjct: 367 GMVNEAKELFDKMPFRNTIS-WAGMIAGYAQNGRSEEALGLLQEL-----HRSGMLPSLS 420

Query: 629 NM 630
           ++
Sbjct: 421 SL 422



 Score =  162 bits (410), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 142/529 (26%), Positives = 223/529 (42%), Gaps = 108/529 (20%)

Query: 100 AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA- 158
           ARE+F+  P   RD + +N+MI+AY HN    AA +L+     D +   N    ++L + 
Sbjct: 53  AREVFDAMP--RRDIIAWNSMISAYCHNGMPDAARDLY-----DAISGGNMRTGAILLSG 105

Query: 159 ---LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARR 215
              L  ++E  +        V        T   NA+IS YV+            +  ARR
Sbjct: 106 YGRLGRVLEARR--------VFDGMLERNTVAWNAMISCYVQ---------NGDITMARR 148

Query: 216 VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE----- 270
           +FD MP RD  SW +M+TGY  +  +  AR   + M E   V+W  +ISGY   E     
Sbjct: 149 LFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKA 208

Query: 271 ----LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                KM    +  D+  + S +SA    G   + + +    L+T      E  + +  A
Sbjct: 209 WDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGF----ERDVVIGTA 264

Query: 327 LVTLY------------------------WKC--------GKVNEARDIFNQMPERDLVS 354
           ++ +Y                        W          G+++ A  ++ + P + +  
Sbjct: 265 ILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIAC 324

Query: 355 WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV-------------------------- 388
             A+++     G ID+A+ LFE + E  ++SW                            
Sbjct: 325 RTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNT 384

Query: 389 -----MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
                MI+G AQNG  EE L L  ++   G  P   +      +C+ + ALE G Q+H+ 
Sbjct: 385 ISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSL 444

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
            V  G   +  A NALITMY +C  +E A  VF+ M   D VSWN+ +AAL Q+     A
Sbjct: 445 AVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEA 504

Query: 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552
              ++ ML      D +++ T++SA  HA    E    F+TM   + +P
Sbjct: 505 RNTFDNMLSR----DDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELP 549


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 291/794 (36%), Positives = 449/794 (56%), Gaps = 60/794 (7%)

Query: 10  RTLANRYASQLQLCDPRNPITSS-LARSVHAHMISSGFKPR-EHIINRLIDIYCKSLKLV 67
           R L ++YAS L           + L  +VHA ++ +   P   +++N L+  Y  S  L 
Sbjct: 4   RQLCDQYASHLAAAAHAGGRQGAILTAAVHALILRTLPHPSPTYLLNTLLTAYASSGLLP 63

Query: 68  YARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHN 127
           +AR +FD +P  ++V   +L++A + +  V+    +F  T L  RD V YNA++  +S  
Sbjct: 64  HARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLF--TSLPQRDAVSYNALLAGFSRA 121

Query: 128 SNGHAAIELFRDMRRDD--VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFT 185
                A   +  + RD+  V+P   T + V+  +A  + +     Q+HC +++ G G + 
Sbjct: 122 GAHARAAGAYVALLRDEAGVRPSRITMSGVV-MVASALGDRALGRQVHCQILRLGFGAYA 180

Query: 186 SVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245
              + L+ +Y K    P       +G ARRVFDEM  ++ +   TM+TG ++   +  AR
Sbjct: 181 FTGSPLVDMYAKV--GP-------IGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEAR 231

Query: 246 EFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSG 296
              + + E   + W  +++G     L         +M    + +D++T+ S+++AC    
Sbjct: 232 ALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALA 291

Query: 297 LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWN 356
               GKQ+HAY+ RT      E ++ V +ALV +Y KC  V  A  +F +M       W 
Sbjct: 292 ALEEGKQIHAYITRT----CYEDNVFVGSALVDMYSKCRSVRLAEAVFRRM------MW- 340

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
                                   +N++SWT MI G  QNG GEE +++FS+M+ +G KP
Sbjct: 341 ------------------------KNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKP 376

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
            D+     I+SCA L +LE G Q H   + SG    ++  NAL+T+Y +CG +E A+ +F
Sbjct: 377 DDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLF 436

Query: 477 NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536
           + M   D VSW A++    Q G     I+L+E+ML +G+ PD +TF+ VLSAC+ +GLV 
Sbjct: 437 DEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVD 496

Query: 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           +GR YF +M   + I P +DHY   IDL  R+G   +A++ I  +P  P A  W  LL+ 
Sbjct: 497 KGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSA 556

Query: 597 CRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEP 656
           CR+ G++++G  AAE L +L P +  +YVLL +M+A+ G W+D A++R+ MRDR VKKEP
Sbjct: 557 CRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEP 616

Query: 657 GCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKE 716
           GCSWI+  NKVH+F  DD +HP ++ +Y+ L+ L  +M + GY PD   VLHD+   +K 
Sbjct: 617 GCSWIKYKNKVHIFSADDQSHPFSRTIYEKLQWLNSKMVEEGYKPDVSSVLHDVADAEKV 676

Query: 717 YALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRF 776
           + LS HSEKLA+AFGL+ +P    +R++KNLR+C DCHNA KF+SK+ GR+I+VRD  RF
Sbjct: 677 HMLSHHSEKLAIAFGLIFVPPEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRF 736

Query: 777 HHFRDGKCSCGDYW 790
           H F +G CSCGD+W
Sbjct: 737 HKFSNGICSCGDFW 750


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  537 bits (1383), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 278/747 (37%), Positives = 431/747 (57%), Gaps = 50/747 (6%)

Query: 45  GFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMF 104
           GF+    +   ++D++ +   + +A   F +I +P +  R +++A Y+ S  V  A E+F
Sbjct: 192 GFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELF 251

Query: 105 NKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE 164
              P   RD V +N M++A S +     A+ +  DM    V+ D+ T+TS L+A A +  
Sbjct: 252 ESMP--ERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKL-S 308

Query: 165 EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERD 224
                 Q+H  V++S   +   V +A++ +Y KC              ARRVF  + +R+
Sbjct: 309 SLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKC---------GCFKEARRVFSSLRDRN 359

Query: 225 ELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFT 284
            +SWT ++ G+++      + E  + M   +                      + +D+F 
Sbjct: 360 TVSWTVLIGGFLQYGCFSESLELFNQMRAEL----------------------MTVDQFA 397

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
             ++IS C+N     L +Q+H+  L    K     ++ ++N+L+++Y KCG +  A  IF
Sbjct: 398 LATIISGCSNRMDMCLARQLHSLSL----KSGHTRAVVISNSLISMYAKCGNLQNAESIF 453

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           + M ERD+VSW  +L+AY   G I +A+  F+ M  RN+++W  M+    Q+G  E+GLK
Sbjct: 454 SSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLK 513

Query: 405 LFSQMRLEGFKPCDY-AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
           ++S M  E     D+  +      CA +GA + G Q+    V  G     S  NA+ITMY
Sbjct: 514 MYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMY 573

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
           ++CG +  A  +F+ +   D VSWNAMI    QHG G +AIE+++ MLK+G  PD I+++
Sbjct: 574 SKCGRISEARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYV 633

Query: 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF 583
            VLS+C+H+GLV+EG+ YF+ +   + + PG +H++  +DLL RAG   EAK++ID +P 
Sbjct: 634 AVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPM 693

Query: 584 KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARV 643
           KP+A +W ALL+ C+ HGN +L   AA+ LF L    +G Y+LL+ +YA+ G+  D+A+V
Sbjct: 694 KPTAEVWGALLSACKTHGNNELAELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQV 753

Query: 644 RKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDT 703
           RKLMRD+G+KK PG SW+EV NKVHVF  +D +HP+  A+ + L++L+ ++ +LGYV   
Sbjct: 754 RKLMRDKGIKKNPGYSWMEVKNKVHVFKAEDVSHPQVIAIREKLDELMEKIAQLGYVR-- 811

Query: 704 KFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKV 763
                  ES + E     HSEKLAVAFG+M LP    + ++KNLRICGDCH   K +S V
Sbjct: 812 ------TESLRSEI---HHSEKLAVAFGIMNLPAWMPIHIMKNLRICGDCHTVIKLISTV 862

Query: 764 VGREIVVRDGKRFHHFRDGKCSCGDYW 790
            GRE V+RD  RFHHF+ G CSCGDYW
Sbjct: 863 TGREFVIRDAVRFHHFKGGSCSCGDYW 889



 Score =  202 bits (515), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 163/618 (26%), Positives = 269/618 (43%), Gaps = 97/618 (15%)

Query: 38  HAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF-DEIPQPDIVARTTLIAAYSASDN 96
           H  ++S G      + N L+  Y     L  AR L   +I +P+++    ++  Y+   +
Sbjct: 51  HGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGS 110

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPDNFTFTSV 155
           +  A E+F + P   RD   +N +++ Y  +     A+E F  MRR  D  P+ FTF   
Sbjct: 111 LSDAEELFGRMP--RRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCA 168

Query: 156 LSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARR 215
           + +   +   E   +Q+   + K G      V   ++ ++V+C +  F S +        
Sbjct: 169 MKSCGALGWHE-VALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQ-------- 219

Query: 216 VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH----RE- 270
            F ++         +M+ GY K+  +D A E  + M E   V+WN ++S        RE 
Sbjct: 220 -FSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREA 278

Query: 271 ----LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
               + M    ++LD  TYTS ++ACA       GKQ+HA ++R+     P     V +A
Sbjct: 279 LSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRS----LPCIDPYVASA 334

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           +V LY KCG   EAR +F+ + +R+ VSW  ++  ++  G   E+               
Sbjct: 335 MVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSES--------------- 379

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
                           L+LF+QMR E      +A A  I+ C+    +   RQLH+  + 
Sbjct: 380 ----------------LELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLK 423

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-------------------- 486
           SG+  ++   N+LI+MYA+CG ++ A  +F++M   D VS                    
Sbjct: 424 SGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREF 483

Query: 487 -----------WNAMIAALGQHGNGARAIELYEQMLKE-GILPDRITFLTVLSACNHAGL 534
                      WNAM+ A  QHG     +++Y  ML E  ++PD +T++T+   C   G 
Sbjct: 484 FDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGA 543

Query: 535 VKEGRRYFETMHG-PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEAL 593
            K G +   T H    G+          I +  + G+ SEA+ + D L  K     W A+
Sbjct: 544 NKLGDQI--TGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVS-WNAM 600

Query: 594 LAGCRIHGNIDLGIQAAE 611
           + G   HG   +G QA E
Sbjct: 601 ITGYSQHG---MGKQAIE 615



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 166/342 (48%), Gaps = 39/342 (11%)

Query: 27  NPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTT 86
           N +   LAR +H+  + SG      I N LI +Y K   L  A ++F  + + DIV+ T 
Sbjct: 407 NRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTG 466

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DV 145
           ++ AYS   N+  ARE F+   +  R+ + +NAM+ AY  +      ++++  M  + DV
Sbjct: 467 MLTAYSQVGNIGKAREFFD--GMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDV 524

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVS 205
            PD  T+ ++    A  +   K   Q+    VK G  L TSV+NA+I++Y KC       
Sbjct: 525 IPDWVTYVTLFRGCA-DMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKC------- 576

Query: 206 SRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265
               +  AR++FD +  +D +SW  M+TGY ++     A E  D                
Sbjct: 577 --GRISEARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFD---------------- 618

Query: 266 YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
                  ML    + D  +Y +V+S+C++SGL + GK  +  +L+ +   +P   L   +
Sbjct: 619 ------DMLKKGAKPDYISYVAVLSSCSHSGLVQEGK-FYFDMLKRDHNVSP--GLEHFS 669

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSAYVSAG 366
            +V L  + G + EA+++ ++MP +     W A+LSA  + G
Sbjct: 670 CMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHG 711



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 151/342 (44%), Gaps = 25/342 (7%)

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKP---------TPEFSLPVNNALVTLYWKCGKVN 338
           ++S    S +F     +HAYL    A P           E ++  +N ++  Y K G ++
Sbjct: 54  LVSVGLASAVFLQNTLLHAYL-SCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGSLS 112

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER-----NLLSWTVMISGL 393
           +A ++F +MP RD+ SWN ++S Y  +G   +A   F +MR       N  ++   +   
Sbjct: 113 DAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMKSC 172

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL 453
              G+ E  L+L   +   GF+       G +      GA++   +  +Q+       ++
Sbjct: 173 GALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIER----PTV 228

Query: 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE 513
              N+++  YA+   V+ A  +F +MP  D VSWN M++AL Q G    A+ +   M   
Sbjct: 229 FCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNR 288

Query: 514 GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY--ARFIDLLCRAGKF 571
           G+  D  T+ + L+AC     +  G++    +       P  D Y  +  ++L  + G F
Sbjct: 289 GVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSL---PCIDPYVASAMVELYAKCGCF 345

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
            EA+ V  SL  + +   W  L+ G   +G     ++   Q+
Sbjct: 346 KEARRVFSSLRDRNTVS-WTVLIGGFLQYGCFSESLELFNQM 386



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 106/268 (39%), Gaps = 40/268 (14%)

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSS-----------LSAG------------ 456
           A A A+ SC   GAL   R LH +LV  G  S+           LS G            
Sbjct: 30  ALADALRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGD 89

Query: 457 ---------NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
                    N ++  YA+ G +  A  +F  MP  D  SWN +++   Q G    A+E +
Sbjct: 90  ITEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESF 149

Query: 508 EQMLKEG-ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
             M + G  LP+  TF   + +C   G  +   +    +   +G     D     +D+  
Sbjct: 150 VSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLT-KFGFQGDPDVATGIVDMFV 208

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH-AGTYV 625
           R G    A      +  +P+     ++LAG         G+  A +LF+ MP     ++ 
Sbjct: 209 RCGAVDFASKQFSQIE-RPTVFCRNSMLAGYA----KSYGVDHALELFESMPERDVVSWN 263

Query: 626 LLSNMYANLGRWDDAARVRKLMRDRGVK 653
           ++ +  +  GR  +A  V   M +RGV+
Sbjct: 264 MMVSALSQSGRAREALSVAVDMHNRGVR 291


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 282/736 (38%), Positives = 431/736 (58%), Gaps = 50/736 (6%)

Query: 56  LIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTV 115
           L+D++ +   + +A  LF +I +P I  R +++A Y+    +  A E F    +  RD V
Sbjct: 179 LVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFED--MAERDVV 236

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
            +N MI A S +     A+ L  +M R  V+ D+ T+TS L+A A +        Q+H  
Sbjct: 237 SWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLF-SLGWGKQLHAK 295

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
           V++S   +   V +ALI +Y KC S            A+RVF+ + +R+ +SWT ++ G 
Sbjct: 296 VIRSLPQIDPYVASALIELYAKCGS---------FKEAKRVFNSLQDRNSVSWTVLIGGS 346

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
           ++ +    + E  + M   +                      + +D+F   ++IS C N 
Sbjct: 347 LQYECFSKSVELFNQMRAEL----------------------MAIDQFALATLISGCFNR 384

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
               LG+Q+H+  L    K     ++ V+N+L++LY KCG +  A  +F+ M ERD+VSW
Sbjct: 385 MDLCLGRQLHSLCL----KSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSW 440

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
            ++++AY   G I +A+  F+ M  RN ++W  M+    Q+G  E+GLK++S M  +   
Sbjct: 441 TSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDV 500

Query: 416 PCDY-AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
             D+  +      CA +GA + G Q+    V +G   ++S  NA ITMY++CG +  A  
Sbjct: 501 TPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQK 560

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
           +F+ +   D VSWNAMI    QHG G +A + ++ ML +G  PD I+++ VLS C+H+GL
Sbjct: 561 LFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGL 620

Query: 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
           V+EG+ YF+ M   +GI PG +H++  +DLL RAG  +EAKD+ID +P KP+A +W ALL
Sbjct: 621 VQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALL 680

Query: 595 AGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKK 654
           + C+IHGN +L   AA+ +F+L    +G+Y+LL+ +Y++ G+ DD+A+VRKLMRD+G+KK
Sbjct: 681 SACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKK 740

Query: 655 EPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQ 714
            PG SW+EV+NKVHVF  DD +HP+  A+   L++L+ ++  LGYV          ES +
Sbjct: 741 NPGYSWMEVENKVHVFKADDVSHPQVIAIRNKLDELMEKIAHLGYVR--------TESPR 792

Query: 715 KEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGK 774
            E     HSEKLAVAFG+M LP    + ++KNLRICGDCH   K +S V  RE V+RDG 
Sbjct: 793 SEI---HHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGV 849

Query: 775 RFHHFRDGKCSCGDYW 790
           RFHHF+ G CSCGDYW
Sbjct: 850 RFHHFKSGSCSCGDYW 865



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 178/658 (27%), Positives = 289/658 (43%), Gaps = 117/658 (17%)

Query: 17  ASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFD-E 75
           A  L+ C  R  +    AR++H  +++ G      + N L+  Y     L  AR L   +
Sbjct: 8   ADALRSCGSRGALAG--ARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRAD 65

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           I +P+++    ++  Y+   ++  A E+F++ P   RD   +N +++ Y         +E
Sbjct: 66  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMP--RRDVASWNTLMSGYFQARRFLDGLE 123

Query: 136 LFRDMRRD-DVKPDNFTFTSVLSALALIVEEEKQCMQMHC-TVVKSGTGLF--------T 185
            F  M R  D  P+ FTF  V+          K C  + C  +     GLF         
Sbjct: 124 TFVSMHRSGDSLPNAFTFCCVM----------KSCGALGCRELAPQLLGLFWKFDFWGDP 173

Query: 186 SVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245
            V  AL+ ++V+C    F S         R+F ++         +M+ GY K   +D A 
Sbjct: 174 DVETALVDMFVRCGYVDFAS---------RLFSQIERPTIFCRNSMLAGYAKLYGIDHAI 224

Query: 246 EFLDGMSENVGVAWNALI-----SGYVHRELKML--MLR--IQLDEFTYTSVISACANSG 296
           E+ + M+E   V+WN +I     SG V   L ++  M R  ++LD  TYTS ++ACA   
Sbjct: 225 EYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLF 284

Query: 297 LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWN 356
               GKQ+HA ++R+     P+    V +AL+ LY KCG   EA+ +FN + +R+ VSW 
Sbjct: 285 SLGWGKQLHAKVIRS----LPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSW- 339

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
                                         TV+I G  Q     + ++LF+QMR E    
Sbjct: 340 ------------------------------TVLIGGSLQYECFSKSVELFNQMRAELMAI 369

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
             +A A  I+ C     L  GRQLH+  + SG++ ++   N+LI++YA+CG ++ A  VF
Sbjct: 370 DQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVF 429

Query: 477 NTMPNVDSVS-------------------------------WNAMIAALGQHGNGARAIE 505
           ++M   D VS                               WNAM+ A  QHG     ++
Sbjct: 430 SSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLK 489

Query: 506 LYEQML-KEGILPDRITFLTVLSACNHAGLVKEGRRYF-ETMHGPYGIPPGEDHYARFID 563
           +Y  ML ++ + PD +T++T+   C   G  K G +    T+     +     + A  I 
Sbjct: 490 MYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAA--IT 547

Query: 564 LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621
           +  + G+ SEA+ + D L  K     W A++ G   HG   +G QAA+    ++   A
Sbjct: 548 MYSKCGRISEAQKLFDLLNGKDVVS-WNAMITGYSQHG---MGKQAAKTFDDMLSKGA 601



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 130/490 (26%), Positives = 223/490 (45%), Gaps = 35/490 (7%)

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H  +V  G      + N L+  Y  C         +L  A R +  ++ E + ++   M
Sbjct: 26  LHGRLVTVGLASAVFLQNTLLHAYFSC--------GALSDARRLLRADIKEPNVITHNIM 77

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH--RELKMLMLRIQL--------D 281
           M GY K   L  A E  D M      +WN L+SGY    R L  L   + +        +
Sbjct: 78  MNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPN 137

Query: 282 EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEAR 341
            FT+  V+ +C   G   L  Q+     + +    P+    V  ALV ++ +CG V+ A 
Sbjct: 138 AFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPD----VETALVDMFVRCGYVDFAS 193

Query: 342 DIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEE 401
            +F+Q+    +   N++L+ Y     ID A   FE M ER+++SW +MI+ L+Q+G   E
Sbjct: 194 RLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVRE 253

Query: 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALIT 461
            L L  +M  +G +     +  ++T+CA L +L  G+QLHA+++ S         +ALI 
Sbjct: 254 ALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIE 313

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           +YA+CG  + A  VFN++ + +SVSW  +I    Q+   ++++EL+ QM  E +  D+  
Sbjct: 314 LYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFA 373

Query: 522 FLTVLSACNHAGLVKEGRRY----FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577
             T++S C +   +  GR+      ++ H    +          I L  + G    A+ V
Sbjct: 374 LATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNS-----LISLYAKCGDLQNAEFV 428

Query: 578 IDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRW 637
             S+  +     W +++      GNI   I+A E    +   +A T+  +   Y   G  
Sbjct: 429 FSSMSERDIVS-WTSMITAYSQIGNI---IKAREFFDGMDTRNAITWNAMLGAYIQHGAE 484

Query: 638 DDAARVRKLM 647
           +D  ++   M
Sbjct: 485 EDGLKMYSAM 494



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 160/338 (47%), Gaps = 41/338 (12%)

Query: 27  NPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTT 86
           N +   L R +H+  + SG      + N LI +Y K   L  A  +F  + + DIV+ T+
Sbjct: 383 NRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTS 442

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM-RRDDV 145
           +I AYS   N+  ARE F+   +  R+ + +NAM+ AY  +      ++++  M  + DV
Sbjct: 443 MITAYSQIGNIIKAREFFD--GMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDV 500

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVS 205
            PD  T+ ++    A I    K   Q+    VK+G  L  SV NA I++Y KC       
Sbjct: 501 TPDWVTYVTLFRGCADI-GANKLGDQIIGHTVKAGLILNVSVANAAITMYSKC------- 552

Query: 206 SRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVAWNALIS 264
               +  A+++FD +  +D +SW  M+TGY ++     AA+ F D +S+           
Sbjct: 553 --GRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGA--------- 601

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
                         + D  +Y +V+S C++SGL + GK     + R     +P   L   
Sbjct: 602 --------------KPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHG-ISP--GLEHF 644

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSA 361
           + +V L  + G + EA+D+ ++MP +     W A+LSA
Sbjct: 645 SCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSA 682



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 88/228 (38%), Gaps = 37/228 (16%)

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA------- 472
           A A A+ SC   GAL   R LH +LV  G  S++   N L+  Y  CG +  A       
Sbjct: 6   ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRAD 65

Query: 473 ----NCV---------------------FNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
               N +                     F+ MP  D  SWN +++   Q       +E +
Sbjct: 66  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETF 125

Query: 508 EQMLKEG-ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
             M + G  LP+  TF  V+ +C   G  +E       +   +      D     +D+  
Sbjct: 126 VSMHRSGDSLPNAFTFCCVMKSCGALG-CRELAPQLLGLFWKFDFWGDPDVETALVDMFV 184

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAG-CRIHGNIDLGIQAAEQL 613
           R G    A  +   +  +P+     ++LAG  +++G ID  I+  E +
Sbjct: 185 RCGYVDFASRLFSQIE-RPTIFCRNSMLAGYAKLYG-IDHAIEYFEDM 230


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 281/736 (38%), Positives = 431/736 (58%), Gaps = 50/736 (6%)

Query: 56  LIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTV 115
           L+D++ +   + +A  LF +I +P I  R +++A Y+    +  A E F    +  RD V
Sbjct: 179 LVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFED--MAERDVV 236

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
            +N MI A S +     A+ L  +M R  V+ D+ T+TS L+A A +        Q+H  
Sbjct: 237 SWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLF-SLGWGKQLHAK 295

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
           V++S   +   V +ALI +Y KC S            A+RVF+ + +R+ +SWT ++ G 
Sbjct: 296 VIRSLPQIDPYVASALIELYAKCGS---------FKEAKRVFNSLQDRNSVSWTVLIGGS 346

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
           ++ +    + E  + M   +                      + +D+F   ++IS C N 
Sbjct: 347 LQYECFSKSVELFNQMRAEL----------------------MAIDQFALATLISGCFNR 384

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
               LG+Q+H+  L    K     ++ V+N+L++LY KCG +  A  +F+ M ERD+VSW
Sbjct: 385 MDLCLGRQLHSLCL----KSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSW 440

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
            ++++AY   G I +A+  F+ M  RN ++W  M+    Q+G  E+GLK++S M  +   
Sbjct: 441 TSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDV 500

Query: 416 PCDY-AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
             D+  +      CA +GA + G Q+    V +G   ++S  NA ITMY++CG +  A  
Sbjct: 501 TPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQK 560

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
           +F+ +   D VSWNAMI    QHG G +A + ++ ML +G  PD I+++ VLS C+H+GL
Sbjct: 561 LFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGL 620

Query: 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
           V+EG+ YF+ M   +GI PG +H++  +DLL RAG  +EAKD+ID +P KP+A +W ALL
Sbjct: 621 VQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALL 680

Query: 595 AGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKK 654
           + C+IHGN +L   AA+ +F+L    +G+Y+LL+ +Y++ G+ DD+A+VRKLMRD+G+KK
Sbjct: 681 SACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKK 740

Query: 655 EPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQ 714
            PG SW+EV+NKVHVF  DD +HP+  A+   +++L+ ++  LGYV          ES +
Sbjct: 741 NPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYVR--------TESPR 792

Query: 715 KEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGK 774
            E     HSEKLAVAFG+M LP    + ++KNLRICGDCH   K +S V  RE V+RDG 
Sbjct: 793 SEI---HHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGV 849

Query: 775 RFHHFRDGKCSCGDYW 790
           RFHHF+ G CSCGDYW
Sbjct: 850 RFHHFKSGSCSCGDYW 865



 Score =  208 bits (530), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 177/658 (26%), Positives = 288/658 (43%), Gaps = 117/658 (17%)

Query: 17  ASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFD-E 75
           A  L+ C  R  +    AR++H  +++ G      + N L+  Y     L  AR L   +
Sbjct: 8   ADALRSCGSRGALAG--ARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRAD 65

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           I +P+++    ++  Y+   ++  A E+F++ P   RD   +N +++ Y         +E
Sbjct: 66  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMP--RRDVASWNTLMSGYFQARRFLDGLE 123

Query: 136 LFRDMRRD-DVKPDNFTFTSVLSALALIVEEEKQCMQMHC-TVVKSGTGLF--------T 185
            F  M R  D  P+ FTF  V+          K C  + C  +     GLF         
Sbjct: 124 TFVSMHRSGDSLPNAFTFCCVM----------KSCGALGCRELAPQLLGLFWKFDFWGDP 173

Query: 186 SVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245
            V  AL+ ++V+C    F S         R+F ++         +M+ GY K   +D A 
Sbjct: 174 DVETALVDMFVRCGYVDFAS---------RLFSQIERPTIFCRNSMLAGYAKLYGIDHAI 224

Query: 246 EFLDGMSENVGVAWNALI-----SGYVHRELKML--MLR--IQLDEFTYTSVISACANSG 296
           E+ + M+E   V+WN +I     SG V   L ++  M R  ++LD  TYTS ++ACA   
Sbjct: 225 EYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLF 284

Query: 297 LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWN 356
               GKQ+HA ++R+     P+    V +AL+ LY KCG   EA+ +FN + +R+ VSW 
Sbjct: 285 SLGWGKQLHAKVIRS----LPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSW- 339

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
                                         TV+I G  Q     + ++LF+QMR E    
Sbjct: 340 ------------------------------TVLIGGSLQYECFSKSVELFNQMRAELMAI 369

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
             +A A  I+ C     L  GRQLH+  + SG++ ++   N+LI++YA+CG ++ A  VF
Sbjct: 370 DQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVF 429

Query: 477 NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML------------------------- 511
           ++M   D VSW +MI A  Q GN  +A E ++ M                          
Sbjct: 430 SSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLK 489

Query: 512 -------KEGILPDRITFLTVLSACNHAGLVKEGRRYF-ETMHGPYGIPPGEDHYARFID 563
                  ++ + PD +T++T+   C   G  K G +    T+     +     + A  I 
Sbjct: 490 MYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAA--IT 547

Query: 564 LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621
           +  + G+ SEA+ + D L  K     W A++ G   HG   +G QAA+    ++   A
Sbjct: 548 MYSKCGRISEAQKLFDLLNGKDVVS-WNAMITGYSQHG---MGKQAAKTFDDMLSKGA 601



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 130/490 (26%), Positives = 224/490 (45%), Gaps = 35/490 (7%)

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H  +V  G      + N L+  Y+ C         +L  A R +  ++ E + ++   M
Sbjct: 26  LHGRLVTVGLASAVFLQNTLLHAYLSC--------GALSDARRLLRADIKEPNVITHNIM 77

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH--RELKMLMLRIQL--------D 281
           M GY K   L  A E  D M      +WN L+SGY    R L  L   + +        +
Sbjct: 78  MNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPN 137

Query: 282 EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEAR 341
            FT+  V+ +C   G   L  Q+     + +    P+    V  ALV ++ +CG V+ A 
Sbjct: 138 AFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPD----VETALVDMFVRCGYVDFAS 193

Query: 342 DIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEE 401
            +F+Q+    +   N++L+ Y     ID A   FE M ER+++SW +MI+ L+Q+G   E
Sbjct: 194 RLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVRE 253

Query: 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALIT 461
            L L  +M  +G +     +  ++T+CA L +L  G+QLHA+++ S         +ALI 
Sbjct: 254 ALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIE 313

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           +YA+CG  + A  VFN++ + +SVSW  +I    Q+   ++++EL+ QM  E +  D+  
Sbjct: 314 LYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFA 373

Query: 522 FLTVLSACNHAGLVKEGRRY----FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577
             T++S C +   +  GR+      ++ H    +          I L  + G    A+ V
Sbjct: 374 LATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNS-----LISLYAKCGDLQNAEFV 428

Query: 578 IDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRW 637
             S+  +     W +++      GNI   I+A E    +   +A T+  +   Y   G  
Sbjct: 429 FSSMSERDIVS-WTSMITAYSQIGNI---IKAREFFDGMATRNAITWNAMLGAYIQHGAE 484

Query: 638 DDAARVRKLM 647
           +D  ++   M
Sbjct: 485 EDGLKMYSAM 494



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 160/338 (47%), Gaps = 41/338 (12%)

Query: 27  NPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTT 86
           N +   L R +H+  + SG      + N LI +Y K   L  A  +F  + + DIV+ T+
Sbjct: 383 NRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTS 442

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM-RRDDV 145
           +I AYS   N+  ARE F+   +  R+ + +NAM+ AY  +      ++++  M  + DV
Sbjct: 443 MITAYSQIGNIIKAREFFD--GMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDV 500

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVS 205
            PD  T+ ++    A I    K   Q+    VK+G  L  SV NA I++Y KC       
Sbjct: 501 TPDWVTYVTLFRGCADI-GANKLGDQIIGHTVKAGLILNVSVANAAITMYSKC------- 552

Query: 206 SRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVAWNALIS 264
               +  A+++FD +  +D +SW  M+TGY ++     AA+ F D +S+           
Sbjct: 553 --GRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGA--------- 601

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
                         + D  +Y +V+S C++SGL + GK     + R     +P   L   
Sbjct: 602 --------------KPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHG-ISP--GLEHF 644

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSA 361
           + +V L  + G + EA+D+ ++MP +     W A+LSA
Sbjct: 645 SCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSA 682



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 88/228 (38%), Gaps = 37/228 (16%)

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA------- 472
           A A A+ SC   GAL   R LH +LV  G  S++   N L+  Y  CG +  A       
Sbjct: 6   ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRAD 65

Query: 473 ----NCV---------------------FNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
               N +                     F+ MP  D  SWN +++   Q       +E +
Sbjct: 66  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETF 125

Query: 508 EQMLKEG-ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
             M + G  LP+  TF  V+ +C   G  +E       +   +      D     +D+  
Sbjct: 126 VSMHRSGDSLPNAFTFCCVMKSCGALG-CRELAPQLLGLFWKFDFWGDPDVETALVDMFV 184

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAG-CRIHGNIDLGIQAAEQL 613
           R G    A  +   +  +P+     ++LAG  +++G ID  I+  E +
Sbjct: 185 RCGYVDFASRLFSQIE-RPTIFCRNSMLAGYAKLYG-IDHAIEYFEDM 230


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 281/736 (38%), Positives = 431/736 (58%), Gaps = 50/736 (6%)

Query: 56  LIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTV 115
           L+D++ +   + +A  LF +I +P I  R +++A Y+    +  A E F    +  RD V
Sbjct: 169 LVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFED--MAERDVV 226

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
            +N MI A S +     A+ L  +M R  V+ D+ T+TS L+A A +        Q+H  
Sbjct: 227 SWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLF-SLGWGKQLHAK 285

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
           V++S   +   V +ALI +Y KC S            A+RVF+ + +R+ +SWT ++ G 
Sbjct: 286 VIRSLPQIDPYVASALIELYAKCGS---------FKEAKRVFNSLQDRNSVSWTVLIGGS 336

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
           ++ +    + E  + M   +                      + +D+F   ++IS C N 
Sbjct: 337 LQYECFSKSVELFNQMRAEL----------------------MAIDQFALATLISGCFNR 374

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
               LG+Q+H+  L    K     ++ V+N+L++LY KCG +  A  +F+ M ERD+VSW
Sbjct: 375 MDLCLGRQLHSLCL----KSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSW 430

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
            ++++AY   G I +A+  F+ M  RN ++W  M+    Q+G  E+GLK++S M  +   
Sbjct: 431 TSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDV 490

Query: 416 PCDY-AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
             D+  +      CA +GA + G Q+    V +G   ++S  NA ITMY++CG +  A  
Sbjct: 491 TPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQK 550

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
           +F+ +   D VSWNAMI    QHG G +A + ++ ML +G  PD I+++ VLS C+H+GL
Sbjct: 551 LFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGL 610

Query: 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
           V+EG+ YF+ M   +GI PG +H++  +DLL RAG  +EAKD+ID +P KP+A +W ALL
Sbjct: 611 VQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALL 670

Query: 595 AGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKK 654
           + C+IHGN +L   AA+ +F+L    +G+Y+LL+ +Y++ G+ DD+A+VRKLMRD+G+KK
Sbjct: 671 SACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKK 730

Query: 655 EPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQ 714
            PG SW+EV+NKVHVF  DD +HP+  A+   +++L+ ++  LGYV          ES +
Sbjct: 731 NPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYVR--------TESPR 782

Query: 715 KEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGK 774
            E     HSEKLAVAFG+M LP    + ++KNLRICGDCH   K +S V  RE V+RDG 
Sbjct: 783 SEI---HHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGV 839

Query: 775 RFHHFRDGKCSCGDYW 790
           RFHHF+ G CSCGDYW
Sbjct: 840 RFHHFKSGSCSCGDYW 855



 Score =  183 bits (465), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 170/656 (25%), Positives = 279/656 (42%), Gaps = 139/656 (21%)

Query: 17  ASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFD-E 75
           A  L+ C  R  +    AR++H  +++ G      + N L+  Y     L  AR L   +
Sbjct: 24  ADALRSCGSRGALAG--ARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRAD 81

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           I +P+++    ++  Y+   ++  A E+F++ P   RD   +N +++             
Sbjct: 82  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMP--RRDVASWNTLMS------------- 126

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLF--------TSV 187
                  D  +P      S +S  AL   E          +     GLF          V
Sbjct: 127 -------DTSRPAG----SWMSCGALGCRE----------LAPQLLGLFWKFDFWGDPDV 165

Query: 188 LNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREF 247
             AL+ ++V+C    F S         R+F ++         +M+ GY K   +D A E+
Sbjct: 166 ETALVDMFVRCGYVDFAS---------RLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEY 216

Query: 248 LDGMSENVGVAWNALI-----SGYVHRELKML--MLR--IQLDEFTYTSVISACANSGLF 298
            + M+E   V+WN +I     SG V   L ++  M R  ++LD  TYTS ++ACA     
Sbjct: 217 FEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSL 276

Query: 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAI 358
             GKQ+HA ++R+     P+    V +AL+ LY KCG   EA+ +FN + +R+ VSW   
Sbjct: 277 GWGKQLHAKVIRS----LPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSW--- 329

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
                                       TV+I G  Q     + ++LF+QMR E      
Sbjct: 330 ----------------------------TVLIGGSLQYECFSKSVELFNQMRAELMAIDQ 361

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478
           +A A  I+ C     L  GRQLH+  + SG++ ++   N+LI++YA+CG ++ A  VF++
Sbjct: 362 FALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSS 421

Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQML--------------------------- 511
           M   D VSW +MI A  Q GN  +A E ++ M                            
Sbjct: 422 MSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMY 481

Query: 512 -----KEGILPDRITFLTVLSACNHAGLVKEGRRYF-ETMHGPYGIPPGEDHYARFIDLL 565
                ++ + PD +T++T+   C   G  K G +    T+     +     + A  I + 
Sbjct: 482 SAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAA--ITMY 539

Query: 566 CRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621
            + G+ SEA+ + D L  K     W A++ G   HG   +G QAA+    ++   A
Sbjct: 540 SKCGRISEAQKLFDLLNGKDVVS-WNAMITGYSQHG---MGKQAAKTFDDMLSKGA 591



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 123/480 (25%), Positives = 212/480 (44%), Gaps = 41/480 (8%)

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H  +V  G      + N L+  Y+ C         +L  A R +  ++ E + ++   M
Sbjct: 42  LHGRLVTVGLASAVFLQNTLLHAYLSC--------GALSDARRLLRADIKEPNVITHNIM 93

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           M GY K   L  A E  D M      +WN L+S                D         +
Sbjct: 94  MNGYAKQGSLSDAEELFDRMPRRDVASWNTLMS----------------DTSRPAGSWMS 137

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           C   G   L  Q+     + +    P+    V  ALV ++ +CG V+ A  +F+Q+    
Sbjct: 138 CGALGCRELAPQLLGLFWKFDFWGDPD----VETALVDMFVRCGYVDFASRLFSQIERPT 193

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
           +   N++L+ Y     ID A   FE M ER+++SW +MI+ L+Q+G   E L L  +M  
Sbjct: 194 IFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHR 253

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
           +G +     +  ++T+CA L +L  G+QLHA+++ S         +ALI +YA+CG  + 
Sbjct: 254 KGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKE 313

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
           A  VFN++ + +SVSW  +I    Q+   ++++EL+ QM  E +  D+    T++S C +
Sbjct: 314 AKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFN 373

Query: 532 AGLVKEGRRY----FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSA 587
              +  GR+      ++ H    +          I L  + G    A+ V  S+  +   
Sbjct: 374 RMDLCLGRQLHSLCLKSGHNRAIVVSNS-----LISLYAKCGDLQNAEFVFSSMSERDIV 428

Query: 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647
             W +++      GNI   I+A E    +   +A T+  +   Y   G  +D  ++   M
Sbjct: 429 S-WTSMITAYSQIGNI---IKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAM 484



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 185/397 (46%), Gaps = 48/397 (12%)

Query: 27  NPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTT 86
           N +   L R +H+  + SG      + N LI +Y K   L  A  +F  + + DIV+ T+
Sbjct: 373 NRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTS 432

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM-RRDDV 145
           +I AYS   N+  ARE F+   +  R+ + +NAM+ AY  +      ++++  M  + DV
Sbjct: 433 MITAYSQIGNIIKAREFFDG--MATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDV 490

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVS 205
            PD  T+ ++    A I    K   Q+    VK+G  L  SV NA I++Y KC       
Sbjct: 491 TPDWVTYVTLFRGCADI-GANKLGDQIIGHTVKAGLILNVSVANAAITMYSKC------- 542

Query: 206 SRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVAWNALIS 264
               +  A+++FD +  +D +SW  M+TGY ++     AA+ F D +S+           
Sbjct: 543 --GRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGA--------- 591

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
                         + D  +Y +V+S C++SGL + GK     + R     +P   L   
Sbjct: 592 --------------KPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHG-ISP--GLEHF 634

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSAYVSAGLIDE-----AKSLFEAM 378
           + +V L  + G + EA+D+ ++MP +     W A+LSA    G  DE     AK +FE +
Sbjct: 635 SCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHG-NDELAELAAKHVFE-L 692

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
              +  S+ ++    +  G  ++  ++   MR +G K
Sbjct: 693 DSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIK 729



 Score = 47.8 bits (112), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 5/99 (5%)

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT- 478
           A A A+ SC   GAL   R LH +LV  G  S++   N L+  Y  CG +  A  +    
Sbjct: 22  ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRAD 81

Query: 479 --MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI 515
              PNV  ++ N M+    + G+ + A EL+++M +  +
Sbjct: 82  IKEPNV--ITHNIMMNGYAKQGSLSDAEELFDRMPRRDV 118


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  533 bits (1373), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 281/793 (35%), Positives = 444/793 (55%), Gaps = 62/793 (7%)

Query: 10  RTLANRYASQLQLCDPRNPITSSLARSVHAHMISS-GFKPREHIINRLIDIYCKSLKLVY 68
           R L+++YA+ L       P     A ++H  ++ +    P  H++N L+  Y K+ +   
Sbjct: 3   RPLSSQYAALLSAAARTEP---HAAGALHCVILRTLPHPPPTHLLNHLLTAYGKAGRHAR 59

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           AR +FD  P P++     L++  + +  +     +F    +  RDTV YNA+I  +S   
Sbjct: 60  ARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLF--ASMAQRDTVSYNAVIAGFSGGG 117

Query: 129 NGHAAIELFRDMRR--DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS 186
               A+ L+  + R    V+P   T ++++ A A  + +     Q HC +++ G G+   
Sbjct: 118 AHARAVRLYHTLLRAGSSVRPSRITMSAMVMA-ASALGDRALGRQFHCQILRLGFGVNAF 176

Query: 187 VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAARE 246
           V + L+ +Y K           L+G A+RVFDEM  ++ + + TM+TG ++   ++ AR 
Sbjct: 177 VGSPLVGMYAK---------MGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARR 227

Query: 247 FLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGL 297
             + M++   + W  +++G+    L         +M    I +D++T+ S+++AC     
Sbjct: 228 LFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSA 287

Query: 298 FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA 357
              GKQ+HAY++RT      + ++ V +ALV +Y KC                       
Sbjct: 288 LEQGKQIHAYIIRTHY----DDNVFVGSALVDMYSKCRS--------------------- 322

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
                     I  A++ F  M  +N++SWT +I G  QNG  EE +++FS+M+ +G  P 
Sbjct: 323 ----------IKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPD 372

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
           D+     I+SCA L +LE G Q H   + SG    ++  NAL+T+Y +CG +E A+ +F+
Sbjct: 373 DFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFD 432

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKE 537
            M   D VSW A++    Q G     I+L+E+ML + + PD +TF+ VLSAC+ AG V++
Sbjct: 433 EMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEK 492

Query: 538 GRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
           G  YF +M   +GI P +DHY   IDL  R+G+  EA++ I  +P  P A  W  LL+ C
Sbjct: 493 GCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSAC 552

Query: 598 RIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPG 657
           R+ G++++G  AAE L ++ P +  +YVLL +M+A  G W+  A++R+ MRDR VKKEPG
Sbjct: 553 RLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPG 612

Query: 658 CSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEY 717
           CSWI+  NKVH+F  DD +HP ++ +Y+ LE L  +M + GY PD   VLHD+    K +
Sbjct: 613 CSWIKYKNKVHIFSADDQSHPFSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVH 672

Query: 718 ALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFH 777
            +S HSEKLA+AFGLM +P    +R++KNLR+C DCHNA K +SK+ GR+I+VRD  RFH
Sbjct: 673 MVSHHSEKLAIAFGLMFVPHEMPIRIVKNLRVCVDCHNATKLISKITGRDILVRDAVRFH 732

Query: 778 HFRDGKCSCGDYW 790
            F +G CSCGD+W
Sbjct: 733 KFSNGVCSCGDFW 745


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 274/738 (37%), Positives = 434/738 (58%), Gaps = 54/738 (7%)

Query: 56  LIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTV 115
           L+D++ +   +  A  LF  I +P +  R +++A Y  +  V  A E+F+  P   RD V
Sbjct: 199 LVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMP--ERDVV 256

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
            +N M++A S +     A+++  DM+   V+ D+ T+TS L+A A +    +   Q+H  
Sbjct: 257 SWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARL-SSLRWGKQLHAQ 315

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
           V+++   +   V +AL+ +Y K               A+ VF+ + +R+ ++WT +++G+
Sbjct: 316 VIRNLPHIDPYVASALVELYAK---------SGCFKEAKGVFNSLHDRNNVAWTVLISGF 366

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
           ++      + E  + M   +                      + LD+F   ++IS C + 
Sbjct: 367 LQYGCFTESVELFNQMRAEL----------------------MTLDQFALATLISGCCSR 404

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
               LG+Q+H+  L++        ++ V+N+L+++Y KC  +  A  IF  M E+D+VSW
Sbjct: 405 MDLCLGRQLHSLCLKSGQIQ----AVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSW 460

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
            ++++AY   G + +A+  F+ M E+N+++W  M+    Q+G  E+GL+++  M  E + 
Sbjct: 461 TSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYV 520

Query: 416 PCDY-AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
             D+  +      CA LGA + G Q+  + V  G     S  NA+ITMY++CG +  A  
Sbjct: 521 RPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARK 580

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
           VF+ +   D VSWNAMI    QHG G +AIE+++ +LK G  PD I+++ VLS C+H+GL
Sbjct: 581 VFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGL 640

Query: 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
           V+EG+ YF+ M   + I PG +H++  +DLL RAG  +EAKD+ID +P KP+A +W ALL
Sbjct: 641 VQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALL 700

Query: 595 AGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKK 654
           + C+IHGN +L   AA+ +F+L    +G+Y+L++ +YA+ G+ DD+A++RKLMRD+G+KK
Sbjct: 701 SACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKK 760

Query: 655 EPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYV--PDTKFVLHDMES 712
            PG SW+EVDNKVHVF  DD +HP+  A+ K L++L+ ++ +LGYV    T+  +H    
Sbjct: 761 NPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVRTDSTRSEIH---- 816

Query: 713 DQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRD 772
                    HSEKLAVAFGLM LP    + ++KNLRICGDCH   K +S V GRE V+RD
Sbjct: 817 ---------HSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRD 867

Query: 773 GKRFHHFRDGKCSCGDYW 790
             RFHHF  G CSCGDYW
Sbjct: 868 AVRFHHFNGGSCSCGDYW 885



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 162/617 (26%), Positives = 263/617 (42%), Gaps = 95/617 (15%)

Query: 38  HAHMISSGFKPREHIINRLIDIYCKSLKLVYAR-TLFDEIPQPDIVARTTLIAAYSASDN 96
           H  +++ G      + N L+  Y     L  AR  L  +I  P+++    ++  Y+    
Sbjct: 47  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 106

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPDNFTFTSV 155
           +  A E+F + P   RD   +N +++ Y  +     ++E F  M R  D  P+ FT    
Sbjct: 107 LSDAVELFGRMP--ARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACA 164

Query: 156 LSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARR 215
           + +   +       +Q+   V K  +   + V  AL+ ++V+C +    S         R
Sbjct: 165 MKSCGAL-GWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLAS---------R 214

Query: 216 VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI-----SGYVHRE 270
           +F  + E       +M+ GYVK   +D A E  D M E   V+WN ++     SG V   
Sbjct: 215 LFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREA 274

Query: 271 LKMLM----LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
           L M++      ++LD  TYTS ++ACA     R GKQ+HA ++R      P     V +A
Sbjct: 275 LDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRN----LPHIDPYVASA 330

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           LV LY K G   EA+ +FN + +R+ V+W  ++S ++  G   E+               
Sbjct: 331 LVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTES--------------- 375

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
                           ++LF+QMR E      +A A  I+ C     L  GRQLH+  + 
Sbjct: 376 ----------------VELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLK 419

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
           SG   ++   N+LI+MYA+C  +++A  +F  M   D VSW +MI A  Q GN A+A E 
Sbjct: 420 SGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREF 479

Query: 507 YEQMLKEGIL--------------------------------PDRITFLTVLSACNHAGL 534
           ++ M ++ ++                                PD +T++T+   C   G 
Sbjct: 480 FDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGA 539

Query: 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
            K G +         G+          I +  + G+  EA+ V D L  K     W A++
Sbjct: 540 NKLGDQIIGRT-VKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVS-WNAMI 597

Query: 595 AGCRIHGNIDLGIQAAE 611
            G   HG   +G QA E
Sbjct: 598 TGYSQHG---MGKQAIE 611



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 132/540 (24%), Positives = 240/540 (44%), Gaps = 99/540 (18%)

Query: 9   IRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVY 68
           +R  +  Y S L  C   + +     + +HA +I +      ++ + L+++Y KS     
Sbjct: 286 VRLDSTTYTSSLTACARLSSL--RWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKE 343

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           A+ +F+ +   + VA T LI+ +       L    F ++                     
Sbjct: 344 AKGVFNSLHDRNNVAWTVLISGF-------LQYGCFTES--------------------- 375

Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM--QMHCTVVKSGTGLFTS 186
                +ELF  MR + +  D F   +++S           C+  Q+H   +KSG      
Sbjct: 376 -----VELFNQMRAELMTLDQFALATLISGCC---SRMDLCLGRQLHSLCLKSGQIQAVV 427

Query: 187 VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAARE 246
           V N+LIS+Y KC +         + +A  +F  M E+D +SWT+M+T Y +   +  ARE
Sbjct: 428 VSNSLISMYAKCDN---------LQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKARE 478

Query: 247 FLDGMSENVGVAWNALISGYVH---RELKMLMLRIQLDE-------FTYTSVISACANSG 296
           F DGMSE   + WNA++  Y+     E  + M ++ L E        TY ++   CA+ G
Sbjct: 479 FFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLG 538

Query: 297 LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWN 356
             +LG Q+   + RT  K        V NA++T+Y KCG++ EAR +F+ +  +D+VSWN
Sbjct: 539 ANKLGDQI---IGRT-VKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWN 594

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
           A+++ Y                               +Q+G G++ +++F  +   G KP
Sbjct: 595 AMITGY-------------------------------SQHGMGKQAIEIFDDILKRGAKP 623

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS--LSAGNALITMYARCGVVEAANC 474
              ++   ++ C+  G ++ G+  +  ++   ++ S  L   + ++ +  R G +  A  
Sbjct: 624 DYISYVAVLSGCSHSGLVQEGK-FYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKD 682

Query: 475 VFNTMPNVDSVS-WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533
           + + MP   +   W A+++A   HGN   A EL  + + E   PD  +++ +      AG
Sbjct: 683 LIDDMPMKPTAEVWGALLSACKIHGNNELA-ELAAKHVFELDSPDSGSYMLMAKIYADAG 741



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 113/413 (27%), Positives = 192/413 (46%), Gaps = 53/413 (12%)

Query: 9   IRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVY 68
           + TL +   S++ LC         L R +H+  + SG      + N LI +Y K   L  
Sbjct: 394 LATLISGCCSRMDLC---------LGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQS 444

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           A  +F  + + DIV+ T++I AYS   NV  ARE F+   +  ++ + +NAM+ AY  + 
Sbjct: 445 AEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFD--GMSEKNVITWNAMLGAYIQHG 502

Query: 129 NGHAAIELFRDMRRDD-VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSV 187
                + +++ M  ++ V+PD  T+ ++    A +    K   Q+    VK G  + TSV
Sbjct: 503 AEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADL-GANKLGDQIIGRTVKVGLIIDTSV 561

Query: 188 LNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREF 247
            NA+I++Y KC        R L   AR+VFD +  +D +SW  M+TGY ++     A E 
Sbjct: 562 ANAVITMYSKC-------GRIL--EARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEI 612

Query: 248 LDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY 307
            D                       +L    + D  +Y +V+S C++SGL + GK  +  
Sbjct: 613 FD----------------------DILKRGAKPDYISYVAVLSGCSHSGLVQEGK-FYFD 649

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSAYVSAG 366
           +++     +P   L   + +V L  + G + EA+D+ + MP +     W A+LSA    G
Sbjct: 650 MMKRAHNISP--GLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHG 707

Query: 367 LID----EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
             +     AK +FE +   +  S+ +M    A  G  ++  ++   MR +G K
Sbjct: 708 NNELAELAAKHVFE-LDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIK 759



 Score =  107 bits (266), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 151/329 (45%), Gaps = 45/329 (13%)

Query: 323 VNNALVTLYWKCGKVNEARDIF-NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
           + N L+  Y  CG +++AR +    +   ++++ N +L+ Y   G + +A  LF  M  R
Sbjct: 61  LQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPAR 120

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK-PCDYAFAGAITSCAGLGALENGRQL 440
           ++ SW  ++SG  Q+      L+ F  M   G   P  +  A A+ SC  LG      QL
Sbjct: 121 DVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQL 180

Query: 441 HA--QLVHSGYDSSLSAGNALITMYARCGVVEAAN------------C------------ 474
            A  Q   S  DS ++A  AL+ M+ RCG V+ A+            C            
Sbjct: 181 LAMVQKFDSQDDSEVAA--ALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTY 238

Query: 475 -------VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
                  +F++MP  D VSWN M++AL Q G    A+++   M  +G+  D  T+ + L+
Sbjct: 239 GVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLT 298

Query: 528 ACNHAGLVKEGRRYFETMHGPY--GIPPGEDHYAR-FIDLLCRAGKFSEAKDVIDSLPFK 584
           AC     ++ G++    +H      +P  + + A   ++L  ++G F EAK V +SL  +
Sbjct: 299 ACARLSSLRWGKQ----LHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDR 354

Query: 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
            +   W  L++G   +G     ++   Q+
Sbjct: 355 NNVA-WTVLISGFLQYGCFTESVELFNQM 382



 Score = 38.9 bits (89), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 101/268 (37%), Gaps = 40/268 (14%)

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA------- 472
           AFA A+ SC   GAL   R LH +LV  G  S++   N L+  Y  CG +  A       
Sbjct: 26  AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMD 85

Query: 473 ----NCV---------------------FNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
               N +                     F  MP  D  SWN +++   Q      ++E +
Sbjct: 86  IAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETF 145

Query: 508 EQMLKEG-ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
             M + G   P+  T    + +C   G      +    M   +      +  A  +D+  
Sbjct: 146 LSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLL-AMVQKFDSQDDSEVAAALVDMFV 204

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH-AGTYV 625
           R G    A  +   +  +P+     ++LAG         G+  A +LF  MP     ++ 
Sbjct: 205 RCGAVDLASRLFVRIK-EPTMFCRNSMLAGYV----KTYGVDHALELFDSMPERDVVSWN 259

Query: 626 LLSNMYANLGRWDDAARVRKLMRDRGVK 653
           ++ +  +  GR  +A  +   M+ +GV+
Sbjct: 260 MMVSALSQSGRVREALDMVVDMQSKGVR 287


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 274/738 (37%), Positives = 434/738 (58%), Gaps = 54/738 (7%)

Query: 56  LIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTV 115
           L+D++ +   +  A  LF  I +P +  R +++A Y  +  V  A E+F+  P   RD V
Sbjct: 179 LVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMP--ERDVV 236

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
            +N M++A S +     A+++  DM+   V+ D+ T+TS L+A A +    +   Q+H  
Sbjct: 237 SWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARL-SSLRWGKQLHAQ 295

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
           V+++   +   V +AL+ +Y K               A+ VF+ + +R+ ++WT +++G+
Sbjct: 296 VIRNLPHIDPYVASALVELYAK---------SGCFKEAKGVFNSLHDRNNVAWTVLISGF 346

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
           ++      + E  + M   +                      + LD+F   ++IS C + 
Sbjct: 347 LQYGCFTESVELFNQMRAEL----------------------MTLDQFALATLISGCCSR 384

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
               LG+Q+H+  L++        ++ V+N+L+++Y KC  +  A  IF  M E+D+VSW
Sbjct: 385 MDLCLGRQLHSLCLKSGQIQ----AVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSW 440

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
            ++++AY   G + +A+  F+ M E+N+++W  M+    Q+G  E+GL+++  M  E + 
Sbjct: 441 TSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYV 500

Query: 416 PCDY-AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
             D+  +      CA LGA + G Q+  + V  G     S  NA+ITMY++CG +  A  
Sbjct: 501 RPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARK 560

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
           VF+ +   D VSWNAMI    QHG G +AIE+++ +LK G  PD I+++ VLS C+H+GL
Sbjct: 561 VFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGL 620

Query: 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
           V+EG+ YF+ M   + I PG +H++  +DLL RAG  +EAKD+ID +P KP+A +W ALL
Sbjct: 621 VQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALL 680

Query: 595 AGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKK 654
           + C+IHGN +L   AA+ +F+L    +G+Y+L++ +YA+ G+ DD+A++RKLMRD+G+KK
Sbjct: 681 SACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKK 740

Query: 655 EPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYV--PDTKFVLHDMES 712
            PG SW+EVDNKVHVF  DD +HP+  A+ K L++L+ ++ +LGYV    T+  +H    
Sbjct: 741 NPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVRTDSTRSEIH---- 796

Query: 713 DQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRD 772
                    HSEKLAVAFGLM LP    + ++KNLRICGDCH   K +S V GRE V+RD
Sbjct: 797 ---------HSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRD 847

Query: 773 GKRFHHFRDGKCSCGDYW 790
             RFHHF  G CSCGDYW
Sbjct: 848 AVRFHHFNGGSCSCGDYW 865



 Score =  199 bits (506), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 162/617 (26%), Positives = 263/617 (42%), Gaps = 95/617 (15%)

Query: 38  HAHMISSGFKPREHIINRLIDIYCKSLKLVYAR-TLFDEIPQPDIVARTTLIAAYSASDN 96
           H  +++ G      + N L+  Y     L  AR  L  +I  P+++    ++  Y+    
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 86

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPDNFTFTSV 155
           +  A E+F + P   RD   +N +++ Y  +     ++E F  M R  D  P+ FT    
Sbjct: 87  LSDAVELFGRMP--ARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACA 144

Query: 156 LSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARR 215
           + +   +       +Q+   V K  +   + V  AL+ ++V+C +    S         R
Sbjct: 145 MKSCGAL-GWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLAS---------R 194

Query: 216 VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI-----SGYVHRE 270
           +F  + E       +M+ GYVK   +D A E  D M E   V+WN ++     SG V   
Sbjct: 195 LFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREA 254

Query: 271 LKMLM----LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
           L M++      ++LD  TYTS ++ACA     R GKQ+HA ++R      P     V +A
Sbjct: 255 LDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRN----LPHIDPYVASA 310

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           LV LY K G   EA+ +FN + +R+ V+W  ++S ++  G   E+               
Sbjct: 311 LVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTES--------------- 355

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
                           ++LF+QMR E      +A A  I+ C     L  GRQLH+  + 
Sbjct: 356 ----------------VELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLK 399

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
           SG   ++   N+LI+MYA+C  +++A  +F  M   D VSW +MI A  Q GN A+A E 
Sbjct: 400 SGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREF 459

Query: 507 YEQMLKEGIL--------------------------------PDRITFLTVLSACNHAGL 534
           ++ M ++ ++                                PD +T++T+   C   G 
Sbjct: 460 FDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGA 519

Query: 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
            K G +         G+          I +  + G+  EA+ V D L  K     W A++
Sbjct: 520 NKLGDQIIGRT-VKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVS-WNAMI 577

Query: 595 AGCRIHGNIDLGIQAAE 611
            G   HG   +G QA E
Sbjct: 578 TGYSQHG---MGKQAIE 591



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 132/540 (24%), Positives = 240/540 (44%), Gaps = 99/540 (18%)

Query: 9   IRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVY 68
           +R  +  Y S L  C   + +     + +HA +I +      ++ + L+++Y KS     
Sbjct: 266 VRLDSTTYTSSLTACARLSSL--RWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKE 323

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           A+ +F+ +   + VA T LI+ +       L    F ++                     
Sbjct: 324 AKGVFNSLHDRNNVAWTVLISGF-------LQYGCFTES--------------------- 355

Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM--QMHCTVVKSGTGLFTS 186
                +ELF  MR + +  D F   +++S           C+  Q+H   +KSG      
Sbjct: 356 -----VELFNQMRAELMTLDQFALATLISGCC---SRMDLCLGRQLHSLCLKSGQIQAVV 407

Query: 187 VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAARE 246
           V N+LIS+Y KC +         + +A  +F  M E+D +SWT+M+T Y +   +  ARE
Sbjct: 408 VSNSLISMYAKCDN---------LQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKARE 458

Query: 247 FLDGMSENVGVAWNALISGYVH---RELKMLMLRIQLDE-------FTYTSVISACANSG 296
           F DGMSE   + WNA++  Y+     E  + M ++ L E        TY ++   CA+ G
Sbjct: 459 FFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLG 518

Query: 297 LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWN 356
             +LG Q+   + RT  K        V NA++T+Y KCG++ EAR +F+ +  +D+VSWN
Sbjct: 519 ANKLGDQI---IGRT-VKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWN 574

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
           A+++ Y                               +Q+G G++ +++F  +   G KP
Sbjct: 575 AMITGY-------------------------------SQHGMGKQAIEIFDDILKRGAKP 603

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS--LSAGNALITMYARCGVVEAANC 474
              ++   ++ C+  G ++ G+  +  ++   ++ S  L   + ++ +  R G +  A  
Sbjct: 604 DYISYVAVLSGCSHSGLVQEGK-FYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKD 662

Query: 475 VFNTMPNVDSVS-WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533
           + + MP   +   W A+++A   HGN   A EL  + + E   PD  +++ +      AG
Sbjct: 663 LIDDMPMKPTAEVWGALLSACKIHGNNELA-ELAAKHVFELDSPDSGSYMLMAKIYADAG 721



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 113/413 (27%), Positives = 192/413 (46%), Gaps = 53/413 (12%)

Query: 9   IRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVY 68
           + TL +   S++ LC         L R +H+  + SG      + N LI +Y K   L  
Sbjct: 374 LATLISGCCSRMDLC---------LGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQS 424

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           A  +F  + + DIV+ T++I AYS   NV  ARE F+   +  ++ + +NAM+ AY  + 
Sbjct: 425 AEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFD--GMSEKNVITWNAMLGAYIQHG 482

Query: 129 NGHAAIELFRDMRRDD-VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSV 187
                + +++ M  ++ V+PD  T+ ++    A +    K   Q+    VK G  + TSV
Sbjct: 483 AEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADL-GANKLGDQIIGRTVKVGLIIDTSV 541

Query: 188 LNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREF 247
            NA+I++Y KC        R L   AR+VFD +  +D +SW  M+TGY ++     A E 
Sbjct: 542 ANAVITMYSKC-------GRIL--EARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEI 592

Query: 248 LDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY 307
            D                       +L    + D  +Y +V+S C++SGL + GK  +  
Sbjct: 593 FD----------------------DILKRGAKPDYISYVAVLSGCSHSGLVQEGK-FYFD 629

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSAYVSAG 366
           +++     +P   L   + +V L  + G + EA+D+ + MP +     W A+LSA    G
Sbjct: 630 MMKRAHNISP--GLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHG 687

Query: 367 LID----EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
             +     AK +FE +   +  S+ +M    A  G  ++  ++   MR +G K
Sbjct: 688 NNELAELAAKHVFE-LDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIK 739



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 151/329 (45%), Gaps = 45/329 (13%)

Query: 323 VNNALVTLYWKCGKVNEARDIF-NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
           + N L+  Y  CG +++AR +    +   ++++ N +L+ Y   G + +A  LF  M  R
Sbjct: 41  LQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPAR 100

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK-PCDYAFAGAITSCAGLGALENGRQL 440
           ++ SW  ++SG  Q+      L+ F  M   G   P  +  A A+ SC  LG      QL
Sbjct: 101 DVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQL 160

Query: 441 HA--QLVHSGYDSSLSAGNALITMYARCGVVEAAN------------C------------ 474
            A  Q   S  DS ++A  AL+ M+ RCG V+ A+            C            
Sbjct: 161 LAMVQKFDSQDDSEVAA--ALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTY 218

Query: 475 -------VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
                  +F++MP  D VSWN M++AL Q G    A+++   M  +G+  D  T+ + L+
Sbjct: 219 GVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLT 278

Query: 528 ACNHAGLVKEGRRYFETMHGPY--GIPPGEDHYAR-FIDLLCRAGKFSEAKDVIDSLPFK 584
           AC     ++ G++    +H      +P  + + A   ++L  ++G F EAK V +SL  +
Sbjct: 279 ACARLSSLRWGKQ----LHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDR 334

Query: 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
            +   W  L++G   +G     ++   Q+
Sbjct: 335 NNVA-WTVLISGFLQYGCFTESVELFNQM 362


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  530 bits (1365), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 277/760 (36%), Positives = 441/760 (58%), Gaps = 50/760 (6%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           SLA  +   +   G +    +   L+D++ +   +  A  LF  I +P I  R +++  Y
Sbjct: 155 SLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGY 214

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
             +  V  A E+F+  P   RD V +N M++A S +     A+++  DM+   V+ D+ T
Sbjct: 215 VKTYGVDHALELFDSMP--ERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTT 272

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           +TS L+A A +    +   Q+H  V+++   +   V +AL+ +Y KC             
Sbjct: 273 YTSSLTACARL-SSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKC---------GCFK 322

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A+ VF+ + +R+ ++WT ++ G++++     + E  + M   +                
Sbjct: 323 EAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAEL---------------- 366

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                 + LD+F   ++IS C +     LG+Q+H+  L++        ++ V+N+L+++Y
Sbjct: 367 ------MTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQ----AVVVSNSLISMY 416

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            KC  +  A  IF  M E+D+VSW ++++A+   G I +A+  F+ M  +N+++W  M+ 
Sbjct: 417 AKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLG 476

Query: 392 GLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
              Q+G  E+GL++++ M  E   +P    +      CA LGA + G Q+  + V  G  
Sbjct: 477 AYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLI 536

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
              S  NA+ITMY++CG +  A  VF+ +   D VSWNAMI    QHG G +AIE+++ +
Sbjct: 537 LDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDI 596

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
           LK G  PD I+++ VLS C+H+GLV+EG+ YF+ M   + I PG +H++  +DLL RAG 
Sbjct: 597 LKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGH 656

Query: 571 FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630
            +EAKD+ID +P KP+A +W ALL+ C+IHGN +L   AA+ +F+L    +G+Y+L++ +
Sbjct: 657 LTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKI 716

Query: 631 YANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQL 690
           YA+ G+ DD+A++RKLMRD+G+KK PG SW+EV+NKVHVF  DD +HP+  A+ K L++L
Sbjct: 717 YADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVNNKVHVFKADDVSHPQVIAIRKKLDEL 776

Query: 691 VLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRIC 750
           + ++ +LGYV          +S + E     HSEKLAVAFGLM LP    + ++KNLRIC
Sbjct: 777 MEKIARLGYVR--------TDSPRSEI---HHSEKLAVAFGLMSLPAWMPIHIMKNLRIC 825

Query: 751 GDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           GDCH   K +S V GRE V+RD  RFHHF  G CSCGDYW
Sbjct: 826 GDCHTVIKLISSVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 166/617 (26%), Positives = 266/617 (43%), Gaps = 95/617 (15%)

Query: 38  HAHMISSGFKPREHIINRLIDIYCKSLKLVYAR-TLFDEIPQPDIVARTTLIAAYSASDN 96
           H  +++ G      + N L+  Y     L  AR  L  +I  P+++    ++  Y     
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGR 86

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPDNFTFTSV 155
           +  A E+F + P   RD   +N +++ Y  +    A++E F  M R  D  P+ FTF   
Sbjct: 87  LSDAVELFGRMP--ARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYA 144

Query: 156 LSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARR 215
           + +   +  E    +Q+   V K G+   + V  AL+ ++V+C +    S         R
Sbjct: 145 MKSCGAL-GERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLAS---------R 194

Query: 216 VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI-----SGYVHRE 270
           +F  + E       +M+ GYVK   +D A E  D M E   V+WN ++     SG V   
Sbjct: 195 LFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREA 254

Query: 271 LKMLM----LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
           L M++      ++LD  TYTS ++ACA     R GKQ+HA ++R      P     V +A
Sbjct: 255 LDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRN----LPCIDPYVASA 310

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           LV LY KCG   EA+ +FN + +R+ V+W  +++ ++  G   E+               
Sbjct: 311 LVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTES--------------- 355

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
                           ++LF+QMR E      +A A  I+ C     L  GRQLH+  + 
Sbjct: 356 ----------------VELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLK 399

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
           SG   ++   N+LI+MYA+C  +++A  +F  M   D VSW +MI A  Q GN A+A E 
Sbjct: 400 SGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREF 459

Query: 507 YEQMLKEGIL--------------------------------PDRITFLTVLSACNHAGL 534
           ++ M  + ++                                PD +T++T+   C   G 
Sbjct: 460 FDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGA 519

Query: 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
            K G +         G+          I +  + G+  EA+ V D L  K     W A++
Sbjct: 520 NKLGDQIIGRT-VKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVS-WNAMI 577

Query: 595 AGCRIHGNIDLGIQAAE 611
            G   HG   +G QA E
Sbjct: 578 TGYSQHG---MGKQAIE 591



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 191/413 (46%), Gaps = 53/413 (12%)

Query: 9   IRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVY 68
           + TL +   S++ LC         L R +H+  + SG      + N LI +Y K   L  
Sbjct: 374 LATLISGCCSRMDLC---------LGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQS 424

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           A ++F  + + DIV+ T++I A+S   N+  ARE F+   +  ++ + +NAM+ AY  + 
Sbjct: 425 AESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFD--GMSTKNVITWNAMLGAYIQHG 482

Query: 129 NGHAAIELFRDMRRD-DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSV 187
                + ++  M  + DV+PD  T+ ++    A +    K   Q+    VK G  L TSV
Sbjct: 483 AEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADL-GANKLGDQIIGRTVKVGLILDTSV 541

Query: 188 LNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREF 247
            NA+I++Y KC        R L   AR+VFD +  +D +SW  M+TGY ++     A E 
Sbjct: 542 ANAVITMYSKC-------GRIL--EARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEI 592

Query: 248 LDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY 307
            D                       +L    + D  +Y +V+S C++SGL + GK     
Sbjct: 593 FD----------------------DILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDM 630

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSAYVSAG 366
           + R     +P   L   + +V L  + G + EA+D+ ++MP +     W A+LSA    G
Sbjct: 631 MKRVH-NISP--GLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHG 687

Query: 367 LID----EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
             +     AK +FE +   +  S+ +M    A  G  ++  ++   MR +G K
Sbjct: 688 NNELAELAAKHVFE-LDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIK 739



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 144/325 (44%), Gaps = 37/325 (11%)

Query: 323 VNNALVTLYWKCGKVNEARDIF-NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
           + N L+  Y  CG + +AR +    +   ++++ N +L+ YV  G + +A  LF  M  R
Sbjct: 41  LQNTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPAR 100

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG-FKPCDYAFAGAITSCAGLGALENGRQL 440
           ++ SW  ++SG  Q+      L+ F  M   G   P  + FA A+ SC  LG      QL
Sbjct: 101 DVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQL 160

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAAN------------C-------------- 474
              +   G         AL+ M+ RCG V+ A+            C              
Sbjct: 161 LGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGV 220

Query: 475 -----VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
                +F++MP  D VSWN M++AL Q G    A+++   M  +G+  D  T+ + L+AC
Sbjct: 221 DHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTAC 280

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYAR-FIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
                ++ G++    +     +P  + + A   ++L  + G F EAK V +SL  + +  
Sbjct: 281 ARLSSLRWGKQLHAQV--IRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVA 338

Query: 589 IWEALLAGCRIHGNIDLGIQAAEQL 613
            W  L+AG   HG     ++   Q+
Sbjct: 339 -WTVLIAGFLQHGCFTESVELFNQM 362



 Score = 42.4 bits (98), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 104/269 (38%), Gaps = 42/269 (15%)

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA------- 472
           AFA A+ SC   GAL   R LH +LV  G  S++   N L+  Y  CG +  A       
Sbjct: 6   AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTD 65

Query: 473 ----NCV---------------------FNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
               N +                     F  MP  D  SWN +++   Q      ++E +
Sbjct: 66  IAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESF 125

Query: 508 EQMLKEG-ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
             M + G   P+  TF   + +C   G      +    M   +G     D  A  +D+  
Sbjct: 126 VSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLL-GMVQKFGSQDDSDVAAALVDMFV 184

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAG-CRIHGNIDLGIQAAEQLFQLMPHH-AGTY 624
           R G    A  +   +  +P+     ++L G  + +     G+  A +LF  MP     ++
Sbjct: 185 RCGTVDLASRLFVRIK-EPTIFCRNSMLVGYVKTY-----GVDHALELFDSMPERDVVSW 238

Query: 625 VLLSNMYANLGRWDDAARVRKLMRDRGVK 653
            ++ +  +  GR  +A  +   M+ +GV+
Sbjct: 239 NMMVSALSQSGRVREALDMVVDMQSKGVR 267


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 279/761 (36%), Positives = 426/761 (55%), Gaps = 73/761 (9%)

Query: 34   ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVAR----TTLIA 89
            A  ++  M S G KP       L+     S      + + ++I +  I +       L+ 
Sbjct: 470  AMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMN 529

Query: 90   AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
             Y    ++  A+ +F  T  + RD + +N+MI  ++ + +  AA +LF +M+++ ++PD 
Sbjct: 530  MYRRCGSIMEAQNVFEGT--RARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDK 587

Query: 150  FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
             TF SVL       E  +   Q+H  +++SG  L  ++ NALI++Y++C S         
Sbjct: 588  ITFASVLVGCK-NPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGS--------- 637

Query: 210  MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
            +  A  VF  +  R+ +SWT M+ G+        A E            W     G+  +
Sbjct: 638  LQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELF----------WQMQNDGF--K 685

Query: 270  ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
             +K           T++S++ AC +S     GK+V A++L                    
Sbjct: 686  PVKS----------TFSSILKACMSSACLDEGKKVIAHIL-------------------- 715

Query: 330  LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
                           N   E D    NA++SAY  +G + +A+ +F+ M  R+++SW  M
Sbjct: 716  ---------------NSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKM 760

Query: 390  ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
            I+G AQNG G   L+   QM+ +G     ++F   + +C+   ALE G+++HA++V    
Sbjct: 761  IAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKM 820

Query: 450  DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
               +  G ALI+MYA+CG +E A  VF+     + V+WNAMI A  QHG  ++A++ +  
Sbjct: 821  QGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNC 880

Query: 510  MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
            M KEGI PD  TF ++LSACNH+GLV EG R F ++   +G+ P  +HY   + LL RAG
Sbjct: 881  MDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAG 940

Query: 570  KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629
            +F EA+ +I+ +PF P A +WE LL  CRIHGN+ L   AA    +L   +   YVLLSN
Sbjct: 941  RFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSN 1000

Query: 630  MYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQ 689
            +YA  GRWDD A++R++M  RG++KEPG SWIEVDN +H F+  D +HPE   +Y+ L++
Sbjct: 1001 VYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKR 1060

Query: 690  LVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRI 749
            L LEM + GY PDT++VLH+++ + +E +L THSE+LA+A+GL+K P G  +R+ KNLRI
Sbjct: 1061 LSLEMERAGYSPDTQYVLHNLDKEHQETSLCTHSERLAIAYGLLKTPPGTPIRIFKNLRI 1120

Query: 750  CGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            CGDCH A KF+SK+VGREI+ RD  RFH F++GKCSC D+W
Sbjct: 1121 CGDCHTASKFISKLVGREIIARDSNRFHTFKNGKCSCEDFW 1161



 Score =  212 bits (540), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 159/585 (27%), Positives = 260/585 (44%), Gaps = 87/585 (14%)

Query: 39  AHMISSGFKPREHIINRLIDIYCKSLKLVYARTL----FDEIPQPDIVARTTLIAAYSAS 94
             M S G  P +     L+D +     L   + +     +E    DI   T L   +   
Sbjct: 273 GQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRC 332

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
            +V  A++         RD V YNA+I A + + +   A E +  MR D V  +  T+ S
Sbjct: 333 GDVAGAKQALE--AFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLS 390

Query: 155 VLSAL----ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           VL+A     AL   E      +H  + + G      + N+LIS+Y +C   P        
Sbjct: 391 VLNACSTSKALGAGE-----LIHSHISEVGHSSDVQIGNSLISMYARCGDLP-------- 437

Query: 211 GAARRVFDEMPERDELSWTTMMTGYV-KNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
             AR +F+ MP+RD +SW  ++ GY  + D  +A + +    SE V              
Sbjct: 438 -RARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGV-------------- 482

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
                    +    T+  ++SAC NS  +  GK +H  +LR+  K     +    NAL+ 
Sbjct: 483 ---------KPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLA----NALMN 529

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           +Y +CG + EA+++F     RD++SWN++++                             
Sbjct: 530 MYRRCGSIMEAQNVFEGTRARDIISWNSMIA----------------------------- 560

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
             G AQ+G  E   KLF +M+ EG +P    FA  +  C    ALE GRQ+H  ++ SG 
Sbjct: 561 --GHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGL 618

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
              ++ GNALI MY RCG ++ A  VF+++ + + +SW AMI      G   +A EL+ Q
Sbjct: 619 QLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQ 678

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYF-ETMHGPYGIPPGEDHYARFIDLLCRA 568
           M  +G  P + TF ++L AC  +  + EG++     ++  Y +  G  +    I    ++
Sbjct: 679 MQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGN--ALISAYSKS 736

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
           G  ++A+ V D +P +     W  ++AG   +G     +Q A Q+
Sbjct: 737 GSMTDARKVFDKMPNRDIMS-WNKMIAGYAQNGLGGTALQFAYQM 780



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 154/585 (26%), Positives = 264/585 (45%), Gaps = 84/585 (14%)

Query: 42  ISSGFKPREHIINR-----LIDIYCKSLKLVYARTLFDEIPQ----PDIVARTTLIAAYS 92
           +S+ ++PR    NR     L+    +   L  A+ +  ++ +    PDI     LI  Y 
Sbjct: 69  LSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYV 128

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
              +V  A ++F K P   RD + +N++I+ Y+       A +LF +M+     P   T+
Sbjct: 129 KCRSVSDAHQVFLKMP--RRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITY 186

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            S+L+A     E E    ++H  ++++G      V N+L+++Y KC   P         +
Sbjct: 187 ISILTACCSPAELEYG-KKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLP---------S 236

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           AR+VF  +  RD +S+ TM+  Y +  Y++        MS                    
Sbjct: 237 ARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSE------------------ 278

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                I  D+ TY +++ A     +   GK++H    +          + V  AL T++ 
Sbjct: 279 ----GIPPDKVTYINLLDAFTTPSMLDEGKRIH----KLAVNEGLNSDIRVGTALATMFV 330

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           +CG V  A+       +RD+V +NA+++A                               
Sbjct: 331 RCGDVAGAKQALEAFADRDVVVYNALIAA------------------------------- 359

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
           LAQ+G+ EE  + + QMR +G       +   + +C+   AL  G  +H+ +   G+ S 
Sbjct: 360 LAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSD 419

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           +  GN+LI+MYARCG +  A  +FNTMP  D +SWNA+IA   +  +   A++LY+QM  
Sbjct: 420 VQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQS 479

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
           EG+ P R+TFL +LSAC ++    +G+   E +    GI          +++  R G   
Sbjct: 480 EGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSIM 538

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           EA++V +    +     W +++AG   HG+     +AA +LF  M
Sbjct: 539 EAQNVFEGTRARDIIS-WNSMIAGHAQHGS----YEAAYKLFLEM 578



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 148/562 (26%), Positives = 262/562 (46%), Gaps = 79/562 (14%)

Query: 41  MISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP----QPDIVARTTLIAAYSASDN 96
           M ++GF P +     ++   C   +L Y + +  +I     Q D   + +L+  Y   ++
Sbjct: 174 MQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCED 233

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
           +  AR++F  + +  RD V YN M+  Y+  +     I LF  M  + + PD  T+ ++L
Sbjct: 234 LPSARQVF--SGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLL 291

Query: 157 SALAL--IVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
            A     +++E K   ++H   V  G      V  AL +++V+C           +  A+
Sbjct: 292 DAFTTPSMLDEGK---RIHKLAVNEGLNSDIRVGTALATMFVRCGD---------VAGAK 339

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
           +  +   +RD + +  ++    ++ + + A E                   Y  R   ++
Sbjct: 340 QALEAFADRDVVVYNALIAALAQHGHYEEAFE-----------------QYYQMRSDGVV 382

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
           M R      TY SV++AC+ S     G+ +H+++  +E   + +  + + N+L+++Y +C
Sbjct: 383 MNRT-----TYLSVLNACSTSKALGAGELIHSHI--SEVGHSSD--VQIGNSLISMYARC 433

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
           G +  AR++FN MP+RDL+SWNAI++ Y              A RE              
Sbjct: 434 GDLPRARELFNTMPKRDLISWNAIIAGY--------------ARREDR------------ 467

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
                 E +KL+ QM+ EG KP    F   +++C    A  +G+ +H  ++ SG  S+  
Sbjct: 468 -----GEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGH 522

Query: 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
             NAL+ MY RCG +  A  VF      D +SWN+MIA   QHG+   A +L+ +M KEG
Sbjct: 523 LANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEG 582

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
           + PD+ITF +VL  C +   ++ GR+    +    G+    +     I++  R G   +A
Sbjct: 583 LEPDKITFASVLVGCKNPEALELGRQ-IHMLIIESGLQLDVNLGNALINMYIRCGSLQDA 641

Query: 575 KDVIDSLPFKPSAPIWEALLAG 596
            +V  SL  + +   W A++ G
Sbjct: 642 YEVFHSLRHR-NVMSWTAMIGG 662



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 154/363 (42%), Gaps = 78/363 (21%)

Query: 3   MKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCK 62
           M+N D  + + + ++S L+ C     +     + V AH+++SG++    + N LI  Y K
Sbjct: 679 MQN-DGFKPVKSTFSSILKACMSSACLDE--GKKVIAHILNSGYELDTGVGNALISAYSK 735

Query: 63  SLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
           S  +  AR +FD++P  DI++                                 +N MI 
Sbjct: 736 SGSMTDARKVFDKMPNRDIMS---------------------------------WNKMIA 762

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALI--VEEEKQCMQMHCTVVKSG 180
            Y+ N  G  A++    M+   V  + F+F S+L+A +    +EE K   ++H  +VK  
Sbjct: 763 GYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGK---RVHAEIVKRK 819

Query: 181 TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY 240
                 V  ALIS+Y KC S         +  A+ VFD   E++ ++W  M+  Y ++  
Sbjct: 820 MQGDVRVGAALISMYAKCGS---------LEEAQEVFDNFTEKNVVTWNAMINAYAQHGL 870

Query: 241 LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRL 300
              A +F + M +                        I+ D  T+TS++SAC +SGL   
Sbjct: 871 ASKALDFFNCMDKE----------------------GIKPDGSTFTSILSACNHSGLVME 908

Query: 301 GKQVHAYLLRTEA-KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAI 358
           G ++ + L       PT E        LV L  + G+  EA  + NQMP   D   W  +
Sbjct: 909 GNRIFSSLESQHGLSPTIEHY----GCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETL 964

Query: 359 LSA 361
           L A
Sbjct: 965 LGA 967


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 279/736 (37%), Positives = 423/736 (57%), Gaps = 50/736 (6%)

Query: 56  LIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTV 115
           L+D+  +   + +A   F  I  P I+ R +++  Y+ S  V  A E+F   P   RD V
Sbjct: 200 LVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMP--ERDVV 257

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
            +N +I+A S +     A+++  DM    V+PD+ T+TS L+A A +   E    Q+H  
Sbjct: 258 SWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWG-KQLHVQ 316

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
           V+++   +   V +A++ +Y KC              A+RVF  + +R+ +SWT ++ G+
Sbjct: 317 VIRNLPHIDPYVASAMVELYAKC---------GCFKEAKRVFSSLRDRNSVSWTVLIGGF 367

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
           ++      + E  + M   +                      + +D+F   ++IS C N+
Sbjct: 368 LQYGCFSESVELFNQMRAEL----------------------MAVDQFALATLISGCCNT 405

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
               LG Q+H+  L    K     ++ V+N+L+++Y KCG +  A  IFN M ERD+VSW
Sbjct: 406 MDICLGSQLHSLCL----KSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSW 461

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
             +++AY   G I +A+  F+ M  RN+++W  M+    Q+G  E+GLK++S M  E   
Sbjct: 462 TGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDV 521

Query: 416 PCDY-AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
             D+  +      CA +GA + G Q+    V  G     S  NA+ITMY++CG +  A  
Sbjct: 522 IPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARK 581

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
            F+ +   D VSWNAMI    QHG G +AIE+++ +L +G  PD I+++ VLS C+H+GL
Sbjct: 582 AFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGL 641

Query: 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
           V+EG+ YF+ M   + I PG +H++  +DLL RAG   EAK++ID +P KP+A +W ALL
Sbjct: 642 VEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALL 701

Query: 595 AGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKK 654
           + C+ HGN DL   AA+ LF L    +G Y+LL+ MYA+ G+ DD+A+VRKLMRD+G+KK
Sbjct: 702 SACKTHGNNDLAELAAKHLFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIKK 761

Query: 655 EPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQ 714
            PG SW+EV+N+VHVF  +D +HP+  A+ + L++L+ ++  LGYV          ES +
Sbjct: 762 SPGYSWMEVNNRVHVFKAEDVSHPQVIAIREKLDELMEKIAHLGYVR--------TESPR 813

Query: 715 KEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGK 774
            E     HSEKLAVAFG+M LP    + ++KNLRIC DCH   K +S V  RE V+RDG 
Sbjct: 814 SEI---HHSEKLAVAFGIMSLPAWMPIHIMKNLRICDDCHTVIKLISTVTDREFVIRDGV 870

Query: 775 RFHHFRDGKCSCGDYW 790
           RFHHF+ G CSC DYW
Sbjct: 871 RFHHFKGGSCSCMDYW 886



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 171/639 (26%), Positives = 281/639 (43%), Gaps = 99/639 (15%)

Query: 17  ASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF-DE 75
           A  L+ C  R+ +T   AR++H+ +I+ G      + N L+  Y     L  AR L  DE
Sbjct: 29  ADALRSCGARSALTG--ARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDE 86

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           I +P+++    ++  Y+   ++  A E+F + P   RD   +N +++ Y  +     A++
Sbjct: 87  ITEPNVITHNIMMNGYAKLGSLSDAVELFGRMP--TRDVASWNTIMSGYYQSGQFLNALD 144

Query: 136 LFRDMRRD-DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
           +F  MR+  D  P+ FTF  V+ +   +   E   +Q+   + K  +     V  AL+ +
Sbjct: 145 IFVSMRQTGDSLPNAFTFGCVMKSCGALGWHE-VALQLLGLLSKFDSQDDPDVQTALVDM 203

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
            V+C +  F S +         F  +     +   +M+ GY K+  +D A E    M E 
Sbjct: 204 LVRCGAMDFASKQ---------FSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPER 254

Query: 255 VGVAWNALI-----SGYVHRELKMLM----LRIQLDEFTYTSVISACANSGLFRLGKQVH 305
             V+WN +I     SG V   L M++      ++ D  TYTS ++ACA       GKQ+H
Sbjct: 255 DVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLH 314

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365
             ++R      P     V +A+V LY KCG   EA+ +F+ + +R+ VSW  ++  ++  
Sbjct: 315 VQVIRN----LPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQY 370

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425
           G   E+                               ++LF+QMR E      +A A  I
Sbjct: 371 GCFSES-------------------------------VELFNQMRAELMAVDQFALATLI 399

Query: 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV 485
           + C     +  G QLH+  + SG+  ++   N+LI+MYA+CG ++ A  +FN M   D V
Sbjct: 400 SGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIV 459

Query: 486 SWNAMIAALGQHGNGARA-------------------------------IELYEQMLKE- 513
           SW  MI A  Q GN A+A                               +++Y  ML E 
Sbjct: 460 SWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEK 519

Query: 514 GILPDRITFLTVLSACNHAGLVKEGRRYF-ETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
            ++PD +T++T+   C   G  K G +    T+    G+          I +  + G+ S
Sbjct: 520 DVIPDWVTYVTLFRGCADIGANKLGDQIIGHTV--KVGLILDTSVVNAVITMYSKCGRIS 577

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611
           EA+   D L  K     W A++ G   HG   +G QA E
Sbjct: 578 EARKAFDFLSRKDLVS-WNAMITGYSQHG---MGKQAIE 612



 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 107/395 (27%), Positives = 183/395 (46%), Gaps = 44/395 (11%)

Query: 27  NPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTT 86
           N +   L   +H+  + SG      + N LI +Y K   L  A  +F+ + + DIV+ T 
Sbjct: 404 NTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTG 463

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DV 145
           +I AYS   N+  ARE F+   +  R+ + +NAM+ AY  +      ++++ DM  + DV
Sbjct: 464 MITAYSQVGNIAKAREFFDD--MSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDV 521

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVS 205
            PD  T+ ++    A I    K   Q+    VK G  L TSV+NA+I++Y KC       
Sbjct: 522 IPDWVTYVTLFRGCADI-GANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKC------- 573

Query: 206 SRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265
               +  AR+ FD +  +D +SW  M+TGY ++     A E  D                
Sbjct: 574 --GRISEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFD---------------- 615

Query: 266 YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
                  +L    + D  +Y +V+S C++SGL   GK  +  +++ +   +P   L   +
Sbjct: 616 ------DILNKGAKPDYISYVAVLSGCSHSGLVEEGK-FYFDMMKRDHNISP--GLEHFS 666

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSAYVSAGLID----EAKSLFEAMRE 380
            +V L  + G + EA+++ ++MP +     W A+LSA  + G  D     AK LF+ +  
Sbjct: 667 CMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKHLFD-LDS 725

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
                + ++    A  G  ++  ++   MR +G K
Sbjct: 726 PGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIK 760



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 150/315 (47%), Gaps = 22/315 (6%)

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367
           LLR E     E ++  +N ++  Y K G +++A ++F +MP RD+ SWN I+S Y  +G 
Sbjct: 82  LLRDE---ITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQ 138

Query: 368 IDEAKSLFEAMRER-----NLLSWTVMISGLAQNGYGEEGLK---LFSQMRLEGFKPCDY 419
              A  +F +MR+      N  ++  ++      G+ E  L+   L S+   +       
Sbjct: 139 FLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQT 198

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
           A    +  C   GA++   +  +++     + ++   N+++  YA+   V+ A  +F +M
Sbjct: 199 ALVDMLVRC---GAMDFASKQFSRI----KNPTIICRNSMLVGYAKSHGVDHALEIFKSM 251

Query: 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
           P  D VSWN +I+AL + G    A+++   M  +G+ PD  T+ + L+AC     ++ G+
Sbjct: 252 PERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGK 311

Query: 540 R-YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCR 598
           + + + +     I P     +  ++L  + G F EAK V  SL  + S   W  L+ G  
Sbjct: 312 QLHVQVIRNLPHIDPYV--ASAMVELYAKCGCFKEAKRVFSSLRDRNSVS-WTVLIGGFL 368

Query: 599 IHGNIDLGIQAAEQL 613
            +G     ++   Q+
Sbjct: 369 QYGCFSESVELFNQM 383



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 117/330 (35%), Gaps = 100/330 (30%)

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC----- 474
           A A A+ SC    AL   R LH++L++ G  S +   N L+  Y  CG +  A       
Sbjct: 27  ALADALRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDE 86

Query: 475 ---------------------------VFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
                                      +F  MP  D  SWN +++   Q G    A++++
Sbjct: 87  ITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIF 146

Query: 508 EQMLKEG-ILPDRITFLTVLSACNHAG------------------------------LVK 536
             M + G  LP+  TF  V+ +C   G                              LV+
Sbjct: 147 VSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVR 206

Query: 537 EG-----RRYFETMHGP-----------YGIPPGEDH---------------YARFIDLL 565
            G      + F  +  P           Y    G DH               +   I  L
Sbjct: 207 CGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISAL 266

Query: 566 CRAGKFSEAKDVIDSLPFK---PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622
            ++G+  EA D++  +  K   P +  + + L  C    +++ G Q   Q+ + +P H  
Sbjct: 267 SKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLP-HID 325

Query: 623 TYV--LLSNMYANLGRWDDAARVRKLMRDR 650
            YV   +  +YA  G + +A RV   +RDR
Sbjct: 326 PYVASAMVELYAKCGCFKEAKRVFSSLRDR 355


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 248/513 (48%), Positives = 342/513 (66%), Gaps = 4/513 (0%)

Query: 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
           ++ ++FT ++V+ ACA+      GKQ H Y++    K   E  + V  ALV +Y +CG +
Sbjct: 6   VKPNQFTLSTVVKACASIASLEQGKQAHNYII----KMGFESDVVVQTALVHMYARCGSL 61

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNG 397
            +A  +F++M ER   +WNA+++ +     + +A  LF  M ER+++SWT +I+G AQNG
Sbjct: 62  EDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNG 121

Query: 398 YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN 457
           YG+E L +F+QMR  G K   +     +++CA L ALE GRQ HA +V SG+   +  G+
Sbjct: 122 YGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGS 181

Query: 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
           AL+ MYA+ G +E A  VF+ MP  + VSWN++I    QHG G  A+ L+EQML+ GI P
Sbjct: 182 ALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKP 241

Query: 518 DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577
           + I+F+ VLSAC+H GLV EGR YF  M   YGI P   HY   IDLL RAG   EA++ 
Sbjct: 242 NEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENF 301

Query: 578 IDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRW 637
           I+ +P +P   +W ALL  CRIHGN +L  + AE L  +    AG YVLLSN+YA  G+W
Sbjct: 302 INGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQW 361

Query: 638 DDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKL 697
           DDAA+VRKLM+DRGV K+PG SWIEV   +H F+  +T+HP+ + ++++LE L  +M+  
Sbjct: 362 DDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMKAA 421

Query: 698 GYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAF 757
           GYVP+  FVL D+E D+KE +LS HSEKLA+AFG++    G T+RV KNLR+CGDCH   
Sbjct: 422 GYVPNKNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLRVCGDCHTVI 481

Query: 758 KFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KF+S    R+IVVRD  RFHHF+DG+CSCGDYW
Sbjct: 482 KFISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/378 (30%), Positives = 177/378 (46%), Gaps = 56/378 (14%)

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           VKP+ FT ++V+ A A I   E Q  Q H  ++K G      V  AL+ +Y +C S    
Sbjct: 6   VKPNQFTLSTVVKACASIASLE-QGKQAHNYIIKMGFESDVVVQTALVHMYARCGS---- 60

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                +  A  VFD+M ER   +W  M+TG+ +N  +  A +    MSE   V+W A+I+
Sbjct: 61  -----LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIA 115

Query: 265 GYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           GY              +M    ++ D F   SV+SACA+     LG+Q HAY++++    
Sbjct: 116 GYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQS---- 171

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
                + V +ALV +Y K G + +A  +F++MP+R+ VSWN+I                 
Sbjct: 172 GFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSI----------------- 214

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
                         I+G AQ+G G + + LF QM   G KP + +F G +++C+  G + 
Sbjct: 215 --------------ITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVN 260

Query: 436 NGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAA 493
            GR     +  + G    +S    +I +  R G ++ A    N MP    VS W A++ A
Sbjct: 261 EGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGA 320

Query: 494 LGQHGNGARAIELYEQML 511
              HGN   A  + E +L
Sbjct: 321 CRIHGNTELAKRIAEHLL 338



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 171/361 (47%), Gaps = 43/361 (11%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            +  H ++I  GF+    +   L+ +Y +   L  A  +FD++ +        +I  ++ 
Sbjct: 29  GKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVFDKMSERSTRTWNAMITGHAQ 88

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
           + ++K A ++F +  +  RD V + A+I  Y+ N  G  ++ +F  MR+  +K D F   
Sbjct: 89  NRDMKKALKLFYE--MSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMG 146

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           SVLSA A +   E    Q H  VV+SG  L   V +AL+ +Y K  S         M  A
Sbjct: 147 SVLSACADLAALELG-RQFHAYVVQSGFALDIVVGSALVDMYAKSGS---------MEDA 196

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
            +VFD+MP+R+E+SW +++TG  ++   + A    +                      +M
Sbjct: 197 CQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFE----------------------QM 234

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
           L   I+ +E ++  V+SAC+++GL   G+  +  L+       P+ S      ++ L  +
Sbjct: 235 LQAGIKPNEISFVGVLSACSHTGLVNEGRG-YFNLMTQNYGIVPDVSHYT--CMIDLLGR 291

Query: 334 CGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
            G ++EA +  N MP E D+  W A+L A    G  + AK + E     +LL   V I+G
Sbjct: 292 AGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAE-----HLLGMEVQIAG 346

Query: 393 L 393
           +
Sbjct: 347 I 347



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 105/235 (44%), Gaps = 33/235 (14%)

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
           +G KP  +  +  + +CA + +LE G+Q H  ++  G++S +    AL+ MYARCG +E 
Sbjct: 4   KGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLED 63

Query: 472 ANCVFNT-------------------------------MPNVDSVSWNAMIAALGQHGNG 500
           A  VF+                                M   D VSW A+IA   Q+G G
Sbjct: 64  AGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYG 123

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
             ++ ++ QM K G+  DR    +VLSAC     ++ GR+ F       G        + 
Sbjct: 124 DESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQ-FHAYVVQSGFALDIVVGSA 182

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
            +D+  ++G   +A  V D +P +     W +++ GC  HG  +  +   EQ+ Q
Sbjct: 183 LVDMYAKSGSMEDACQVFDKMPQRNEVS-WNSIITGCAQHGRGNDAVLLFEQMLQ 236



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 72/341 (21%), Positives = 128/341 (37%), Gaps = 111/341 (32%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R  HA+++ SGF     + + L+D+Y KS  +  A  +FD++PQ              
Sbjct: 160 LGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQ-------------- 205

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                              R+ V +N++IT  + +  G+ A+ LF  M +  +KP+  +F
Sbjct: 206 -------------------RNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISF 246

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
             VLSA +            H  +V  G G F                       +LM  
Sbjct: 247 VGVLSACS------------HTGLVNEGRGYF-----------------------NLM-- 269

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
             + +  +P  D   +T M+    +   LD A  F++GM                     
Sbjct: 270 -TQNYGIVP--DVSHYTCMIDLLGRAGCLDEAENFINGMP-------------------- 306

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                ++ D   + +++ AC   G   L K++  +LL  E +    + L     L  +Y 
Sbjct: 307 -----VEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVL-----LSNIYA 356

Query: 333 KCGKVNEARDIFNQMPERDLV-----SW---NAILSAYVSA 365
             G+ ++A  +   M +R ++     SW     I+ A+V+ 
Sbjct: 357 AAGQWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAG 397


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  527 bits (1357), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 272/762 (35%), Positives = 432/762 (56%), Gaps = 97/762 (12%)

Query: 45  GFKPREHIINRLIDIYCKSLKLVYARTLFDEIP-----QPDIVARTTLIAAYSASDNVKL 99
           G+K  +  +  ++ + C SL L+    +          + ++   T L+  Y+    V  
Sbjct: 157 GWKASQFTLGSVLRV-CSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSE 215

Query: 100 AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL 159
           A  +F       ++ V + AM+T Y+ N +G+ A+E FR M    V+ + +TF ++L+A 
Sbjct: 216 AEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTAC 275

Query: 160 ALIVEEEKQCM--QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVF 217
           + ++    +C   Q+H  +VKSG G    V +AL+ +Y KC                   
Sbjct: 276 SSVL---ARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKC------------------- 313

Query: 218 DEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLR 277
                           G +KN     A+  L+ M ++  V+WN+L+ G+V   L+   LR
Sbjct: 314 ----------------GDLKN-----AKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALR 352

Query: 278 I---------QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALV 328
           +         ++D++T+ SV++ C    +    K VH  +++T  +         N  LV
Sbjct: 353 LFKNMHGRNMKIDDYTFPSVLNCCVVGSINP--KSVHGLIIKTGFE---------NYKLV 401

Query: 329 TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV 388
           +                          NA++  Y   G +D A ++FE M E++++SWT 
Sbjct: 402 S--------------------------NALVDMYAKTGDMDCAYTVFEKMLEKDVISWTS 435

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG 448
           +++G AQN   EE LK+F  MR+ G  P  +  A  +++CA L  LE G+Q+H   + SG
Sbjct: 436 LVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSG 495

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
              S S  N+L+ MYA+CG ++ A+ +F +M   D ++W A+I    Q+G G  +++ Y+
Sbjct: 496 LRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYD 555

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568
            M+  G  PD ITF+ +L AC+HAGLV EGR+YF+ M+  YGI PG +HYA  IDL  R+
Sbjct: 556 AMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRS 615

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628
           GK  EAK ++D +  KP A +W++LL+ CR+H N++L  +AA  LF+L P +A  YV+LS
Sbjct: 616 GKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMPYVMLS 675

Query: 629 NMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLE 688
           NMY+   +W+D A++RKLM+ +G+ KEPGCSW+E++++V+ F+ DD  HP    +Y  ++
Sbjct: 676 NMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHPREAEIYTKID 735

Query: 689 QLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLR 748
           +++L +++ GYVPD  F LHDM+ + KE  L+ HSEKLAVAFGL+  P  A +R+ KNLR
Sbjct: 736 EIILRIKEAGYVPDMSFSLHDMDKEGKEVGLAYHSEKLAVAFGLLAAPPSAPIRIFKNLR 795

Query: 749 ICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +CGDCH+A K++S+V  R I++RD   FHHFR+G+CSCGDYW
Sbjct: 796 VCGDCHSAMKYISRVFTRHIILRDSNCFHHFREGECSCGDYW 837



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 150/596 (25%), Positives = 279/596 (46%), Gaps = 91/596 (15%)

Query: 10  RTLANRYASQLQLCDPRNPIT-SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVY 68
           + + ++++S++ L  P NP    +  RS+H    +S      +  N+L++   KS ++  
Sbjct: 27  QVIMHKFSSKV-LSFPHNPCKFMAFLRSIHTTTAAS--YESIYQTNQLLNQLSKSGQVND 83

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           AR LFD++PQ D  +  T+I++Y     +  ARE+F+    K   T   +++I+ Y    
Sbjct: 84  ARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITW--SSIISGYCKFG 141

Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVL---SALALIVEEEKQCMQMHCTVVKSGTGLFT 185
               A +LFR MR +  K   FT  SVL   S+L LI   E     +H  VVK+G     
Sbjct: 142 CKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGE----MIHGFVVKNGFEGNV 197

Query: 186 SVLNALISVYVKCVSSPFVSSRSLMGAARRVFD--EMPERDELSWTTMMTGYVKNDYLDA 243
            V+  L+ +Y KC           +  A  +F   E   ++ + WT M+TGY +N     
Sbjct: 198 FVVTGLVDMYAKC---------KCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYK 248

Query: 244 AREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ 303
           A EF                  Y+H +       ++ +++T+ ++++AC++      G+Q
Sbjct: 249 AVEFFR----------------YMHAQ------GVECNQYTFPTILTACSSVLARCFGEQ 286

Query: 304 VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV 363
           VH +++++        ++ V +ALV +Y KCG +  A+++   M + D+VSWN+++  +V
Sbjct: 287 VHGFIVKSGFGS----NVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFV 342

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
             GL +EA  LF+ M  RN+                               K  DY F  
Sbjct: 343 RHGLEEEALRLFKNMHGRNM-------------------------------KIDDYTFPS 371

Query: 424 AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
            +  C  +G++ N + +H  ++ +G+++     NAL+ MYA+ G ++ A  VF  M   D
Sbjct: 372 VLNCCV-VGSI-NPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKD 429

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFE 543
            +SW +++    Q+ +   +++++  M   G+ PD+    ++LSAC    L++ G++   
Sbjct: 430 VISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQ--- 486

Query: 544 TMHGPY---GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
            +H  +   G+   +  Y   + +  + G   +A  +  S+  K     W A++ G
Sbjct: 487 -VHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVK-DVITWTAIIVG 540



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 152/287 (52%), Gaps = 10/287 (3%)

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
           S+   N L+    K G+VN+AR +F++MP++D  SWN ++S+YV+ G + EA+ LF+   
Sbjct: 64  SIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCS 123

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
            ++ ++W+ +ISG  + G   E   LF  MRLEG+K   +     +  C+ LG ++ G  
Sbjct: 124 CKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEM 183

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP--NVDSVSWNAMIAALGQH 497
           +H  +V +G++ ++     L+ MYA+C  V  A  +F  +     + V W AM+    Q+
Sbjct: 184 IHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQN 243

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG---PYGIPPG 554
           G+G +A+E +  M  +G+  ++ TF T+L+AC+        R + E +HG     G    
Sbjct: 244 GDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSV----LARCFGEQVHGFIVKSGFGSN 299

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
               +  +D+  + G    AK++++++        W +L+ G   HG
Sbjct: 300 VYVQSALVDMYAKCGDLKNAKNMLETME-DDDVVSWNSLMVGFVRHG 345


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  526 bits (1356), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 283/788 (35%), Positives = 434/788 (55%), Gaps = 84/788 (10%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           YAS LQ C  R      L   VHA ++ +G    E + +RL+++YC++            
Sbjct: 13  YASILQKC--RKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQT------------ 58

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
                                V+ AR MF+K  +  R+   + A++  Y    +    I+
Sbjct: 59  -------------------GCVEDARRMFDK--MSERNVFSWTAIMEMYCGLGDYEETIK 97

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LF  M  + V+PD+F F  V  A + + +  +    ++  ++  G    + V  +++ ++
Sbjct: 98  LFYLMVNEGVRPDHFVFPKVFKACSEL-KNYRVGKDVYDYMLSIGFEGNSCVKGSILDMF 156

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV-KNDYLDAAREFLDGMSEN 254
           +KC           M  ARR F+E+  +D   W  M++GY  K ++  A   F       
Sbjct: 157 IKC---------GRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVF------- 200

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
                            KM++  ++ +  T  S +SAC N  L R G+++H Y ++ E  
Sbjct: 201 ----------------RKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEEL 244

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAIL--SAYVSAG------ 366
            +    L V N+LV  Y KC  V  AR  F  + + DLVSWNA+L  + +   G      
Sbjct: 245 DS---DLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAAL 301

Query: 367 ----LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
                +  A S+F  +  R+++ W  +IS  AQ+G     L L  +M L   +       
Sbjct: 302 EFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMV 361

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
            A+ +C+ L AL  G+++H  ++  G D+     N+LI MY RCG ++ +  +F+ MP  
Sbjct: 362 SALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQR 421

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
           D VSWN MI+  G HG G  A+ L++Q    G+ P+ ITF  +LSAC+H+GL++EG +YF
Sbjct: 422 DLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYF 481

Query: 543 ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
           + M   Y + P  + YA  +DLL RAG+F+E  + I+ +PF+P+A +W +LL  CRIH N
Sbjct: 482 KMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCN 541

Query: 603 IDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIE 662
            DL   AA  LF+L P  +G YVL++N+Y+  GRW+DAA++R LM++RGV K PGCSWIE
Sbjct: 542 PDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIE 601

Query: 663 VDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTH 722
           V  K+H F+V DT+HP  + +   +E L  +++++GYVPDT FVL D++ D+KE++L  H
Sbjct: 602 VKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGH 661

Query: 723 SEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDG 782
           SEK+A+AFGL+    G  +R++KNLR+CGDCH+A KF+SKV  R+I++RD  RFHHF DG
Sbjct: 662 SEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDG 721

Query: 783 KCSCGDYW 790
            CSCGDYW
Sbjct: 722 VCSCGDYW 729



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 2/188 (1%)

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
           M L     C   +A  +  C  L  L  G Q+HAQLV +G D     G+ L+ +Y + G 
Sbjct: 1   MDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGC 60

Query: 469 VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
           VE A  +F+ M   +  SW A++      G+    I+L+  M+ EG+ PD   F  V  A
Sbjct: 61  VEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKA 120

Query: 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
           C+     + G+  ++ M    G           +D+  + G+   A+   + + FK    
Sbjct: 121 CSELKNYRVGKDVYDYMLS-IGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVF 178

Query: 589 IWEALLAG 596
           +W  +++G
Sbjct: 179 MWNIMVSG 186


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  526 bits (1356), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 278/759 (36%), Positives = 433/759 (57%), Gaps = 46/759 (6%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
           S LA  +HA +   GF     I N ++ +Y K   +  A T+F +I +P +    ++I  
Sbjct: 162 SRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYG 221

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
           YS       A ++FN+ P   RD V +N +I+ +S +  G   + +F +M      P+  
Sbjct: 222 YSQMYGPYKALQIFNRMP--ERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFM 279

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           T+ SVLSA A    + K    +H  +++    L     N LI +Y KC           +
Sbjct: 280 TYGSVLSACA-STSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKC---------GCL 329

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
             A+RVF  + E D +SW +++TG V             G+ E+  + +N          
Sbjct: 330 DLAKRVFKSLREHDHISWNSLITGVVHF-----------GLGEDALILFN---------- 368

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
            +M    + LDEF   +++  C+       G+ +H Y +++        S PV NA++T+
Sbjct: 369 -QMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGS----SAPVGNAIITM 423

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y KCG  ++A  +F  MP R+ +SW A+++A+  +G I +A+  F+ M ERN+++W  M+
Sbjct: 424 YAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSML 483

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
           S   QNG+ EEGLKL+  MR  G +P    F  +I +CA L  ++ G Q+       G  
Sbjct: 484 STYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLS 543

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
            ++S  N+++TMY+RCG+++ A   F+++ + D +SWNAM+AA  Q+G G + I+ +E M
Sbjct: 544 LNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDM 603

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
           LK    P+ I++++VLS C+H GLV EG+ YF++M   +GI P  +H++  +DLL RAG 
Sbjct: 604 LKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAGL 663

Query: 571 FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630
             +AKD+I+ +PFKP+A +W ALL  CR+H ++ L   AA++L +L    +  YVLLSNM
Sbjct: 664 LEQAKDLIEGMPFKPNATVWSALLGSCRVHHDLRLAETAAKKLMELDVEGSEGYVLLSNM 723

Query: 631 YANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQL 690
           Y+  G  D+ A +RKLM+ +G++   GCSWIEVDN+VHVF VD+T+HP+ + VY  LE++
Sbjct: 724 YSESGELDNVADMRKLMKVKGIRTSRGCSWIEVDNRVHVFTVDETSHPQIKEVYLKLEEM 783

Query: 691 VLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRIC 750
           +  +   G     +  +H      K+Y    HSEKLA AFGL+ LP    + V+KNLR+C
Sbjct: 784 MKMIEDTGKYITVESSVH----RSKKY----HSEKLAFAFGLLNLPSWMPIHVMKNLRVC 835

Query: 751 GDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
            DCH   K +S V  RE+++RDG RFHHF+DG CSC DY
Sbjct: 836 DDCHLVIKLLSLVTSRELIMRDGYRFHHFKDGICSCKDY 874



 Score =  225 bits (574), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 177/645 (27%), Positives = 286/645 (44%), Gaps = 99/645 (15%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           +AR +HA +I SG      ++N L+ +Y        A  +F E    +I    T+I A  
Sbjct: 26  IARKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHRNIFTWNTMIRALV 85

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD----VKPD 148
           +S  +  A ++F++ P++++D+V +  MI+ YS N     + E F  M RD        D
Sbjct: 86  SSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYD 145

Query: 149 NFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
            F+FTSV+ A   +  + +  +Q+H  V K G G+ T + N+++ +YVKC          
Sbjct: 146 PFSFTSVMKACGSL-GDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGD-------- 196

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
            +  A  VF ++       W +M+ GY +      A +  + M E   V+WN LIS +  
Sbjct: 197 -VDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQ 255

Query: 269 R--ELKMLMLRIQL-------DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
               ++ L + +++       +  TY SV+SACA++   + G  +HA +LR E       
Sbjct: 256 HGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRME----HSL 311

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
            L   N L+ +Y KCG ++ A+ +F  + E D +SWN++++  V  GL            
Sbjct: 312 DLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGL------------ 359

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
                              GE+ L LF+QMR       ++     +  C+G      G  
Sbjct: 360 -------------------GEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGEL 400

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           LH   + SG  SS   GNA+ITMYA+CG  + A+ VF  MP  +++SW AMI A  + G+
Sbjct: 401 LHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGD 460

Query: 500 GARA-------------------------------IELYEQMLKEGILPDRITFLTVLSA 528
             +A                               ++LY  M   G+ PD ITF T + A
Sbjct: 461 IGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRA 520

Query: 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
           C    +VK G +   T    +G+          + +  R G   EAK+  DS+  K    
Sbjct: 521 CADLAIVKLGMQVV-THATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLIS 579

Query: 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLM-----PHHAGTYVLLS 628
            W A+LA    +G   LGI+  +    ++     P+H     +LS
Sbjct: 580 -WNAMLAAFAQNG---LGIKVIDTFEDMLKTECKPNHISYVSVLS 620



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 154/341 (45%), Gaps = 50/341 (14%)

Query: 28  PITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTL 87
           P  +S    +H + I SG      + N +I +Y K      A  +F  +P  + ++ T +
Sbjct: 392 PDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAM 451

Query: 88  IAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147
           I A+S S ++  AR  F+  P   R+ V +N+M++ Y  N      ++L+  MR + V+P
Sbjct: 452 ITAFSRSGDIGKARGYFDMMP--ERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQP 509

Query: 148 DNFTFTSVLSA---LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           D  TFT+ + A   LA++    K  MQ+     K G  L  SV N+++++Y +C      
Sbjct: 510 DWITFTTSIRACADLAIV----KLGMQVVTHATKFGLSLNVSVANSIVTMYSRC------ 559

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVAWNALI 263
               L+  A+  FD + ++D +SW  M+  + +N   +     F D              
Sbjct: 560 ---GLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFED-------------- 602

Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPE-FSL 321
                    ML    + +  +Y SV+S C++ GL   GK     + R     PT E FS 
Sbjct: 603 ---------MLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFS- 652

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
                +V L  + G + +A+D+   MP + +   W+A+L +
Sbjct: 653 ----CMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALLGS 689



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 15/138 (10%)

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
           SQ   + FK C +                  R+LHAQL+ SG DSSL   N L+ MY+ C
Sbjct: 7   SQKFYDAFKQCSFTHKSP----------HIARKLHAQLILSGLDSSLFLLNNLLHMYSNC 56

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G+   A  VF    + +  +WN MI AL      + A +L+++M     + D +++ T++
Sbjct: 57  GLTHDAFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVR--VKDSVSWTTMI 114

Query: 527 SACNHAGLVKEGRRYFET 544
           S  +  G      R FET
Sbjct: 115 SGYSQNGF---HSRSFET 129


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  526 bits (1356), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 278/757 (36%), Positives = 415/757 (54%), Gaps = 100/757 (13%)

Query: 34   ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
             + +H  ++ SG K   H+ N L+++Y +   L+ A+ +F+                   
Sbjct: 450  GKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFE------------------- 490

Query: 94   SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                            + RD + +N+MI  ++ + +   A +LF++M+ ++++PDN TF 
Sbjct: 491  --------------GTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFA 536

Query: 154  SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
            SVLS      E  +   Q+H  + +SG  L  ++ NALI++Y++C S         +  A
Sbjct: 537  SVLSGCK-NPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGS---------LQDA 586

Query: 214  RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
            R VF  +  RD +SWT M+ G         A E            W     G+  R +K 
Sbjct: 587  RNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELF----------WQMQNEGF--RPVKS 634

Query: 274  LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
                      T++S++  C +S     GK+V AY+L                        
Sbjct: 635  ----------TFSSILKVCTSSACLDEGKKVIAYIL------------------------ 660

Query: 334  CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
                       N   E D    NA++SAY  +G + +A+ +F+ M  R+++SW  +I+G 
Sbjct: 661  -----------NSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGY 709

Query: 394  AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL 453
            AQNG G+  ++   QM+ +   P  ++F   + +C+   ALE G+++HA++V       +
Sbjct: 710  AQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDV 769

Query: 454  SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE 513
              G ALI+MYA+CG    A  VF+ +   + V+WNAMI A  QHG  ++A+  +  M KE
Sbjct: 770  RVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKE 829

Query: 514  GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE 573
            GI PD  TF ++LSACNHAGLV EG + F +M   YG+ P  +HY   + LL RA +F E
Sbjct: 830  GIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQE 889

Query: 574  AKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN 633
            A+ +I+ +PF P A +WE LL  CRIHGNI L   AA    +L   +   Y+LLSN+YA 
Sbjct: 890  AETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAA 949

Query: 634  LGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLE 693
             GRWDD A++R++M  RG++KEPG SWIEVDN +H F+  D +HPE   +Y  L++L +E
Sbjct: 950  AGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVE 1009

Query: 694  MRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDC 753
            M + GY PDT+ VLHD+    +E +L THSE+LA+A+GL+K P G  +R+ KNLRICGDC
Sbjct: 1010 MEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDC 1069

Query: 754  HNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            H A KF+SK+VGREI+ RD  RFH F++GKCSC DYW
Sbjct: 1070 HTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 1106



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 169/627 (26%), Positives = 280/627 (44%), Gaps = 92/627 (14%)

Query: 39  AHMISSGFKPREHIINRLIDIYCKSLKLVYARTL----FDEIPQPDIVARTTLIAAYSAS 94
             M S G  P +     L+D +     L   + +     +E    DI   T L+      
Sbjct: 218 GQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRC 277

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
            +V  A++ F  T    RD V YNA+I A + + +   A E +  MR D V  +  T+ S
Sbjct: 278 GDVDSAKQAFKGTA--DRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLS 335

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           +L+A +     E   + +H  + + G      + NALIS+Y +C   P          AR
Sbjct: 336 ILNACSTSKALEAGKL-IHSHISEDGHSSDVQIGNALISMYARCGDLP---------KAR 385

Query: 215 RVFDEMPERDELSWTTMMTGYV-KNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
            +F  MP+RD +SW  ++ GY  + D  +A R +    SE V                  
Sbjct: 386 ELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGV------------------ 427

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
                +    T+  ++SACANS  +  GK +H  +LR+  K     +    NAL+ +Y +
Sbjct: 428 -----KPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLA----NALMNMYRR 478

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
           CG + EA+++F     RD++SWN++++ +   G  + A                      
Sbjct: 479 CGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETA---------------------- 516

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL 453
                     KLF +M+ E  +P +  FA  ++ C    ALE G+Q+H ++  SG    +
Sbjct: 517 ---------YKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDV 567

Query: 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE 513
           + GNALI MY RCG ++ A  VF+++ + D +SW AMI      G   +AIEL+ QM  E
Sbjct: 568 NLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNE 627

Query: 514 GILPDRITFLTVLSACNHAGLVKEGRRYFE-TMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
           G  P + TF ++L  C  +  + EG++     ++  Y +  G  +    I    ++G  +
Sbjct: 628 GFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGN--ALISAYSKSGSMT 685

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH----HAGTYVLLS 628
           +A++V D +P +     W  ++AG   +G   LG  A E  +Q+       +  ++V L 
Sbjct: 686 DAREVFDKMPSRDIVS-WNKIIAGYAQNG---LGQTAVEFAYQMQEQDVVPNKFSFVSLL 741

Query: 629 NMYANLGRWDDAARV------RKLMRD 649
           N  ++    ++  RV      RKL  D
Sbjct: 742 NACSSFSALEEGKRVHAEIVKRKLQGD 768



 Score =  208 bits (530), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 158/602 (26%), Positives = 268/602 (44%), Gaps = 108/602 (17%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y + LQ C  +  +    A+ +HA M+ +   P   + N LI++Y K   ++ A  +F E
Sbjct: 30  YVALLQNCTRKRLLPE--AKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKE 87

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P+ D+++  +LI+ Y        A++ F K                          A +
Sbjct: 88  MPRRDVISWNSLISCY--------AQQGFKKK-------------------------AFQ 114

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LF +M+     P+  T+ S+L+A     E E    ++H  ++K+G      V N+L+S+Y
Sbjct: 115 LFEEMQNAGFIPNKITYISILTACYSPAELENG-KKIHSQIIKAGYQRDPRVQNSLLSMY 173

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            KC   P          AR+VF  +  RD +S+ TM+  Y +  Y+         MS   
Sbjct: 174 GKCGDLP---------RARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSE- 223

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                                 I  D+ TY +++ A     +   GK++H    +   + 
Sbjct: 224 ---------------------GISPDKVTYINLLDAFTTPSMLDEGKRIH----KLTVEE 258

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
                + V  ALVT+  +CG V+ A+  F    +RD+V +NA+++A              
Sbjct: 259 GLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAA-------------- 304

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
                            LAQ+G+  E  + + +MR +G       +   + +C+   ALE
Sbjct: 305 -----------------LAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALE 347

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            G+ +H+ +   G+ S +  GNALI+MYARCG +  A  +F TMP  D +SWNA+IA   
Sbjct: 348 AGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYA 407

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
           +  +   A+ LY+QM  EG+ P R+TFL +LSAC ++    +G+   E +    GI    
Sbjct: 408 RREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRS-GIKSNG 466

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
                 +++  R G   EA++V +    +     W +++AG   HG+     + A +LFQ
Sbjct: 467 HLANALMNMYRRCGSLMEAQNVFEGTQARDVIS-WNSMIAGHAQHGS----YETAYKLFQ 521

Query: 616 LM 617
            M
Sbjct: 522 EM 523



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 158/342 (46%), Gaps = 48/342 (14%)

Query: 279 QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
           + +  TY +++  C    L    K++HA ++  EA   P+  L  +N L+ +Y KC  V 
Sbjct: 24  ETERATYVALLQNCTRKRLLPEAKRIHAQMV--EAWVGPDIFL--SNLLINMYVKCRSVL 79

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGY 398
           +A  +F +MP RD++SWN+++S Y   G   +A  LFE M                QN  
Sbjct: 80  DAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEM----------------QNA- 122

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
                         GF P    +   +T+C     LENG+++H+Q++ +GY       N+
Sbjct: 123 --------------GFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNS 168

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           L++MY +CG +  A  VF  +   D VS+N M+    Q       + L+ QM  EGI PD
Sbjct: 169 LLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPD 228

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVI 578
           ++T++ +L A     ++ EG+R    +    G+          + +  R G    AK   
Sbjct: 229 KVTYINLLDAFTTPSMLDEGKR-IHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQA- 286

Query: 579 DSLPFKPSAP----IWEALLAGCRIHGNIDLGIQAAEQLFQL 616
               FK +A     ++ AL+A    HG+    ++A EQ +++
Sbjct: 287 ----FKGTADRDVVVYNALIAALAQHGH---NVEAFEQYYRM 321



 Score =  108 bits (271), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 158/362 (43%), Gaps = 76/362 (20%)

Query: 3   MKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCK 62
           M+N  + R + + ++S L++C     +     + V A++++SG++    + N LI  Y K
Sbjct: 624 MQNEGF-RPVKSTFSSILKVCTSSACLDE--GKKVIAYILNSGYELDTGVGNALISAYSK 680

Query: 63  SLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
           S  +  AR +FD++P  DIV+                                 +N +I 
Sbjct: 681 SGSMTDAREVFDKMPSRDIVS---------------------------------WNKIIA 707

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALI--VEEEKQCMQMHCTVVKSG 180
            Y+ N  G  A+E    M+  DV P+ F+F S+L+A +    +EE K   ++H  +VK  
Sbjct: 708 GYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGK---RVHAEIVKRK 764

Query: 181 TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY 240
                 V  ALIS+Y KC S          G A+ VFD + E++ ++W  M+  Y ++  
Sbjct: 765 LQGDVRVGAALISMYAKCGSQ---------GEAQEVFDNIIEKNVVTWNAMINAYAQHGL 815

Query: 241 LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRL 300
              A  F + M +                        I+ D  T+TS++SAC ++GL   
Sbjct: 816 ASKALGFFNCMEKE----------------------GIKPDGSTFTSILSACNHAGLVLE 853

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAIL 359
           G Q+ +  + +E    P  ++     LV L  +  +  EA  + NQMP   D   W  +L
Sbjct: 854 GYQIFSS-MESEYGVLP--TIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLL 910

Query: 360 SA 361
            A
Sbjct: 911 GA 912


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 299/841 (35%), Positives = 446/841 (53%), Gaps = 133/841 (15%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           + S L+ C     +   L + VH  ++ +GF   E + N L+ +Y K      AR+LFD 
Sbjct: 13  FPSVLKACTVTKDLV--LGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDA 70

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           IP                                  R  V +NA+ + Y H+     A+ 
Sbjct: 71  IPD---------------------------------RSVVSWNALFSCYVHSDMHGEAVS 97

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LF DM    ++P+ F+ +S+++    + E+  Q  ++H  ++K G        NAL+ +Y
Sbjct: 98  LFHDMVLSGIRPNEFSLSSMINVCTGL-EDSVQGRKIHGYLIKLGYDSDAFSANALVDMY 156

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            K           ++  A  VFDE+ + D +SW  ++ G V ++Y   A E L  M+++ 
Sbjct: 157 AKV---------GILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKS- 206

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-- 313
           G+  N                      FT +S + ACA   L  LG+Q+H+ L++ +   
Sbjct: 207 GMCPNM---------------------FTLSSALKACAGMALRELGRQLHSSLIKMDMGS 245

Query: 314 -------------------------KPTPEFSLPVNNALVTLYWKCGKVNEARDIF---- 344
                                    K  PE  +   NA+++ + +  +  EA  +F    
Sbjct: 246 DSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMH 305

Query: 345 ------NQMP-----------------------------ERDLVSWNAILSAYVSAGLID 369
                 NQ                               E D    N+++  Y   G ++
Sbjct: 306 TEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVE 365

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
           +A  +FE     +L+ +T +++  AQ+G GEE L+L+ +M+  G KP  +  +  + +CA
Sbjct: 366 DATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACA 425

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
            L A E G+Q+H  ++  G+ S + AGN+L+ MYA+CG +E A+C F+ +P    VSW+A
Sbjct: 426 SLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSA 485

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY 549
           MI  L QHG G  A++L++QMLK G+ P+ IT ++VL ACNHAGLV E + YF +M   +
Sbjct: 486 MIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILF 545

Query: 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609
           GI P ++HYA  IDLL RAGK   A ++++ +PF+ +A +W ALL   RIH NIDLG QA
Sbjct: 546 GIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQA 605

Query: 610 AEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHV 669
           AE L  L P  +GT+VLL+N+YA++G WD  ARVR+LM+D  VKKEPG SW+EV +KV+ 
Sbjct: 606 AEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYT 665

Query: 670 FLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVA 729
           F+V D +H  +  +Y  L++L   ++K GYVP  +  LHD+E  +KE  L  HSEKLAVA
Sbjct: 666 FIVGDRSHSRSTEIYAKLDELSDLLKKAGYVPMVEIDLHDVERSEKEQLLYHHSEKLAVA 725

Query: 730 FGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
           FGL+  P GA +RV KNLRIC DCH   KF+SK+V REI+VRD  RFHHFR+G CSCG+Y
Sbjct: 726 FGLIATPPGAPIRVKKNLRICFDCHTVLKFISKIVSREIIVRDTNRFHHFREGSCSCGEY 785

Query: 790 W 790
           W
Sbjct: 786 W 786



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/347 (32%), Positives = 171/347 (49%), Gaps = 45/347 (12%)

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           M +L I+ +EF + SV+ AC  +    LGKQVH  ++ T    + EF   V N+LV LY 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVT-GFDSDEF---VANSLVILYA 56

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           KCG   +AR +F+ +P+R +VSWNA+ S YV + +  EA SLF                 
Sbjct: 57  KCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFH---------------- 100

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
                           M L G +P +++ +  I  C GL     GR++H  L+  GYDS 
Sbjct: 101 ---------------DMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSD 145

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
             + NAL+ MYA+ G++E A+ VF+ +   D VSWNA+IA    H    RA+EL  +M K
Sbjct: 146 AFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNK 205

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY--ARFIDLLCRAGK 570
            G+ P+  T  + L AC    L + GR+   ++     +  G D +     ID+  +   
Sbjct: 206 SGMCPNMFTLSSALKACAGMALRELGRQLHSSL---IKMDMGSDSFLGVGLIDMYSKCNS 262

Query: 571 FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
             +A+ V   +P +     W A+++G   H   +   +AA  LF LM
Sbjct: 263 MDDARLVFKLMPERDMIA-WNAVISG---HSQNEEDEEAA-SLFPLM 304



 Score =  149 bits (377), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 135/524 (25%), Positives = 217/524 (41%), Gaps = 129/524 (24%)

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           +K + F F SVL A   + ++     Q+H  VV +G      V N+L+ +Y KC      
Sbjct: 6   IKCNEFAFPSVLKACT-VTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG---- 60

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                 G AR +FD +P+R  +SW  + + YV +D             E V +  + ++S
Sbjct: 61  -----FGDARSLFDAIPDRSVVSWNALFSCYVHSDM----------HGEAVSLFHDMVLS 105

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
           G            I+ +EF+ +S+I+ C        G+++H YL++     +  FS    
Sbjct: 106 G------------IRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKL-GYDSDAFS---A 149

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
           NALV +Y K G + +A  +F+++ + D+VSWNAI                          
Sbjct: 150 NALVDMYAKVGILEDASSVFDEIAKPDIVSWNAI-------------------------- 183

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
                I+G   + Y    L+L  +M   G  P  +  + A+ +CAG+   E GRQLH+ L
Sbjct: 184 -----IAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSL 238

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
           +     S    G  LI MY++C  ++ A  VF  MP  D ++WNA+I+   Q+     A 
Sbjct: 239 IKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAA 298

Query: 505 ELYEQMLKEGILPDRITFLTVLSA---------CN--HAGLVKEGRRYFETMHGPYGIPP 553
            L+  M  EGI  ++ T  TVL +         C   HA  +K G  +            
Sbjct: 299 SLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEF------------ 346

Query: 554 GEDHYA--RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611
             D+Y     ID   + G   +A  V +  P                    +DL +    
Sbjct: 347 --DNYVVNSLIDTYGKCGHVEDATRVFEESPI-------------------VDLVL---- 381

Query: 612 QLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKE 655
                       +  L   YA  G+ ++A R+   M+DRG+K +
Sbjct: 382 ------------FTSLVTAYAQDGQGEEALRLYLEMQDRGIKPD 413


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 274/759 (36%), Positives = 432/759 (56%), Gaps = 63/759 (8%)

Query: 48  PREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKT 107
           P  +++N L+  Y +S +L  AR LFD +P P++  R  L++A + +  +     +F   
Sbjct: 43  PPTYVLNHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAHARLLPDMDRLFASM 102

Query: 108 PLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD-------VKPDNFTFTSVLSALA 160
           P   RD V YNA+I  +S       A   +R + R++       V+P   T + ++ A A
Sbjct: 103 P--QRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGMVMA-A 159

Query: 161 LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEM 220
             + +     Q+HC +++ G G +    + L+ +Y K           L+G A+RVFDEM
Sbjct: 160 SALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAK---------MGLIGDAKRVFDEM 210

Query: 221 PERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL--------- 271
             ++ + + TM+TG ++   ++ AR   + M +   + W  +++G     L         
Sbjct: 211 VVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFR 270

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
           +M    + +D++T+ S+++AC        GKQ+HAY +RT      + ++ V +ALV +Y
Sbjct: 271 RMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRT----LYDGNIFVGSALVDMY 326

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            KC  +  A  +F +M  +                               N++SWT MI 
Sbjct: 327 SKCRSIRLAEAVFRRMTCK-------------------------------NIISWTAMIV 355

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
           G  QNG GEE +++FS+M+ +G KP D+     I+SCA L +LE G Q H   + SG   
Sbjct: 356 GYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRP 415

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
            ++  +AL+T+Y +CG +E A+ +F+ MP  D VS+ A+++   Q G     I+L+E+ML
Sbjct: 416 YITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKML 475

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571
            +G+ P+ +TF+ VLSAC+ +GLV++G  YF +M   +GI   +DHY   IDL  R+G+ 
Sbjct: 476 LKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRL 535

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631
            EA++ I  +P  P A  W  LL+ CR+ G++++G  AAE L +  P +  +YVLL +M+
Sbjct: 536 KEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQNPASYVLLCSMH 595

Query: 632 ANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLV 691
           A+ G W + A +R+ MRDR VKKEPGCSWI+  N+VH+F  DD +HP +  +Y+ L+ L 
Sbjct: 596 ASKGEWSEVALLRRGMRDRQVKKEPGCSWIKYKNRVHIFSADDQSHPFSGTIYEKLQWLN 655

Query: 692 LEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICG 751
            +M + GY PD   VLHD+   +K + LS HSEKLA+AFGL+ +P    +RV+KNLR+C 
Sbjct: 656 SKMAEEGYKPDVSSVLHDVADAEKVHMLSNHSEKLAIAFGLIFVPEEMPIRVVKNLRVCV 715

Query: 752 DCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           DCHNA KF+SK+ GR+I+VRD  RFH F +G CSCGD+W
Sbjct: 716 DCHNATKFISKITGRDILVRDAVRFHKFSNGICSCGDFW 754



 Score =  166 bits (419), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 132/484 (27%), Positives = 215/484 (44%), Gaps = 73/484 (15%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           +L R VH  ++  GF       + L+D+Y K   +  A+ +FDE+   ++V   T+I   
Sbjct: 166 ALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTMITGL 225

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                V+ AR +F    +  RD++ +  M+T  + N     A+++FR MR + V  D +T
Sbjct: 226 LRCKMVEEARGVFEA--MVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYT 283

Query: 152 FTSVLSAL-ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           F S+L+A  AL   EE +  Q+H   +++       V +AL+ +Y KC S         +
Sbjct: 284 FGSILTACGALAASEEGK--QIHAYTIRTLYDGNIFVGSALVDMYSKCRS---------I 332

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
             A  VF  M  ++ +SWT M+ GY +N   + A      M  +                
Sbjct: 333 RLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTD---------------- 376

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
                  I+ ++FT  SVIS+CAN      G Q H   L +  +P     + V++ALVTL
Sbjct: 377 ------GIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPY----ITVSSALVTL 426

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y KCG + +A  +F++MP  D VS+ A++S Y                            
Sbjct: 427 YGKCGSIEDAHRLFDEMPFHDQVSYTALVSGY---------------------------- 458

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG-RQLHAQLVHSGY 449
              AQ G  +E + LF +M L+G KP    F G +++C+  G +E G    H+     G 
Sbjct: 459 ---AQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGI 515

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNV-DSVSWNAMIAALGQHGNGARAIELYE 508
                    +I +Y+R G ++ A      MP   D++ W  +++A    G+        E
Sbjct: 516 VLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKWAAE 575

Query: 509 QMLK 512
            +LK
Sbjct: 576 NLLK 579



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 136/280 (48%), Gaps = 41/280 (14%)

Query: 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAI 358
           R+   VH  +LRT   P P + L   N L+T Y + G++  AR +F+ MP+ +L + NA+
Sbjct: 26  RVPGAVHCLVLRTLPHPPPTYVL---NHLLTAYARSGRLPLARRLFDAMPDPNLFTRNAL 82

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK-----LFSQMRLEG 413
           LSA   A L+ +   LF +M +R+ +S+  +I+G +  G            L  +  ++G
Sbjct: 83  LSALAHARLLPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDG 142

Query: 414 --FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA------- 464
              +P     +G + + + LG    GRQ+H Q++  G+ +     + L+ MYA       
Sbjct: 143 ARVRPSRITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGD 202

Query: 465 ------------------------RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
                                   RC +VE A  VF  M + DS++W  M+  L Q+G  
Sbjct: 203 AKRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQ 262

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
           + A++++ +M  EG+  D+ TF ++L+AC      +EG++
Sbjct: 263 SEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQ 302


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 325/913 (35%), Positives = 468/913 (51%), Gaps = 176/913 (19%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y+  L  C     +   L   +HAH+  SG      I N LI++Y K     YAR L DE
Sbjct: 59  YSKLLSQCCTTKSLRPGL--QIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDE 116

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
             +P                                 D V ++A+I+ Y+ N  G  A+ 
Sbjct: 117 SSEP---------------------------------DLVSWSALISGYAQNGLGGGALM 143

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
            F +M    VK + FTF+SVL A + IV++ +   Q+H  VV SG      V N L+ +Y
Sbjct: 144 AFHEMHLLGVKCNEFTFSSVLKACS-IVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMY 202

Query: 196 VKCVSSPFVSSRSLM------------------------GAARRVFDEMP----ERDELS 227
            KC    F+ S+ L                         G A  +F EM     + +E S
Sbjct: 203 AKC--DEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFS 260

Query: 228 WTTMMT----------GYVKNDYLDAAREFLDGMSEN--------VG------------- 256
            ++M+           G + + YL       D  S N        VG             
Sbjct: 261 LSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIK 320

Query: 257 ----VAWNALISGYV---HRELKMLMLR------IQLDEFTYTSVISACANSGLFRLGKQ 303
               V+WNA+I+G V   H E  + +L       I  + FT +S + ACA  GL  LG+Q
Sbjct: 321 QPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQ 380

Query: 304 VHAYLLRTEAKPT---------------------------PEFSLPVNNALVTLYWKCGK 336
           +H+ L++ + +                             PE  L   NA+++ Y +  +
Sbjct: 381 LHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWE 440

Query: 337 VNEARDIFNQMPER---------------------------------------DLVSWNA 357
             EA  +F +M +                                        D+   N+
Sbjct: 441 DMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNS 500

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
           ++ +Y     +++A+ +FE     +L+S+T MI+  AQ G GEE LKLF +M+    KP 
Sbjct: 501 LIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPD 560

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
            +  +  + +CA L A E G+QLH  ++  G+   + AGN+L+ MYA+CG ++ A   F+
Sbjct: 561 RFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFS 620

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKE 537
            +     VSW+AMI  L QHG+G +A++L+ QMLKEG+ P+ IT ++VL ACNHAGLV E
Sbjct: 621 ELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTE 680

Query: 538 GRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
            + YFE+M   +G  P ++HYA  IDLL RAGK +EA ++++ +PF+ +A +W ALL   
Sbjct: 681 AKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAA 740

Query: 598 RIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPG 657
           RIH +++LG +AAE LF L P  +GT+VLL+N+YA+ G+W++ A VR+LMRD  VKKEPG
Sbjct: 741 RIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPG 800

Query: 658 CSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEY 717
            SWIEV +KV+ FLV D +H  +Q +Y  L++L   M K GYVP  +  LHD+E  +KE 
Sbjct: 801 MSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKEL 860

Query: 718 ALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFH 777
            L  HSEKLAVAFGL+  P GA +RV KNLR+C DCH AFK++ K+V REI+VRD  RFH
Sbjct: 861 LLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFH 920

Query: 778 HFRDGKCSCGDYW 790
           HF+DG CSCGDYW
Sbjct: 921 HFKDGSCSCGDYW 933



 Score =  186 bits (473), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 132/461 (28%), Positives = 218/461 (47%), Gaps = 82/461 (17%)

Query: 145 VKPDNFTFTSV----LSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVS 200
           +   NFT TSV    L +     +  +  +Q+H  + KSG     S+ N LI++Y KC +
Sbjct: 47  IDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRN 106

Query: 201 SPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWN 260
                     G AR++ DE  E D +SW+ +++GY +N                 G+   
Sbjct: 107 ---------FGYARKLVDESSEPDLVSWSALISGYAQN-----------------GLGGG 140

Query: 261 ALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
           AL++ +     +M +L ++ +EFT++SV+ AC+     R+GKQVH  ++ +      E  
Sbjct: 141 ALMAFH-----EMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVS----GFEGD 191

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           + V N LV +Y KC +  +++ +F+++PER++VSWNA+ S YV                 
Sbjct: 192 VFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYV----------------- 234

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
                         Q  +  E + LF +M L G KP +++ +  + +C GL     G+ +
Sbjct: 235 --------------QIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKII 280

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           H  L+  GYD    + NAL+ MYA+ G +  A  VF  +   D VSWNA+IA    H + 
Sbjct: 281 HGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHH 340

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET-----MHGPYGIPPGE 555
            +A+EL  QM + GI P+  T  + L AC   GL + GR+   +     M     +  G 
Sbjct: 341 EQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVG- 399

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
                 +D+  +     +A+   + LP K     W A+++G
Sbjct: 400 -----LVDMYSKCDLLEDARMAFNLLPEKDLIA-WNAIISG 434


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 286/737 (38%), Positives = 421/737 (57%), Gaps = 50/737 (6%)

Query: 62  KSLKLVYARTL-----FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVF 116
           K LK ++A+ L     FD    P   +R    AA S   ++  A+++F++ P     T  
Sbjct: 49  KQLKQIHAQMLRTGLFFD----PFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYT-- 102

Query: 117 YNAMITAYSHNSNGHAAIELF-RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
           +N +I AY+ +SN H ++ +F R + +    PD FTF  ++ A A  +EE       H  
Sbjct: 103 WNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKA-ASELEELFTGKAFHGM 161

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
           V+K   G    +LN+LI  Y KC           +G   RVF  +P RD +SW +M+T +
Sbjct: 162 VIKVLLGSDVFILNSLIHFYAKC---------GELGLGYRVFVNIPRRDVVSWNSMITAF 212

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
           V+    + A E    M E   V  N +                     T   V+SACA  
Sbjct: 213 VQGGCPEEALELFQEM-ETQNVKPNGI---------------------TMVGVLSACAKK 250

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
             F  G+ VH+Y+ R         SL ++NA++ +Y KCG V +A+ +F++MPE+D+VSW
Sbjct: 251 SDFEFGRWVHSYIERNRIGE----SLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSW 306

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL-EGF 414
             +L  Y   G  D A+ +F+AM  +++ +W  +IS   Q G  +E L+LF +++L +  
Sbjct: 307 TTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTA 366

Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
           KP +      +++CA LGA++ G  +H  +   G   +     +LI MY +CG ++ A  
Sbjct: 367 KPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALM 426

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
           VF+++   D   W+AMIA L  HG+G  AI L+ +M ++ + P+ +TF  +L AC+H GL
Sbjct: 427 VFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGL 486

Query: 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
           V+EGR +F  M   YG+ PG  HYA  +D+L RAG   EA ++I+ +P  P+A +W ALL
Sbjct: 487 VEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALL 546

Query: 595 AGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKK 654
             C IH N+ L  QA  QL +L P + G YVLLSN+YA  G+WD  + +RKLMRD G+KK
Sbjct: 547 GACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKK 606

Query: 655 EPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDM-ESD 713
           EPGCS IEVD  VH FLV D +HP A+ +Y  L+++V  +  +GYVP+   +L  + E D
Sbjct: 607 EPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEED 666

Query: 714 QKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDG 773
            KE AL  HSEKLA+AFGL+       +R++KNLR+CGDCH+  K +SK+  REI++RD 
Sbjct: 667 VKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDR 726

Query: 774 KRFHHFRDGKCSCGDYW 790
            RFHHFR+G CSC DYW
Sbjct: 727 YRFHHFREGHCSCMDYW 743



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 144/561 (25%), Positives = 236/561 (42%), Gaps = 128/561 (22%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSL--KLVYARTLFDEIPQPDIVARTTLIAAYS 92
           + +HA M+ +G        +RLI     S    L YA+ +FD+IP P++    TLI AY+
Sbjct: 52  KQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYA 111

Query: 93  ASDN---------------------------VKLAREM--------FNKTPLKM---RDT 114
           +S N                           +K A E+        F+   +K+    D 
Sbjct: 112 SSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDV 171

Query: 115 VFYNAMITAYSHNSNGHAAIELFRDMRRDD------------------------------ 144
              N++I  Y+          +F ++ R D                              
Sbjct: 172 FILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQ 231

Query: 145 -VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
            VKP+  T   VLSA A   + E     +H  + ++  G   ++ NA++ +Y KC S   
Sbjct: 232 NVKPNGITMVGVLSACAKKSDFEFG-RWVHSYIERNRIGESLTLSNAMLDMYTKCGS--- 287

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
                 +  A+R+FD+MPE+D +SWTTM+ GY K    DAA+   D M      AWNALI
Sbjct: 288 ------VEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALI 341

Query: 264 SGYVH----RELKMLMLRIQL------DEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
           S Y      +E   L   +QL      DE T  S +SACA  G   LG  +H Y+ +   
Sbjct: 342 SAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGM 401

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
           K     +  +  +L+ +Y KCG + +A  +F+ +  +D+  W+A+               
Sbjct: 402 K----LNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAM--------------- 442

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
                           I+GLA +G+G++ + LFS+M+ +  KP    F   + +C+ +G 
Sbjct: 443 ----------------IAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGL 486

Query: 434 LENGRQLHAQL-VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMI 491
           +E GR    Q+ +  G    +     ++ +  R G++E A  +   MP   + S W A++
Sbjct: 487 VEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALL 546

Query: 492 AALGQHGNGARAIELYEQMLK 512
            A   H N   A +   Q+++
Sbjct: 547 GACTIHENVVLAEQACSQLIE 567



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 117/475 (24%), Positives = 197/475 (41%), Gaps = 107/475 (22%)

Query: 165 EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERD 224
           E KQ  Q+H  +++  TGLF    +A   +      SPF S    +  A++VFD++P  +
Sbjct: 47  ETKQLKQIHAQMLR--TGLFFDPFSA-SRLITAAALSPFPS----LDYAQQVFDQIPHPN 99

Query: 225 ELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQL---- 280
             +W T++  Y                            S   H+ L + +  +      
Sbjct: 100 LYTWNTLIRAYAS--------------------------SSNPHQSLLIFLRMLHQSPDF 133

Query: 281 -DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            D+FT+  +I A +       GK  H  +++          + + N+L+  Y KCG++  
Sbjct: 134 PDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGS----DVFILNSLIHFYAKCGELGL 189

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
              +F  +P RD+VSWN++++A+V  G  +EA                            
Sbjct: 190 GYRVFVNIPRRDVVSWNSMITAFVQGGCPEEA---------------------------- 221

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
              L+LF +M  +  KP      G +++CA     E GR +H+ +  +    SL+  NA+
Sbjct: 222 ---LELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAM 278

Query: 460 ITMYARCGVVE-------------------------------AANCVFNTMPNVDSVSWN 488
           + MY +CG VE                               AA  +F+ MPN D  +WN
Sbjct: 279 LDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWN 338

Query: 489 AMIAALGQHGNGARAIELYEQM-LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
           A+I+A  Q G    A+EL+ ++ L +   PD +T ++ LSAC   G +  G  +      
Sbjct: 339 ALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLG-GWIHVYIK 397

Query: 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
             G+          ID+ C+ G   +A  V  S+  K    +W A++AG  +HG+
Sbjct: 398 KQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERK-DVFVWSAMIAGLAMHGH 451



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 155/352 (44%), Gaps = 28/352 (7%)

Query: 308 LLRTEAKPTPE-FSLPVNN-------ALVTLYWKCGKVNEARDIFNQMPER----DLVSW 355
           L R+ + PTP   S+ +NN         ++L  +C +  + + I  QM       D  S 
Sbjct: 11  LPRSHSLPTPNPNSITLNNDRYFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSA 70

Query: 356 NAILSAYVSAGL--IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
           + +++A   +    +D A+ +F+ +   NL +W  +I   A +    + L +F +M  + 
Sbjct: 71  SRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQS 130

Query: 414 FK-PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
              P  + F   I + + L  L  G+  H  ++     S +   N+LI  YA+CG +   
Sbjct: 131 PDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLG 190

Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
             VF  +P  D VSWN+MI A  Q G    A+EL+++M  + + P+ IT + VLSAC   
Sbjct: 191 YRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKK 250

Query: 533 GLVKEGR---RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
              + GR    Y E       I          +D+  + G   +AK + D +P K     
Sbjct: 251 SDFEFGRWVHSYIERNR----IGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVS- 305

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHH-AGTYVLLSNMYANLGRWDDA 640
           W  +L G    G  D    AA+ +F  MP+     +  L + Y   G+  +A
Sbjct: 306 WTTMLVGYAKIGEYD----AAQGIFDAMPNQDIAAWNALISAYEQCGKPKEA 353



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 143/331 (43%), Gaps = 39/331 (11%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
             R VH+++  +       + N ++D+Y K   +  A+ LFD++P+ DIV+ TT++  Y+
Sbjct: 255 FGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYA 314

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMR-RDDVKPDNFT 151
                  A+ +F+  P   +D   +NA+I+AY        A+ELF +++     KPD  T
Sbjct: 315 KIGEYDAAQGIFDAMP--NQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVT 372

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             S LSA A +   +     +H  + K G  L   +  +LI +Y KC           + 
Sbjct: 373 LVSTLSACAQLGAMDLGGW-IHVYIKKQGMKLNCHLTTSLIDMYCKCGD---------LQ 422

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A  VF  +  +D   W+ M+ G   + +   A      M E+                 
Sbjct: 423 KALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQED----------------- 465

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                +++ +  T+T+++ AC++ GL   G+    +  + E        +     +V + 
Sbjct: 466 -----KVKPNAVTFTNILCACSHVGLVEEGR---TFFNQMELVYGVLPGVKHYACMVDIL 517

Query: 332 WKCGKVNEARDIFNQMPERDLVS-WNAILSA 361
            + G + EA ++  +MP     S W A+L A
Sbjct: 518 GRAGLLEEAVELIEKMPMAPAASVWGALLGA 548


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 286/729 (39%), Positives = 416/729 (57%), Gaps = 68/729 (9%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           +P+++     I A+  +  V  A  +F   P   R T  YNAM+  YS N     A  LF
Sbjct: 35  EPEVIRSNKAITAHMRAGRVADAERLFAAMP--RRSTSTYNAMLAGYSANGRLPLAASLF 92

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           R + R    PDN+++ ++L ALA+             + +    GLF  +       Y  
Sbjct: 93  RAIPR----PDNYSYNTLLHALAV------------SSSLADARGLFDEMPVRDSVTYNV 136

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
            +SS   ++  L+  AR  FD  PE+D +SW  M+  YV+N  ++ AR   +  +E   +
Sbjct: 137 MISSH--ANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVI 194

Query: 258 AWNALISGYVH-------REL-----------------------KMLMLRIQLDE----- 282
           +WNAL+SGYV        REL                        M+  R   D      
Sbjct: 195 SWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRD 254

Query: 283 -FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEAR 341
            FT+T+V+S  A +G+    ++V   +        PE +    NA+V  Y +   ++EA+
Sbjct: 255 VFTWTAVVSGYAQNGMLEEARRVFDAM--------PERNAVSWNAMVAAYIQRRMMDEAK 306

Query: 342 DIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEE 401
           ++FN MP R++ SWN +L+ Y  AG+++EAK++F+ M +++ +SW  M++  +Q G  EE
Sbjct: 307 ELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEE 366

Query: 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALIT 461
            L+LF +M   G      AFA  +++CA + ALE G QLH +L+ +GY      GNAL+ 
Sbjct: 367 TLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLA 426

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           MY +CG +E A   F  M   D VSWN MIA   +HG G  A+E+++ M      PD IT
Sbjct: 427 MYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDIT 486

Query: 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581
            + VL+AC+H+GLV++G  YF +MH  +G+    +HY   IDLL RAG+ +EA D++  +
Sbjct: 487 LVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDM 546

Query: 582 PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAA 641
           PF+P + +W ALL   RIH N +LG  AAE++F+L P +AG YVLLSN+YA+ G+W DA 
Sbjct: 547 PFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDAR 606

Query: 642 RVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVP 701
           ++R +M +RGVKK PG SWIEV NKVH F   D  HPE + +Y +LE L + M+K GYV 
Sbjct: 607 KMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVS 666

Query: 702 DTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFK--- 758
            T  VLHD+E ++KE+ L  HSEKLAVA+G++ +P G  +RV+KNLR+CGDCHNAFK   
Sbjct: 667 ATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKAWI 726

Query: 759 -FMSKVVGR 766
             M KV GR
Sbjct: 727 ELMLKVSGR 735



 Score = 47.4 bits (111), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 5/120 (4%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           +H  +I +G+     + N L+ +Y K   +  AR  F+E+ + D+V+  T+IA Y+    
Sbjct: 405 LHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGF 464

Query: 97  VKLAREMFN--KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD---DVKPDNFT 151
            K A E+F+  +T     D +    ++ A SH+      I  F  M  D     KP+++T
Sbjct: 465 GKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYT 524


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 282/784 (35%), Positives = 430/784 (54%), Gaps = 68/784 (8%)

Query: 27  NPITSSLA--RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVAR 84
           N  T+SL+  R  HAH++ +G     H+  +L+  Y  ++    A  + D +P+P++ + 
Sbjct: 23  NSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSF 82

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           +TLI A+S           F++                        H A+  F  M    
Sbjct: 83  STLIYAFSK----------FHQF-----------------------HHALSTFSQMLTRG 109

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           + PDN    S + A A +    K   Q+H     SG    + V ++L+ +Y+KC      
Sbjct: 110 LMPDNRVLPSAVKACAGL-SALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKC------ 162

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD-----GMSENVGVAW 259
              + +  A RVFD M E D +SW+ ++  Y +   +D A+         G+  N+ ++W
Sbjct: 163 ---NQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNL-ISW 218

Query: 260 NALISGYVHR----ELKMLMLRIQLDEF-----TYTSVISACANSGLFRLGKQVHAYLLR 310
           N +I+G+ H     E  ++ L + L  F     T +SV+ A  +     +G  +H Y+++
Sbjct: 219 NGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIK 278

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
                       V++AL+ +Y KC   +E   +F+QM   D+ S NA +      G ++ 
Sbjct: 279 QGLVSDK----CVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVES 334

Query: 371 AKSLFEAMR----ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
           +  LF  ++    E N++SWT MI+  +QNG   E L+LF +M++ G KP        + 
Sbjct: 335 SLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLP 394

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
           +C  + AL +G+  H   +  G  + +  G+ALI MYA+CG ++A+   F+ +P  + V 
Sbjct: 395 ACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVC 454

Query: 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546
           WNA+IA    HG    A+E+++ M + G  PD I+F  VLSAC+ +GL +EG  YF +M 
Sbjct: 455 WNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMS 514

Query: 547 GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLG 606
             YGI    +HYA  + LL RAGK  +A  +I  +P  P A +W ALL+ CR+H N+ LG
Sbjct: 515 SKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLG 574

Query: 607 IQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNK 666
             AAE+LF+L P + G Y+LLSN+YA+ G W++  RVR +M+++G++K PGCSWIEV NK
Sbjct: 575 EVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNK 634

Query: 667 VHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKL 726
           VH+ L  D +HP+   + + L++L +EM+KLGY P+  FVL D+E   KE  L  HSEKL
Sbjct: 635 VHMLLAGDKSHPQMTQIIEKLDKLSMEMKKLGYFPEINFVLQDVEEQDKEQILCGHSEKL 694

Query: 727 AVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSC 786
           AV FGL+  P G  ++V+KNLRICGDCH   KF+S    REI VRD  RFHHF++G CSC
Sbjct: 695 AVVFGLLNTPPGYPLQVIKNLRICGDCHVVIKFISSFERREIFVRDTNRFHHFKEGACSC 754

Query: 787 GDYW 790
           GDYW
Sbjct: 755 GDYW 758


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  520 bits (1338), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 275/744 (36%), Positives = 423/744 (56%), Gaps = 83/744 (11%)

Query: 52  IINRLI--DIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPL 109
           + +R++   ++C+ +K  +           D+   T+L+  Y  +++V+    +F++  +
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVE---------DVSVGTSLVDMYMKTESVEDGERVFDE--M 153

Query: 110 KMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC 169
           ++++ V + +++  Y  N     A++LF  M+ + +KP+ FTF +VL  LA     EK  
Sbjct: 154 RVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKG- 212

Query: 170 MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA-ARRVFDEMPERDELSW 228
           +Q+H  V+KSG      V N+++++Y          S+SLM + A+ VFD M  R+ +SW
Sbjct: 213 VQVHTMVIKSGLDSTIFVGNSMVNMY----------SKSLMVSDAKAVFDSMENRNAVSW 262

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSV 288
            +M+ G+V N     A E                         +M +  ++L +  + +V
Sbjct: 263 NSMIAGFVTNGLDLEAFELF----------------------YRMRLEGVKLTQTIFATV 300

Query: 289 ISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
           I  CAN       KQ+H  ++    K   +F L +  AL+  Y KC ++++A  +F  M 
Sbjct: 301 IKLCANIKEMSFAKQLHCQVI----KNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMH 356

Query: 349 E-RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
             +++VSW AI+S YV  G  D A +LF  MR                            
Sbjct: 357 GVQNVVSWTAIISGYVQNGRTDRAMNLFCQMR---------------------------- 388

Query: 408 QMRLEGFKPCDYAFAGAITSCAG-LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
             R EG +P ++ F+  + +CA    ++E G+Q H+  + SG+ ++L   +AL+TMYA+ 
Sbjct: 389 --REEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKR 446

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G +E+AN VF    + D VSWN+MI+   QHG G ++++++E+M  + +  D ITF+ V+
Sbjct: 447 GNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVI 506

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
           SAC HAGLV EG+RYF+ M   Y I P  +HY+  +DL  RAG   +A D+I+ +PF   
Sbjct: 507 SACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAG 566

Query: 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKL 646
           A IW  LLA CR+H N+ LG  AAE+L  L P  +  YVLLSN+YA  G W + A+VRKL
Sbjct: 567 ATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKL 626

Query: 647 MRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFV 706
           M  + VKKE G SWIEV NK   F+  D +HP++  +Y  LE+L + ++  GY PDTK+V
Sbjct: 627 MDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYV 686

Query: 707 LHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGR 766
           LHD+E + KE  LS HSE+LA+AFGL+  P G  ++++KNLR+CGDCH   K +SK+ GR
Sbjct: 687 LHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGR 746

Query: 767 EIVVRDGKRFHHFRDGKCSCGDYW 790
           +IVVRD  RFHHF+ G CSCGDYW
Sbjct: 747 DIVVRDSNRFHHFKGGSCSCGDYW 770



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 128/504 (25%), Positives = 225/504 (44%), Gaps = 72/504 (14%)

Query: 100 AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL 159
           ++++F++TP   +     N ++  +S N     A+ LF  +RR     D  + + VL   
Sbjct: 45  SQQLFDETP--QQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVC 102

Query: 160 ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDE 219
             + +      Q+HC  +K G     SV  +L+ +Y+K  S         +    RVFDE
Sbjct: 103 GCLFDRIVG-KQVHCQCIKCGFVEDVSVGTSLVDMYMKTES---------VEDGERVFDE 152

Query: 220 MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQ 279
           M  ++ +SWT+++ GY +N   + A +                         +M +  I+
Sbjct: 153 MRVKNVVSWTSLLAGYRQNGLNEQALKLFS----------------------QMQLEGIK 190

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            + FT+ +V+   A  G    G QVH  ++++    T    + V N++V +Y K   V++
Sbjct: 191 PNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDST----IFVGNSMVNMYSKSLMVSD 246

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
           A+ +F+ M  R+ VSWN++++ +V+ GL  EA                            
Sbjct: 247 AKAVFDSMENRNAVSWNSMIAGFVTNGLDLEA---------------------------- 278

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
               +LF +MRLEG K     FA  I  CA +  +   +QLH Q++ +G D  L+   AL
Sbjct: 279 ---FELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTAL 335

Query: 460 ITMYARCGVVEAANCVFNTMPNVDS-VSWNAMIAALGQHGNGARAIELYEQMLK-EGILP 517
           +  Y++C  ++ A  +F  M  V + VSW A+I+   Q+G   RA+ L+ QM + EG+ P
Sbjct: 336 MVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEP 395

Query: 518 DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577
           +  TF +VL+AC       E  + F +     G        +  + +  + G    A +V
Sbjct: 396 NEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEV 455

Query: 578 IDSLPFKPSAPIWEALLAGCRIHG 601
                 +     W ++++G   HG
Sbjct: 456 FKRQVDRDLVS-WNSMISGYAQHG 478



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 150/324 (46%), Gaps = 43/324 (13%)

Query: 45  GFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQP----DIVARTTLIAAYSASDNVKLA 100
           G K  + I   +I +     ++ +A+ L  ++ +     D+  +T L+ AYS    +  A
Sbjct: 289 GVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDA 348

Query: 101 REMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD-VKPDNFTFTSVLSAL 159
            ++F      +++ V + A+I+ Y  N     A+ LF  MRR++ V+P+ FTF+SVL+A 
Sbjct: 349 FKLFCMMH-GVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNAC 407

Query: 160 ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDE 219
           A      +Q  Q H   +KSG      V +AL+++Y K         R  + +A  VF  
Sbjct: 408 AAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAK---------RGNIESANEVFKR 458

Query: 220 MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQ 279
             +RD +SW +M++GY ++     + +  + M                          ++
Sbjct: 459 QVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSK----------------------NLE 496

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRT-EAKPTPEFSLPVNNALVTLYWKCGKVN 338
           LD  T+  VISAC ++GL   G++    +++     PT E      + +V LY + G + 
Sbjct: 497 LDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHY----SCMVDLYSRAGMLE 552

Query: 339 EARDIFNQMP-ERDLVSWNAILSA 361
           +A D+ N+MP       W  +L+A
Sbjct: 553 KAMDLINKMPFPAGATIWRTLLAA 576



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 120/246 (48%), Gaps = 5/246 (2%)

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
           ++ LF+   ++ L     ++   ++N   +E L LF  +R  G      + +  +  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
           L     G+Q+H Q +  G+   +S G +L+ MY +   VE    VF+ M   + VSW ++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
           +A   Q+G   +A++L+ QM  EGI P+  TF  VL      G V++G +   TM    G
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKSG 223

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
           +          +++  ++   S+AK V DS+  + +A  W +++AG   +G   L ++A 
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENR-NAVSWNSMIAGFVTNG---LDLEAF 279

Query: 611 EQLFQL 616
           E  +++
Sbjct: 280 ELFYRM 285


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 266/715 (37%), Positives = 411/715 (57%), Gaps = 68/715 (9%)

Query: 78  QPDIVARTTLIAAY-SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
           Q D+     LI  +     ++  A ++F K P   R+ V +  MIT          AI+L
Sbjct: 201 QSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMP--ERNAVTWTLMITRLMQFGYAGEAIDL 258

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           F DM     +PD FT + V+SA A + E      Q+H   ++ G  L   V   LI++Y 
Sbjct: 259 FLDMIFSGYEPDRFTLSGVISACANM-ELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYA 317

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV-KNDYLDAAREFLDGMSENV 255
           KC      S    M AAR++FD++ + +  SWT M+TGYV K  Y + A +   GM    
Sbjct: 318 KC------SVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGM---- 367

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                             ++  +  + FT++S + ACAN    R+G+QV  + ++     
Sbjct: 368 ------------------ILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVK----- 404

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
                    N +                            N+++S Y  +G ID+A+  F
Sbjct: 405 ---LGFSSVNCVA---------------------------NSLISMYARSGRIDDARKAF 434

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
           + + E+NL+S+  +I   A+N   EE L+LF+++  +G     + FA  ++  A +G + 
Sbjct: 435 DILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIG 494

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            G Q+HA+++ SG   + S  NALI+MY+RCG +E+A  VF  M + + +SW ++I    
Sbjct: 495 KGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFA 554

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
           +HG   +A+EL+ +ML+EG+ P+ +T++ VLSAC+H GLV EG ++F++M+  +G+ P  
Sbjct: 555 KHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRM 614

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
           +HYA  +D+L R+G  SEA   I+S+P+K  A +W   L  CR+HGN++LG  AA+ + +
Sbjct: 615 EHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIE 674

Query: 616 LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
             PH    Y+LLSN+YA++ +WD+ + +RK M+++ + KE GCSW+EV+NKVH F V DT
Sbjct: 675 QEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGDT 734

Query: 676 AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKL 735
           +HP+A  +Y  L+ L ++++KLGYVP+  FVLHD+E +QKE  L  HSEK+AVAFGL+  
Sbjct: 735 SHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLIST 794

Query: 736 PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
                +RV KNLRICGDCH+A K++S   GREI+VRD  RFHH +DG+CSC +YW
Sbjct: 795 SKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  176 bits (445), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 153/625 (24%), Positives = 263/625 (42%), Gaps = 120/625 (19%)

Query: 27  NPITSSLARSVH-----------AHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           NP+T  L + ++            HM+  G  P     +  +    ++        + ++
Sbjct: 32  NPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEK 91

Query: 76  IPQPDI----VARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           + Q D+    V   +LI+ YS     + A  +F +     RD + ++AM++ +++N+ G 
Sbjct: 92  LTQSDLQLDSVTLNSLISLYSKCGQWEKATSIF-RLMGSSRDLISWSAMVSCFANNNMGF 150

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
            A+  F DM  +   P+ + F +   A +                    T  F SV +++
Sbjct: 151 RALLTFVDMIENGYYPNEYCFAAATRACS--------------------TAEFVSVGDSI 190

Query: 192 ISVYVK--------CVSSP----FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND 239
               +K        CV       FV  R  + +A +VF++MPER+ ++WT M+T  ++  
Sbjct: 191 FGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFG 250

Query: 240 YLDAARE-FLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLF 298
           Y   A + FLD            + SGY            + D FT + VISACAN  L 
Sbjct: 251 YAGEAIDLFLD-----------MIFSGY------------EPDRFTLSGVISACANMELL 287

Query: 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC---GKVNEARDIFNQMPERDLVSW 355
            LG+Q+H+  +R            V   L+ +Y KC   G +  AR IF+Q+ + ++ SW
Sbjct: 288 LLGQQLHSQAIRHGLT----LDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSW 343

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
            A+++ YV  G                              GY EE L LF  M L    
Sbjct: 344 TAMITGYVQKG------------------------------GYDEEALDLFRGMILTHVI 373

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P  + F+  + +CA L AL  G Q+    V  G+ S     N+LI+MYAR G ++ A   
Sbjct: 374 PNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKA 433

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           F+ +   + +S+N +I A  ++ N   A+EL+ ++  +G+     TF ++LS     G +
Sbjct: 434 FDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTI 493

Query: 536 KEGRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592
            +G    E +H      G+   +      I +  R G    A  V + +  + +   W +
Sbjct: 494 GKG----EQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDR-NVISWTS 548

Query: 593 LLAGCRIHGNIDLGIQAAEQLFQLM 617
           ++ G   HG      QA E   +++
Sbjct: 549 IITGFAKHG---FATQALELFHKML 570



 Score =  107 bits (266), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 152/347 (43%), Gaps = 71/347 (20%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           ++S L+ C   N     +   V  H +  GF     + N LI +Y +S ++  AR  FD 
Sbjct: 379 FSSTLKAC--ANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDI 436

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           + + ++++  T+I AY+ + N                                    A+E
Sbjct: 437 LFEKNLISYNTVIDAYAKNLN---------------------------------SEEALE 463

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LF ++    +    FTF S+LS  A I    K   Q+H  V+KSG  L  SV NALIS+Y
Sbjct: 464 LFNEIEDQGMGASAFTFASLLSGAASIGTIGKG-EQIHARVIKSGLKLNQSVCNALISMY 522

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            +C +         + +A +VF++M +R+ +SWT+++TG+ K+ +   A E         
Sbjct: 523 SRCGN---------IESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFH------ 567

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                           KML   ++ +E TY +V+SAC++ GL   G + H   + TE   
Sbjct: 568 ----------------KMLEEGVRPNEVTYIAVLSACSHVGLVNEGWK-HFKSMYTEHGV 610

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
            P   +     +V +  + G ++EA    N MP + D + W   L A
Sbjct: 611 IPR--MEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGA 655


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 290/796 (36%), Positives = 439/796 (55%), Gaps = 71/796 (8%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
           N ++  Y ++  +  AR LFD +P  D+ +  T++  Y  S  ++ AR +F + P   R+
Sbjct: 130 NAMVTCYVQNGDITLARKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMP--ERN 187

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMH 173
            V +  MI+ Y        A ++FR M  + + P+     SVLSA+  +  +      +H
Sbjct: 188 GVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHL-GKPGILESIH 246

Query: 174 CTVVKSGTGLFTSVLNALISVYVKCVS--------------------------------- 200
             V K+G      V  A+++ Y K V+                                 
Sbjct: 247 VLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRI 306

Query: 201 ---------SPF--VSSRS--LMGAARR--------VFDEMPERDELSWTTMMTGYVKND 239
                     P   V SR+  L G AR         +FD++ E + +SW  M+TGY++N+
Sbjct: 307 DDAFAVYQRDPLKSVPSRTSMLTGLARYGRIDDAKILFDQIHEPNVVSWNAMITGYMQNE 366

Query: 240 YLDAAREFLDGMSENVGVAWNALISGYVHR---ELKMLMLR------IQLDEFTYTSVIS 290
            +D A +  + M     ++W  +I+GY      E  ++ L+      +     + TS   
Sbjct: 367 MVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFF 426

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           AC+N      GKQVH+  +    K   +F+  V NAL+TLY K   +   R IF++M  +
Sbjct: 427 ACSNIEALETGKQVHSLAV----KAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVK 482

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           D VS+N+ +SA V   L DEA+ +F  M   +++SWT +IS  AQ   G E +++F  M 
Sbjct: 483 DTVSYNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSML 542

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
            E   P        +     LGA + G+Q+H   +  G DS L   NAL++MY +C   +
Sbjct: 543 HERELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSSAD 602

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
           +   VF++M   D  +WN +I    QHG G  AI +Y+ M+  G+LP+ +TF+ +L AC+
Sbjct: 603 SLK-VFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACS 661

Query: 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590
           H+GLV EG ++F++M   YG+ P  +HYA  +DLL RAG    A+  I  +P +P + IW
Sbjct: 662 HSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIW 721

Query: 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650
            ALL  C+IH N+++G +AAE+LF + P +AG YV+LSN+Y++ G WD+ A+VRKLM++R
Sbjct: 722 SALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKER 781

Query: 651 GVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDM 710
           GV K+PGCSW+++ NK+H F+  D  H + Q +Y  L +L   ++  GYVPDT FVLHD+
Sbjct: 782 GVNKDPGCSWMQIKNKMHSFVTGDEEHEQIQNIYATLWELYTLLKATGYVPDTDFVLHDI 841

Query: 711 ESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVV 770
           + +QKE +L  HSEKLAVA+GL+  P G  ++++KNLRICGDCH   KF+S V  REI V
Sbjct: 842 DEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIKFVSSVTKREIDV 901

Query: 771 RDGKRFHHFRDGKCSC 786
           RDG RFHHFR+G CSC
Sbjct: 902 RDGNRFHHFRNGSCSC 917



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 144/543 (26%), Positives = 238/543 (43%), Gaps = 108/543 (19%)

Query: 79  PDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFR 138
           P   A++  I        +  ARE+F+  P   RD + +N+MI AY +N    A   L  
Sbjct: 31  PGTSAQSARIRELGRLGRLHEAREVFDSMPF--RDIIAWNSMIFAYCNNGMPDAGRSL-- 86

Query: 139 DMRRDDVKPDNF-TFTSVLSALALI--VEEEKQCMQMHCTVVKSGTGLFTSV-LNALISV 194
               D +   N  T T +LS  A    V + ++        V  G G+  +V  NA+++ 
Sbjct: 87  ---ADAISGGNLRTGTILLSGYARAGRVRDARR--------VFDGMGVRNTVAWNAMVTC 135

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           YV+            +  AR++FD MP RD  SW TM+TGY  +  ++ AR   + M E 
Sbjct: 136 YVQ---------NGDITLARKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPER 186

Query: 255 VGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
            GV+W  +ISGYV  E           ML   +  ++    SV+SA  + G   + + +H
Sbjct: 187 NGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIH 246

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWK-------------------------------- 333
             + +T      E  + V  A++  Y K                                
Sbjct: 247 VLVHKTGF----ERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQ 302

Query: 334 CGKVNEA-----RDIFNQMPER--------------------------DLVSWNAILSAY 362
            G++++A     RD    +P R                          ++VSWNA+++ Y
Sbjct: 303 AGRIDDAFAVYQRDPLKSVPSRTSMLTGLARYGRIDDAKILFDQIHEPNVVSWNAMITGY 362

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
           +   ++DEA+ LF  M  RN +SW  MI+G A+NG  E+ L     +  +G  P   +  
Sbjct: 363 MQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLT 422

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
            +  +C+ + ALE G+Q+H+  V +G   +    NALIT+Y +   + +   +F+ M   
Sbjct: 423 SSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVK 482

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
           D+VS+N+ ++AL Q+     A +++  M      PD +++ T++SAC  A    E    F
Sbjct: 483 DTVSYNSFMSALVQNNLFDEARDVFNNMPS----PDVVSWTTIISACAQADQGNEAVEIF 538

Query: 543 ETM 545
            +M
Sbjct: 539 RSM 541



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 107/402 (26%), Positives = 182/402 (45%), Gaps = 45/402 (11%)

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           AR VFD MP RD ++W +M+  Y  N   DA R   D +S         L+SGY      
Sbjct: 52  AREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLRTGTILLSGY------ 105

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                               A +G  R  ++V   +     + T  +     NA+VT Y 
Sbjct: 106 --------------------ARAGRVRDARRVFDGM---GVRNTVAW-----NAMVTCYV 137

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           + G +  AR +F+ MP RD+ SWN +L+ Y  + L++EA++LFE M ERN +SWTVMISG
Sbjct: 138 QNGDITLARKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISG 197

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
                       +F  M  EG  P        +++   LG       +H  +  +G++  
Sbjct: 198 YVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERD 257

Query: 453 LSAGNALITMYAR-CGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
           +  G A++  Y +   ++++A   F  M   +  +W+ +IAAL Q G    A  +Y++  
Sbjct: 258 VVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDP 317

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571
            + + P R + LT L+     G + + +  F+ +H P  +      +   I    +    
Sbjct: 318 LKSV-PSRTSMLTGLA---RYGRIDDAKILFDQIHEPNVVS-----WNAMITGYMQNEMV 368

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
            EA+D+ + +PF+ +   W  ++AG   +G  +  + + + L
Sbjct: 369 DEAEDLFNRMPFRNTIS-WAGMIAGYARNGRSEQALVSLQAL 409



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 143/311 (45%), Gaps = 56/311 (18%)

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           + G+++EAR++F+ MP RD+++WN+++ AY + G+ D  +SL +A+   NL + T+++SG
Sbjct: 45  RLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLRTGTILLSG 104

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
            A+ G   +  ++F  M +        A+   +T     G +   R+L   +        
Sbjct: 105 YARAGRVRDARRVFDGMGVRN----TVAWNAMVTCYVQNGDITLARKLFDAMP----SRD 156

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA---LGQHGNGARAIELYEQ 509
           +S+ N ++T Y    ++E A  +F  MP  + VSW  MI+    + QHG   RA +++  
Sbjct: 157 VSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHG---RAWDMFRT 213

Query: 510 MLKEGILPDRITFLTVLSACNHAG------------------------------------ 533
           ML EG+ P++   ++VLSA  H G                                    
Sbjct: 214 MLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVN 273

Query: 534 LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEAL 593
           ++    ++FE M         E  ++  I  L +AG+  +A  V    P K S P   ++
Sbjct: 274 MLDSAVKFFEGMAA-----RNEYTWSTIIAALSQAGRIDDAFAVYQRDPLK-SVPSRTSM 327

Query: 594 LAGCRIHGNID 604
           L G   +G ID
Sbjct: 328 LTGLARYGRID 338



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 148/329 (44%), Gaps = 39/329 (11%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + VH+  + +G +   ++ N LI +Y K   +   R +FD +   D V+  + ++A   
Sbjct: 437 GKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQ 496

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
           ++    AR++FN  P    D V +  +I+A +    G+ A+E+FR M  +   P N    
Sbjct: 497 NNLFDEARDVFNNMPSP--DVVSWTTIISACAQADQGNEAVEIFRSMLHERELP-NPPIL 553

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           ++L  L+  +   +   Q+H   +K G      V NAL+S+Y KC S+  +         
Sbjct: 554 TILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSSADSL--------- 604

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
            +VFD M ERD  +W T++TGY ++           G+       +  ++S  V      
Sbjct: 605 -KVFDSMEERDIFTWNTIITGYAQH-----------GLGREAIRMYQLMVSAGV------ 646

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
                  +E T+  ++ AC++SGL   G Q     + ++   TP   L     +V L  +
Sbjct: 647 -----LPNEVTFVGLLHACSHSGLVDEGHQFFKS-MSSDYGLTP--LLEHYACMVDLLGR 698

Query: 334 CGKVNEARDIFNQMP-ERDLVSWNAILSA 361
            G V  A      MP E D V W+A+L A
Sbjct: 699 AGDVQGAEHFIYDMPIEPDSVIWSALLGA 727


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 293/783 (37%), Positives = 432/783 (55%), Gaps = 78/783 (9%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF 73
            R+   L+ C     +++   +S+H+  I S   P  +  N  I +Y K  +L +AR  F
Sbjct: 9   QRFRHLLKTCIAERDLST--GKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAF 66

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
            +I  P++ +   +IAAY+      +A ++F++ P    D V YN +I+AY+       A
Sbjct: 67  QDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEP--DLVSYNTLISAYADCGETAPA 124

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
           + LF  MR   +  D FT ++V++A     ++     Q+H   V SG   + SV NAL++
Sbjct: 125 LGLFSGMREMGLDMDGFTLSAVITACC---DDVGLIGQLHSVAVSSGFDSYVSVNNALLT 181

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPE-RDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
            Y K            +  A+RVF  M   RDE+SW +M+  Y ++     A      M 
Sbjct: 182 YYGK---------NGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEM- 231

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
                         V R L        +D FT  SV++A         G Q H  L++T 
Sbjct: 232 --------------VRRGL-------NVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTG 270

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
                     V + L+ LY KCG                              G + + +
Sbjct: 271 FHQNSH----VGSGLIDLYSKCG------------------------------GGMSDCR 296

Query: 373 SLFEAMRERNLLSWTVMISGLAQNG-YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
            +FE + E +L+ W  M+SG +QN  + E+ L+ F QM+  G++P D +F   I++C+ L
Sbjct: 297 KVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNL 356

Query: 432 GALENGRQLHAQLVHSGYDSS-LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
            +   G+Q+H+  + S   S+ +S  NALI MY++CG ++ A  +F+ M   ++VS N+M
Sbjct: 357 SSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSM 416

Query: 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
           IA   QHG    ++ L++ ML+  I P  ITF++VLSAC H G V+EG  YF  M   + 
Sbjct: 417 IAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFN 476

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
           I P  +HY+  IDLL RAGK SEA+++I  +PF P +  W +LL  CR HGNI+L ++AA
Sbjct: 477 IEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAA 536

Query: 611 EQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVF 670
            Q+ QL P +A  YV+LSNMYA+ GRW++ A VRK MRDRGVKK+PGCSWIEV  ++HVF
Sbjct: 537 NQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVF 596

Query: 671 LVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVL---HDMESDQKEYALSTHSEKLA 727
           + +D++HP  + +Y++LE++  +M++ GYVPD ++ L         +KE  L  HSEKLA
Sbjct: 597 VAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLA 656

Query: 728 VAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCG 787
           VAFGL+    G  V V+KNLRICGDCHNA KF+S + GREI VRD  RFH F++G+CSCG
Sbjct: 657 VAFGLISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCG 716

Query: 788 DYW 790
           DYW
Sbjct: 717 DYW 719


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 293/783 (37%), Positives = 432/783 (55%), Gaps = 78/783 (9%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF 73
            R+   L+ C     +++   +S+H+  I S   P  +  N  I +Y K  +L +AR  F
Sbjct: 9   QRFRHLLKTCIAERDLST--GKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAF 66

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
            +I  P++ +   +IAAY+      +A ++F++ P    D V YN +I+AY+       A
Sbjct: 67  QDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEP--DLVSYNTLISAYADCGETAPA 124

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
           + LF  MR   +  D FT ++V++A     ++     Q+H   V SG   + SV NAL++
Sbjct: 125 LGLFSGMREMGLDMDXFTLSAVITACC---DDVGLIGQLHSVAVSSGFDSYVSVNNALLT 181

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPE-RDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
            Y K            +  A+RVF  M   RDE+SW +M+  Y ++     A      M 
Sbjct: 182 YYGK---------NGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEM- 231

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
                         V R L        +D FT  SV++A         G Q H  L++T 
Sbjct: 232 --------------VRRGL-------NVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTG 270

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
                     V + L+ LY KCG                              G + + +
Sbjct: 271 FHQNSH----VGSGLIDLYSKCG------------------------------GGMSDCR 296

Query: 373 SLFEAMRERNLLSWTVMISGLAQNG-YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
            +FE + E +L+ W  M+SG +QN  + E+ L+ F QM+  G++P D +F   I++C+ L
Sbjct: 297 KVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNL 356

Query: 432 GALENGRQLHAQLVHSGYDSS-LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
            +   G+Q+H+  + S   S+ +S  NALI MY++CG ++ A  +F+ M   ++VS N+M
Sbjct: 357 SSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSM 416

Query: 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
           IA   QHG    ++ L++ ML+  I P  ITF++VLSAC H G V+EG  YF  M   + 
Sbjct: 417 IAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFN 476

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
           I P  +HY+  IDLL RAGK SEA+++I  +PF P +  W +LL  CR HGNI+L ++AA
Sbjct: 477 IEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAA 536

Query: 611 EQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVF 670
            Q+ QL P +A  YV+LSNMYA+ GRW++ A VRK MRDRGVKK+PGCSWIEV  ++HVF
Sbjct: 537 NQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVF 596

Query: 671 LVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVL---HDMESDQKEYALSTHSEKLA 727
           + +D++HP  + +Y++LE++  +M++ GYVPD ++ L         +KE  L  HSEKLA
Sbjct: 597 VAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLA 656

Query: 728 VAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCG 787
           VAFGL+    G  V V+KNLRICGDCHNA KF+S + GREI VRD  RFH F++G+CSCG
Sbjct: 657 VAFGLISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCG 716

Query: 788 DYW 790
           DYW
Sbjct: 717 DYW 719


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 286/766 (37%), Positives = 411/766 (53%), Gaps = 92/766 (12%)

Query: 39  AHMISSGFKPREHIINRLIDIYCKSLKLVYARTL----FDEIPQPDIVARTTLIAAYSAS 94
             M S G  P +     L+D +     L   + +     +E    DI   T L+      
Sbjct: 218 GQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRC 277

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
            +V  A++ F    +  RD V YNA+I A + + +   A E +  MR D V  +  T+ S
Sbjct: 278 GDVDSAKQAFKG--IADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLS 335

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           +L+A +     E   + +H  + + G      + NALIS+Y +C   P          AR
Sbjct: 336 ILNACSTSKALEAGKL-IHSHISEDGHSSDVQIGNALISMYARCGDLP---------KAR 385

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
            +F  MP+RD +S                               WNA+I+GY  RE +  
Sbjct: 386 ELFYTMPKRDLIS-------------------------------WNAIIAGYARREDRGE 414

Query: 275 MLR---------IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
            +R         ++    T+  ++SACANS  +  GK +H  +LR+  K     +    N
Sbjct: 415 AMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLA----N 470

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
           AL+ +Y +CG + E                               A+++FE  + R+++S
Sbjct: 471 ALMNMYRRCGSLME-------------------------------AQNVFEGTQARDVIS 499

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
           W  MI+G AQ+G  E   KLF +M+ E  +P +  FA  ++ C    ALE G+Q+H ++ 
Sbjct: 500 WNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRIT 559

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIE 505
            SG    ++ GNALI MY RCG ++ A  VF+++ + D +SW AMI      G   +AIE
Sbjct: 560 ESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIE 619

Query: 506 LYEQMLKEGILP-DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
           L+ QM  EG  P D  TF ++LSACNHAGLV EG + F +M   YG+ P  +HY   + L
Sbjct: 620 LFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGL 679

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624
           L RA +F EA+ +I+ +PF P A +WE LL  CRIHGNI L   AA    +L   +   Y
Sbjct: 680 LGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVY 739

Query: 625 VLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVY 684
           +LLSN+YA  GRWDD A++R++M  RG++KEPG SWIEVDN +H F+  D +HPE   +Y
Sbjct: 740 ILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIY 799

Query: 685 KYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVL 744
             L++L +EM + GY PDT+ VLHD+    +E +L THSE+LA+A+GL+K P G  +R+ 
Sbjct: 800 AELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIRIF 859

Query: 745 KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KNLRICGDCH A KF+SK+VGREI+ RD  RFH F++GKCSC DYW
Sbjct: 860 KNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 905



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 159/602 (26%), Positives = 270/602 (44%), Gaps = 108/602 (17%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y + LQ C  +  +    A+ +HA M+ +G  P   + N LI++Y K   ++ A  +F E
Sbjct: 30  YVALLQNCTRKRLLPE--AKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKE 87

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P+ D+++  +LI+ Y        A++ F K                          A +
Sbjct: 88  MPRRDVISWNSLISCY--------AQQGFKKK-------------------------AFQ 114

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LF +M+     P+  T+ S+L+A     E E    ++H  ++K+G      V N+L+S+Y
Sbjct: 115 LFEEMQNAGFIPNKITYISILTACYSPAELENG-KKIHSQIIKAGYQRDPRVQNSLLSMY 173

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            KC   P          AR+VF  +  RD +S+ TM+  Y +  Y+         MS   
Sbjct: 174 GKCGDLP---------RARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSE- 223

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                                 I  D+ TY +++ A     +   GK++H    +   + 
Sbjct: 224 ---------------------GISPDKVTYINLLDAFTTPSMLDEGKRIH----KLTVEE 258

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
                + V  ALVT+  +CG V+ A+  F  + +RD+V +NA+++A              
Sbjct: 259 GLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAA-------------- 304

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
                            LAQ+G+  E  + + +MR +G       +   + +C+   ALE
Sbjct: 305 -----------------LAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALE 347

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            G+ +H+ +   G+ S +  GNALI+MYARCG +  A  +F TMP  D +SWNA+IA   
Sbjct: 348 AGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYA 407

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
           +  +   A+ LY+QM  EG+ P R+TFL +LSAC ++    +G+   E +    GI    
Sbjct: 408 RREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRS-GIKSNG 466

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
                 +++  R G   EA++V +    +     W +++AG   HG+     + A +LFQ
Sbjct: 467 HLANALMNMYRRCGSLMEAQNVFEGTQARDVIS-WNSMIAGHAQHGS----YETAYKLFQ 521

Query: 616 LM 617
            M
Sbjct: 522 EM 523



 Score =  202 bits (515), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 157/620 (25%), Positives = 278/620 (44%), Gaps = 120/620 (19%)

Query: 3   MKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCK 62
           M+NA +I      Y S L  C   +P      + +H+ +I +G++    + N L+ +Y K
Sbjct: 119 MQNAGFIPNKIT-YISILTAC--YSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGK 175

Query: 63  SLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
              L  AR +F  I                              +P   RD V YN M+ 
Sbjct: 176 CGDLPRARQVFAGI------------------------------SP---RDVVSYNTMLG 202

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALAL--IVEEEKQCMQMHCTVVKSG 180
            Y+  +     + LF  M  + + PD  T+ ++L A     +++E K+   +H   V+ G
Sbjct: 203 LYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKR---IHKLTVEEG 259

Query: 181 TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY 240
                 V  AL+++ V+C           + +A++ F  + +RD + +  ++    ++ +
Sbjct: 260 LNSDIRVGTALVTMCVRCGD---------VDSAKQAFKGIADRDVVVYNALIAALAQHGH 310

Query: 241 -LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFR 299
            ++A  ++    S+ V                        L+  TY S+++AC+ S    
Sbjct: 311 NVEAFEQYYRMRSDGVA-----------------------LNRTTYLSILNACSTSKALE 347

Query: 300 LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAIL 359
            GK +H+++    ++      + + NAL+++Y +CG + +AR++F  MP+RDL+SWNAI+
Sbjct: 348 AGKLIHSHI----SEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAII 403

Query: 360 SAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY 419
           + Y              A RE                    E ++L+ QM+ EG KP   
Sbjct: 404 AGY--------------ARREDR-----------------GEAMRLYKQMQSEGVKPGRV 432

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
            F   +++CA   A  +G+ +H  ++ SG  S+    NAL+ MY RCG +  A  VF   
Sbjct: 433 TFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGT 492

Query: 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
              D +SWN+MIA   QHG+   A +L+++M  E + PD ITF +VLS C +   ++ G+
Sbjct: 493 QARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGK 552

Query: 540 RYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           +    +HG     G+    +     I++  R G   +A++V  SL  +     W A++ G
Sbjct: 553 Q----IHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMS-WTAMIGG 607

Query: 597 CRIHGNIDLGIQAAEQLFQL 616
           C   G     ++A E  +Q+
Sbjct: 608 CADQGE---DMKAIELFWQM 624



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 156/338 (46%), Gaps = 40/338 (11%)

Query: 279 QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
           + D  TY +++  C    L    K++HA ++  EA   P+  L  +N L+ +Y KC  V 
Sbjct: 24  ETDRATYVALLQNCTRKRLLPEAKRIHAQMV--EAGVGPDIFL--SNLLINMYVKCRSVL 79

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGY 398
           +A  +F +MP RD++SWN+++S Y   G   +A  LFE M                QN  
Sbjct: 80  DAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEM----------------QNA- 122

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
                         GF P    +   +T+C     LENG+++H+Q++ +GY       N+
Sbjct: 123 --------------GFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNS 168

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           L++MY +CG +  A  VF  +   D VS+N M+    Q       + L+ QM  EGI PD
Sbjct: 169 LLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPD 228

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVI 578
           ++T++ +L A     ++ EG+R    +    G+          + +  R G    AK   
Sbjct: 229 KVTYINLLDAFTTPSMLDEGKR-IHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAF 287

Query: 579 DSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
             +  +    ++ AL+A    HG+    ++A EQ +++
Sbjct: 288 KGIADR-DVVVYNALIAALAQHGH---NVEAFEQYYRM 321



 Score = 47.0 bits (110), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 90/229 (39%), Gaps = 66/229 (28%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           +AS L  C  +NP    L + +H  +  SG +   ++ N LI++Y +   L  AR +F  
Sbjct: 535 FASVLSGC--KNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHS 592

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +                                 + RD + + AMI   +       AIE
Sbjct: 593 L---------------------------------QHRDVMSWTAMIGGCADQGEDMKAIE 619

Query: 136 LFRDMRRDDVK-PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSV---LNAL 191
           LF  M+ +  + PD  TFTS+LSA              H  +V  G  +F+S+      L
Sbjct: 620 LFWQMQNEGFRPPDGSTFTSILSACN------------HAGLVLEGYQIFSSMESEYGVL 667

Query: 192 ISV-YVKCVSSPFVSSRSLMGAARR------VFDEMP-ERDELSWTTMM 232
            ++ +  C+         L+G ARR      + ++MP   D   W T++
Sbjct: 668 PTIEHYGCLV-------GLLGRARRFQEAETLINQMPFPPDAAVWETLL 709


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 278/777 (35%), Positives = 432/777 (55%), Gaps = 99/777 (12%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP-----QPDIVARTTLI 88
           A S    M+  GF P E+    +         +   + +F  +      + D+     LI
Sbjct: 26  AISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIFGFLLKTGYFESDVCVGCALI 85

Query: 89  AAY-SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147
             +   + +++ A ++F++ P   R+ V +  MIT +        A++LF DM      P
Sbjct: 86  DMFVKGNGDLESAYKVFDRMP--DRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVP 143

Query: 148 DNFTFTSVLSALALIVEEEKQCM----QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
           D FT + V+SA A     E   +    Q HC V+KSG  L   V  +L+ +Y KCV+   
Sbjct: 144 DRFTLSGVVSACA-----EMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGS 198

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
           V        AR+VFD MP  + +S                               W A+I
Sbjct: 199 VDD------ARKVFDRMPVHNVMS-------------------------------WTAII 221

Query: 264 SGYVH-----RE-----LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
           +GYV      RE     L+M+  +++ + FT++SV+ ACAN     LG+QV+A +++   
Sbjct: 222 TGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRL 281

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
                    V N+L+++Y +CG                                ++ A+ 
Sbjct: 282 ASIN----CVGNSLISMYSRCGN-------------------------------MENARK 306

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
            F+ + E+NL+S+  +++  A++   EE  +LF+++   G     + FA  ++  + +GA
Sbjct: 307 AFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGA 366

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
           +  G Q+H++++ SG+ S+L   NALI+MY+RCG +EAA  VFN M + + +SW +MI  
Sbjct: 367 IGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITG 426

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
             +HG   RA+E + +ML+ G+ P+ +T++ VLSAC+H GL+ EG ++F++M   +GI P
Sbjct: 427 FAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVP 486

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
             +HYA  +DLL R+G   EA ++++S+PFK  A +    L  CR+HGN+DLG  AAE +
Sbjct: 487 RMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMI 546

Query: 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVD 673
            +  PH    Y+LLSN++A+ G+W++ A +RK M++R + KE GCSWIEV+NKVH F V 
Sbjct: 547 LEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVG 606

Query: 674 DTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLM 733
           DT+HP+AQ +Y  L+QL L++++LGY+P T FVLHD+E +QKE  L  HSEK+AVA+G +
Sbjct: 607 DTSHPQAQEIYDELDQLALKIKELGYIPSTDFVLHDVEEEQKEQYLFQHSEKIAVAYGFI 666

Query: 734 KLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
                  +RV KNLR+CGDCH AFK+ S V  +EIV+RD  RFHHF+DG CSC DYW
Sbjct: 667 STSTSRPIRVFKNLRVCGDCHTAFKYFSIVRRKEIVLRDANRFHHFKDGTCSCNDYW 723



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 123/252 (48%), Gaps = 16/252 (6%)

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
           +R+L+SW+ +IS  A N    E +  F  M   GF P +Y F G   +C+    +  G+ 
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 440 LHAQLVHSGY-DSSLSAGNALITMYARC-GVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           +   L+ +GY +S +  G ALI M+ +  G +E+A  VF+ MP+ + V+W  MI    Q 
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
           G    A++L+  M+  G +PDR T   V+SAC   GL+  GR+ F  +    G+      
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQ-FHCLVMKSGLDLDVCV 182

Query: 558 YARFIDLLCRA---GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
               +D+  +    G   +A+ V D +P   +   W A++ G    G  D   + A +LF
Sbjct: 183 GCSLVDMYAKCVADGSVDDARKVFDRMPVH-NVMSWTAIITGYVQSGGCD---REAIELF 238

Query: 615 ------QLMPHH 620
                 Q+ P+H
Sbjct: 239 LEMVQGQVKPNH 250


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 299/787 (37%), Positives = 434/787 (55%), Gaps = 87/787 (11%)

Query: 20  LQLCDPRNPITSSLA-------RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTL 72
           LQL   RN + + +A       +++HA    S   P  ++ N    +Y K   L  A+T 
Sbjct: 7   LQLQTFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTS 66

Query: 73  FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
           FD    P++ +  TLI AY+    + LAR++F++ P    D V YN +I AY+       
Sbjct: 67  FDLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIP--QPDIVSYNTLIAAYADRGECRP 124

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           A+ LF ++R      D FT + V+ A     ++     Q+HC VV  G   + SV NA++
Sbjct: 125 ALRLFAEVRELRFGLDGFTLSGVIIACG---DDVGLVRQLHCFVVVCGYDCYASVNNAVL 181

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPE---RDELSWTTMMTGYVKNDYLDAAREFLD 249
           + Y         S +  +  ARRVF EM E   RDE+SW  M+    ++      RE L+
Sbjct: 182 ACY---------SRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQH------REGLE 226

Query: 250 GMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
            +          L    V R LK       +D FT  SV++A         G Q H  ++
Sbjct: 227 AVE---------LFREMVRRGLK-------VDMFTMASVLTAFTCVKDLVGGMQFHGMMI 270

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKC-GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
           ++           V + L+ LY KC G + E R +F ++   DLV WN            
Sbjct: 271 KSGFHGNSH----VGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNT----------- 315

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQ-NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
                               MISG +Q     E+G+  F +M+  GF P D +F    ++
Sbjct: 316 --------------------MISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSA 355

Query: 428 CAGLGALENGRQLHAQLVHSGYD-SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
           C+ L +   G+Q+HA  + S    + +S  NAL+ MY++CG V  A  VF+TMP  + VS
Sbjct: 356 CSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVS 415

Query: 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546
            N+MIA   QHG    ++ L+E ML++ I P+ ITF+ VLSAC H G V+EG++YF  M 
Sbjct: 416 LNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMK 475

Query: 547 GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLG 606
             + I P  +HY+  IDLL RAGK  EA+ +I+++PF P +  W  LL  CR HGN++L 
Sbjct: 476 ERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELA 535

Query: 607 IQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNK 666
           ++AA +  QL P++A  YV+LSNMYA+  RW++AA V++LMR+RGVKK+PGCSWIE+D K
Sbjct: 536 VKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKK 595

Query: 667 VHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVL---HDMESDQKEYALSTHS 723
           VHVF+ +DT+HP  + ++ Y+ +++ +M++ GYVPD ++ L    ++E D+KE  L  HS
Sbjct: 596 VHVFVAEDTSHPMIKEIHVYMGEILRKMKQAGYVPDIRWALVKDEEVEPDEKERRLLYHS 655

Query: 724 EKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGK 783
           EKLAVAFGL+       + V+KNLRICGDCHNA K +S + GREI VRD  RFH F++G 
Sbjct: 656 EKLAVAFGLISTEEWVPILVVKNLRICGDCHNAIKLISAITGREITVRDTHRFHCFKEGH 715

Query: 784 CSCGDYW 790
           CSCGDYW
Sbjct: 716 CSCGDYW 722


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 284/796 (35%), Positives = 438/796 (55%), Gaps = 73/796 (9%)

Query: 13  ANRYASQLQLC---DPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYA 69
           +N Y+ Q++ C     RN   S   + +H ++I +   P   + N ++  Y       YA
Sbjct: 3   SNYYSVQIKQCIGLGARN--QSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYA 60

Query: 70  RTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSN 129
           R +FD IPQP++ +   L+ AYS +  +      F K P   RD V +N +I  YS +  
Sbjct: 61  RRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLP--DRDGVTWNVLIEGYSLSGL 118

Query: 130 GHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM--QMHCTVVKSGTGLFTSV 187
             AA++ +  M RD     N T  ++++ L L        +  Q+H  V+K G   +  V
Sbjct: 119 VGAAVKAYNTMMRD--FSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLV 176

Query: 188 LNALISVY--VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245
            + L+ +Y  V C+S            A++VF  + +R+ + + ++M G +    ++ A 
Sbjct: 177 GSPLLYMYANVGCISD-----------AKKVFYGLDDRNTVMYNSLMGGLLACGMIEDAL 225

Query: 246 EFLDGMSENVGVAWNALISGYVH-----------RELKMLMLRIQLDEFTYTSVISACAN 294
           +   GM ++  V+W A+I G              RE+K+  L+  +D++ + SV+ AC  
Sbjct: 226 QLFRGMEKD-SVSWAAMIKGLAQNGLAKEAIECFREMKVQGLK--MDQYPFGSVLPACGG 282

Query: 295 SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS 354
            G    GKQ+HA ++RT  +      + V +AL+ +Y KC                    
Sbjct: 283 LGAINEGKQIHACIIRTNFQD----HIYVGSALIDMYCKCK------------------- 319

Query: 355 WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF 414
                        +  AK++F+ M+++N++SWT M+ G  Q G  EE +K+F  M+  G 
Sbjct: 320 ------------CLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGI 367

Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
            P  Y    AI++CA + +LE G Q H + + SG    ++  N+L+T+Y +CG ++ +  
Sbjct: 368 DPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTR 427

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
           +FN M   D+VSW AM++A  Q G     I+L+++M++ G+ PD +T   V+SAC+ AGL
Sbjct: 428 LFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGL 487

Query: 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
           V++G+RYF+ M   YGI P   HY+  IDL  R+G+  EA   I+ +PF P A  W  LL
Sbjct: 488 VEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLL 547

Query: 595 AGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKK 654
           + CR  GN+++G  AAE L +L PHH   Y LLS++YA+ G+WD  A++R+ MR++ VKK
Sbjct: 548 SACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKK 607

Query: 655 EPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQ 714
           EPG SWI+   K+H F  DD + P    +Y  LE+L  ++   GY PDT FV HD+E   
Sbjct: 608 EPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAV 667

Query: 715 KEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGK 774
           K   L+ HSE+LA+AFGL+ +P G  +RV KNLR+C DCHNA K +S V GREI+VRD  
Sbjct: 668 KVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAV 727

Query: 775 RFHHFRDGKCSCGDYW 790
           RFH F+DG CSCGD+W
Sbjct: 728 RFHRFKDGTCSCGDFW 743


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  517 bits (1331), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 297/786 (37%), Positives = 439/786 (55%), Gaps = 85/786 (10%)

Query: 20  LQLCDPRNPITSSLARS-------VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTL 72
           LQL   RN + + +A+        +HA    S   P  ++ N    +Y K   L  A+T 
Sbjct: 7   LQLQTFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTS 66

Query: 73  FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
           F     P++ +  TLI AY+    + +AR +F++ P    D V YN +I AY+       
Sbjct: 67  FHLTQYPNVFSYNTLINAYAKHSLIHIARRVFDEIP--QPDIVSYNTLIAAYADRGECGP 124

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
            + LF ++R   +  D FT + V++A     ++     Q+HC VV  G   + SV NA++
Sbjct: 125 TLRLFEEVRELRLGLDGFTLSGVITACG---DDVGLVRQLHCFVVVCGHDCYASVNNAVL 181

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPE---RDELSWTTMMTGYVKNDYLDAAREFLD 249
           + Y         S +  +  ARRVF EM E   RDE+SW  M+          A  +  +
Sbjct: 182 ACY---------SRKGFLSEARRVFREMGEGGGRDEVSWNAMIV---------ACGQHRE 223

Query: 250 GMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
           GM E VG     L    V R LK       +D FT  SV++A         G+Q H  ++
Sbjct: 224 GM-EAVG-----LFREMVRRGLK-------VDMFTMASVLTAFTCVKDLVGGRQFHGMMI 270

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKC-GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
           ++           V + L+ LY KC G + E R +F ++   DLV WN ++S +      
Sbjct: 271 KSGFHGNSH----VGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGF------ 320

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
               SL+E +                     E+GL  F +M+  GF+P D +F    ++C
Sbjct: 321 ----SLYEDL--------------------SEDGLWCFREMQRNGFRPDDCSFVCVTSAC 356

Query: 429 AGLGALENGRQLHAQLVHSGYD-SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
           + L +   G+Q+HA  + S    + +S  NAL+ MY++CG V  A  VF+TMP  ++VS 
Sbjct: 357 SNLSSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSL 416

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
           N+MIA   QHG    ++ L+E ML++ I P+ ITF+ VLSAC H G V+EG++YF  M  
Sbjct: 417 NSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKE 476

Query: 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
            + I P  +HY+  IDLL RAGK  EA+ +I+++PF P +  W  LL  CR HGN++L +
Sbjct: 477 RFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAV 536

Query: 608 QAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKV 667
           +AA +  +L P++A  YV+LSNMYA+  RW++AA V++LMR+RGVKK+PGCSWIE+D KV
Sbjct: 537 KAANEFLRLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKV 596

Query: 668 HVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVL---HDMESDQKEYALSTHSE 724
           HVF+ +DT+HP  + ++ Y+ +++ +M++ GYVPD ++ L    ++E D++E  L  HSE
Sbjct: 597 HVFVAEDTSHPMIKEIHVYMGKMLKKMKQAGYVPDIRWALVKDEEVEPDERERRLLYHSE 656

Query: 725 KLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKC 784
           KLAVAFGL+    G  + V+KNLRICGDCHNA K +S + GREI VRD  RFH F++G C
Sbjct: 657 KLAVAFGLISTEEGVPILVVKNLRICGDCHNAVKLISALTGREITVRDTHRFHCFKEGHC 716

Query: 785 SCGDYW 790
           SC DYW
Sbjct: 717 SCRDYW 722


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  517 bits (1331), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 281/768 (36%), Positives = 428/768 (55%), Gaps = 81/768 (10%)

Query: 31   SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEI----PQPDIVARTT 86
            S +A  +   M   G  P       +++ +     L + +T+   I     + D+   T 
Sbjct: 326  SEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTA 385

Query: 87   LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
            L+  Y+   + K  R++F K  L  RD + +N MI   +   N   A E++  M+R+ + 
Sbjct: 386  LVKMYAKCGSYKDCRQVFEK--LVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMM 443

Query: 147  PDNFTFTSVLSAL----ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSP 202
            P+  T+  +L+A     AL    E     +H  VVK G     SV NALIS+Y +C S  
Sbjct: 444  PNKITYVILLNACVNPTALHWGRE-----IHSRVVKDGFMFDISVQNALISMYARCGS-- 496

Query: 203  FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL 262
                   +  AR +F++M  +D +SWT M+ G  K+                 G+   AL
Sbjct: 497  -------IKDARLLFNKMVRKDIISWTAMIGGLAKS-----------------GLGAEAL 532

Query: 263  ISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
                V ++++   L+   +  TYTS+++AC++      G+++H  ++             
Sbjct: 533  A---VFQDMQQAGLKP--NRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAH---- 583

Query: 323  VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
            V N LV +Y  CG V +A                               + +F+ M +R+
Sbjct: 584  VANTLVNMYSMCGSVKDA-------------------------------RQVFDRMTQRD 612

Query: 383  LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
            ++++  MI G A +  G+E LKLF +++ EG KP    +   + +CA  G+LE  +++H+
Sbjct: 613  IVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHS 672

Query: 443  QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
             ++  GY S  S GNAL++ YA+CG    A  VF+ M   + +SWNA+I    QHG G  
Sbjct: 673  LVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQD 732

Query: 503  AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562
             ++L+E+M  EGI PD +TF+++LSAC+HAGL++EGRRYF +M   +GI P  +HY   +
Sbjct: 733  VLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMV 792

Query: 563  DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622
            DLL RAG+  E + +I ++PF+ +  IW ALL  CRIHGN+ +  +AAE   +L P +A 
Sbjct: 793  DLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAA 852

Query: 623  TYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQA 682
             YV LS+MYA  G WD AA++RKLM  RGV KEPG SWIEV +K+H F+ +D +HPE++ 
Sbjct: 853  VYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHYFVAEDRSHPESEK 912

Query: 683  VYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVR 742
            +Y  L++L   M+  GYVPDT+ V+HD++  +KE A+  HSE+LA+A+GL+    G  +R
Sbjct: 913  IYAELDKLTHAMKMEGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTLPGTPIR 972

Query: 743  VLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            + KNLR+C DCH A KF++K+V REIV RD  RFHHF+DG CSCGDYW
Sbjct: 973  IFKNLRVCPDCHTATKFITKIVDREIVARDVNRFHHFKDGVCSCGDYW 1020



 Score =  199 bits (506), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 157/600 (26%), Positives = 268/600 (44%), Gaps = 92/600 (15%)

Query: 66  LVYARTLFDEIPQP----DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMI 121
           LV  R + + I Q     D      LI  Y    +++ AR+++NK     R    +NAM+
Sbjct: 157 LVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMV 216

Query: 122 TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC-MQMHCTVVKSG 180
             Y        A++L R+M++  +     T   +LS+         +C  ++H   +K+ 
Sbjct: 217 VGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCK--SPSALECGREIHVEAMKAR 274

Query: 181 TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY 240
                +V N ++++Y KC S         +  AR VFD+M  +  +SWT ++ GY    +
Sbjct: 275 LLFDVNVANCILNMYAKCGS---------IHEAREVFDKMETKSVVSWTIIIGGYADCGH 325

Query: 241 LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRL 300
            + A E    M +  GV  N +                     TY +V++A +     + 
Sbjct: 326 SEIAFEIFQKMQQE-GVVPNRI---------------------TYINVLNAFSGPAALKW 363

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           GK VH+++L        E  L V  ALV +Y KCG   + R +F ++  RDL++WN ++ 
Sbjct: 364 GKTVHSHIL----NAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIG 419

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
                G                  +W             EE  +++ QM+ EG  P    
Sbjct: 420 GLAEGG------------------NW-------------EEASEIYHQMQREGMMPNKIT 448

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
           +   + +C    AL  GR++H+++V  G+   +S  NALI+MYARCG ++ A  +FN M 
Sbjct: 449 YVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMV 508

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
             D +SW AMI  L + G GA A+ +++ M + G+ P+R+T+ ++L+AC+    +  GRR
Sbjct: 509 RKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRR 568

Query: 541 YFETMHGPYGIPPG---EDHYAR-FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
             + +     I  G   + H A   +++    G   +A+ V D +  +     + A++ G
Sbjct: 569 IHQQV-----IEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVA-YNAMIGG 622

Query: 597 CRIHGNIDLGIQAAE-----QLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
              H   +LG +A +     Q   L P    TY+ + N  AN G  + A  +  L+   G
Sbjct: 623 YAAH---NLGKEALKLFDRLQEEGLKPDKV-TYINMLNACANSGSLEWAKEIHSLVLKDG 678



 Score =  166 bits (420), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 125/503 (24%), Positives = 221/503 (43%), Gaps = 104/503 (20%)

Query: 27  NPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTT 86
           NP      R +H+ ++  GF     + N LI +Y +   +  AR LF+++ + DI++   
Sbjct: 458 NPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIIS--- 514

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
                                         + AMI   + +  G  A+ +F+DM++  +K
Sbjct: 515 ------------------------------WTAMIGGLAKSGLGAEALAVFQDMQQAGLK 544

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           P+  T+TS+L+A +     +    ++H  V+++G      V N L+++Y  C S      
Sbjct: 545 PNRVTYTSILNACSSPAALD-WGRRIHQQVIEAGLATDAHVANTLVNMYSMCGS------ 597

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              +  AR+VFD M +RD +++  M+ GY  ++    A +  D + E             
Sbjct: 598 ---VKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEE------------ 642

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                      ++ D+ TY ++++ACANSG     K++H+ +L    K        + NA
Sbjct: 643 ----------GLKPDKVTYINMLNACANSGSLEWAKEIHSLVL----KDGYLSDTSLGNA 688

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           LV+ Y KCG  ++A  +F++M +R+++SWNAI                            
Sbjct: 689 LVSTYAKCGSFSDALLVFDKMMKRNVISWNAI---------------------------- 720

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
              I G AQ+G G++ L+LF +M++EG KP    F   +++C+  G LE GR+    +  
Sbjct: 721 ---IGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSR 777

Query: 447 S-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAI 504
             G   ++     ++ +  R G ++    +  TMP   ++  W A++ A   HGN   A 
Sbjct: 778 DFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAE 837

Query: 505 ELYEQMLKEGILPDRITFLTVLS 527
              E  LK  + PD       LS
Sbjct: 838 RAAESSLK--LDPDNAAVYVALS 858



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 111/480 (23%), Positives = 207/480 (43%), Gaps = 110/480 (22%)

Query: 279 QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
           +++   Y  ++  C        G++VH ++++       ++++   NAL+ +Y +CG + 
Sbjct: 138 RVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQ-HCTVLDQYTV---NALINMYIQCGSIE 193

Query: 339 EARDIFNQM--PERDLVSWNAILSAYVSAGLIDEAKSLF--------------------- 375
           EAR ++N++   ER + SWNA++  YV  G I+EA  L                      
Sbjct: 194 EARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSS 253

Query: 376 ---------------EAMRERNLLSWTV---MISGLAQNGYGEEGLKLFSQMRLE----- 412
                          EAM+ R L    V   +++  A+ G   E  ++F +M  +     
Sbjct: 254 CKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSW 313

Query: 413 -----GFKPCDYA---------------------FAGAITSCAGLGALENGRQLHAQLVH 446
                G+  C ++                     +   + + +G  AL+ G+ +H+ +++
Sbjct: 314 TIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILN 373

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
           +G++S L+ G AL+ MYA+CG  +    VF  + N D ++WN MI  L + GN   A E+
Sbjct: 374 AGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEI 433

Query: 507 YEQMLKEGILPDRITFLTVLSACN-----------HAGLVKEG-------RRYFETMHGP 548
           Y QM +EG++P++IT++ +L+AC            H+ +VK+G       +    +M+  
Sbjct: 434 YHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYAR 493

Query: 549 YG------------IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP---FKPSAPIWEAL 593
            G            +      +   I  L ++G  +EA  V   +     KP+   + ++
Sbjct: 494 CGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSI 553

Query: 594 LAGCRIHGNIDLGIQAAEQLFQL-MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           L  C     +D G +  +Q+ +  +   A     L NMY+  G   DA +V   M  R +
Sbjct: 554 LNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDI 613



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 109/455 (23%), Positives = 182/455 (40%), Gaps = 127/455 (27%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIY--CKSLKLVYARTLF 73
           Y S L  C   +P      R +H  +I +G     H+ N L+++Y  C S+K   AR +F
Sbjct: 550 YTSILNACS--SPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVK--DARQVF 605

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
           D + Q DIVA   +I  Y+A                                HN  G  A
Sbjct: 606 DRMTQRDIVAYNAMIGGYAA--------------------------------HNL-GKEA 632

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
           ++LF  ++ + +KPD  T+ ++L+A A     E    ++H  V+K G    TS+ NAL+S
Sbjct: 633 LKLFDRLQEEGLKPDKVTYINMLNACANSGSLE-WAKEIHSLVLKDGYLSDTSLGNALVS 691

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
            Y KC S            A  VFD+M +R+ +SW  ++ G  ++       +  +    
Sbjct: 692 TYAKCGS---------FSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFE---- 738

Query: 254 NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
                             +M M  I+ D  T+ S++SAC+++GL   G++    + R   
Sbjct: 739 ------------------RMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFG 780

Query: 314 -KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA---------- 361
             PT E        +V L  + G+++E   +   MP + +   W A+L A          
Sbjct: 781 ITPTIEHY----GCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVA 836

Query: 362 ------------------------YVSAGLIDEAKSLFEAMRERNLL-----SWTVMISG 392
                                   Y +AG+ D A  L + M +R +      SW  +   
Sbjct: 837 ERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDK 896

Query: 393 L----AQNGYGEEGLKLFSQ-------MRLEGFKP 416
           L    A++    E  K++++       M++EG+ P
Sbjct: 897 LHYFVAEDRSHPESEKIYAELDKLTHAMKMEGYVP 931


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  517 bits (1331), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 288/790 (36%), Positives = 446/790 (56%), Gaps = 79/790 (10%)

Query: 8   YIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLV 67
           +  +L + +   L+ C     + +   +S+HA  I S      ++ N  + +Y K  +L 
Sbjct: 3   HFSSLLHNFRQFLKTCIAHRDLRT--GKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLS 60

Query: 68  YARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHN 127
            AR +FD     ++ +  TLI+AY+    V++A ++F++ P    D+V YN +I AY+  
Sbjct: 61  AARRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMP--QPDSVSYNTLIAAYARR 118

Query: 128 SNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSV 187
            +   A +LF +MR   +  D FT + +++A  + V   +   Q+H   V +G   + SV
Sbjct: 119 GDTQPAFQLFLEMREAFLDMDGFTLSGIITACGINVGLIR---QLHALSVVTGLDSYVSV 175

Query: 188 LNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE-RDELSWTTMMTGYVKNDYLDAARE 246
            NALI+ Y         S    +  ARR+F  + E RDE+SW +M+  Y+++     A E
Sbjct: 176 GNALITSY---------SKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALE 226

Query: 247 FLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
                                   L+M +  + +D FT  SV++A  N      G Q HA
Sbjct: 227 LY----------------------LEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHA 264

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGK-VNEARDIFNQMPERDLVSWNAILSAYVSA 365
            L+++           V + L+ LY KCG  + + R +F+++   DLV WN ++S Y   
Sbjct: 265 KLIKSGYHQNSH----VGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGY--- 317

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425
                  SL+E +                     +E L+ F Q+++ G +P D +    I
Sbjct: 318 -------SLYEDL--------------------SDEALECFRQLQVVGHRPDDCSLVCVI 350

Query: 426 TSCAGLGALENGRQLHAQLVHSGYDSS-LSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           ++C+ + +   GRQ+H   +     S+ +S  NALI MY++CG +  A  +F+TMP  ++
Sbjct: 351 SACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNT 410

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
           VS+N+MIA   QHG G +++ L+++ML+ G  P  ITF++VL+AC H G V++G+ YF  
Sbjct: 411 VSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNM 470

Query: 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
           M   +GI P   H++  IDLL RAGK SEA+ +I+++PF P    W ALL  CRIHGN++
Sbjct: 471 MKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRIHGNVE 530

Query: 605 LGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVD 664
           L I+AA +L QL P +A  YV+L+N+Y++ GR  DAA VRKLMRDRGVKK+PGCSWIEV+
Sbjct: 531 LAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVN 590

Query: 665 NKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVL----HDMESDQKEYALS 720
            ++H+F+ +DT HP  + + +YLE+++ +++K+GY P+ +  L      +   ++E  L 
Sbjct: 591 RRIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSALVGGDDRVWQREEELRLG 650

Query: 721 THSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFR 780
            HSEKLAV+FGLM    G  + V KNLRIC DCHNA K++S+VV REI VRD  RFH F+
Sbjct: 651 HHSEKLAVSFGLMSTREGEPILVFKNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFK 710

Query: 781 DGKCSCGDYW 790
           DG+CSCG YW
Sbjct: 711 DGQCSCGGYW 720


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  516 bits (1330), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 280/793 (35%), Positives = 441/793 (55%), Gaps = 70/793 (8%)

Query: 13  ANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTL 72
           +N Y++Q++ C       S   + +H ++I +   P   + N ++  Y      +YAR +
Sbjct: 3   SNYYSAQIKQCIGLG--ASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRV 60

Query: 73  FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
           FD IPQP++ +   L+ AYS S ++      F K P   RD V +N +I  YS +    A
Sbjct: 61  FDGIPQPNLFSWNNLLLAYSKSGHLSEMERTFEKLP--DRDGVTWNVLIEGYSLSGLVGA 118

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM--QMHCTVVKSGTGLFTSVLNA 190
           A++ +  M +D     N T  ++++ L L        +  Q+H  V+K G   +  V + 
Sbjct: 119 AVKAYNTMMKD--FSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSP 176

Query: 191 LISVYVK--CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           L+ +Y K  C+S            A++VF  + +R+ + + T+M G +    ++ A +  
Sbjct: 177 LLDMYSKVGCISD-----------AKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLF 225

Query: 249 DGMSENVGVAWNALISGYVH-----------RELKMLMLRIQLDEFTYTSVISACANSGL 297
            GM ++  V+W+A+I G              RE+K+  L+  +D++ + SV+ AC   G 
Sbjct: 226 RGMEKD-SVSWSAMIKGLAQNGMEKEAIECFREMKIEGLK--MDQYPFGSVLPACGGLGA 282

Query: 298 FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA 357
              G+Q+HA ++RT  +      + V +AL+ +Y KC                       
Sbjct: 283 INDGRQIHACIIRTNLQD----HIYVGSALIDMYCKCK---------------------- 316

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
                     +  AK++F+ M+++N++SWT M+ G  Q G   E +K+F  M+  G  P 
Sbjct: 317 ---------CLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPD 367

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
            Y    AI++CA + +LE G Q H + + +G    ++  N+L+T+Y +CG ++ +  +FN
Sbjct: 368 HYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFN 427

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKE 537
            M   D VSW AM++A  Q G    AI+L+++M++ G+ PD +T   V+SAC+ AGLV++
Sbjct: 428 EMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEK 487

Query: 538 GRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
           G+RYFE M   YGI P   HY+  IDL  R+G+  EA   I+ +PF+P A  W  LL+ C
Sbjct: 488 GQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSAC 547

Query: 598 RIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPG 657
           R  GN+++G  AAE L +L PHH   Y LLS++YA+ G+WD  A++R+ M+++ V+KEPG
Sbjct: 548 RNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNVRKEPG 607

Query: 658 CSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEY 717
            SWI+   K+H F  DD + P +  +Y  LE+L  ++   GY PDT FV HD+E   K  
Sbjct: 608 QSWIKWKGKLHSFSADDESSPYSDQIYAKLEELYQKIIDNGYKPDTSFVHHDVEEAVKIK 667

Query: 718 ALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFH 777
            L+ HSE+LA+AFGL+ +P G  +RV KNLR+C DCHNA K +S V GREI+VRD  RFH
Sbjct: 668 MLNCHSERLAIAFGLIFVPSGLPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFH 727

Query: 778 HFRDGKCSCGDYW 790
            F+DG CSCGD+W
Sbjct: 728 RFKDGTCSCGDFW 740


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  516 bits (1330), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 273/758 (36%), Positives = 426/758 (56%), Gaps = 75/758 (9%)

Query: 41  MISSGFKPREHIINRLIDIYCKSLKLV-YARTLFDEIP-----QPDIVARTTLIAAY-SA 93
           MI +G+ P E+         C + + V    ++F  +      Q D+     LI  +   
Sbjct: 159 MIENGYYPNEYCFAAATRA-CSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKG 217

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
             ++  A ++F K P   R+ V +  MIT          AI+LF +M     +PD FT +
Sbjct: 218 RGDLVSAFKVFEKMP--ERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLS 275

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
            V+SA A + E      Q+H   ++ G  L   V   LI++Y KC      S    M AA
Sbjct: 276 GVISACANM-ELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKC------SVDGSMCAA 328

Query: 214 RRVFDEMPERDELSWTTMMTGYV-KNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           R++FD++ + +  SWT M+TGYV K  Y + A +   GM                     
Sbjct: 329 RKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGM--------------------- 367

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
            ++  +  + FT++S + ACAN    R+G+QV  + ++              N +     
Sbjct: 368 -ILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVK--------LGFSSVNCVA---- 414

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
                                  N+++S Y  +G ID+A+  F+ + E+NL+S+  +I  
Sbjct: 415 -----------------------NSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDA 451

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
            A+N   EE L+LF+++  +G     + FA  ++  A +G +  G Q+HA+++ SG   +
Sbjct: 452 YAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLN 511

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
            S  NALI+MY+RCG +E+A  VF  M + + +SW ++I    +HG   +A+EL+ +ML+
Sbjct: 512 QSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLE 571

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
           EG+ P+ +T++ VLSAC+H GLV EG ++F++M+  +G+ P  +HYA  +D+L R+G  S
Sbjct: 572 EGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLS 631

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632
           EA   I+S+P+K  A +W   L  CR+HGN++LG  AA+ + +  PH    Y+LLSN+YA
Sbjct: 632 EAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYA 691

Query: 633 NLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVL 692
           +  +WD+ + +RK M+++ + KE GCSW+EV+NKVH F V DT+HP+A  +Y  L+ L +
Sbjct: 692 STSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSV 751

Query: 693 EMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGD 752
           +++KLGYVP+  FVLHD+E +QKE  L  HSEK+AVAFGL+       +RV KNLRICGD
Sbjct: 752 KIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRICGD 811

Query: 753 CHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           CH+A K++S   GREI+VRD  RFHH +DG+CSC +YW
Sbjct: 812 CHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  176 bits (446), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 152/624 (24%), Positives = 261/624 (41%), Gaps = 118/624 (18%)

Query: 27  NPITSSLARSVH-----------AHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           NP+T  L + ++            HM+  G  P     +  +    ++        + ++
Sbjct: 32  NPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEK 91

Query: 76  IPQPDI----VARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           + Q D+    V   +LI+ YS     + A  +F       RD + ++AM++ +++N+ G 
Sbjct: 92  LTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMG-SSRDLISWSAMVSCFANNNMGF 150

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
            A+  F DM  +   P+ + F +   A +                    T  F SV +++
Sbjct: 151 RALLTFVDMIENGYYPNEYCFAAATRACS--------------------TAEFVSVGDSI 190

Query: 192 ISVYVK--------CVSSP----FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND 239
               VK        CV       FV  R  + +A +VF++MPER+ ++WT M+T  ++  
Sbjct: 191 FGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFG 250

Query: 240 YLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFR 299
           Y   A +    M          ++SGY            + D FT + VISACAN  L  
Sbjct: 251 YAGEAIDLFLEM----------ILSGY------------EPDRFTLSGVISACANMELLL 288

Query: 300 LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC---GKVNEARDIFNQMPERDLVSWN 356
           LG+Q+H+  +R            V   L+ +Y KC   G +  AR IF+Q+ + ++ SW 
Sbjct: 289 LGQQLHSQAIRHGLT----LDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWT 344

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
           A+++ YV  G                              GY EE L LF  M L    P
Sbjct: 345 AMITGYVQKG------------------------------GYDEEALDLFRGMILTHVIP 374

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
             + F+  + +CA L AL  G Q+    V  G+ S     N+LI+MYAR G ++ A   F
Sbjct: 375 NHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAF 434

Query: 477 NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536
           + +   + +S+N +I A  ++ N   A+EL+ ++  +G+     TF ++LS     G + 
Sbjct: 435 DILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIG 494

Query: 537 EGRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEAL 593
           +G    E +H      G+   +      I +  R G    A  V + +  + +   W ++
Sbjct: 495 KG----EQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDR-NVISWTSI 549

Query: 594 LAGCRIHGNIDLGIQAAEQLFQLM 617
           + G   HG      QA E   +++
Sbjct: 550 ITGFAKHG---FATQALELFHKML 570



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 102/404 (25%), Positives = 166/404 (41%), Gaps = 105/404 (25%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           ++S L+ C   N     +   V  H +  GF     + N LI +Y +S ++  AR  FD 
Sbjct: 379 FSSTLKAC--ANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDI 436

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           + + ++++  T+I AY+ + N                                    A+E
Sbjct: 437 LFEKNLISYNTVIDAYAKNLN---------------------------------SEEALE 463

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LF ++    +    FTF S+LS  A I    K   Q+H  V+KSG  L  SV NALIS+Y
Sbjct: 464 LFNEIEDQGMGASAFTFASLLSGAASIGTIGKG-EQIHARVIKSGLKLNQSVCNALISMY 522

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            +C +         + +A +VF++M +R+ +SWT+++TG+ K+ +   A E    M E  
Sbjct: 523 SRCGN---------IESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEE- 572

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           GV  N +                     TY +V+SAC++ GL   G + H   + TE   
Sbjct: 573 GVRPNLV---------------------TYIAVLSACSHVGLVNEGWK-HFKSMYTEHGV 610

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA------------- 361
            P   +     +V +  + G ++EA    N MP + D + W   L A             
Sbjct: 611 IPR--MEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHA 668

Query: 362 ---------------------YVSAGLIDEAKSLFEAMRERNLL 384
                                Y S    DE  ++ +AM+E+NL+
Sbjct: 669 AKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLI 712


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 290/843 (34%), Positives = 447/843 (53%), Gaps = 101/843 (11%)

Query: 10  RTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHI----INRLIDIYCKSLK 65
           ++L     +    C   +   S L R V +  +      R HI    ++R I + C+ L+
Sbjct: 83  KSLGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLR 142

Query: 66  ---------LVYARTLFDEIP-----------------QPDIVARTTLIAAYSASDNVKL 99
                    L YA     E+P                 + ++     L+A YS S +++ 
Sbjct: 143 AGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLED 202

Query: 100 AREMFNKTPLK-MRDTVFYNAMITAYSHNSNGHAAIELFRDM------RRDDVKPDNFTF 152
           A  +F++   K + D + +N+++ A+   SN   A++LF +M      +  + + D  + 
Sbjct: 203 ASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISI 262

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            ++L A A + +   Q  ++H   +++GT     V NALI  Y KC S         M  
Sbjct: 263 VNILPACASL-KALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGS---------MKD 312

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM-SENVG---VAWNALISGYVH 268
           A  VF+ M  +D +SW  M+TGY ++    AA E    M  EN+    + W+A+I+GY  
Sbjct: 313 AVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQ 372

Query: 269 REL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR--------T 311
           R           +M++   + +  T  S++SACA+ G    G + HAY L+         
Sbjct: 373 RGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDND 432

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
                    L V+NAL+ +Y KC     AR IFN +P R                     
Sbjct: 433 FGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRR--------------------- 471

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM--RLEGFKPCDYAFAGAITSCA 429
                   ERN+++WTVMI G AQ G   + LKLFS+M  +     P  Y  +  + +CA
Sbjct: 472 --------ERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACA 523

Query: 430 GLGALENGRQLHAQLV-HSGYDSSLS-AGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
            L +L  G+Q+HA +  H  Y+SS+    N LI MY++CG V+ A  VF++MP  + VSW
Sbjct: 524 HLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSW 583

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
            +M++  G HG G  A++++++M K G +PD I+FL +L AC+H+G+V +G  YF+ M  
Sbjct: 584 TSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRS 643

Query: 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
            YG+     HYA  IDLL R+G+  +A   I  +P +PSA IW ALL+ CR+H N++L  
Sbjct: 644 DYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAE 703

Query: 608 QAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKV 667
            A  +L  +   + G+Y L+SN+YA   RW D AR+R+LM+  G+KK PGCSW++     
Sbjct: 704 YALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGT 763

Query: 668 HVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLA 727
             F V D +HP +  +Y  LE+L+  ++ +GYVP+T F LHD++ ++K   L+ HSEKLA
Sbjct: 764 ASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLTEHSEKLA 823

Query: 728 VAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCG 787
           +A+GL+    G  +R+ KNLR+CGDCH+AF ++SK+V  EI+VRD  RFHHF++G CSCG
Sbjct: 824 LAYGLLTTSPGCPIRITKNLRVCGDCHSAFIYISKIVDHEIIVRDSSRFHHFKNGSCSCG 883

Query: 788 DYW 790
            YW
Sbjct: 884 GYW 886



 Score = 44.3 bits (103), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 74/201 (36%), Gaps = 32/201 (15%)

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSG--------------------YDSSLSAGNALI 460
           FA  +  C  +  +   RQ+H +++  G                    Y S  S G  ++
Sbjct: 34  FASLLKECRSVNTV---RQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSPKSLGTGVV 90

Query: 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI 520
             Y  CG    A  V   +    +V WN ++ A  + G   RAI +  +ML+ G  PD  
Sbjct: 91  ASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHF 150

Query: 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY---ARFIDLLCRAGKFSEAKDV 577
           T    L AC      + G  +    HG       E +       + +  R+G   +A  V
Sbjct: 151 TLPYALKACGELPSYRSGSAF----HGLICCNGFESNVFVCNALVAMYSRSGSLEDASLV 206

Query: 578 IDSLPFKPSAPI--WEALLAG 596
            D +  K    +  W +++A 
Sbjct: 207 FDEITRKGIDDVISWNSIVAA 227


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 273/714 (38%), Positives = 401/714 (56%), Gaps = 85/714 (11%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           T L++ Y    ++  AR++F+   L  RD   +N MI  Y+ + +G  A +LF  M+++ 
Sbjct: 201 TALVSMYVKGGSMDGARQVFD--GLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEG 258

Query: 145 VKPDNFTFTSVL------SALALIVEEEKQCMQMHCTVVKSGTGLF--TSVLNALISVYV 196
            KP+  +F S+L       ALA       QCM          TGL     V  ALI +Y+
Sbjct: 259 FKPNRISFLSILDGCSTPEALAWGKAVHAQCMN---------TGLVDDVRVATALIRMYM 309

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
            C S         +  ARRVFD+M  RD +SWT M+ GY +N  ++ A      M E   
Sbjct: 310 GCGS---------IEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEE-- 358

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
                                IQ D  TY  +I+ACA+S    L +++H+ ++R      
Sbjct: 359 --------------------GIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGT- 397

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
               L V+ ALV +Y KC                               G I +A+ +F+
Sbjct: 398 ---DLLVDTALVHMYAKC-------------------------------GAIKDARQVFD 423

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
           AM  R+++SW+ MI    +NG GEE  + F  M+    +P    +   + +C  LGAL+ 
Sbjct: 424 AMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDL 483

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           G +++ Q + +   S +  GNALI M  + G +E A  +F  M   D V+WN MI     
Sbjct: 484 GMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSL 543

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
           HGN   A++L+++MLKE   P+ +TF+ VLSAC+ AG V+EGRR+F  +    GI P  +
Sbjct: 544 HGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTME 603

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
            Y   +DLL RAG+  EA+ +I+ +P KP++ IW  LLA CRI+GN+D+  +AAE+    
Sbjct: 604 LYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMS 663

Query: 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTA 676
            P+    YV LS+MYA  G W++ A+VRK+M  RGV+KE GC+WIEV+ K+H F+V+D +
Sbjct: 664 EPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDRS 723

Query: 677 HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLP 736
           HP+A  +Y  L +L+  +++ GY+P T+ VLH++   +KE A+S HSEKLA+A+G++ LP
Sbjct: 724 HPQAGEIYAELARLMTAIKREGYIPVTQNVLHNVGEQEKEEAISYHSEKLAIAYGVLSLP 783

Query: 737 GGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            GA +R+ KNLR+CGDCH+A KF+SKV GREI+ RD  RFHHF++G CSCGDYW
Sbjct: 784 SGAPIRIFKNLRVCGDCHSASKFISKVTGREIIARDASRFHHFKNGVCSCGDYW 837



 Score =  189 bits (479), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 144/533 (27%), Positives = 235/533 (44%), Gaps = 87/533 (16%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           Q +I    TLI  +S   N+  AR+ F+   ++ +  V +NA+I  Y+   +   A  LF
Sbjct: 93  QLNIYELNTLIKLHSICGNMLEARQTFD--SVENKTVVTWNAIIAGYAQLGHVKEAFALF 150

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           R M  + ++P   TF  VL A +      K   + H  V+K G      +  AL+S+YVK
Sbjct: 151 RQMVDEAMEPSIITFLIVLDACSSPA-GLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVK 209

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
             S         M  AR+VFD + +RD  ++  M+ GY K+   D  + F          
Sbjct: 210 GGS---------MDGARQVFDGLYKRDVSTFNVMIGGYAKSG--DGEKAF---------- 248

Query: 258 AWNALISGYVHRELKMLMLRIQLDEF-----TYTSVISACANSGLFRLGKQVHAYLLRTE 312
                           L  R+Q + F     ++ S++  C+       GK VHA  + T 
Sbjct: 249 ---------------QLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTG 293

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
                   + V  AL+ +Y  CG +  AR +F++M  RD+VSW  ++  Y     I++A 
Sbjct: 294 LVD----DVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAF 349

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
            LF  M+E                               EG +P    +   I +CA   
Sbjct: 350 GLFATMQE-------------------------------EGIQPDRITYIHIINACASSA 378

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
            L   R++H+Q+V +G+ + L    AL+ MYA+CG ++ A  VF+ M   D VSW+AMI 
Sbjct: 379 DLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIG 438

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR-YFETMHGPY-- 549
           A  ++G G  A E +  M +  + PD +T++ +L+AC H G +  G   Y + +      
Sbjct: 439 AYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVS 498

Query: 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
            IP G       I++  + G    A+ + +++  +     W  ++ G  +HGN
Sbjct: 499 HIPVGN----ALINMNVKHGSIERARYIFENM-VQRDVVTWNVMIGGYSLHGN 546



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 120/465 (25%), Positives = 205/465 (44%), Gaps = 75/465 (16%)

Query: 41  MISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQP----DIVARTTLIAAYSASDN 96
           M   GFKP       ++D       L + + +  +        D+   T LI  Y    +
Sbjct: 254 MQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGS 313

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
           ++ AR +F+K  +K+RD V +  MI  Y+ NSN   A  LF  M+ + ++PD  T+  ++
Sbjct: 314 IEGARRVFDK--MKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHII 371

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
           +A A    +     ++H  VV++G G    V  AL+ +Y KC           +  AR+V
Sbjct: 372 NACAS-SADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKC---------GAIKDARQV 421

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLML 276
           FD M  RD +SW+ M+  YV+N   + A E    M  N                      
Sbjct: 422 FDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRN---------------------- 459

Query: 277 RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
            ++ D  TY ++++AC + G   LG +++   ++ +        +PV NAL+ +  K G 
Sbjct: 460 NVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVS----HIPVGNALINMNVKHGS 515

Query: 337 VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
           +  AR IF  M +RD+V+WN ++  Y                               + +
Sbjct: 516 IERARYIFENMVQRDVVTWNVMIGGY-------------------------------SLH 544

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSA 455
           G   E L LF +M  E F+P    F G +++C+  G +E GR+  + L+   G   ++  
Sbjct: 545 GNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMEL 604

Query: 456 GNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
              ++ +  R G ++ A  + N MP   +S  W+ ++AA   +GN
Sbjct: 605 YGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGN 649



 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 158/360 (43%), Gaps = 46/360 (12%)

Query: 279 QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
            +D  TY  +   C       LGKQV  +++++      + ++   N L+ L+  CG + 
Sbjct: 58  HIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQS----GRQLNIYELNTLIKLHSICGNML 113

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGY 398
           EAR  F+ +  + +V+WNAI++ Y   G + EA                           
Sbjct: 114 EARQTFDSVENKTVVTWNAIIAGYAQLGHVKEA--------------------------- 146

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
                 LF QM  E  +P    F   + +C+    L+ G++ HAQ++  G+ S    G A
Sbjct: 147 ----FALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTA 202

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           L++MY + G ++ A  VF+ +   D  ++N MI    + G+G +A +L+ +M +EG  P+
Sbjct: 203 LVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPN 262

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMHGP---YGIPPGEDHYARFIDLLCRAGKFSEAK 575
           RI+FL++L  C+      E   + + +H      G+          I +    G    A+
Sbjct: 263 RISFLSILDGCS----TPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGAR 318

Query: 576 DVIDSLPFKPSAPIWEALLAGCRIHGNID--LGIQAAEQLFQLMPHHAGTYVLLSNMYAN 633
            V D +  +     W  ++ G   + NI+   G+ A  Q   + P    TY+ + N  A+
Sbjct: 319 RVFDKMKVRDVVS-WTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRI-TYIHIINACAS 376



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 159/356 (44%), Gaps = 75/356 (21%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           SLAR +H+ ++ +GF     +   L+ +Y K   +  AR +FD + + D+V+        
Sbjct: 381 SLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVS-------- 432

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                                    ++AMI AY  N  G  A E F  M+R++V+PD  T
Sbjct: 433 -------------------------WSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVT 467

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           + ++L+A   +   +   M+++   +K+       V NALI++ VK  S         + 
Sbjct: 468 YINLLNACGHLGALDLG-MEIYTQAIKADLVSHIPVGNALINMNVKHGS---------IE 517

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            AR +F+ M +RD ++W  M+ GY  +     ARE LD                      
Sbjct: 518 RARYIFENMVQRDVVTWNVMIGGYSLH---GNAREALDLFD------------------- 555

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVTL 330
           +ML  R + +  T+  V+SAC+ +G    G++  +YLL      PT E        +V L
Sbjct: 556 RMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELY----GCMVDL 611

Query: 331 YWKCGKVNEARDIFNQMPERDLVS-WNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
             + G+++EA  + N+MP +   S W+ +L+A    G +D A    E   ER L+S
Sbjct: 612 LGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVA----ERAAERCLMS 663


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 282/769 (36%), Positives = 415/769 (53%), Gaps = 151/769 (19%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +HAH I + F     ++  L+D+Y K   ++ A  LF+  P                
Sbjct: 157 GKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDK-------------- 202

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                             R+ V + AM+T YS N +GH AIE FRDMR + ++ + FTF 
Sbjct: 203 ------------------RNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFP 244

Query: 154 SVLSALALIVEEEKQC---MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           S+L+A   I      C    Q+H  +V+SG G    V +AL+ +Y KC            
Sbjct: 245 SILTACGSI----SACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGD---------- 290

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
                                         L  AR  L+ M  +  V+WN++I G V + 
Sbjct: 291 ------------------------------LSNARRMLETMEVDDPVSWNSMIVGCVRQG 320

Query: 271 L--------KMLMLR-IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
           L        +++ LR +++DEFTY SV++  +     R    VH+ +++T  +    + L
Sbjct: 321 LGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEA---YKL 377

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
            VNNALV +Y K                                G  D A  +FE M ++
Sbjct: 378 -VNNALVDMYAK-------------------------------RGYFDYAFDVFEKMTDK 405

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
           +++SWT +++G   NG  EE L+LF +MR+ G  P     A  +++CA L  LE G+Q+H
Sbjct: 406 DVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVH 465

Query: 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGA 501
           A  + SG  SSLS  N+L++MYA+CG +E AN VF++M   D ++W A+I    Q+G G 
Sbjct: 466 ANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGR 525

Query: 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF 561
                                       +HAGLV+ GR YF++M   YGI PG +HYA  
Sbjct: 526 ----------------------------DHAGLVEHGRSYFQSMEEVYGIKPGPEHYACM 557

Query: 562 IDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621
           IDLL R+GK  EAK++++ +  +P A +W+ALLA CR+HGN++LG +AA  LF+L P +A
Sbjct: 558 IDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAANNLFELEPKNA 617

Query: 622 GTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQ 681
             YVLLSN+Y+  G+W++AA+ R+LM+ RGV KEPGCSWIE+ +KVH F+ +D +HP   
Sbjct: 618 VPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTA 677

Query: 682 AVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATV 741
            +Y  ++++++ +++ GYVPD  F LHDM+ + KE  L+ HSEKLAVAFGL+ +P GA +
Sbjct: 678 EIYSKVDEIMILIKEAGYVPDMNFALHDMDEEGKELGLAYHSEKLAVAFGLLTMPPGAPI 737

Query: 742 RVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           R+ KNLRICGDCH A K++S V  R +++RD   FHHFR+G CSC DYW
Sbjct: 738 RIFKNLRICGDCHTAMKYVSGVFHRHVILRDSNCFHHFREGACSCSDYW 786



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 140/533 (26%), Positives = 245/533 (45%), Gaps = 80/533 (15%)

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           AR LFD +P  D  +  T+I AY+ S  +  AR++F +TP+  R  + ++++I+ Y    
Sbjct: 60  ARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPI--RSCITWSSLISGYCRYG 117

Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL 188
               A+ELF +M+ +  +P+ FT+ SVL   ++ V  EK   Q+H   +K+       V+
Sbjct: 118 CDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKG-KQIHAHAIKTQFDSNAFVV 176

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE-RDELSWTTMMTGYVKN-DYLDAARE 246
             L+ +Y KC           +  A  +F+  P+ R+ + WT M+TGY +N D   A   
Sbjct: 177 TGLVDMYAKC---------KCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIEC 227

Query: 247 FLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
           F D   E                        I+ ++FT+ S+++AC +      G QVH 
Sbjct: 228 FRDMRGEG-----------------------IECNQFTFPSILTACGSISACGFGAQVHG 264

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366
            ++R+        ++ V +ALV +Y KCG ++ AR +   M   D VSWN+++   V  G
Sbjct: 265 CIVRSGFGA----NVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQG 320

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
           L +EA SLF  M  R++                               K  ++ +   + 
Sbjct: 321 LGEEALSLFRIMHLRHM-------------------------------KIDEFTYPSVLN 349

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
             + +  + N   +H+ +V +G+++     NAL+ MYA+ G  + A  VF  M + D +S
Sbjct: 350 CFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVIS 409

Query: 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546
           W +++     +G+   A+ L+ +M   GI PD+I    VLSAC    +++ G++    +H
Sbjct: 410 WTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQ----VH 465

Query: 547 GPY---GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
             +   G+          + +  + G   +A  V DS+  +     W AL+ G
Sbjct: 466 ANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQ-DVITWTALIVG 517



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 212/469 (45%), Gaps = 73/469 (15%)

Query: 159 LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA---ARR 215
           L +     K C Q+  T +      F   +N+  +V+    S+  +S+ S  G    AR+
Sbjct: 6   LGIYTFSRKVCHQLEHTELNHHIRRF---VNSCGTVHSSSDSNWVLSNLSKCGRVDDARK 62

Query: 216 VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLM 275
           +FD MP+RDE SW TM+  Y  +  L+ AR+          + W++LISGY      +  
Sbjct: 63  LFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEA 122

Query: 276 LRI---------QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
           L +         + ++FT+ SV+  C+   L   GKQ+HA+ ++T+          V   
Sbjct: 123 LELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNA----FVVTG 178

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           LV +Y KC  + EA  +F   P++                              RN + W
Sbjct: 179 LVDMYAKCKCILEAEYLFELAPDK------------------------------RNHVLW 208

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
           T M++G +QNG G + ++ F  MR EG +   + F   +T+C  + A   G Q+H  +V 
Sbjct: 209 TAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVR 268

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
           SG+ +++  G+AL+ MY++CG +  A  +  TM   D VSWN+MI    + G G  A+ L
Sbjct: 269 SGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSL 328

Query: 507 YEQMLKEGILPDRITFLTVLSACN-----------HAGLVKEGRRYFETMHGPYGIPPGE 555
           +  M    +  D  T+ +VL+  +           H+ +VK G   ++ ++         
Sbjct: 329 FRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNA------- 381

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
                 +D+  + G F  A DV + +  K     W +L+ GC  +G+ +
Sbjct: 382 -----LVDMYAKRGYFDYAFDVFEKMTDKDVIS-WTSLVTGCVHNGSYE 424



 Score =  160 bits (405), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 156/289 (53%), Gaps = 13/289 (4%)

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           KCG+V++AR +F+ MP+RD  SWN ++ AY ++G ++EA+ LF     R+ ++W+ +ISG
Sbjct: 53  KCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISG 112

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
             + G   E L+LF +M+ EG +P  + +   +  C+    LE G+Q+HA  + + +DS+
Sbjct: 113 YCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSN 172

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNV-DSVSWNAMIAALGQHGNGARAIELYEQML 511
                 L+ MYA+C  +  A  +F   P+  + V W AM+    Q+G+G +AIE +  M 
Sbjct: 173 AFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMR 232

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY---GIPPGEDHYARFIDLLCRA 568
            EGI  ++ TF ++L+AC        G +    +HG     G        +  +D+  + 
Sbjct: 233 GEGIECNQFTFPSILTACGSISACGFGAQ----VHGCIVRSGFGANVFVGSALVDMYSKC 288

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           G  S A+ +++++        W +++ GC   G   LG + A  LF++M
Sbjct: 289 GDLSNARRMLETMEVDDPVS-WNSMIVGCVRQG---LG-EEALSLFRIM 332


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 286/783 (36%), Positives = 412/783 (52%), Gaps = 118/783 (15%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           + S L  C   +P   +  + VHA ++++GF     I   L+ +Y K   +  AR +FD 
Sbjct: 161 FLSVLDACS--SPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFD- 217

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
                                            L +RD   +N M+  Y+ + +   A E
Sbjct: 218 --------------------------------GLHIRDVSTFNVMVGGYAKSGDWEKAFE 245

Query: 136 LFRDMRRDDVKPDNFTFTSVL------SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLN 189
           LF  M++  +KP+  +F S+L       ALA       QCM        +G      V  
Sbjct: 246 LFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMN-------AGLVDDIRVAT 298

Query: 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD 249
           +LI +Y  C S         +  ARRVFD M  RD +SWT M+ GY +N  ++ A     
Sbjct: 299 SLIRMYTTCGS---------IEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFA 349

Query: 250 GMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
            M E                        IQ D  TY  +++ACA S      +++H+ + 
Sbjct: 350 TMQEE----------------------GIQPDRITYMHIMNACAISANLNHAREIHSQV- 386

Query: 310 RTEAKPTPEFS--LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367
                    F   L V+ ALV +Y KCG + +AR +F+ MP RD+VSW+A++ AYV    
Sbjct: 387 -----DIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYV---- 437

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
                                      +NGYG E  + F  M+    +P    +   + +
Sbjct: 438 ---------------------------ENGYGTEAFETFHLMKRSNIEPDGVTYINLLNA 470

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
           C  LGAL+ G +++ Q + +   S +  GNALI M A+ G VE A  +F+TM   D ++W
Sbjct: 471 CGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITW 530

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
           NAMI     HGN   A+ L+++MLKE   P+ +TF+ VLSAC+ AG V EGRR+F  +  
Sbjct: 531 NAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLE 590

Query: 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
             GI P    Y   +DLL RAG+  EA+ +I S+P KP++ IW +LL  CRIHGN+D+  
Sbjct: 591 GRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAE 650

Query: 608 QAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKV 667
           +AAE+   + P+    YV LS+MYA  G W++ A+VRK+M  RG++KE GC+WIEV  KV
Sbjct: 651 RAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKV 710

Query: 668 HVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLA 727
           H F+V+D +HP    +Y  L +L+  +++ GY+P T+ VLHD+   QKE A+S HSEKLA
Sbjct: 711 HTFVVEDRSHPLVGEIYAELARLMNAIKREGYIPITQNVLHDVGEQQKEEAISYHSEKLA 770

Query: 728 VAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCG 787
           +A+G++ LP G  +R+ KNLR+C DCH+A KF+SKV GREI+ RD  RFHHF+DG CSCG
Sbjct: 771 IAYGVLSLPSGTPIRIYKNLRVCSDCHSASKFISKVTGREIIARDASRFHHFKDGVCSCG 830

Query: 788 DYW 790
           DYW
Sbjct: 831 DYW 833



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 159/610 (26%), Positives = 264/610 (43%), Gaps = 94/610 (15%)

Query: 9   IRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGF-KPREHIINRL-IDIYCKSLKL 66
           I  +  R+   LQL  P     S+  R V A+ +     +   HI +R  + ++ +  +L
Sbjct: 11  IAVVRRRWFGSLQLPVPSARFRSTFTRRVGANDVLQRLGEGGNHIDSRTYVKLFQRCTEL 70

Query: 67  ---VYARTLFDEIPQP----DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNA 119
                 + + D I Q     +I    TLI  YS   NV  AR++F+   ++ +  V +NA
Sbjct: 71  RDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDS--VENKTVVTWNA 128

Query: 120 MITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKS 179
           +I  Y+   +   A  LFR M  + ++P   TF SVL A +          ++H  VV +
Sbjct: 129 LIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPA-GLNWGKEVHAQVVTA 187

Query: 180 GTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND 239
           G      +  AL+S+YVK  S         M  AR+VFD +  RD  ++  M+ GY K+ 
Sbjct: 188 GFVSDFRIGTALVSMYVKGGS---------MDDARQVFDGLHIRDVSTFNVMVGGYAKSG 238

Query: 240 YLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFR 299
             + A E                         +M  + ++ ++ ++ S++  C       
Sbjct: 239 DWEKAFELF----------------------YRMQQVGLKPNKISFLSILDGCWTPEALA 276

Query: 300 LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAIL 359
            GK VHA  +           + V  +L+ +Y  CG +  AR +F+ M  RD+VSW  ++
Sbjct: 277 WGKAVHAQCMNAGLVD----DIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMI 332

Query: 360 SAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY 419
             Y   G I++A  LF  M+E                               EG +P   
Sbjct: 333 EGYAENGNIEDAFGLFATMQE-------------------------------EGIQPDRI 361

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
            +   + +CA    L + R++H+Q+  +G+ + L    AL+ MYA+CG ++ A  VF+ M
Sbjct: 362 TYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAM 421

Query: 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
           P  D VSW+AMI A  ++G G  A E +  M +  I PD +T++ +L+AC H G +  G 
Sbjct: 422 PRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGM 481

Query: 540 RYFE-------TMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592
             +          H P G           I +  + G    A+ + D++  +     W A
Sbjct: 482 EIYTQAIKADLVSHVPLG--------NALIIMNAKHGSVERARYIFDTM-VRRDVITWNA 532

Query: 593 LLAGCRIHGN 602
           ++ G  +HGN
Sbjct: 533 MIGGYSLHGN 542


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 264/694 (38%), Positives = 408/694 (58%), Gaps = 71/694 (10%)

Query: 100 AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA- 158
           A ++F+K P   R+ V +  MIT ++       AI+LF DM      PD FT++SVLSA 
Sbjct: 4   AYKVFDKMP--ERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 61

Query: 159 --LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
             L L+   +    Q+H  V++ G  L   V  +L+ +Y KC +   V        +R+V
Sbjct: 62  TELGLLALGK----QLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDD------SRKV 111

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLML 276
           F++MPE + +SWT ++T Y ++   D  +E ++   +        +ISG+          
Sbjct: 112 FEQMPEHNVMSWTAIITAYAQSGECD--KEAIELFCK--------MISGH---------- 151

Query: 277 RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
            I+ + F+++SV+ AC N      G+QV++Y ++            V N+L+++Y + G+
Sbjct: 152 -IRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVN----CVGNSLISMYARSGR 206

Query: 337 VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
           + +AR  F+ + E++LVS+NAI+  Y                               A+N
Sbjct: 207 MEDARKAFDILFEKNLVSYNAIVDGY-------------------------------AKN 235

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
              EE   LF+++   G     + FA  ++  A +GA+  G Q+H +L+  GY S+    
Sbjct: 236 LKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCIC 295

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
           NALI+MY+RCG +EAA  VFN M + + +SW +MI    +HG   RA+E++ +ML+ G  
Sbjct: 296 NALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTK 355

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
           P+ IT++ VLSAC+H G++ EG+++F +M+  +GI P  +HYA  +DLL R+G   EA +
Sbjct: 356 PNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAME 415

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636
            I+S+P    A +W  LL  CR+HGN +LG  AAE + +  P     Y+LLSN++A+ G+
Sbjct: 416 FINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQ 475

Query: 637 WDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRK 696
           W D  ++RK M++R + KE GCSWIEV+N+VH F V +T+HP+A  +Y+ L+QL  ++++
Sbjct: 476 WKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKE 535

Query: 697 LGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNA 756
           +GY+PDT FVLHD+E +QKE  L  HSEK+AVAFGL+       +R+ KNLR+CGDCH A
Sbjct: 536 MGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTA 595

Query: 757 FKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            K++S   GREIVVRD  RFHH ++G CSC DYW
Sbjct: 596 IKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 629



 Score = 43.5 bits (101), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
              +H  ++  G+K  + I N LI +Y +   +  A  +F+E+   ++++ T++I  ++ 
Sbjct: 276 GEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAK 335

Query: 94  SDNVKLAREMFNK---TPLKMRDTVFYNAMITAYSH 126
                 A EMF+K   T  K  + + Y A+++A SH
Sbjct: 336 HGFATRALEMFHKMLETGTKPNE-ITYVAVLSACSH 370


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 284/804 (35%), Positives = 436/804 (54%), Gaps = 101/804 (12%)

Query: 49  REHI----INRLIDIYCKSLK---------LVYARTLFDEIP-----------------Q 78
           REHI    ++R I + C+ L+         L YA     E+P                 +
Sbjct: 122 REHIKEGHLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFE 181

Query: 79  PDIVARTTLIAAYSASDNVKLAREMFNKTPLK-MRDTVFYNAMITAYSHNSNGHAAIELF 137
            ++     L+A YS   +++ A  +F++   K + D + +N+++ A+   SN   A+ELF
Sbjct: 182 SNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELF 241

Query: 138 RDM------RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
            +M      +  + + D  +  ++L A A + +   Q  ++H   +++GT     V NAL
Sbjct: 242 SEMSMIVHEKATNERSDIISIVNILPACASL-KALPQIKEIHSYAIRNGTFADAFVCNAL 300

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           I  Y KC S         M  A +VF+ M  +D +SW  M+TGY ++    AA E  + M
Sbjct: 301 IDTYAKCGS---------MNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENM 351

Query: 252 -SENVG---VAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLF 298
             EN+    + W+A+I+GY  R           +M++   + +  T  S++SACA+ G  
Sbjct: 352 RKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGAL 411

Query: 299 RLGKQVHAYLLR--------TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
             G ++HAY L+                  L V NAL+ +Y KC     AR IF+ +P  
Sbjct: 412 SQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPR- 470

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM- 409
                                       RERN+++WTVMI G AQ G   + LK+FS+M 
Sbjct: 471 ----------------------------RERNVVTWTVMIGGYAQYGDSNDALKIFSEMI 502

Query: 410 -RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV-HSGYDSSLS-AGNALITMYARC 466
            +     P  Y  +  + +CA L AL  G+Q+HA +  H  Y+ S+    N LI MY++C
Sbjct: 503 SKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKC 562

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G V+ A  VF++MP  + VSW +M++  G HG G  A++++++M K G +PD I+FL +L
Sbjct: 563 GDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLL 622

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
            AC+H+G+V +G  YF+ M   Y +    +HYA  IDLL R G+  +A   I  +P +PS
Sbjct: 623 YACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPS 682

Query: 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKL 646
           A IW ALL+ CR+H N++L   A  +L  +   + G+Y L+SN+YAN  RW D AR+R+L
Sbjct: 683 AVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQL 742

Query: 647 MRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFV 706
           M+  G+KK PGCSW++       F V D +HP +  +Y  LE+L+  ++ +GYVP+T F 
Sbjct: 743 MKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFA 802

Query: 707 LHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGR 766
           LHD++ ++K   LS HSEKLA+A+GL+    G  +R+ KNLR+CGDCH+AF ++SK+V  
Sbjct: 803 LHDVDDEEKNNLLSEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDH 862

Query: 767 EIVVRDGKRFHHFRDGKCSCGDYW 790
           EI+VRD  RFHHF++G CSCG YW
Sbjct: 863 EIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  197 bits (500), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 154/546 (28%), Positives = 256/546 (46%), Gaps = 67/546 (12%)

Query: 85  TTLIAAYSASDNVKLAREMFNK-TPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD 143
           T ++A+Y A    K A  +  + TP      V++N ++  +    +   AI +   M R 
Sbjct: 87  TGVVASYLACGATKDALSVLERVTP---SPAVWWNLLVREHIKEGHLDRAIGVSCRMLRA 143

Query: 144 DVKPDNFTFTSVLSALALIVEEEKQCM--QMHCTVVKSGTGLFTSVLNALISVYVKCVSS 201
             KPD+FT    L A     E    C    +H  +  +G      V NAL+++Y +C S 
Sbjct: 144 GTKPDHFTLPYALKACG---ELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGS- 199

Query: 202 PFVSSRSLMGAARRVFDEMPER---DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
                   +  A  VFDE+  +   D +SW +++  +VK      A E    MS      
Sbjct: 200 --------LEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSM----- 246

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                   VH +        + D  +  +++ ACA+       K++H+Y +R        
Sbjct: 247 -------IVHEKAT----NERSDIISIVNILPACASLKALPQIKEIHSYAIRN-GTFADA 294

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
           F   V NAL+  Y KCG +N+A  +FN M  +D+VSWNA+++ Y  +G    A  LFE M
Sbjct: 295 F---VCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENM 351

Query: 379 RERNL----LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
           R+ N+    ++W+ +I+G AQ G  +E L  F QM L+G +P        +++CA LGAL
Sbjct: 352 RKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGAL 411

Query: 435 ENGRQLHAQLVHSGYDS------------SLSAGNALITMYARCGVVEAANCVFNTMPNV 482
             G ++HA  +     S             L   NALI MY++C   +AA  +F+++P  
Sbjct: 412 SQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRR 471

Query: 483 DS--VSWNAMIAALGQHGNGARAIELYEQMLKE--GILPDRITFLTVLSACNHAGLVKEG 538
           +   V+W  MI    Q+G+   A++++ +M+ +   + P+  T   +L AC H   ++ G
Sbjct: 472 ERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMG 531

Query: 539 RRY--FETMHGPYGIPPGEDHYAR-FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
           ++   + T H  Y   P     A   ID+  + G    A++V DS+P K +   W ++++
Sbjct: 532 KQIHAYVTRHHEY--EPSVYFVANCLIDMYSKCGDVDTARNVFDSMP-KRNEVSWTSMMS 588

Query: 596 GCRIHG 601
           G  +HG
Sbjct: 589 GYGMHG 594



 Score =  175 bits (444), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 143/503 (28%), Positives = 233/503 (46%), Gaps = 97/503 (19%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           + +H++ I +G      + N LID Y K   +  A  +F+ +   D+V+   ++  Y+ S
Sbjct: 279 KEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQS 338

Query: 95  DNVKLAREMF-----NKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
            N   A E+F        PL   D + ++A+I  Y+       A++ F+ M  D  +P++
Sbjct: 339 GNFGAAFELFENMRKENIPL---DVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNS 395

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKS------------GTGLFTSVLNALISVYVK 197
            T  S+LSA A +     Q M++H   +K             G G    V NALI +Y K
Sbjct: 396 VTIISLLSACASL-GALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSK 454

Query: 198 CVSSPFVSSRSLMGAARRVFDEMP--ERDELSWTTMMTGYVK-NDYLDAAREFLDGMSEN 254
           C S           AAR +FD +P  ER+ ++WT M+ GY +  D  DA + F + +S+ 
Sbjct: 455 CRS---------FKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKP 505

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR-TEA 313
             VA NA                     +T + ++ ACA+    R+GKQ+HAY+ R  E 
Sbjct: 506 YAVAPNA---------------------YTISCILMACAHLAALRMGKQIHAYVTRHHEY 544

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
           +P+  F   V N L+ +Y KCG V+ AR++F+ MP+R+ VSW +++S Y           
Sbjct: 545 EPSVYF---VANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGY----------- 590

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
                                 +G G+E L +F +M+  GF P D +F   + +C+  G 
Sbjct: 591 --------------------GMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGM 630

Query: 434 LENGRQLHAQLVHSGYDSSLSAGN--ALITMYARCGVVEAANCVFNTMP-NVDSVSWNAM 490
           ++ G   +  ++   YD   SA +   +I + ARCG ++ A      MP    +V W A+
Sbjct: 631 VDQGLN-YFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVAL 689

Query: 491 IAALGQHGNGARAIELYEQMLKE 513
           ++A   H N    +EL E  L +
Sbjct: 690 LSACRVHSN----VELAEYALNK 708



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 134/275 (48%), Gaps = 23/275 (8%)

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
             ++++Y++ G   +A S+ E +     + W +++    + G+ +  + +  +M   G K
Sbjct: 87  TGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTK 146

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P  +    A+ +C  L +   GR LH  +  +G++S++   NAL+ MY+RCG +E A+ V
Sbjct: 147 PDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLV 206

Query: 476 FN--TMPNVDSV-SWNAMIAALGQHGNGARAIELYEQM---LKEGILPDR---ITFLTVL 526
           F+  T   +D V SWN+++AA  +  N   A+EL+ +M   + E    +R   I+ + +L
Sbjct: 207 FDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNIL 266

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGE--DHYA--RFIDLLCRAGKFSEAKDVIDSLP 582
            AC     + +     + +H  Y I  G   D +     ID   + G  ++A  V + + 
Sbjct: 267 PACASLKALPQ----IKEIHS-YAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVME 321

Query: 583 FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           FK     W A++ G    GN      AA +LF+ M
Sbjct: 322 FKDVVS-WNAMVTGYTQSGNFG----AAFELFENM 351



 Score = 43.1 bits (100), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 74/201 (36%), Gaps = 32/201 (15%)

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSG--------------------YDSSLSAGNALI 460
           FA  +  C  +  +   RQ+H +++  G                    Y S  S G  ++
Sbjct: 34  FASLLKECRSVNTV---RQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYVSPKSLGTGVV 90

Query: 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI 520
             Y  CG  + A  V   +    +V WN ++    + G+  RAI +  +ML+ G  PD  
Sbjct: 91  ASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHF 150

Query: 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY---ARFIDLLCRAGKFSEAKDV 577
           T    L AC        GR     +HG       E +       + +  R G   +A  V
Sbjct: 151 TLPYALKACGELPSYCCGR----ALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLV 206

Query: 578 IDSLPFKPSAPI--WEALLAG 596
            D +  K    +  W +++A 
Sbjct: 207 FDEITRKGIDDVISWNSIVAA 227


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 264/694 (38%), Positives = 408/694 (58%), Gaps = 71/694 (10%)

Query: 100 AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA- 158
           A ++F+K P   R+ V +  MIT ++       AI+LF DM      PD FT++SVLSA 
Sbjct: 9   AYKVFDKMP--ERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 66

Query: 159 --LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
             L L+   +    Q+H  V++ G  L   V  +L+ +Y KC +   V        +R+V
Sbjct: 67  TELGLLALGK----QLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDD------SRKV 116

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLML 276
           F++MPE + +SWT ++T Y ++   D  +E ++   +        +ISG+          
Sbjct: 117 FEQMPEHNVMSWTAIITAYAQSGECD--KEAIELFCK--------MISGH---------- 156

Query: 277 RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
            I+ + F+++SV+ AC N      G+QV++Y ++            V N+L+++Y + G+
Sbjct: 157 -IRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVN----CVGNSLISMYARSGR 211

Query: 337 VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
           + +AR  F+ + E++LVS+NAI+  Y                               A+N
Sbjct: 212 MEDARKAFDILFEKNLVSYNAIVDGY-------------------------------AKN 240

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
              EE   LF+++   G     + FA  ++  A +GA+  G Q+H +L+  GY S+    
Sbjct: 241 LKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCIC 300

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
           NALI+MY+RCG +EAA  VFN M + + +SW +MI    +HG   RA+E++ +ML+ G  
Sbjct: 301 NALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTK 360

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
           P+ IT++ VLSAC+H G++ EG+++F +M+  +GI P  +HYA  +DLL R+G   EA +
Sbjct: 361 PNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAME 420

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636
            I+S+P    A +W  LL  CR+HGN +LG  AAE + +  P     Y+LLSN++A+ G+
Sbjct: 421 FINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQ 480

Query: 637 WDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRK 696
           W D  ++RK M++R + KE GCSWIEV+N+VH F V +T+HP+A  +Y+ L+QL  ++++
Sbjct: 481 WKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKE 540

Query: 697 LGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNA 756
           +GY+PDT FVLHD+E +QKE  L  HSEK+AVAFGL+       +R+ KNLR+CGDCH A
Sbjct: 541 MGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTA 600

Query: 757 FKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            K++S   GREIVVRD  RFHH ++G CSC DYW
Sbjct: 601 IKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 634



 Score = 43.5 bits (101), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
              +H  ++  G+K  + I N LI +Y +   +  A  +F+E+   ++++ T++I  ++ 
Sbjct: 281 GEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAK 340

Query: 94  SDNVKLAREMFNK---TPLKMRDTVFYNAMITAYSH 126
                 A EMF+K   T  K  + + Y A+++A SH
Sbjct: 341 HGFATRALEMFHKMLETGTKPNE-ITYVAVLSACSH 375


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 287/801 (35%), Positives = 444/801 (55%), Gaps = 112/801 (13%)

Query: 65  KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
           KLV+ R L     + D V   TLI+ YS   + + AR +F     K RD V ++AM++ +
Sbjct: 46  KLVH-RKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNK-RDLVSWSAMVSCF 103

Query: 125 SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL-----ALIVEEEKQCMQMHCTVVKS 179
           ++NS    AI  F DM      P+ + F +V+ A      A + E       ++  VVK+
Sbjct: 104 ANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGE------IIYGFVVKT 157

Query: 180 GTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND 239
           G       L A + V  + +   FV     +G+A +VFD+MPER+ ++WT M+T + +  
Sbjct: 158 G------YLEADVCVGCELIDM-FVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQ-- 208

Query: 240 YLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFR 299
            L  AR+ +D       +  +  +SGYV             D FTY+SV+SAC   GL  
Sbjct: 209 -LGCARDAID-------LFLDMELSGYVP------------DRFTYSSVLSACTELGLLA 248

Query: 300 LGKQVHAYLL------------------------------RTEAKPTPEFSLPVNNALVT 329
           LGKQ+H+ ++                              R   +  PE ++    A++T
Sbjct: 249 LGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIIT 308

Query: 330 LYWKCGKVN-EARDIFNQMPE--------------------------RDLVSW------- 355
            Y + G+ + EA ++F +M                              + S+       
Sbjct: 309 AYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIA 368

Query: 356 ------NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
                 N+++S Y  +G +++A+  F+ + E+NL+S+  ++ G A+N   EE   LF+++
Sbjct: 369 SVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEI 428

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
              G     + FA  ++  A +GA+  G Q+H +L+  GY S+    NALI+MY+RCG +
Sbjct: 429 ADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNI 488

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           EAA  VFN M + + +SW +MI    +HG   RA+E++ +ML+ G  P+ IT++ VLSAC
Sbjct: 489 EAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSAC 548

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
           +H G++ EG+++F +M+  +GI P  +HYA  +DLL R+G   EA + I+S+P    A +
Sbjct: 549 SHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALV 608

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
           W  LL  CR+HGN +LG  AAE + +  P     Y+LLSN++A+ G+W D  ++RK M++
Sbjct: 609 WRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKE 668

Query: 650 RGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHD 709
           R + KE GCSWIEV+N+VH F V +T+HP+A  +Y+ L+QL  +++++GY+PDT FVLHD
Sbjct: 669 RNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHD 728

Query: 710 MESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIV 769
           +E +QKE  L  HSEK+AVAFGL+       +R+ KNLR+CGDCH A K++S   GREIV
Sbjct: 729 IEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIV 788

Query: 770 VRDGKRFHHFRDGKCSCGDYW 790
           VRD  RFHH ++G CSC DYW
Sbjct: 789 VRDSNRFHHIKNGVCSCNDYW 809



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 132/283 (46%), Gaps = 42/283 (14%)

Query: 265 GYVHRELKMLMLRIQL----DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
           G +H     L L  Q     D  TY+ ++ +C     F+LGK VH  L+++      E  
Sbjct: 5   GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQS----GLELD 60

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
             V N L++LY KCG    AR IF  M  +RDLVSW+A++S + +               
Sbjct: 61  SVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFAN--------------- 105

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
             N + W              + +  F  M   GF P +Y FA  I +C+       G  
Sbjct: 106 --NSMEW--------------QAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEI 149

Query: 440 LHAQLVHSGY-DSSLSAGNALITMYAR-CGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           ++  +V +GY ++ +  G  LI M+ +  G + +A  VF+ MP  + V+W  MI    Q 
Sbjct: 150 IYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQL 209

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
           G    AI+L+  M   G +PDR T+ +VLSAC   GL+  G++
Sbjct: 210 GCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQ 252



 Score = 43.9 bits (102), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
              +H  ++  G+K  + I N LI +Y +   +  A  +F+E+   ++++ T++I  ++ 
Sbjct: 456 GEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAK 515

Query: 94  SDNVKLAREMFNK---TPLKMRDTVFYNAMITAYSH 126
                 A EMF+K   T  K  + + Y A+++A SH
Sbjct: 516 HGFATRALEMFHKMLETGTK-PNEITYVAVLSACSH 550


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 287/801 (35%), Positives = 444/801 (55%), Gaps = 112/801 (13%)

Query: 65  KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
           KLV+ R L     + D V   TLI+ YS   + + AR +F     K RD V ++AM++ +
Sbjct: 64  KLVH-RKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNK-RDLVSWSAMVSCF 121

Query: 125 SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL-----ALIVEEEKQCMQMHCTVVKS 179
           ++NS    AI  F DM      P+ + F +V+ A      A + E       ++  VVK+
Sbjct: 122 ANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGE------IIYGFVVKT 175

Query: 180 GTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND 239
           G       L A + V  + +   FV     +G+A +VFD+MPER+ ++WT M+T + +  
Sbjct: 176 G------YLEADVCVGCELIDM-FVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQ-- 226

Query: 240 YLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFR 299
            L  AR+ +D       +  +  +SGYV             D FTY+SV+SAC   GL  
Sbjct: 227 -LGCARDAID-------LFLDMELSGYVP------------DRFTYSSVLSACTELGLLA 266

Query: 300 LGKQVHAYLL------------------------------RTEAKPTPEFSLPVNNALVT 329
           LGKQ+H+ ++                              R   +  PE ++    A++T
Sbjct: 267 LGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIIT 326

Query: 330 LYWKCGKVN-EARDIFNQMPE--------------------------RDLVSW------- 355
            Y + G+ + EA ++F +M                              + S+       
Sbjct: 327 AYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIA 386

Query: 356 ------NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
                 N+++S Y  +G +++A+  F+ + E+NL+S+  ++ G A+N   EE   LF+++
Sbjct: 387 SVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEI 446

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
              G     + FA  ++  A +GA+  G Q+H +L+  GY S+    NALI+MY+RCG +
Sbjct: 447 ADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNI 506

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           EAA  VFN M + + +SW +MI    +HG   RA+E++ +ML+ G  P+ IT++ VLSAC
Sbjct: 507 EAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSAC 566

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
           +H G++ EG+++F +M+  +GI P  +HYA  +DLL R+G   EA + I+S+P    A +
Sbjct: 567 SHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALV 626

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
           W  LL  CR+HGN +LG  AAE + +  P     Y+LLSN++A+ G+W D  ++RK M++
Sbjct: 627 WRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKE 686

Query: 650 RGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHD 709
           R + KE GCSWIEV+N+VH F V +T+HP+A  +Y+ L+QL  +++++GY+PDT FVLHD
Sbjct: 687 RNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHD 746

Query: 710 MESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIV 769
           +E +QKE  L  HSEK+AVAFGL+       +R+ KNLR+CGDCH A K++S   GREIV
Sbjct: 747 IEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIV 806

Query: 770 VRDGKRFHHFRDGKCSCGDYW 790
           VRD  RFHH ++G CSC DYW
Sbjct: 807 VRDSNRFHHIKNGVCSCNDYW 827



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 132/283 (46%), Gaps = 42/283 (14%)

Query: 265 GYVHRELKMLMLRIQL----DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
           G +H     L L  Q     D  TY+ ++ +C     F+LGK VH  L+++      E  
Sbjct: 23  GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQS----GLELD 78

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
             V N L++LY KCG    AR IF  M  +RDLVSW+A++S + +               
Sbjct: 79  SVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFAN--------------- 123

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
             N + W              + +  F  M   GF P +Y FA  I +C+       G  
Sbjct: 124 --NSMEW--------------QAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEI 167

Query: 440 LHAQLVHSGY-DSSLSAGNALITMYAR-CGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           ++  +V +GY ++ +  G  LI M+ +  G + +A  VF+ MP  + V+W  MI    Q 
Sbjct: 168 IYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQL 227

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
           G    AI+L+  M   G +PDR T+ +VLSAC   GL+  G++
Sbjct: 228 GCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQ 270



 Score = 43.5 bits (101), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
              +H  ++  G+K  + I N LI +Y +   +  A  +F+E+   ++++ T++I  ++ 
Sbjct: 474 GEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAK 533

Query: 94  SDNVKLAREMFNK---TPLKMRDTVFYNAMITAYSH 126
                 A EMF+K   T  K  + + Y A+++A SH
Sbjct: 534 HGFATRALEMFHKMLETGTK-PNEITYVAVLSACSH 568


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 290/807 (35%), Positives = 436/807 (54%), Gaps = 105/807 (13%)

Query: 57  IDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPL--KMRDT 114
           +++Y K      AR L  +  +PD+V+ + LI+ Y  +   + A   + +  L     + 
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 115 VFYNAMITAYSHNSNGHAAIELFR-----DMRRDDVKPDNFTFTSVLSALALIVEEEKQC 169
             +++++   S   N     ++ R     +M    + P+ F+ ++VL+A A + E+E   
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGL-EDENYG 207

Query: 170 MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWT 229
           M++H  ++K G        NAL+ +Y K              AA  VF E+P+ D +SW 
Sbjct: 208 MKVHGYLIKLGYDSDPFSANALLDMYAKSGCPE---------AAIAVFYEIPKPDIVSWN 258

Query: 230 TMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVI 289
            ++ G V ++  D A + L                       KM   R+    FT +S +
Sbjct: 259 AVIAGCVLHEKNDLALKLLG----------------------KMGSYRVAPSMFTLSSAL 296

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKP---------------------------TPEFSLP 322
            ACA  GL +LG+Q+H+ L++ + +P                            P   + 
Sbjct: 297 KACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVI 356

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDL------------------------------ 352
           V N++++ Y  CG   EA  +F  M +  L                              
Sbjct: 357 VWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTIS 416

Query: 353 ---------VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
                       N++L +Y    L+++A  +FE     +L+++T MI+  +Q G GEE L
Sbjct: 417 IKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEAL 476

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
           K++ +M+    KP  + F+    +CA L A E G+Q+H  ++  G  S + AGN+L+ MY
Sbjct: 477 KMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMY 536

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
           A+CG ++ A+C+FN +     VSW+AMI  L QHG+G +A++L+ QMLK GILP+ IT +
Sbjct: 537 AKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLV 596

Query: 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF 583
           +VLSACNHAGLV E RR+F  M   +GI P ++HYA  +D+L R G+  EA  ++  +PF
Sbjct: 597 SVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPF 656

Query: 584 KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARV 643
           + SA +W ALL   RIH NI+LG  AAE L  L P  +GT++LL+N+YA+ G WD+ A+V
Sbjct: 657 QASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNVAKV 716

Query: 644 RKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDT 703
           R+ M++  VKKEPG SWIE+ +KV+ F+V D +HP ++ +Y  L+ L   +   GYVP  
Sbjct: 717 RRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEIYVKLDDLRERLTSAGYVPMI 776

Query: 704 KFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKV 763
           +  LHD+E  +KE  L  HSEKLAVAFGL+  P GA +RV KNLR+C DCH AFKF+SKV
Sbjct: 777 ETDLHDVEQIEKEQLLWHHSEKLAVAFGLIATPPGAPIRVKKNLRVCIDCHTAFKFISKV 836

Query: 764 VGREIVVRDGKRFHHFRDGKCSCGDYW 790
             REI+VRD  RFHHFRDG CSCGDYW
Sbjct: 837 ASREIIVRDINRFHHFRDGSCSCGDYW 863



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 142/335 (42%), Gaps = 75/335 (22%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
           +     VH   I SG++   ++ N L+D Y K   L  A  +F+  P  D+VA T++I  
Sbjct: 406 NGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMI-- 463

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
                                          TAYS    G  A++++  M+  D+KPD F
Sbjct: 464 -------------------------------TAYSQYGLGEEALKMYLRMQDRDIKPDAF 492

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL--NALISVYVKCVSSPFVSSRS 208
            F+S+ +A A +   E Q  Q+H  V+K   GL + V   N+L+++Y KC S        
Sbjct: 493 IFSSLFNACANLSAYE-QGKQIHVHVLK--CGLLSDVFAGNSLVNMYAKCGS-------- 541

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
            +  A  +F+E+  R  +SW+ M+ G  ++ +   A +    M +N G+  N        
Sbjct: 542 -IDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKN-GILPN-------- 591

Query: 269 RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNAL 327
                          T  SV+SAC ++GL    ++    + +     PT E        +
Sbjct: 592 -------------HITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHY----ACM 634

Query: 328 VTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
           V +  + G+++EA  +  +MP +     W A+L A
Sbjct: 635 VDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGA 669



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 87/219 (39%), Gaps = 53/219 (24%)

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
           + +G  +HA+++       L   N L+ +Y++C     A  +       D VSW+A+I+ 
Sbjct: 66  VSSGMAIHARIIRL---GLLGLRNRLVNLYSKCQCFRVARKLVIDSSEPDLVSWSALISG 122

Query: 494 LGQHGNGARA----------------------------------------IELYEQMLKE 513
             Q+G G  A                                        + L  +M+  
Sbjct: 123 YVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQIHRVALVTEMIST 182

Query: 514 GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED----HYARFIDLLCRAG 569
           GI P+  +  TVL+AC  AGL  E   Y   +HG Y I  G D         +D+  ++G
Sbjct: 183 GISPNEFSLSTVLNAC--AGL--EDENYGMKVHG-YLIKLGYDSDPFSANALLDMYAKSG 237

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
               A  V   +P KP    W A++AGC +H   DL ++
Sbjct: 238 CPEAAIAVFYEIP-KPDIVSWNAVIAGCVLHEKNDLALK 275


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 280/812 (34%), Positives = 435/812 (53%), Gaps = 101/812 (12%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           + + V+ +M+S GF+    +   ++D++ K  ++  AR  F+EI   D+     +++ Y+
Sbjct: 208 VGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYT 267

Query: 93  ASDNVKLAREMFNKTPLK--MRDTVFYNAMITAYSHN----------------------- 127
           +    K A +  +   L     D V +NA+I+ Y+ +                       
Sbjct: 268 SKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNV 327

Query: 128 -----------SNGH--AAIELFRDMRRDDVKPDNFTFTSVLSALA-LIVEEEKQCMQMH 173
                       NG+   A+ +FR M  + VKP++ T  S +SA   L +    + +  +
Sbjct: 328 VSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGY 387

Query: 174 CTVVKSGTGLFTSVL--NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           C  V+    L + +L  N+L+  Y KC S         +  ARR F  + + D +SW  M
Sbjct: 388 CIKVEE---LDSDLLVGNSLVDYYAKCRS---------VEVARRKFGMIKQTDLVSWNAM 435

Query: 232 MTGYVKNDYLDAAREFLDGMS----ENVGVAWNALISGYVHR-------ELKMLMLRIQL 280
           + GY      + A E L  M     E   + WN L++G+          E    M  + +
Sbjct: 436 LAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGM 495

Query: 281 DEFTYT--SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
           D  T T    ++AC      +LGK++H Y+LR       E S  V +AL+++Y  C    
Sbjct: 496 DPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHI----ELSTGVGSALISMYSGCDS-- 549

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGY 398
                                        ++ A S+F  +  R+++ W  +IS  AQ+G 
Sbjct: 550 -----------------------------LEVACSVFSELSTRDVVVWNSIISACAQSGR 580

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
               L L  +M L   +        A+ +C+ L AL  G+++H  ++  G D+     N+
Sbjct: 581 SVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNS 640

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           LI MY RCG ++ +  +F+ MP  D VSWN MI+  G HG G  A+ L++Q    G+ P+
Sbjct: 641 LIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPN 700

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVI 578
            ITF  +LSAC+H+GL++EG +YF+ M   Y + P  + YA  +DLL RAG+F+E  + I
Sbjct: 701 HITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFI 760

Query: 579 DSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWD 638
           + +PF+P+A +W +LL  CRIH N DL   AA  LF+L P  +G YVL++N+Y+  GRW+
Sbjct: 761 EKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWE 820

Query: 639 DAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLG 698
           DAA++R LM++RGV K PGCSWIEV  K+H F+V DT+HP  + +   +E L  +++++G
Sbjct: 821 DAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIG 880

Query: 699 YVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFK 758
           YVPDT FVL D++ D+KE++L  HSEK+A+AFGL+    G  +R++KNLR+CGDCH+A K
Sbjct: 881 YVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATK 940

Query: 759 FMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           F+SKV  R+I++RD  RFHHF DG CSCGDYW
Sbjct: 941 FISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 972



 Score =  215 bits (548), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 173/692 (25%), Positives = 308/692 (44%), Gaps = 114/692 (16%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           YAS LQ C  R      L   VHA ++ +G    E + +RL+++YC++            
Sbjct: 92  YASILQKC--RKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQT------------ 137

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
                                V+ AR MF+K  +  R+   + A++  Y    +    I+
Sbjct: 138 -------------------GCVEDARRMFDK--MSERNVFSWTAIMEMYCGLGDYEETIK 176

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LF  M  + V+PD+F F  V  A + + +  +    ++  ++  G    + V  +++ ++
Sbjct: 177 LFYLMVNEGVRPDHFVFPKVFKACSEL-KNYRVGKDVYDYMLSIGFEGNSCVKGSILDMF 235

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV-KNDYLDAAREFLDGMSEN 254
           +KC           M  ARR F+E+  +D   W  M++GY  K ++  A +   D     
Sbjct: 236 IKC---------GRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSG 286

Query: 255 VG---VAWNALISGYVHR-----------EL----------------------------- 271
           V    V WNA+ISGY              E+                             
Sbjct: 287 VKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEA 346

Query: 272 -----KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                KM++  ++ +  T  S +SAC N  L R G+++H Y ++ E   +    L V N+
Sbjct: 347 LSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDS---DLLVGNS 403

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR----ERN 382
           LV  Y KC  V  AR  F  + + DLVSWNA+L+ Y   G  +EA  L   M+    E +
Sbjct: 404 LVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPD 463

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
           +++W  +++G  Q G G+  L+ F +M   G  P     +GA+ +C  +  L+ G+++H 
Sbjct: 464 IITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHG 523

Query: 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
            ++ +  + S   G+ALI+MY+ C  +E A  VF+ +   D V WN++I+A  Q G    
Sbjct: 524 YVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVN 583

Query: 503 AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562
           A++L  +M    +  + +T ++ L AC+    +++G+   + +    G+          I
Sbjct: 584 ALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFII-RCGLDTCNFILNSLI 642

Query: 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ------L 616
           D+  R G   +++ + D +P +     W  +++   +HG    G+ A   LFQ      L
Sbjct: 643 DMYGRCGSIQKSRRIFDLMPQRDLVS-WNVMISVYGMHG---FGMDAV-NLFQQFRTMGL 697

Query: 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648
            P+H  T+  L +  ++ G  ++  +  K+M+
Sbjct: 698 KPNHI-TFTNLLSACSHSGLIEEGWKYFKMMK 728



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/410 (23%), Positives = 163/410 (39%), Gaps = 79/410 (19%)

Query: 199 VSSPFV--SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           ++SPF   S+ ++          +P R+     +  T       L  AR+ + G S    
Sbjct: 4   ITSPFALNSNFAIQPKGTSPLQTLPTRNCCIVASTNTKSQNLRKLTNARQRITGFSGGGS 63

Query: 257 VAWNALISGYVHRELKMLMLRIQL---DEFT--YTSVISACANSGLFRLGKQVHAYLLRT 311
           V  N +++        ML+  + L   DE    Y S++  C      RLG QVHA L+  
Sbjct: 64  VHRNGVLNNAA-----MLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLV-- 116

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
                      VN                 D+   +  R       +L  Y   G +++A
Sbjct: 117 -----------VNGV---------------DVCEFLGSR-------LLEVYCQTGCVEDA 143

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
           + +F+ M ERN+ SWT ++      G  EE +KLF  M  EG +P  + F     +C+ L
Sbjct: 144 RRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSEL 203

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
                G+ ++  ++  G++ +     +++ M+ +CG ++ A   F  +   D   WN M+
Sbjct: 204 KNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMV 263

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
           +     G   +A++    M   G+ PD++T+  ++S    +G  +E  +YF  M G    
Sbjct: 264 SGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGG---- 319

Query: 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
                                  KD      FKP+   W AL+AG   +G
Sbjct: 320 ----------------------LKD------FKPNVVSWTALIAGSEQNG 341



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 109/250 (43%), Gaps = 5/250 (2%)

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
           +NG       L S M L     C   +A  +  C  L  L  G Q+HAQLV +G D    
Sbjct: 66  RNGVLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEF 125

Query: 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
            G+ L+ +Y + G VE A  +F+ M   +  SW A++      G+    I+L+  M+ EG
Sbjct: 126 LGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEG 185

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
           + PD   F  V  AC+     + G+  ++ M    G           +D+  + G+   A
Sbjct: 186 VRPDHFVFPKVFKACSELKNYRVGKDVYDYML-SIGFEGNSCVKGSILDMFIKCGRMDIA 244

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE--QLFQLMPHHAGTYVLLSNMYA 632
           +   + + FK    +W  +++G    G     ++     +L  + P       ++S  YA
Sbjct: 245 RRFFEEIEFK-DVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISG-YA 302

Query: 633 NLGRWDDAAR 642
             G++++A++
Sbjct: 303 QSGQFEEASK 312


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 281/819 (34%), Positives = 442/819 (53%), Gaps = 137/819 (16%)

Query: 52  IINRLI--DIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPL 109
           + +R++   ++C+ +K  +           D+   T+L+  Y  +++V+    +F++  +
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVE---------DVSVGTSLVDMYMKTESVEDGERVFDE--M 153

Query: 110 KMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC 169
           ++++ V + +++  Y  N     A++LF  M+ + +KP+ FTF +VL  LA     EK  
Sbjct: 154 RVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKG- 212

Query: 170 MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA-ARRVFDEMPERDELSW 228
           +Q+H  V+KSG      V N+++++Y          S+SLM + A+ VFD M  R+    
Sbjct: 213 VQVHTMVIKSGLDSTIFVGNSMVNMY----------SKSLMVSDAKAVFDSMENRN---- 258

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQ 279
                                       V+WN++I+G+V   L         +M +  ++
Sbjct: 259 ---------------------------AVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVK 291

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC----- 334
           L +  + +VI  CAN       KQ+H  ++    K   +F L +  AL+  Y KC     
Sbjct: 292 LTQTIFATVIKLCANIKEMSFAKQLHCQVI----KNGSDFDLNIKTALMVAYSKCSEIDD 347

Query: 335 ---------------------------GKVNEARDIFNQMPERDL----VSWNAILSA-- 361
                                      G+ + A ++F QM    +     +++ IL+A  
Sbjct: 348 AFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANA 407

Query: 362 -----------------------------YVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
                                        Y   G  +EA  +FE + E+++++W+ M+SG
Sbjct: 408 AVSPSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSG 467

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG-LGALENGRQLHAQLVHSGYDS 451
            AQ G  E  +K+F Q+  EG +P ++ F+  + +CA    ++E G+Q H+  + SG+ +
Sbjct: 468 YAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSN 527

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
           +L   +AL+TMYA+ G +E+AN VF    + D VSWN+MI+   QHG G ++++++E+M 
Sbjct: 528 ALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMR 587

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571
            + +  D ITF+ V+SAC HAGLV EG+RYF+ M   Y I P  +HY+  +DL  RAG  
Sbjct: 588 SKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGML 647

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631
            +A D+I+ +PF   A IW  LLA CR+H N+ LG  AAE+L  L P  +  YVLLSN+Y
Sbjct: 648 EKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIY 707

Query: 632 ANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLV 691
           A  G W + A+VRKLM  + VKKE G SWIEV NK   F+  D +HP++  +Y  LE+L 
Sbjct: 708 ATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELS 767

Query: 692 LEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICG 751
           + ++  GY PDTK+VLHD+E + KE  LS HSE+LA+AFGL+  P G  ++++KNLR+CG
Sbjct: 768 IRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCG 827

Query: 752 DCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           DCH   K +SK+ GR+IVVRD  RFHHF+ G CSCGDYW
Sbjct: 828 DCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 866



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 135/522 (25%), Positives = 235/522 (45%), Gaps = 90/522 (17%)

Query: 100 AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL 159
           ++++F++TP   +     N ++  +S N     A+ LF  +RR     D  + + VL   
Sbjct: 45  SQQLFDETP--QQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVC 102

Query: 160 ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDE 219
             + +      Q+HC  +K G     SV  +L+ +Y+K  S         +    RVFDE
Sbjct: 103 GCLFDRIVG-KQVHCQCIKCGFVEDVSVGTSLVDMYMKTES---------VEDGERVFDE 152

Query: 220 MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQ 279
           M  ++ +SWT+++ GY +N   + A +                         +M +  I+
Sbjct: 153 MRVKNVVSWTSLLAGYRQNGLNEQALKLFS----------------------QMQLEGIK 190

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            + FT+ +V+   A  G    G QVH  ++++    T    + V N++V +Y K   V++
Sbjct: 191 PNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDST----IFVGNSMVNMYSKSLMVSD 246

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
           A+ +F+ M  R+ VSWN++++ +V+ GL  EA                            
Sbjct: 247 AKAVFDSMENRNAVSWNSMIAGFVTNGLDLEA---------------------------- 278

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
               +LF +MRLEG K     FA  I  CA +  +   +QLH Q++ +G D  L+   AL
Sbjct: 279 ---FELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTAL 335

Query: 460 ITMYARCGVVEAANCVFNTMPNVDS-VSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           +  Y++C  ++ A  +F  M  V + VSW A+I+   Q+G   RA+ L+ QM +EG+ P+
Sbjct: 336 MVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPN 395

Query: 519 RITFLTVLSACN-------HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571
             T+ T+L+A         HA +VK         + P       D Y++        G  
Sbjct: 396 HFTYSTILTANAAVSPSQIHALVVKTNYE-----NSPSVGTALSDSYSKI-------GDA 443

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
           +EA  + + +  K     W A+L+G    G+I+  ++   QL
Sbjct: 444 NEAAKIFELIDEKDIVA-WSAMLSGYAQMGDIEGAVKIFLQL 484



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 118/463 (25%), Positives = 214/463 (46%), Gaps = 81/463 (17%)

Query: 45  GFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQP----DIVARTTLIAAYSASDNVKLA 100
           G K  + I   +I +     ++ +A+ L  ++ +     D+  +T L+ AYS    +  A
Sbjct: 289 GVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDA 348

Query: 101 REMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA 160
            ++F      +++ V + A+I+ Y  N     A+ LF  MRR+ V+P++FT++++L+A A
Sbjct: 349 FKLFCMMH-GVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANA 407

Query: 161 LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEM 220
            +        Q+H  VVK+      SV  AL   Y K   +           A ++F+ +
Sbjct: 408 AVSPS-----QIHALVVKTNYENSPSVGTALSDSYSKIGDA---------NEAAKIFELI 453

Query: 221 PERDELSWTTMMTGYVK-NDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQ 279
            E+D ++W+ M++GY +  D   A + FL    E V                       +
Sbjct: 454 DEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGV-----------------------E 490

Query: 280 LDEFTYTSVISACAN-SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
            +EFT++SV++ACA  +     GKQ H+  +++        +L V++ALVT+Y K G + 
Sbjct: 491 PNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSN----ALCVSSALVTMYAKRGNIE 546

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGY 398
            A ++F +  +RDLVSWN+++S Y   G   ++  +FE MR +NL               
Sbjct: 547 SANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNL--------------- 591

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD-SSLSAGN 457
                       L+G       F G I++C   G +  G++    +V   +   ++   +
Sbjct: 592 -----------ELDGI-----TFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYS 635

Query: 458 ALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
            ++ +Y+R G++E A  + N MP    +  W  ++AA   H N
Sbjct: 636 CMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLN 678



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 120/246 (48%), Gaps = 5/246 (2%)

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
           ++ LF+   ++ L     ++   ++N   +E L LF  +R  G      + +  +  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
           L     G+Q+H Q +  G+   +S G +L+ MY +   VE    VF+ M   + VSW ++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
           +A   Q+G   +A++L+ QM  EGI P+  TF  VL      G V++G +   TM    G
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKSG 223

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
           +          +++  ++   S+AK V DS+  + +A  W +++AG   +G   L ++A 
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENR-NAVSWNSMIAGFVTNG---LDLEAF 279

Query: 611 EQLFQL 616
           E  +++
Sbjct: 280 ELFYRM 285


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 288/777 (37%), Positives = 428/777 (55%), Gaps = 99/777 (12%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           DI     L+A Y     V  AR +F++   + R+TV +N +++AY  N     A+++F +
Sbjct: 134 DIFVANALVAMYGGFGFVDEARMVFDEAGCE-RNTVSWNGLMSAYVKNDRCSHAVKVFGE 192

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M    V+P+ F F+ V++A     + E    ++H  V+++G        NAL+ +Y K  
Sbjct: 193 MVWGGVQPNEFGFSCVVNACTGSRDLEAG-RKVHAMVIRTGYDKDVFTANALVDMYSKLG 251

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                     +  A  VF ++PE D +SW   ++G V + +   A E L           
Sbjct: 252 D---------IRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELL----------- 291

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP---- 315
                      L+M    +  + FT +S++ ACA SG F LG+Q+H ++++  A      
Sbjct: 292 -----------LQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYI 340

Query: 316 -----------------------TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL 352
                                   P+  L + NAL++      +  EA  +F +M +   
Sbjct: 341 AFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGF 400

Query: 353 VSWNAILSA------------------------------YVSAGLIDE---------AKS 373
                 L+A                              +V  GLID          A  
Sbjct: 401 DVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYR 460

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
           +FE     +++++T MI+ L+Q  +GE+ +KLF +M  +G  P  +  +  + +CA L A
Sbjct: 461 VFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSA 520

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
            E G+Q+HA L+   + S + AGNAL+  YA+CG +E A+  F+ +P    VSW+AMI  
Sbjct: 521 YEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGG 580

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
           L QHG+G RA++++ +M+ E I P+ IT  +VL ACNHAGLV E +RYF +M   +GI  
Sbjct: 581 LAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIER 640

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
            E+HYA  IDLL RAGK  +A ++++S+PF+ +A +W ALLA  R+H + +LG  AAE+L
Sbjct: 641 TEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKL 700

Query: 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVD 673
           F L P  +GT+VLL+N YA+ G WDD A+VRKLM+D  VKKEP  SW+E+ +KVH F+V 
Sbjct: 701 FILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVHTFIVG 760

Query: 674 DTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLM 733
           D +HP A+ +Y  L++L   M K GYVP+ +  LHD++ ++KE  LS HSE+LAVAF L+
Sbjct: 761 DKSHPRARDIYAKLDELGDLMTKAGYVPNVEVDLHDVDKNEKELLLSHHSERLAVAFALI 820

Query: 734 KLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             P GA +RV KNLRIC DCH AFKF+S +V REI++RD  RFHHFRDG CSC DYW
Sbjct: 821 STPAGAPIRVKKNLRICRDCHAAFKFISDIVSREIIIRDINRFHHFRDGACSCRDYW 877



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 137/454 (30%), Positives = 208/454 (45%), Gaps = 94/454 (20%)

Query: 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS 227
           Q   +H  ++KSG  LF    N L+S Y KC          L G+ARRVFDE+P+   +S
Sbjct: 22  QGAHIHAHLLKSG--LFAVFRNHLLSFYSKC---------RLPGSARRVFDEIPDPCHVS 70

Query: 228 WTTMMTGYVKN----DYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEF 283
           W++++T Y  N    D L A R                           M    ++ +EF
Sbjct: 71  WSSLVTAYSNNAMPRDALGAFRS--------------------------MRSCSVRCNEF 104

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
               V+    ++G    G Q+HA  + T         + V NALV +Y   G V+EAR +
Sbjct: 105 VLPVVLKCAPDAG---FGTQLHALAMATGLGG----DIFVANALVAMYGGFGFVDEARMV 157

Query: 344 FNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG 402
           F++   ER+ VSWN ++SAYV                               +N      
Sbjct: 158 FDEAGCERNTVSWNGLMSAYV-------------------------------KNDRCSHA 186

Query: 403 LKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITM 462
           +K+F +M   G +P ++ F+  + +C G   LE GR++HA ++ +GYD  +   NAL+ M
Sbjct: 187 VKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDM 246

Query: 463 YARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF 522
           Y++ G +  A  VF  +P  D VSWNA I+    HG+   A+EL  QM   G++P+  T 
Sbjct: 247 YSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTL 306

Query: 523 LTVLSACNHAGLVKEGRRYFETMHG-PYGIPPGEDHYARF--IDLLCRAGKFSEAKDVID 579
            ++L AC  +G    GR+    +HG         D+Y  F  +D+  + G   +AK V D
Sbjct: 307 SSILKACAGSGAFNLGRQ----IHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFD 362

Query: 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
            +P +    +W AL++GC        G Q AE L
Sbjct: 363 WIP-QRDLVLWNALISGC------SHGAQHAEAL 389



 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 146/527 (27%), Positives = 221/527 (41%), Gaps = 115/527 (21%)

Query: 3   MKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCK 62
           M++ + I  L  RYA+   L    +         +HAH++ SG        N L+  Y K
Sbjct: 1   MRSLETIGPLLTRYAATQSLLQGAH---------IHAHLLKSGLFAV--FRNHLLSFYSK 49

Query: 63  SLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
                 AR +FDEIP P  V+ ++L                                 +T
Sbjct: 50  CRLPGSARRVFDEIPDPCHVSWSSL---------------------------------VT 76

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTG 182
           AYS+N+    A+  FR MR   V+ + F    VL        +     Q+H   + +G G
Sbjct: 77  AYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKC----APDAGFGTQLHALAMATGLG 132

Query: 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMP-ERDELSWTTMMTGYVKNDYL 241
               V NAL+++Y              +  AR VFDE   ER+ +SW  +M+ YVKND  
Sbjct: 133 GDIFVANALVAMY---------GGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRC 183

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
             A +    M       W                  +Q +EF ++ V++AC  S     G
Sbjct: 184 SHAVKVFGEM------VWGG----------------VQPNEFGFSCVVNACTGSRDLEAG 221

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
           ++VHA ++RT         +   NALV +Y K G +  A  +F ++PE D+VSWNA    
Sbjct: 222 RKVHAMVIRTGYDK----DVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAF--- 274

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
                                       ISG   +G+ +  L+L  QM+  G  P  +  
Sbjct: 275 ----------------------------ISGCVLHGHDQHALELLLQMKSSGLVPNVFTL 306

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
           +  + +CAG GA   GRQ+H  +V +  DS       L+ MYA+ G+++ A  VF+ +P 
Sbjct: 307 SSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQ 366

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
            D V WNA+I+        A A+ L+ +M KEG   +R T   VL +
Sbjct: 367 RDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKS 413



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 118/469 (25%), Positives = 195/469 (41%), Gaps = 104/469 (22%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           +L R +H  M+ +      +I   L+D+Y K   L  A+ +FD IPQ             
Sbjct: 320 NLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQ------------- 366

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                               RD V +NA+I+  SH +    A+ LF  MR++    +  T
Sbjct: 367 --------------------RDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTT 406

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             +VL + A + E      Q+H    K G    + V+N LI  Y KC           + 
Sbjct: 407 LAAVLKSTASL-EAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKC---------DCLN 456

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVAWNALISGYVHRE 270
            A RVF++    D +++T+M+T   + D+  DA + F++                     
Sbjct: 457 YAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFME--------------------- 495

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
             ML   +  D F  +S+++ACA+   +  GKQVHA+L++ +        +   NALV  
Sbjct: 496 --MLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMS----DVFAGNALVYT 549

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y KCG + +A   F+ +PE+ +VSW+A                               MI
Sbjct: 550 YAKCGSIEDADLAFSGLPEKGVVSWSA-------------------------------MI 578

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL-ENGRQLHAQLVHSGY 449
            GLAQ+G+G+  L +F +M  E   P        + +C   G + E  R  ++     G 
Sbjct: 579 GGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGI 638

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQH 497
           + +      +I +  R G ++ A  + N+MP   ++  W A++AA   H
Sbjct: 639 ERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVH 687


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  510 bits (1314), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 274/701 (39%), Positives = 399/701 (56%), Gaps = 61/701 (8%)

Query: 101 REMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA-L 159
           R   N   L   D  F  A +           A+EL   + R D +P    ++++++A +
Sbjct: 43  RNHLNPKDLVSEDNKFEEA-VDVLCQQKRVKEAVEL---LHRTDHRPSARVYSTLIAACV 98

Query: 160 ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDE 219
                E  + +  H        G+F S  N L+ +Y KC S         +  A+ +FDE
Sbjct: 99  RHRALELGRRVHAHTKASNFVPGVFIS--NRLLDMYAKCGS---------LVDAQMLFDE 147

Query: 220 MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR-------ELK 272
           M  RD  SW TM+ GY K   L+ AR+  D M +    +WNA ISGYV         EL 
Sbjct: 148 MGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELF 207

Query: 273 MLMLRIQL---DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
            +M R +    ++FT +S ++A A     RLGK++H YL+RTE                 
Sbjct: 208 RVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELN--------------- 252

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
                                D V W+A+L  Y   G +DEA+ +F+ M++R+++SWT M
Sbjct: 253 --------------------LDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTM 292

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           I    ++G  EEG  LF  +   G +P +Y FAG + +CA   A   G+++H  ++H+GY
Sbjct: 293 IHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGY 352

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
           D    A +AL+ MY++CG    A  VFN M   D VSW ++I    Q+G    A+  +E 
Sbjct: 353 DPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFEL 412

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
           +L+ G  PD++T++ VLSAC HAGLV +G  YF ++   +G+    DHYA  IDLL R+G
Sbjct: 413 LLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSG 472

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629
           +F EA+++ID++P KP   +W +LL GCRIHGN++L  +AA+ L+++ P +  TY+ L+N
Sbjct: 473 RFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPENPATYITLAN 532

Query: 630 MYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQ 689
           +YAN G W + A VRK M + G+ K+PG SWIE+  +VHVFLV DT+HP+   ++++L +
Sbjct: 533 IYANAGLWSEVANVRKDMDNMGIVKKPGKSWIEIKRQVHVFLVGDTSHPKTSDIHEFLGE 592

Query: 690 LVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRI 749
           L  ++++ GYVPDT FVLHD+E +QKE  L  HSEKLAV FG++  P G  ++V KNLR 
Sbjct: 593 LSKKIKEEGYVPDTNFVLHDVEEEQKEQNLVYHSEKLAVVFGIISTPPGTPIKVFKNLRT 652

Query: 750 CGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           C DCH A K++SK+V R+I VRD  RFH F DG CSC DYW
Sbjct: 653 CVDCHTAIKYISKIVQRKITVRDSNRFHCFEDGSCSCKDYW 693



 Score =  186 bits (471), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 147/512 (28%), Positives = 236/512 (46%), Gaps = 81/512 (15%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R VHAH  +S F P   I NRL+D+Y K   LV A+ LFDE+   D+ +  T+I  Y+
Sbjct: 105 LGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYA 164

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
               ++ AR++F++ P   RD   +NA I+ Y  ++    A+ELFR M+R +    N   
Sbjct: 165 KLGRLEQARKLFDEMP--QRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFT 222

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            S   A +  +   +   ++H  ++++   L   V +AL+ +Y KC S         +  
Sbjct: 223 LSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGS---------LDE 273

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           AR +FD+M +RD +SWTTM+            R F DG  E   + +  L+   V     
Sbjct: 274 ARGIFDQMKDRDVVSWTTMI-----------HRCFEDGRREEGFLLFRDLMQSGV----- 317

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                 + +E+T+  V++ACA+     LGK+VH Y++     P   F++   +ALV +Y 
Sbjct: 318 ------RPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPG-SFAI---SALVHMYS 367

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           KCG    AR +FN+M + DLVSW +++  Y   G  DEA   FE + +            
Sbjct: 368 KCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQ------------ 415

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ-LHAQLVHSGYDS 451
                               G KP    + G +++C   G ++ G +  H+     G   
Sbjct: 416 -------------------SGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMH 456

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN---GARAIE-L 506
           +      +I + AR G  + A  + + MP   D   W +++     HGN     RA + L
Sbjct: 457 TADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKAL 516

Query: 507 YEQMLKEGILPDR-ITFLTVLSACNHAGLVKE 537
           YE      I P+   T++T+ +   +AGL  E
Sbjct: 517 YE------IEPENPATYITLANIYANAGLWSE 542


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 287/741 (38%), Positives = 405/741 (54%), Gaps = 96/741 (12%)

Query: 88  IAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147
           IA Y+ +  +  AR++F++TPL  R    +NAM+ AY        A+ LF  M      P
Sbjct: 29  IACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKM------P 82

Query: 148 DNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSR 207
              T +                                   N LIS ++K          
Sbjct: 83  QRNTVS----------------------------------WNGLISGHIK---------N 99

Query: 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKN-DYLDAAREFLDGMSENVGVAWNALISGY 266
            ++  ARRVFD MP+R+ +SWT+M+ GYV+N D  +A R F     +NV V+W  ++ G 
Sbjct: 100 GMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNV-VSWTVMLGGL 158

Query: 267 VHR-----ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
           +         K+  +  + D    T++I      G  RL +       R      P+ ++
Sbjct: 159 LQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEG--RLDEA------RALFDEMPKRNV 210

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM--- 378
               A+V+ Y + GKV+ AR +F  MPER+ VSW A+L  Y  +G + EA SLF+AM   
Sbjct: 211 VTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMREASSLFDAMPVK 270

Query: 379 ----------------------------RERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
                                       +ER+  +W+ MI    + GY  E L LF +M+
Sbjct: 271 PVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQ 330

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
            EG      +    ++ C  L +L++G+Q+HAQLV S +D  L   + LITMY +CG + 
Sbjct: 331 REGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLV 390

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
            A  VFN  P  D V WN+MI    QHG G  A+ ++  M   G+ PD +TF+ VLSAC+
Sbjct: 391 RAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACS 450

Query: 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590
           ++G VKEG   FETM   Y + PG +HYA  +DLL RA + +EA  +++ +P +P A +W
Sbjct: 451 YSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVW 510

Query: 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650
            ALL  CR H  +DL   A E+L QL P +AG YVLLSNMYA  GRW D   +R+ ++ R
Sbjct: 511 GALLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKAR 570

Query: 651 GVKKEPGCSWIEVDNKVHVFLVDDT-AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHD 709
            V K PGCSWIEV+ KVH+F   D+  HPE   + K LE+L   +R+ GY PD  FVLHD
Sbjct: 571 SVTKLPGCSWIEVEKKVHMFTGGDSKGHPEQPIIMKMLEKLGGLLREAGYCPDGSFVLHD 630

Query: 710 MESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIV 769
           ++ ++K ++L  HSEKLAVA+GL+K+P G  +RV+KNLR+CGDCH+A K ++KV GREI+
Sbjct: 631 VDEEEKTHSLGYHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREII 690

Query: 770 VRDGKRFHHFRDGKCSCGDYW 790
           +RD  RFHHF+DG CSC DYW
Sbjct: 691 LRDANRFHHFKDGHCSCKDYW 711



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/436 (26%), Positives = 188/436 (43%), Gaps = 89/436 (20%)

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           AR LFD +P+ D+VA T +I  Y     +  AR +F++ P   R+ V + AM++ Y+ N 
Sbjct: 167 ARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMP--KRNVVTWTAMVSGYARNG 224

Query: 129 NGHAAIELFRDM-RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSV 187
               A +LF  M  R++V     ++T++L                H   ++  + LF + 
Sbjct: 225 KVDVARKLFEVMPERNEV-----SWTAMLLGYT------------HSGRMREASSLFDA- 266

Query: 188 LNALISVYVKCVSSPFVSSRSLMG---AARRVFDEMPERDELSWTTMMTGYVKNDY-LDA 243
               + V    V +  +    L G    ARRVF  M ERD  +W+ M+  Y +  Y L+A
Sbjct: 267 ----MPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEA 322

Query: 244 AREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ 303
              F     E + + + +LI                       SV+S C +      GKQ
Sbjct: 323 LGLFRRMQREGLALNFPSLI-----------------------SVLSVCVSLASLDHGKQ 359

Query: 304 VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV 363
           VHA L+R+E     +  L V + L+T+Y KCG +  A+ +FN+ P +D+V WN++++ Y 
Sbjct: 360 VHAQLVRSEF----DQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGY- 414

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
                                         +Q+G GEE L +F  M   G  P D  F G
Sbjct: 415 ------------------------------SQHGLGEEALNVFHDMCSSGVPPDDVTFIG 444

Query: 424 AITSCAGLGALENGRQLHAQL-VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-N 481
            +++C+  G ++ G +L   +      +  +     L+ +  R   V  A  +   MP  
Sbjct: 445 VLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPME 504

Query: 482 VDSVSWNAMIAALGQH 497
            D++ W A++ A   H
Sbjct: 505 PDAIVWGALLGACRTH 520



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 141/276 (51%), Gaps = 21/276 (7%)

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
           + +ML+++L   T +S   AC      R G+  HA  +  E  P P  ++   NA+V  Y
Sbjct: 11  RCMMLQVRLQCTTSSSYAIAC----YARNGQLDHARKVFDET-PLPHRTVSSWNAMVAAY 65

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
           ++  +  EA  +F +MP+R+ VSWN ++S ++  G++ EA+ +F+ M +RN++SWT M+ 
Sbjct: 66  FEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVR 125

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
           G  +NG   E  +LF  M  +          G +      G +++ R+L   +     + 
Sbjct: 126 GYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQE----GRVDDARKLFDMMP----EK 177

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
            + A   +I  Y   G ++ A  +F+ MP  + V+W AM++   ++G    A +L+E   
Sbjct: 178 DVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFE--- 234

Query: 512 KEGILPDR--ITFLTVLSACNHAGLVKEGRRYFETM 545
              ++P+R  +++  +L    H+G ++E    F+ M
Sbjct: 235 ---VMPERNEVSWTAMLLGYTHSGRMREASSLFDAM 267



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 23/195 (11%)

Query: 65  KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
           K V+A+ +  E  Q D+   + LI  Y    N+  A+++FN+ PLK  D V +N+MIT Y
Sbjct: 358 KQVHAQLVRSEFDQ-DLYVASVLITMYVKCGNLVRAKQVFNRFPLK--DVVMWNSMITGY 414

Query: 125 SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLF 184
           S +  G  A+ +F DM    V PD+ TF  VLSA +            +   VK G  LF
Sbjct: 415 SQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACS------------YSGKVKEGLELF 462

Query: 185 TSV-----LNALISVYVKCVSSPFVSSRSLMGAARRVFDEMP-ERDELSWTTMMTGYVKN 238
            ++     +   I  Y   V    +     +  A ++ ++MP E D + W  ++     +
Sbjct: 463 ETMKCKYQVEPGIEHYACLVD--LLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTH 520

Query: 239 DYLDAAREFLDGMSE 253
             LD A   ++ +++
Sbjct: 521 MKLDLAEVAVEKLAQ 535


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 285/775 (36%), Positives = 421/775 (54%), Gaps = 93/775 (12%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP----QPDIVARTT 86
           S  A  V   M+ SG +P E   + +++    S  L   R +   +     + D+     
Sbjct: 186 SGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANA 245

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           L+  YS   ++++A  +F K P    D V +NA I+    + + H A+EL   M+   + 
Sbjct: 246 LVDMYSKLGDIEMAATVFEKMPAA--DVVSWNAFISGCVTHGHDHRALELLLQMKSSGLV 303

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           P+ FT +SVL A A                   G G F ++   +    VK V+      
Sbjct: 304 PNVFTLSSVLKACA-------------------GAGAF-NLGRQIHGFMVKAVA------ 337

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
                          + DE     ++  Y K+ +LD AR+  D M     + WNALISG 
Sbjct: 338 ---------------DFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGC 382

Query: 267 VH-----------RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
            H             ++   L + ++  T  SV+ + A+S      +QVHA   +     
Sbjct: 383 SHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLS 442

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
                  V N L+  YWKCG+                               +D A  +F
Sbjct: 443 DSH----VINGLIDSYWKCGQ-------------------------------LDYAIKVF 467

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
           +  R  +++S T M++ L+Q  +GE+ +KLF QM  +G +P  +  +  + +C  L A E
Sbjct: 468 KESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYE 527

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            G+Q+HA L+   + S + AGNAL+  YA+CG +E A+  F+ +P    VSW+AMI  L 
Sbjct: 528 QGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLA 587

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
           QHG+G RA++L+ +ML EG+ P+ IT  +VLSACNHAGLV + ++YFE+M   +GI   E
Sbjct: 588 QHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTE 647

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
           +HYA  ID+L RAGK  +A ++++++PF+ +A +W ALL   R+H + +LG  AAE+LF 
Sbjct: 648 EHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFT 707

Query: 616 LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
           L P  +GT+VLL+N YA+ G WD+ A+VRKLM+D  VKKEP  SW+E+ +KVH F+V D 
Sbjct: 708 LEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGDK 767

Query: 676 AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKL 735
           +HP  + +Y  L +L   M K GYVP+ +  LHD++  +KE  LS HSE+LAVAF L+  
Sbjct: 768 SHPMTRDIYGKLAELGDLMNKAGYVPNVEVDLHDVDRSEKELLLSHHSERLAVAFALIST 827

Query: 736 PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           P GA +RV KNLRIC DCH AFK++SK+V REI++RD  RFHHF +G CSCGDYW
Sbjct: 828 PSGAPIRVKKNLRICRDCHVAFKYISKIVSREIIIRDINRFHHFTNGTCSCGDYW 882



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 132/438 (30%), Positives = 204/438 (46%), Gaps = 83/438 (18%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
            +H  ++KSG  L     N L+++Y +C          L  AAR VFDE+P+   +SW++
Sbjct: 25  HLHSHLLKSG--LLAGFSNHLLTLYSRC---------RLPSAARAVFDEIPDPCHVSWSS 73

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++T Y  N           GM  +  +A+ A           M    +  +EF    V+ 
Sbjct: 74  LVTAYSNN-----------GMPRDALLAFRA-----------MRGRGVPCNEFALPVVLK 111

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM--- 347
            CA     R G QVHA  + T         + V NALV +Y   G V+EAR +F++    
Sbjct: 112 -CAPD--VRFGAQVHALAVATRLV----HDVFVANALVAVYGGFGMVDEARRMFDEYVGV 164

Query: 348 -PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
             ER+ VSWN ++SAYV                               +N    + + +F
Sbjct: 165 GGERNAVSWNTMISAYV-------------------------------KNDQSGDAIGVF 193

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
            +M   G +P ++ F+  + +C G   LE GRQ+H  +V +GY+  +   NAL+ MY++ 
Sbjct: 194 REMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKL 253

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G +E A  VF  MP  D VSWNA I+    HG+  RA+EL  QM   G++P+  T  +VL
Sbjct: 254 GDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVL 313

Query: 527 SACNHAGLVKEGRRYFETMHG--PYGIPPGEDHYA-RFIDLLCRAGKFSEAKDVIDSLPF 583
            AC  AG    GR+    +HG     +   ++  A   +D+  + G   +A+ V D +P 
Sbjct: 314 KACAGAGAFNLGRQ----IHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMP- 368

Query: 584 KPSAPIWEALLAGCRIHG 601
           +    +W AL++GC   G
Sbjct: 369 RRDLILWNALISGCSHDG 386



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 137/498 (27%), Positives = 210/498 (42%), Gaps = 111/498 (22%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           +H+H++ SG        N L+ +Y +      AR +FDEIP P  V+             
Sbjct: 26  LHSHLLKSGLLAG--FSNHLLTLYSRCRLPSAARAVFDEIPDPCHVS------------- 70

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
                               +++++TAYS+N     A+  FR MR   V  + F    VL
Sbjct: 71  --------------------WSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVL 110

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
                   + +   Q+H   V +       V NAL++VY             ++  ARR+
Sbjct: 111 KC----APDVRFGAQVHALAVATRLVHDVFVANALVAVY---------GGFGMVDEARRM 157

Query: 217 FDEM----PERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           FDE      ER+ +SW TM++ YVKND             + +GV    + SG       
Sbjct: 158 FDEYVGVGGERNAVSWNTMISAYVKNDQ----------SGDAIGVFREMVWSGE------ 201

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                 + +EF ++ V++AC  S     G+QVH  ++RT      E  +   NALV +Y 
Sbjct: 202 ------RPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRT----GYEKDVFTANALVDMYS 251

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           K G +  A  +F +MP  D+VSWNA                                ISG
Sbjct: 252 KLGDIEMAATVFEKMPAADVVSWNAF-------------------------------ISG 280

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
              +G+    L+L  QM+  G  P  +  +  + +CAG GA   GRQ+H  +V +  D  
Sbjct: 281 CVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFD 340

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
                 L+ MYA+ G ++ A  VF+ MP  D + WNA+I+     G     + L+ +M K
Sbjct: 341 EFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRK 400

Query: 513 EGILPD--RITFLTVLSA 528
           EG+  D  R T  +VL +
Sbjct: 401 EGLDLDVNRTTLASVLKS 418



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 150/343 (43%), Gaps = 58/343 (16%)

Query: 284 TYTSVISACANSGLFR---LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
           T  ++ SA A  G  R    G  +H++LL++            +N L+TLY +C   + A
Sbjct: 3   TPETIGSALARFGTSRSLFAGAHLHSHLLKSG------LLAGFSNHLLTLYSRCRLPSAA 56

Query: 341 RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGE 400
           R +F+++P+   VSW+++++AY + G+  +A   F AMR R +                 
Sbjct: 57  RAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGV----------------- 99

Query: 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALI 460
                          PC+      +  CA    +  G Q+HA  V +     +   NAL+
Sbjct: 100 ---------------PCNEFALPVVLKCA--PDVRFGAQVHALAVATRLVHDVFVANALV 142

Query: 461 TMYARCGVVEAANCVFNTMPNV----DSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
            +Y   G+V+ A  +F+    V    ++VSWN MI+A  ++     AI ++ +M+  G  
Sbjct: 143 AVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGER 202

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPY---GIPPGEDHYARFIDLLCRAGKFSE 573
           P+   F  V++AC  +  ++ GR+    +HG     G           +D+  + G    
Sbjct: 203 PNEFGFSCVVNACTGSRDLEAGRQ----VHGAVVRTGYEKDVFTANALVDMYSKLGDIEM 258

Query: 574 AKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           A  V + +P       W A ++GC  HG+     +A E L Q+
Sbjct: 259 AATVFEKMP-AADVVSWNAFISGCVTHGHDH---RALELLLQM 297


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 290/786 (36%), Positives = 426/786 (54%), Gaps = 117/786 (14%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+     L+A Y     +  AR +FN+   + R+ V +N +++AY  N     AI++F +
Sbjct: 134 DVFVANALVAMYGGFGFMDDARRVFNEADSE-RNAVSWNGLMSAYVKNDQCGDAIQVFGE 192

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M    ++P  F F+ V++A       E    Q+H  VV+ G        NAL+ +Y+K  
Sbjct: 193 MVWSGIQPTEFGFSCVVNACTGSRNIEAG-RQVHAMVVRMGYDKDVFTANALVDMYMK-- 249

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                     +  A  +F++MP+ D                                V+W
Sbjct: 250 -------MGRVDIASVIFEKMPDSDV-------------------------------VSW 271

Query: 260 NALISGYV-----HRELKMLMLR----IQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
           NALISG V     HR +++L+      +  + FT +S++ AC+ +G F LG+Q+H ++++
Sbjct: 272 NALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIK 331

Query: 311 TEAKPTPEFS---------------------------LPVNNALVTLYWKCGKVNEARDI 343
             A                                  L + NAL++     G+ +EA  +
Sbjct: 332 ANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSL 391

Query: 344 FNQMPERDL------------------------------VSWNAILSAYVSAGLID---- 369
           F ++ +  L                              V    I  A+V  GLID    
Sbjct: 392 FYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWK 451

Query: 370 -----EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
                +A  +FE     ++++ T MI+ L+Q  +GE  +KLF +M  +G +P  +  +  
Sbjct: 452 CSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSL 511

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           + +CA L A E G+Q+HA L+   + S   AGNAL+  YA+CG +E A   F+++P    
Sbjct: 512 LNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGV 571

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
           VSW+AMI  L QHG+G RA+EL+ +M+ EGI P+ IT  +VL ACNHAGLV E +RYF +
Sbjct: 572 VSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNS 631

Query: 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
           M   +GI   E+HY+  IDLL RAGK  +A ++++S+PF+ +A IW ALL   R+H + +
Sbjct: 632 MKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPE 691

Query: 605 LGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVD 664
           LG  AAE+LF L P  +GT+VLL+N YA+ G W++ A+VRKLM+D  +KKEP  SWIEV 
Sbjct: 692 LGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVK 751

Query: 665 NKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSE 724
           +KVH F+V D +HP  + +Y  L +L   M K G+VP+    LHD++  +KE  LS HSE
Sbjct: 752 DKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKELLLSHHSE 811

Query: 725 KLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKC 784
           +LAVAF L+  P GA +RV KNLRIC DCH AFKF+SK+V REI++RD  RFHHFRDG C
Sbjct: 812 RLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTC 871

Query: 785 SCGDYW 790
           SCGDYW
Sbjct: 872 SCGDYW 877



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 130/446 (29%), Positives = 203/446 (45%), Gaps = 73/446 (16%)

Query: 84  RTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD 143
           R  LI+ YS       AR  F++ P      V +++++TAYS+N    +AI+ F  MR +
Sbjct: 40  RNHLISFYSKCRRPCCARRFFDEIPDPCH--VSWSSLVTAYSNNGLPRSAIQAFHGMRAE 97

Query: 144 DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
            V  + F    VL      V + +   Q+H   + +G G    V NAL+++Y        
Sbjct: 98  GVCCNEFALPVVLKC----VPDARLGAQVHAMAMATGFGSDVFVANALVAMY-------- 145

Query: 204 VSSRSLMGAARRVFDEM-PERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL 262
                 M  ARRVF+E   ER+ +SW  +M+ YVKND    A +    M       W+  
Sbjct: 146 -GGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM------VWSG- 197

Query: 263 ISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
                          IQ  EF ++ V++AC  S     G+QVHA ++R          + 
Sbjct: 198 ---------------IQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDK----DVF 238

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
             NALV +Y K G+V+ A  IF +MP+ D+VSWNA                         
Sbjct: 239 TANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNA------------------------- 273

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
                 +ISG   NG+    ++L  QM+  G  P  +  +  + +C+G GA + GRQ+H 
Sbjct: 274 ------LISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHG 327

Query: 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
            ++ +  DS    G  L+ MYA+   ++ A  VF+ M + D +  NA+I+     G    
Sbjct: 328 FMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDE 387

Query: 503 AIELYEQMLKEGILPDRITFLTVLSA 528
           A+ L+ ++ KEG+  +R T   VL +
Sbjct: 388 ALSLFYELRKEGLGVNRTTLAAVLKS 413



 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 131/439 (29%), Positives = 203/439 (46%), Gaps = 82/439 (18%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
            +H +++KSG+    S  N LIS Y KC              ARR FDE+P+   +SW++
Sbjct: 25  HLHASLLKSGS--LASFRNHLISFYSKCRRPC---------CARRFFDEIPDPCHVSWSS 73

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++T Y  N    +A +   GM    GV  N                     EF    V+ 
Sbjct: 74  LVTAYSNNGLPRSAIQAFHGMRAE-GVCCN---------------------EFALPVVLK 111

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM-PE 349
              ++   RLG QVHA  + T         + V NALV +Y   G +++AR +FN+   E
Sbjct: 112 CVPDA---RLGAQVHAMAMATGFGS----DVFVANALVAMYGGFGFMDDARRVFNEADSE 164

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
           R+ VSWN ++SAYV                               +N    + +++F +M
Sbjct: 165 RNAVSWNGLMSAYV-------------------------------KNDQCGDAIQVFGEM 193

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
              G +P ++ F+  + +C G   +E GRQ+HA +V  GYD  +   NAL+ MY + G V
Sbjct: 194 VWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRV 253

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           + A+ +F  MP+ D VSWNA+I+    +G+  RAIEL  QM   G++P+  T  ++L AC
Sbjct: 254 DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKAC 313

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDH----YARFIDLLCRAGKFSEAKDVIDSLPFKP 585
           + AG    GR+    +HG + I    D         +D+  +     +A+ V D + F  
Sbjct: 314 SGAGAFDLGRQ----IHG-FMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM-FHR 367

Query: 586 SAPIWEALLAGCRIHGNID 604
              +  AL++GC   G  D
Sbjct: 368 DLILCNALISGCSHGGRHD 386



 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 140/314 (44%), Gaps = 43/314 (13%)

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           G  +HA LL++ +  +        N L++ Y KC +   AR  F+++P+   VSW+++++
Sbjct: 23  GAHLHASLLKSGSLAS------FRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVT 76

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
           AY                               + NG     ++ F  MR EG    ++A
Sbjct: 77  AY-------------------------------SNNGLPRSAIQAFHGMRAEGVCCNEFA 105

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
               +  C     L  G Q+HA  + +G+ S +   NAL+ MY   G ++ A  VFN   
Sbjct: 106 LP-VVLKCVPDARL--GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEAD 162

Query: 481 NV-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
           +  ++VSWN +++A  ++     AI+++ +M+  GI P    F  V++AC  +  ++ GR
Sbjct: 163 SERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGR 222

Query: 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI 599
           +    M    G           +D+  + G+   A  + + +P       W AL++GC +
Sbjct: 223 Q-VHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMP-DSDVVSWNALISGCVL 280

Query: 600 HGNIDLGIQAAEQL 613
           +G+    I+   Q+
Sbjct: 281 NGHDHRAIELLLQM 294



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 138/333 (41%), Gaps = 69/333 (20%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
            +S  R VHA  +  GF    H++N LID Y K   L  A  +F+E    DI+A T++I 
Sbjct: 419 AASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMIT 478

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
           A S  D                                 +G  AI+LF +M R  ++PD 
Sbjct: 479 ALSQCD---------------------------------HGEGAIKLFMEMLRKGLEPDP 505

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           F  +S+L+A A +   E Q  Q+H  ++K          NAL+  Y KC S         
Sbjct: 506 FVLSSLLNACASLSAYE-QGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGS--------- 555

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +  A   F  +PER  +SW+ M+ G  ++ +   A E                       
Sbjct: 556 IEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFG-------------------- 595

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
             +M+   I  +  T TSV+ AC ++GL    K+   Y    +     + +    + ++ 
Sbjct: 596 --RMVDEGINPNHITMTSVLCACNHAGLVDEAKR---YFNSMKEMFGIDRTEEHYSCMID 650

Query: 330 LYWKCGKVNEARDIFNQMPERDLVS-WNAILSA 361
           L  + GK+++A ++ N MP +   S W A+L A
Sbjct: 651 LLGRAGKLDDAMELVNSMPFQANASIWGALLGA 683



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 2/102 (1%)

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           +T  A   AL  G  LHA L+ SG  +S    N LI+ Y++C     A   F+ +P+   
Sbjct: 11  LTRYAAAQALLPGAHLHASLLKSGSLASFR--NHLISFYSKCRRPCCARRFFDEIPDPCH 68

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           VSW++++ A   +G    AI+ +  M  EG+  +      VL
Sbjct: 69  VSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVL 110


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 269/709 (37%), Positives = 408/709 (57%), Gaps = 43/709 (6%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMR-RDDV 145
            I  YS S +++ AR +F+K P    D   +  +I+A + +     AI+ + D R ++ V
Sbjct: 17  FIKVYSNSGDLQRARHLFDKIP--QPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCV 74

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVS 205
           +PD     SV  A A +  +     ++H   ++ G      + NALI +Y KC  S    
Sbjct: 75  EPDKLLLLSVAKACASL-RDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSE--- 130

Query: 206 SRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265
                  AR VF+ MP RD +SWT+M + YV    L   RE L                 
Sbjct: 131 ------GARLVFEGMPFRDVISWTSMASCYVNCGLL---REALGAFR------------- 168

Query: 266 YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
                 KM +   + +  T +S++ AC +    + G++VH +++R         ++ V++
Sbjct: 169 ------KMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGG----NVFVSS 218

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER---- 381
           ALV +Y  C  + +A+ +F+ M  RD VSWN +++AY      ++  S+F  M       
Sbjct: 219 ALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGL 278

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
           N  SW  +I G  QNG  E+ L++ S+M+  GFKP        + +C  L +L  G+Q+H
Sbjct: 279 NYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIH 338

Query: 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGA 501
             +    +   L+   AL+ MYA+CG +E +  VF+ M   D+VSWN MI A   HGNG 
Sbjct: 339 GYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGE 398

Query: 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF 561
            A+ L+ +M+  G+ P+ +TF  VLS C+H+ LV EG   F++M   + + P  DH++  
Sbjct: 399 EALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCM 458

Query: 562 IDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621
           +D+L RAG+  EA + I  +P +P+A  W ALL GCR++ N++LG  AA +LF++   + 
Sbjct: 459 VDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIESDNP 518

Query: 622 GTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQ 681
           G YVLLSN+  +   W +A+  RKLMRDRGV K PGCSWI+V N+VH F+V D ++ ++ 
Sbjct: 519 GNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQVRNRVHTFVVGDKSNDQSD 578

Query: 682 AVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATV 741
            +Y++L+ +  +MR  GY+P+T FVL D++ ++KE  L  HSEKLAVAFG++ L G +++
Sbjct: 579 EIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQEEKEEVLCNHSEKLAVAFGVLNLNGESSI 638

Query: 742 RVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           RV KNLRICGDCHNA KFM+K+VG +I+VRD  RFHHFRDG CSC D+W
Sbjct: 639 RVFKNLRICGDCHNAIKFMAKIVGVKIIVRDSLRFHHFRDGLCSCQDFW 687



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 120/393 (30%), Positives = 185/393 (47%), Gaps = 64/393 (16%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           A+ VH   I  GF     + N LID+Y K      AR +F+ +P  D+++ T++ + Y  
Sbjct: 97  AKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYV- 155

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
             N  L RE                              A+  FR M  +  +P++ T +
Sbjct: 156 --NCGLLRE------------------------------ALGAFRKMGLNGERPNSVTVS 183

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           S+L A   + ++ K   ++H  VV++G G    V +AL+++Y  C+S         +  A
Sbjct: 184 SILPACTDL-KDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLS---------IRQA 233

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAARE-FLDGMSENVGV---AWNALISGYVH- 268
           + VFD M  RD +SW  ++T Y  N   +     F   MSE VG+   +WNA+I G +  
Sbjct: 234 QLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQN 293

Query: 269 -RELKML--MLRIQLDEF-----TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
            R  K L  + R+Q   F     T TSV+ AC N    R GKQ+H Y+ R          
Sbjct: 294 GRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQ----D 349

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           L    ALV +Y KCG +  +R +F+ M +RD VSWN ++ A    G  +EA  LF  M +
Sbjct: 350 LTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVD 409

Query: 381 R----NLLSWTVMISGLAQNGYGEEGLKLFSQM 409
                N +++T ++SG + +   +EGL +F  M
Sbjct: 410 SGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSM 442


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 290/786 (36%), Positives = 426/786 (54%), Gaps = 117/786 (14%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+     L+A Y     +  AR +FN+   + R+ V +N +++AY  N     AI++F +
Sbjct: 134 DVFVANALVAMYGGFGFMDDARRVFNEADSE-RNAVSWNGLMSAYVKNDQCGDAIQVFGE 192

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M    ++P  F F+ V++A       E    Q+H  VV+ G        NAL+ +Y+K  
Sbjct: 193 MVWSGIQPTEFGFSCVVNACTGSRNIEAG-RQVHAMVVRMGYDKDVFTANALVDMYMK-- 249

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                     +  A  +F++MP+ D                                V+W
Sbjct: 250 -------MGRVDIASVIFEKMPDSDV-------------------------------VSW 271

Query: 260 NALISGYV-----HRELKMLMLR----IQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
           NALISG V     HR +++L+      +  + FT +S++ AC+ +G F LG+Q+H ++++
Sbjct: 272 NALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIK 331

Query: 311 TEAKPTPEFS---------------------------LPVNNALVTLYWKCGKVNEARDI 343
             A                                  L + NAL++     G+ +EA  +
Sbjct: 332 ANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSL 391

Query: 344 FNQMPERDL------------------------------VSWNAILSAYVSAGLID---- 369
           F ++ +  L                              V    I  A+V  GLID    
Sbjct: 392 FYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWK 451

Query: 370 -----EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
                +A  +FE     ++++ T MI+ L+Q  +GE  +KLF +M  +G +P  +  +  
Sbjct: 452 CSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSL 511

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           + +CA L A E G+Q+HA L+   + S   AGNAL+  YA+CG +E A   F+++P    
Sbjct: 512 LNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGV 571

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
           VSW+AMI  L QHG+G RA+EL+ +M+ EGI P+ IT  +VL ACNHAGLV E +RYF +
Sbjct: 572 VSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNS 631

Query: 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
           M   +GI   E+HY+  IDLL RAGK  +A ++++S+PF+ +A IW ALL   R+H + +
Sbjct: 632 MKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPE 691

Query: 605 LGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVD 664
           LG  AAE+LF L P  +GT+VLL+N YA+ G W++ A+VRKLM+D  +KKEP  SWIEV 
Sbjct: 692 LGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVK 751

Query: 665 NKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSE 724
           +KVH F+V D +HP  + +Y  L +L   M K G+VP+    LHD++  +KE  LS HSE
Sbjct: 752 DKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKELLLSHHSE 811

Query: 725 KLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKC 784
           +LAVAF L+  P GA +RV KNLRIC DCH AFKF+SK+V REI++RD  RFHHFRDG C
Sbjct: 812 RLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTC 871

Query: 785 SCGDYW 790
           SCGDYW
Sbjct: 872 SCGDYW 877



 Score =  178 bits (452), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 146/527 (27%), Positives = 224/527 (42%), Gaps = 115/527 (21%)

Query: 3   MKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCK 62
           M++A  I     RYA+   L    +         +HA ++ SG        N LI  Y K
Sbjct: 1   MRSAGTISQQLTRYAAAQALLPGAH---------LHASLLKSG--SLASFRNHLISFYSK 49

Query: 63  SLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
             +   AR +FDEIP P  V+ ++L                                 +T
Sbjct: 50  CRRPCCARRVFDEIPDPCHVSWSSL---------------------------------VT 76

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTG 182
           AYS+N    +AI+ F  MR + V  + F    VL      V + +   Q+H   + +G G
Sbjct: 77  AYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC----VPDARLGAQVHAMAMATGFG 132

Query: 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEM-PERDELSWTTMMTGYVKNDYL 241
               V NAL+++Y              M  ARRVF+E   ER+ +SW  +M+ YVKND  
Sbjct: 133 SDVFVANALVAMY---------GGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQC 183

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
             A +    M       W+                 IQ  EF ++ V++AC  S     G
Sbjct: 184 GDAIQVFGEM------VWSG----------------IQPTEFGFSCVVNACTGSRNIEAG 221

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
           +QVHA ++R          +   NALV +Y K G+V+ A  IF +MP+ D+VSWNA    
Sbjct: 222 RQVHAMVVRMGYDK----DVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNA---- 273

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
                                      +ISG   NG+    ++L  QM+  G  P  +  
Sbjct: 274 ---------------------------LISGCVLNGHDHRAIELLLQMKYSGLVPNVFTL 306

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
           +  + +C+G GA + GRQ+H  ++ +  DS    G  L+ MYA+   ++ A  VF+ M +
Sbjct: 307 SSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFH 366

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
            D +  NA+I+     G    A+ L+ ++ KEG+  +R T   VL +
Sbjct: 367 RDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKS 413



 Score =  177 bits (450), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 132/439 (30%), Positives = 204/439 (46%), Gaps = 82/439 (18%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
            +H +++KSG+    S  N LIS Y KC              ARRVFDE+P+   +SW++
Sbjct: 25  HLHASLLKSGS--LASFRNHLISFYSKCRRPC---------CARRVFDEIPDPCHVSWSS 73

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++T Y  N    +A +   GM    GV  N                     EF    V+ 
Sbjct: 74  LVTAYSNNGLPRSAIQAFHGMRAE-GVCCN---------------------EFALPVVLK 111

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM-PE 349
              ++   RLG QVHA  + T         + V NALV +Y   G +++AR +FN+   E
Sbjct: 112 CVPDA---RLGAQVHAMAMATGFGS----DVFVANALVAMYGGFGFMDDARRVFNEADSE 164

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
           R+ VSWN ++SAYV                               +N    + +++F +M
Sbjct: 165 RNAVSWNGLMSAYV-------------------------------KNDQCGDAIQVFGEM 193

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
              G +P ++ F+  + +C G   +E GRQ+HA +V  GYD  +   NAL+ MY + G V
Sbjct: 194 VWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRV 253

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           + A+ +F  MP+ D VSWNA+I+    +G+  RAIEL  QM   G++P+  T  ++L AC
Sbjct: 254 DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKAC 313

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDH----YARFIDLLCRAGKFSEAKDVIDSLPFKP 585
           + AG    GR+    +HG + I    D         +D+  +     +A+ V D + F  
Sbjct: 314 SGAGAFDLGRQ----IHG-FMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM-FHR 367

Query: 586 SAPIWEALLAGCRIHGNID 604
              +  AL++GC   G  D
Sbjct: 368 DLILCNALISGCSHGGRHD 386



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 141/314 (44%), Gaps = 43/314 (13%)

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           G  +HA LL++ +  +        N L++ Y KC +   AR +F+++P+   VSW+++++
Sbjct: 23  GAHLHASLLKSGSLAS------FRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVT 76

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
           AY                               + NG     ++ F  MR EG    ++A
Sbjct: 77  AY-------------------------------SNNGLPRSAIQAFHGMRAEGVCCNEFA 105

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
               +  C     L  G Q+HA  + +G+ S +   NAL+ MY   G ++ A  VFN   
Sbjct: 106 LP-VVLKCVPDARL--GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEAD 162

Query: 481 NV-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
           +  ++VSWN +++A  ++     AI+++ +M+  GI P    F  V++AC  +  ++ GR
Sbjct: 163 SERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGR 222

Query: 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI 599
           +    M    G           +D+  + G+   A  + + +P       W AL++GC +
Sbjct: 223 Q-VHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMP-DSDVVSWNALISGCVL 280

Query: 600 HGNIDLGIQAAEQL 613
           +G+    I+   Q+
Sbjct: 281 NGHDHRAIELLLQM 294



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 138/333 (41%), Gaps = 69/333 (20%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
            +S  R VHA  +  GF    H++N LID Y K   L  A  +F+E    DI+A T++I 
Sbjct: 419 AASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMIT 478

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
           A S  D                                 +G  AI+LF +M R  ++PD 
Sbjct: 479 ALSQCD---------------------------------HGEGAIKLFMEMLRKGLEPDP 505

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           F  +S+L+A A +   E Q  Q+H  ++K          NAL+  Y KC S         
Sbjct: 506 FVLSSLLNACASLSAYE-QGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGS--------- 555

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +  A   F  +PER  +SW+ M+ G  ++ +   A E                       
Sbjct: 556 IEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFG-------------------- 595

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
             +M+   I  +  T TSV+ AC ++GL    K+   Y    +     + +    + ++ 
Sbjct: 596 --RMVDEGINPNHITMTSVLCACNHAGLVDEAKR---YFNSMKEMFGIDRTEEHYSCMID 650

Query: 330 LYWKCGKVNEARDIFNQMPERDLVS-WNAILSA 361
           L  + GK+++A ++ N MP +   S W A+L A
Sbjct: 651 LLGRAGKLDDAMELVNSMPFQANASIWGALLGA 683


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 283/780 (36%), Positives = 426/780 (54%), Gaps = 90/780 (11%)

Query: 36  SVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASD 95
           + H  +  +GF+    I N L+ +Y +   L  A  +FDEI Q  I              
Sbjct: 138 AFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGI-------------- 183

Query: 96  NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM------RRDDVKPDN 149
                            D + +N++++A+  +SN   A++LF  M      +  + + D 
Sbjct: 184 ----------------DDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 227

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
            +  ++L A   + +   Q  ++H   +++GT L   V NALI  Y KC          L
Sbjct: 228 ISIVNILPACGSL-KAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKC---------GL 277

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM-SENVG---VAWNALISG 265
           M  A +VF+ M  +D +SW  M+ GY ++    AA E    M  EN+    V W A+I+G
Sbjct: 278 MENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAG 337

Query: 266 YVHRELKMLMLRI--QL-------DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
           Y  R      L +  Q+       +  T  SV+SACA+ G F  G ++HAY L+      
Sbjct: 338 YSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLK------ 391

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
                   N L+TL    G  +E           DL+ +NA++  Y        A+S+F+
Sbjct: 392 --------NCLLTLDNDFGGEDE-----------DLMVYNALIDMYSKCRSFKAARSIFD 432

Query: 377 --AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE--GFKPCDYAFAGAITSCAGLG 432
              + ERN+++WTVMI G AQ G   + LKLF +M  E  G  P  Y  +  + +CA L 
Sbjct: 433 DIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLA 492

Query: 433 ALENGRQLHAQLV-HSGYDSSLS-AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
           A+  G+Q+HA ++ H  YDSS     N LI MY++CG V+ A  VF++M    ++SW +M
Sbjct: 493 AIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSM 552

Query: 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
           +   G HG G+ A++++++M K G +PD ITFL VL AC+H G+V +G  YF++M   YG
Sbjct: 553 MTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYG 612

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
           + P  +HYA  IDLL R G+  +A   +  +P +P+A +W ALL+ CR+H N++L   A 
Sbjct: 613 LTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHAL 672

Query: 611 EQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVF 670
            +L ++   + G+Y L+SN+YA  GRW D AR+R LM+  G+KK PGCSW++       F
Sbjct: 673 NKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASF 732

Query: 671 LVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAF 730
            V D +HP +  +Y  LE L+  ++ +GYVP+T F LHD++ ++K   L  HSEKLA+A+
Sbjct: 733 FVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAY 792

Query: 731 GLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           GL+    G  +R+ KNLR+CGDCH+AF ++SK+V  EIVVRD  RFHHF++G CSCG YW
Sbjct: 793 GLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 852



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 146/508 (28%), Positives = 223/508 (43%), Gaps = 109/508 (21%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           + VH + I +G      + N LID Y K   +  A  +F+ +   D+V+   ++A YS S
Sbjct: 247 KEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQS 306

Query: 95  DNVKLAREMFN-----KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
            N K A E+F        PL   D V + A+I  YS     H A+ +FR M      P+ 
Sbjct: 307 GNFKAAFELFKNMRKENIPL---DMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNC 363

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKS----------GTGLFTSVLNALISVYVKCV 199
            T  SVLSA A +     Q M++H   +K+          G      V NALI +Y KC 
Sbjct: 364 VTIISVLSACASL-GAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 422

Query: 200 SSPFVSSRSLMGAARRVFDEMP--ERDELSWTTMMTGYVK-NDYLDAAREFLDGMSENVG 256
           S           AAR +FD++P  ER+ ++WT M+ G+ +  D  DA + F++ +SE  G
Sbjct: 423 S---------FKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYG 473

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
           VA NA                     +T + ++ ACA+    R+GKQ+HAY+LR     +
Sbjct: 474 VAPNA---------------------YTISCILMACAHLAAIRIGKQIHAYVLRHHQYDS 512

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
             +   V N L+ +Y KCG V+ AR +F+ M ++  +SW ++++ Y              
Sbjct: 513 SAYF--VANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGY-------------- 556

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
                              +G G E L +F +MR  GF P D  F   + +C+  G ++ 
Sbjct: 557 -----------------GMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQ 599

Query: 437 GRQLHAQLVHSGYDSSLSAGNAL----------ITMYARCGVVEAANCVFNTMP-NVDSV 485
           G           Y  S+SA   L          I + AR G ++ A      MP    +V
Sbjct: 600 GLS---------YFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAV 650

Query: 486 SWNAMIAALGQHGNGARAIELYEQMLKE 513
            W A+++A   H N    +EL E  L +
Sbjct: 651 VWVALLSACRVHSN----VELAEHALNK 674



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 115/469 (24%), Positives = 186/469 (39%), Gaps = 122/469 (26%)

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
           S PF+S RSL                   T ++  Y+     D A   L+ ++ +  V W
Sbjct: 44  SEPFISPRSLG------------------TGVVASYLACGATDYALLVLERVTPSPAVWW 85

Query: 260 NALISGYVHR---------ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
           N LI  ++ +           +ML    +LD FT   V+ AC     +R G   H  +  
Sbjct: 86  NLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICC 145

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
                  E ++ + NALV +Y +CG                                ++E
Sbjct: 146 NGF----ESNVFICNALVAMYSRCGS-------------------------------LEE 170

Query: 371 AKSLFEAMRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF-KPCD-----YAF 421
           A  +F+ + +R   +++SW  ++S   ++      L LFS+M L    KP +      + 
Sbjct: 171 ASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISI 230

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
              + +C  L A+   +++H   + +G    +  GNALI  YA+CG++E A  VFN M  
Sbjct: 231 VNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEF 290

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI-------------------------- 515
            D VSWNAM+A   Q GN   A EL++ M KE I                          
Sbjct: 291 KDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNV 350

Query: 516 ---------LPDRITFLTVLSACNHAGLVKEG--------RRYFETMHGPYGIPPGEDH- 557
                    LP+ +T ++VLSAC   G   +G        +    T+   +G   GED  
Sbjct: 351 FRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFG---GEDED 407

Query: 558 ---YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI-WEALLAGCRIHGN 602
              Y   ID+  +   F  A+ + D +P +    + W  ++ G   +G+
Sbjct: 408 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGD 456



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 127/275 (46%), Gaps = 23/275 (8%)

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
             ++++Y++ G  D A  + E +     + W ++I    + G  +  + +  +M   G +
Sbjct: 55  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 114

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
              +     + +C  L +   G   H  +  +G++S++   NAL+ MY+RCG +E A+ +
Sbjct: 115 LDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 174

Query: 476 FNTMPNV---DSVSWNAMIAALGQHGNGARAIELYEQM---LKEGILPDR---ITFLTVL 526
           F+ +      D +SWN++++A  +  N   A++L+ +M   + E    +R   I+ + +L
Sbjct: 175 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 234

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGE--DHYA--RFIDLLCRAGKFSEAKDVIDSLP 582
            AC     V + +     +HG   I  G   D +     ID   + G    A  V + + 
Sbjct: 235 PACGSLKAVPQTKE----VHGN-AIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMME 289

Query: 583 FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           FK     W A++AG    GN     +AA +LF+ M
Sbjct: 290 FKDVVS-WNAMVAGYSQSGN----FKAAFELFKNM 319


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 283/780 (36%), Positives = 426/780 (54%), Gaps = 90/780 (11%)

Query: 36  SVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASD 95
           + H  +  +GF+    I N L+ +Y +   L  A  +FDEI Q  I              
Sbjct: 31  AFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGI-------------- 76

Query: 96  NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM------RRDDVKPDN 149
                            D + +N++++A+  +SN   A++LF  M      +  + + D 
Sbjct: 77  ----------------DDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
            +  ++L A   + +   Q  ++H   +++GT L   V NALI  Y KC          L
Sbjct: 121 ISIVNILPACGSL-KAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKC---------GL 170

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM-SENVG---VAWNALISG 265
           M  A +VF+ M  +D +SW  M+ GY ++    AA E    M  EN+    V W A+I+G
Sbjct: 171 MENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAG 230

Query: 266 YVHRELKMLMLRI--QL-------DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
           Y  R      L +  Q+       +  T  SV+SACA+ G F  G ++HAY L+      
Sbjct: 231 YSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLK------ 284

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
                   N L+TL    G  +E           DL+ +NA++  Y        A+S+F+
Sbjct: 285 --------NCLLTLDNDFGGEDE-----------DLMVYNALIDMYSKCRSFKAARSIFD 325

Query: 377 --AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE--GFKPCDYAFAGAITSCAGLG 432
              + ERN+++WTVMI G AQ G   + LKLF +M  E  G  P  Y  +  + +CA L 
Sbjct: 326 DIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLA 385

Query: 433 ALENGRQLHAQLV-HSGYDSSLS-AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
           A+  G+Q+HA ++ H  YDSS     N LI MY++CG V+ A  VF++M    ++SW +M
Sbjct: 386 AIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSM 445

Query: 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
           +   G HG G+ A++++++M K G +PD ITFL VL AC+H G+V +G  YF++M   YG
Sbjct: 446 MTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYG 505

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
           + P  +HYA  IDLL R G+  +A   +  +P +P+A +W ALL+ CR+H N++L   A 
Sbjct: 506 LTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHAL 565

Query: 611 EQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVF 670
            +L ++   + G+Y L+SN+YA  GRW D AR+R LM+  G+KK PGCSW++       F
Sbjct: 566 NKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASF 625

Query: 671 LVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAF 730
            V D +HP +  +Y  LE L+  ++ +GYVP+T F LHD++ ++K   L  HSEKLA+A+
Sbjct: 626 FVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAY 685

Query: 731 GLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           GL+    G  +R+ KNLR+CGDCH+AF ++SK+V  EIVVRD  RFHHF++G CSCG YW
Sbjct: 686 GLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 745



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 146/508 (28%), Positives = 223/508 (43%), Gaps = 109/508 (21%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           + VH + I +G      + N LID Y K   +  A  +F+ +   D+V+   ++A YS S
Sbjct: 140 KEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQS 199

Query: 95  DNVKLAREMFN-----KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
            N K A E+F        PL   D V + A+I  YS     H A+ +FR M      P+ 
Sbjct: 200 GNFKAAFELFKNMRKENIPL---DMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNC 256

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKS----------GTGLFTSVLNALISVYVKCV 199
            T  SVLSA A +     Q M++H   +K+          G      V NALI +Y KC 
Sbjct: 257 VTIISVLSACASL-GAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 315

Query: 200 SSPFVSSRSLMGAARRVFDEMP--ERDELSWTTMMTGYVK-NDYLDAAREFLDGMSENVG 256
           S           AAR +FD++P  ER+ ++WT M+ G+ +  D  DA + F++ +SE  G
Sbjct: 316 S---------FKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYG 366

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
           VA NA                     +T + ++ ACA+    R+GKQ+HAY+LR     +
Sbjct: 367 VAPNA---------------------YTISCILMACAHLAAIRIGKQIHAYVLRHHQYDS 405

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
             +   V N L+ +Y KCG V+ AR +F+ M ++  +SW ++++ Y              
Sbjct: 406 SAYF--VANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGY-------------- 449

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
                              +G G E L +F +MR  GF P D  F   + +C+  G ++ 
Sbjct: 450 -----------------GMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQ 492

Query: 437 GRQLHAQLVHSGYDSSLSAGNAL----------ITMYARCGVVEAANCVFNTMP-NVDSV 485
           G           Y  S+SA   L          I + AR G ++ A      MP    +V
Sbjct: 493 GLS---------YFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAV 543

Query: 486 SWNAMIAALGQHGNGARAIELYEQMLKE 513
            W A+++A   H N    +EL E  L +
Sbjct: 544 VWVALLSACRVHSN----VELAEHALNK 567



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 165/387 (42%), Gaps = 95/387 (24%)

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           ML    +LD FT   V+ AC     +R G   H  +         E ++ + NALV +Y 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGF----ESNVFICNALVAMYS 56

Query: 333 KCGKVNEARDIFNQMPER---DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           +CG + EA  IF+++ +R   D++SWN+I+SA+V                 ++  +WT  
Sbjct: 57  RCGSLEEASMIFDEITQRGIDDVISWNSIVSAHV-----------------KSSNAWT-- 97

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGF-KPCD-----YAFAGAITSCAGLGALENGRQLHAQ 443
                        L LFS+M L    KP +      +    + +C  L A+   +++H  
Sbjct: 98  ------------ALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGN 145

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
            + +G    +  GNALI  YA+CG++E A  VFN M   D VSWNAM+A   Q GN   A
Sbjct: 146 AIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAA 205

Query: 504 IELYEQMLKEGI-----------------------------------LPDRITFLTVLSA 528
            EL++ M KE I                                   LP+ +T ++VLSA
Sbjct: 206 FELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSA 265

Query: 529 CNHAGLVKEG--------RRYFETMHGPYGIPPGEDH----YARFIDLLCRAGKFSEAKD 576
           C   G   +G        +    T+   +G   GED     Y   ID+  +   F  A+ 
Sbjct: 266 CASLGAFSQGMEIHAYSLKNCLLTLDNDFG---GEDEDLMVYNALIDMYSKCRSFKAARS 322

Query: 577 VIDSLPFKPSAPI-WEALLAGCRIHGN 602
           + D +P +    + W  ++ G   +G+
Sbjct: 323 IFDDIPLEERNVVTWTVMIGGHAQYGD 349



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 23/206 (11%)

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV-- 482
           + +C  L +   G   H  +  +G++S++   NAL+ MY+RCG +E A+ +F+ +     
Sbjct: 17  LKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGI 76

Query: 483 -DSVSWNAMIAALGQHGNGARAIELYEQM---LKEGILPDR---ITFLTVLSACNHAGLV 535
            D +SWN++++A  +  N   A++L+ +M   + E    +R   I+ + +L AC     V
Sbjct: 77  DDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAV 136

Query: 536 KEGRRYFETMHGPYGIPPGE--DHYA--RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
            + +     +HG   I  G   D +     ID   + G    A  V + + FK     W 
Sbjct: 137 PQTKE----VHGN-AIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVS-WN 190

Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQLM 617
           A++AG    GN     +AA +LF+ M
Sbjct: 191 AMVAGYSQSGN----FKAAFELFKNM 212


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 260/636 (40%), Positives = 375/636 (58%), Gaps = 58/636 (9%)

Query: 167 KQCMQMHCTVVKSG--TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERD 224
           +Q  ++H  +  SG   GLF  +LN L+ +Y KC         SLM + +++FDEMPERD
Sbjct: 87  QQGKKVHQHIKLSGFVPGLF--ILNRLLEMYAKC--------DSLMDS-QKLFDEMPERD 135

Query: 225 ELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR-------ELKMLMLR 277
             SW  +++GY K   L  A+   D M E    +W A+ISGYV         EL  +M R
Sbjct: 136 LCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKR 195

Query: 278 I---QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
               + ++FT +S ++A A     R+GK++H Y++RT                       
Sbjct: 196 SDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGL--------------------- 234

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
                         + D V W+A+   Y   G I+EA+ +F+ M +R++++WT MI    
Sbjct: 235 --------------DSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYF 280

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
           Q+G  +EG  LF+ +   G +P ++ F+G + +CA   + E G+++H  +   G+D    
Sbjct: 281 QDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSF 340

Query: 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
           A +AL+ MY++CG + +A  VF   P  D  SW ++IA   Q+G    AI  +E ++K G
Sbjct: 341 AASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSG 400

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
             PD ITF+ VLSAC HAGLV +G  YF ++   YG+    DHYA  IDLL R+G+F EA
Sbjct: 401 TQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEA 460

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL 634
           +++I  +  KP   +W +LL GCRIHGN+ L  +AAE LF++ P +  TYV L+N+YA  
Sbjct: 461 ENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANIYATA 520

Query: 635 GRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEM 694
           G W + A++RK M DRGV K+PG SWI +   VHVFLV D +HP+++ + ++L +L   M
Sbjct: 521 GMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLGKLSKRM 580

Query: 695 RKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCH 754
           ++ G+VPDT FVLHD+E +QKE  LS HSEKLAVAFG++  P G  ++V KNLR C DCH
Sbjct: 581 KEEGFVPDTNFVLHDVEDEQKEQNLSYHSEKLAVAFGIISTPEGTPIKVFKNLRTCVDCH 640

Query: 755 NAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            A KF+SK+  R+I+VRD  RFH F DG CSC DYW
Sbjct: 641 TAIKFISKITNRKIIVRDSNRFHFFEDGHCSCRDYW 676



 Score =  189 bits (479), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 155/545 (28%), Positives = 256/545 (46%), Gaps = 93/545 (17%)

Query: 13  ANRYASQLQLCDPRNPITSSL---ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYA 69
           A+ Y++ +Q C     I S L    + VH H+  SGF P   I+NRL+++Y K   L+ +
Sbjct: 70  ASVYSTLIQSC-----IKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDS 124

Query: 70  RTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSN 129
           + LFDE+P+ D+ +   LI+ Y+    ++ A+ +F+K P   RD   + AMI+ Y  +  
Sbjct: 125 QKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMP--ERDNFSWTAMISGYVRHDR 182

Query: 130 GHAAIELFRDMRR-DDVKPDNFTFTSVLSALALIVEEEKQCM----QMHCTVVKSGTGLF 184
            + A+ELFR M+R D+ K + FT +S L+A A +      C+    ++H  ++++G    
Sbjct: 183 PNEALELFRMMKRSDNSKSNKFTVSSALAAAAAV-----PCLRIGKEIHGYIMRTGLDSD 237

Query: 185 TSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAA 244
             V +AL  +Y KC S         +  AR +FD+M +RD ++WT M+  Y         
Sbjct: 238 EVVWSALSDMYGKCGS---------IEEARHIFDKMVDRDIVTWTAMIDRY--------- 279

Query: 245 REFLDG-MSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ 303
             F DG   E   +  + L SG            I+ +EFT++ V++ACAN     LGK+
Sbjct: 280 --FQDGRRKEGFDLFADLLRSG------------IRPNEFTFSGVLNACANQTSEELGKK 325

Query: 304 VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV 363
           VH Y+ R    P   FS    +ALV +Y KCG +  A  +F + P+ DL SW ++++ Y 
Sbjct: 326 VHGYMTRVGFDP---FSFAA-SALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGY- 380

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
                                         AQNG  +E ++ F  +   G +P    F G
Sbjct: 381 ------------------------------AQNGQPDEAIRYFELLVKSGTQPDHITFVG 410

Query: 424 AITSCAGLGALENGRQ-LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-N 481
            +++CA  G ++ G    H+     G   +      +I + AR G  + A  + + M   
Sbjct: 411 VLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMK 470

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRR 540
            D   W +++     HGN   A    E + +  I P+   T++T+ +    AG+  E  +
Sbjct: 471 PDKFLWASLLGGCRIHGNLKLAQRAAEALFE--IEPENPATYVTLANIYATAGMWSEVAK 528

Query: 541 YFETM 545
             +TM
Sbjct: 529 IRKTM 533



 Score =  183 bits (465), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 188/360 (52%), Gaps = 16/360 (4%)

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           Y+++I +C  S L + GK+VH ++  +   P     L + N L+ +Y KC  + +++ +F
Sbjct: 73  YSTLIQSCIKSRLLQQGKKVHQHIKLSGFVP----GLFILNRLLEMYAKCDSLMDSQKLF 128

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           ++MPERDL SWN ++S Y   GL+ EAKSLF+ M ER+  SWT MISG  ++    E L+
Sbjct: 129 DEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALE 188

Query: 405 LFSQM-RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
           LF  M R +  K   +  + A+ + A +  L  G+++H  ++ +G DS     +AL  MY
Sbjct: 189 LFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMY 248

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
            +CG +E A  +F+ M + D V+W AMI    Q G      +L+  +L+ GI P+  TF 
Sbjct: 249 GKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFS 308

Query: 524 TVLSACNHAGLVKEGRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580
            VL+AC +    + G++    +HG     G  P     +  + +  + G    A+ V   
Sbjct: 309 GVLNACANQTSEELGKK----VHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKE 364

Query: 581 LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ--LMPHHAGTYVLLSNMYANLGRWD 638
            P +P    W +L+AG   +G  D  I+  E L +    P H  T+V + +  A+ G  D
Sbjct: 365 TP-QPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHI-TFVGVLSACAHAGLVD 422



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 10/130 (7%)

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
           L Q    +E L++  Q+     KP    ++  I SC     L+ G+++H  +  SG+   
Sbjct: 49  LCQQNRLKEALQILHQID----KPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPG 104

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           L   N L+ MYA+C  +  +  +F+ MP  D  SWN +I+   + G    A  L+++M  
Sbjct: 105 LFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKM-- 162

Query: 513 EGILPDRITF 522
               P+R  F
Sbjct: 163 ----PERDNF 168


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 285/775 (36%), Positives = 415/775 (53%), Gaps = 102/775 (13%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y   L+ C  +  + +  A+ VH  +I S  +   H++N L+ +Y +  +L  AR +FD 
Sbjct: 31  YVEVLKRCLKQKDLMA--AKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFD- 87

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
                      L+    AS                      +NAMI  Y  + +   A+ 
Sbjct: 88  ----------ALVKKSGAS----------------------WNAMIAGYVEHKHAEDAMR 115

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LFR+M  + V+P+  T+  +L A A +    K   ++H  +   G      V  AL+ +Y
Sbjct: 116 LFREMCHEGVQPNAGTYMIILKACASL-SALKWGKEVHACIRHGGLESDVRVGTALLRMY 174

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            KC S         +  ARR+FD +   D +SWT M+  Y ++     A   +  M E  
Sbjct: 175 GKCGS---------INEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQM-EQE 224

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           G   NA+                     TY S+++ACA+ G  +  K+VH + L      
Sbjct: 225 GFKPNAI---------------------TYVSILNACASEGALKWVKRVHRHAL----DA 259

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
             E  + V  ALV +Y K G +++AR +F++M  RD+VSWN ++ A+             
Sbjct: 260 GLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAF------------- 306

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
                             A++G G E   LF QM+ EG KP    F   + +CA  GALE
Sbjct: 307 ------------------AEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALE 348

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
             +++H   + SG +  +  G AL+ MY++ G ++ A  VF+ M   + VSWNAMI+ L 
Sbjct: 349 WVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLA 408

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
           QHG G  A+E++ +M   G+ PDR+TF+ VLSAC+HAGLV EGR  +  M   YGI P  
Sbjct: 409 QHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDV 468

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
            H    +DLL RAG+  EAK  ID++   P    W ALL  CR +GN++LG   A++  +
Sbjct: 469 SHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLK 528

Query: 616 LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
           L P +A TYVLLSN+YA  G+WD  + VR +MR+RG++KEPG SWIEVDNK+H FLV D+
Sbjct: 529 LDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVADS 588

Query: 676 AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKL 735
           +HPE + + +  ++++ +++  GY+PDT+ VL +     KE  + +HSEKLA+ +GLM  
Sbjct: 589 SHPECKEINESKDKVIEKIKAEGYIPDTRLVLKNKNMKDKELDICSHSEKLAIVYGLMHT 648

Query: 736 PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           P G  +RV KNLR+C DCH A K +SKV GREI+VRD  RFHHF+DG CSCGDYW
Sbjct: 649 PPGNPIRVFKNLRVCTDCHGATKLISKVEGREIIVRDANRFHHFKDGVCSCGDYW 703



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 143/500 (28%), Positives = 232/500 (46%), Gaps = 84/500 (16%)

Query: 127 NSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS 186
           N+   A + L   ++R  +  D+F +  VL    L  ++     Q+H  ++KS       
Sbjct: 7   NTLSEAIVVLMNRLQRGLI-TDSFMYVEVLKR-CLKQKDLMAAKQVHDCIIKSRMEQNAH 64

Query: 187 VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL-DAAR 245
           V+N L+ VY++C           +  AR VFD + ++   SW  M+ GYV++ +  DA R
Sbjct: 65  VMNNLLHVYIEC---------GRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMR 115

Query: 246 EFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
            F +   E V                       Q +  TY  ++ ACA+    + GK+VH
Sbjct: 116 LFREMCHEGV-----------------------QPNAGTYMIILKACASLSALKWGKEVH 152

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365
           A +         E  + V  AL+ +Y KCG +NEAR IF+ +   D++SW  ++ AY   
Sbjct: 153 ACI----RHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAY--- 205

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425
                                       AQ+G G+E  +L  QM  EGFKP    +   +
Sbjct: 206 ----------------------------AQSGNGKEAYRLMLQMEQEGFKPNAITYVSIL 237

Query: 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV 485
            +CA  GAL+  +++H   + +G +  +  G AL+ MYA+ G ++ A  VF+ M   D V
Sbjct: 238 NACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVV 297

Query: 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETM 545
           SWN MI A  +HG G  A +L+ QM  EG  PD I FL++L+AC  AG ++    + + +
Sbjct: 298 SWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALE----WVKKI 353

Query: 546 HGPYGIPPGEDHYAR----FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
           H  + +  G +   R     + +  ++G   +A+ V D +  +     W A+++G   HG
Sbjct: 354 H-RHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVS-WNAMISGLAQHG 411

Query: 602 NIDLGIQAAEQLFQLMPHHA 621
              LG Q A ++F+ M  H 
Sbjct: 412 ---LG-QDALEVFRRMTAHG 427



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 106/240 (44%), Gaps = 11/240 (4%)

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478
           + +   +  C     L   +Q+H  ++ S  + +    N L+ +Y  CG ++ A CVF+ 
Sbjct: 29  FMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDA 88

Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG 538
           +      SWNAMIA   +H +   A+ L+ +M  EG+ P+  T++ +L AC     +K G
Sbjct: 89  LVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWG 148

Query: 539 RRYFETM-HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
           +     + HG  G+          + +  + G  +EA+ + D+L        W  ++   
Sbjct: 149 KEVHACIRHG--GLESDVRVGTALLRMYGKCGSINEARRIFDNL-MNHDIISWTVMIGAY 205

Query: 598 RIHGNIDLGIQAAEQLFQLMPH----HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653
              GN   G +A   + Q+       +A TYV + N  A+ G      RV +   D G++
Sbjct: 206 AQSGN---GKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLE 262


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 283/764 (37%), Positives = 433/764 (56%), Gaps = 77/764 (10%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            +S+HA  I S      ++ N  + +Y K  +L  AR +FD     ++ +  TLI+AY+ 
Sbjct: 27  GKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNVFSFNTLISAYAK 86

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
              V++A ++F++ P    D+V YN +I AY+   +   A +LF +MR   +  D FT +
Sbjct: 87  ESYVEVAHQLFDEMP--QPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLS 144

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
            +++A  + V   +   Q+H   V +G   + SV NALI+ Y         S    +  A
Sbjct: 145 GIITACGINVGLIR---QLHALSVVTGLDSYVSVGNALITSY---------SKNGFLKEA 192

Query: 214 RRVFDEMPE-RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           RR+F  + E RDE+SW +M+  Y+++     A E                        L+
Sbjct: 193 RRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELY----------------------LE 230

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           M +  + +D FT  SV++A  N      G Q HA L+++           V + L+ LY 
Sbjct: 231 MTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSH----VGSGLIDLYS 286

Query: 333 KCGK-VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
           KCG  + + R +F+++   DLV WN ++S Y          SL+E +             
Sbjct: 287 KCGGCMLDCRKVFDEISNPDLVLWNTMISGY----------SLYEDL------------- 323

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
                   +E L+ F Q++  G +P D +    I++C+ + +   GRQ+H   +     S
Sbjct: 324 -------SDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPS 376

Query: 452 S-LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
           + +S  NALI MY++CG +  A  +F+TMP  ++VS+N+MIA   QHG G +++ L+++M
Sbjct: 377 NRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRM 436

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
           L+    P  ITF++VL+AC H G V++G+ YF  M   +GI P   H++  IDLL RAGK
Sbjct: 437 LEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGK 496

Query: 571 FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630
            SEA+ +I+++PF P    W ALL  CRIHGN++L I+AA +L QL P +A  YV+L+N+
Sbjct: 497 LSEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANI 556

Query: 631 YANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQL 690
           Y++ GR  DAA VRKLMRDRGVKK+PGCSWIEV+ ++H+F+ +DT HP  + + +YLE++
Sbjct: 557 YSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEM 616

Query: 691 VLEMRKLGYVPDTKFVL----HDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKN 746
           + +++K+GY P+ +         +   ++E  L  HSEKLAV+FGLM    G  + V KN
Sbjct: 617 MRKIKKVGYTPEVRSASVGGDDRVWQREEELRLGHHSEKLAVSFGLMSTREGEPILVFKN 676

Query: 747 LRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           LRIC DCHNA K++S+VV REI VRD  RFH F+DG+CSCG YW
Sbjct: 677 LRICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQCSCGGYW 720



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 179/348 (51%), Gaps = 38/348 (10%)

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
           ++   +  C      R GK +HA  +++   PT  +   ++N  + LY KC +++ AR +
Sbjct: 10  SFRQFLKTCIAHRDLRTGKSLHALYIKSFV-PTSTY---LSNHFLLLYSKCRRLSAARRV 65

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
           F+   + ++ S+N ++SAY     ++ A  LF+ M + + +S+  +I+  A+ G  +   
Sbjct: 66  FDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAF 125

Query: 404 KLFSQMRLEGFKPCD-YAFAGAITSCA-GLGALENGRQLHAQLVHSGYDSSLSAGNALIT 461
           +LF +MR E F   D +  +G IT+C   +G +   RQLHA  V +G DS +S GNALIT
Sbjct: 126 QLFLEMR-EAFLDMDGFTLSGIITACGINVGLI---RQLHALSVVTGLDSYVSVGNALIT 181

Query: 462 MYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI 520
            Y++ G ++ A  +F+ +  + D VSWN+M+ A  QH  G++A+ELY +M   G++ D  
Sbjct: 182 SYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIF 241

Query: 521 TFLTVLSACN-----------HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
           T  +VL+A             HA L+K G  Y +  H   G+          IDL  + G
Sbjct: 242 TLASVLTAFTNVQDLLGGLQFHAKLIKSG--YHQNSHVGSGL----------IDLYSKCG 289

Query: 570 K-FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
               + + V D +   P   +W  +++G  ++   DL  +A E   QL
Sbjct: 290 GCMLDCRKVFDEIS-NPDLVLWNTMISGYSLYE--DLSDEALECFRQL 334



 Score = 55.8 bits (133), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 32/156 (20%)

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-------------------------- 447
           F    ++F   + +C     L  G+ LHA  + S                          
Sbjct: 4   FSSLLHSFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAAR 63

Query: 448 -----GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
                 +D ++ + N LI+ YA+   VE A+ +F+ MP  DSVS+N +IAA  + G+   
Sbjct: 64  RVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQP 123

Query: 503 AIELYEQMLKEGILPDRITFLTVLSACN-HAGLVKE 537
           A +L+ +M +  +  D  T   +++AC  + GL+++
Sbjct: 124 AFQLFLEMREAFLDMDGFTLSGIITACGINVGLIRQ 159


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 263/635 (41%), Positives = 369/635 (58%), Gaps = 57/635 (8%)

Query: 167 KQCMQMHCTVVKSGT-GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDE 225
           K+  Q+H  +  SG+ GL+ S  N L+ +Y KC S         +  A +VFDEM  RD 
Sbjct: 136 KEGKQVHAHIKTSGSIGLYIS--NRLLDMYAKCGS---------LVDAEKVFDEMVHRDL 184

Query: 226 LSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR-------ELKMLMLRI 278
            SW  M++GYVK    + AR   D M      +W A+ISG V         EL  LM + 
Sbjct: 185 CSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKH 244

Query: 279 QLDEFTYTSVISACANSGL---FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG 335
              +    ++ SA A S       +GK++H +++R                         
Sbjct: 245 DYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGL---------------------- 282

Query: 336 KVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQ 395
                        + D V W ++L  Y   G I+EA+ +F+ M ER+++SWT MI    +
Sbjct: 283 -------------DSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLK 329

Query: 396 NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSA 455
           NG  EEG  LF  +      P D+ FAG + +CA L A + G+Q+HA +V  G+DS  SA
Sbjct: 330 NGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSA 389

Query: 456 GNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI 515
            +AL+ MY++CG +E A  VF  +P  D  SW +++    QHG   +A+  +E +LK G 
Sbjct: 390 ASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGT 449

Query: 516 LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAK 575
            PD I F+ VLSAC HAGLV +G  YF ++   +G+    DHYA  IDLL RAG+F+EA+
Sbjct: 450 KPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAE 509

Query: 576 DVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLG 635
            +I+ +P KP   IW ALL GCRIHGN++L  +AA+ LF++ P +  TYV L+N+YA+ G
Sbjct: 510 SIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLANIYASAG 569

Query: 636 RWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMR 695
              + A +R+ M  RG+ K+PG SWIE+  +VHVF V D +HP+++ + +YL +L   M+
Sbjct: 570 MRAEEANIRETMDSRGIVKKPGMSWIEIRREVHVFSVGDNSHPKSKEILEYLSELSKRMK 629

Query: 696 KLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHN 755
           ++GYVPDT FVLHD+E +QKE  LS HSEKLAVAFG++  P G  ++V KNLR C DCHN
Sbjct: 630 EVGYVPDTNFVLHDVELEQKEENLSYHSEKLAVAFGIISTPSGTPIKVFKNLRTCVDCHN 689

Query: 756 AFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           A KF+S + GR+I+VRD  RFH F  G CSC DYW
Sbjct: 690 AIKFISNITGRKIIVRDSNRFHCFEGGSCSCKDYW 724



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 149/541 (27%), Positives = 243/541 (44%), Gaps = 80/541 (14%)

Query: 10  RTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYA 69
           +  A+ Y + L+ C  +  +     + VHAH+ +SG     +I NRL+D+Y K   LV A
Sbjct: 116 KPYASIYLTLLKFCLKQRALKE--GKQVHAHIKTSG-SIGLYISNRLLDMYAKCGSLVDA 172

Query: 70  RTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSN 129
             +FDE+   D+ +   +I+ Y    N + AR +F+K P   RD   + A+I+    ++ 
Sbjct: 173 EKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMP--NRDNFSWTAIISGCVQHNR 230

Query: 130 GHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLN 189
              A+EL+R M++ D    N    S   A +  +       ++H  +++ G      V  
Sbjct: 231 PEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWC 290

Query: 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD 249
           +L+ +Y KC S         +  AR +FD+M ERD +SWTTM+  Y+KN           
Sbjct: 291 SLLDMYGKCGS---------IEEARYIFDKMEERDVVSWTTMIHTYLKN----------- 330

Query: 250 GMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
           G  E     +  L++             I  ++FT+  V++ACA+     LGKQ+HAY++
Sbjct: 331 GRREEGFALFRHLMNS-----------NIMPNDFTFAGVLNACADLAAEDLGKQIHAYMV 379

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLID 369
           R        FS    +ALV +Y KCG +  A+ +F  +P+ DL SW ++L  Y       
Sbjct: 380 RV---GFDSFS-SAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGY------- 428

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
                                   AQ+G  ++ L  F  +   G KP   AF G +++CA
Sbjct: 429 ------------------------AQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACA 464

Query: 430 GLGALENGRQ-LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSW 487
             G ++ G +  H+     G   ++     +I + AR G    A  + N MP   D   W
Sbjct: 465 HAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIW 524

Query: 488 NAMIAALGQHGNGARAIELYEQMLKE--GILPDR-ITFLTVLSACNHAGLVKEGRRYFET 544
            A++     HGN    +EL ++  K    I P+   T++T+ +    AG+  E     ET
Sbjct: 525 AALLGGCRIHGN----LELAKRAAKSLFEIEPENPATYVTLANIYASAGMRAEEANIRET 580

Query: 545 M 545
           M
Sbjct: 581 M 581



 Score =  169 bits (429), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 177/353 (50%), Gaps = 17/353 (4%)

Query: 269 RELKMLMLRIQLDEFT-YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327
           RE   L+ RI+    + Y +++  C      + GKQVHA++     K +    L ++N L
Sbjct: 105 REAVQLLYRIEKPYASIYLTLLKFCLKQRALKEGKQVHAHI-----KTSGSIGLYISNRL 159

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWT 387
           + +Y KCG + +A  +F++M  RDL SWN ++S YV  G  ++A++LF+ M  R+  SWT
Sbjct: 160 LDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWT 219

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGF-KPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
            +ISG  Q+   EE L+L+  M+   + K      + A+ + A + +L  G+++H  ++ 
Sbjct: 220 AIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMR 279

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
            G DS      +L+ MY +CG +E A  +F+ M   D VSW  MI    ++G       L
Sbjct: 280 MGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFAL 339

Query: 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR----FI 562
           +  ++   I+P+  TF  VL+AC        G++    +H  Y +  G D ++      +
Sbjct: 340 FRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQ----IHA-YMVRVGFDSFSSAASALV 394

Query: 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
            +  + G    AK V + LP +P    W +LL G   HG  D  +   E L +
Sbjct: 395 HMYSKCGDIENAKSVFEILP-QPDLFSWTSLLVGYAQHGQHDKALHFFELLLK 446



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 5/148 (3%)

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
           G+  L+   Q+     KP    +   +  C    AL+ G+Q+HA +  SG    L   N 
Sbjct: 100 GQSRLREAVQLLYRIEKPYASIYLTLLKFCLKQRALKEGKQVHAHIKTSG-SIGLYISNR 158

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           L+ MYA+CG +  A  VF+ M + D  SWN MI+   + GN  +A  L+++M       D
Sbjct: 159 LLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNR----D 214

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMH 546
             ++  ++S C      +E    +  M 
Sbjct: 215 NFSWTAIISGCVQHNRPEEALELYRLMQ 242


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 269/720 (37%), Positives = 407/720 (56%), Gaps = 88/720 (12%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           +I   T +++ Y+   +++ A E+F+   +K R+ V + AMI  ++ +     A   F  
Sbjct: 346 EIYVGTAILSMYTKCGSMEDALEVFD--LVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNK 403

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M    ++P+  TF S+L A +      K+  Q+   ++++G G    V  AL+S+Y KC 
Sbjct: 404 MIESGIEPNRVTFMSILGACS-SPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCG 462

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
           S         +  A RVF+++ +                              +NV VAW
Sbjct: 463 S---------LKDAHRVFEKISK------------------------------QNV-VAW 482

Query: 260 NALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
           NA+I+ YV  E           +L   I+ +  T+TS+++ C +S    LGK VH  ++ 
Sbjct: 483 NAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIM- 541

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
              K   E  L V+NALV+++  CG +  A+++FN MP+RDLVSWN I++ +V       
Sbjct: 542 ---KAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFV------- 591

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
                                   Q+G  +     F  M+  G KP    F G + +CA 
Sbjct: 592 ------------------------QHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACAS 627

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
             AL  GR+LHA +  + +D  +  G  LI+MY +CG +E A+ VF+ +P  +  SW +M
Sbjct: 628 PEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSM 687

Query: 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
           IA   QHG G  A+EL+ QM +EG+ PD ITF+  LSAC HAGL++EG  +F++M   + 
Sbjct: 688 IAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMK-EFN 746

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
           I P  +HY   +DL  RAG  +EA + I  +  +P + +W ALL  C++H N++L  +AA
Sbjct: 747 IEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAA 806

Query: 611 EQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVF 670
           ++  +L P+  G +V+LSN+YA  G W + A++RK+M DRGV K+PG SWIEVD KVH F
Sbjct: 807 QKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTF 866

Query: 671 LVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAF 730
             DD  HP+ + ++  LE+L +EMR+LGYVPDT++VLHD+E ++KE AL  HSE+LA+ +
Sbjct: 867 YSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITY 926

Query: 731 GLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           GL+K P    + + KNLR+CGDCH A KF+SK+  R+I+ RD  RFHHF+DG CSCGD+W
Sbjct: 927 GLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 147/543 (27%), Positives = 253/543 (46%), Gaps = 81/543 (14%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           QPDI  R TLI  Y+   N   A+++F+   ++ +D   +N ++  Y  +     A +L 
Sbjct: 142 QPDIFMRNTLINMYAKCGNTISAKQIFDD--MREKDVYSWNLLLGGYVQHGLYEEAFKLH 199

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSG--TGLFTSVLNALISVY 195
             M +D VKPD  TF S+L+A A     +K   +++  ++K+G  T LF  V  ALI+++
Sbjct: 200 EQMVQDSVKPDKRTFVSMLNACADARNVDKG-RELYNLILKAGWDTDLF--VGTALINMH 256

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
           +KC           +G A +VFD +P RD ++WT+M+TG  ++     A      M E  
Sbjct: 257 IKCGD---------IGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEE- 306

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                                 +Q D+  + S++ AC +      GK+VHA +     + 
Sbjct: 307 ---------------------GVQPDKVAFVSLLRACNHPEALEQGKKVHARM----KEV 341

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
             +  + V  A++++Y KCG + +A ++F+ +  R++VSW A+++ +   G IDEA   F
Sbjct: 342 GWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFF 401

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
             M E                                G +P    F   + +C+   AL+
Sbjct: 402 NKMIE-------------------------------SGIEPNRVTFMSILGACSSPSALK 430

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            G+Q+   ++ +GY S      AL++MYA+CG ++ A+ VF  +   + V+WNAMI A  
Sbjct: 431 RGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYV 490

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR-YFETMHGPYGIPPG 554
           QH     A+  ++ +LKEGI P+  TF ++L+ C  +  ++ G+  +F  M    G+   
Sbjct: 491 QHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKA--GLESD 548

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
                  + +    G    AK++ + +P K     W  ++AG   HG      Q A   F
Sbjct: 549 LHVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGK----NQVAFDYF 603

Query: 615 QLM 617
           ++M
Sbjct: 604 KMM 606



 Score =  203 bits (517), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 167/680 (24%), Positives = 286/680 (42%), Gaps = 142/680 (20%)

Query: 5   NADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSL 64
           ++ +I+     Y++ LQLC     +       ++ H+  SG +P   + N LI++Y K  
Sbjct: 102 DSSHIQIYRQTYSALLQLCIKFKNLGD--GERIYNHIKKSGVQPDIFMRNTLINMYAKCG 159

Query: 65  KLVYARTLFDEIPQPDIVARTTLIAAY--------------------------------- 91
             + A+ +FD++ + D+ +   L+  Y                                 
Sbjct: 160 NTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLN 219

Query: 92  --SASDNVKLAREMFNKTPLKMRDT-----------------------VFYN-------- 118
             + + NV   RE++N       DT                       VF N        
Sbjct: 220 ACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVT 279

Query: 119 --AMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTV 176
             +MIT  + +     A  LF+ M  + V+PD   F S+L A     E  +Q  ++H  +
Sbjct: 280 WTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNH-PEALEQGKKVHARM 338

Query: 177 VKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV 236
            + G      V  A++S+Y KC S         M  A  VFD +  R+ +SWT M+ G+ 
Sbjct: 339 KEVGWDTEIYVGTAILSMYTKCGS---------MEDALEVFDLVKGRNVVSWTAMIAGFA 389

Query: 237 KNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSG 296
           ++  +D A  F + M E          SG            I+ +  T+ S++ AC++  
Sbjct: 390 QHGRIDEAFLFFNKMIE----------SG------------IEPNRVTFMSILGACSSPS 427

Query: 297 LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWN 356
             + G+Q+  +++             V  AL+++Y KCG + +A  +F ++ ++++V+WN
Sbjct: 428 ALKRGQQIQDHIIEAGYGSDDR----VRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWN 483

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
           A+++AYV     D A + F+A+                     +EG+K           P
Sbjct: 484 AMITAYVQHEQYDNALATFQALL--------------------KEGIK-----------P 512

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
               F   +  C    +LE G+ +H  ++ +G +S L   NAL++M+  CG + +A  +F
Sbjct: 513 NSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLF 572

Query: 477 NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536
           N MP  D VSWN +IA   QHG    A + ++ M + GI PD+ITF  +L+AC     + 
Sbjct: 573 NDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALT 632

Query: 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           EGRR    +                I +  + G   +A  V   LP K +   W +++AG
Sbjct: 633 EGRR-LHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLP-KKNVYSWTSMIAG 690

Query: 597 CRIHGNIDLGIQAAEQLFQL 616
              HG    G +A E  +Q+
Sbjct: 691 YAQHGR---GKEALELFYQM 707



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/537 (23%), Positives = 253/537 (47%), Gaps = 83/537 (15%)

Query: 111 MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM 170
           ++DT   NA++   S     + A+++   +    ++    T++++L  L +  +      
Sbjct: 72  IKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQ-LCIKFKNLGDGE 130

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           +++  + KSG      + N LI++Y KC ++          +A+++FD+M E+D  SW  
Sbjct: 131 RIYNHIKKSGVQPDIFMRNTLINMYAKCGNTI---------SAKQIFDDMREKDVYSWNL 181

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++ GYV++   + A +  + M ++                       ++ D+ T+ S+++
Sbjct: 182 LLGGYVQHGLYEEAFKLHEQMVQD----------------------SVKPDKRTFVSMLN 219

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           ACA++     G++++  +L    K   +  L V  AL+ ++ KCG + +A  +F+ +P R
Sbjct: 220 ACADARNVDKGRELYNLIL----KAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTR 275

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           DLV+W ++++     G   +A +LF+ M E                              
Sbjct: 276 DLVTWTSMITGLARHGRFKQACNLFQRMEE------------------------------ 305

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
            EG +P   AF   + +C    ALE G+++HA++   G+D+ +  G A+++MY +CG +E
Sbjct: 306 -EGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSME 364

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
            A  VF+ +   + VSW AMIA   QHG    A   + +M++ GI P+R+TF+++L AC+
Sbjct: 365 DALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACS 424

Query: 531 HAGLVKEGRRYFE-TMHGPYGIPPGEDHYAR--FIDLLCRAGKFSEAKDVIDSLPFKPSA 587
               +K G++  +  +   Y    G D   R   + +  + G   +A  V + +  K + 
Sbjct: 425 SPSALKRGQQIQDHIIEAGY----GSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNV 479

Query: 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQ--LMPHHAGTYVLLSNMYAN-----LGRW 637
             W A++     H   D  +   + L +  + P ++ T+  + N+  +     LG+W
Sbjct: 480 VAWNAMITAYVQHEQYDNALATFQALLKEGIKP-NSSTFTSILNVCKSSDSLELGKW 535



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 150/354 (42%), Gaps = 72/354 (20%)

Query: 9   IRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVY 68
           I+  ++ + S L +C   + +   L + VH  ++ +G +   H+ N L+ ++     L+ 
Sbjct: 510 IKPNSSTFTSILNVCKSSDSL--ELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMS 567

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           A+ LF+++P+ D+V+  T+IA +                                  H  
Sbjct: 568 AKNLFNDMPKRDLVSWNTIIAGF--------------------------------VQHGK 595

Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL 188
           N   A + F+ M+   +KPD  TFT +L+A A   E   +  ++H  + ++       V 
Sbjct: 596 N-QVAFDYFKMMQESGIKPDKITFTGLLNACA-SPEALTEGRRLHALITEAAFDCDVLVG 653

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
             LIS+Y KC S         +  A +VF ++P+++  SWT+M+ GY ++     A E  
Sbjct: 654 TGLISMYTKCGS---------IEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELF 704

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
             M +                        ++ D  T+   +SACA++GL   G  +H + 
Sbjct: 705 YQMQQE----------------------GVKPDWITFVGALSACAHAGLIEEG--LHHFQ 740

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
              E    P   +     +V L+ + G +NEA +   +M  E D   W A+L A
Sbjct: 741 SMKEFNIEPR--MEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGA 792



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 131/306 (42%), Gaps = 50/306 (16%)

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG 448
           +++ L++ G   E +++  ++     +     ++  +  C     L +G +++  +  SG
Sbjct: 81  VLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSG 140

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
               +   N LI MYA+CG   +A  +F+ M   D  SWN ++    QHG    A +L+E
Sbjct: 141 VQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHE 200

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH----YARFIDL 564
           QM+++ + PD+ TF+++L+AC  A  V +GR  +  +     +  G D         I++
Sbjct: 201 QMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLI-----LKAGWDTDLFVGTALINM 255

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNI-----------DLGIQA---- 609
             + G   +A  V D+LP +     W +++ G   HG             + G+Q     
Sbjct: 256 HIKCGDIGDATKVFDNLPTRDLVT-WTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVA 314

Query: 610 ----------AEQLFQLMPHHA-------------GTYVLLSNMYANLGRWDDAARVRKL 646
                      E L Q    HA             GT +L  +MY   G  +DA  V  L
Sbjct: 315 FVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAIL--SMYTKCGSMEDALEVFDL 372

Query: 647 MRDRGV 652
           ++ R V
Sbjct: 373 VKGRNV 378


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 274/730 (37%), Positives = 414/730 (56%), Gaps = 78/730 (10%)

Query: 65  KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
           K V++R L +   + D    T L+  Y+   + K  R++F K  L  RD + +N MI   
Sbjct: 247 KAVHSRIL-NAGHESDTAVGTALVKMYAKCGSYKDCRQVFEK--LVNRDLIAWNTMIGGL 303

Query: 125 SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL----ALIVEEEKQCMQMHCTVVKSG 180
           +       A E++  M+R+ V P+  T+  +L+A     AL   +E     +H  V K+G
Sbjct: 304 AEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKE-----IHSRVAKAG 358

Query: 181 TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY 240
                 V NALIS+Y +C S         +  AR VFD+M  +D +SWT M+ G  K+  
Sbjct: 359 FTSDIGVQNALISMYSRCGS---------IKDARLVFDKMVRKDVISWTAMIGGLAKS-- 407

Query: 241 LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRL 300
                          G    AL    V++E++     ++ +  TYTS+++AC++      
Sbjct: 408 ---------------GFGAEALT---VYQEMQQA--GVEPNRVTYTSILNACSSPAALEW 447

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           G+++H  ++             V N LV +Y  CG V +A                    
Sbjct: 448 GRRIHQQVVEAGLATDAH----VGNTLVNMYSMCGSVKDA-------------------- 483

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
                      + +F+ M +R+++++  MI G A +  G+E LKLF +++ EG KP    
Sbjct: 484 -----------RQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVT 532

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
           +   + +CA  G+LE  R++H  +   G+ S  S GNAL++ YA+CG    A+ VF  M 
Sbjct: 533 YINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMT 592

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
             + +SWNA+I    QHG G  A++L+E+M  EG+ PD +TF+++LSAC+HAGL++EGRR
Sbjct: 593 KRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRR 652

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
           YF +M   + I P  +HY   +DLL RAG+  EA+ +I ++PF+ +  IW ALL  CRIH
Sbjct: 653 YFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIH 712

Query: 601 GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSW 660
           GN+ +  +AAE   +L   +A  YV LS+MYA  G WD AA++RKLM  RGV KEPG SW
Sbjct: 713 GNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSW 772

Query: 661 IEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALS 720
           I+V +K+H F+ +D +HP+++ +Y  L++L   M+  GYVPDT+ V+HD++  +KE A+ 
Sbjct: 773 IQVGDKLHYFVAEDRSHPQSEKIYAELDRLTHAMKMKGYVPDTRSVMHDVDEGEKENAVC 832

Query: 721 THSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFR 780
            HSE+LA+A+GL+  P G  + + KNLR+C DCH A KF+SK+V REI+ RD  RFHHF+
Sbjct: 833 HHSERLAIAYGLISTPPGTRIHIFKNLRVCPDCHTATKFISKIVDREIIARDVNRFHHFK 892

Query: 781 DGKCSCGDYW 790
           DG CSCGDYW
Sbjct: 893 DGVCSCGDYW 902



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 159/601 (26%), Positives = 268/601 (44%), Gaps = 83/601 (13%)

Query: 61  CKSLK-LVYARTLFDEIPQ----PDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTV 115
           C  +K LV  R +   I Q    PD      LI  Y    +++ AR+++ K     R   
Sbjct: 33  CIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMERTVH 92

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
            +NAM+  Y        A++L R M++  + PD  T  S LS+       E    ++H  
Sbjct: 93  SWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALE-WGREIHFQ 151

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
            +++G      V N ++++Y KC S         +  AR VFD+M ++  +SWT  + GY
Sbjct: 152 AMQAGLLFDVKVANCILNMYAKCGS---------IEEAREVFDKMEKKSVVSWTITIGGY 202

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
                 + A E    M E  GV  N +                     TY SV++A ++ 
Sbjct: 203 ADCGRSETAFEIFQKM-EQEGVVPNRI---------------------TYISVLNAFSSP 240

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
              + GK VH+ +L        E    V  ALV +Y KCG   + R +F ++  RDL++W
Sbjct: 241 AALKWGKAVHSRIL----NAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAW 296

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           N ++      G                               Y EE  ++++QM+ EG  
Sbjct: 297 NTMIGGLAEGG-------------------------------YWEEASEVYNQMQREGVM 325

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P    +   + +C    AL  G+++H+++  +G+ S +   NALI+MY+RCG ++ A  V
Sbjct: 326 PNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLV 385

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           F+ M   D +SW AMI  L + G GA A+ +Y++M + G+ P+R+T+ ++L+AC+    +
Sbjct: 386 FDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAAL 445

Query: 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
           + GRR  + +    G+          +++    G   +A+ V D +  +     + A++ 
Sbjct: 446 EWGRRIHQQVV-EAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRM-IQRDIVAYNAMIG 503

Query: 596 GCRIHGNIDLGIQAAE-----QLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650
           G   H   +LG +A +     Q   L P    TY+ + N  AN G  + A  +  L+R  
Sbjct: 504 GYAAH---NLGKEALKLFDRLQEEGLKPDKV-TYINMLNACANSGSLEWAREIHTLVRKG 559

Query: 651 G 651
           G
Sbjct: 560 G 560



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 164/359 (45%), Gaps = 42/359 (11%)

Query: 279 QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
           Q++   Y  ++  C        G+QVH ++++    P  ++++   NAL+ +Y +CG + 
Sbjct: 20  QVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVP-DQYTV---NALINMYIQCGSIE 75

Query: 339 EARDIFNQMP--ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
           EAR ++ ++   ER + SWNA++  Y+  G I++A                         
Sbjct: 76  EARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKA------------------------- 110

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
                 LKL  QM+  G  P        ++SC   GALE GR++H Q + +G    +   
Sbjct: 111 ------LKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVA 164

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
           N ++ MYA+CG +E A  VF+ M     VSW   I      G    A E++++M +EG++
Sbjct: 165 NCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVV 224

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
           P+RIT+++VL+A +    +K G+     +    G           + +  + G + + + 
Sbjct: 225 PNRITYISVLNAFSSPAALKWGKAVHSRILNA-GHESDTAVGTALVKMYAKCGSYKDCRQ 283

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ--LMPHHAGTYVLLSNMYAN 633
           V + L  +     W  ++ G    G  +   +   Q+ +  +MP+   TYV+L N   N
Sbjct: 284 VFEKLVNRDLIA-WNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKI-TYVILLNACVN 340



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 151/350 (43%), Gaps = 77/350 (22%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIY--CKSLKLVYARTLF 73
           Y S L  C   +P      R +H  ++ +G     H+ N L+++Y  C S+K   AR +F
Sbjct: 432 YTSILNACS--SPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVK--DARQVF 487

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
           D + Q DIVA   +I  Y+A                                HN  G  A
Sbjct: 488 DRMIQRDIVAYNAMIGGYAA--------------------------------HNL-GKEA 514

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
           ++LF  ++ + +KPD  T+ ++L+A A     E    ++H  V K G    TSV NAL+S
Sbjct: 515 LKLFDRLQEEGLKPDKVTYINMLNACANSGSLE-WAREIHTLVRKGGFFSDTSVGNALVS 573

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
            Y KC S            A  VF++M +R+ +SW  ++ G  ++     A +  +    
Sbjct: 574 TYAKCGS---------FSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFE---- 620

Query: 254 NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
                             +M M  ++ D  T+ S++SAC+++GL   G++    + +  A
Sbjct: 621 ------------------RMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFA 662

Query: 314 -KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
             PT E        +V L  + G+++EA  +   MP + +   W A+L A
Sbjct: 663 IIPTIEHY----GCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGA 708


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 273/798 (34%), Positives = 415/798 (52%), Gaps = 79/798 (9%)

Query: 3   MKNADYIRTLANRYASQLQLCDPRNPITSSLA--------RSVHAHMISSGFKPREHIIN 54
           +K    + T+A   ++      P +P+ S L         + VH   I  G      + N
Sbjct: 16  VKKPKQMTTIAATSSALKSFSPPTHPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQN 75

Query: 55  RLIDIYCKSL--KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMR 112
           R++   C        YAR LFDEIP+P++                               
Sbjct: 76  RVMTFCCTHEYGDFQYARRLFDEIPEPNLF------------------------------ 105

Query: 113 DTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQM 172
               +N MI  YS        + L+ +M R  VKPD +TF  +       +  E    Q+
Sbjct: 106 ---IWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYG-RQL 161

Query: 173 HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMM 232
           H  V+K G      V  AL+ +Y+ C           +  AR VFD  P+ D ++W  ++
Sbjct: 162 HGHVLKHGLQYNVFVHTALVQMYLLC---------GQLDTARGVFDVCPKADVITWNMII 212

Query: 233 TGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISAC 292
           + Y K    + +R     M +                       ++     T   V+SAC
Sbjct: 213 SAYNKVGKFEESRRLFLVMEDK----------------------QVLPTTVTLVLVLSAC 250

Query: 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL 352
           +     R GK+VH+Y+   +     E +L + NA++ +Y  CG+++ A  IF  M  RD+
Sbjct: 251 SKLKDLRTGKKVHSYVKNCKV----ESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDI 306

Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
           +SW  I+S + + G ID A++ F+ M E++ +SWT MI G  ++   +E L+LF  M+  
Sbjct: 307 ISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQAT 366

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
             KP ++     +T+CA LGALE G  +   +  +   + L   NALI MY +CG V+ A
Sbjct: 367 NVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKA 426

Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
             +F  M   D  +W AMI  L  +G+G +A++++  MLK  ILPD IT++ VLSAC H 
Sbjct: 427 ESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHT 486

Query: 533 GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592
           GLV +GR+YF  M   +GI P   HY   +DLL RAG+  EA +VI+++P K ++ +W A
Sbjct: 487 GLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGA 546

Query: 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           LLAGCR++   D+     +Q+ +L P +   YVLL N+YA   RW+D   +R++M D+G+
Sbjct: 547 LLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGI 606

Query: 653 KKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMES 712
           KK PGCS IE++ +VH F+  D +HP+ + +   L+++  +++  GY PD   V  D+  
Sbjct: 607 KKXPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAE 666

Query: 713 DQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRD 772
           + KE ++  HSEKLA+AFGL+  P G T+R+ KNLR+C DCHN  K +SKV  RE++VRD
Sbjct: 667 EDKENSVFRHSEKLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRD 726

Query: 773 GKRFHHFRDGKCSCGDYW 790
             RFHHF+ G CSC DYW
Sbjct: 727 RTRFHHFKHGLCSCKDYW 744


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  507 bits (1305), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 263/762 (34%), Positives = 425/762 (55%), Gaps = 74/762 (9%)

Query: 34   ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
             R +H H++                           R L +     DI+  + L+  YS 
Sbjct: 396  GRELHGHLV---------------------------RNLLN----SDIILGSALVDMYSK 424

Query: 94   SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD-VKPDNFTF 152
               V+ A ++F    L  R+ V YNA++  Y        A+EL+ DM+ +D ++PD FTF
Sbjct: 425  CGMVEEAHQVFR--SLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTF 482

Query: 153  TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            T++L+ L      + Q  Q+H  ++++       V   L+ +Y +C           +  
Sbjct: 483  TTLLT-LCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSEC---------GRLNY 532

Query: 213  ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
            A+ +F+ M ER+  SW +M+ GY +N     A      M  N                  
Sbjct: 533  AKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLN------------------ 574

Query: 273  MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                 I+ D F+ +S++S+C +    + G+++H +++R     T E    +   LV +Y 
Sbjct: 575  ----GIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRN----TMEEEGILQVVLVDMYA 626

Query: 333  KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
            KCG ++ A  +++Q  ++D++  N ++SA+V++G  ++AK+LF+ M +RN   W  +++G
Sbjct: 627  KCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAG 686

Query: 393  LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY-DS 451
             A  G  +E    F +M     +         +  C+ L ALE+G QLH+ ++  G+ + 
Sbjct: 687  YANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNC 746

Query: 452  SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
            S+    AL+ MY++CG +  A  VF+ M   + VSWNAMI+   +HG    A+ LYE+M 
Sbjct: 747  SVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMP 806

Query: 512  KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571
            K+G+ P+ +TFL +LSAC+H GLV+EG R F +M   Y I    +HY   +DLL RAG+ 
Sbjct: 807  KKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRL 866

Query: 572  SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631
             +AK+ ++ +P +P    W ALL  CR+H ++D+G  AA++LF+L P + G YV++SN+Y
Sbjct: 867  EDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIY 926

Query: 632  ANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLV 691
            A  GRW +   +R++M+ +GVKK+PG SWIE+++++ +F      HP+ + +Y  L  L 
Sbjct: 927  AAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLT 986

Query: 692  LEMRKLGYVPDTKFVLH---DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLR 748
            L+ + LGY+PDT F+L    D++ +++E  L  HSE+LA++ GL+ LP  +T+RV KNLR
Sbjct: 987  LQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLR 1046

Query: 749  ICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            ICGDCH A KF+SK+ GR I+ RD  RFHHF +GKCSCGDYW
Sbjct: 1047 ICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 1088



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 156/603 (25%), Positives = 262/603 (43%), Gaps = 106/603 (17%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y+S +Q C   N       +S+H  MIS+G+ P  +++ +++ +Y +S  L         
Sbjct: 74  YSSLIQDCIDSNSFQR--GKSIHTQMISNGYNPDAYLMTKILMLYARSGCL--------- 122

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
                              D++  AR++F + P   R+   +N MI AY+   +    + 
Sbjct: 123 -------------------DDLCYARKLFEEMP--ERNLTAWNTMILAYARVDDYMEVLR 161

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           L+  MR      D FTF SV+ A  + +E+     Q+  +VVK+G      V  AL+  Y
Sbjct: 162 LYGRMRGSGNFSDKFTFPSVIKA-CIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGY 220

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            +            M  A    DE+     ++W  ++ GYVK    + A    D      
Sbjct: 221 ARF---------GWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFD------ 265

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                           +ML + +  D FT+ S +  C        GKQVH+ L+    K 
Sbjct: 266 ----------------RMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKG 309

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
                  V NAL+ +Y KC        +F++M ER+ V+WN+I+SA              
Sbjct: 310 ----DTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAE------------- 352

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
                             AQ G+  + L LF +M+  G+K   +     + + AGL  + 
Sbjct: 353 ------------------AQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIG 394

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            GR+LH  LV +  +S +  G+AL+ MY++CG+VE A+ VF ++   + VS+NA++A   
Sbjct: 395 KGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYV 454

Query: 496 QHGNGARAIELYEQMLKE-GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
           Q G    A+ELY  M  E GI PD+ TF T+L+ C +     +GR+    +     I   
Sbjct: 455 QEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRA-NITKN 513

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
                  + +    G+ + AK++ + +  + +A  W +++ G + +G      Q A +LF
Sbjct: 514 IIVETELVHMYSECGRLNYAKEIFNRMA-ERNAYSWNSMIEGYQQNGE----TQEALRLF 568

Query: 615 QLM 617
           + M
Sbjct: 569 KQM 571



 Score =  177 bits (448), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 142/617 (23%), Positives = 262/617 (42%), Gaps = 133/617 (21%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           +AS L++C      +    + VH+ +I+ GFK    + N LID+Y K         +FDE
Sbjct: 279 FASALRVCGALR--SRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDE 336

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           + +                                 R+ V +N++I+A +   + + A+ 
Sbjct: 337 MGE---------------------------------RNQVTWNSIISAEAQFGHFNDALV 363

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LF  M+    K + F   S+L A A + +  K   ++H  +V++       + +AL+ +Y
Sbjct: 364 LFLRMQESGYKSNRFNLGSILMASAGLADIGKG-RELHGHLVRNLLNSDIILGSALVDMY 422

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            KC          ++  A +VF  + ER+E+S+  ++ GYV+    + A E    M    
Sbjct: 423 SKC---------GMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSED 473

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           G                     IQ D+FT+T++++ CAN      G+Q+HA+L+R     
Sbjct: 474 G---------------------IQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITK 512

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
               ++ V   LV +Y +CG++N A++IFN+M ER+  SWN+++  Y             
Sbjct: 513 ----NIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGY------------- 555

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
                              QNG  +E L+LF QM+L G KP  ++ +  ++SC  L   +
Sbjct: 556 ------------------QQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQ 597

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE------------------------- 470
            GR+LH  +V +  +        L+ MYA+CG ++                         
Sbjct: 598 KGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFV 657

Query: 471 ------AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
                  A  +F+ M   ++  WN+++A     G    +   + +ML+  I  D +T +T
Sbjct: 658 NSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVT 717

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584
           +++ C+    ++ G +    +     +          +D+  + G  ++A+ V D++  K
Sbjct: 718 IVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGK 777

Query: 585 PSAPIWEALLAGCRIHG 601
                W A+++G   HG
Sbjct: 778 NIVS-WNAMISGYSKHG 793



 Score =  166 bits (421), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 120/428 (28%), Positives = 191/428 (44%), Gaps = 68/428 (15%)

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMH 173
            V +NA+I  Y    +   A  +F  M +  V PDNFTF S L     +   +    Q+H
Sbjct: 241 VVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGG-KQVH 299

Query: 174 CTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMT 233
             ++  G    T V NALI +Y KC             +  +VFDEM ER++++W ++++
Sbjct: 300 SKLIACGFKGDTFVGNALIDMYAKCDDEE---------SCLKVFDEMGERNQVTWNSIIS 350

Query: 234 GYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACA 293
              +  + + A      M E          SGY            + + F   S++ A A
Sbjct: 351 AEAQFGHFNDALVLFLRMQE----------SGY------------KSNRFNLGSILMASA 388

Query: 294 NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV 353
                  G+++H +L+R          + + +ALV +Y KCG V EA  +F  + ER+ V
Sbjct: 389 GLADIGKGRELHGHLVRNLLNS----DIILGSALVDMYSKCGMVEEAHQVFRSLLERNEV 444

Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE- 412
           S+NA+L+ YV                               Q G  EE L+L+  M+ E 
Sbjct: 445 SYNALLAGYV-------------------------------QEGKAEEALELYHDMQSED 473

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
           G +P  + F   +T CA       GRQ+HA L+ +    ++     L+ MY+ CG +  A
Sbjct: 474 GIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYA 533

Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
             +FN M   ++ SWN+MI    Q+G    A+ L++QM   GI PD  +  ++LS+C   
Sbjct: 534 KEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSL 593

Query: 533 GLVKEGRR 540
              ++GR 
Sbjct: 594 SDSQKGRE 601



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 111/253 (43%), Gaps = 38/253 (15%)

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
           ++   Y+S+I  C +S  F+ GK +H  ++     P                        
Sbjct: 69  VNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNP------------------------ 104

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDE---AKSLFEAMRERNLLSWTVMISGLAQN 396
                      D      IL  Y  +G +D+   A+ LFE M ERNL +W  MI   A+ 
Sbjct: 105 -----------DAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARV 153

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
               E L+L+ +MR  G     + F   I +C  +  +   RQL + +V +G + +L  G
Sbjct: 154 DDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVG 213

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
            AL+  YAR G ++ A    + +     V+WNA+IA   +  +   A  ++++MLK G+ 
Sbjct: 214 GALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVC 273

Query: 517 PDRITFLTVLSAC 529
           PD  TF + L  C
Sbjct: 274 PDNFTFASALRVC 286


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 258/621 (41%), Positives = 368/621 (59%), Gaps = 35/621 (5%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           ++H  +VKSG      + N L+  Y KC         +L+  A  +FDEMP+RD +SW +
Sbjct: 23  KIHAQIVKSGLNQCQPLPNTLLDAYGKC---------NLLQDAHYLFDEMPQRDHVSWAS 73

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++T Y +    +        M                         R+Q D F Y +++ 
Sbjct: 74  ILTAYNQAKLPNKTLSIFHYMFTTD---------------------RLQPDHFVYATLLK 112

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           ACA+    RLGKQVHA   R    P  +  + V ++LV +Y KCG  + AR +F+ +  +
Sbjct: 113 ACASLCSLRLGKQVHA---RFVLSPFVDDDV-VKSSLVDMYAKCGLPSIARSVFDSILVK 168

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
             VSW A+LS Y  +GL DEA  LF     RNL SWT +ISGL Q+GY  +G  +F +MR
Sbjct: 169 TSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMR 228

Query: 411 LEGFKPCD-YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
            EG    D    +  + +CA L  L  G+Q+H  ++ SGY+S L   NAL+ MYA+C  +
Sbjct: 229 REGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDI 288

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
            AA  VFN M + D VSW ++I    QHG    A++LY+QM+   I P+ +TF+ ++ AC
Sbjct: 289 LAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYAC 348

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
           +HAGLV +GR+ F+ M   Y I P    +  F+DLL R+G  +EA+D+I ++P KP  P 
Sbjct: 349 SHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPT 408

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
           W ALL+ C+ HGN ++G++ A++L  L  H   TYVLLSN+YA  G+W+  +RVRKLM D
Sbjct: 409 WAALLSACKHHGNTEMGVRIADRLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTD 468

Query: 650 RGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHD 709
             VK++PG S I++  +  VF   +T HP    ++  L++L  EMRK GY+PDT +VLHD
Sbjct: 469 MEVKRKPGYSSIDLGKESQVFHAGETCHPMKDEIFGLLKELDAEMRKRGYIPDTSYVLHD 528

Query: 710 MESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIV 769
           ME  +KE  L  HSE+ AVA+GL+K   G  +R++KNLRICGDCH   K  S +V +EI+
Sbjct: 529 MEEQEKERELFWHSERWAVAYGLLKAVPGTVIRIVKNLRICGDCHTFLKLTSSIVHKEII 588

Query: 770 VRDGKRFHHFRDGKCSCGDYW 790
           VRD  R+HHF+DG+CSC D+W
Sbjct: 589 VRDATRYHHFKDGRCSCNDFW 609



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 145/515 (28%), Positives = 232/515 (45%), Gaps = 97/515 (18%)

Query: 12  LANRYASQLQLCDPRN-PITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYAR 70
           L   Y  +L+LC     P+    A+ +HA ++ SG    + + N L+D Y K   L  A 
Sbjct: 1   LIPSYLHRLKLCTKHQAPLN---AKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAH 57

Query: 71  TLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNG 130
            LFDE+PQ D V+  +++ AY             N+  L  +    ++ M T        
Sbjct: 58  YLFDEMPQRDHVSWASILTAY-------------NQAKLPNKTLSIFHYMFTT------- 97

Query: 131 HAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNA 190
                       D ++PD+F + ++L A A +    +   Q+H   V S       V ++
Sbjct: 98  ------------DRLQPDHFVYATLLKACASLC-SLRLGKQVHARFVLSPFVDDDVVKSS 144

Query: 191 LISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAARE-FLD 249
           L+ +Y KC          L   AR VFD +  +  +SWT M++GY ++   D A E FL 
Sbjct: 145 LVDMYAKC---------GLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLR 195

Query: 250 GMSENVGVAWNALISG-----------YVHRELKMLMLRIQLDEFTYTSVISACANSGLF 298
               N+  +W ALISG           Y+  E++   + I +D    +SV+ ACAN  + 
Sbjct: 196 TPVRNL-YSWTALISGLVQSGYCIDGCYMFIEMRREGVDI-VDPLVLSSVVGACANLAVL 253

Query: 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAI 358
            LGKQ+H  ++ +      E  L ++NALV +Y KC  +  AR++FN+M  RD+VSW +I
Sbjct: 254 GLGKQIHGLVIGSGY----ESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSI 309

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
                                          I G AQ+G  +E L L+ QM L   KP +
Sbjct: 310 -------------------------------IVGAAQHGRAKEALDLYDQMVLAEIKPNE 338

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDS-SLSAGNALITMYARCGVVEAANCVFN 477
             F G I +C+  G +  GR+L   ++     S SL      + + +R G +  A  +  
Sbjct: 339 VTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIK 398

Query: 478 TMPN-VDSVSWNAMIAALGQHGNGARAIELYEQML 511
           TMP+  D  +W A+++A   HGN    + + +++L
Sbjct: 399 TMPHKPDEPTWAALLSACKHHGNTEMGVRIADRLL 433



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 9/173 (5%)

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
           C    A  N +++HAQ+V SG +      N L+  Y +C +++ A+ +F+ MP  D VSW
Sbjct: 12  CTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDHVSW 71

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGIL-PDRITFLTVLSACNHAGLVKEGRRYFETMH 546
            +++ A  Q     + + ++  M     L PD   + T+L AC     ++ G++    +H
Sbjct: 72  ASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQ----VH 127

Query: 547 GPYGIPPGEDH---YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
             + + P  D     +  +D+  + G  S A+ V DS+  K S   W A+L+G
Sbjct: 128 ARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVS-WTAMLSG 179


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 280/778 (35%), Positives = 425/778 (54%), Gaps = 90/778 (11%)

Query: 38  HAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNV 97
           H  +  +GF+    I N L+ +Y +   L  A  +FDEI Q  I                
Sbjct: 178 HGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGI---------------- 221

Query: 98  KLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM------RRDDVKPDNFT 151
                          D + +N++++A+  +SN   A++LF  M      +  + + D  +
Sbjct: 222 --------------DDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIIS 267

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             ++L A   + +   Q  ++H   +++GT     V NALI  Y KC          LM 
Sbjct: 268 IVNILPACGSL-KAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKC---------GLME 317

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM-SENVG---VAWNALISGYV 267
            A +VF+ M  +D +SW  M+ GY ++   +AA E    M  EN+    V W A+I+GY 
Sbjct: 318 NAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYS 377

Query: 268 HREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
            R           +M+      +  T  SV+SACA+ G F  G ++HAY L+        
Sbjct: 378 QRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLK-------- 429

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE-- 376
                 N L+TL    G  +E           DL+ +NA++  Y        A+S+F+  
Sbjct: 430 ------NCLLTLDNDFGGEDE-----------DLMVYNALIDMYSKCRSFKAARSIFDDI 472

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE--GFKPCDYAFAGAITSCAGLGAL 434
            + ERN+++WTVMI G AQ G   + LKLF +M  E  G  P  Y  +  + +CA L A+
Sbjct: 473 PLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAI 532

Query: 435 ENGRQLHAQLV-HSGYDSSLS-AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
             G+Q+HA ++ H  Y+SS     N LI MY++CG V+ A  VF++M    ++SW +M+ 
Sbjct: 533 RIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMT 592

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552
             G HG G+ A++++++M K G +PD ITFL VL AC+H G+V +G  YF++M   YG+ 
Sbjct: 593 GYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLT 652

Query: 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
           P  +HYA  IDLL R+G+  +A   +  +P +P+A +W ALL+ CR+H N++L   A  +
Sbjct: 653 PRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNK 712

Query: 613 LFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLV 672
           L ++   + G+Y L+SN+YA  GRW D AR+R LM+  G+KK PGCSW++       F V
Sbjct: 713 LVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFV 772

Query: 673 DDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGL 732
            D +HP +  +Y  LE L+  ++ +GYVP+T F LHD++ ++K   L  HSEKLA+A+GL
Sbjct: 773 GDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGL 832

Query: 733 MKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +    G  +R+ KNLR+CGDCH+AF ++SK+V  EIVVRD  RFHHF++G CSCG YW
Sbjct: 833 LTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 890



 Score =  193 bits (490), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 162/614 (26%), Positives = 275/614 (44%), Gaps = 79/614 (12%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF 73
           + +AS L+ C   N +       +H  +I+SG       +  +      S   +  R+L 
Sbjct: 38  SHFASLLKECKSANTV-----HQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSL- 91

Query: 74  DEIPQPDIVARTTLIAAY---SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNG 130
                      T ++A+Y    A+D   L  E    +P      V++N +I  +      
Sbjct: 92  ----------GTGVVASYLACGATDYALLVLERVTPSP-----AVWWNLLIREHIKQGRL 136

Query: 131 HAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC-MQMHCTVVKSGTGLFTSVLN 189
            +AI +   M R   +PD+FT   VL A   +     +C    H  +  +G      + N
Sbjct: 137 DSAINVSCRMLRAGTRPDHFTLPHVLKACGEL--PSYRCGSAFHGLICCNGFESNVFICN 194

Query: 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER---DELSWTTMMTGYVKNDYLDAARE 246
           AL+++Y +C S         +  A  +FDE+ +R   D +SW ++++ +VK+     A +
Sbjct: 195 ALVAMYSRCGS---------LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALD 245

Query: 247 FLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
               M+         LI   VH +        + D  +  +++ AC +       K+VH 
Sbjct: 246 LFSKMT---------LI---VHEKPT----NERSDIISIVNILPACGSLKAVPQTKEVHG 289

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366
             +R    P     + V NAL+  Y KCG +  A  +FN M  +D+VSWNA+++ Y  +G
Sbjct: 290 NAIRNGTFP----DVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSG 345

Query: 367 LIDEAKSLFEAMRERNL----LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
             + A  LF+ MR+ N+    ++WT +I+G +Q G   E L LF QM   G  P      
Sbjct: 346 NFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTII 405

Query: 423 GAITSCAGLGALENGRQLHAQLVHS----------GYDSSLSAGNALITMYARCGVVEAA 472
             +++CA LGA   G ++HA  + +          G D  L   NALI MY++C   +AA
Sbjct: 406 SVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAA 465

Query: 473 NCVFNTMP--NVDSVSWNAMIAALGQHGNGARAIELYEQMLKE--GILPDRITFLTVLSA 528
             +F+ +P    + V+W  MI    Q+G+   A++L+ +M+ E  G+ P+  T   +L A
Sbjct: 466 RSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMA 525

Query: 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR-FIDLLCRAGKFSEAKDVIDSLPFKPSA 587
           C H   ++ G++    +   +         A   ID+  + G    A+ V DS+  K SA
Sbjct: 526 CAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQK-SA 584

Query: 588 PIWEALLAGCRIHG 601
             W +++ G  +HG
Sbjct: 585 ISWTSMMTGYGMHG 598



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 146/508 (28%), Positives = 223/508 (43%), Gaps = 109/508 (21%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           + VH + I +G  P   + N LID Y K   +  A  +F+ +   D+V+   ++A YS S
Sbjct: 285 KEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQS 344

Query: 95  DNVKLAREMFN-----KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
            N + A E+F        PL   D V + A+I  YS     H A+ LFR M      P+ 
Sbjct: 345 GNFEAAFELFKNMRKENIPL---DVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNC 401

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKS----------GTGLFTSVLNALISVYVKCV 199
            T  SVLSA A +     Q  ++H   +K+          G      V NALI +Y KC 
Sbjct: 402 VTIISVLSACASL-GAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 460

Query: 200 SSPFVSSRSLMGAARRVFDEMP--ERDELSWTTMMTGYVK-NDYLDAAREFLDGMSENVG 256
           S           AAR +FD++P  ER+ ++WT M+ G+ +  D  DA + F++ +SE  G
Sbjct: 461 S---------FKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYG 511

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
           VA NA                     +T + ++ ACA+    R+GKQ+HAY+LR     +
Sbjct: 512 VAPNA---------------------YTISCILMACAHLAAIRIGKQIHAYVLRHHRYES 550

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
             +   V N L+ +Y KCG V+ AR +F+ M ++  +SW ++++ Y              
Sbjct: 551 SAYF--VANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGY-------------- 594

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
                              +G G E L +F +MR  GF P D  F   + +C+  G ++ 
Sbjct: 595 -----------------GMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQ 637

Query: 437 GRQLHAQLVHSGYDSSLSAGNAL----------ITMYARCGVVEAANCVFNTMP-NVDSV 485
           G           Y  S+SA   L          I + AR G ++ A      MP    +V
Sbjct: 638 GLS---------YFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAV 688

Query: 486 SWNAMIAALGQHGNGARAIELYEQMLKE 513
            W A+++A   H N    +EL E  L +
Sbjct: 689 VWVALLSACRVHSN----VELAEHALNK 712



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 193/469 (41%), Gaps = 122/469 (26%)

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
           S PF+S RSL                   T ++  Y+     D A   L+ ++ +  V W
Sbjct: 82  SEPFISPRSLG------------------TGVVASYLACGATDYALLVLERVTPSPAVWW 123

Query: 260 NALISGYVHR---------ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
           N LI  ++ +           +ML    + D FT   V+ AC     +R G   H  +  
Sbjct: 124 NLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICC 183

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER---DLVSWNAILSAYVSAGL 367
                  E ++ + NALV +Y +CG + EA  IF+++ +R   D++SWN+I+SA+V    
Sbjct: 184 NGF----ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHV---- 235

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF-KPCD-----YAF 421
                        ++  +WT               L LFS+M L    KP +      + 
Sbjct: 236 -------------KSSNAWT--------------ALDLFSKMTLIVHEKPTNERSDIISI 268

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
              + +C  L A+   +++H   + +G    +  GNALI  YA+CG++E A  VFN M  
Sbjct: 269 VNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEF 328

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI-------------------------- 515
            D VSWNAM+A   Q GN   A EL++ M KE I                          
Sbjct: 329 KDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNL 388

Query: 516 ---------LPDRITFLTVLSACNHAGLVKEG--------RRYFETMHGPYGIPPGEDH- 557
                    LP+ +T ++VLSAC   G   +G        +    T+   +G   GED  
Sbjct: 389 FRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFG---GEDED 445

Query: 558 ---YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI-WEALLAGCRIHGN 602
              Y   ID+  +   F  A+ + D +P +    + W  ++ G   +G+
Sbjct: 446 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGD 494



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 126/274 (45%), Gaps = 21/274 (7%)

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
             ++++Y++ G  D A  + E +     + W ++I    + G  +  + +  +M   G +
Sbjct: 93  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 152

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P  +     + +C  L +   G   H  +  +G++S++   NAL+ MY+RCG +E A+ +
Sbjct: 153 PDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 212

Query: 476 FNTMPNV---DSVSWNAMIAALGQHGNGARAIELYEQM---LKEGILPDR---ITFLTVL 526
           F+ +      D +SWN++++A  +  N   A++L+ +M   + E    +R   I+ + +L
Sbjct: 213 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 272

Query: 527 SACNHAGLVKEGRRYFETMHGPY---GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF 583
            AC     V + +     +HG     G  P        ID   + G    A  V + + F
Sbjct: 273 PACGSLKAVPQTKE----VHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEF 328

Query: 584 KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           K     W A++AG    GN     +AA +LF+ M
Sbjct: 329 KDVVS-WNAMVAGYSQSGN----FEAAFELFKNM 357


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 281/751 (37%), Positives = 417/751 (55%), Gaps = 79/751 (10%)

Query: 48  PREHIINRL-IDIYCKSLK---LVYARTLF-DEIPQPDIVARTTLIAAYSASDNVKLARE 102
           P EH I  L +    K+LK   +++A  +  ++  + +IV   +LI  Y+  D + +AR 
Sbjct: 24  PLEHTIQLLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARI 83

Query: 103 MFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM-RRDDVKPDNFTFTSVLSALAL 161
           +F+   ++ R+ V + A++  Y HN      + LF+ M   D ++P+ + F +++S+ + 
Sbjct: 84  LFDG--MRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSD 141

Query: 162 I--VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDE 219
              V E  QC   H   +KSG      V NALI +Y         S RS +  A  V+ E
Sbjct: 142 SGQVVEGWQC---HGYALKSGLVFHQYVKNALICMY---------SRRSDVKGAMSVWYE 189

Query: 220 MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQ 279
           +P  D  S+  ++ G ++N Y   A E LD M +   + W                    
Sbjct: 190 VPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDEC-IVW-------------------- 228

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            D  TY +    C++    RLG QVH  + RT A    E+   V++A++ +Y KCG    
Sbjct: 229 -DNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGA----EYDSFVSSAIIDMYGKCG---- 279

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
             +I N                         A+ +F  ++ +N++SWT +++  +QNG  
Sbjct: 280 --NILN-------------------------ARKVFNRLQTKNVVSWTAILAAYSQNGCF 312

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
           EE L  F +M ++G  P +Y FA  + SCAG+ AL +G+ LH ++  SG++  +  GNAL
Sbjct: 313 EEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNAL 372

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           I MY++ G +EAA+ VF  M   DS++W+AMI  L  HG G  A+ ++++ML     P  
Sbjct: 373 INMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPHY 432

Query: 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579
           +TF+ VLSAC H G V+EG  Y   +    GI PG +HY   + LLC+AG+  EA++ + 
Sbjct: 433 VTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMK 492

Query: 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639
           S P K     W  LL+ C +H N  LG + AE + Q+ P   GTY+LLSNMYA   RWD 
Sbjct: 493 STPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPGDVGTYILLSNMYAKAKRWDG 552

Query: 640 AARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGY 699
             ++RKLMR+R VKKEPG SWIE+ N +HVF+ +   HPE+  +Y+ +++L+  +R +GY
Sbjct: 553 VVKIRKLMRERNVKKEPGASWIEIRNSIHVFVSEGKTHPESNQIYEKVQELLTMIRPMGY 612

Query: 700 VPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKF 759
           VPD   V HD+E +QK   +S HSEKLA+A+GLMK P GA +RV+KNLR+C DCH+A K 
Sbjct: 613 VPDIAAVFHDVEDEQKREYVSYHSEKLAIAYGLMKTPSGAPIRVIKNLRMCVDCHSAVKL 672

Query: 760 MSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +SKV  R I+VRD  RFH F DG CSC DYW
Sbjct: 673 ISKVTNRMIIVRDANRFHCFGDGGCSCADYW 703



 Score = 47.0 bits (110), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 45  GFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQP----DIVARTTLIAAYSASDNVKLA 100
           G  P E+    L++       L + + L   I +      I+    LI  YS S +++ A
Sbjct: 326 GLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAA 385

Query: 101 REMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA 160
            ++F    +  RD++ ++AMI   SH+  G  A+ +F++M      P   TF  VLSA A
Sbjct: 386 HKVF--LEMICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACA 443


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 272/790 (34%), Positives = 412/790 (52%), Gaps = 79/790 (10%)

Query: 11  TLANRYASQLQLCDPRNPITSSLA--------RSVHAHMISSGFKPREHIINRLIDIYCK 62
           T+A   ++      P +P+ S L         + VH   I  G      + NR++   C 
Sbjct: 3   TIAATSSALKSFSPPTHPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCT 62

Query: 63  SL--KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAM 120
                  YAR LFDEIP+P++                                   +N M
Sbjct: 63  HEYGDFQYARRLFDEIPEPNLF---------------------------------IWNTM 89

Query: 121 ITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSG 180
           I  YS        + L+ +M R  VKPD +TF  +       +  E    Q+H  V+K G
Sbjct: 90  IRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYG-RQLHGHVLKHG 148

Query: 181 TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY 240
                 V  AL+ +Y+ C           +  AR VFD  P+ D ++W  +++ Y K   
Sbjct: 149 LQYNVFVHTALVQMYLLC---------GQLDTARGVFDVCPKADVITWNMIISAYNKVGK 199

Query: 241 LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRL 300
            + +R     M +                       ++     T   V+SAC+     R 
Sbjct: 200 FEESRRLFLVMEDK----------------------QVLPTTVTLVLVLSACSKLKDLRT 237

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           GK+VH+Y+   +     E +L + NA++ +Y  CG+++ A  IF  M  RD++SW  I+S
Sbjct: 238 GKKVHSYVKNCKV----ESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVS 293

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
            + + G ID A++ F+ M E++ +SWT MI G  ++   +E L+LF  M+    KP ++ 
Sbjct: 294 GFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFT 353

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
               +T+CA LGALE G  +   +  +   + L   NALI MY +CG V+ A  +F  M 
Sbjct: 354 MVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS 413

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
             D  +W AMI  L  +G+G +A++++  MLK  ILPD IT++ VLSAC H GLV +GR+
Sbjct: 414 QRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRK 473

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
           YF  M   +GI P   HY   +DLL RAG+  EA +VI+++P K ++ +W ALLAGCR++
Sbjct: 474 YFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVY 533

Query: 601 GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSW 660
              D+     +Q+ +L P +   YVLL N+YA   RW+D   +R++M D+G+KK PGCS 
Sbjct: 534 RESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSL 593

Query: 661 IEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALS 720
           IE++ +VH F+  D +HP+ + +   L+++  +++  GY PD   V  D+  + KE ++ 
Sbjct: 594 IEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVF 653

Query: 721 THSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFR 780
            HSEKLA+AFGL+  P G T+R+ KNLR+C DCHN  K +SKV  RE++VRD  RFHHF+
Sbjct: 654 RHSEKLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFK 713

Query: 781 DGKCSCGDYW 790
            G CSC DYW
Sbjct: 714 HGLCSCKDYW 723


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 280/765 (36%), Positives = 424/765 (55%), Gaps = 99/765 (12%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + D+    TL+  Y+  D    ++ +F++ P   R+ V +NA+ + Y        A+ LF
Sbjct: 189 EGDVFVANTLVVMYAKCDEFLDSKRLFDEIP--ERNVVSWNALFSCYVQXDFCGEAVGLF 246

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
            +M    +KP+ F+ +S+++A   + +  +  + +H  ++K G        NAL+ +Y K
Sbjct: 247 YEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKI-IHGYLIKLGYDWDPFSANALVDMYAK 305

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTG----------------------- 234
                       +  A  VF+++ + D +SW  ++ G                       
Sbjct: 306 VGD---------LADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHS 356

Query: 235 --------------------YVKNDYLDAAREFLDGMSENVGVAWNALISGYVH--RELK 272
                               Y K D L+ AR   + + E   +AWNA+ISGY     +++
Sbjct: 357 SLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDME 416

Query: 273 MLMLRIQL-------DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
            L L +++       ++ T ++++ + A   +  + +QVH        K      + V N
Sbjct: 417 ALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHG----LSVKSGFHSDIYVVN 472

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
           +L+  Y KC  V                               ++A+ +FE     +L+S
Sbjct: 473 SLIDSYGKCSHV-------------------------------EDAERIFEECTIGDLVS 501

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
           +T MI+  AQ G GEE LKLF +M+    KP  +  +  + +CA L A E G+QLH  ++
Sbjct: 502 FTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHIL 561

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIE 505
             G+   + AGN+L+ MYA+CG ++ A   F+ +     VSW+AMI  L QHG+G +A++
Sbjct: 562 KYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQ 621

Query: 506 LYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLL 565
           L+ QMLKEG+ P+ IT ++VL ACNHAGLV E + YFE+M   +G  P ++HYA  IDLL
Sbjct: 622 LFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLL 681

Query: 566 CRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYV 625
            RAGK +EA ++++ +PF+ +A +W ALL   RIH +++LG +AAE LF L P  +GT+V
Sbjct: 682 GRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHV 741

Query: 626 LLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYK 685
           LL+N+YA+ G+W++ A VR+LMRD  VKKEPG SWIEV +KV+ FLV D +H  +Q +Y 
Sbjct: 742 LLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYA 801

Query: 686 YLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLK 745
            L++L   M K GYVP  +  LHD+E  +KE  L  HSEKLAVAFGL+  P GA +RV K
Sbjct: 802 KLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKK 861

Query: 746 NLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           NLR+C DCH AFK++ K+V REI+VRD  RFHHF+DG CSCGDYW
Sbjct: 862 NLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 906



 Score =  225 bits (574), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 177/650 (27%), Positives = 288/650 (44%), Gaps = 118/650 (18%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y+  L  C     +   L   +HAH+  SG      I N LI++Y K     YAR L DE
Sbjct: 59  YSKLLSQCCTTKSLRPGL--QIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDE 116

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
             +PD+V+                                 ++A+I+ Y+ N  G  A+ 
Sbjct: 117 SSEPDLVS---------------------------------WSALISGYAQNGLGGGALM 143

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
            F +M    VK + FTF+SVL A + IV++ +   Q+H  VV SG      V N L+ +Y
Sbjct: 144 AFHEMHLLGVKCNEFTFSSVLKACS-IVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMY 202

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            KC    F+ S       +R+FDE+PER+ +SW  + + YV+ D+            E V
Sbjct: 203 AKC--DEFLDS-------KRLFDEIPERNVVSWNALFSCYVQXDFC----------GEAV 243

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           G+ +  ++SG            I+ +EF+ +S+++AC        GK +H YL++     
Sbjct: 244 GLFYEMVLSG------------IKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDW 291

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA-------------- 361
            P FS    NALV +Y K G + +A  +F ++ + D+VSWNA+++               
Sbjct: 292 DP-FS---ANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELL 347

Query: 362 --------------------YVSAGLID---------EAKSLFEAMRERNLLSWTVMISG 392
                               +VS GL+D         +A+  F  + E++L++W  +ISG
Sbjct: 348 GQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISG 407

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
            +Q     E L LF +M  EG        +  + S AGL  +   RQ+H   V SG+ S 
Sbjct: 408 YSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSD 467

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           +   N+LI  Y +C  VE A  +F      D VS+ +MI A  Q+G G  A++L+ +M  
Sbjct: 468 IYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQD 527

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
             + PDR    ++L+AC +    ++G++        YG           +++  + G   
Sbjct: 528 MELKPDRFVCSSLLNACANLSAFEQGKQ-LHVHILKYGFVLDIFAGNSLVNMYAKCGSID 586

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ--LMPHH 620
           +A      L  +     W A++ G   HG+    +Q   Q+ +  + P+H
Sbjct: 587 DAGRAFSELTERGIVS-WSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNH 635



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 182/373 (48%), Gaps = 70/373 (18%)

Query: 145 VKPDNFTFTSV----LSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVS 200
           +   NFT TSV    L +     +  +  +Q+H  + KSG     S+ N LI++Y KC  
Sbjct: 47  IDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKC-- 104

Query: 201 SPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWN 260
                     G AR++ DE  E D +SW+ +++GY +N                 G+   
Sbjct: 105 -------RXFGYARKLVDESSEPDLVSWSALISGYAQN-----------------GLGGG 140

Query: 261 ALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
           AL++ +     +M +L ++ +EFT++SV+ AC+     R+GKQVH  ++ +      E  
Sbjct: 141 ALMAFH-----EMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVS----GFEGD 191

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           + V N LV +Y KC +  +++ +F+++PER++VSWNA+ S YV                 
Sbjct: 192 VFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYV----------------- 234

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
                         Q  +  E + LF +M L G KP +++ +  + +C GL     G+ +
Sbjct: 235 --------------QXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKII 280

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           H  L+  GYD    + NAL+ MYA+ G +  A  VF  +   D VSWNA+IA    H + 
Sbjct: 281 HGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHH 340

Query: 501 ARAIELYEQMLKE 513
            +A+EL  QM ++
Sbjct: 341 EQALELLGQMKRQ 353



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 135/526 (25%), Positives = 223/526 (42%), Gaps = 121/526 (23%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
           SS  + +H ++I  G+       N L+D+Y K   L  A ++F++I QPDIV+   +IA 
Sbjct: 274 SSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAG 333

Query: 91  -------------------------------------------YSASDNVKLAREMFNKT 107
                                                      YS  D ++ AR  FN  
Sbjct: 334 CVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLL 393

Query: 108 PLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEK 167
           P K  D + +NA+I+ YS       A+ LF +M ++ +  +  T +++L + A + +   
Sbjct: 394 PEK--DLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGL-QVVH 450

Query: 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS 227
            C Q+H   VKSG      V+N+LI  Y KC         S +  A R+F+E    D +S
Sbjct: 451 VCRQVHGLSVKSGFHSDIYVVNSLIDSYGKC---------SHVEDAERIFEECTIGDLVS 501

Query: 228 WTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTS 287
           +T+M+T Y +    + A +                        L+M  + ++ D F  +S
Sbjct: 502 FTSMITAYAQYGQGEEALKLF----------------------LEMQDMELKPDRFVCSS 539

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV--NNALVTLYWKCGKVNEARDIFN 345
           +++ACAN   F  GKQ+H ++L+        F L +   N+LV +Y KCG +++A   F+
Sbjct: 540 LLNACANLSAFEQGKQLHVHILKY------GFVLDIFAGNSLVNMYAKCGSIDDAGRAFS 593

Query: 346 QMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKL 405
           ++ ER +VSW+A                               MI GLAQ+G+G + L+L
Sbjct: 594 ELTERGIVSWSA-------------------------------MIGGLAQHGHGRQALQL 622

Query: 406 FSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH-SGYDSSLSAGNALITMYA 464
           F+QM  EG  P        + +C   G +   +     +    G+         +I +  
Sbjct: 623 FNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLG 682

Query: 465 RCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN---GARAIEL 506
           R G +  A  + N MP   ++  W A++ A   H +   G RA E+
Sbjct: 683 RAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEM 728



 Score =  139 bits (350), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 168/359 (46%), Gaps = 45/359 (12%)

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
           +Y+ ++S C  +   R G Q+HA++ ++     P     + N L+ LY KC     AR +
Sbjct: 58  SYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPS----IRNHLINLYSKCRXFGYARKL 113

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
            ++  E DLV                               SW+ +ISG AQNG G   L
Sbjct: 114 VDESSEPDLV-------------------------------SWSALISGYAQNGLGGGAL 142

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
             F +M L G K  ++ F+  + +C+ +  L  G+Q+H  +V SG++  +   N L+ MY
Sbjct: 143 MAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMY 202

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
           A+C     +  +F+ +P  + VSWNA+ +   Q      A+ L+ +M+  GI P+  +  
Sbjct: 203 AKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLS 262

Query: 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGED----HYARFIDLLCRAGKFSEAKDVID 579
           ++++AC   GL    R   + +HG Y I  G D         +D+  + G  ++A  V +
Sbjct: 263 SMVNACT--GLRDSSRG--KIIHG-YLIKLGYDWDPFSANALVDMYAKVGDLADAISVFE 317

Query: 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWD 638
            +  +P    W A++AGC +H + +  ++   Q+ + +        + S+++ ++G  D
Sbjct: 318 KIK-QPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVD 375



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 90/185 (48%), Gaps = 8/185 (4%)

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473
           F P   +++  ++ C    +L  G Q+HA +  SG     S  N LI +Y++C     A 
Sbjct: 52  FTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYAR 111

Query: 474 CVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533
            + +     D VSW+A+I+   Q+G G  A+  + +M   G+  +  TF +VL AC+   
Sbjct: 112 KLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS--- 168

Query: 534 LVKEGRRYFETMHGPYGIPPGE-DHYA--RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590
           +VK+  R  + +HG   +   E D +     + +  +  +F ++K + D +P + +   W
Sbjct: 169 IVKD-LRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIP-ERNVVSW 226

Query: 591 EALLA 595
            AL +
Sbjct: 227 NALFS 231


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 268/720 (37%), Positives = 406/720 (56%), Gaps = 88/720 (12%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           +I   T +++ Y+   +++ A E+F+   +K R+ V + AMI  ++ +     A   F  
Sbjct: 346 EIYVGTAILSMYTKCGSMEDALEVFD--LVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNK 403

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M    ++P+  TF S+L A +      K+  Q+   ++++G G    V  AL+S+Y KC 
Sbjct: 404 MIESGIEPNRVTFMSILGACS-SPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCG 462

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
           S         +  A RVF+++ +                              +NV VAW
Sbjct: 463 S---------LKDAHRVFEKISK------------------------------QNV-VAW 482

Query: 260 NALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
           NA+I+ YV  E           +L   I+ +  T+TS+++ C +S    LGK VH  ++ 
Sbjct: 483 NAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIM- 541

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
              K   E  L V+NALV+++  CG +  A+++FN MP+RDLVSWN I++ +V       
Sbjct: 542 ---KAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFV------- 591

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
                                   Q+G  +     F  M+  G KP    F G + +CA 
Sbjct: 592 ------------------------QHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACAS 627

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
             AL  GR+LHA +  + +D  +  G  LI+MY +CG +E A+ VF+ +P  +  SW +M
Sbjct: 628 PEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSM 687

Query: 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
           I    QHG G  A+EL+ QM +EG+ PD ITF+  LSAC HAGL++EG  +F++M   + 
Sbjct: 688 ITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMK-EFN 746

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
           I P  +HY   +DL  RAG  +EA + I  +  +P + +W ALL  C++H N++L  +AA
Sbjct: 747 IEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAA 806

Query: 611 EQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVF 670
           ++  +L P+  G +V+LSN+YA  G W + A++RK+M DRGV K+PG SWIEVD KVH F
Sbjct: 807 QKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTF 866

Query: 671 LVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAF 730
             DD  HP+ + ++  LE+L +EMR+LGYVPDT++VLHD+E ++KE AL  HSE+LA+ +
Sbjct: 867 YSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITY 926

Query: 731 GLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           GL+K P    + + KNLR+CGDCH A KF+SK+  R+I+ RD  RFHHF+DG CSCGD+W
Sbjct: 927 GLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 146/543 (26%), Positives = 252/543 (46%), Gaps = 81/543 (14%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           QPDI    TLI  Y+   N   A+++F+   ++ +D   +N ++  Y  +     A +L 
Sbjct: 142 QPDIFMWNTLINMYAKCGNTISAKQIFDD--MREKDVYSWNLLLGGYVQHGLYEEAFKLH 199

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSG--TGLFTSVLNALISVY 195
             M +D VKPD  TF S+L+A A     +K   +++  ++K+G  T LF  V  ALI+++
Sbjct: 200 EQMVQDSVKPDKRTFVSMLNACADARNVDKG-RELYNLILKAGWDTDLF--VGTALINMH 256

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
           +KC           +G A +VFD +P RD ++WT+M+TG  ++     A      M E  
Sbjct: 257 IKCGD---------IGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEE- 306

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                                 +Q D+  + S++ AC +      GK+VHA +     + 
Sbjct: 307 ---------------------GVQPDKVAFVSLLRACNHPEALEQGKKVHARM----KEV 341

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
             +  + V  A++++Y KCG + +A ++F+ +  R++VSW A+++ +   G IDEA   F
Sbjct: 342 GWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFF 401

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
             M E                                G +P    F   + +C+   AL+
Sbjct: 402 NKMIE-------------------------------SGIEPNRVTFMSILGACSSPSALK 430

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            G+Q+   ++ +GY S      AL++MYA+CG ++ A+ VF  +   + V+WNAMI A  
Sbjct: 431 RGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYV 490

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR-YFETMHGPYGIPPG 554
           QH     A+  ++ +LKEGI P+  TF ++L+ C  +  ++ G+  +F  M    G+   
Sbjct: 491 QHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKA--GLESD 548

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
                  + +    G    AK++ + +P K     W  ++AG   HG      Q A   F
Sbjct: 549 LHVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGK----NQVAFDYF 603

Query: 615 QLM 617
           ++M
Sbjct: 604 KMM 606



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/537 (23%), Positives = 253/537 (47%), Gaps = 83/537 (15%)

Query: 111 MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM 170
           ++DT   NA++   S     + A+++   +    ++    T++++L  L +  +      
Sbjct: 72  IKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQ-LCIKFKNLGDGE 130

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           +++  + KSG      + N LI++Y KC ++          +A+++FD+M E+D  SW  
Sbjct: 131 RIYNHIKKSGVQPDIFMWNTLINMYAKCGNTI---------SAKQIFDDMREKDVYSWNL 181

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++ GYV++   + A +  + M ++                       ++ D+ T+ S+++
Sbjct: 182 LLGGYVQHGLYEEAFKLHEQMVQD----------------------SVKPDKRTFVSMLN 219

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           ACA++     G++++  +L    K   +  L V  AL+ ++ KCG + +A  +F+ +P R
Sbjct: 220 ACADARNVDKGRELYNLIL----KAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTR 275

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           DLV+W ++++     G   +A +LF+ M E                              
Sbjct: 276 DLVTWTSMITGLARHGRFKQACNLFQRMEE------------------------------ 305

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
            EG +P   AF   + +C    ALE G+++HA++   G+D+ +  G A+++MY +CG +E
Sbjct: 306 -EGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSME 364

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
            A  VF+ +   + VSW AMIA   QHG    A   + +M++ GI P+R+TF+++L AC+
Sbjct: 365 DALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACS 424

Query: 531 HAGLVKEGRRYFE-TMHGPYGIPPGEDHYAR--FIDLLCRAGKFSEAKDVIDSLPFKPSA 587
               +K G++  +  +   Y    G D   R   + +  + G   +A  V + +  K + 
Sbjct: 425 SPSALKRGQQIQDHIIEAGY----GSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNV 479

Query: 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQ--LMPHHAGTYVLLSNMYAN-----LGRW 637
             W A++     H   D  +   + L +  + P ++ T+  + N+  +     LG+W
Sbjct: 480 VAWNAMITAYVQHEQYDNALATFQALLKEGIKP-NSSTFTSILNVCKSSDSLELGKW 535



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 151/354 (42%), Gaps = 72/354 (20%)

Query: 9   IRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVY 68
           I+  ++ + S L +C   + +   L + VH  ++ +G +   H+ N L+ ++     L+ 
Sbjct: 510 IKPNSSTFTSILNVCKSSDSL--ELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMS 567

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           A+ LF+++P+ D+V+  T+IA +                                  H  
Sbjct: 568 AKNLFNDMPKRDLVSWNTIIAGF--------------------------------VQHGK 595

Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL 188
           N   A + F+ M+   +KPD  TFT +L+A A   E   +  ++H  + ++       V 
Sbjct: 596 N-QVAFDYFKMMQESGIKPDKITFTGLLNACA-SPEALTEGRRLHALITEAAFDCDVLVG 653

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
             LIS+Y KC S         +  A +VF ++P+++  SWT+M+TGY ++     A E  
Sbjct: 654 TGLISMYTKCGS---------IEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELF 704

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
             M +                        ++ D  T+   +SACA++GL   G  +H + 
Sbjct: 705 YQMQQE----------------------GVKPDWITFVGALSACAHAGLIEEG--LHHFQ 740

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
              E    P   +     +V L+ + G +NEA +   +M  E D   W A+L A
Sbjct: 741 SMKEFNIEPR--MEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGA 792



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 131/306 (42%), Gaps = 50/306 (16%)

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG 448
           +++ L++ G   E +++  ++     +     ++  +  C     L +G +++  +  SG
Sbjct: 81  VLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSG 140

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
               +   N LI MYA+CG   +A  +F+ M   D  SWN ++    QHG    A +L+E
Sbjct: 141 VQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHE 200

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH----YARFIDL 564
           QM+++ + PD+ TF+++L+AC  A  V +GR  +  +     +  G D         I++
Sbjct: 201 QMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLI-----LKAGWDTDLFVGTALINM 255

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNI-----------DLGIQA---- 609
             + G   +A  V D+LP +     W +++ G   HG             + G+Q     
Sbjct: 256 HIKCGDIGDATKVFDNLPTRDLVT-WTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVA 314

Query: 610 ----------AEQLFQLMPHHA-------------GTYVLLSNMYANLGRWDDAARVRKL 646
                      E L Q    HA             GT +L  +MY   G  +DA  V  L
Sbjct: 315 FVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAIL--SMYTKCGSMEDALEVFDL 372

Query: 647 MRDRGV 652
           ++ R V
Sbjct: 373 VKGRNV 378


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 293/841 (34%), Positives = 440/841 (52%), Gaps = 133/841 (15%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           + S L+ C  +  +  ++ R VH   + +GF+    + N L+ +Y K   L  +R LF  
Sbjct: 85  FPSVLKACSMKRDL--NMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGG 142

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           I +                                 R+ V +NA+ + Y  +     A+ 
Sbjct: 143 IVE---------------------------------RNVVSWNALFSCYVQSELCGEAVG 169

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LF++M R  + P+ F+ + +L+A A + +E     ++H  ++K G  L     NAL+ +Y
Sbjct: 170 LFKEMVRSGIMPNEFSISIILNACAGL-QEGDLGRKIHGLMLKMGLDLDQFSANALVDMY 228

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            K        +  + GA   VF ++   D +SW  ++ G V +D  D A   LD      
Sbjct: 229 SK--------AGEIEGAVA-VFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLD------ 273

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-- 313
                         E+K    R  +  FT +S + ACA  G   LG+Q+H+ L++ +A  
Sbjct: 274 --------------EMKGSGTRPNM--FTLSSALKACAAMGFKELGRQLHSSLIKMDAHS 317

Query: 314 -------------------------KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
                                       P+  +   NAL++ Y +CG   +A  +F++M 
Sbjct: 318 DLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMF 377

Query: 349 ERDL---------------------------------------VSWNAILSAYVSAGLID 369
             D+                                          N++L  Y     ID
Sbjct: 378 SEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHID 437

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
           EA  +FE     +L+++T MI+  +Q G GEE LKL+ QM+    KP  +  +  + +CA
Sbjct: 438 EASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACA 497

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
            L A E G+QLH   +  G+   + A N+L+ MYA+CG +E A+  F+ +PN   VSW+A
Sbjct: 498 NLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSA 557

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY 549
           MI    QHG+G  A+ L+ QML++G+ P+ IT ++VL ACNHAGLV EG++YFE M   +
Sbjct: 558 MIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMF 617

Query: 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609
           GI P ++HYA  IDLL R+GK +EA ++++S+PF+    +W ALL   RIH NI+LG +A
Sbjct: 618 GIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKA 677

Query: 610 AEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHV 669
           A+ LF L P  +GT+VLL+N+YA+ G W++ A+VRK M+D  VKKEPG SWIE+ +KV+ 
Sbjct: 678 AKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYT 737

Query: 670 FLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVA 729
           F+V D +H  +  +Y  L+QL   + K GY    +  +H+++  +KE  L  HSEKLAVA
Sbjct: 738 FIVGDRSHSRSDEIYAKLDQLGDLLSKAGYSSIVEIDIHNVDKSEKEKLLYHHSEKLAVA 797

Query: 730 FGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
           FGL+  P G  +RV KNLRIC DCH  FKF+ K+V REI+VRD  RFHHF+DG CSCGDY
Sbjct: 798 FGLIATPPGGPIRVKKNLRICVDCHTFFKFVCKIVSREIIVRDINRFHHFKDGSCSCGDY 857

Query: 790 W 790
           W
Sbjct: 858 W 858



 Score =  175 bits (444), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 118/429 (27%), Positives = 202/429 (47%), Gaps = 72/429 (16%)

Query: 170 MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWT 229
           M++H  ++K G     S+ N L+++Y KC            G AR++ DE  E D +SW+
Sbjct: 1   MELHAHLIKFGFSRDPSLRNHLVTLYSKC---------RRFGYARKLVDESSELDVVSWS 51

Query: 230 TMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVI 289
           ++++GYV+N +++ A    +                      +M +L ++ +EFT+ SV+
Sbjct: 52  SLLSGYVQNGFVEEALLVFN----------------------EMCLLGVKCNEFTFPSVL 89

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
            AC+      +G++VH   + T      E    V N LV +Y KCG ++++R +F  + E
Sbjct: 90  KACSMKRDLNMGRKVHGMAVVT----GFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVE 145

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
           R++VSWNA+ S YV + L  EA                               + LF +M
Sbjct: 146 RNVVSWNALFSCYVQSELCGEA-------------------------------VGLFKEM 174

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
              G  P +++ +  + +CAGL   + GR++H  ++  G D    + NAL+ MY++ G +
Sbjct: 175 VRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEI 234

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           E A  VF  + + D VSWNA+IA    H     A+ L ++M   G  P+  T  + L AC
Sbjct: 235 EGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKAC 294

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYAR--FIDLLCRAGKFSEAKDVIDSLPFKPSA 587
              G  + GR+   ++     +    D +A    +D+  +     +A+   DS+P K   
Sbjct: 295 AAMGFKELGRQLHSSL---IKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMP-KKDI 350

Query: 588 PIWEALLAG 596
             W AL++G
Sbjct: 351 IAWNALISG 359



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 164/667 (24%), Positives = 267/667 (40%), Gaps = 168/667 (25%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           +HAH+I  GF     + N L+ +Y K  +  YAR L DE  + D+V+             
Sbjct: 3   LHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVS------------- 49

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
                               ++++++ Y  N     A+ +F +M    VK + FTF SVL
Sbjct: 50  --------------------WSSLLSGYVQNGFVEEALLVFNEMCLLGVKCNEFTFPSVL 89

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
            A ++   +     ++H   V +G      V N L+ +Y KC          L+  +RR+
Sbjct: 90  KACSM-KRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKC---------GLLDDSRRL 139

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLML 276
           F  + ER+ +SW  + + YV+++             E VG+    + SG           
Sbjct: 140 FGGIVERNVVSWNALFSCYVQSELC----------GEAVGLFKEMVRSG----------- 178

Query: 277 RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
            I  +EF+ + +++ACA      LG+++H  +L+       +FS    NALV +Y K G+
Sbjct: 179 -IMPNEFSISIILNACAGLQEGDLGRKIHGLMLKM-GLDLDQFS---ANALVDMYSKAGE 233

Query: 337 VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
           +  A  +F  +   D+VSWNAI                               I+G   +
Sbjct: 234 IEGAVAVFQDIAHPDVVSWNAI-------------------------------IAGCVLH 262

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
              +  L L  +M+  G +P  +  + A+ +CA +G  E GRQLH+ L+     S L A 
Sbjct: 263 DCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAA 322

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
             L+ MY++C +++ A   +++MP  D ++WNA+I+   Q G+   A+ L+ +M  E I 
Sbjct: 323 VGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDID 382

Query: 517 PDRITFLTVLSA--------------------------------------CNHAGLVKEG 538
            ++ T  TVL +                                      CNH   + E 
Sbjct: 383 FNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNH---IDEA 439

Query: 539 RRYFETMHGPYGIPPGED--HYARFIDLLCRAGKFSEAKDV---IDSLPFKPSAPIWEAL 593
            + FE           ED   Y   I    + G   EA  +   +     KP   I  +L
Sbjct: 440 SKIFEE-------RTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSL 492

Query: 594 LAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL--------LSNMYANLGRWDDAARVRK 645
           L  C         + A EQ  QL  H      +        L NMYA  G  +DA R   
Sbjct: 493 LNACA-------NLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFS 545

Query: 646 LMRDRGV 652
            + +RG+
Sbjct: 546 EIPNRGI 552



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 151/313 (48%), Gaps = 41/313 (13%)

Query: 303 QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY 362
           ++HA+L++      P     + N LVTLY KC +   AR + ++  E D+VS        
Sbjct: 2   ELHAHLIKFGFSRDP----SLRNHLVTLYSKCRRFGYARKLVDESSELDVVS-------- 49

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
                                  W+ ++SG  QNG+ EE L +F++M L G K  ++ F 
Sbjct: 50  -----------------------WSSLLSGYVQNGFVEEALLVFNEMCLLGVKCNEFTFP 86

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
             + +C+    L  GR++H   V +G++S     N L+ MYA+CG+++ +  +F  +   
Sbjct: 87  SVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVER 146

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR--R 540
           + VSWNA+ +   Q      A+ L+++M++ GI+P+  +   +L+AC  AGL +EG   R
Sbjct: 147 NVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNAC--AGL-QEGDLGR 203

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
               +    G+   +      +D+  +AG+   A  V   +   P    W A++AGC +H
Sbjct: 204 KIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIA-HPDVVSWNAIIAGCVLH 262

Query: 601 GNIDLGIQAAEQL 613
              DL +   +++
Sbjct: 263 DCNDLALMLLDEM 275



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 114/259 (44%), Gaps = 30/259 (11%)

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           +LHA L+  G+    S  N L+T+Y++C     A  + +    +D VSW+++++   Q+G
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE-DH 557
               A+ ++ +M   G+  +  TF +VL AC+    +  GR+    +HG   +   E D 
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRK----VHGMAVVTGFESDG 117

Query: 558 YA--RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
           +     + +  + G   +++ +   +  + +   W AL + C +   +      A  LF+
Sbjct: 118 FVANTLVVMYAKCGLLDDSRRLFGGI-VERNVVSWNALFS-CYVQSEL---CGEAVGLFK 172

Query: 616 ------LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWI-------- 661
                 +MP+     ++L N  A L   D   ++  LM   G+  +   +          
Sbjct: 173 EMVRSGIMPNEFSISIIL-NACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKA 231

Query: 662 -EVDNKVHVFLVDDTAHPE 679
            E++  V VF   D AHP+
Sbjct: 232 GEIEGAVAVF--QDIAHPD 248


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 280/778 (35%), Positives = 425/778 (54%), Gaps = 90/778 (11%)

Query: 38  HAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNV 97
           H  +  +GF+    I N L+ +Y +   L  A  +FDEI Q  I                
Sbjct: 185 HGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGI---------------- 228

Query: 98  KLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM------RRDDVKPDNFT 151
                          D + +N++++A+  +SN   A++LF  M      +  + + D  +
Sbjct: 229 --------------DDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIIS 274

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             ++L A   + +   Q  ++H   +++GT     V NALI  Y KC          LM 
Sbjct: 275 IVNILPACGSL-KAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKC---------GLME 324

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM-SENVG---VAWNALISGYV 267
            A +VF+ M  +D +SW  M+ GY ++   +AA E    M  EN+    V W A+I+GY 
Sbjct: 325 NAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYS 384

Query: 268 HREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
            R           +M+      +  T  SV+SACA+ G F  G ++HAY L+        
Sbjct: 385 QRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLK-------- 436

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE-- 376
                 N L+TL    G  +E           DL+ +NA++  Y        A+S+F+  
Sbjct: 437 ------NCLLTLDNDFGGEDE-----------DLMVYNALIDMYSKCRSFKAARSIFDDI 479

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE--GFKPCDYAFAGAITSCAGLGAL 434
            + ERN+++WTVMI G AQ G   + LKLF +M  E  G  P  Y  +  + +CA L A+
Sbjct: 480 PLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAI 539

Query: 435 ENGRQLHAQLV-HSGYDSSLS-AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
             G+Q+HA ++ H  Y+SS     N LI MY++CG V+ A  VF++M    ++SW +M+ 
Sbjct: 540 RIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMT 599

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552
             G HG G+ A++++++M K G +PD ITFL VL AC+H G+V +G  YF++M   YG+ 
Sbjct: 600 GYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLT 659

Query: 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
           P  +HYA  IDLL R+G+  +A   +  +P +P+A +W ALL+ CR+H N++L   A  +
Sbjct: 660 PRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNK 719

Query: 613 LFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLV 672
           L ++   + G+Y L+SN+YA  GRW D AR+R LM+  G+KK PGCSW++       F V
Sbjct: 720 LVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFV 779

Query: 673 DDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGL 732
            D +HP +  +Y  LE L+  ++ +GYVP+T F LHD++ ++K   L  HSEKLA+A+GL
Sbjct: 780 GDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGL 839

Query: 733 MKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +    G  +R+ KNLR+CGDCH+AF ++SK+V  EIVVRD  RFHHF++G CSCG YW
Sbjct: 840 LTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 897



 Score =  193 bits (490), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 162/614 (26%), Positives = 275/614 (44%), Gaps = 79/614 (12%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF 73
           + +AS L+ C   N +       +H  +I+SG       +  +      S   +  R+L 
Sbjct: 45  SHFASLLKECKSANTV-----HQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSL- 98

Query: 74  DEIPQPDIVARTTLIAAY---SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNG 130
                      T ++A+Y    A+D   L  E    +P      V++N +I  +      
Sbjct: 99  ----------GTGVVASYLACGATDYALLVLERVTPSP-----AVWWNLLIREHIKQGRL 143

Query: 131 HAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC-MQMHCTVVKSGTGLFTSVLN 189
            +AI +   M R   +PD+FT   VL A   +     +C    H  +  +G      + N
Sbjct: 144 DSAINVSCRMLRAGTRPDHFTLPHVLKACGEL--PSYRCGSAFHGLICCNGFESNVFICN 201

Query: 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER---DELSWTTMMTGYVKNDYLDAARE 246
           AL+++Y +C S         +  A  +FDE+ +R   D +SW ++++ +VK+     A +
Sbjct: 202 ALVAMYSRCGS---------LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALD 252

Query: 247 FLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
               M+         LI   VH +        + D  +  +++ AC +       K+VH 
Sbjct: 253 LFSKMT---------LI---VHEKPT----NERSDIISIVNILPACGSLKAVPQTKEVHG 296

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366
             +R    P     + V NAL+  Y KCG +  A  +FN M  +D+VSWNA+++ Y  +G
Sbjct: 297 NAIRNGTFP----DVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSG 352

Query: 367 LIDEAKSLFEAMRERNL----LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
             + A  LF+ MR+ N+    ++WT +I+G +Q G   E L LF QM   G  P      
Sbjct: 353 NFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTII 412

Query: 423 GAITSCAGLGALENGRQLHAQLVHS----------GYDSSLSAGNALITMYARCGVVEAA 472
             +++CA LGA   G ++HA  + +          G D  L   NALI MY++C   +AA
Sbjct: 413 SVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAA 472

Query: 473 NCVFNTMP--NVDSVSWNAMIAALGQHGNGARAIELYEQMLKE--GILPDRITFLTVLSA 528
             +F+ +P    + V+W  MI    Q+G+   A++L+ +M+ E  G+ P+  T   +L A
Sbjct: 473 RSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMA 532

Query: 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR-FIDLLCRAGKFSEAKDVIDSLPFKPSA 587
           C H   ++ G++    +   +         A   ID+  + G    A+ V DS+  K SA
Sbjct: 533 CAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQK-SA 591

Query: 588 PIWEALLAGCRIHG 601
             W +++ G  +HG
Sbjct: 592 ISWTSMMTGYGMHG 605



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 146/508 (28%), Positives = 223/508 (43%), Gaps = 109/508 (21%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           + VH + I +G  P   + N LID Y K   +  A  +F+ +   D+V+   ++A YS S
Sbjct: 292 KEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQS 351

Query: 95  DNVKLAREMFN-----KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
            N + A E+F        PL   D V + A+I  YS     H A+ LFR M      P+ 
Sbjct: 352 GNFEAAFELFKNMRKENIPL---DVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNC 408

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKS----------GTGLFTSVLNALISVYVKCV 199
            T  SVLSA A +     Q  ++H   +K+          G      V NALI +Y KC 
Sbjct: 409 VTIISVLSACASL-GAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 467

Query: 200 SSPFVSSRSLMGAARRVFDEMP--ERDELSWTTMMTGYVK-NDYLDAAREFLDGMSENVG 256
           S           AAR +FD++P  ER+ ++WT M+ G+ +  D  DA + F++ +SE  G
Sbjct: 468 S---------FKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYG 518

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
           VA NA                     +T + ++ ACA+    R+GKQ+HAY+LR     +
Sbjct: 519 VAPNA---------------------YTISCILMACAHLAAIRIGKQIHAYVLRHHRYES 557

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
             +   V N L+ +Y KCG V+ AR +F+ M ++  +SW ++++ Y              
Sbjct: 558 SAYF--VANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGY-------------- 601

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
                              +G G E L +F +MR  GF P D  F   + +C+  G ++ 
Sbjct: 602 -----------------GMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQ 644

Query: 437 GRQLHAQLVHSGYDSSLSAGNAL----------ITMYARCGVVEAANCVFNTMP-NVDSV 485
           G           Y  S+SA   L          I + AR G ++ A      MP    +V
Sbjct: 645 GLS---------YFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAV 695

Query: 486 SWNAMIAALGQHGNGARAIELYEQMLKE 513
            W A+++A   H N    +EL E  L +
Sbjct: 696 VWVALLSACRVHSN----VELAEHALNK 719



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 193/469 (41%), Gaps = 122/469 (26%)

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
           S PF+S RSL                   T ++  Y+     D A   L+ ++ +  V W
Sbjct: 89  SEPFISPRSLG------------------TGVVASYLACGATDYALLVLERVTPSPAVWW 130

Query: 260 NALISGYVHR---------ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
           N LI  ++ +           +ML    + D FT   V+ AC     +R G   H  +  
Sbjct: 131 NLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICC 190

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER---DLVSWNAILSAYVSAGL 367
                  E ++ + NALV +Y +CG + EA  IF+++ +R   D++SWN+I+SA+V    
Sbjct: 191 NGF----ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHV---- 242

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF-KPCD-----YAF 421
                        ++  +WT               L LFS+M L    KP +      + 
Sbjct: 243 -------------KSSNAWT--------------ALDLFSKMTLIVHEKPTNERSDIISI 275

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
              + +C  L A+   +++H   + +G    +  GNALI  YA+CG++E A  VFN M  
Sbjct: 276 VNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEF 335

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI-------------------------- 515
            D VSWNAM+A   Q GN   A EL++ M KE I                          
Sbjct: 336 KDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNL 395

Query: 516 ---------LPDRITFLTVLSACNHAGLVKEG--------RRYFETMHGPYGIPPGEDH- 557
                    LP+ +T ++VLSAC   G   +G        +    T+   +G   GED  
Sbjct: 396 FRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFG---GEDED 452

Query: 558 ---YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI-WEALLAGCRIHGN 602
              Y   ID+  +   F  A+ + D +P +    + W  ++ G   +G+
Sbjct: 453 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGD 501



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 126/274 (45%), Gaps = 21/274 (7%)

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
             ++++Y++ G  D A  + E +     + W ++I    + G  +  + +  +M   G +
Sbjct: 100 TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 159

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P  +     + +C  L +   G   H  +  +G++S++   NAL+ MY+RCG +E A+ +
Sbjct: 160 PDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 219

Query: 476 FNTMPNV---DSVSWNAMIAALGQHGNGARAIELYEQM---LKEGILPDR---ITFLTVL 526
           F+ +      D +SWN++++A  +  N   A++L+ +M   + E    +R   I+ + +L
Sbjct: 220 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 279

Query: 527 SACNHAGLVKEGRRYFETMHGPY---GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF 583
            AC     V + +     +HG     G  P        ID   + G    A  V + + F
Sbjct: 280 PACGSLKAVPQTKE----VHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEF 335

Query: 584 KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           K     W A++AG    GN     +AA +LF+ M
Sbjct: 336 KDVVS-WNAMVAGYSQSGN----FEAAFELFKNM 364


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 272/720 (37%), Positives = 399/720 (55%), Gaps = 88/720 (12%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           +I   T L++ Y+   +++ A E+FN   +K R+ V + AMI  ++ +     A   F  
Sbjct: 340 EIYVGTALLSMYTKCGSMEDALEVFN--LVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNK 397

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M    ++P+  TF S+L A +      KQ  Q+H  ++K+G      V  AL+S+Y KC 
Sbjct: 398 MIESGIEPNRVTFMSILGACSR-PSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKC- 455

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                   SLM A R VF+ + +                              +NV VAW
Sbjct: 456 -------GSLMDA-RNVFERISK------------------------------QNV-VAW 476

Query: 260 NALISGYVHRE---------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
           NA+I+ YV  E           +L   I+ D  T+TS+++ C +     LGK V + ++R
Sbjct: 477 NAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIR 536

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
                  E  L + NALV+++  CG +  A ++FN MPERDLVSWN I            
Sbjct: 537 AGF----ESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTI------------ 580

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
                              I+G  Q+G  +     F  M+  G KP    F G + +CA 
Sbjct: 581 -------------------IAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACAS 621

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
             AL  GR+LHA +  +  D  +  G  LI+MY +CG ++ A+ VF+ +P  +  SW +M
Sbjct: 622 PEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSM 681

Query: 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
           I    QHG G  A+EL+ QM +EG+ PD ITF+  LSAC HAGL+KEG  +FE+M   + 
Sbjct: 682 ITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMK-DFN 740

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
           I P  +HY   +DL  RAG   EA + I+ +  KP + +W ALL  C++H +++L  + A
Sbjct: 741 IEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVA 800

Query: 611 EQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVF 670
           ++  +L P+  G YV+LSN+YA  G W +  ++RK+M DRGV K+PG SWIEVD +VH+F
Sbjct: 801 QKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIF 860

Query: 671 LVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAF 730
             DD  HP+ + ++  L +L +EM+KLGYVPDT++VLHD+E  +KE+AL  HSE+LA+A+
Sbjct: 861 CSDDKTHPQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDVEDSEKEHALCHHSERLAIAY 920

Query: 731 GLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           GL+K P    + + KNLR+CGDCH A K +SK+  R+I+ RD  RFHHF+DG CSCGD+W
Sbjct: 921 GLLKTPPLTPIVISKNLRVCGDCHTATKLISKITKRQIIARDSNRFHHFKDGVCSCGDFW 980



 Score =  209 bits (531), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 155/587 (26%), Positives = 265/587 (45%), Gaps = 78/587 (13%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQP----DIVARTTLIA 89
           A  +H  M+  G KP ++    +++    +  +     LF  I       D+   T LI 
Sbjct: 189 AFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALIN 248

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
            +     V  A ++FN  P   RD + + +MIT  + +     A  LF+ M  + V+PD 
Sbjct: 249 MHIKCGGVDDALKVFNNLP--RRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDK 306

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
             F S+L A     E  +Q  ++H  + + G      V  AL+S+Y KC S         
Sbjct: 307 VAFVSLLKACNH-PEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGS--------- 356

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           M  A  VF+ +  R+ +SWT M+ G+ ++  ++ A  F + M E          SG    
Sbjct: 357 MEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIE----------SG---- 402

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
                   I+ +  T+ S++ AC+     + G+Q+H  +++            V  AL++
Sbjct: 403 --------IEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDR----VRTALLS 450

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           +Y KCG + +AR++F ++ ++++V+WNA+++AYV     D A + F+A+ +         
Sbjct: 451 MYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLK--------- 501

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
                                 EG KP    F   +  C    ALE G+ + + ++ +G+
Sbjct: 502 ----------------------EGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGF 539

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
           +S L   NAL++M+  CG + +A  +FN MP  D VSWN +IA   QHG    A + ++ 
Sbjct: 540 ESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKM 599

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
           M + G+ PD+ITF  +L+AC     + EGRR    +     +          I +  + G
Sbjct: 600 MQESGVKPDQITFTGLLNACASPEALTEGRR-LHALITEAALDCDVVVGTGLISMYTKCG 658

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
              +A  V  +LP K +   W +++ G   HG    G +A E   Q+
Sbjct: 659 SIDDAHLVFHNLP-KKNVYSWTSMITGYAQHGR---GKEALELFCQM 701



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 141/530 (26%), Positives = 243/530 (45%), Gaps = 83/530 (15%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           QPDI     LI+ Y+   N   A+++F++ P K  D   +N ++  Y  +     A  L 
Sbjct: 136 QPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDK--DVYSWNLLLGGYVQHRRYEEAFRLH 193

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSG--TGLFTSVLNALISVY 195
             M +D VKPD +TF  +L+A A     +K   ++   ++ +G  T LF  V  ALI+++
Sbjct: 194 EQMVQDGVKPDKYTFVYMLNACADAKNVDKGG-ELFSLILNAGWDTDLF--VGTALINMH 250

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
           +KC           +  A +VF+ +P RD ++WT+M+TG  ++     A      M E  
Sbjct: 251 IKCGG---------VDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEE- 300

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL----LRT 311
                                 +Q D+  + S++ AC +      GK+VHA +    L T
Sbjct: 301 ---------------------GVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDT 339

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
           E        + V  AL+++Y KCG + +A ++FN +  R++VSW A+++ +         
Sbjct: 340 E--------IYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGF--------- 382

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
                                 AQ+G  EE    F++M   G +P    F   + +C+  
Sbjct: 383 ----------------------AQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRP 420

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
            AL+ GRQ+H +++ +GY +      AL++MYA+CG +  A  VF  +   + V+WNAMI
Sbjct: 421 SALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMI 480

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
            A  QH     A+  ++ +LKEGI PD  TF ++L+ C     ++ G ++ +++    G 
Sbjct: 481 TAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELG-KWVQSLIIRAGF 539

Query: 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
                     + +    G    A ++ + +P +     W  ++AG   HG
Sbjct: 540 ESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVS-WNTIIAGFVQHG 588



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/463 (25%), Positives = 221/463 (47%), Gaps = 76/463 (16%)

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           N LIS+Y KC ++          +A+++FDEMP++D  SW  ++ GYV++   + A    
Sbjct: 143 NMLISMYAKCGNT---------NSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLH 193

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
           + M ++                       ++ D++T+  +++ACA++     G ++ + +
Sbjct: 194 EQMVQD----------------------GVKPDKYTFVYMLNACADAKNVDKGGELFSLI 231

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
           L        +  L V  AL+ ++ KCG V++A  +FN +P RDL++W ++          
Sbjct: 232 LNAGW----DTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSM---------- 277

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
                                I+GLA++   ++   LF  M  EG +P   AF   + +C
Sbjct: 278 ---------------------ITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKAC 316

Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
               ALE G+++HA++   G D+ +  G AL++MY +CG +E A  VFN +   + VSW 
Sbjct: 317 NHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWT 376

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP 548
           AMIA   QHG    A   + +M++ GI P+R+TF+++L AC+    +K+GR+  + +   
Sbjct: 377 AMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKA 436

Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
             I       A  + +  + G   +A++V + +  K +   W A++     H   D  + 
Sbjct: 437 GYITDDRVRTA-LLSMYAKCGSLMDARNVFERIS-KQNVVAWNAMITAYVQHEKYDNAVA 494

Query: 609 AAEQLFQ--LMPHHAGTYVLLSNMYAN-----LGRWDDAARVR 644
             + L +  + P  + T+  + N+  +     LG+W  +  +R
Sbjct: 495 TFQALLKEGIKP-DSSTFTSILNVCKSPDALELGKWVQSLIIR 536



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 165/327 (50%), Gaps = 37/327 (11%)

Query: 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
           IQ+   TY+S++  C        G+++H ++  ++ +P     + + N L+++Y KCG  
Sbjct: 100 IQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQP----DIFMWNMLISMYAKCGNT 155

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNG 397
           N A+ IF++MP++D+ SWN +L  YV                               Q+ 
Sbjct: 156 NSAKQIFDEMPDKDVYSWNLLLGGYV-------------------------------QHR 184

Query: 398 YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN 457
             EE  +L  QM  +G KP  Y F   + +CA    ++ G +L + ++++G+D+ L  G 
Sbjct: 185 RYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGT 244

Query: 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
           ALI M+ +CG V+ A  VFN +P  D ++W +MI  L +H    +A  L++ M +EG+ P
Sbjct: 245 ALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQP 304

Query: 518 DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577
           D++ F+++L ACNH   +++G+R    M    G+          + +  + G   +A +V
Sbjct: 305 DKVAFVSLLKACNHPEALEQGKRVHARMK-EVGLDTEIYVGTALLSMYTKCGSMEDALEV 363

Query: 578 IDSLPFKPSAPIWEALLAGCRIHGNID 604
            + +  +     W A++AG   HG ++
Sbjct: 364 FNLVKGRNVVS-WTAMIAGFAQHGRME 389



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 150/354 (42%), Gaps = 72/354 (20%)

Query: 9   IRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVY 68
           I+  ++ + S L +C  ++P    L + V + +I +GF+   HI N L+ ++     L+ 
Sbjct: 504 IKPDSSTFTSILNVC--KSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMS 561

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           A  LF+++P+ D+V+  T+IA +                                  H  
Sbjct: 562 AMNLFNDMPERDLVSWNTIIAGF--------------------------------VQHGE 589

Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL 188
           N   A + F+ M+   VKPD  TFT +L+A A   E   +  ++H  + ++       V 
Sbjct: 590 N-QFAFDYFKMMQESGVKPDQITFTGLLNACA-SPEALTEGRRLHALITEAALDCDVVVG 647

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
             LIS+Y KC S         +  A  VF  +P+++  SWT+M+TGY ++     A E  
Sbjct: 648 TGLISMYTKCGS---------IDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELF 698

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
             M +                        ++ D  T+   +SACA++GL + G      +
Sbjct: 699 CQMQQE----------------------GVKPDWITFVGALSACAHAGLIKEGLHHFESM 736

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
                +P  E        +V L+ + G ++EA +  N+M  + D   W A+L A
Sbjct: 737 KDFNIEPRMEHY----GCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGA 786


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 272/715 (38%), Positives = 415/715 (58%), Gaps = 44/715 (6%)

Query: 88  IAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147
           IA  + + N++ AR  F   PL  R T  YNA++  Y  N    AA+ LFR M   D+  
Sbjct: 24  IAHLARAGNIEGARAAFEAMPL--RTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA- 80

Query: 148 DNFTFTSVLSALALIVEEEKQCMQMHCTVVKS-----GTGLFTSVLNALISVYVKCVSSP 202
              ++ +++S L+L     +Q +      + S         FTS+L      YV+     
Sbjct: 81  ---SYNALISGLSL----RRQTLPDAAAALASIPFPPSVVSFTSLLRG----YVR----- 124

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL 262
                 L+  A R+F +MPER+ +S+T ++ G +    ++ AR   D M +   VAW A+
Sbjct: 125 ----HGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAM 180

Query: 263 ISGYVHRELKMLMLRIQLDEF------TYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
           +SGY     ++   R   DE       ++T++IS  A +G   L +++   +        
Sbjct: 181 LSGYCQAG-RITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVM-------- 231

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
           PE +     A++  Y + G V +A ++FN MPE  + + NA++  +   G++D AK++FE
Sbjct: 232 PERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFE 291

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
            MRER+  +W+ MI    QN +  E L  F +M   G +P   +    +T CA L  L+ 
Sbjct: 292 KMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDY 351

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           GR++HA ++   +D  + A +ALITMY +CG ++ A  VF+T    D V WN+MI    Q
Sbjct: 352 GREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQ 411

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
           HG G +A+ ++  M   G+ PD IT++  L+AC++ G VKEGR  F +M     I PG +
Sbjct: 412 HGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAE 471

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           HY+  +DLL R+G   EA D+I ++P +P A IW AL+  CR+H N ++   AA++L +L
Sbjct: 472 HYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLEL 531

Query: 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT- 675
            P +AG YVLLS++Y ++GRW+DA+++RK +  R + K PGCSWIE D +VH+F   D  
Sbjct: 532 EPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVL 591

Query: 676 AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKL 735
           AHPE  A+ + LE+L   + + GY  D  FVLHD++ +QK ++L  HSE+ AVA+GL+K+
Sbjct: 592 AHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKI 651

Query: 736 PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           P G  +RV+KNLR+CGDCH+A K ++K+  REIV+RD  RFHHF+DG CSC DYW
Sbjct: 652 PEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIVLRDANRFHHFKDGFCSCRDYW 706



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 114/439 (25%), Positives = 204/439 (46%), Gaps = 89/439 (20%)

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           AR LFDE+P  D+VA T +++ Y  +  +  AR +F++ P   R+ V + AMI+ Y+ N 
Sbjct: 162 ARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMP--KRNVVSWTAMISGYAQNG 219

Query: 129 NGHAAIELFRDM-RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSV 187
             + A +LF  M  R++V     ++T++L               +    V+    LF   
Sbjct: 220 EVNLARKLFEVMPERNEV-----SWTAMLVGY------------IQAGHVEDAAELF--- 259

Query: 188 LNALISVYVKCVSSPFV--SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245
            NA+    V   ++  V    R ++ AA+ VF++M ERD+ +W+ M+  Y +N++L    
Sbjct: 260 -NAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFL---- 314

Query: 246 EFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
             ++ +S    + W  +   Y                 +  S+++ CA   +   G++VH
Sbjct: 315 --MEALSTFREMLWRGVRPNYP----------------SVISILTVCAALAVLDYGREVH 356

Query: 306 AYLLRTEAKPTPEFSLPV--NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV 363
           A +LR        F + V   +AL+T+Y KCG +++A+ +F+    +D+V WN++++ Y 
Sbjct: 357 AAMLRC------SFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYA 410

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
             GL                               GE+ L +F  MRL G  P    + G
Sbjct: 411 QHGL-------------------------------GEQALGIFHDMRLAGMSPDGITYIG 439

Query: 424 AITSCAGLGALENGRQL-HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-N 481
           A+T+C+  G ++ GR++ ++  V+S         + ++ +  R G+VE A  +   MP  
Sbjct: 440 ALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVE 499

Query: 482 VDSVSWNAMIAALGQHGNG 500
            D+V W A++ A   H N 
Sbjct: 500 PDAVIWGALMGACRMHRNA 518



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 157/347 (45%), Gaps = 69/347 (19%)

Query: 48  PREHIIN--RLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFN 105
           P+ ++++   +I  Y ++ ++  AR LF+ +P+ + V+ T ++  Y  + +V+ A E+FN
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFN 260

Query: 106 KTP-----------------------------LKMRDTVFYNAMITAYSHNSNGHAAIEL 136
             P                             ++ RD   ++AMI AY  N     A+  
Sbjct: 261 AMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALST 320

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           FR+M    V+P+  +  S+L+  A +   +    ++H  +++    +    ++ALI++Y+
Sbjct: 321 FREMLWRGVRPNYPSVISILTVCAALAVLDYG-REVHAAMLRCSFDMDVFAVSALITMYI 379

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           KC +         +  A+RVF     +D + W +M+TGY ++                 G
Sbjct: 380 KCGN---------LDKAKRVFHTFEPKDIVMWNSMITGYAQH-----------------G 413

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV-HAYLLRTEAKP 315
           +   AL  G  H    M +  +  D  TY   ++AC+ +G  + G+++ ++  + +  +P
Sbjct: 414 LGEQAL--GIFH---DMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRP 468

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
             E      + +V L  + G V EA D+   MP E D V W A++ A
Sbjct: 469 GAEHY----SCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGA 511


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 274/741 (36%), Positives = 417/741 (56%), Gaps = 61/741 (8%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
           N LI  Y +  ++  AR +FDE+   +I++  +++A Y  +   + A+ MF+K  +  R+
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDK--MSERN 159

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL---ALIVEEEKQCM 170
           T+ +N +++ Y +N   + A E+F  M   +V     ++T+++       +I E E    
Sbjct: 160 TISWNGLVSGYINNGMINEAREVFDRMPERNV----VSWTAMVRGYVKEGMISEAETLFW 215

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           QM    V S T +   +L                     +  A R+FD MPE+D ++ T 
Sbjct: 216 QMPEKNVVSWTVMLGGLLQ-----------------EGRIDEACRLFDMMPEKDVVTRTN 258

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           M+ GY +   L  AR   D M     V+W  +I+GYV  +        Q+D         
Sbjct: 259 MIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQ--------QVD--------- 301

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
                            + R   +  PE +     A++  Y  CG+++EA ++FN MP +
Sbjct: 302 -----------------IARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIK 344

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
            +V+ NA++  +   G + +A+ +F+ MRE++  +W+ MI    + G   + L+LF  M+
Sbjct: 345 SVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQ 404

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
            EG +P   +    ++ CAGL  L++GR++HAQLV S +D  +   + L++MY +CG + 
Sbjct: 405 REGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLA 464

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
            A  VF+     D V WN++I    QHG G  A+ ++  M   GI+PD +TF+ VLSAC+
Sbjct: 465 KAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACS 524

Query: 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590
           + G VK+G   F +M   Y +    +HYA  +DLL RAGK +EA D+I+ +P +  A IW
Sbjct: 525 YTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIW 584

Query: 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650
            ALL  CR H  +DL   AA++L  L P +AG ++LLSN+YA+ GRWDD A +R+ MRDR
Sbjct: 585 GALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDR 644

Query: 651 GVKKEPGCSWIEVDNKVHVFL-VDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHD 709
            V K PGCSWI V+ KVH F   D + HPE   + + LE L   +R+ GY PD  FVLHD
Sbjct: 645 RVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHD 704

Query: 710 MESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIV 769
           ++ ++K  +L  HSEKLAVA+GL+K+P G  +RV+KNLR+CGDCH A K ++KV GREI+
Sbjct: 705 VDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREII 764

Query: 770 VRDGKRFHHFRDGKCSCGDYW 790
           +RD  RFHHF+DG CSC DYW
Sbjct: 765 LRDANRFHHFKDGSCSCRDYW 785



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 163/378 (43%), Gaps = 100/378 (26%)

Query: 48  PREHIINR--LIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAR---- 101
           P + ++ R  +I  YC+  +LV AR LFDE+P+ ++V+ TT+I  Y  +  V +AR    
Sbjct: 249 PEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFE 308

Query: 102 ---------------------------EMFNKTPLKM----------------------- 111
                                      E+FN  P+K                        
Sbjct: 309 VMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQV 368

Query: 112 ------RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEE 165
                 +D   ++AMI  Y        A+ELFR M+R+ ++P+  +  SVLS  A +   
Sbjct: 369 FDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANL 428

Query: 166 EKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDE 225
           +    ++H  +V+S   L   V + L+S+Y+KC +         +  A++VFD    +D 
Sbjct: 429 D-HGREIHAQLVRSQFDLDVYVASVLLSMYIKCGN---------LAKAKQVFDRFAVKDV 478

Query: 226 LSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFT 284
           + W +++TGY ++   ++A R F D                       M    I  D+ T
Sbjct: 479 VMWNSIITGYAQHGLGVEALRVFHD-----------------------MHFSGIMPDDVT 515

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           +  V+SAC+ +G  + G ++   +   E K   E  +     +V L  + GK+NEA D+ 
Sbjct: 516 FVGVLSACSYTGNVKKGLEIFNSM---ETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLI 572

Query: 345 NQMP-ERDLVSWNAILSA 361
            +MP E D + W A+L A
Sbjct: 573 EKMPMEADAIIWGALLGA 590



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 33/125 (26%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R +HA ++ S F    ++ + L+ +Y K   L  A+ +FD     D+            
Sbjct: 431 GREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDV------------ 478

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                                V +N++IT Y+ +  G  A+ +F DM    + PD+ TF 
Sbjct: 479 ---------------------VMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFV 517

Query: 154 SVLSA 158
            VLSA
Sbjct: 518 GVLSA 522


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 274/741 (36%), Positives = 417/741 (56%), Gaps = 61/741 (8%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
           N LI  Y +  ++  AR +FDE+   +I++  +++A Y  +   + A+ MF+K  +  R+
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDK--MSERN 159

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL---ALIVEEEKQCM 170
           T+ +N +++ Y +N   + A E+F  M   +V     ++T+++       +I E E    
Sbjct: 160 TISWNGLVSGYINNGMINEAREVFDRMPERNV----VSWTAMVRGYVKEGMISEAETLFW 215

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           QM    V S T +   +L                     +  A R+FD MPE+D ++ T 
Sbjct: 216 QMPEKNVVSWTVMLGGLLQ-----------------EGRIDEACRLFDMMPEKDVVTRTN 258

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           M+ GY +   L  AR   D M     V+W  +I+GYV  +        Q+D         
Sbjct: 259 MIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQ--------QVD--------- 301

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
                            + R   +  PE +     A++  Y  CG+++EA ++FN MP +
Sbjct: 302 -----------------IARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIK 344

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
            +V+ NA++  +   G + +A+ +F+ MRE++  +W+ MI    + G   + L+LF  M+
Sbjct: 345 SVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQ 404

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
            EG +P   +    ++ CAGL  L++GR++HAQLV S +D  +   + L++MY +CG + 
Sbjct: 405 REGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLA 464

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
            A  VF+     D V WN++I    QHG G  A+ ++  M   GI+PD +TF+ VLSAC+
Sbjct: 465 KAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACS 524

Query: 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590
           + G VK+G   F +M   Y +    +HYA  +DLL RAGK +EA D+I+ +P +  A IW
Sbjct: 525 YTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIW 584

Query: 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650
            ALL  CR H  +DL   AA++L  L P +AG ++LLSN+YA+ GRWDD A +R+ MRDR
Sbjct: 585 GALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDR 644

Query: 651 GVKKEPGCSWIEVDNKVHVFL-VDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHD 709
            V K PGCSWI V+ KVH F   D + HPE   + + LE L   +R+ GY PD  FVLHD
Sbjct: 645 RVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHD 704

Query: 710 MESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIV 769
           ++ ++K  +L  HSEKLAVA+GL+K+P G  +RV+KNLR+CGDCH A K ++KV GREI+
Sbjct: 705 VDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREII 764

Query: 770 VRDGKRFHHFRDGKCSCGDYW 790
           +RD  RFHHF+DG CSC DYW
Sbjct: 765 LRDANRFHHFKDGSCSCRDYW 785



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 163/378 (43%), Gaps = 100/378 (26%)

Query: 48  PREHIINR--LIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAR---- 101
           P + ++ R  +I  YC+  +LV AR LFDE+P+ ++V+ TT+I  Y  +  V +AR    
Sbjct: 249 PEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFE 308

Query: 102 ---------------------------EMFNKTPLKM----------------------- 111
                                      E+FN  P+K                        
Sbjct: 309 VMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQV 368

Query: 112 ------RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEE 165
                 +D   ++AMI  Y        A+ELFR M+R+ ++P+  +  SVLS  A +   
Sbjct: 369 FDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANL 428

Query: 166 EKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDE 225
           +    ++H  +V+S   L   V + L+S+Y+KC +         +  A++VFD    +D 
Sbjct: 429 D-HGREIHAQLVRSQFDLDVYVASVLLSMYIKCGN---------LAKAKQVFDRFAVKDV 478

Query: 226 LSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFT 284
           + W +++TGY ++   ++A R F D                       M    I  D+ T
Sbjct: 479 VMWNSIITGYAQHGLGVEALRVFHD-----------------------MHFSGIMPDDVT 515

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           +  V+SAC+ +G  + G ++   +   E K   E  +     +V L  + GK+NEA D+ 
Sbjct: 516 FVGVLSACSYTGNVKKGLEIFNSM---ETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLI 572

Query: 345 NQMP-ERDLVSWNAILSA 361
            +MP E D + W A+L A
Sbjct: 573 EKMPMEADAIIWGALLGA 590



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 33/125 (26%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R +HA ++ S F    ++ + L+ +Y K   L  A+ +FD     D+            
Sbjct: 431 GREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDV------------ 478

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                                V +N++IT Y+ +  G  A+ +F DM    + PD+ TF 
Sbjct: 479 ---------------------VMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFV 517

Query: 154 SVLSA 158
            VLSA
Sbjct: 518 GVLSA 522


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 285/836 (34%), Positives = 444/836 (53%), Gaps = 105/836 (12%)

Query: 26  RNPITSSLARSVHAH----MISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDI 81
           RN +T+  A   H H    +I +GF P  +  N L+  + +   L  AR LFDE+P  +I
Sbjct: 73  RNLVTTLTAPKPHLHVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNI 132

Query: 82  VARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMR 141
            +  T+I  Y  S N+  AR +F+   +  R  V +  +I  Y+ N+    A  LF +M 
Sbjct: 133 FSTNTMIMGYIKSGNLSEARTLFDS--MFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMG 190

Query: 142 RDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSS 201
           R  + PD+ +  ++LS      +   +  Q+H  V+K G      V N+L+  Y K    
Sbjct: 191 RHGIDPDHVSLATLLSGFTEF-DSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCK---- 245

Query: 202 PFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNA 261
               +RSL G A ++F+++PERD +++  ++TGY K  +   A      M E        
Sbjct: 246 ----TRSL-GLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQE-------- 292

Query: 262 LISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR----------- 310
              GY            +  EFT+ ++++A         G+QVH ++++           
Sbjct: 293 --VGY------------RPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVAN 338

Query: 311 ------------TEAKP----TPEFSLPVNNALVTLYWKCGKVNEARDIFNQM------- 347
                        EA       PE      N LVT Y   G+V E+ ++F ++       
Sbjct: 339 ALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDR 398

Query: 348 ---PERDLVSW-----------------------------NAILSAYVSAGLIDEAKSLF 375
              P   L+S                              N+++  Y   G   EA  +F
Sbjct: 399 RNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIF 458

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
             +  ++ + WT MIS   Q G  E+GLKLF +M+          +A  + +CA L +L 
Sbjct: 459 SDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLT 518

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            G+QLH+ ++ SGY S++ +G+AL+ MYA+CG ++ A  +F  MP  +SVSWNA+I+A  
Sbjct: 519 LGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYA 578

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
           Q+G+G   + L+E+M++ G+ PD ++ L++L AC+H GLV+EG +YF++M   Y + P +
Sbjct: 579 QNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKK 638

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
           +HYA  ID+LCR G+F EA+ ++  +PF+P   +W ++L  C IH N +L  +AA QLF 
Sbjct: 639 EHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQLFN 698

Query: 616 L-MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDD 674
           + +   A  YV +SN+YA  G WD+  +V+K MR+RGVKK P  SW+E+ +K HVF  +D
Sbjct: 699 MKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKTHVFTAND 758

Query: 675 TAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMK 734
             HP+ + + K L++L  +M K GY PD+   LH+++ + K  +L  HSE++A+AF L+ 
Sbjct: 759 KTHPQMREIMKKLDELEEKMVKKGYKPDSSCALHNVDEEVKVESLKYHSERIAIAFALIS 818

Query: 735 LPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            P G+ + V+KNLR C DCH A K +SK+V REI VRD  RFHHFRDG C+C DYW
Sbjct: 819 TPEGSPILVMKNLRACTDCHAAIKVISKIVRREITVRDSSRFHHFRDGFCTCRDYW 874



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 133/563 (23%), Positives = 234/563 (41%), Gaps = 101/563 (17%)

Query: 130 GHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLN 189
           G    EL   +  + +KP      + L+A        K  + +  +++K+G    T   N
Sbjct: 53  GSKQYELTLSLMNNIIKPCTRNLVTTLTA-------PKPHLHVDASIIKTGFNPNTYRSN 105

Query: 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD 249
            L+  +++         R  +  AR++FDEMP ++  S  TM+ GY+K+  L  AR   D
Sbjct: 106 FLVKSFLQ---------RGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFD 156

Query: 250 GMSENVGVAWNALISGYVH----RELKMLMLR-----IQLDEFTYTSVISACANSGLFRL 300
            M +   V W  LI GY      RE   L +      I  D  +  +++S          
Sbjct: 157 SMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNE 216

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
            +QVH+++++     T    L V+N+L+  Y K   +  A  +FN +PERD V++NA+L+
Sbjct: 217 VRQVHSHVIKLGYDST----LVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLT 272

Query: 361 AYVSAGLIDEAKSLFEAMRE----------------------------------RNLLSW 386
            Y   G   EA +LF  M+E                                  +    W
Sbjct: 273 GYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVW 332

Query: 387 TVMISGLAQNGYGE-----EGLKLFSQM-------------------------------R 410
            V ++    + Y +     E  KLF +M                               +
Sbjct: 333 NVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQ 392

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
             GF   ++ FA  ++  A    L+ GRQ+H+Q + +   S +  GN+L+ MYA+CG   
Sbjct: 393 FTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFG 452

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
            AN +F+ +    SV W AMI++  Q G     ++L+ +M +  I  D  T+ +++ AC 
Sbjct: 453 EANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACA 512

Query: 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590
               +  G++    + G  G        +  +D+  + G   +A  +   +P + S   W
Sbjct: 513 SLASLTLGKQLHSHIIGS-GYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVS-W 570

Query: 591 EALLAGCRIHGNIDLGIQAAEQL 613
            AL++    +G+ D  ++  E++
Sbjct: 571 NALISAYAQNGDGDCTLRLFEEM 593


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 288/786 (36%), Positives = 425/786 (54%), Gaps = 117/786 (14%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+     L+A Y     +  AR +F++   + R+ V +N +++AY  N     AI++F +
Sbjct: 41  DVFVANALVAMYGGFGFMDDARRVFDEAGSE-RNAVSWNGLMSAYVKNDQCGDAIQVFGE 99

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M    ++P  F F+ V++A       +    Q+H  VV+ G        NAL+ +YVK  
Sbjct: 100 MVWSGIQPTEFGFSCVVNACTGSRNIDAG-RQVHAMVVRMGYEKDVFTANALVDMYVK-- 156

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                     +  A  +F++MP+ D                                V+W
Sbjct: 157 -------MGRVDIASVIFEKMPDSDV-------------------------------VSW 178

Query: 260 NALISGYV-----HRELKMLMLR----IQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
           NALISG V     HR +++L+      +  + F  +S++ ACA +G F LG+Q+H ++++
Sbjct: 179 NALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIK 238

Query: 311 TEAKPTPEFS---------------------------LPVNNALVTLYWKCGKVNEARDI 343
             A                                  L + NAL++     G+ +EA  I
Sbjct: 239 ANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSI 298

Query: 344 FNQMPERDL--------------VSWNA----------------ILSAYVSAGLID---- 369
           F  + +  L               S  A                I  A+V  GLID    
Sbjct: 299 FYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWK 358

Query: 370 -----EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
                +A  +FE     ++++ T MI+ L+Q  +GE  +KLF +M  +G +P  +  +  
Sbjct: 359 CSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSL 418

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           + +CA L A E G+Q+HA L+   + S   AGNAL+  YA+CG +E A   F+++P    
Sbjct: 419 LNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGV 478

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
           VSW+AMI  L QHG+G RA+EL+ +M+ EGI P+ IT  +VL ACNHAGLV E +RYF +
Sbjct: 479 VSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNS 538

Query: 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
           M   +GI   E+HY+  IDLL RAGK  +A ++++S+PF+ +A +W ALL   R+H + +
Sbjct: 539 MKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPE 598

Query: 605 LGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVD 664
           LG  AAE+LF L P  +GT+VLL+N YA+ G W++ A+VRKLM+D  +KKEP  SW+EV 
Sbjct: 599 LGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVK 658

Query: 665 NKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSE 724
           +KVH F+V D +HP  + +Y  L++L   M K GY+P+    LHD++  +KE  LS HSE
Sbjct: 659 DKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKELLLSHHSE 718

Query: 725 KLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKC 784
           +LAVAF L+  P GA +RV KNLRIC DCH AFKF+S +V REI++RD  RFHHFRDG C
Sbjct: 719 RLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRFHHFRDGTC 778

Query: 785 SCGDYW 790
           SCGDYW
Sbjct: 779 SCGDYW 784



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/390 (29%), Positives = 174/390 (44%), Gaps = 71/390 (18%)

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           MR + V  + F    VL      V + +   Q+H   + +G G    V NAL+++Y    
Sbjct: 1   MRAEGVCCNEFALPVVLKC----VPDAQLGAQVHAMAMATGFGSDVFVANALVAMY---- 52

Query: 200 SSPFVSSRSLMGAARRVFDEM-PERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
                     M  ARRVFDE   ER+ +SW  +M+ YVKND    A +    M       
Sbjct: 53  -----GGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM------V 101

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
           W+                 IQ  EF ++ V++AC  S     G+QVHA ++R       E
Sbjct: 102 WSG----------------IQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRM----GYE 141

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
             +   NALV +Y K G+V+ A  IF +MP+ D+VSWNA                     
Sbjct: 142 KDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNA--------------------- 180

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
                     +ISG   NG+    ++L  QM+  G  P  +  +  + +CAG GA + GR
Sbjct: 181 ----------LISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGR 230

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           Q+H  ++ +  DS    G  L+ MYA+   ++ A  VF+ M + D + WNA+I+     G
Sbjct: 231 QIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGG 290

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSA 528
               A  ++  + KEG+  +R T   VL +
Sbjct: 291 RHDEAFSIFYGLRKEGLGVNRTTLAAVLKS 320



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 137/333 (41%), Gaps = 69/333 (20%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
            +S  R VHA     GF    H++N LID Y K   L  A  +F+E    DI+A T++I 
Sbjct: 326 AASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMIT 385

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
           A S  D                                 +G  AI+LF +M R  ++PD 
Sbjct: 386 ALSQCD---------------------------------HGEGAIKLFMEMLRKGLEPDP 412

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           F  +S+L+A A +   E Q  Q+H  ++K          NAL+  Y KC S         
Sbjct: 413 FVLSSLLNACASLSAYE-QGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGS--------- 462

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +  A   F  +PER  +SW+ M+ G  ++ +   A E                       
Sbjct: 463 IEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFG-------------------- 502

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
             +M+   I  +  T TSV+ AC ++GL    K+   Y    +     + +    + ++ 
Sbjct: 503 --RMVDEGINPNHITMTSVLCACNHAGLVDEAKR---YFNSMKEMFGIDRTEEHYSCMID 557

Query: 330 LYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
           L  + GK+++A ++ N MP + +   W A+L A
Sbjct: 558 LLGRAGKLDDAMELVNSMPFQANASVWGALLGA 590



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 6/206 (2%)

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
           MR EG    ++A    +  C     L  G Q+HA  + +G+ S +   NAL+ MY   G 
Sbjct: 1   MRAEGVCCNEFALP-VVLKCVPDAQL--GAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57

Query: 469 VEAANCVFNTMPNV-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
           ++ A  VF+   +  ++VSWN +++A  ++     AI+++ +M+  GI P    F  V++
Sbjct: 58  MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 117

Query: 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSA 587
           AC  +  +  GR+    M    G           +D+  + G+   A  + + +P     
Sbjct: 118 ACTGSRNIDAGRQ-VHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMP-DSDV 175

Query: 588 PIWEALLAGCRIHGNIDLGIQAAEQL 613
             W AL++GC ++G+    I+   Q+
Sbjct: 176 VSWNALISGCVLNGHDHRAIELLLQM 201


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 288/786 (36%), Positives = 425/786 (54%), Gaps = 117/786 (14%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+     L+A Y     +  AR +F++   + R+ V +N +++AY  N     AI++F +
Sbjct: 134 DVFVANALVAMYGGFGFMDDARRVFDEAGSE-RNAVSWNGLMSAYVKNDQCGDAIQVFGE 192

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M    ++P  F F+ V++A       +    Q+H  VV+ G        NAL+ +YVK  
Sbjct: 193 MVWSGIQPTEFGFSCVVNACTGSRNIDAG-RQVHAMVVRMGYEKDVFTANALVDMYVK-- 249

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                     +  A  +F++MP+ D                                V+W
Sbjct: 250 -------MGRVDIASVIFEKMPDSDV-------------------------------VSW 271

Query: 260 NALISGYV-----HRELKMLMLR----IQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
           NALISG V     HR +++L+      +  + F  +S++ ACA +G F LG+Q+H ++++
Sbjct: 272 NALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIK 331

Query: 311 TEAKPTPEFS---------------------------LPVNNALVTLYWKCGKVNEARDI 343
             A                                  L + NAL++     G+ +EA  I
Sbjct: 332 ANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSI 391

Query: 344 FNQMPERDL--------------VSWNA----------------ILSAYVSAGLID---- 369
           F  + +  L               S  A                I  A+V  GLID    
Sbjct: 392 FYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWK 451

Query: 370 -----EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
                +A  +FE     ++++ T MI+ L+Q  +GE  +KLF +M  +G +P  +  +  
Sbjct: 452 CSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSL 511

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           + +CA L A E G+Q+HA L+   + S   AGNAL+  YA+CG +E A   F+++P    
Sbjct: 512 LNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGV 571

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
           VSW+AMI  L QHG+G RA+EL+ +M+ EGI P+ IT  +VL ACNHAGLV E +RYF +
Sbjct: 572 VSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNS 631

Query: 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
           M   +GI   E+HY+  IDLL RAGK  +A ++++S+PF+ +A +W ALL   R+H + +
Sbjct: 632 MKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPE 691

Query: 605 LGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVD 664
           LG  AAE+LF L P  +GT+VLL+N YA+ G W++ A+VRKLM+D  +KKEP  SW+EV 
Sbjct: 692 LGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVK 751

Query: 665 NKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSE 724
           +KVH F+V D +HP  + +Y  L++L   M K GY+P+    LHD++  +KE  LS HSE
Sbjct: 752 DKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKELLLSHHSE 811

Query: 725 KLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKC 784
           +LAVAF L+  P GA +RV KNLRIC DCH AFKF+S +V REI++RD  RFHHFRDG C
Sbjct: 812 RLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRFHHFRDGTC 871

Query: 785 SCGDYW 790
           SCGDYW
Sbjct: 872 SCGDYW 877



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 150/527 (28%), Positives = 227/527 (43%), Gaps = 115/527 (21%)

Query: 3   MKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCK 62
           M++A  I     RYA+   L    +         +HA+++ SGF     + N LI  Y K
Sbjct: 1   MRSAGTISQQLTRYAAAQALLPGAH---------LHANLLKSGFLAS--LRNHLISFYSK 49

Query: 63  SLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
             +   AR +FDEIP P  V+ ++L                                 +T
Sbjct: 50  CRRPCCARRVFDEIPDPCHVSWSSL---------------------------------VT 76

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTG 182
           AYS+N    +AI+ F  MR + V  + F    VL      V + +   Q+H   + +G G
Sbjct: 77  AYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC----VPDAQLGAQVHAMAMATGFG 132

Query: 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEM-PERDELSWTTMMTGYVKNDYL 241
               V NAL+++Y              M  ARRVFDE   ER+ +SW  +M+ YVKND  
Sbjct: 133 SDVFVANALVAMY---------GGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQC 183

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
             A +    M       W+                 IQ  EF ++ V++AC  S     G
Sbjct: 184 GDAIQVFGEM------VWSG----------------IQPTEFGFSCVVNACTGSRNIDAG 221

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
           +QVHA ++R       E  +   NALV +Y K G+V+ A  IF +MP+ D+VSWNA    
Sbjct: 222 RQVHAMVVRM----GYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNA---- 273

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
                                      +ISG   NG+    ++L  QM+  G  P  +  
Sbjct: 274 ---------------------------LISGCVLNGHDHRAIELLLQMKSSGLVPNVFML 306

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
           +  + +CAG GA + GRQ+H  ++ +  DS    G  L+ MYA+   ++ A  VF+ M +
Sbjct: 307 SSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSH 366

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
            D + WNA+I+     G    A  ++  + KEG+  +R T   VL +
Sbjct: 367 RDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKS 413



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 127/439 (28%), Positives = 201/439 (45%), Gaps = 82/439 (18%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
            +H  ++KSG     S+ N LIS Y KC              ARRVFDE+P+   +SW++
Sbjct: 25  HLHANLLKSG--FLASLRNHLISFYSKCRRPC---------CARRVFDEIPDPCHVSWSS 73

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++T Y  N    +A +   GM    GV  N                     EF    V+ 
Sbjct: 74  LVTAYSNNGLPRSAIQAFHGMRAE-GVCCN---------------------EFALPVVLK 111

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM-PE 349
              ++   +LG QVHA  + T         + V NALV +Y   G +++AR +F++   E
Sbjct: 112 CVPDA---QLGAQVHAMAMATGFGS----DVFVANALVAMYGGFGFMDDARRVFDEAGSE 164

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
           R+ VSWN ++SAYV                               +N    + +++F +M
Sbjct: 165 RNAVSWNGLMSAYV-------------------------------KNDQCGDAIQVFGEM 193

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
              G +P ++ F+  + +C G   ++ GRQ+HA +V  GY+  +   NAL+ MY + G V
Sbjct: 194 VWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRV 253

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           + A+ +F  MP+ D VSWNA+I+    +G+  RAIEL  QM   G++P+     ++L AC
Sbjct: 254 DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKAC 313

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDH----YARFIDLLCRAGKFSEAKDVIDSLPFKP 585
             AG    GR+    +HG + I    D         +D+  +     +A  V D +  + 
Sbjct: 314 AGAGAFDLGRQ----IHG-FMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHR- 367

Query: 586 SAPIWEALLAGCRIHGNID 604
              +W AL++GC   G  D
Sbjct: 368 DLILWNALISGCSHGGRHD 386



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 140/314 (44%), Gaps = 43/314 (13%)

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           G  +HA LL++       F   + N L++ Y KC +   AR +F+++P+   VSW+++++
Sbjct: 23  GAHLHANLLKSG------FLASLRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVT 76

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
           AY                               + NG     ++ F  MR EG    ++A
Sbjct: 77  AY-------------------------------SNNGLPRSAIQAFHGMRAEGVCCNEFA 105

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
               +  C     L  G Q+HA  + +G+ S +   NAL+ MY   G ++ A  VF+   
Sbjct: 106 LP-VVLKCVPDAQL--GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAG 162

Query: 481 NV-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
           +  ++VSWN +++A  ++     AI+++ +M+  GI P    F  V++AC  +  +  GR
Sbjct: 163 SERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGR 222

Query: 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI 599
           +    M    G           +D+  + G+   A  + + +P       W AL++GC +
Sbjct: 223 Q-VHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMP-DSDVVSWNALISGCVL 280

Query: 600 HGNIDLGIQAAEQL 613
           +G+    I+   Q+
Sbjct: 281 NGHDHRAIELLLQM 294



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 137/333 (41%), Gaps = 69/333 (20%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
            +S  R VHA     GF    H++N LID Y K   L  A  +F+E    DI+A T++I 
Sbjct: 419 AASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMIT 478

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
           A S  D                                 +G  AI+LF +M R  ++PD 
Sbjct: 479 ALSQCD---------------------------------HGEGAIKLFMEMLRKGLEPDP 505

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           F  +S+L+A A +   E Q  Q+H  ++K          NAL+  Y KC S         
Sbjct: 506 FVLSSLLNACASLSAYE-QGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGS--------- 555

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +  A   F  +PER  +SW+ M+ G  ++ +   A E                       
Sbjct: 556 IEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFG-------------------- 595

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
             +M+   I  +  T TSV+ AC ++GL    K+   Y    +     + +    + ++ 
Sbjct: 596 --RMVDEGINPNHITMTSVLCACNHAGLVDEAKR---YFNSMKEMFGIDRTEEHYSCMID 650

Query: 330 LYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
           L  + GK+++A ++ N MP + +   W A+L A
Sbjct: 651 LLGRAGKLDDAMELVNSMPFQANASVWGALLGA 683



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 103/260 (39%), Gaps = 34/260 (13%)

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           +T  A   AL  G  LHA L+ SG+ +SL   N LI+ Y++C     A  VF+ +P+   
Sbjct: 11  LTRYAAAQALLPGAHLHANLLKSGFLASLR--NHLISFYSKCRRPCCARRVFDEIPDPCH 68

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKE------- 537
           VSW++++ A   +G    AI+ +  M  EG+  +      VL     A L  +       
Sbjct: 69  VSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAQLGAQVHAMAMA 128

Query: 538 ---GRRYF-----ETMHGPYGI----------PPGEDHYARFIDLLCRAGKFSEAKDVID 579
              G   F       M+G +G              E +   +  L+    K  +  D I 
Sbjct: 129 TGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQ 188

Query: 580 SL------PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL-MPHHAGTYVLLSNMYA 632
                     +P+   +  ++  C    NID G Q    + ++       T   L +MY 
Sbjct: 189 VFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYV 248

Query: 633 NLGRWDDAARVRKLMRDRGV 652
            +GR D A+ + + M D  V
Sbjct: 249 KMGRVDIASVIFEKMPDSDV 268


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 285/763 (37%), Positives = 425/763 (55%), Gaps = 74/763 (9%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            +S+HA  + S      ++ N  +++Y K   L YAR  FD   +P++ +   ++ AY+ 
Sbjct: 27  GKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPNVFSYNVIVKAYAK 86

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
              + +AR++F++ P    DTV YN +I+ Y+      AA+ LF+ MR    + D FT +
Sbjct: 87  DSKIHIARQLFDENP--QPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFTLS 144

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
            +++A    V+  KQ   +HC  V  G   ++SV NA ++ Y         S   L+  A
Sbjct: 145 GLIAACCDRVDLIKQ---LHCFAVSGGFDSYSSVNNAFVTYY---------SKGGLLREA 192

Query: 214 RRVFDEMPE-RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
             VF  M   RDE+SW +M+  Y    + + A+                     +++E  
Sbjct: 193 VSVFYGMDGLRDEVSWNSMIVAY--GQHKEGAKALA------------------LYKE-- 230

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           M+    ++D FT  SV++A  +      G+Q H  L++            V + L+  Y 
Sbjct: 231 MIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSH----VGSGLIDFYS 286

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           KCG     RD                       G+ D  K +F+ +   +L+ W  MISG
Sbjct: 287 KCG----GRD-----------------------GMSDSEK-VFQEILSPDLVLWNTMISG 318

Query: 393 LAQNG-YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
            + N  + EE +K F QM+  G +P D +F    ++C+ L +   G+Q+H   + S   S
Sbjct: 319 YSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPS 378

Query: 452 S-LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
           + +S  NALI++Y + G +  A  VF+ MP +++VS+N MI    QHG+G  A+ LY++M
Sbjct: 379 NRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRM 438

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
           L  GI P+ ITF+ +LSAC H G V EG++YF TM   + I P  +HY+  IDLL RAGK
Sbjct: 439 LDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHYSCMIDLLGRAGK 498

Query: 571 FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630
             EA+  ID++P+KP +  W ALL  CR H N+ L  +AA++L  + P  A  YV+L+NM
Sbjct: 499 LEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAAKELMVMQPLAATPYVMLANM 558

Query: 631 YANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQL 690
           YA+ G+W++ A VRK MR + ++K+PGCSWIEV  K HVF+ +D +HP  + V +YLE++
Sbjct: 559 YADAGKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEM 618

Query: 691 VLEMRKLGYVPDTKFVL---HDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNL 747
           + +M+K+GYV D K+ +    +    ++E  L  HSEKLAVAFGLM    G  + V+KNL
Sbjct: 619 MKKMKKVGYVMDKKWAMVKEDEAGEGEEEMRLGHHSEKLAVAFGLMSTRDGEEIVVVKNL 678

Query: 748 RICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           RICGDCHNA KFMS V GREI+VRD  RFH F+DGKCSCGDYW
Sbjct: 679 RICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 154/316 (48%), Gaps = 19/316 (6%)

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           ++ + A   LF  GK +HA  +++    +   S    N  V LY KCG ++ AR  F+  
Sbjct: 15  LLKSVAERDLF-TGKSLHALYVKSIVASSTYLS----NHFVNLYSKCGCLSYARAAFDST 69

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
            E ++ S+N I+ AY     I  A+ LF+   + + +S+  +ISG A        + LF 
Sbjct: 70  EEPNVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFK 129

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467
           +MR  GF+   +  +G I +C     L   +QLH   V  G+DS  S  NA +T Y++ G
Sbjct: 130 RMRELGFEVDGFTLSGLIAACCDRVDLI--KQLHCFAVSGGFDSYSSVNNAFVTYYSKGG 187

Query: 468 VVEAANCVFNTMPNV-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           ++  A  VF  M  + D VSWN+MI A GQH  GA+A+ LY++M+ +G   D  T  +VL
Sbjct: 188 LLREAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVL 247

Query: 527 SACNHAGLVKEGRRYFETMHGPY---GIPPGEDHYARFIDLLCRAG---KFSEAKDVIDS 580
           +A      +  GR++    HG     G        +  ID   + G     S+++ V   
Sbjct: 248 NALTSLDHLIGGRQF----HGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQE 303

Query: 581 LPFKPSAPIWEALLAG 596
           +   P   +W  +++G
Sbjct: 304 I-LSPDLVLWNTMISG 318


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 274/712 (38%), Positives = 398/712 (55%), Gaps = 70/712 (9%)

Query: 80   DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
            D+    +L+  YS       ARE+FN   +K  D + +N+MI++ + +S    ++ LF D
Sbjct: 938  DVSVANSLVNMYSKMGCAYFAREVFND--MKHLDLISWNSMISSCAQSSLEEESVNLFID 995

Query: 140  MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
            +  + +KPD+FT  SVL A + +++      Q+H   +K+G    + V   LI VY K  
Sbjct: 996  LLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKS- 1054

Query: 200  SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                      M  A  +F    + D   W  MM GY+  +    A E             
Sbjct: 1055 --------GKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELF----------- 1095

Query: 260  NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                   +H+  +      + D+ T  +   AC    L   GKQ+HA+ +    K   + 
Sbjct: 1096 -----SLIHKSGE------KSDQITLATAAKACGCLVLLDQGKQIHAHAI----KAGFDS 1140

Query: 320  SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
             L VN+ ++ +Y KCG +  A  +FN                Y+SA              
Sbjct: 1141 DLHVNSGILDMYIKCGDMVNAGIVFN----------------YISA-------------- 1170

Query: 380  ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
              + ++WT MISG   NG  ++ L+++ +MR     P +Y FA  I + + + ALE GRQ
Sbjct: 1171 -PDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQ 1229

Query: 440  LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHG 498
            LHA ++     S    G +L+ MYA+CG +E A  +F  M NV +++ WNAM+  L QHG
Sbjct: 1230 LHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKM-NVRNIALWNAMLVGLAQHG 1288

Query: 499  NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
            N   A+ L++ M   GI PDR++F+ +LSAC+HAGL  E   Y  +M   YGI P  +HY
Sbjct: 1289 NAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHY 1348

Query: 559  ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
            +  +D L RAG   EA  VI+++PFK SA I  ALL  CRI G+++ G + A +LF L P
Sbjct: 1349 SCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEP 1408

Query: 619  HHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHP 678
              +  YVLLSN+YA   RWDD    RK+M+ + VKK+PG SWI+V N +H+F+VDD +HP
Sbjct: 1409 FDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHP 1468

Query: 679  EAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGG 738
            +A  +Y  +E+++  +R+ GYVPDT+FVL D+E ++KE +L  HSEKLA+A+GL+  P  
Sbjct: 1469 QADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPAS 1528

Query: 739  ATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             T+RV+KNLR+CGDCHNA K++SKV  REIV+RD  RFHHFRDG CSCGDYW
Sbjct: 1529 TTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 1580



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 177/715 (24%), Positives = 273/715 (38%), Gaps = 174/715 (24%)

Query: 33   LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
            L +  HA ++ SG      + N L+ +Y K   L  AR +FD  P+ D+V    ++ AY+
Sbjct: 639  LGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYA 698

Query: 93   ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
            AS +                            S++ N    + LFR +R         T 
Sbjct: 699  ASVD----------------------------SNDGNAQEGLHLFRLLRASLGSTTRMTL 730

Query: 153  TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
              VL  L L          +H   +K G      V  AL+++Y KC           M  
Sbjct: 731  APVLK-LCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKC---------GRMRD 780

Query: 213  ARRVFDEMPERDELSWTTMMTGYVK----NDYLDAAREF---------------LDGMSE 253
            AR +FD M ERD + W  M+ GYV+     +      EF               L+G+SE
Sbjct: 781  ARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSE 840

Query: 254  -------------------------NVGV-AWNALIS---------GYVHRELKMLMLRI 278
                                     N  V  WN  +S         G +   + M  L I
Sbjct: 841  VNWDEGKWLADQVQAYAAKLSLSDDNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNI 900

Query: 279  QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
              D  T   V++A A +    LGKQVH   +    K   +  + V N+LV +Y K G   
Sbjct: 901  DYDAVTLLVVLAAVAGTDDLELGKQVHGIAV----KSGLDSDVSVANSLVNMYSKMGCAY 956

Query: 339  EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGY 398
             AR++FN M   DL+SWN++                               IS  AQ+  
Sbjct: 957  FAREVFNDMKHLDLISWNSM-------------------------------ISSCAQSSL 985

Query: 399  GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL-GALENGRQLHAQLVHSGYDSSLSAGN 457
             EE + LF  +  EG KP  +  A  + +C+ L   L   RQ+H   + +G  +      
Sbjct: 986  EEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVAT 1045

Query: 458  ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
             LI +Y++ G +E A  +F    ++D   WNAM+       +G +A+EL+  + K G   
Sbjct: 1046 TLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKS 1105

Query: 518  DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH----YARFIDLLCRAGKFSE 573
            D+IT  T   AC    L+ +G++    +H  + I  G D      +  +D+  + G    
Sbjct: 1106 DQITLATAAKACGCLVLLDQGKQ----IHA-HAIKAGFDSDLHVNSGILDMYIKCGDMVN 1160

Query: 574  AKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ--LMPH------------ 619
            A  V + +   P    W ++++GC  +GN D  ++   ++ Q  +MP             
Sbjct: 1161 AGIVFNYIS-APDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASS 1219

Query: 620  -----------HAGTYVL-----------LSNMYANLGRWDDAARVRKLMRDRGV 652
                       HA    L           L +MYA  G  +DA R+ K M  R +
Sbjct: 1220 CVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNI 1274



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 157/639 (24%), Positives = 267/639 (41%), Gaps = 131/639 (20%)

Query: 34   ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            A  VH + I  G +    +   L++IY K  ++  AR LFD + + D+V    ++  Y  
Sbjct: 746  AEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQ 805

Query: 94   SDNVKLAREMFNK---------------------------------------TPLKMRDT 114
                K A ++F++                                         L + D 
Sbjct: 806  LGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKLSLSDD 865

Query: 115  ---VF-YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM 170
               VF +N  ++      +   AIE F +M   ++  D  T   VL+A+A   ++ +   
Sbjct: 866  NPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVA-GTDDLELGK 924

Query: 171  QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
            Q+H   VKSG     SV N+L+++Y K   + F         AR VF++M   D +SW +
Sbjct: 925  QVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYF---------AREVFNDMKHLDLISWNS 975

Query: 231  MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
            M++          A+  L+  S N       L    +H  LK        D FT  SV+ 
Sbjct: 976  MISS--------CAQSSLEEESVN-------LFIDLLHEGLKP-------DHFTLASVLR 1013

Query: 291  ACAN--SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
            AC++   GL  + +Q+H + L+T       F   V   L+ +Y K GK            
Sbjct: 1014 ACSSLIDGL-NISRQIHVHALKT-GNIADSF---VATTLIDVYSKSGK------------ 1056

Query: 349  ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQ 408
                               ++EA+ LF+   + +L  W  M+ G      G++ L+LFS 
Sbjct: 1057 -------------------MEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSL 1097

Query: 409  MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
            +   G K      A A  +C  L  L+ G+Q+HA  + +G+DS L   + ++ MY +CG 
Sbjct: 1098 IHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGD 1157

Query: 469  VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
            +  A  VFN +   D V+W +MI+    +GN  +A+ +Y +M +  ++PD  TF T++ A
Sbjct: 1158 MVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKA 1217

Query: 529  CNHAGLVKEGRRY------FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582
             +    +++GR+        + +  P+            +D+  + G   +A  +   + 
Sbjct: 1218 SSCVTALEQGRQLHANVIKLDCVSDPFV-------GTSLVDMYAKCGNIEDAYRLFKKMN 1270

Query: 583  FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621
             +  A +W A+L G   HGN     + A  LF+ M  H 
Sbjct: 1271 VRNIA-LWNAMLVGLAQHGN----AEEAVNLFKSMKSHG 1304



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 113/470 (24%), Positives = 192/470 (40%), Gaps = 102/470 (21%)

Query: 32   SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
            +++R +H H + +G      +   LID+Y KS K+  A  LF                  
Sbjct: 1023 NISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQ----------------- 1065

Query: 92   SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                         NK  L   D   +NAM+  Y   ++G  A+ELF  + +   K D  T
Sbjct: 1066 -------------NKDDL---DLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQIT 1109

Query: 152  FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
              +   A   +V  + Q  Q+H   +K+G      V + ++ +Y+KC           M 
Sbjct: 1110 LATAAKACGCLVLLD-QGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGD---------MV 1159

Query: 212  AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
             A  VF+ +   D+++WT+M++G V N   D A                       HR  
Sbjct: 1160 NAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIY-------------------HR-- 1198

Query: 272  KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
             M   R+  DE+T+ ++I A +       G+Q+HA +++ +    P     V  +LV +Y
Sbjct: 1199 -MRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDP----FVGTSLVDMY 1253

Query: 332  WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
             KCG + +A  +F +M  R++  WNA+L      G  +EA +LF++M+            
Sbjct: 1254 AKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSH---------- 1303

Query: 392  GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ-LHAQLVHSGYD 450
                                 G +P   +F G +++C+  G      + LH+     G +
Sbjct: 1304 ---------------------GIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIE 1342

Query: 451  SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN-AMIAALGQHGN 499
              +   + L+    R G+V+ A+ V  TMP   S S N A++ A    G+
Sbjct: 1343 PEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGD 1392


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 289/768 (37%), Positives = 418/768 (54%), Gaps = 90/768 (11%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSL--KLVYARTLFDEIPQPDIVARTTLIAAYS 92
           + +H+ +I +G    +  +++LI+    S    L YA  LF+ I QP+            
Sbjct: 49  KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPN------------ 96

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                   +N MI   S +S+   AI+ +  M    V+P+++TF
Sbjct: 97  ---------------------QFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTF 135

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
             +L + A  V   ++  Q+H  V+K G      V  +LI++Y +            +G 
Sbjct: 136 PFLLKSCAK-VGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQ---------NGELGY 185

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE-- 270
           A  VF +   RD +S+T ++TGY     LD AR   + +     V+WNA+I+GY      
Sbjct: 186 AELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRF 245

Query: 271 -------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
                   +M    +  +E T  +V+SACA SG   LG  V +++           +L +
Sbjct: 246 EEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGS----NLRL 301

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
            NAL+ +Y KCG                                +D+A+ LFE + E+++
Sbjct: 302 VNALIDMYSKCGD-------------------------------LDKARDLFEGICEKDI 330

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
           +SW VMI G +     +E L LF +M+    +P D  F   + +CA LGAL+ G+ +HA 
Sbjct: 331 ISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAY 390

Query: 444 LVHSGYD-SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
           +       ++ S   +LI MYA+CG +EAA  VF  M      SWNAMI+ L  HG+   
Sbjct: 391 IDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANM 450

Query: 503 AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562
           A+EL+ QM  EG  PD ITF+ VLSAC+HAGLV+ GR+ F +M   Y I P   HY   I
Sbjct: 451 ALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMI 510

Query: 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622
           DLL RAG F EA+ ++ ++  KP   IW +LL  CR+HGN++LG  AA+ LF+L P + G
Sbjct: 511 DLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPG 570

Query: 623 TYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQA 682
            YVLLSN+YA  GRWDD AR+R  + D+G+KK PGCS IEVD+ VH FLV D  H ++Q 
Sbjct: 571 AYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQD 630

Query: 683 VYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVR 742
           +YK L+++   + K G+VPDT  VL+DM+ + KE +LS HSEKLA+AFGL+      T+R
Sbjct: 631 IYKMLDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIR 690

Query: 743 VLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           ++KNLR+CG+CH+A K +SK+  REI+ RD  RFHHF+DG CSC DYW
Sbjct: 691 IVKNLRVCGNCHSAIKLISKIFNREIIARDRNRFHHFKDGSCSCMDYW 738



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 140/325 (43%), Gaps = 47/325 (14%)

Query: 314 KPT--PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA------ 365
           +PT  P + L  N+  +TL   C      + I +Q+ +  L +    LS  +        
Sbjct: 20  QPTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPF 79

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425
           G +  A  LFE++ + N   W  MI G + +      +  + +M L G +P  Y F   +
Sbjct: 80  GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLL 139

Query: 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT------- 478
            SCA +GA + G+Q+H  ++  G +S      +LI MYA+ G +  A  VF+        
Sbjct: 140 KSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAV 199

Query: 479 ------------------------MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
                                   +P  D+VSWNAMIA   Q G    A+  +++M +  
Sbjct: 200 SFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRAN 259

Query: 515 ILPDRITFLTVLSACNHAGLVKEG---RRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571
           + P+  T +TVLSAC  +G ++ G   R + E     +G+          ID+  + G  
Sbjct: 260 VAPNESTMVTVLSACAQSGSLELGNWVRSWIED----HGLGSNLRLVNALIDMYSKCGDL 315

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAG 596
            +A+D+ + +  K     W  ++ G
Sbjct: 316 DKARDLFEGICEKDIIS-WNVMIGG 339



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 168/389 (43%), Gaps = 75/389 (19%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L   V + +   G      ++N LID+Y K   L  AR LF+ I + DI++   +I  Y 
Sbjct: 282 LGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGY- 340

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                           SH ++   A+ LFR M++ +V+P++ TF
Sbjct: 341 --------------------------------SHMNSYKEALALFRKMQQSNVEPNDVTF 368

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLF-TSVLNALISVYVKCVSSPFVSSRSLMG 211
            S+L A A +   +     +H  + K   GL  TS+  +LI +Y KC +         + 
Sbjct: 369 VSILPACAYLGALDLG-KWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGN---------IE 418

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
           AA++VF  M  +   SW  M++G   + + + A E    M +           G+     
Sbjct: 419 AAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDE----------GF----- 463

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                  + D+ T+  V+SAC+++GL  LG+Q  + ++  +   +P+  L     ++ L 
Sbjct: 464 -------EPDDITFVGVLSACSHAGLVELGRQCFSSMVE-DYDISPK--LQHYGCMIDLL 513

Query: 332 WKCGKVNEARDIFNQMPER-DLVSWNAILSAYVSAGLID----EAKSLFEAMRERNLLSW 386
            + G  +EA  +   M  + D   W ++L A    G ++     AK LFE +   N  ++
Sbjct: 514 GRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFE-LEPENPGAY 572

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
            ++ +  A  G  ++  ++ +++  +G K
Sbjct: 573 VLLSNIYATAGRWDDVARIRTKLNDKGMK 601


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 282/726 (38%), Positives = 412/726 (56%), Gaps = 58/726 (7%)

Query: 103 MFNKTPLKMRDTVF-YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALAL 161
           +FN T   +   VF + +M+  YSH  +    + +F  M+   V+PD F +        L
Sbjct: 56  LFNST---LNPNVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYP------IL 106

Query: 162 IVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM----------- 210
           I       +  H  V+K G G    V NA+I +Y +    P   +R +            
Sbjct: 107 IKSAGNGGIGFHAHVLKLGHGSDAFVRNAVIDMYARL--GPIGHARKVFDEIPDYERKVA 164

Query: 211 ---------------GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
                          G A+ +FD MPER+ ++WT M+TGY K   L+AAR + D M E  
Sbjct: 165 DWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERS 224

Query: 256 GVAWNALISGYVHRELKMLMLR---------IQLDEFTYTSVISACANSGLFRLGKQVHA 306
            V+WNA++SGY    L   +LR         I+ DE T+ +VISAC++ G       + A
Sbjct: 225 VVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRG----DPCLAA 280

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE-RDLVSWNAILSAYVSA 365
            L+RT  +   + +  V  AL+ +Y KCG +  AR IF+++   R+ V+WNA++SAY   
Sbjct: 281 SLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRV 340

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RLEGFKPCDYAFAGA 424
           G +D A+ LF  M  RN+++W  MI+G AQNG     ++LF +M   +   P +      
Sbjct: 341 GNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSV 400

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           I++C  LGALE G  +   L  +    S+S  NA+I MY+RCG +E A  VF  M   D 
Sbjct: 401 ISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDV 460

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
           VS+N +I+    HG+G  AI L   M + GI PDR+TF+ VL+AC+HAGL++EGR+ FE+
Sbjct: 461 VSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFES 520

Query: 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
           +       P  DHYA  +DLL R G+  +AK  ++ +P +P A ++ +LL   RIH  ++
Sbjct: 521 IK-----DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVE 575

Query: 605 LGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVD 664
           LG  AA +LF+L P ++G ++LLSN+YA+ GRW D  R+R+ M+  GVKK  G SW+E  
Sbjct: 576 LGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYG 635

Query: 665 NKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSE 724
            K+H F+V D +H  +  +Y+ L +L  +MR+ GY+ D   VL D+E ++KE  + THSE
Sbjct: 636 GKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSE 695

Query: 725 KLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKC 784
           KLA+ + L+    GA +RV+KNLR+C DCH A K +SK+ GR I+VRD  RFH F DG C
Sbjct: 696 KLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLC 755

Query: 785 SCGDYW 790
           SC DYW
Sbjct: 756 SCKDYW 761



 Score =  182 bits (461), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 130/497 (26%), Positives = 222/497 (44%), Gaps = 115/497 (23%)

Query: 38  HAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP-------------------- 77
           HAH++  G      + N +ID+Y +   + +AR +FDEIP                    
Sbjct: 118 HAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWE 177

Query: 78  -------------QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
                        + +++  T ++  Y+   +++ AR  F+  P   R  V +NAM++ Y
Sbjct: 178 SEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMP--ERSVVSWNAMLSGY 235

Query: 125 SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL----------ALIVEEEKQCMQMHC 174
           + N      + LF +M    ++PD  T+ +V+SA           +L+    ++ +Q++C
Sbjct: 236 AQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNC 295

Query: 175 TVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE-RDELSWTTMMT 233
                       V  AL+ +Y KC S         +GAARR+FDE+   R+ ++W  M++
Sbjct: 296 F-----------VRTALLDMYAKCGS---------IGAARRIFDELGAYRNSVTWNAMIS 335

Query: 234 GYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR-------ELKMLML---RIQLDEF 283
            Y +   LD+ARE  + M     V WN++I+GY          EL   M+   ++  DE 
Sbjct: 336 AYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEV 395

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
           T  SVISAC + G   LG  V  +L   + K     S+  +NA++ +Y +CG + +A+ +
Sbjct: 396 TMVSVISACGHLGALELGNWVVRFLTENQIK----LSISGHNAMIFMYSRCGSMEDAKRV 451

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
           F +M  RD+VS+N ++S                               G A +G+G E +
Sbjct: 452 FQEMATRDVVSYNTLIS-------------------------------GFAAHGHGVEAI 480

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
            L S M+  G +P    F G +T+C+  G LE GR++   +     D ++     ++ + 
Sbjct: 481 NLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESI----KDPAIDHYACMVDLL 536

Query: 464 ARCGVVEAANCVFNTMP 480
            R G +E A      MP
Sbjct: 537 GRVGELEDAKRTMERMP 553



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 103/237 (43%), Gaps = 37/237 (15%)

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYA-RCGVVEA----ANCVFNTMPNVDSV 485
           +G   + RQLHAQ++H    +SL   N  + +    C  + A     + +FN+  N +  
Sbjct: 11  VGNFSHLRQLHAQIIH----NSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVF 66

Query: 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF-LTVLSACN-----HAGLVKEGR 539
            + +M+       + A+ + ++E M   G+ PD   + + + SA N     HA ++K G 
Sbjct: 67  VFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGNGGIGFHAHVLKLGH 126

Query: 540 RYFETMHGPYGIPPGEDHYAR--FIDLLCRAGKFSEAKDVIDSLP-FKPSAPIWEALLAG 596
                         G D + R   ID+  R G    A+ V D +P ++     W A+++G
Sbjct: 127 --------------GSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSG 172

Query: 597 CRIHGNIDLGIQAAEQLFQLMPH-HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
              +   +   Q A+ LF +MP  +  T+  +   YA +   + A R    M +R V
Sbjct: 173 ---YWKWESEGQ-AQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSV 225


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 285/773 (36%), Positives = 424/773 (54%), Gaps = 95/773 (12%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            +S+H   + S      ++ N  I +Y K   L  A   F++  +P++ +   LIAAY+ 
Sbjct: 27  GKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQTHEPNVFSFNALIAAYAK 86

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
              + +A  +F++ P    D V +N +I AY+   +  +A+ LF +MR   +  D FTF+
Sbjct: 87  ESLIHVAHHLFDQIP--QPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFS 144

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
            V++A    V   +Q   +H     SG   + SV N+L                      
Sbjct: 145 GVITACCNHVGLIRQ---LHSLAFSSGFDSYVSVKNSL---------------------- 179

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV--GVAWNALISGYVH--R 269
                             +T Y KN  L+ A    +GM E V   V+WN++I  Y    R
Sbjct: 180 ------------------LTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKR 221

Query: 270 ELKMLMLR-------IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
            LK L L         ++D FT  SV++  +       G Q HA  ++T           
Sbjct: 222 GLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNRH---- 277

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
           V + L+ +Y KCG                             AG+  E++ +FE +   +
Sbjct: 278 VGSGLIDMYAKCG-----------------------------AGM-SESRKVFEEICGSD 307

Query: 383 LLSWTVMISGLAQNG-YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
           L+ W  MISG +QN     E L+ F QM+  G+ P D +F  AI++C+ L +   G+Q H
Sbjct: 308 LVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFH 367

Query: 442 AQLVHSGYDSS-LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           A  + S   S+ +S  NAL+TMY++CG ++ A  +F  MP  ++V+ N++IA   QHG G
Sbjct: 368 ALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIG 427

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
             ++ L+EQML   I P  IT +++LSAC H G V+EG++YF  M   +GI P  +HY+ 
Sbjct: 428 TESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSC 487

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
            IDLL RAGK SEA+ +ID++PF P +  W ALL  CR +GN++L  +AA Q  QL P +
Sbjct: 488 MIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTN 547

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEA 680
           A  Y++L++MY+   +W++AAR+RKLMRDRG++K+PGCSWIE++ +VHVF+ +D +HP  
Sbjct: 548 AVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNSHPRI 607

Query: 681 QAVYKYLEQLVLEMRKLGYVPDTK--FVLHDMESDQ-KEYALSTHSEKLAVAFGLMKLPG 737
           + ++ YL+++ ++M++ GYVPD +  FV  D   +Q KE  L+ HSEKLAVAFGL+    
Sbjct: 608 KEIHMYLDEMFVKMKRAGYVPDVRWAFVKDDETGEQEKEIMLAHHSEKLAVAFGLLFTKH 667

Query: 738 GATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           G  + V+KNLRICGDCHNA KFMS +  R+I VRD  RFH F DG+CSCGDYW
Sbjct: 668 GEPLLVVKNLRICGDCHNAIKFMSAIARRKITVRDAYRFHCFEDGRCSCGDYW 720



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/346 (30%), Positives = 172/346 (49%), Gaps = 33/346 (9%)

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
           ++  ++ +C  +     GK +H   L++   P+  +   ++N  + LY KC  +  A   
Sbjct: 10  SFRQILKSCIANKDLLTGKSLHTIYLKS-LIPSSTY---LSNHFILLYSKCNLLTTAHHA 65

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
           FNQ  E ++ S+NA+++AY    LI  A  LF+ + + +L+S+  +I+  A  G     L
Sbjct: 66  FNQTHEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSAL 125

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
            LF +MR  G     + F+G IT+C     L   RQLH+    SG+DS +S  N+L+T Y
Sbjct: 126 SLFGEMREMGLVMDGFTFSGVITACCNHVGLI--RQLHSLAFSSGFDSYVSVKNSLLTYY 183

Query: 464 ARCGVVEAANCVFNTMPNV--DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           ++ G++E A  VFN M     D VSWN+MI A GQH  G +A+ LY  M+  G   D  T
Sbjct: 184 SKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFT 243

Query: 522 FLTVLSACN-----------HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
             +VL+  +           HA  +K G  + +  H   G+    D YA+     C AG 
Sbjct: 244 LASVLTTFSCVEDLSGGLQFHAKAIKTG--FNKNRHVGSGLI---DMYAK-----CGAG- 292

Query: 571 FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
            SE++ V + +       +W  +++G     N +L ++A E   Q+
Sbjct: 293 MSESRKVFEEIC-GSDLVVWNTMISG--YSQNKELSVEALECFRQM 335


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 270/715 (37%), Positives = 414/715 (57%), Gaps = 44/715 (6%)

Query: 88  IAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147
           IA  + + N++ AR  F   PL  R T  YNA++  Y  N    AA+ LFR M   D+  
Sbjct: 24  IAHLARAGNIEGARAAFEAMPL--RTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA- 80

Query: 148 DNFTFTSVLSALALIVEEEKQCMQMHCTVVKS-----GTGLFTSVLNALISVYVKCVSSP 202
              ++ +++S L+L     +Q +      + S         FTS+L      YV+     
Sbjct: 81  ---SYNALISGLSL----RRQTLPDAAAALASIPFPPSVVSFTSLLRG----YVR----- 124

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL 262
                 L+  A R+F +MPER+ +S+T ++ G +    ++ AR   D M +   VAW A+
Sbjct: 125 ----HGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAM 180

Query: 263 ISGYVHRELKMLMLRIQLDEF------TYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
           +SGY     ++   R   DE       ++T++IS  A +G   L +++   +        
Sbjct: 181 LSGYCQAG-RITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVM-------- 231

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
           PE +     A++  Y + G V +A ++FN MPE  + + NA++  +   G++D AK++FE
Sbjct: 232 PERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFE 291

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
            M ER+  +W+ MI    QN +  E L  F +M   G +P   +    +T CA L  L+ 
Sbjct: 292 KMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDY 351

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           GR++HA ++   +D  + A +ALITMY +CG ++ A  VF+T    D V WN+MI    Q
Sbjct: 352 GREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQ 411

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
           HG G +A+ ++  M   G+ PD IT++  L+AC++ G VKEGR  F +M     I PG +
Sbjct: 412 HGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAE 471

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           HY+  +DLL R+G   EA D+I ++P +P A IW AL+  CR+H N ++   AA++L +L
Sbjct: 472 HYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLEL 531

Query: 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT- 675
            P +AG YVLLS++Y ++GRW+DA+++RK +  R + K PGCSWIE D +VH+F   D  
Sbjct: 532 EPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVL 591

Query: 676 AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKL 735
           AHPE  A+ + LE+L   + + GY  D  FVLHD++ +QK ++L  HSE+ AVA+GL+K+
Sbjct: 592 AHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKI 651

Query: 736 PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           P G  +RV+KNLR+CGDCH+A K ++K+  REI++RD  RFHHF+DG CSC DYW
Sbjct: 652 PEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score =  152 bits (383), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 114/439 (25%), Positives = 204/439 (46%), Gaps = 89/439 (20%)

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           AR LFDE+P  D+VA T +++ Y  +  +  AR +F++ P   R+ V + AMI+ Y+ N 
Sbjct: 162 ARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMP--KRNVVSWTAMISGYAQNG 219

Query: 129 NGHAAIELFRDM-RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSV 187
             + A +LF  M  R++V     ++T++L               +    V+    LF   
Sbjct: 220 EVNLARKLFEVMPERNEV-----SWTAMLVGY------------IQAGHVEDAAELF--- 259

Query: 188 LNALISVYVKCVSSPFV--SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245
            NA+    V   ++  V    R ++ AA+ VF++M ERD+ +W+ M+  Y +N++L    
Sbjct: 260 -NAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFL---- 314

Query: 246 EFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
             ++ +S    + W  +   Y                 +  S+++ CA   +   G++VH
Sbjct: 315 --MEALSTFREMLWRGVRPNYP----------------SVISILTVCAALAVLDYGREVH 356

Query: 306 AYLLRTEAKPTPEFSLPV--NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV 363
           A +LR        F + V   +AL+T+Y KCG +++A+ +F+    +D+V WN++++ Y 
Sbjct: 357 AAMLRC------SFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYA 410

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
             GL                               GE+ L +F  MRL G  P    + G
Sbjct: 411 QHGL-------------------------------GEQALGIFHDMRLAGMSPDGITYIG 439

Query: 424 AITSCAGLGALENGRQL-HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-N 481
           A+T+C+  G ++ GR++ ++  V+S         + ++ +  R G+VE A  +   MP  
Sbjct: 440 ALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVE 499

Query: 482 VDSVSWNAMIAALGQHGNG 500
            D+V W A++ A   H N 
Sbjct: 500 PDAVIWGALMGACRMHRNA 518



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 156/347 (44%), Gaps = 69/347 (19%)

Query: 48  PREHIIN--RLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFN 105
           P+ ++++   +I  Y ++ ++  AR LF+ +P+ + V+ T ++  Y  + +V+ A E+FN
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFN 260

Query: 106 KTP-----------------------------LKMRDTVFYNAMITAYSHNSNGHAAIEL 136
             P                             +  RD   ++AMI AY  N     A+  
Sbjct: 261 AMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALST 320

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           FR+M    V+P+  +  S+L+  A +   +    ++H  +++    +    ++ALI++Y+
Sbjct: 321 FREMLWRGVRPNYPSVISILTVCAALAVLDYG-REVHAAMLRCSFDMDVFAVSALITMYI 379

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           KC +         +  A+RVF     +D + W +M+TGY ++                 G
Sbjct: 380 KCGN---------LDKAKRVFHTFEPKDIVMWNSMITGYAQH-----------------G 413

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV-HAYLLRTEAKP 315
           +   AL  G  H    M +  +  D  TY   ++AC+ +G  + G+++ ++  + +  +P
Sbjct: 414 LGEQAL--GIFH---DMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRP 468

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
             E      + +V L  + G V EA D+   MP E D V W A++ A
Sbjct: 469 GAEHY----SCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGA 511


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 270/715 (37%), Positives = 414/715 (57%), Gaps = 44/715 (6%)

Query: 88  IAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147
           IA  + + N++ AR  F   PL  R T  YNA++  Y  N    AA+ LFR M   D+  
Sbjct: 24  IAHLARAGNIEGARAAFEAMPL--RTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA- 80

Query: 148 DNFTFTSVLSALALIVEEEKQCMQMHCTVVKS-----GTGLFTSVLNALISVYVKCVSSP 202
              ++ +++S L+L     +Q +      + S         FTS+L      YV+     
Sbjct: 81  ---SYNALISGLSL----RRQTLPDAAAALASIPFPPSVVSFTSLLRG----YVR----- 124

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL 262
                 L+  A R+F +MPER+ +S+T ++ G +    ++ AR   D M +   VAW A+
Sbjct: 125 ----HGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAM 180

Query: 263 ISGYVHRELKMLMLRIQLDEF------TYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
           +SGY     ++   R   DE       ++T++IS  A +G   L +++   +        
Sbjct: 181 LSGYCQAG-RITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVM-------- 231

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
           PE +     A++  Y + G V +A ++FN MPE  + + NA++  +   G++D AK++FE
Sbjct: 232 PERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFE 291

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
            M ER+  +W+ MI    QN +  E L  F +M   G +P   +    +T CA L  L+ 
Sbjct: 292 KMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDY 351

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           GR++HA ++   +D  + A +ALITMY +CG ++ A  VF+T    D V WN+MI    Q
Sbjct: 352 GREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQ 411

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
           HG G +A+ ++  M   G+ PD IT++  L+AC++ G VKEGR  F +M     I PG +
Sbjct: 412 HGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAE 471

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           HY+  +DLL R+G   EA D+I ++P +P A IW AL+  CR+H N ++   AA++L +L
Sbjct: 472 HYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLEL 531

Query: 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT- 675
            P +AG YVLLS++Y ++GRW+DA+++RK +  R + K PGCSWIE D +VH+F   D  
Sbjct: 532 EPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVL 591

Query: 676 AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKL 735
           AHPE  A+ + LE+L   + + GY  D  FVLHD++ +QK ++L  HSE+ AVA+GL+K+
Sbjct: 592 AHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKI 651

Query: 736 PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           P G  +RV+KNLR+CGDCH+A K ++K+  REI++RD  RFHHF+DG CSC DYW
Sbjct: 652 PEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/437 (25%), Positives = 204/437 (46%), Gaps = 85/437 (19%)

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           AR LFDE+P  D+VA T +++ Y  +  +  AR +F++ P   R+ V + AMI+ Y+ N 
Sbjct: 162 ARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMP--KRNVVSWTAMISGYAQNG 219

Query: 129 NGHAAIELFRDM-RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSV 187
             + A +LF  M  R++V     ++T++L               +    V+    LF   
Sbjct: 220 EVNLARKLFEVMPERNEV-----SWTAMLVGY------------IQAGHVEDAAELF--- 259

Query: 188 LNALISVYVKCVSSPFV--SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245
            NA+    V   ++  V    R ++ AA+ VF++M ERD+ +W+ M+  Y +N++L    
Sbjct: 260 -NAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFL---- 314

Query: 246 EFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
             ++ +S    + W  +   Y                 +  S+++ CA   +   G++VH
Sbjct: 315 --MEALSTFREMLWRGVRPNYP----------------SVISILTVCAALAVLDYGREVH 356

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365
           A +LR     + +  +   +AL+T+Y KCG +++A+ +F+    +D+V WN++++ Y   
Sbjct: 357 AAMLRC----SFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQH 412

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425
           GL                               GE+ L +F  MRL G  P    + GA+
Sbjct: 413 GL-------------------------------GEQALGIFHDMRLAGMSPDGITYIGAL 441

Query: 426 TSCAGLGALENGRQL-HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVD 483
           T+C+  G ++ GR++ ++  V+S         + ++ +  R G+VE A  +   MP   D
Sbjct: 442 TACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPD 501

Query: 484 SVSWNAMIAALGQHGNG 500
           +V W A++ A   H N 
Sbjct: 502 AVIWGALMGACRMHRNA 518



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 156/347 (44%), Gaps = 69/347 (19%)

Query: 48  PREHIIN--RLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFN 105
           P+ ++++   +I  Y ++ ++  AR LF+ +P+ + V+ T ++  Y  + +V+ A E+FN
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFN 260

Query: 106 KTP-----------------------------LKMRDTVFYNAMITAYSHNSNGHAAIEL 136
             P                             +  RD   ++AMI AY  N     A+  
Sbjct: 261 AMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALST 320

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           FR+M    V+P+  +  S+L+  A +   +    ++H  +++    +    ++ALI++Y+
Sbjct: 321 FREMLWRGVRPNYPSVISILTVCAALAVLDYG-REVHAAMLRCSFDMDVFAVSALITMYI 379

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           KC +         +  A+RVF     +D + W +M+TGY ++                 G
Sbjct: 380 KCGN---------LDKAKRVFHTFEPKDIVMWNSMITGYAQH-----------------G 413

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV-HAYLLRTEAKP 315
           +   AL  G  H    M +  +  D  TY   ++AC+ +G  + G+++ ++  + +  +P
Sbjct: 414 LGEQAL--GIFH---DMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRP 468

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
             E      + +V L  + G V EA D+   MP E D V W A++ A
Sbjct: 469 GAEHY----SCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGA 511


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 255/613 (41%), Positives = 366/613 (59%), Gaps = 54/613 (8%)

Query: 187 VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAARE 246
           + N LI +Y KC S         +  A+ +FDE+P++D  SW TM++GY     ++ AR+
Sbjct: 100 ISNRLIHMYAKCGS---------LVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARK 150

Query: 247 FLDGMSENVGVAWNALISGYVHRELKM----LMLRIQLDE------FTYTSVISACANSG 296
             D M      +WNA+ISGYV +   M    L   +Q +E      FT +S ++A A   
Sbjct: 151 LFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAIS 210

Query: 297 LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWN 356
             R GK++H YL+R+                                     E D V W 
Sbjct: 211 SLRRGKEIHGYLIRSGL-----------------------------------ELDEVVWT 235

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
           A+L  Y   G ++EA+ +F+ M +++++SWT MI    ++G  +EG  LF  +   G +P
Sbjct: 236 ALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRP 295

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
            +Y FAG + +CA L A + G+++H  +   GYD    A +AL+ +Y++CG  E A  VF
Sbjct: 296 NEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVF 355

Query: 477 NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536
           N MP  D VSW ++I    Q+G    A++ +E +L+ G  PD ITF+ VLSAC HAGLV 
Sbjct: 356 NQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVD 415

Query: 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
            G  YF ++   +G+    DHYA  IDLL R+G+F EA+++ID++P KP   +W +LL G
Sbjct: 416 IGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGG 475

Query: 597 CRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEP 656
           CRIHGNI+L  +AA+ LF+L P +  TY+ LSN+YAN G W +  +VR  M +RG+ K+P
Sbjct: 476 CRIHGNIELAERAAKALFELEPENPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKP 535

Query: 657 GCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKE 716
           G SWIE+  +VHVFLV DT+HP+   +++YL +L  +M++ GYV DT FVLHD+E +QKE
Sbjct: 536 GKSWIEIKRQVHVFLVGDTSHPKISDIHEYLGELSKKMKEEGYVADTNFVLHDVEEEQKE 595

Query: 717 YALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRF 776
             +  HSEKLAVAFG++    G  ++V KNLR C DCHNA K++SK+V R+I+VRD  RF
Sbjct: 596 QNIFYHSEKLAVAFGIISTSPGTPIKVFKNLRTCVDCHNAMKYISKIVQRKIIVRDSNRF 655

Query: 777 HHFRDGKCSCGDY 789
           H F DG CSC DY
Sbjct: 656 HCFVDGSCSCKDY 668



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 152/511 (29%), Positives = 241/511 (47%), Gaps = 79/511 (15%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L + VHAH  +S F P   I NRLI +Y K   LV A+ LFDEIPQ D+ +  T+I+ Y+
Sbjct: 81  LGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYA 140

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
               ++ AR++F++ P   RD   +NA+I+ Y        A++LFR M+ ++    N   
Sbjct: 141 NVGRIEQARKLFDEMP--HRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFT 198

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            S   A A  +   ++  ++H  +++SG  L   V  AL+ +Y KC S         +  
Sbjct: 199 LSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGS---------LNE 249

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDG-MSENVGVAWNALISGYVHREL 271
           AR +FD+M ++D +SWTTM+            R F DG   E   +  + + SG      
Sbjct: 250 ARGIFDQMADKDIVSWTTMI-----------HRCFEDGRKKEGFSLFRDLMGSG------ 292

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                 ++ +E+T+  V++ACA+    ++GK+VH Y+ R    P   FS    +ALV +Y
Sbjct: 293 ------VRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDP---FSFAA-SALVHVY 342

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            KCG    AR +FNQMP  DLVSW +++  Y                             
Sbjct: 343 SKCGNTETARRVFNQMPRPDLVSWTSLIVGY----------------------------- 373

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ-LHAQLVHSGYD 450
             AQNG  +  L+ F  +   G KP +  F G +++C   G ++ G +  H+     G  
Sbjct: 374 --AQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLV 431

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQ 509
            +      +I + AR G  + A  + + MP   D   W +++     HGN    IEL E+
Sbjct: 432 HTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGN----IELAER 487

Query: 510 MLKE--GILPDR-ITFLTVLSACNHAGLVKE 537
             K    + P+   T++T+ +   +AGL  E
Sbjct: 488 AAKALFELEPENPATYITLSNIYANAGLWTE 518



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 169/332 (50%), Gaps = 7/332 (2%)

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           Y+++I+AC       LGK+VHA+   +   P     + ++N L+ +Y KCG + +A+ +F
Sbjct: 66  YSTLIAACLRHRKLELGKRVHAHTKASNFIP----GIVISNRLIHMYAKCGSLVDAQMLF 121

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           +++P++DL SWN ++S Y + G I++A+ LF+ M  R+  SW  +ISG    G+  E L 
Sbjct: 122 DEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALD 181

Query: 405 LFSQMRLEGFKPCD-YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
           LF  M+      C+ +  + A+ + A + +L  G+++H  L+ SG +       AL+ +Y
Sbjct: 182 LFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLY 241

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
            +CG +  A  +F+ M + D VSW  MI    + G       L+  ++  G+ P+  TF 
Sbjct: 242 GKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFA 301

Query: 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF 583
            VL+AC      + G+     M    G  P     +  + +  + G    A+ V + +P 
Sbjct: 302 GVLNACADLAAEQMGKEVHGYM-TRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMP- 359

Query: 584 KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
           +P    W +L+ G   +G  D+ +Q  E L +
Sbjct: 360 RPDLVSWTSLIVGYAQNGQPDMALQFFESLLR 391



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 4/132 (3%)

Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
           +P    ++  I +C     LE G+++HA    S +   +   N LI MYA+CG +  A  
Sbjct: 60  QPSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQM 119

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
           +F+ +P  D  SWN MI+     G   +A +L+++M       D  ++  V+S     G 
Sbjct: 120 LFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHR----DNFSWNAVISGYVSQGW 175

Query: 535 VKEGRRYFETMH 546
             E    F  M 
Sbjct: 176 YMEALDLFRMMQ 187


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 281/833 (33%), Positives = 450/833 (54%), Gaps = 101/833 (12%)

Query: 3   MKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCK 62
           ++N   + +LA+  + +L+L         ++  ++ A ++ +GF P     N  +  + K
Sbjct: 9   LQNLTSLTSLASLQSPKLRL---------NVVNNIDARIVKTGFDPDTSRSNFRVGNFLK 59

Query: 63  SLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
           + +L  AR LF+++P  + V+   +I+ Y  S N+  AR++F+   +  R  V +  +I 
Sbjct: 60  NGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDG--MVERTAVTWTILIG 117

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTG 182
            YS  +    A ELF  M+R   +PD  TF ++LS      E   Q  Q+   ++K G  
Sbjct: 118 GYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNG-HEMGNQITQVQTQIIKLGYD 176

Query: 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTG-------- 234
               V N L+  Y K       S+R  +  A ++F EMPE D  ++  ++          
Sbjct: 177 SRLIVGNTLVDSYCK-------SNR--LDLACQLFKEMPEIDSFTFAAVLCANIGLDDIV 227

Query: 235 ---------------------------YVKNDYLDAAREFLDGMSENVGVAWNALISGYV 267
                                      Y K+D +  AR+  D M E  GV++N +ISGY 
Sbjct: 228 LGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYA 287

Query: 268 ----HRELKMLMLRIQL-----DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
               H+    L   +Q       +F + +++S  +N+  + +G+Q+HA  + T    T +
Sbjct: 288 WDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVT----TAD 343

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
             + V N+LV +Y KCGK                                +EA+ +F  +
Sbjct: 344 SEILVGNSLVDMYAKCGK-------------------------------FEEAEMIFTNL 372

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
             R+ + WT MIS   Q G+ EEGL+LF++MR          FA  + + A + +L  G+
Sbjct: 373 THRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGK 432

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           QLH+ ++ SG+ S++ +G+AL+ +YA+CG ++ A   F  MP+ + VSWNAMI+A  Q+G
Sbjct: 433 QLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNG 492

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
                ++ +++M+  G+ PD ++FL VLSAC+H+GLV+EG  +F +M   Y + P  +HY
Sbjct: 493 EAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHY 552

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
           A  +D+LCR+G+F+EA+ ++  +P  P   +W ++L  CRIH N +L  +AA+QLF +  
Sbjct: 553 ASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEE 612

Query: 619 -HHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAH 677
              A  YV +SN+YA  G+W++ ++V K MRDRGVKK P  SW+E+ ++ H+F  +D  H
Sbjct: 613 LRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCH 672

Query: 678 PEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPG 737
           P+ + + K ++ L   M +LGY PDT   LH+ +   K  +L  HSE+LA+AF L+  P 
Sbjct: 673 PQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAFALISTPE 732

Query: 738 GATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           G+ + V+KNLR C DCH A K +SK+VGREI VRD  RFHHFRDG CSCGD+W
Sbjct: 733 GSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 785


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 267/735 (36%), Positives = 407/735 (55%), Gaps = 44/735 (5%)

Query: 61  CKS---LKLVYARTLFDE-IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVF 116
           CKS   LK ++++T+    I  P + A+           +++ AR +F+  P    +   
Sbjct: 29  CKSMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGP--NHFV 86

Query: 117 YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC-MQMHCT 175
           +N MI  YS     ++A+ ++ +M    V PD +T+  +L       +   +C  ++H  
Sbjct: 87  WNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTR--DTAVKCGRELHDH 144

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
           +VK G      V NALI +Y         S    +  AR VFD   + D ++W  M++GY
Sbjct: 145 IVKLGFSSNVFVQNALIHLY---------SLSGEVSVARGVFDRSSKGDVVTWNVMISGY 195

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
            ++   D + +  D M                        +R+     T  SV+SAC+  
Sbjct: 196 NRSKQFDESMKLFDEMER----------------------MRVLPSSITLVSVLSACSKL 233

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
               +GK+VH Y+   + +P       + NAL+ +Y  CG ++ A  IF+ M  RD++SW
Sbjct: 234 KDLNVGKRVHRYVKDLKIEPV----RVLENALIDMYAACGDMDTALGIFDNMKSRDVISW 289

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
            AI++ + + G +  A++ F+ M ER+ +SWT MI G  Q    +E L LF +M+    K
Sbjct: 290 TAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIK 349

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P ++     +T+CA LGALE G  + A +  +        GNALI MY  CG VE A  +
Sbjct: 350 PDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRI 409

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           FN MP+ D +SW A+I  L  +G G  A++++ QMLK  I PD +T + VL AC H+G+V
Sbjct: 410 FNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMV 469

Query: 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
            +G+++F  M   +GI P   HY   +DLL RAG   EA +VI ++P KP++ +W +LL 
Sbjct: 470 DKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLG 529

Query: 596 GCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKE 655
            CR+H + ++   AA+Q+ +L P +   YVLL N+YA   RW+    VRKLM DRG+KK 
Sbjct: 530 ACRVHRDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKT 589

Query: 656 PGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQK 715
           PGCS IE++  VH F+  D  HP+++ +Y  L+++ ++++  GY PDT  V  D+  ++K
Sbjct: 590 PGCSLIEMNGSVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEK 649

Query: 716 EYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKR 775
           E A+  HSEKLA+AFGL+    G T+R++KNLR+C DCH   K +SKV  RE++VRD  R
Sbjct: 650 ESAVYRHSEKLAIAFGLISSGPGVTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTR 709

Query: 776 FHHFRDGKCSCGDYW 790
           FHHFR G CSC DYW
Sbjct: 710 FHHFRHGSCSCKDYW 724



 Score =  201 bits (512), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 149/526 (28%), Positives = 246/526 (46%), Gaps = 68/526 (12%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ----PDIVARTTLIA 89
           A S++  M+  G  P E+    L+  + +   +   R L D I +     ++  +  LI 
Sbjct: 103 AVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIH 162

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
            YS S  V +AR +F+++     D V +N MI+ Y+ +     +++LF +M R  V P +
Sbjct: 163 LYSLSGEVSVARGVFDRS--SKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSS 220

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
            T  SVLSA + + ++     ++H  V          + NALI +Y  C           
Sbjct: 221 ITLVSVLSACSKL-KDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGD--------- 270

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY--V 267
           M  A  +FD M  RD +SWT ++TG+     +  AR + D M E   V+W A+I GY  V
Sbjct: 271 MDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQV 330

Query: 268 HRELKMLML-------RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
           +R  ++L L        I+ DEFT  S+++ACA+ G   LG+ + AY+ + E K      
Sbjct: 331 NRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIK----ID 386

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
             V NAL+ +Y+ CG V +A  IFN MP RD +SW A+                      
Sbjct: 387 SFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAV---------------------- 424

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
                    I GLA NGYGEE L +FSQM      P +    G + +C   G ++ G++ 
Sbjct: 425 ---------IFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKF 475

Query: 441 HAQL-VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHG 498
            A++    G + +++    ++ +  R G ++ A+ V   MP   +S+ W +++ A   H 
Sbjct: 476 FARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHR 535

Query: 499 NGARAIELYEQMLKEGILPDR----ITFLTVLSACNHAGLVKEGRR 540
           +   A    +Q+L+  + P+     +    + +ACN    + E R+
Sbjct: 536 DEEMAEMAAQQILE--LEPENGAVYVLLCNIYAACNRWEKLHEVRK 579



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 156/332 (46%), Gaps = 40/332 (12%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           ++ + VH ++     +P   + N LID+Y     +  A  +FD +   D+++ T ++  +
Sbjct: 237 NVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGF 296

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
           +    V LAR  F+K P   RD V + AMI  Y   +     + LFR+M+  ++KPD FT
Sbjct: 297 TNLGQVGLARNYFDKMP--ERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFT 354

Query: 152 FTSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
             S+L+A A L   E  + ++ +  + K+   + + V NALI +Y  C +         +
Sbjct: 355 MVSILTACAHLGALELGEWIKAY--IDKNEIKIDSFVGNALIDMYFNCGN---------V 403

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
             A R+F+ MP RD++SWT ++ G   N Y     E LD  S+                 
Sbjct: 404 EKAIRIFNAMPHRDKISWTAVIFGLAINGY---GEEALDMFSQ----------------- 443

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
             ML   I  DE T   V+ AC +SG+   GK+   +  R   +   E ++     +V L
Sbjct: 444 --MLKASITPDEVTCIGVLCACTHSGMVDKGKK---FFARMTTQHGIEPNVAHYGCMVDL 498

Query: 331 YWKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
             + G + EA ++   MP + + + W ++L A
Sbjct: 499 LGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGA 530



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 156/349 (44%), Gaps = 16/349 (4%)

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA-------GL 367
           PT   SLP    L +L   C  + + + I +Q     L+S N I+ A + A       G 
Sbjct: 11  PTHLPSLPQTPPL-SLIKTCKSMAQLKQIHSQTICTGLIS-NPIVPAQIIAFCCKHELGD 68

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
           ++ A+ +F+ M   N   W  MI G ++ G     + ++ +M   G  P +Y +   +  
Sbjct: 69  MEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKR 128

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
                A++ GR+LH  +V  G+ S++   NALI +Y+  G V  A  VF+     D V+W
Sbjct: 129 FTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTW 188

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
           N MI+   +      +++L+++M +  +LP  IT ++VLSAC+    +  G+R    +  
Sbjct: 189 NVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKD 248

Query: 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
              I P        ID+    G    A  + D++  +     W A++ G    G + L  
Sbjct: 249 -LKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVIS-WTAIVTGFTNLGQVGL-- 304

Query: 608 QAAEQLFQLMPHHA-GTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKE 655
             A   F  MP     ++  + + Y  + R+ +   + + M+   +K +
Sbjct: 305 --ARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPD 351


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 283/761 (37%), Positives = 411/761 (54%), Gaps = 96/761 (12%)

Query: 68  YARTLFDEIPQP-DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSH 126
           YA TL   + Q   + + T+ I+ Y    ++  AR++F+ TPL  R    +NAM++AY  
Sbjct: 5   YAATLRCRMVQARSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFE 64

Query: 127 NSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS 186
           +     A+ LF  M + +                                        T 
Sbjct: 65  SHKPRDALLLFDQMPQRN----------------------------------------TV 84

Query: 187 VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAARE 246
             N +IS YVK           ++  AR+VFD MPER+ +SWT+M+ GYV+   ++ A +
Sbjct: 85  SFNGMISGYVK---------NGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEK 135

Query: 247 FLDGMSENVGVAWNALISGYVHREL-----KMLMLRIQLDEFTYTSVISACANSGLFRLG 301
               M     V+W  +I G +         K+  +  + D    T++I      G  ++G
Sbjct: 136 LFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIG-----GYCQVG 190

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
           +   A  L  E K    F+      +V+ Y K G+V+ AR +F  MPER+ VSW A+L  
Sbjct: 191 RLDEARELFDEMKVRNVFTW---TTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMG 247

Query: 362 YVSAGLIDEAKSLFEAM-------------------------------RERNLLSWTVMI 390
           Y  +G + EA  LFEAM                               +ER+  +W  MI
Sbjct: 248 YTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMI 307

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
               + G   E L LF++M+ EG      +    ++ CA L +L++GRQ+HA+LV S +D
Sbjct: 308 KVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFD 367

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
             L   + LITMY +CG +  A  +FN     D V WN+MI    QHG G  A+ ++  M
Sbjct: 368 QDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDM 427

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
              G+ PD +TF+ VLSAC+++G VKEG   FE M   Y + PG +HYA  +DLL RAG+
Sbjct: 428 CSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGR 487

Query: 571 FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630
             EA ++++ +P +P A +W ALL  CR H  +DL   A E+L +L P +AG YVLLS+M
Sbjct: 488 VDEAMELVEKMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHM 547

Query: 631 YANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT-AHPEAQAVYKYLEQ 689
           YA  GRW D   +RK + +R V K PGCSWIEV+ KVH+F   D+ +HPE   + + LE+
Sbjct: 548 YATKGRWRDVEVLRKKI-NRRVIKFPGCSWIEVEKKVHMFTGGDSKSHPEQHMITQMLEK 606

Query: 690 LVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRI 749
           L   +R+ GY PD  FVLHD++ ++K ++L  HSE+LAVA+GL+K+P G  +RV+KNLR+
Sbjct: 607 LSGFLREAGYCPDGSFVLHDVDEEEKTHSLGYHSERLAVAYGLLKVPEGMPIRVMKNLRV 666

Query: 750 CGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           CGDCH+A K ++KV GREI++RD  RFHHF+DG CSC D+W
Sbjct: 667 CGDCHSAIKLIAKVTGREIILRDANRFHHFKDGSCSCKDFW 707



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 144/605 (23%), Positives = 234/605 (38%), Gaps = 167/605 (27%)

Query: 8   YIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFK----PREHII--NRLIDIYC 61
           Y  TL  R      LC   + I S   R    H     F     P+  I   N ++  Y 
Sbjct: 5   YAATLRCRMVQARSLCSNTSAI-SRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYF 63

Query: 62  KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMI 121
           +S K   A  LFD++PQ + V+   +I+ Y  +  V  AR++F+  P   R+ V + +M+
Sbjct: 64  ESHKPRDALLLFDQMPQRNTVSFNGMISGYVKNGMVADARKVFDVMP--ERNVVSWTSMV 121

Query: 122 TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGT 181
             Y        A +LF +M R +V     ++T ++  L   ++E +         +    
Sbjct: 122 RGYVQEGMVEEAEKLFWEMPRRNV----VSWTVMIGGL---LKESR---------IDDAK 165

Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
            LF  +    + V    +       R  +  AR +FDEM  R+  +WTTM++GY KN  +
Sbjct: 166 KLFDMIPEKDVVVVTNMIGGYCQVGR--LDEARELFDEMKVRNVFTWTTMVSGYAKNGRV 223

Query: 242 DAAREFLDGMSENVGVAWNALISGY----------------------------------- 266
           D AR+  + M E   V+W A++ GY                                   
Sbjct: 224 DVARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAG 283

Query: 267 -VHRELKMLMLRIQLDEFTYTSVISACANSGL--------FRLGKQ-------------- 303
            +HR   M     + DE T+ ++I      GL         R+ ++              
Sbjct: 284 EMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLS 343

Query: 304 -------------VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
                        VHA L+R+E        L V + L+T+Y KCG +  A+ IFN+   +
Sbjct: 344 VCASLASLDHGRQVHARLVRSEFDQ----DLYVASVLITMYVKCGDLVRAKGIFNRFLFK 399

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           D+V WN++++ Y                               +Q+G GEE L +F  M 
Sbjct: 400 DVVMWNSMITGY-------------------------------SQHGLGEEALNVFHDMC 428

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
             G +P +  F G +++C+  G ++ G +                            + E
Sbjct: 429 SSGVQPDEVTFIGVLSACSYSGKVKEGFE----------------------------IFE 460

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC- 529
           A  C +   P ++   +  M+  LG+ G    A+EL E+M  E   PD I +  +L AC 
Sbjct: 461 AMKCTYQVEPGIE--HYACMVDLLGRAGRVDEAMELVEKMPME---PDAIVWGALLGACR 515

Query: 530 NHAGL 534
           NH  L
Sbjct: 516 NHMKL 520


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 239/583 (40%), Positives = 357/583 (61%), Gaps = 49/583 (8%)

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           AR +FD+MPERD  SW  M+TGYV+N  L  AR   + M E   V+WNA++SGY      
Sbjct: 14  ARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGY------ 67

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN-----NAL 327
                               A +G     +++              + +P+      N L
Sbjct: 68  --------------------AQNGFVDEAREIF-------------YKMPLKNGISWNGL 94

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWT 387
           +  Y + G++ +A+ +F    +  LVSWN ++      G + + ++LF+ M +R+ +SW+
Sbjct: 95  LAAYVQNGRIEDAKRLFESKMDWTLVSWNCLM-----GGFVRKRRNLFDNMPQRDSISWS 149

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447
            MI+G +QNG  EE L  F +M+ +  +    +F  A+++C+ + ALE GRQLH +LV +
Sbjct: 150 AMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKA 209

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
           GY +    GNAL+ MY +CG ++ A   F  +   D VSWN MI    +HG G  A+ ++
Sbjct: 210 GYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVF 269

Query: 508 EQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR 567
           E M   GI PD  T ++VL+AC+HAGLV +G  YF +M+  YGI     HY   +DLL R
Sbjct: 270 ELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGR 329

Query: 568 AGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627
           AG+  EA++++ ++PF+P A  W ALL   RIHGN +LG +AA+ +F++ PH++G Y+LL
Sbjct: 330 AGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIFEMEPHNSGMYILL 389

Query: 628 SNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYL 687
           S +YA  GRW DA ++R  MR++GVKK PG SW+EV NK+H F V DT+HP    +Y +L
Sbjct: 390 SKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQNKIHTFKVGDTSHPHTDKIYTFL 449

Query: 688 EQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNL 747
           E++ L++++ GY+  T  V HD+E ++K + L  HSEKLAVA+G++ +P G  +RV+KNL
Sbjct: 450 EEMDLKLKQEGYISSTNLVFHDVEEEEKVHMLKYHSEKLAVAYGILYIPAGRPIRVIKNL 509

Query: 748 RICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           R+C DCHNA K++SK+VGR I++RD  RFH+F  G CSC D+W
Sbjct: 510 RVCEDCHNAIKYISKIVGRLIILRDNHRFHYFEGGSCSCRDFW 552



 Score =  159 bits (401), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 116/460 (25%), Positives = 203/460 (44%), Gaps = 87/460 (18%)

Query: 56  LIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTV 115
           +I  Y ++ K   AR LFD++P+ D+ +   ++  Y  + ++K AR +F + P   RD V
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMP--ERDIV 58

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
            +NAM++ Y+ N     A E+F  M       +  ++  +L+A    V+  +        
Sbjct: 59  SWNAMLSGYAQNGFVDEAREIFYKM----PLKNGISWNGLLAAY---VQNGR-------- 103

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
            ++    LF S ++  + V   C+   FV  R      R +FD MP+RD +SW+ M+ GY
Sbjct: 104 -IEDAKRLFESKMDWTL-VSWNCLMGGFVRKR------RNLFDNMPQRDSISWSAMIAGY 155

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
            +N   + A  F   M  +                        +L+  ++T  +S C+N 
Sbjct: 156 SQNGCSEEALHFFVEMQRDCE----------------------RLNRSSFTCALSTCSNI 193

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
               LG+Q+H  L+    K   +    V NAL+ +Y KCG ++EARD F ++ E+D+VSW
Sbjct: 194 AALELGRQLHCRLV----KAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSW 249

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           N ++  Y   G  +EA ++FE M+                                 G +
Sbjct: 250 NTMIHGYARHGFGEEALTVFELMKT-------------------------------TGIR 278

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANC 474
           P D      + +C+  G ++ G +    +    G  + L     ++ +  R G +E A  
Sbjct: 279 PDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQN 338

Query: 475 VFNTMP-NVDSVSWNAMIAALGQHGN---GARAIELYEQM 510
           +   MP   D+ +W A++ A   HGN   G +A ++  +M
Sbjct: 339 LMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIFEM 378



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 170/366 (46%), Gaps = 46/366 (12%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
           N L+  Y ++ ++  A+ LF+      +V+   L+  +     V+  R +F+  P   RD
Sbjct: 92  NGLLAAYVQNGRIEDAKRLFESKMDWTLVSWNCLMGGF-----VRKRRNLFDNMP--QRD 144

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMH 173
           ++ ++AMI  YS N     A+  F +M+RD  + +  +FT  LS  + I   E    Q+H
Sbjct: 145 SISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALELG-RQLH 203

Query: 174 CTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMT 233
           C +VK+G      V NAL+++Y KC S         +  AR  F E+ E+D +SW TM+ 
Sbjct: 204 CRLVKAGYQTGWYVGNALLAMYCKCGS---------IDEARDAFQEILEKDVVSWNTMIH 254

Query: 234 GYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACA 293
           GY ++ + + A    + M                          I+ D+ T  SV++AC+
Sbjct: 255 GYARHGFGEEALTVFELMKTT----------------------GIRPDDATMVSVLAACS 292

Query: 294 NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDL 352
           ++GL   G + + Y +  +   T +  L     +V L  + G++ EA+++   MP E D 
Sbjct: 293 HAGLVDQGSE-YFYSMNRDYGITAK--LVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDA 349

Query: 353 VSWNAILSAYVSAG---LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
            +W A+L A    G   L ++A  +   M   N   + ++    A +G   +  K+  +M
Sbjct: 350 ATWGALLGASRIHGNTELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEM 409

Query: 410 RLEGFK 415
           R +G K
Sbjct: 410 RNKGVK 415



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 88/226 (38%), Gaps = 55/226 (24%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF 73
           NR +    L    N     L R +H  ++ +G++   ++ N L+ +YCK   +  AR  F
Sbjct: 179 NRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAF 238

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
            EI + D+V+                                 +N MI  Y+ +  G  A
Sbjct: 239 QEILEKDVVS---------------------------------WNTMIHGYARHGFGEEA 265

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
           + +F  M+   ++PD+ T  SVL+A +            H  +V  G+  F S +N    
Sbjct: 266 LTVFELMKTTGIRPDDATMVSVLAACS------------HAGLVDQGSEYFYS-MNRDYG 312

Query: 194 VYVKCVSSPFVSSRSLMG------AARRVFDEMP-ERDELSWTTMM 232
           +  K V   +     L+G       A+ +   MP E D  +W  ++
Sbjct: 313 ITAKLVH--YTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALL 356


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 269/740 (36%), Positives = 406/740 (54%), Gaps = 96/740 (12%)

Query: 88  IAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147
           I+ ++    +  AR +F+   L+ +    +NA++  Y HN     A +LF  M      P
Sbjct: 23  ISYFARLGQIDRARNIFDD--LQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKM------P 74

Query: 148 DNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSR 207
           +  T +                                   N L+S YVK          
Sbjct: 75  ERNTIS----------------------------------WNGLVSGYVK---------N 91

Query: 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV 267
            ++  AR+VFD+MPER+ +SWT+M+ GYV+   +D A      M E   V+W  ++ G +
Sbjct: 92  GMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVVSWTVMLGGLI 151

Query: 268 HR----ELKMLMLRIQL-DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
                 E + L   I + D    T++I    + G     +++   +        P+ ++ 
Sbjct: 152 EDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEM--------PQRNVV 203

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM---- 378
              ++++ Y    KV+ AR +F  MP+++ V+W A+L  Y  +G I+EA  LF+AM    
Sbjct: 204 AWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKP 263

Query: 379 ---------------------------RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
                                      +E++  +W+ +I    + G+  E L LFS M+ 
Sbjct: 264 VAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQR 323

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
           EG +P   +    ++ C  L +L++GRQ+H+QLV S +D  +   + LITMY +CG +  
Sbjct: 324 EGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVT 383

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
              VF+   + D V WN++IA   QHG G +A+E++ +M   G  PD ITF+ VLSAC +
Sbjct: 384 GKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGY 443

Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
            G VKEG   FE+M   Y +    +HYA  +DLL RAGK +EA ++I+++P +  A +W 
Sbjct: 444 TGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWG 503

Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
           ALL+ CR H N+DL   AA++L QL P  AG Y+LLSN+YA+  RW D A +RK MR R 
Sbjct: 504 ALLSACRTHKNLDLAEIAAKKLLQLEPSSAGPYILLSNLYASQSRWKDVAELRKTMRARN 563

Query: 652 VKKEPGCSWIEVDNKVHVFLVDDTA-HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDM 710
           V K PGCSWIEVDNKVH+F    +A HPE + + K LE+L   +R+ GY PD  FV+HD+
Sbjct: 564 VSKSPGCSWIEVDNKVHMFTGGGSASHPEHEMIMKKLEKLGASLREAGYCPDGSFVMHDV 623

Query: 711 ESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVV 770
           + + K ++L  HSEK+AVA+GL+K+P G  +RV+KNLR+CGDCH+A K +++V GREI++
Sbjct: 624 DEEDKVHSLRHHSEKMAVAYGLLKVPVGKPIRVMKNLRVCGDCHSAIKLIAQVTGREIIL 683

Query: 771 RDGKRFHHFRDGKCSCGDYW 790
           RD  RFHHF+DG CSC D+W
Sbjct: 684 RDANRFHHFKDGLCSCRDFW 703



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 109/441 (24%), Positives = 192/441 (43%), Gaps = 95/441 (21%)

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           AR LFD IP  D+VA T +I    +   +  ARE+F++ P   R+ V + +MI+ Y+ N+
Sbjct: 159 ARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMP--QRNVVAWTSMISGYAMNN 216

Query: 129 NGHAAIELFRDMRRDDVKPDN--FTFTSVLSAL---ALIVEEEKQCMQMHCTVVKSGTGL 183
               A +LF      +V PD    T+T++L        I E  +    M    V +  G+
Sbjct: 217 KVDVARKLF------EVMPDKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGM 270

Query: 184 FTSV-LNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY-L 241
                LN  +                  G AR VFD+M E+D+ +W+ ++  Y +  + L
Sbjct: 271 IMGFGLNGEV------------------GKARWVFDQMKEKDDGTWSALIKIYERKGFEL 312

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
           +A   F     E V   + ++I                       S++S C +      G
Sbjct: 313 EALALFSLMQREGVRPNFPSII-----------------------SILSVCGSLASLDHG 349

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
           +QVH+ L+R+      +  + V++ L+T+Y KCG +   + +F++   +D+V WN+I++ 
Sbjct: 350 RQVHSQLVRSHF----DLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAG 405

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
           Y                               AQ+G+GE+ L++F +M   G  P +  F
Sbjct: 406 Y-------------------------------AQHGFGEKALEVFHEMFSSGAAPDEITF 434

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGY--DSSLSAGNALITMYARCGVV-EAANCVFNT 478
            G +++C   G ++ G ++   +  S Y  D        ++ +  R G + EA N + N 
Sbjct: 435 IGVLSACGYTGKVKEGLEIFESM-KSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENM 493

Query: 479 MPNVDSVSWNAMIAALGQHGN 499
               D++ W A+++A   H N
Sbjct: 494 PVEADAIVWGALLSACRTHKN 514



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 142/331 (42%), Gaps = 89/331 (26%)

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
           S  +    ++ + + G+++ AR+IF+ +  + + SWNAI++ Y       EA+ LF+ M 
Sbjct: 15  SAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMP 74

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
           ERN +SW  ++SG  +NG   E  K+F +M                              
Sbjct: 75  ERNTISWNGLVSGYVKNGMISEARKVFDKMP----------------------------- 105

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
                     + ++ +  +++  Y + G+++ A  +F  MP  + VSW  M+        
Sbjct: 106 ----------ERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVVSWTVMLG------- 148

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA 559
                         G++ D              G V E RR F+ +       P +D  A
Sbjct: 149 --------------GLIED--------------GRVDEARRLFDMI-------PVKDVVA 173

Query: 560 --RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
               I  LC  G+ SEA+++ D +P + +   W ++++G  ++  +D+    A +LF++M
Sbjct: 174 STNMIGGLCSEGRLSEAREIFDEMP-QRNVVAWTSMISGYAMNNKVDV----ARKLFEVM 228

Query: 618 P-HHAGTYVLLSNMYANLGRWDDAARVRKLM 647
           P  +  T+  +   Y   GR ++AA + K M
Sbjct: 229 PDKNEVTWTAMLKGYTRSGRINEAAELFKAM 259



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 150/367 (40%), Gaps = 96/367 (26%)

Query: 56  LIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAR-------------- 101
           +I   C   +L  AR +FDE+PQ ++VA T++I+ Y+ ++ V +AR              
Sbjct: 177 MIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTW 236

Query: 102 -----------------EMFNKTP-----------------------------LKMRDTV 115
                            E+F   P                             +K +D  
Sbjct: 237 TAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDG 296

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
            ++A+I  Y        A+ LF  M+R+ V+P+  +  S+LS    +   +    Q+H  
Sbjct: 297 TWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLD-HGRQVHSQ 355

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
           +V+S   L   V + LI++Y+KC           +   +RVFD    +D + W +++ GY
Sbjct: 356 LVRSHFDLDIYVSSVLITMYIKCGD---------LVTGKRVFDRFSSKDIVMWNSIIAGY 406

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
            ++ + + A E    M  + G A                      DE T+  V+SAC  +
Sbjct: 407 AQHGFGEKALEVFHEMFSS-GAA---------------------PDEITFIGVLSACGYT 444

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVS 354
           G  + G ++   +   ++K   +        +V L  + GK+NEA ++   MP E D + 
Sbjct: 445 GKVKEGLEIFESM---KSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIV 501

Query: 355 WNAILSA 361
           W A+LSA
Sbjct: 502 WGALLSA 508



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 94/213 (44%), Gaps = 27/213 (12%)

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
           S + SS +     I+ +AR G ++ A  +F+ + +    SWNA++A    +   A A +L
Sbjct: 10  SYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKL 69

Query: 507 YEQMLKEGILPDR--ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED--HYARFI 562
           +++M      P+R  I++  ++S     G++ E R+ F+ M       P  +   +   +
Sbjct: 70  FDKM------PERNTISWNGLVSGYVKNGMISEARKVFDKM-------PERNVVSWTSMV 116

Query: 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622
               + G   EA+ +   +P K +   W  +L G    G +D     A +LF ++P    
Sbjct: 117 RGYVQEGLIDEAELLFWRMPEK-NVVSWTVMLGGLIEDGRVD----EARRLFDMIP--VK 169

Query: 623 TYVLLSNMYANL---GRWDDAARVRKLMRDRGV 652
             V  +NM   L   GR  +A  +   M  R V
Sbjct: 170 DVVASTNMIGGLCSEGRLSEAREIFDEMPQRNV 202



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 81/218 (37%), Gaps = 55/218 (25%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R VH+ ++ S F    ++ + LI +Y K   LV  + +FD     DIV           
Sbjct: 349 GRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIV----------- 397

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                                  +N++I  Y+ +  G  A+E+F +M      PD  TF 
Sbjct: 398 ----------------------MWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFI 435

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
            VLSA              +   VK G  +F S+ +      V   +  +     L+G A
Sbjct: 436 GVLSACG------------YTGKVKEGLEIFESMKS---KYQVDQKTEHYACMVDLLGRA 480

Query: 214 RR------VFDEMP-ERDELSWTTMMTGYVKNDYLDAA 244
            +      + + MP E D + W  +++    +  LD A
Sbjct: 481 GKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLA 518


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 256/687 (37%), Positives = 397/687 (57%), Gaps = 34/687 (4%)

Query: 104 FNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIV 163
            N  P  +  +  +N +IT+Y+  +    A+ ++  +R+ D + DNF   SVL A    V
Sbjct: 79  LNDFPSGLSPSAQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQ-V 137

Query: 164 EEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER 223
              +   ++H  V+K G      V NAL+ +Y +C    +         AR VFD+M ER
Sbjct: 138 SWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEY---------ARLVFDKMMER 188

Query: 224 DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEF 283
           D +SW+TM+    +N   D A E +                    RE+  + +R    E 
Sbjct: 189 DVVSWSTMIRSLSRNKEFDMALELI--------------------REMNFMQVRP--SEV 226

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
              S+++  A++   R+GK +HAY++R          +P   AL+ +Y KCG +  AR +
Sbjct: 227 AMVSMVNLFADTANMRMGKAMHAYVIRNSNNE--HMGVPTTTALLDMYAKCGHLGLARQL 284

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
           FN + ++ +VSW A+++  + +  ++EA++LF++ + R+++ WT M+S  AQ    ++  
Sbjct: 285 FNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAF 344

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
            LF QMR  G +P        ++ CA  GAL+ G+ +H+ +     +       AL+ MY
Sbjct: 345 NLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMY 404

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
           A+CG + AA  +F    + D   WNA+I     HG G  A++++ +M ++G+ P+ ITF+
Sbjct: 405 AKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFI 464

Query: 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF 583
            +L AC+HAGLV EG++ FE M   +G+ P  +HY   +DLL RAG   EA ++I S+P 
Sbjct: 465 GLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPI 524

Query: 584 KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARV 643
           KP+  +W AL+A CR+H N  LG  AA QL ++ P + G  VL+SN+YA   RW DAA V
Sbjct: 525 KPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGV 584

Query: 644 RKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDT 703
           RK M+  G+KKEPG S IEV+  VH FL+ D +HP+ + + + L ++  ++ + GYVPDT
Sbjct: 585 RKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDT 644

Query: 704 KFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKV 763
             VL +++ ++KE AL+ HSEKLA+AFGL+       +R++KNLR+C DCH A K +SK+
Sbjct: 645 STVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKI 704

Query: 764 VGREIVVRDGKRFHHFRDGKCSCGDYW 790
            GR I+VRD  RFHHFR+G CSCGDYW
Sbjct: 705 YGRVIIVRDRNRFHHFREGYCSCGDYW 731



 Score =  166 bits (421), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 119/482 (24%), Positives = 212/482 (43%), Gaps = 91/482 (18%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
           + L + +H  ++  G      + N L+ +Y +   + YAR +FD++ + D+V+ +T    
Sbjct: 140 TQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWST---- 195

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
                                        MI + S N     A+EL R+M    V+P   
Sbjct: 196 -----------------------------MIRSLSRNKEFDMALELIREMNFMQVRPSEV 226

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSV--LNALISVYVKCVSSPFVSSRS 208
              S+++  A      +    MH  V+++       V    AL+ +Y KC          
Sbjct: 227 AMVSMVNLFA-DTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKC---------G 276

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
            +G AR++F+ + ++  +SWT M+ G ++++ L+ AR   D       + W A++S Y  
Sbjct: 277 HLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQ 336

Query: 269 REL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                       +M    ++  + T  S++S CA +G   LGK VH+Y+     K   E 
Sbjct: 337 ANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYI----DKERVEV 392

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
              +N ALV +Y KCG +N A  +F +   RD+  WNAI++                   
Sbjct: 393 DCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIIT------------------- 433

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
                       G A +GYGEE L +F++M  +G KP D  F G + +C+  G +  G++
Sbjct: 434 ------------GFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKK 481

Query: 440 LHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQH 497
           L  ++VH+ G    +     ++ +  R G+++ A+ +  +MP   +++ W A++AA   H
Sbjct: 482 LFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLH 541

Query: 498 GN 499
            N
Sbjct: 542 KN 543


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 277/717 (38%), Positives = 399/717 (55%), Gaps = 74/717 (10%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+     L+  YS    ++ AR +F+   ++ RD V +N M+  Y        A +LF +
Sbjct: 217 DVFVSGALVNIYSKCGRMRDARLLFDW--MRERDVVLWNMMLKGYVQLGLEKEAFQLFSE 274

Query: 140 MRRDDVKPDNFTFTSVLSA-LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
             R  ++PD F+   +L+  L    ++ +   Q+H   VKSG     SV N+L+++Y K 
Sbjct: 275 FHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKM 334

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
             + F         AR VF++M   D +SW +M++          A+  L+  S N    
Sbjct: 335 GCAYF---------AREVFNDMKHLDLISWNSMISS--------CAQSSLEEESVN---- 373

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVI-----SACANSGLFRLGKQVHAYLLRTEA 313
              L    +H  LK        D FT  S+       AC    L   GKQ+HA+ +    
Sbjct: 374 ---LFIDLLHEGLKP-------DHFTLASITLATAAKACGCLVLLDQGKQIHAHAI---- 419

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
           K   +  L VN+ ++ +Y KCG +  A  +FN                Y+SA        
Sbjct: 420 KAGFDSDLHVNSGILDMYIKCGDMVNAGIVFN----------------YISAP------- 456

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
                   + ++WT MISG   NG  ++ L+++ +MR     P +Y FA  I + + + A
Sbjct: 457 --------DDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTA 508

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
           LE GRQLHA ++     S    G +L+ MYA+CG +E A  +F  M   +   WNAM+  
Sbjct: 509 LEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVG 568

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
           L QHGN   A+ L++ M   GI PDR++F+ +LSAC+HAGL  E   Y  +M   YGI P
Sbjct: 569 LAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEP 628

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
             +HY+  +D L RAG   EA  VI+++PFK SA I  ALL  CRI G+++ G + A +L
Sbjct: 629 EIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARL 688

Query: 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVD 673
           F L P  +  YVLLSN+YA   RWDD    RK+M+ + VKK+PG SWI+V N +H+F+VD
Sbjct: 689 FALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVD 748

Query: 674 DTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLM 733
           D +HP+A  +Y  +E+++  +R+ GYVPDT+FVL D+E ++KE +L  HSEKLA+A+GL+
Sbjct: 749 DRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLI 808

Query: 734 KLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             P   T+RV+KNLR+CGDCHNA K++SKV  REIV+RD  RFHHFRDG CSCGDYW
Sbjct: 809 STPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 865



 Score =  190 bits (483), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 158/598 (26%), Positives = 250/598 (41%), Gaps = 112/598 (18%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L +  HA ++ SG      + N L+ +Y K   L  AR +FD  P+ D+V    ++ AY+
Sbjct: 95  LGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYA 154

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
           AS +                            S++ N    + LFR +R         T 
Sbjct: 155 ASVD----------------------------SNDGNAQEGLHLFRLLRASLGSTTRMTL 186

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
             VL  L L          +H   +K G      V  AL+++Y KC           M  
Sbjct: 187 APVLK-LCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKC---------GRMRD 236

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           AR +FD M ERD + W  M+ GYV+   L   +E     SE              HR   
Sbjct: 237 ARLLFDWMRERDVVLWNMMLKGYVQ---LGLEKEAFQLFSE-------------FHRS-- 278

Query: 273 MLMLRIQLDEFTYTSVISACANSGL--FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
                ++ DEF+   +++ C  +G     LGKQVH        K   +  + V N+LV +
Sbjct: 279 ----GLRPDEFSVQLILNGCLWAGTDDLELGKQVHG----IAVKSGLDSDVSVANSLVNM 330

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y K G    AR++FN M   DL+SWN++                               I
Sbjct: 331 YSKMGCAYFAREVFNDMKHLDLISWNSM-------------------------------I 359

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG-----AITSCAGLGALENGRQLHAQLV 445
           S  AQ+   EE + LF  +  EG KP  +  A      A  +C  L  L+ G+Q+HA  +
Sbjct: 360 SSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAI 419

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIE 505
            +G+DS L   + ++ MY +CG +  A  VFN +   D V+W +MI+    +GN  +A+ 
Sbjct: 420 KAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALR 479

Query: 506 LYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY--ARFID 563
           +Y +M +  ++PD  TF T++ A +    +++GR+    +     +    D +     +D
Sbjct: 480 IYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANV---IKLDCVSDPFVGTSLVD 536

Query: 564 LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621
           +  + G   +A  +   +  +  A +W A+L G   HGN     + A  LF+ M  H 
Sbjct: 537 MYAKCGNIEDAYRLFKKMNVRNIA-LWNAMLVGLAQHGN----AEEAVNLFKSMKSHG 589



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 144/527 (27%), Positives = 230/527 (43%), Gaps = 114/527 (21%)

Query: 173 HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMM 232
           H  +V SG+     + N L+++Y KC S         + +AR+VFD  PERD ++W  ++
Sbjct: 100 HARIVVSGSAGDHFLSNNLLTMYSKCGS---------LSSARQVFDTTPERDLVTWNAIL 150

Query: 233 TGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISAC 292
             Y       A+ +  DG ++  G+    L+   +    +M          T   V+  C
Sbjct: 151 GAYA------ASVDSNDGNAQE-GLHLFRLLRASLGSTTRM----------TLAPVLKLC 193

Query: 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL 352
            NSG     + VH Y +    K   E+ + V+ ALV +Y KCG++ +AR +F+ M ERD+
Sbjct: 194 LNSGCLWAAEGVHGYAI----KIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDV 249

Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
           V WN +L  YV  GL  EA                                +LFS+    
Sbjct: 250 VLWNMMLKGYVQLGLEKEA-------------------------------FQLFSEFHRS 278

Query: 413 GFKPCDYAFAGAITSC--AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
           G +P +++    +  C  AG   LE G+Q+H   V SG DS +S  N+L+ MY++ G   
Sbjct: 279 GLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAY 338

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-----ITFLTV 525
            A  VFN M ++D +SWN+MI++  Q      ++ L+  +L EG+ PD      IT  T 
Sbjct: 339 FAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATA 398

Query: 526 LSACNHAGLVKEGRRYFETMHGPYGIPPGEDH----YARFIDLLCRAGKFSEAKDVIDSL 581
             AC    L+ +G++    +H  + I  G D      +  +D+  + G    A  V + +
Sbjct: 399 AKACGCLVLLDQGKQ----IHA-HAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYI 453

Query: 582 PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ--LMPH-------------------- 619
              P    W ++++GC  +GN D  ++   ++ Q  +MP                     
Sbjct: 454 S-APDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQG 512

Query: 620 ---HAGTYVL-----------LSNMYANLGRWDDAARVRKLMRDRGV 652
              HA    L           L +MYA  G  +DA R+ K M  R +
Sbjct: 513 RQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNI 559



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 134/340 (39%), Gaps = 69/340 (20%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +HAH I +GF    H+ + ++D+Y K   +V A  +F+ I  PD VA T+       
Sbjct: 411 GKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTS------- 463

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                                     MI+    N N   A+ ++  MR+  V PD +TF 
Sbjct: 464 --------------------------MISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFA 497

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           +++ A + +   E Q  Q+H  V+K        V  +L+ +Y KC +         +  A
Sbjct: 498 TLIKASSCVTALE-QGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGN---------IEDA 547

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
            R+F +M  R+   W  M+ G  ++   + A      M  +                   
Sbjct: 548 YRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSH------------------- 588

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
               I+ D  ++  ++SAC+++G   L  + + YL         E  +   + LV    +
Sbjct: 589 ---GIEPDRVSFIGILSACSHAG---LTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGR 642

Query: 334 CGKVNEARDIFNQMPERDLVSWN-AILSAYVSAGLIDEAK 372
            G V EA  +   MP +   S N A+L A    G ++  K
Sbjct: 643 AGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGK 682


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 278/758 (36%), Positives = 412/758 (54%), Gaps = 101/758 (13%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +HA +I +G+ P   + N L+++Y K  +L +A  LFD +PQ               
Sbjct: 24  GKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQ--------------- 68

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                             R+ V + AMI+  S NS    AI  F  MR     P  F F+
Sbjct: 69  ------------------RNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFS 110

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           S + A A +   E    QMHC  +K G G    V + L  +Y KC           M  A
Sbjct: 111 SAIRACASLGSIEMG-KQMHCLALKFGIGSELFVGSNLEDMYSKC---------GAMFDA 160

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
            +VF+EMP +DE+SWT M+ GY K                 +G    AL++       KM
Sbjct: 161 CKVFEEMPCKDEVSWTAMIDGYSK-----------------IGEFEEALLAFK-----KM 198

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
           +   + +D+    S + AC      + G+ VH+                   ++V L + 
Sbjct: 199 IDEEVTIDQHVLCSTLGACGALKACKFGRSVHS-------------------SVVKLGF- 238

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE-RNLLSWTVMISG 392
                          E D+   NA+   Y  AG ++ A ++F    E RN++S+T +I G
Sbjct: 239 ---------------ESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDG 283

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
             +    E+GL +F ++R +G +P ++ F+  I +CA   ALE G QLHAQ++   +D  
Sbjct: 284 YVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDED 343

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
               + L+ MY +CG++E A   F+ + +   ++WN++++  GQHG G  AI+++E+M+ 
Sbjct: 344 PFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVD 403

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
            G+ P+ ITF+++L+ C+HAGLV+EG  YF +M   YG+ PGE+HY+  IDLL RAG+  
Sbjct: 404 RGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLK 463

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632
           EAK+ I+ +PF+P+A  W + L  CRIHG+ ++G  AAE+L +L P ++G  VLLSN+YA
Sbjct: 464 EAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYA 523

Query: 633 NLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVL 692
           N  +W+D   VR  MRD  VKK PG SW++V  K HVF  +D +HP   A+Y+ L+ L+ 
Sbjct: 524 NERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLD 583

Query: 693 EMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGD 752
           +++  GYVP T  V  DM+   KE  L  HSE++AVAF L+ +P G  + V KNLR+C D
Sbjct: 584 QIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVD 643

Query: 753 CHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           CH+A KF+SKV GR+I+VRD  RFHHF DG CSCGDYW
Sbjct: 644 CHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/265 (33%), Positives = 126/265 (47%), Gaps = 38/265 (14%)

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
           MLR   D      VI   A +   R GKQ+HA L+     P    +    N LV +Y KC
Sbjct: 1   MLR---DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLT----NHLVNMYSKC 53

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
           G+++ A  +F+ MP+R+LVSW                               T MISGL+
Sbjct: 54  GELDHALKLFDTMPQRNLVSW-------------------------------TAMISGLS 82

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
           QN    E ++ F  MR+ G  P  +AF+ AI +CA LG++E G+Q+H   +  G  S L 
Sbjct: 83  QNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELF 142

Query: 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
            G+ L  MY++CG +  A  VF  MP  D VSW AMI    + G    A+  +++M+ E 
Sbjct: 143 VGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEE 202

Query: 515 ILPDRITFLTVLSACNHAGLVKEGR 539
           +  D+    + L AC      K GR
Sbjct: 203 VTIDQHVLCSTLGACGALKACKFGR 227



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 2/177 (1%)

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
           A A  I + A    L  G+QLHA L+ +GY       N L+ MY++CG ++ A  +F+TM
Sbjct: 7   ALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTM 66

Query: 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
           P  + VSW AMI+ L Q+   + AI  +  M   G +P +  F + + AC   G ++ G+
Sbjct: 67  PQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGK 126

Query: 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           +    +   +GI       +   D+  + G   +A  V + +P K     W A++ G
Sbjct: 127 Q-MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVS-WTAMIDG 181


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 276/726 (38%), Positives = 409/726 (56%), Gaps = 62/726 (8%)

Query: 81  IVARTTLI--AAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFR 138
           + A++ LI   A S S ++  A  +F+    +  +   +N +I A+S      +++ LF 
Sbjct: 57  LFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFS 116

Query: 139 DMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
            M    + P++ TF S+  + A   +   +  Q+H   +K    L   V  +LI +Y   
Sbjct: 117 QMLHSGLYPNSHTFPSLFKSCAK-SKATHEAKQLHAHALKLALHLHPHVHTSLIHMY--- 172

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
                 S    +  AR VFD+   RD +S+T ++TGYV   ++D AR   D +     V+
Sbjct: 173 ------SQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVS 226

Query: 259 WNALISGYVH----RELKMLMLRIQ-----LDEFTYTSVISACANSGLFRLGKQVHAYLL 309
           WNA+I+GYV      E      R+Q      ++ T  SV+SAC +     LGK + +++ 
Sbjct: 227 WNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVR 286

Query: 310 -RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
            R   K     +L + NALV +Y KCG+                               I
Sbjct: 287 DRGFGK-----NLQLVNALVDMYSKCGE-------------------------------I 310

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
             A+ LF+ M +++++ W  MI G       EE L LF  M  E   P D  F   + +C
Sbjct: 311 GTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPAC 370

Query: 429 AGLGALENGRQLHA----QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           A LGAL+ G+ +HA     L  +G  +++S   ++I MYA+CG VE A  VF +M +   
Sbjct: 371 ASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSL 430

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
            SWNAMI+ L  +G+  RA+ L+E+M+ EG  PD ITF+ VLSAC  AG V+ G RYF +
Sbjct: 431 ASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSS 490

Query: 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
           M+  YGI P   HY   IDLL R+GKF EAK ++ ++  +P   IW +LL  CRIHG ++
Sbjct: 491 MNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVE 550

Query: 605 LGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVD 664
            G   AE+LF+L P ++G YVLLSN+YA  GRWDD A++R  + D+G+KK PGC+ IE+D
Sbjct: 551 FGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEID 610

Query: 665 NKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSE 724
             VH FLV D  HP+++ +++ L+++   + + G+VPDT  VL+DM+ + KE AL+ HSE
Sbjct: 611 GVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFVPDTSEVLYDMDEEWKEGALTQHSE 670

Query: 725 KLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKC 784
           KLA+AFGL+    G+T+R++KNLR+C +CH+A K +SK+  REI+ RD  RFHHF+DG C
Sbjct: 671 KLAIAFGLISTKPGSTIRIVKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGFC 730

Query: 785 SCGDYW 790
           SC D W
Sbjct: 731 SCNDRW 736



 Score =  179 bits (454), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 131/468 (27%), Positives = 203/468 (43%), Gaps = 67/468 (14%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           A+ +HAH +        H+   LI +Y +  +L +AR +FD+    D V+ T LI  Y +
Sbjct: 146 AKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVS 205

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
             +V  AR +F++ P K  D V +NAMI  Y  +     A+  F  M+  DV P+  T  
Sbjct: 206 EGHVDDARRLFDEIPAK--DVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMV 263

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           SVLSA   +   E     +   V   G G    ++NAL+ +Y KC           +G A
Sbjct: 264 SVLSACGHLRSLELG-KWIGSWVRDRGFGKNLQLVNALVDMYSKCGE---------IGTA 313

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           R++FD M ++D + W TM+ GY      + A    +                       M
Sbjct: 314 RKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFE----------------------VM 351

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
           L   +  ++ T+ +V+ ACA+ G   LGK VHAY+ +         ++ +  +++ +Y K
Sbjct: 352 LRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAK 411

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
           CG V  A  +F  M  R L SWNA++S                               GL
Sbjct: 412 CGCVEVAEQVFRSMGSRSLASWNAMIS-------------------------------GL 440

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSS 452
           A NG+ E  L LF +M  EGF+P D  F G +++C   G +E G +  + +    G    
Sbjct: 441 AMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPK 500

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
           L     +I + AR G  + A  +   M    D   W +++ A   HG 
Sbjct: 501 LQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQ 548


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 253/620 (40%), Positives = 364/620 (58%), Gaps = 33/620 (5%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           Q H  +++ G       +  +I     C     +S    +  A  VFD++P  D   + T
Sbjct: 38  QYHSQIIRLGLSADNDAMGRVIKF---CA----ISKSGDLNYALEVFDKIPHPDAYIYNT 90

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           +  GY++                     W  L    +    +ML   +  ++FTY  +I 
Sbjct: 91  IFRGYLR---------------------WQ-LARNCIFMYSRMLHKSVSPNKFTYPPLIR 128

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           AC        GKQ+HA++L+        FSL   N L+ +Y     + +AR +F+ MP+R
Sbjct: 129 ACCIDYAIEEGKQIHAHVLKF-GFGADGFSL---NNLIHMYVNFQSLEQARRVFDNMPQR 184

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           D+VSW ++++ Y   G +D+A+ +FE M ERN +SW  MI+   Q+    E   LF +MR
Sbjct: 185 DVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMR 244

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
           LE      +  A  +++C GLGALE G+ +H  +  SG +        +I MY +CG +E
Sbjct: 245 LENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLE 304

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
            A+ VFN +P     SWN MI  L  HG G  AIEL+++M +E + PD ITF+ VLSAC 
Sbjct: 305 KASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACA 364

Query: 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590
           H+GLV+EG+ YF+ M    G+ PG +H+   +DLL RAG   EA+ +I+ +P  P A + 
Sbjct: 365 HSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVL 424

Query: 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650
            AL+  CRIHGN +LG Q  +++ +L PH++G YVLL+N+YA+ GRW+D A+VRKLM DR
Sbjct: 425 GALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDR 484

Query: 651 GVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDM 710
           GVKK PG S IE ++ V  F+    AHP+A+ +Y  L++++  +R +GYVPDT  VLHD+
Sbjct: 485 GVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDI 544

Query: 711 ESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVV 770
           + ++KE  L  HSEKLA+AFGL+K   G T+R+ KNLRIC DCH A K +SKV  REI++
Sbjct: 545 DEEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIII 604

Query: 771 RDGKRFHHFRDGKCSCGDYW 790
           RD  RFHHFR G CSC DYW
Sbjct: 605 RDRNRFHHFRMGGCSCKDYW 624



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 132/449 (29%), Positives = 205/449 (45%), Gaps = 66/449 (14%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D + R     A S S ++  A E+F+K P    D   YN +   Y         I ++  
Sbjct: 53  DAMGRVIKFCAISKSGDLNYALEVFDKIP--HPDAYIYNTIFRGYLRWQLARNCIFMYSR 110

Query: 140 MRRDDVKPDNFTFTSVLSALAL--IVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           M    V P+ FT+  ++ A  +   +EE KQ   +H  V+K G G     LN LI +YV 
Sbjct: 111 MLHKSVSPNKFTYPPLIRACCIDYAIEEGKQ---IHAHVLKFGFGADGFSLNNLIHMYVN 167

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
             S         +  ARRVFD MP+RD +SWT+++TGY +  ++D ARE  + M E   V
Sbjct: 168 FQS---------LEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSV 218

Query: 258 AWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
           +WNA+I+ YV             +M +  + LD+F   S++SAC   G    GK +H Y+
Sbjct: 219 SWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYI 278

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
                K   E    +   ++ +Y KCG + +A ++FN++P++ + SWN            
Sbjct: 279 ----EKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNC----------- 323

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
                               MI GLA +G GE  ++LF +M  E   P    F   +++C
Sbjct: 324 --------------------MIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSAC 363

Query: 429 AGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVS 486
           A  G +E G+     +    G    +     ++ +  R G++E A  + N MP N D+  
Sbjct: 364 AHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGV 423

Query: 487 WNAMIAALGQHGNGARAIELYEQMLKEGI 515
             A++ A   HGN     EL EQ+ K+ I
Sbjct: 424 LGALVGACRIHGN----TELGEQIGKKVI 448



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 148/316 (46%), Gaps = 39/316 (12%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +HAH++  GF      +N LI +Y     L  AR +FD +PQ D+V+ T+LI  YS 
Sbjct: 139 GKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQ 198

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
              V  ARE+F   P   R++V +NAMI AY  ++  H A  LF  MR ++V  D F   
Sbjct: 199 WGFVDKAREVFELMP--ERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAA 256

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           S+LSA   +   E Q   +H  + KSG  L + +   +I +Y KC           +  A
Sbjct: 257 SMLSACTGLGALE-QGKWIHGYIEKSGIELDSKLATTVIDMYCKC---------GCLEKA 306

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
             VF+E+P++   SW  M+ G   +   +AA E    M                 RE+  
Sbjct: 307 SEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEME----------------REM-- 348

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVTLYW 332
               +  D  T+ +V+SACA+SGL   GK    Y+      KP  E        +V L  
Sbjct: 349 ----VAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHF----GCMVDLLG 400

Query: 333 KCGKVNEARDIFNQMP 348
           + G + EAR + N+MP
Sbjct: 401 RAGLLEEARKLINEMP 416


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 282/767 (36%), Positives = 418/767 (54%), Gaps = 89/767 (11%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDI--YCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           + +HAH+I +G       +++LI+     +S  + YA +LF+ I +P++           
Sbjct: 46  KQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLF---------- 95

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                   +N+MI   S + +   A+  F  M    V+P+++TF
Sbjct: 96  -----------------------IWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTF 132

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
             +L + A +     +  Q+H  V+K G      +  +LI++Y +            M  
Sbjct: 133 PFLLKSCAKLASAH-EGKQIHAHVLKLGFVSDVFIHTSLINMYAQ---------SGEMNN 182

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH--RE 270
           A+ VFD+   RD +S+T ++ GY    Y+D AR+  D M     V+WNA+I+GY    R 
Sbjct: 183 AQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRS 242

Query: 271 LKMLML-------RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
            + L+L        +  +E T  SV+SACA S    LG  + +++   E +     +L +
Sbjct: 243 KEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWI---EDRGLCS-NLKL 298

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
            NAL+ +Y KCG                                +  A+ LF+ M ER++
Sbjct: 299 VNALIDMYSKCGD-------------------------------LQTARELFDDMLERDV 327

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
           +SW VMI G       +E L LF +M   G +P +  F   + SCA LGA++ G+ +HA 
Sbjct: 328 ISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAY 387

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
           +  +    S S   +LI +YA+CG + AA  VF+ M      SWNAMI  L  HG   +A
Sbjct: 388 INKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKA 447

Query: 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563
            EL+ +M  +GI P+ ITF+ +LSAC HAGLV  G+++F +M   Y I P   HY   ID
Sbjct: 448 FELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMID 507

Query: 564 LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623
           LL RAG F EA+ ++ ++  KP   IW +LL  CR HG ++LG   AE+LF+L P + G 
Sbjct: 508 LLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGA 567

Query: 624 YVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAV 683
           YVLLSN+YA  G+WDD AR+R  + DRG+KK PGC+ IEVDN VH FLV D  HP+++ +
Sbjct: 568 YVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDI 627

Query: 684 YKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRV 743
           Y+ LE++  +++  G+V DT  VL+DM+ + KE ALS HSEKLA+AFGL+    G  +R+
Sbjct: 628 YRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKEGALSHHSEKLAIAFGLISTKPGTPIRI 687

Query: 744 LKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +KNLR+C +CH+A K +SK+  REI+ RD  RFHHF+DG CSC DYW
Sbjct: 688 IKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCNDYW 734



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 153/366 (41%), Gaps = 79/366 (21%)

Query: 18  SQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP 77
           S L  C   N +   L  S+ + +   G      ++N LID+Y K   L  AR LFD++ 
Sbjct: 266 SVLSACAQSNAL--DLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDML 323

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + D+++                                 +N MI  Y+H  +   A+ LF
Sbjct: 324 ERDVIS---------------------------------WNVMIGGYTHMCSYKEALALF 350

Query: 138 RDMRRDDVKPDNFTFTSVLSALALI--VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           R+M    V+P   TF S+L + A +  ++  K    +H  + K+   + TS+  +LI +Y
Sbjct: 351 REMLASGVEPTEITFLSILPSCAHLGAIDLGK---WIHAYINKNFNSVSTSLSTSLIDLY 407

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            KC +         + AAR+VFD M  +   SW  M+ G   +   D A E    MS + 
Sbjct: 408 AKCGN---------IVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSD- 457

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                                 I+ +E T+  ++SAC ++GL  LG+Q  + +++ + K 
Sbjct: 458 ---------------------GIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQ-DYKI 495

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSAYVSAGLID----E 370
           +P+        ++ L  + G   EA  +   M  + D   W ++L A    G ++     
Sbjct: 496 SPKSQH--YGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELV 553

Query: 371 AKSLFE 376
           A+ LFE
Sbjct: 554 AERLFE 559


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 282/763 (36%), Positives = 422/763 (55%), Gaps = 74/763 (9%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            +S+HA  + S      ++ N  +++Y K  +L YAR  F    +P++ +   ++ AY+ 
Sbjct: 27  GKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKAYAK 86

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
              + +AR++F++ P    DTV YN +I+ Y+      AA+ LF+ MR+   + D FT +
Sbjct: 87  DSKIHIARQLFDEIP--QPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLS 144

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
            +++A    V+  KQ   +HC  V  G   ++SV NA ++ Y         S   L+  A
Sbjct: 145 GLIAACCDRVDLIKQ---LHCFSVSGGFDSYSSVNNAFVTYY---------SKGGLLREA 192

Query: 214 RRVFDEMPE-RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
             VF  M E RDE+SW +M+  Y    + + A+                     +++E  
Sbjct: 193 VSVFYGMDELRDEVSWNSMIVAY--GQHKEGAKALA------------------LYKE-- 230

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           M+    ++D FT  SV++A  +      G+Q H  L++            V + L+  Y 
Sbjct: 231 MIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSH----VGSGLIDFYS 286

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           KCG  +                           G+ D  K +F+ +   +L+ W  MISG
Sbjct: 287 KCGGCD---------------------------GMYDSEK-VFQEILSPDLVVWNTMISG 318

Query: 393 LAQNG-YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
            + N    EE +K F QM+  G +P D +F    ++C+ L +    +Q+H   + S   S
Sbjct: 319 YSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPS 378

Query: 452 S-LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
           + +S  NALI++Y + G ++ A  VF+ MP +++VS+N MI    QHG+G  A+ LY++M
Sbjct: 379 NRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRM 438

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
           L  GI P++ITF+ VLSAC H G V EG+ YF TM   + I P  +HY+  IDLL RAGK
Sbjct: 439 LDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGK 498

Query: 571 FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630
             EA+  ID++P+KP +  W ALL  CR H N+ L  +AA +L  + P  A  YV+L+NM
Sbjct: 499 LEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANM 558

Query: 631 YANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQL 690
           YA+  +W++ A VRK MR + ++K+PGCSWIEV  K HVF+ +D +HP  + V +YLE++
Sbjct: 559 YADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEM 618

Query: 691 VLEMRKLGYVPDTKFVL---HDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNL 747
           + +M+K+GYV D K+ +    +     +E  L  HSEKLAVAFGLM    G  + V+KNL
Sbjct: 619 MKKMKKVGYVMDKKWAMVKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEELVVVKNL 678

Query: 748 RICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           RICGDCHNA KFMS V GREI+VRD  RFH F+DGKCSCGDYW
Sbjct: 679 RICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721



 Score =  135 bits (340), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 164/336 (48%), Gaps = 21/336 (6%)

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           ++ + A   LF  GK +HA  +++    +   S    N  V LY KCG+++ AR  F   
Sbjct: 15  LLKSVAERDLF-TGKSLHALYVKSIVASSTYLS----NHFVNLYSKCGRLSYARAAFYST 69

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
            E ++ S+N I+ AY     I  A+ LF+ + + + +S+  +ISG A        + LF 
Sbjct: 70  EEPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFK 129

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467
           +MR  GF+   +  +G I +C     ++  +QLH   V  G+DS  S  NA +T Y++ G
Sbjct: 130 RMRKLGFEVDGFTLSGLIAACC--DRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGG 187

Query: 468 VVEAANCVFNTMPNV-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           ++  A  VF  M  + D VSWN+MI A GQH  GA+A+ LY++M+ +G   D  T  +VL
Sbjct: 188 LLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVL 247

Query: 527 SACNHAGLVKEGRRYFETMHGPY---GIPPGEDHYARFIDLLCRAG---KFSEAKDVIDS 580
           +A      +  GR++    HG     G        +  ID   + G      +++ V   
Sbjct: 248 NALTSLDHLIGGRQF----HGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQE 303

Query: 581 LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           +   P   +W  +++G  +  N +L  +A +   Q+
Sbjct: 304 I-LSPDLVVWNTMISGYSM--NEELSEEAVKSFRQM 336


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 272/698 (38%), Positives = 400/698 (57%), Gaps = 45/698 (6%)

Query: 11  TLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYAR 70
           T ++ +A  L LC      +S  ARSVH  +I + F     I NRLID+Y K   L YAR
Sbjct: 22  TDSSPFAKLLDLCVKLR--SSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYAR 79

Query: 71  TLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNG 130
            +FD + + ++ +  ++I+       V  +  +F+  P K  D   +N+MI  ++ +   
Sbjct: 80  KVFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEK--DQCSWNSMIAGFAQHDRF 137

Query: 131 HAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNA 190
             A++ F  M RDD   ++++F S LSA + + ++ K   Q+H  + KS   L   + + 
Sbjct: 138 EEALDWFVRMHRDDFVLNDYSFGSGLSACSRL-KDLKLGAQIHGLISKSKYSLDVFMGSG 196

Query: 191 LISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDG 250
           LI  Y KC          L+G ARRVFD M E++ +SW  ++T Y +N     A E    
Sbjct: 197 LIDFYSKC---------GLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGR 247

Query: 251 MSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
           M+E                      L  + DE T  SV+SACA    F+ G Q+HA +++
Sbjct: 248 MTE----------------------LGFKPDEVTLASVVSACATLAAFKEGVQIHARVVK 285

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
           ++        L + NALV +Y KCG+VNEAR +F++MP R+ VS   ++S Y  +  +  
Sbjct: 286 SDKFRN---DLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKA 342

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
           A+S+F  +++++++SW  +I+G  QNG  EE L LF  ++ E   P  Y F   + + A 
Sbjct: 343 ARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASAN 402

Query: 431 LGALENGRQLHAQLV------HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           L  LE GRQ H+ +V       SG +  +  GN+LI MY +CG VE    VF  M   D 
Sbjct: 403 LADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDH 462

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
           VSWN MI    Q+G G  A+EL+++ML+ G  PD +T +  L AC+HAGLV+EGRRYF +
Sbjct: 463 VSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFS 522

Query: 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
           M   +G+ P +DHY   +DLL RAG   EAKD+I+S+P +P A +W +LL+ C++H NI 
Sbjct: 523 MTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNIT 582

Query: 605 LGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVD 664
           LG   AE++F++ P  +G YVLL+NMY+ LGRW DA  VRKLMR RGV K+PGCSWI++ 
Sbjct: 583 LGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVKQPGCSWIDIQ 642

Query: 665 NKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPD 702
           + VHVF+V D  HP+ + +Y  L+ L   MR+ GYVPD
Sbjct: 643 SNVHVFMVKDKRHPQKKEIYSILKLLTKHMRQAGYVPD 680


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 247/681 (36%), Positives = 398/681 (58%), Gaps = 36/681 (5%)

Query: 113 DTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQM 172
           +   +N++I A +HN     A+ L+ + +R  ++PD +TF SV++A A +++ E     +
Sbjct: 79  NVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFE-MAKSI 137

Query: 173 HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMM 232
           H  V+  G G    + NALI +Y +          + +  AR+VF+EMP RD +SW +++
Sbjct: 138 HDRVLDMGFGSDLYIGNALIDMYCR---------FNDLDKARKVFEEMPLRDVVSWNSLI 188

Query: 233 TGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRI---QLDEFTYTSVI 289
           +GY  N Y                  WN  +  Y ++ +K+ M  +   + D  T TS++
Sbjct: 189 SGYNANGY------------------WNEALEIY-YQSIKLFMEMVNQFKPDLLTITSIL 229

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
            AC + G    GK VH Y++ +      E     +N L+ +Y KCG +  ++++F+ M  
Sbjct: 230 QACGHLGDLEFGKYVHDYMITSGY----ECDTTASNILINMYAKCGNLLASQEVFSGMKC 285

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
           +D VSWN++++ Y+  G + ++  +FE M+ R++++W  +I+    +     GL++ S+M
Sbjct: 286 KDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRM 345

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
           R EG  P        +  C+ L A   G+++H  +   G +S +  GN LI MY++CG +
Sbjct: 346 RTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSL 405

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
             +  VF  M   D V+W A+I+A G +G G +A+  + +M   GI+PD + F+ ++ AC
Sbjct: 406 RNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFAC 465

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
           +H+GLV+EG  YF  M   Y I P  +HYA  +DLL R+    +A+D I S+P KP + I
Sbjct: 466 SHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSI 525

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
           W ALL+ CR+ G+ ++  + +E++ +L P   G YVL+SN+YA LG+WD    +RK ++ 
Sbjct: 526 WGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKA 585

Query: 650 RGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHD 709
           RG+KK+PGCSW+E+ NKV+VF        + + V K L  L   M K GY+ + +FVLHD
Sbjct: 586 RGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHD 645

Query: 710 MESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIV 769
           ++ D+K   L  HSE+LA+AFGL+    G  ++V+KNLR+C DCH   K++SK+V RE++
Sbjct: 646 IDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRELL 705

Query: 770 VRDGKRFHHFRDGKCSCGDYW 790
           VRD  RFH F+DG CSCGDYW
Sbjct: 706 VRDANRFHVFKDGACSCGDYW 726



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 124/506 (24%), Positives = 224/506 (44%), Gaps = 85/506 (16%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           +A+S+H  ++  GF    +I N LID+YC+   L  AR +F+E+P  D+V+  +LI+ Y+
Sbjct: 133 MAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYN 192

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
           A+                     ++N  +  Y      + +I+LF +M  +  KPD  T 
Sbjct: 193 ANG--------------------YWNEALEIY------YQSIKLFMEM-VNQFKPDLLTI 225

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
           TS+L A   + + E     +H  ++ SG    T+  N LI++Y KC +         + A
Sbjct: 226 TSILQACGHLGDLEFG-KYVHDYMITSGYECDTTASNILINMYAKCGN---------LLA 275

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           ++ VF  M  +D +SW +M+  Y++N  +  + +  + M     + WN +I+  VH E  
Sbjct: 276 SQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDC 335

Query: 273 MLMLR---------IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
            L LR         +  D  T  S++  C+     R GK++H  +     K   E  +PV
Sbjct: 336 NLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIF----KLGLESDVPV 391

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
            N L+ +Y KCG +  +  +F  M  +D+V+W A++SA                      
Sbjct: 392 GNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISA---------------------- 429

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG-RQLHA 442
                        G G++ ++ F +M   G  P   AF   I +C+  G +E G    H 
Sbjct: 430 ---------CGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHR 480

Query: 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGA 501
                  +  +     ++ + +R  +++ A     +MP   DS  W A+++A    G+  
Sbjct: 481 MKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTE 540

Query: 502 RAIELYEQMLKEGILPDRITFLTVLS 527
            A  + E++++  + PD   +  ++S
Sbjct: 541 IAERVSERIIE--LNPDDTGYYVLVS 564


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 271/749 (36%), Positives = 409/749 (54%), Gaps = 82/749 (10%)

Query: 46  FKPREHIINRLID---IYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLARE 102
           F P       L+D   I+C   KL +         Q D+    +LI  YS    V +AR 
Sbjct: 178 FPPVLKACQTLVDGRKIHCWVFKLGF---------QWDVFVAASLIHMYSRFGFVGIARS 228

Query: 103 MFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALI 162
           +F+  P   RD   +NAMI+    N N   A+++  +MR + +  D+ T  S+L   A +
Sbjct: 229 LFDDMPF--RDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQL 286

Query: 163 VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE 222
            +     + +H  V+K G      V NALI++Y K  +         +G A++VF +M  
Sbjct: 287 GDISTATL-IHLYVIKHGLEFELFVSNALINMYAKFGN---------LGDAQKVFQQMFL 336

Query: 223 RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDE 282
           RD +SW +++  Y +ND    AR F                        KM +  ++ D 
Sbjct: 337 RDVVSWNSIIAAYEQNDDPVTARGFF----------------------FKMQLNGLEPDL 374

Query: 283 FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARD 342
            T  S+ S  A S  ++  + VH +++R                        G + EA  
Sbjct: 375 LTLVSLASIAAQSRDYKNSRSVHGFIMRR-----------------------GWLMEA-- 409

Query: 343 IFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG 402
                    +V  NA++  Y   G+ID A  +F  +  ++++SW  +ISG  QNG   E 
Sbjct: 410 ---------VVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEA 460

Query: 403 LKLFSQMR-LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALIT 461
           ++++  M      K     +   + + A +GAL+ G ++H  L+ +     +  G  LI 
Sbjct: 461 IEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLID 520

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           +Y +CG +  A C+F  +P   SV WNA+I+  G HG+G +A++L+ +M  EG+ PD +T
Sbjct: 521 LYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVT 580

Query: 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581
           F+++LSAC+H+GLV EG+ +F  M   YGI P   HY   +DLL RAG    A D I  +
Sbjct: 581 FISLLSACSHSGLVDEGKWFFHLMQ-EYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDM 639

Query: 582 PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAA 641
           P  P A IW ALL  CRIHGNI+LG  A+++LF++   + G YVLLSN+YAN+G+W+   
Sbjct: 640 PLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVD 699

Query: 642 RVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVP 701
           +VR L R+RG+KK PG S IEV+ +V +F   + +HP+ + +Y  L  L  +M+ LGY+P
Sbjct: 700 KVRSLARERGLKKTPGWSSIEVNRRVDIFYTGNQSHPKCKEIYAELRILTAKMKSLGYIP 759

Query: 702 DTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMS 761
           D  FVL D+E D+KE+ L++HSE+LA+AFG++  P  + +R+ KNLR+CGDCHNA KF+S
Sbjct: 760 DYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSAIRIFKNLRVCGDCHNATKFIS 819

Query: 762 KVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           ++  REIVVRD KRFHHF++G CSCGDYW
Sbjct: 820 RITEREIVVRDSKRFHHFKNGICSCGDYW 848



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 181/661 (27%), Positives = 303/661 (45%), Gaps = 115/661 (17%)

Query: 47  KPREHIINRLIDIYCKSL--KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMF 104
           K  E   N L D   K+L  K ++A  +     Q + ++   L+  Y++  +V L+R  F
Sbjct: 73  KNEEIDFNSLFDSCTKTLLAKRLHALLVVSGKIQSNFIS-IRLVNLYASLGDVSLSRGTF 131

Query: 105 NKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR-DDVKPDNFTFTSVLSALALIV 163
           ++  ++ +D   +N+MI+AY  N +   AI+ F  +      + D +TF  VL A   +V
Sbjct: 132 DQ--IQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLV 189

Query: 164 EEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER 223
           +  K    +HC V K G      V  +LI +Y         S    +G AR +FD+MP R
Sbjct: 190 DGRK----IHCWVFKLGFQWDVFVAASLIHMY---------SRFGFVGIARSLFDDMPFR 236

Query: 224 DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEF 283
           D  SW  M++G ++N     A + LD                      +M +  I +D  
Sbjct: 237 DMGSWNAMISGLIQNGNAAQALDVLD----------------------EMRLEGINMDSV 274

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
           T  S++  CA  G       +H Y++    K   EF L V+NAL+ +Y K G + +A+ +
Sbjct: 275 TVASILPVCAQLGDISTATLIHLYVI----KHGLEFELFVSNALINMYAKFGNLGDAQKV 330

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
           F QM  RD+VSWN+I++AY                                QN       
Sbjct: 331 FQQMFLRDVVSWNSIIAAY-------------------------------EQNDDPVTAR 359

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY-DSSLSAGNALITM 462
             F +M+L G +P         +  A     +N R +H  ++  G+   ++  GNA++ M
Sbjct: 360 GFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDM 419

Query: 463 YARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK-EGILPDRIT 521
           YA+ GV+++A+ VFN +P  D VSWN +I+   Q+G  + AIE+Y  M +   I  ++ T
Sbjct: 420 YAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGT 479

Query: 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF-----IDLLCRAGKFSEAKD 576
           ++++L+A  H G +++G R    +HG   +     H   F     IDL  + G+  +A  
Sbjct: 480 WVSILAAYAHVGALQQGMR----IHGH--LIKTNLHLDVFVGTCLIDLYGKCGRLVDAMC 533

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM------PHHAGTYVLLSNM 630
           +   +P + S P W A+++   IHG+     + A +LF+ M      P H  T++ L + 
Sbjct: 534 LFYQVPRESSVP-WNAIISCHGIHGH----GEKALKLFREMQDEGVKPDHV-TFISLLSA 587

Query: 631 YANLGRWDDAARVRKLMRDRGVK---KEPGC--------SWIEVDNKVHVFLVDDTAHPE 679
            ++ G  D+      LM++ G+K   K  GC         ++E+    + F+ D   HP+
Sbjct: 588 CSHSGLVDEGKWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLEM---AYDFIKDMPLHPD 644

Query: 680 A 680
           A
Sbjct: 645 A 645



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 120/485 (24%), Positives = 213/485 (43%), Gaps = 103/485 (21%)

Query: 17  ASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEI 76
           AS L +C     I++  A  +H ++I  G +    + N LI++Y K   L  A+ +F ++
Sbjct: 277 ASILPVCAQLGDIST--ATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQM 334

Query: 77  PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
              D+V+  ++IAAY  +D+   AR  F K                              
Sbjct: 335 FLRDVVSWNSIIAAYEQNDDPVTARGFFFK------------------------------ 364

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL-NALISVY 195
              M+ + ++PD  T  S L+++A    + K    +H  +++ G  +   V+ NA++ +Y
Sbjct: 365 ---MQLNGLEPDLLTLVS-LASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMY 420

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            K           ++ +A +VF+ +P +D +SW T+++GY +N     A E    M E  
Sbjct: 421 AKL---------GVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEEC- 470

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                        RE+K       L++ T+ S+++A A+ G  + G ++H +L++T    
Sbjct: 471 -------------REIK-------LNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNL-- 508

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
                + V   L+ LY KCG++ +A  +F Q+P    V WNAI+S +             
Sbjct: 509 --HLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCH------------- 553

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
                               +G+GE+ LKLF +M+ EG KP    F   +++C+  G ++
Sbjct: 554 ------------------GIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVD 595

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAAL 494
            G+     +   G   SL     ++ +  R G +E A      MP + D+  W A++ A 
Sbjct: 596 EGKWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGAC 655

Query: 495 GQHGN 499
             HGN
Sbjct: 656 RIHGN 660


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  493 bits (1270), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 261/715 (36%), Positives = 405/715 (56%), Gaps = 54/715 (7%)

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
            +N M+ AY  +++   A+ L++ M +++V PDN+T+  V+ A A+ + E     ++H  
Sbjct: 108 MWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGG-KEIHDH 166

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
           V+K G      V N LI++Y  C +         M  AR++FDE P  D +SW +++ GY
Sbjct: 167 VLKVGFDSDVYVQNTLINMYAVCGN---------MRDARKLFDESPVLDSVSWNSILAGY 217

Query: 236 VKNDYLDAAREFLDGM-------------------------------SENVGVAWNALIS 264
           VK   ++ A+   D M                                E   V+W+ALIS
Sbjct: 218 VKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALIS 277

Query: 265 GY----VHRELKMLMLRI-----QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           GY    ++ E  ++ + +     +LDE    SV+SACA+  + + GK +H  ++R     
Sbjct: 278 GYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGI-- 335

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
             E  + + NAL+ +Y   G++ +A+ +FN     D +SWN+++S  +  G +++A++LF
Sbjct: 336 --ESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALF 393

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
           + M E++++SW+ +ISG AQ+    E L LF +M+L   +P +      I++C  L AL+
Sbjct: 394 DVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALD 453

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            G+ +HA +  +G   ++  G  L+ MY +CG VE A  VFN M      SWNA+I  L 
Sbjct: 454 QGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLA 513

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
            +G   R+++++ +M   G++P+ ITF+ VL AC H GLV EGR +F +M   +GI P  
Sbjct: 514 VNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNV 573

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
            HY   +DLL RAG  +EA+ +I+S+P  P    W ALL  C+ HG+ ++G +   +L +
Sbjct: 574 KHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIE 633

Query: 616 LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
           L P H G +VLLSN++A+ G W+D   VR +M+ +GV K PGCS IE +  VH FL  D 
Sbjct: 634 LQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDK 693

Query: 676 AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKL 735
            HP    V   L ++   ++  GY PDT  V  D++ ++KE  L  HSEKLA+AFGL+ +
Sbjct: 694 THPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTI 753

Query: 736 PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
                +R++KNLRIC DCH A K +SK   REIVVRD  RFH+F++G CSC DYW
Sbjct: 754 SPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 808



 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 136/536 (25%), Positives = 244/536 (45%), Gaps = 91/536 (16%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +H H++  GF    ++ N LI++Y     +  AR LFDE P  D V+  +++A Y  
Sbjct: 160 GKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVK 219

Query: 94  SDNVKLAREMFNKTP-----------------------------LKMRDTVFYNAMITAY 124
             +V+ A+ +F++ P                             +  +D V ++A+I+ Y
Sbjct: 220 KGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGY 279

Query: 125 SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA--LIVEEEKQCMQMHCTVVKSGTG 182
             N     A+ +F +M  + ++ D     SVLSA A   IV+  K    +H  V++ G  
Sbjct: 280 EQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGK---MIHGLVIRMGIE 336

Query: 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLD 242
            + ++ NALI +Y         S    +  A+++F+     D++SW +M++G +K   ++
Sbjct: 337 SYVNLQNALIHMY---------SGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVE 387

Query: 243 AAREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACA 293
            AR   D M E   V+W+A+ISGY   +          +M + +I+ DE    SVISAC 
Sbjct: 388 KARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACT 447

Query: 294 NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV 353
           +      GK VHAY+ +   K     ++ +   L+ +Y KCG V  A ++FN M E+ + 
Sbjct: 448 HLAALDQGKWVHAYIRKNGLK----VNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVS 503

Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
           SWNA++      GL+                               E  L +FS+M+  G
Sbjct: 504 SWNALIIGLAVNGLV-------------------------------ERSLDMFSEMKNNG 532

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAA 472
             P +  F G + +C  +G ++ GR   A ++   G + ++     ++ +  R G++  A
Sbjct: 533 VIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEA 592

Query: 473 NCVFNTMPNV-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
             +  +MP   D  +W A++ A  +HG+      +  ++++  + PD   F  +LS
Sbjct: 593 EKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIE--LQPDHDGFHVLLS 646



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 118/466 (25%), Positives = 205/466 (43%), Gaps = 94/466 (20%)

Query: 201 SPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWN 260
           SPF+     +  + ++FD +   +   W TMM  Y++++  + A      M +N      
Sbjct: 86  SPFIG----LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKN------ 135

Query: 261 ALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
                            +  D +TY  V+ ACA   L   GK++H ++L    K   +  
Sbjct: 136 ----------------NVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVL----KVGFDSD 175

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           + V N L+ +Y  CG + +AR +F++ P  D VSWN+IL+ YV  G ++EAK +F+ M +
Sbjct: 176 VYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQ 235

Query: 381 RN-------------------------------LLSWTVMISGLAQNGYGEEGLKLFSQM 409
           RN                               ++SW+ +ISG  QNG  EE L +F +M
Sbjct: 236 RNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEM 295

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA----- 464
              G +  +      +++CA L  ++ G+ +H  ++  G +S ++  NALI MY+     
Sbjct: 296 NANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEI 355

Query: 465 --------------------------RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
                                     +CG VE A  +F+ MP  D VSW+A+I+   QH 
Sbjct: 356 MDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHD 415

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
             +  + L+ +M    I PD    ++V+SAC H   + +G ++        G+       
Sbjct: 416 CFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQG-KWVHAYIRKNGLKVNVILG 474

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
              +D+  + G    A +V + +  K  +  W AL+ G  ++G ++
Sbjct: 475 TTLLDMYMKCGCVENALEVFNGMEEKGVSS-WNALIIGLAVNGLVE 519



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 96/220 (43%), Gaps = 14/220 (6%)

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV--EAANCVFNTMPNVDSVSWNAMI 491
           L+   ++ +Q++ +G+ S   A + L+        +  + +  +F+ + N +   WN M+
Sbjct: 54  LKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMM 113

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
            A  Q  +  +A+ LY+ M+K  + PD  T+  V+ AC    L   G+   + +     +
Sbjct: 114 RAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHV---LKV 170

Query: 552 PPGEDHYAR--FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609
               D Y +   I++    G   +A+ + D  P   S   W ++LAG    G+    ++ 
Sbjct: 171 GFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVS-WNSILAGYVKKGD----VEE 225

Query: 610 AEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
           A+ +F  MP      V  ++M   LG+        KL  +
Sbjct: 226 AKLIFDQMPQR--NIVASNSMIVLLGKMGQVMEAWKLFNE 263


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 263/818 (32%), Positives = 431/818 (52%), Gaps = 136/818 (16%)

Query: 41  MISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLA 100
           +I +G  P  H+ + L+++Y K   L  AR + +E+P  D+      +++ ++   ++ A
Sbjct: 15  VIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEA 74

Query: 101 REMF---NKTPLKMRDTVF----------------------------------YNAMITA 123
            ++F     T +++   +F                                   NA +T 
Sbjct: 75  VQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTM 134

Query: 124 YSHNSNGHAAIELFRDMRRDDV-------------------------------KPDNFTF 152
           Y    +     + F+ M  +++                               +P+ +TF
Sbjct: 135 YMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTF 194

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            S+L   A    +  +   +H  V+KSG    + + N+L++VY KC S+ +         
Sbjct: 195 ISILKTCAS-KGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANY--------- 244

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A +VF E+PERD +SWT ++TG+V   Y    R F                        +
Sbjct: 245 ACKVFGEIPERDVVSWTALITGFVAEGYGSGLRIFN-----------------------Q 281

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           ML      + +T+ S++ +C++     LGKQVHA +++                      
Sbjct: 282 MLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVK---------------------- 319

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
                       N +   D V   A++  Y     +++A+++F  + +R+L +WTV+++G
Sbjct: 320 ------------NSLDGNDFVG-TALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAG 366

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
            AQ+G GE+ +K F QM+ EG KP ++  A +++ C+ +  L++GRQLH+  + +G    
Sbjct: 367 YAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGD 426

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           +   +AL+ MYA+CG VE A  VF+ + + D+VSWN +I    QHG G +A++ +E ML 
Sbjct: 427 MFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLD 486

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
           EG +PD +TF+ VLSAC+H GL++EG+++F ++   YGI P  +HYA  +D+L RAGKF 
Sbjct: 487 EGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFH 546

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632
           E +  I+ +    +  IWE +L  C++HGNI+ G +AA +LF+L P     Y+LLSNM+A
Sbjct: 547 EVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFA 606

Query: 633 NLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVL 692
             G WDD   VR LM  RGVKKEPGCSW+EV+ +VHVFL  D +HP+ + ++  L+ L  
Sbjct: 607 AKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQ 666

Query: 693 EMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGD 752
           ++  +GY P+T  VLH++   +K+  L  HSE+LA+AF L+      T+R+ KNLRICGD
Sbjct: 667 KLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGD 726

Query: 753 CHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           CH+  K +S++  +E+VVRD   FHHF++G CSC ++W
Sbjct: 727 CHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 764



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 116/499 (23%), Positives = 201/499 (40%), Gaps = 109/499 (21%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           + S L+ C  +  +     +++H  +I SG  P  H+ N L+++Y K     YA  +F E
Sbjct: 194 FISILKTCASKGDLNE--GKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGE 251

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           IP+ D+V+ T LI  + A                              Y       + + 
Sbjct: 252 IPERDVVSWTALITGFVAE----------------------------GYG------SGLR 277

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           +F  M  +   P+ +TF S+L + + + + +    Q+H  +VK+       V  AL+ +Y
Sbjct: 278 IFNQMLAEGFNPNMYTFISILRSCSSLSDVDLG-KQVHAQIVKNSLDGNDFVGTALVDMY 336

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            K            +  A  +F+ + +RD  +WT ++ GY +           DG  E  
Sbjct: 337 AK---------NRFLEDAETIFNRLIKRDLFAWTVIVAGYAQ-----------DGQGEKA 376

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                      V   ++M    ++ +EFT  S +S C+       G+Q+H+  +    K 
Sbjct: 377 -----------VKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAI----KA 421

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
                + V +ALV +Y KCG V +A  +F+ +  RD VSWN I+  Y             
Sbjct: 422 GQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGY------------- 468

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
                             +Q+G G + LK F  M  EG  P +  F G +++C+ +G +E
Sbjct: 469 ------------------SQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIE 510

Query: 436 NGRQLHAQLVH-SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV-SWNAMIAA 493
            G++    L    G   ++     ++ +  R G           M    +V  W  ++ A
Sbjct: 511 EGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGA 570

Query: 494 LGQHGN---GAR-AIELYE 508
              HGN   G R A++L+E
Sbjct: 571 CKMHGNIEFGERAAMKLFE 589


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 266/735 (36%), Positives = 414/735 (56%), Gaps = 59/735 (8%)

Query: 65  KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
           K ++A+ L   +P P ++  +T+++ YS  + +  +  +FN  P     T+ + ++I  Y
Sbjct: 25  KQLHAQILRTSLPSPSLL--STILSIYSNLNLLHDSLLIFNSLP-SPPTTLAWKSIIRCY 81

Query: 125 SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLF 184
           + +     ++  F  M      PD+  F SVL +  L+ ++ +    +H  +++ G G  
Sbjct: 82  TSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLM-KDLRFGESVHGCIIRLGMGFD 140

Query: 185 TSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAA 244
               NAL+++Y K  S   V++       ++VFDE    D  S         ++ YL + 
Sbjct: 141 LYTCNALMNMYSKFWSLEEVNTY------KKVFDEGKTSDVYSKKEK-----ESYYLGSL 189

Query: 245 REFLDGMSENVGVAWNALISGYVH---RELKMLMLR------IQLDEFTYTSVISACANS 295
           R+  + M +   V+WN +ISG       E  ++M+R      ++ D FT +SV+   A  
Sbjct: 190 RKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEY 249

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
                GK++H Y +R       +  + + ++L+ +Y KC +V+++  +F  +P+ D +  
Sbjct: 250 VNLLKGKEIHGYAIRNGY----DADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGI-- 303

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
                                        SW  +I+G  QNG  +EGLK F QM +   K
Sbjct: 304 -----------------------------SWNSIIAGCVQNGMFDEGLKFFQQMLIAKIK 334

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P   +F+  + +CA L  L  G+QLH  ++ S +D ++   +AL+ MYA+CG +  A  +
Sbjct: 335 PNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWI 394

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           F+ M   D VSW AMI     HG+   AI L+++M  EG+ P+ + F+ VL+AC+HAGLV
Sbjct: 395 FDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLV 454

Query: 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
            E  +YF +M   Y I PG +HYA   DLL R G+  EA + I  +  +P+  +W  LLA
Sbjct: 455 DEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLA 514

Query: 596 GCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKE 655
            CR+H NI+L  + +++LF + P + G YVLLSN+Y+  GRW DA ++R  MRD+G+KK+
Sbjct: 515 ACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKK 574

Query: 656 PGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQK 715
           P CSWIE+ NKVH F+  D +HP    + + L+ L+ +M + GYV DT  VLHD+E +QK
Sbjct: 575 PACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQK 634

Query: 716 EYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKR 775
            Y L +HSE+LA+ FG++  P G T+RV KNLR+C DCH A KF+SK+VGREIVVRD  R
Sbjct: 635 RYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISKIVGREIVVRDNSR 694

Query: 776 FHHFRDGKCSCGDYW 790
           FHHF+DGKCSCGD+W
Sbjct: 695 FHHFKDGKCSCGDFW 709



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 136/538 (25%), Positives = 238/538 (44%), Gaps = 94/538 (17%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYART-- 71
           N + S L+ C     +      SVH  +I  G     +  N L+++Y K   L    T  
Sbjct: 107 NVFPSVLKSCTLMKDL--RFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYK 164

Query: 72  -LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNG 130
            +FDE    D+ ++    + Y  S      R++F   P   RD V +N +I+  + N   
Sbjct: 165 KVFDEGKTSDVYSKKEKESYYLGS-----LRKVFEMMP--KRDIVSWNTVISGNAQNGMH 217

Query: 131 HAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNA 190
             A+ + R+M   D++PD+FT +SVL   A  V   K   ++H   +++G      + ++
Sbjct: 218 EDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKG-KEIHGYAIRNGYDADVFIGSS 276

Query: 191 LISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDG 250
           LI +Y KC           +  + RVF  +P+ D +SW +++ G V+N   D   +F   
Sbjct: 277 LIDMYAKCTR---------VDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQ- 326

Query: 251 MSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
                                +ML+ +I+ +  +++S++ ACA+     LGKQ+H Y++R
Sbjct: 327 ---------------------QMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIR 365

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
           +      + ++ + +ALV +Y KCG +  AR IF++M   D+VSW A++  Y        
Sbjct: 366 SRF----DGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGY-------- 413

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
                                  A +G+  + + LF +M +EG KP   AF   +T+C+ 
Sbjct: 414 -----------------------ALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSH 450

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAG----NALITMYARCGVVEAANCVFNTMPNVDSVS 486
            G ++   +    +     D  +  G     A+  +  R G +E A    + M    + S
Sbjct: 451 AGLVDEAWKYFNSMTQ---DYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGS 507

Query: 487 -WNAMIAALGQHGNGARAIELYEQMLKE--GILPDRITFLTVLSAC-NHAGLVKEGRR 540
            W+ ++AA   H N    IEL E++ K+   + P  I    +LS   + AG  K+ R+
Sbjct: 508 VWSTLLAACRVHKN----IELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARK 561


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 273/789 (34%), Positives = 409/789 (51%), Gaps = 112/789 (14%)

Query: 7   DYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKL 66
           DY++      AS L  C     +       +H+++I +G                     
Sbjct: 308 DYLKPDCVTVASLLSACASNGALCK--GEQLHSYVIKAGI-------------------- 345

Query: 67  VYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSH 126
                        D++    L+  Y    ++K A EMF     +  + V +N M+ A+  
Sbjct: 346 -----------SSDMIVEGALLDLYVNCSDIKTAHEMF--LTAQTENVVLWNVMLVAFGK 392

Query: 127 NSNGHAAIELFRDMRRDDVKPDNFTFTSVL----SALALIVEEEKQCMQMHCTVVKSGTG 182
             N   +  +FR M+   + P+ FT+ S+L    S  AL + E     Q+H  V+K+G  
Sbjct: 393 LDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGE-----QIHTQVIKTGFQ 447

Query: 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK-NDYL 241
               V + LI +Y K            +  A  +   + E D +SWT +++GY + N + 
Sbjct: 448 FNVYVCSVLIDMYAK---------HGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFA 498

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
           +A + F +                       ML   IQ D   ++S ISACA       G
Sbjct: 499 EALKHFKE-----------------------MLNRGIQSDNIGFSSAISACAGIQALNQG 535

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
           +Q+HA   ++      E  L + NALV+LY +CG++ EA   F ++  +D +SWN ++S 
Sbjct: 536 RQIHA---QSYVSGYSE-DLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISG 591

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
           +                               AQ+GY E+ LK+F+QM     +   + F
Sbjct: 592 F-------------------------------AQSGYCEDALKVFAQMNRAKLEASFFTF 620

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
             A+++ A +  ++ G+Q+HA ++  G+DS +   NALIT YA+CG +E A   F  MP 
Sbjct: 621 GSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPE 680

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY 541
            + VSWNAMI    QHG G  A+ L+E+M + G +P+ +TF+ VLSAC+H GLV +G  Y
Sbjct: 681 KNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGY 740

Query: 542 FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
           FE+M   +G+ P   HYA  +DL+ RAG  S A+  I+ +P +P A IW  LL+ C +H 
Sbjct: 741 FESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHK 800

Query: 602 NIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWI 661
           N+++G  AA+ L +L P  + TYVLLSNMYA  G+WD   + R++MR+RGVKKEPG SWI
Sbjct: 801 NVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWI 860

Query: 662 EVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALST 721
           EV N VH F V D  HP A  +Y++L +L  +  ++GY  D   +L+D+E +QK+  +  
Sbjct: 861 EVKNSVHAFYVGDRLHPLADKIYEFLAELNKKAAEIGYFQDRYSLLNDVEQEQKDPTVYI 920

Query: 722 HSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRD 781
           HSEKLA+ FGL+ L     + V+KNLR+C DCH+  KF+SK+  R I+VRD  RFHHF  
Sbjct: 921 HSEKLAITFGLLSLSDTVPIHVMKNLRVCKDCHSWIKFVSKISNRAIIVRDAYRFHHFEG 980

Query: 782 GKCSCGDYW 790
           G CSC DYW
Sbjct: 981 GICSCKDYW 989



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 135/566 (23%), Positives = 244/566 (43%), Gaps = 101/566 (17%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           + +H  ++  GF     + N+L+D+Y     L     +F+++P   + +   +I+ +   
Sbjct: 30  KKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGF--- 86

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
               + ++M N+                           ++LF  M  ++V P   +F S
Sbjct: 87  ----MEKKMSNRV--------------------------LDLFSCMIEENVSPTEISFAS 116

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           VL A +      +   Q+H  ++  G      + N LI +Y K           L+ +AR
Sbjct: 117 VLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAK---------NGLIISAR 167

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
           +VFD +  +D +SW  M++G+ +N Y + A                      +H   +M 
Sbjct: 168 KVFDNLCTKDSVSWVAMISGFSQNGYEEEA----------------------IHLFCEMH 205

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
              I    + ++SV+S C    LF +G+Q+HA +     K        V NALVTLY + 
Sbjct: 206 TAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVF----KYGSSLETYVCNALVTLYSRM 261

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
                A  +F++M  +D VS+N+                               +ISGLA
Sbjct: 262 PNFVSAEKVFSKMQSKDEVSFNS-------------------------------LISGLA 290

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
           Q G+ +  L+LF++M+ +  KP     A  +++CA  GAL  G QLH+ ++ +G  S + 
Sbjct: 291 QQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMI 350

Query: 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
              AL+ +Y  C  ++ A+ +F T    + V WN M+ A G+  N + +  ++ QM  +G
Sbjct: 351 VEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKG 410

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
           ++P++ T+ ++L  C   G +  G +   T     G        +  ID+  + GK   A
Sbjct: 411 LIPNQFTYPSILRTCTSVGALDLGEQ-IHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTA 469

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIH 600
             ++ +L  +     W AL++G   H
Sbjct: 470 HVILRTLT-EDDVVSWTALISGYAQH 494



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 131/524 (25%), Positives = 219/524 (41%), Gaps = 114/524 (21%)

Query: 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS 227
           +C ++H  ++K G G  + + N L+ VY          +   +    +VF++MP R   S
Sbjct: 28  ECKKLHGKILKLGFGNESVLCNKLVDVYF---------ALGDLDGVVKVFEDMPNRSVRS 78

Query: 228 WTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTS 287
           W  +++G+++    +   +    M E                        +   E ++ S
Sbjct: 79  WDKIISGFMEKKMSNRVLDLFSCMIEE----------------------NVSPTEISFAS 116

Query: 288 VISACANSGL-FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
           V+ AC+   +  R  +Q+HA ++      +P     ++N L+ LY K G +  AR +F+ 
Sbjct: 117 VLRACSGHRIGIRYAEQIHARIICHGLLCSP----IISNPLIGLYAKNGLIISARKVFDN 172

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
           +  +D VSW A++S                               G +QNGY EE + LF
Sbjct: 173 LCTKDSVSWVAMIS-------------------------------GFSQNGYEEEAIHLF 201

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
            +M   G  P  Y F+  ++ C  +   + G QLHA +   G        NAL+T+Y+R 
Sbjct: 202 CEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRM 261

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
               +A  VF+ M + D VS+N++I+ L Q G    A+EL+ +M ++ + PD +T  ++L
Sbjct: 262 PNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLL 321

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPG-----------EDHYARFID------------ 563
           SAC   G + +G    E +H  Y I  G            D Y    D            
Sbjct: 322 SACASNGALCKG----EQLH-SYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQ 376

Query: 564 ---------LLCRAGK---FSEAKDVIDSLPFK---PSAPIWEALLAGCRIHGNIDLGIQ 608
                    +L   GK    SE+  +   +  K   P+   + ++L  C   G +DLG Q
Sbjct: 377 TENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQ 436

Query: 609 AAEQLFQLMPHHAGTYV--LLSNMYANLGRWDDAARV-RKLMRD 649
              Q+ +        YV  +L +MYA  G+ D A  + R L  D
Sbjct: 437 IHTQVIK-TGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTED 479



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 140/339 (41%), Gaps = 50/339 (14%)

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
           TY  ++  C NSG     K++H  +L+              N LV +Y+  G ++    +
Sbjct: 12  TYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLC----NKLVDVYFALGDLDGVVKV 67

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
           F  MP R + SW+ I+S ++   + +    LF  M E N+                    
Sbjct: 68  FEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENV-------------------- 107

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAG--LGALENGRQLHAQLVHSGYDSSLSAGNALIT 461
                       P + +FA  + +C+G  +G +    Q+HA+++  G   S    N LI 
Sbjct: 108 -----------SPTEISFASVLRACSGHRIG-IRYAEQIHARIICHGLLCSPIISNPLIG 155

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           +YA+ G++ +A  VF+ +   DSVSW AMI+   Q+G    AI L+ +M   GI P    
Sbjct: 156 LYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYV 215

Query: 522 FLTVLSACNHAGLVKEGRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVI 578
           F +VLS C    L   G    E +H     YG           + L  R   F  A+ V 
Sbjct: 216 FSSVLSGCTKIKLFDVG----EQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVF 271

Query: 579 DSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
             +  K     + +L++G    G  D     A +LF  M
Sbjct: 272 SKMQSKDEVS-FNSLISGLAQQGFSD----GALELFTKM 305



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 93/200 (46%), Gaps = 12/200 (6%)

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
           C   G+L   ++LH +++  G+ +     N L+ +Y   G ++    VF  MPN    SW
Sbjct: 20  CLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSW 79

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
           + +I+   +     R ++L+  M++E + P  I+F +VL AC+   +   G RY E +H 
Sbjct: 80  DKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRI---GIRYAEQIHA 136

Query: 548 P---YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
               +G+          I L  + G    A+ V D+L  K S   W A+++G   +G  +
Sbjct: 137 RIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVS-WVAMISGFSQNGYEE 195

Query: 605 LGIQAAEQLFQLMPHHAGTY 624
             I     LF  M H AG +
Sbjct: 196 EAI----HLFCEM-HTAGIF 210


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 277/758 (36%), Positives = 410/758 (54%), Gaps = 101/758 (13%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +HA +I +G+ P   + N L+++Y K  +L +A  LFD +PQ               
Sbjct: 24  GKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQ--------------- 68

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                             R+ V + AMI+  S NS    AI  F  MR     P  F F+
Sbjct: 69  ------------------RNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFS 110

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           S + A A +   E    QMHC  +K G G    V + L  +Y KC           M  A
Sbjct: 111 SAIRACASLGSIEMG-KQMHCLALKFGIGSELFVGSNLEDMYSKC---------GAMFDA 160

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
            +VF+EMP +DE+SWT M+ GY K                 +G    AL++       KM
Sbjct: 161 CKVFEEMPCKDEVSWTAMIDGYSK-----------------IGEFEEALLAFK-----KM 198

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
           +   + +D+    S + AC      + G+ VH+                   ++V L + 
Sbjct: 199 IDEEVTIDQHVLCSTLGACGALKACKFGRSVHS-------------------SVVKLGF- 238

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE-RNLLSWTVMISG 392
                          E D+   NA+   Y  AG ++ A ++F    E RN++S+T +I G
Sbjct: 239 ---------------ESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDG 283

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
             +    E+GL +F ++R +G +P ++ F+  I +CA   ALE G QLHAQ++   +D  
Sbjct: 284 YVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDED 343

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
               + L+ MY +CG++E A   F+ + +   ++WN++++  GQHG G  AI+ +E+M+ 
Sbjct: 344 PFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVD 403

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
            G+ P+ ITF+++L+ C+HAGLV+EG  YF +M   YG+ PGE+HY+  IDLL RAG+  
Sbjct: 404 RGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLK 463

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632
           EAK+ I+ +PF+P+A  W + L  CRIHG+ ++G  AAE+L +L P ++G  VLLSN+YA
Sbjct: 464 EAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYA 523

Query: 633 NLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVL 692
           N  +W+D   VR  MRD  VKK PG SW++V  K HVF  +D +H    A+Y+ L+ L+ 
Sbjct: 524 NERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHXRKSAIYEKLDXLLD 583

Query: 693 EMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGD 752
           +++  GYVP T  V  DM+   KE  L  HSE++AVAF L+ +P G  + V KNLR+C D
Sbjct: 584 QIKAAGYVPXTDSVPLDMDDXMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVD 643

Query: 753 CHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           CH+A KF+SKV GR+I+VRD  RFHHF DG CSCGDYW
Sbjct: 644 CHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/265 (33%), Positives = 126/265 (47%), Gaps = 38/265 (14%)

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
           MLR   D      VI   A +   R GKQ+HA L+     P    +    N LV +Y KC
Sbjct: 1   MLR---DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLT----NHLVNMYSKC 53

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
           G+++ A  +F+ MP+R+LVSW                               T MISGL+
Sbjct: 54  GELDHALKLFDTMPQRNLVSW-------------------------------TAMISGLS 82

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
           QN    E ++ F  MR+ G  P  +AF+ AI +CA LG++E G+Q+H   +  G  S L 
Sbjct: 83  QNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELF 142

Query: 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
            G+ L  MY++CG +  A  VF  MP  D VSW AMI    + G    A+  +++M+ E 
Sbjct: 143 VGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEE 202

Query: 515 ILPDRITFLTVLSACNHAGLVKEGR 539
           +  D+    + L AC      K GR
Sbjct: 203 VTIDQHVLCSTLGACGALKACKFGR 227



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 2/177 (1%)

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
           A A  I + A    L  G+QLHA L+ +GY       N L+ MY++CG ++ A  +F+TM
Sbjct: 7   ALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTM 66

Query: 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
           P  + VSW AMI+ L Q+   + AI  +  M   G +P +  F + + AC   G ++ G+
Sbjct: 67  PQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGK 126

Query: 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           +    +   +GI       +   D+  + G   +A  V + +P K     W A++ G
Sbjct: 127 Q-MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVS-WTAMIDG 181


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 262/755 (34%), Positives = 404/755 (53%), Gaps = 101/755 (13%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           VH H++  G+     + N L+D YCK+  L  A  LF  + +                  
Sbjct: 161 VHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAE------------------ 202

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
                          +D V +NA++T YS     H AI LF  M+    +P  FTF +VL
Sbjct: 203 ---------------KDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVL 247

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
           +A  + +++ +   Q+H  VVK        V NAL+  Y         S    +  AR++
Sbjct: 248 TA-GIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFY---------SKHDRIVEARKL 297

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLML 276
           F EMPE D +S+  ++T                        AWN  +   +    ++   
Sbjct: 298 FYEMPEVDGISYNVLITC----------------------CAWNGRVEESLELFRELQFT 335

Query: 277 RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
           R    +F + +++S  ANS    +G+Q+H+  + T+A       + V N+LV +Y KC K
Sbjct: 336 RFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAIS----EVLVGNSLVDMYAKCDK 391

Query: 337 VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
             EA  IF  +  +  V                                WT +ISG  Q 
Sbjct: 392 FGEANRIFADLAHQSSVP-------------------------------WTALISGYVQK 420

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
           G  E+GLKLF +M           +A  + +CA L +L  G+QLH++++ SG  S++ +G
Sbjct: 421 GLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSG 480

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
           +AL+ MYA+CG ++ A  +F  MP  +SVSWNA+I+A  Q+G+G  A+  +EQM+  G+ 
Sbjct: 481 SALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQ 540

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
           P+ ++FL++L AC+H GLV+EG +YF +M   Y + P  +HYA  +D+LCR+G+F EA+ 
Sbjct: 541 PNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEK 600

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP-HHAGTYVLLSNMYANLG 635
           ++  +PF+P   +W ++L  CRIH N +L I+AA+QLF +     A  YV +SN+YA  G
Sbjct: 601 LMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAG 660

Query: 636 RWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMR 695
            WD   +V+K +R+RG++K P  SW+E+  K HVF  +DT+HP+ + + + L++L  +M 
Sbjct: 661 EWDSVGKVKKALRERGIRKVPAYSWVEIKQKTHVFSANDTSHPQTKEITRKLDELEKQME 720

Query: 696 KLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHN 755
           + GY PD+   LH+++ + K  +L  HSE++A+AF L+  P G+ + V+KNLR C DCH 
Sbjct: 721 EQGYKPDSTCALHNVDEEVKVESLKYHSERIAIAFALISTPKGSPILVMKNLRACNDCHA 780

Query: 756 AFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           A K +SK+V REI VRD  RFHHF DG CSC DYW
Sbjct: 781 AIKVISKIVNREITVRDSSRFHHFTDGSCSCKDYW 815



 Score =  205 bits (521), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 157/582 (26%), Positives = 264/582 (45%), Gaps = 73/582 (12%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           + V A MI +GF P     N  +  + +   L  AR LFDE+P  ++++  T+I  Y  S
Sbjct: 27  QHVDASMIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKS 86

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
            N+  AR +F+   +  R  V +  +I  Y+ ++    A  LF DM R  + PD+ T  +
Sbjct: 87  GNLSTARSLFD--SMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLAT 144

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           +LS      E   +  Q+H  VVK G      V N+L+  Y K        +RSL G A 
Sbjct: 145 LLSGFTEF-ESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCK--------TRSL-GLAC 194

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
            +F  M E+D +++  ++TGY K  +  DA   F                        KM
Sbjct: 195 HLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLF-----------------------FKM 231

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
             L  +  EFT+ +V++A         G+QVH++++    K    +++ V NAL+  Y K
Sbjct: 232 QDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVV----KCNFVWNVFVANALLDFYSK 287

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
             ++ EAR +F +MPE D +S+N                               V+I+  
Sbjct: 288 HDRIVEARKLFYEMPEVDGISYN-------------------------------VLITCC 316

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL 453
           A NG  EE L+LF +++   F    + FA  ++  A    LE GRQ+H+Q + +   S +
Sbjct: 317 AWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEV 376

Query: 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE 513
             GN+L+ MYA+C     AN +F  + +  SV W A+I+   Q G     ++L+ +M + 
Sbjct: 377 LVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRA 436

Query: 514 GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE 573
            I  D  T+ ++L AC +   +  G++    +    G        +  +D+  + G   E
Sbjct: 437 KIGADSATYASILRACANLASLTLGKQLHSRIIRS-GCLSNVFSGSALVDMYAKCGSIKE 495

Query: 574 AKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
           A  +   +P + S   W AL++    +G+    +++ EQ+  
Sbjct: 496 ALQMFQEMPVRNSVS-WNALISAYAQNGDGGHALRSFEQMIH 536



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 103/453 (22%), Positives = 200/453 (44%), Gaps = 61/453 (13%)

Query: 156 LSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARR 215
           L  L  +   ++    +  +++K+G    T   N  +  +++         R  +GAAR+
Sbjct: 13  LHNLGTLTSPKRHFQHVDASMIKTGFDPNTCRFNFQVQTHLQ---------RGDLGAARK 63

Query: 216 VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV--HRELKM 273
           +FDEMP ++ +S  TM+ GY+K+  L  AR   D M +   V W  LI GY   +R L+ 
Sbjct: 64  LFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEA 123

Query: 274 LMLRIQL-------DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
             L   +       D  T  +++S            QVH ++++     T          
Sbjct: 124 FNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDST---------- 173

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
                                    L+  N++L +Y     +  A  LF+ M E++ +++
Sbjct: 174 -------------------------LMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTF 208

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
             +++G ++ G+  + + LF +M+  GF+P ++ FA  +T+   +  +E G+Q+H+ +V 
Sbjct: 209 NALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVK 268

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
             +  ++   NAL+  Y++   +  A  +F  MP VD +S+N +I     +G    ++EL
Sbjct: 269 CNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLEL 328

Query: 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY---ARFID 563
           + ++        +  F T+LS   ++  ++ GR+    +H    +             +D
Sbjct: 329 FRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQ----IHSQAIVTDAISEVLVGNSLVD 384

Query: 564 LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           +  +  KF EA  +   L  + S P W AL++G
Sbjct: 385 MYAKCDKFGEANRIFADLAHQSSVP-WTALISG 416



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 95/231 (41%), Gaps = 71/231 (30%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           YAS L+ C   N  + +L + +H+ +I SG        + L+D+Y K   +  A  +F E
Sbjct: 445 YASILRAC--ANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQE 502

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P                                 +R++V +NA+I+AY+ N +G  A+ 
Sbjct: 503 MP---------------------------------VRNSVSWNALISAYAQNGDGGHALR 529

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
            F  M    ++P++ +F S+L            C   HC +V+ G   F    N++  VY
Sbjct: 530 SFEQMIHSGLQPNSVSFLSIL------------CACSHCGLVEEGLQYF----NSMTQVY 573

Query: 196 --------------VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMM 232
                         + C S  F  +  LM  AR  F    E DE+ W++++
Sbjct: 574 KLEPRREHYASMVDMLCRSGRFDEAEKLM--ARMPF----EPDEIMWSSIL 618


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 287/805 (35%), Positives = 426/805 (52%), Gaps = 89/805 (11%)

Query: 66  LVYARTLFDEIP----QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMI 121
           +V  R L + I     + D +    LI+ Y   D++  AR +F     + R+ V +NAMI
Sbjct: 23  VVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMI 82

Query: 122 TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGT 181
            AY+ N +   A+ L+  M    +  D+ TF SVL A + +     Q  ++H  V  SG 
Sbjct: 83  AAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLA----QGREIHNRVFYSGL 138

Query: 182 GLFTSVLNALISVYVKCVS-------------------SPFVSSRSLMG---AARRVFDE 219
             F S+ NAL+++Y +  S                   +  + + S  G    A R+F E
Sbjct: 139 DSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKE 198

Query: 220 M------------------------PE--------------RDELSWTTMMTGYVKNDYL 241
           M                        PE               D +  T ++  Y K    
Sbjct: 199 MKCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSS 258

Query: 242 DAAREFLDGMSENVGVAWNALISGYV-----HRELKMLMLRIQLDEF-----TYTSVISA 291
             ARE  D M +   V+WN +I  YV     H  L+ L  ++ ++ F     T+ S++ A
Sbjct: 259 HEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALE-LYQKLDMEGFKRTKATFVSILGA 317

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           C++      G+ VH+++L    +   +  + V  ALV +Y KCG + EAR +FN M  RD
Sbjct: 318 CSSVKALAQGRLVHSHIL----ERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRD 373

Query: 352 LVSWNAILSAYVSAGL---IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQ 408
            V+W+ ++ AY S G      +A+ +F+ +  R+ +SW  MI+   QNG     +K+F +
Sbjct: 374 AVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFRE 433

Query: 409 MR-LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467
           M    G KP    F   + +CA LG L   + LHAQ+  S  +S++   N LI MYARCG
Sbjct: 434 MTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCG 493

Query: 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
            +E A  +F        VSW AM+AA  Q+G  A A++L+++M  EG+ PD +T+ ++L 
Sbjct: 494 SLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILF 553

Query: 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSA 587
            C H G +++G RYF  M   + + P  DH+A  +DLL R+G+  +AK++++S+PF+P  
Sbjct: 554 VCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDP 613

Query: 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647
             W   L  CRIHG ++LG  AAE++++L P     Y+ +SN+YA  G W+  A VRK M
Sbjct: 614 VAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKM 673

Query: 648 RDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVL 707
            +RG+KK PG S+IEVD K+H F      HP    + + L +L   MR  GYVPDTK VL
Sbjct: 674 EERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVL 733

Query: 708 HDMESDQKEYALSTHSEKLAVAFGLMKLPG-GATVRVLKNLRICGDCHNAFKFMSKVVGR 766
           HD+   +KE  L  HSEK+A+AFGL+   G G  +RV+KNLR+C DCH A KF++++ GR
Sbjct: 734 HDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGR 793

Query: 767 EIVVRDGKRFHHF-RDGKCSCGDYW 790
           +I+VRD  RFH F  DGKCSCGDYW
Sbjct: 794 DIIVRDCNRFHRFSSDGKCSCGDYW 818



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 135/526 (25%), Positives = 226/526 (42%), Gaps = 124/526 (23%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R +HA ++++GF     +   LI++Y K      AR +FD++ + D+V+          
Sbjct: 226 GRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVS---------- 275

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                                  +N MI  Y  N + H A+EL++ +  +  K    TF 
Sbjct: 276 -----------------------WNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFV 312

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           S+L A +  V+   Q   +H  +++ G     +V  AL+++Y KC S         +  A
Sbjct: 313 SILGACS-SVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGS---------LEEA 362

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDY-LDA--AREFLDGMSENVGVAWNALISGYVHRE 270
           R+VF+ M  RD ++W+T++  Y  N Y  DA  AR+  D +     ++WNA+I+ YV   
Sbjct: 363 RKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNG 422

Query: 271 LKMLMLRI----------QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
             +  ++I          + D  T+ +V+ ACA+ G     K +HA +  +E     E +
Sbjct: 423 CAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESEL----ESN 478

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           + V N L+ +Y +CG + EA  +F    E+ +VSW A+++A+                  
Sbjct: 479 VVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAF------------------ 520

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
                        +Q G   E L LF +M LEG KP D  +   +  C   G+LE G + 
Sbjct: 521 -------------SQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWR- 566

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
                   Y + ++  +AL                    P  D  +  AM+  LG+ G  
Sbjct: 567 --------YFTDMAELHAL-------------------APTADHFA--AMVDLLGRSGRL 597

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546
             A EL E M  E   PD + ++T L+AC   G ++ G    E ++
Sbjct: 598 FDAKELLESMPFE---PDPVAWMTFLTACRIHGKLELGEAAAERVY 640



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 105/358 (29%), Positives = 172/358 (48%), Gaps = 46/358 (12%)

Query: 334 CGKVNEARDIFNQMP----ERDLVSWNAILSAYVSAGLIDEAKSLFEAM--RERNLLSWT 387
           CG V E R +  ++     ERD +  NA++S Y     + +A+S+FE+M  R+RN++SW 
Sbjct: 20  CGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWN 79

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447
            MI+  AQNG+  E L L+ +M L+G       F   + +C+   +L  GR++H ++ +S
Sbjct: 80  AMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS---SLAQGREIHNRVFYS 136

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
           G DS  S  NAL+TMYAR G V  A  +F ++   D  SWNA+I A  Q G+ + A+ ++
Sbjct: 137 GLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIF 196

Query: 508 EQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY--------FET-------MHGPYGIP 552
           ++M K  + P+  T++ V+S  +   ++ EGR+         F+T       +   YG  
Sbjct: 197 KEM-KCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYG-K 254

Query: 553 PGEDHYAR----------------FIDLLCRAGKFSEAKDV---IDSLPFKPSAPIWEAL 593
            G  H AR                 I      G F EA ++   +D   FK +   + ++
Sbjct: 255 CGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSI 314

Query: 594 LAGCRIHGNIDLGIQAAEQLFQL-MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650
           L  C     +  G      + +  +         L NMYA  G  ++A +V   M++R
Sbjct: 315 LGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNR 372



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 193/419 (46%), Gaps = 54/419 (12%)

Query: 8   YIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLV 67
           + RT A  + S L  C     +     R VH+H++  G      +   L+++Y K   L 
Sbjct: 304 FKRTKAT-FVSILGACSSVKALAQ--GRLVHSHILERGLDSEVAVATALVNMYAKCGSLE 360

Query: 68  YARTLFDEIPQPDIVARTTLIAAYSAS---DNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
            AR +F+ +   D VA +TLI AY+++    + + AR++F++  L  RDT+ +NAMIT Y
Sbjct: 361 EARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDR--LGSRDTISWNAMITTY 418

Query: 125 SHNSNGHAAIELFRDMR-RDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGL 183
             N    AA+++FR+M     +KPD  TF +VL A A +     +   +H  + +S    
Sbjct: 419 VQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASL-GRLSEVKALHAQISESELES 477

Query: 184 FTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK-NDYLD 242
              V N LI++Y +C S         +  A R+F    E+  +SWT M+  + +   Y +
Sbjct: 478 NVVVTNTLINMYARCGS---------LEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAE 528

Query: 243 AAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGK 302
           A    LD   E                   M +  ++ D+ TYTS++  C + G    G 
Sbjct: 529 A----LDLFQE-------------------MDLEGVKPDDVTYTSILFVCTHGGSLEQGW 565

Query: 303 QVHAYLLRTEA-KPTPE-FSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAIL 359
           +    +    A  PT + F+     A+V L  + G++ +A+++   MP E D V+W   L
Sbjct: 566 RYFTDMAELHALAPTADHFA-----AMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFL 620

Query: 360 SAYVSAGLIDEAKSLFEAMRERNLLS---WTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           +A    G ++  ++  E + E +  S   +  M +  A +G  E+   +  +M   G K
Sbjct: 621 TACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLK 679



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 92/183 (50%), Gaps = 9/183 (4%)

Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
           +P +  F   + SC+  G +  GR LH ++  S ++     GNALI+MY +C  +  A  
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 475 VFNTMP--NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
           VF +M     + VSWNAMIAA  Q+G+   A+ LY +M  +G+  D +TF++VL AC+  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 533 GLVKE-GRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
              +E   R F +     G+   +      + +  R G   +AK +  SL  +     W 
Sbjct: 124 AQGREIHNRVFYS-----GLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETS-WN 177

Query: 592 ALL 594
           A++
Sbjct: 178 AVI 180


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 268/744 (36%), Positives = 413/744 (55%), Gaps = 73/744 (9%)

Query: 51  HIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLK 110
           H+  RLI +         AR LFD IPQPD    +TL                       
Sbjct: 99  HLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTL----------------------- 135

Query: 111 MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM 170
                     I+A + +   + AI+++  ++   +KPD   F +   A A +  +  +  
Sbjct: 136 ----------ISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACA-VSGDALRVK 184

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           ++H    + G      V NALI  Y KC           +  ARRVFD++  RD +SWT+
Sbjct: 185 EVHDDATRCGVMSDVFVGNALIHAYGKC---------KCVEGARRVFDDLVVRDVVSWTS 235

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           + + YVK  +    R+ +D   E   + W+                 ++ +  T +S++ 
Sbjct: 236 LSSCYVKCGF---PRKGMDVFRE---MGWSG----------------VKPNPMTVSSILP 273

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           ACA     + GK++H + +R         +L V +ALV+LY KC  V EAR +F+ MP R
Sbjct: 274 ACAELKDLKSGKEIHGFAVRHGM----VVNLFVCSALVSLYAKCLSVREARMVFDLMPHR 329

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL----LSWTVMISGLAQNGYGEEGLKLF 406
           D+VSWN +L+AY      ++  SLF  M    +     +W  +I G  +NG  EE +++F
Sbjct: 330 DVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMF 389

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
            +M+  GFKP +   +  + +C+    L  G+++H  +        L++  AL+ MYA+C
Sbjct: 390 RKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKC 449

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G +  +  VF+ M   D V+WN MI A   HGNG  A+ L+++ML   + P+ +TF  VL
Sbjct: 450 GDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVL 509

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
           S C+H+ LV+EG + F +M   + + P  +HY+  +D+  RAG+ +EA   I  +P +P+
Sbjct: 510 SGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPT 569

Query: 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKL 646
           A  W ALLA CR++ N++L   +A++LF++ P++ G YV L N+      W +A++VR L
Sbjct: 570 ASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRIL 629

Query: 647 MRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFV 706
           M++RG+ K PGCSW++V NKVH F+V D ++ E+  +Y +L++LV +M+  GY PDT +V
Sbjct: 630 MKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYV 689

Query: 707 LHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGR 766
           L D++ ++K  +L  HSEKLAVAFG++ L G +T+RV KNLRICGDCHNA K+MSKVVG 
Sbjct: 690 LQDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGV 749

Query: 767 EIVVRDGKRFHHFRDGKCSCGDYW 790
            IVVRD  RFHHF++G CSC D W
Sbjct: 750 IIVVRDSLRFHHFKNGNCSCKDLW 773



 Score =  107 bits (266), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 106/425 (24%), Positives = 178/425 (41%), Gaps = 66/425 (15%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +H   +  G      + + L+ +Y K L +  AR +FD +P  D+V+   ++ AY  
Sbjct: 284 GKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFK 343

Query: 94  SDNVKLAREMFNKTPLKMR------DTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147
           +   +    +F    LKM       D   +NA+I     N     A+E+FR M++   KP
Sbjct: 344 NKEYEKGFSLF----LKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKP 399

Query: 148 DNFTFTSVLSALALIVEEEKQCMQMHCTVVKS-GTGLFTSVLNALISVYVKCVSSPFVSS 206
           +  T +S+L A +   E  +   ++HC V +    G  TS   AL+ +Y KC        
Sbjct: 400 NEITISSILPACSF-SENLRMGKEIHCYVFRHWKVGDLTST-TALLYMYAKCGD------ 451

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              +  +R VFD M  +D ++W TM+     +     A    D                 
Sbjct: 452 ---LNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFD----------------- 491

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE-AKPTPEFSLPVNN 325
                KML+ R+Q +  T+T V+S C++S L   G Q+   + R    +P         +
Sbjct: 492 -----KMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHY----S 542

Query: 326 ALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA---YVSAGLID-EAKSLFEAMRE 380
            +V +Y + G++NEA      MP E    +W A+L+A   Y +  L    AK LFE +  
Sbjct: 543 CVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFE-IEP 601

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
            N  ++  + + L       E  ++   M+  G           IT   G   L+ G ++
Sbjct: 602 NNPGNYVSLFNILVTAKMWSEASQVRILMKERG-----------ITKTPGCSWLQVGNKV 650

Query: 441 HAQLV 445
           H  +V
Sbjct: 651 HTFVV 655


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 290/777 (37%), Positives = 407/777 (52%), Gaps = 123/777 (15%)

Query: 27  NPITSSLA----RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIV 82
           + ITS+ A    + VH H   +GF     + N LI +Y K   +  AR +FD +      
Sbjct: 242 SAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCD---- 297

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR 142
                                        RD + +NAMI   + N  GH A  +F  M++
Sbjct: 298 -----------------------------RDVISWNAMIGGLAQNGCGHEAFTIFLKMQQ 328

Query: 143 DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSP 202
           +   PD+ T+ S+L+        E    ++H   V+ G      V +A + +Y++C S  
Sbjct: 329 EGFVPDSTTYLSLLNTHVSTGAWE-WVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGS-- 385

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL 262
                  +  A+ +FD++  R+  +                               WNA+
Sbjct: 386 -------IDDAQLIFDKLAVRNVTT-------------------------------WNAM 407

Query: 263 ISGYVH----RELKMLMLRIQLDEF-----TYTSVISACANSGLFRLGKQVHAYLLRTEA 313
           I G       RE   L L+++ + F     T+ +++SA          K+VH+Y     A
Sbjct: 408 IGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSY-----A 462

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
                  L V NALV +Y KCG         N M                       AK 
Sbjct: 463 IDAGLVDLRVGNALVHMYAKCG---------NTM----------------------YAKQ 491

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
           +F+ M ERN+ +WTVMISGLAQ+G G E   LF QM  EG  P    +   +++CA  GA
Sbjct: 492 VFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGA 551

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
           LE  +++H+  V++G  S L  GNAL+ MYA+CG V+ A  VF+ M   D  SW  MI  
Sbjct: 552 LEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGG 611

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
           L QHG G  A++L+ +M  EG  P+  +F+ VLSAC+HAGLV EGRR F ++   YGI P
Sbjct: 612 LAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEP 671

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
             +HY   +DLL RAG+  EAK  I ++P +P    W ALL  C  +GN+++   AA++ 
Sbjct: 672 TMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKER 731

Query: 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVD 673
            +L P  A TYVLLSN+YA  G W+    VR +M+ RG++KEPG SWIEVDN++H F+V 
Sbjct: 732 LKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIHSFVVG 791

Query: 674 DTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLM 733
           DT+HPE++ +Y  L+ L+  ++  GYVPDT+ VL + + + KE AL +HSEKLA+ +GLM
Sbjct: 792 DTSHPESKEIYAKLKDLIKRLKAEGYVPDTRLVLRNTDQEYKEQALCSHSEKLAIVYGLM 851

Query: 734 KLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             P    +RV KNLR+C DCH A KF+SKV GREIV RD KRFHHF+DG CSCGDYW
Sbjct: 852 HTPYRNPIRVYKNLRVCSDCHTATKFISKVTGREIVARDAKRFHHFKDGVCSCGDYW 908



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 169/629 (26%), Positives = 269/629 (42%), Gaps = 120/629 (19%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y S L+ C   +P++    + +HAH+I SGF+    +   L+++Y K   +  A+ +FD+
Sbjct: 33  YLSILKAC--CSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDK 90

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           + +                                 R+ + +  MI   +H   G  A  
Sbjct: 91  MVE---------------------------------RNVISWTVMIGGLAHYGRGQEAFH 117

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
            F  M+R+   P+++T+ S+L+A A     E    ++H   V +G  L   V NAL+ +Y
Sbjct: 118 RFLQMQREGFIPNSYTYVSILNANASAGALE-WVKEVHSHAVNAGLALDLRVGNALVHMY 176

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            K  S         +  AR VFD M ERD  SWT M+ G  ++     A      M E  
Sbjct: 177 AKSGS---------IDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQM-ERG 226

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACA--NSGLFRLGKQVHAYLLRTEA 313
           G   N                       TY S+++A A  ++G     K+VH +      
Sbjct: 227 GCLPNLT---------------------TYLSILNASAITSTGALEWVKEVHKH----AG 261

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
           K      L V NAL+ +Y KCG +++AR +F+ M +RD++SWNA                
Sbjct: 262 KAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNA---------------- 305

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
                          MI GLAQNG G E   +F +M+ EGF P    +   + +    GA
Sbjct: 306 ---------------MIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGA 350

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
            E  +++H   V  G  S L  G+A + MY RCG ++ A  +F+ +   +  +WNAMI  
Sbjct: 351 WEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGG 410

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
           + Q   G  A+ L+ QM +EG  PD  TF+ +LS    A + +E   + + +H  Y I  
Sbjct: 411 VAQQKCGREALSLFLQMRREGFFPDATTFVNILS----ANVGEEALEWVKEVH-SYAIDA 465

Query: 554 GEDHY---ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
           G          + +  + G    AK V D +  + +   W  +++G   HG    G +A 
Sbjct: 466 GLVDLRVGNALVHMYAKCGNTMYAKQVFDDM-VERNVTTWTVMISGLAQHG---CGHEAF 521

Query: 611 EQLFQLMPH----HAGTYVLLSNMYANLG 635
               Q++       A TYV + +  A+ G
Sbjct: 522 SLFLQMLREGIVPDATTYVSILSACASTG 550



 Score =  199 bits (506), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 147/485 (30%), Positives = 229/485 (47%), Gaps = 83/485 (17%)

Query: 120 MITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKS 179
           MI  Y+       A++++  MRR+  +P+  T+ S+L A    V   K   ++H  +++S
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPV-SLKWGKKIHAHIIQS 59

Query: 180 GTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND 239
           G      V  AL+++YVKC S         +  A+ +FD+M ER+ +SWT M+ G     
Sbjct: 60  GFQSDVRVETALVNMYVKCGS---------IDDAQLIFDKMVERNVISWTVMIGGLAH-- 108

Query: 240 YLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFR 299
           Y      F                    HR L+M       + +TY S+++A A++G   
Sbjct: 109 YGRGQEAF--------------------HRFLQMQREGFIPNSYTYVSILNANASAGALE 148

Query: 300 LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAIL 359
             K+VH++ +           L V NALV +Y K G +++AR +F+ M ERD+ SW    
Sbjct: 149 WVKEVHSHAV----NAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSW---- 200

Query: 360 SAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY 419
                                      TVMI GLAQ+G G+E   LF QM   G  P   
Sbjct: 201 ---------------------------TVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLT 233

Query: 420 AF-----AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
            +     A AITS    GALE  +++H     +G+ S L  GNALI MYA+CG ++ A  
Sbjct: 234 TYLSILNASAITST---GALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARL 290

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG- 533
           VF+ M + D +SWNAMI  L Q+G G  A  ++ +M +EG +PD  T+L++L+     G 
Sbjct: 291 VFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGA 350

Query: 534 --LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
              VKE  ++   +    G+       + F+ +  R G   +A+ + D L  + +   W 
Sbjct: 351 WEWVKEVHKHAVEV----GLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVR-NVTTWN 405

Query: 592 ALLAG 596
           A++ G
Sbjct: 406 AMIGG 410



 Score =  172 bits (436), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 142/525 (27%), Positives = 230/525 (43%), Gaps = 85/525 (16%)

Query: 279 QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
           Q +E TY S++ AC +    + GK++HA+++++  +      + V  ALV +Y KCG   
Sbjct: 27  QPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQS----DVRVETALVNMYVKCGS-- 80

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGY 398
                                        ID+A+ +F+ M ERN++SWTVMI GLA  G 
Sbjct: 81  -----------------------------IDDAQLIFDKMVERNVISWTVMIGGLAHYGR 111

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
           G+E    F QM+ EGF P  Y +   + + A  GALE  +++H+  V++G    L  GNA
Sbjct: 112 GQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNA 171

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           L+ MYA+ G ++ A  VF+ M   D  SW  MI  L QHG G  A  L+ QM + G LP+
Sbjct: 172 LVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPN 231

Query: 519 RITFLTVLSACNHAGLVKEGR-RYFETMH---GPYGIPPGEDHYARFIDLLCRAGKFSEA 574
             T+L++L+A   + +   G   + + +H   G  G           I +  + G   +A
Sbjct: 232 LTTYLSILNA---SAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDA 288

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH----HAGTYVLLSNM 630
           + V D +  +     W A++ G   +G    G +A     ++        + TY+ L N 
Sbjct: 289 RLVFDGMCDRDVIS-WNAMIGGLAQNG---CGHEAFTIFLKMQQEGFVPDSTTYLSLLNT 344

Query: 631 YANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLE-- 688
           + + G W+    V K   + G+  +       V   +    +DD     AQ ++  L   
Sbjct: 345 HVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDD-----AQLIFDKLAVR 399

Query: 689 ----------------------QLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSE-- 724
                                  L L+MR+ G+ PD    ++ + ++  E AL    E  
Sbjct: 400 NVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVH 459

Query: 725 KLAVAFGLMKL-PGGATVRVLKNLRICGDCHNAFKFMSKVVGREI 768
             A+  GL+ L  G A V +      CG+   A +    +V R +
Sbjct: 460 SYAIDAGLVDLRVGNALVHMYAK---CGNTMYAKQVFDDMVERNV 501


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 272/763 (35%), Positives = 407/763 (53%), Gaps = 103/763 (13%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           T ++   +H H+I  G++    + N L+D YCK+  L  A  LF                
Sbjct: 155 TKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLF---------------- 198

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
                      + M NK      DTV +N+++T YS+      AIELF ++    +KP +
Sbjct: 199 -----------KHMLNK------DTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSD 241

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           FTF ++LSA A+ +++ K   Q+H  V+K+       V NAL+  Y         S    
Sbjct: 242 FTFAALLSA-AVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYY---------SKHDQ 291

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +    ++F EMPE D +S+  ++T Y                      AWN         
Sbjct: 292 VDEVGKLFXEMPELDGISYNVVITSY----------------------AWNGQFKESFDL 329

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
             K+   R    +F + +++S   +S   R+G+Q+H   +   A     F   V NALV 
Sbjct: 330 FRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGAN----FESRVENALVD 385

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           +Y KC    EA+ I                               F+ +  ++ + WT M
Sbjct: 386 MYAKCNGDKEAQKI-------------------------------FDNIACKSTVPWTAM 414

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA-FAGAITSCAGLGALENGRQLHAQLVHSG 448
           IS   Q G  EEG+ +FS MR  G  P D A FA  + +CA L ++  GRQLH+ L+ SG
Sbjct: 415 ISAYVQKGKHEEGINVFSDMRRTGV-PADQATFASILRACANLASISLGRQLHSLLIRSG 473

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
           + S++ +G+AL+  YA+CG +  A   F  MP  +SVSWNA+I+A  Q+GN    +  ++
Sbjct: 474 FMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQ 533

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568
           QM++ G  PD ++FL+VLSAC+H G V+E   +F +M   Y + P  +HY   +D+LCR 
Sbjct: 534 QMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRN 593

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP-HHAGTYVLL 627
           G+F EA+ ++  +PF+PS  +W ++L  CRIH N +L  +AA++LF +     A  Y+ +
Sbjct: 594 GRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINM 653

Query: 628 SNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYL 687
           SN+YA  G+WD+ A+V+K MRDRGV+K P  SW+E+ ++ HVF  +D +HPE + + + +
Sbjct: 654 SNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKI 713

Query: 688 EQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNL 747
             L  EM K GY PDT   LHD++   K  +L  HSE+ A+AF LM  P G+ + V+KNL
Sbjct: 714 NALSKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNL 773

Query: 748 RICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           R C DCH A K +S++V REI+VRD  RFHHF+DG CSCGDYW
Sbjct: 774 RACTDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 139/579 (24%), Positives = 259/579 (44%), Gaps = 71/579 (12%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           + AH++ +GF P     N  ++ + +   LV+A  +FD++P  + ++   +I+ +     
Sbjct: 30  IDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGK 89

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
           +  ARE+F+   +  R  V +  +I  Y  ++    A  L+ DMRR  ++PD  T  ++L
Sbjct: 90  LSKARELFDG--MVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLL 147

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
           S    + E +   +Q+H  V+K G      V N+L+  Y K            +  A ++
Sbjct: 148 SGFGEL-ETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKT---------HCLYLASQL 197

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLML 276
           F  M  +D +++ ++MTGY      + A E                        L++   
Sbjct: 198 FKHMLNKDTVTFNSLMTGYSNEGLNEEAIELF----------------------LELHNS 235

Query: 277 RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
            I+  +FT+ +++SA       + G+QVH ++L+T       +++ V NAL+  Y K  +
Sbjct: 236 GIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFV----WNVFVGNALLDYYSKHDQ 291

Query: 337 VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
           V+E   +F +MPE D +S+N ++++Y                               A N
Sbjct: 292 VDEVGKLFXEMPELDGISYNVVITSY-------------------------------AWN 320

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
           G  +E   LF +++   F    + FA  ++       L  GRQ+H Q +  G +      
Sbjct: 321 GQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVE 380

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
           NAL+ MYA+C   + A  +F+ +    +V W AMI+A  Q G     I ++  M + G+ 
Sbjct: 381 NALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVP 440

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
            D+ TF ++L AC +   +  GR+   ++    G        +  +D   + G  ++A  
Sbjct: 441 ADQATFASILRACANLASISLGRQ-LHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIK 499

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
               +P + S   W AL++    +GN+D  + + +Q+ Q
Sbjct: 500 SFGEMPERNSVS-WNALISAYAQNGNVDGTLNSFQQMIQ 537



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 88/226 (38%), Gaps = 59/226 (26%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           +AS L+ C   N  + SL R +H+ +I SGF    +  + L+D Y K   +  A   F E
Sbjct: 446 FASILRAC--ANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGE 503

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P+ + V+   LI+AY+ + NV                                    + 
Sbjct: 504 MPERNSVSWNALISAYAQNGNVD---------------------------------GTLN 530

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
            F+ M +   KPD+ +F SVLSA +            HC  V+     F    N++  +Y
Sbjct: 531 SFQQMIQSGYKPDSVSFLSVLSACS------------HCGFVEEALWHF----NSMTQIY 574

Query: 196 VKCVSSPFVSS-------RSLMGAARRVFDEMP-ERDELSWTTMMT 233
                    +S             A ++  EMP E  E+ W++++ 
Sbjct: 575 EVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLN 620



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 105/230 (45%), Gaps = 23/230 (10%)

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
           +L +   + A +V +G++ +    N  +  +   G +  A+ VF+ MP  +++S N MI+
Sbjct: 23  SLNSNHLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMIS 82

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552
              + G  ++A EL++ M++       +++  ++     +   KE  R +  M    GI 
Sbjct: 83  GHLKFGKLSKARELFDGMVERTA----VSWTILIGGYLQSNQSKEAFRLYADMRRG-GIE 137

Query: 553 PGEDHYARFIDLLCRAGKFSEAKDVIDS-------LPFKPSAPIWEALL-AGCRIHGNID 604
           P    Y   + LL   G+  E K+VI         L ++ +  +  +L+ A C+ H    
Sbjct: 138 PD---YVTLVTLLSGFGEL-ETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTH---- 189

Query: 605 LGIQAAEQLFQ-LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653
             +  A QLF+ ++     T+  L   Y+N G  ++A  +   + + G+K
Sbjct: 190 -CLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIK 238


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 295/835 (35%), Positives = 441/835 (52%), Gaps = 77/835 (9%)

Query: 11  TLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHII--NRLIDIYCKSLKLVY 68
           TL +RY S+  L   R PI    A        S G   +   I  N L D    S K  +
Sbjct: 79  TLKSRYTSKF-LPPRRRPIQLFSAARSSPQFSSYGLGNQNEEIDFNFLFD---SSTKTPF 134

Query: 69  ARTLFDEI----PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
           A+ L   +        I   T L+  Y+   +V L+R  F++ P K  D   +N+MI+AY
Sbjct: 135 AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQK--DVYAWNSMISAY 192

Query: 125 SHNSNGHAAIELFRDMRR-DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGL 183
            HN + H AI  F  +    +++PD +TF  VL A   +V+  K    +HC   K G   
Sbjct: 193 VHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRK----IHCWAFKLGFQW 248

Query: 184 FTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKN----- 238
              V  +LI +Y         S     G AR +FD+MP RD  SW  M++G ++N     
Sbjct: 249 NVFVAASLIHMY---------SRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQ 299

Query: 239 --DYLDAAREFLDGMSENVGVAWNAL--------ISGYVHRELKMLMLRIQLDEFTYTSV 288
             D LD  R  L+G+  N     + L        IS  +   L ++   ++ D F   ++
Sbjct: 300 ALDVLDEMR--LEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNAL 357

Query: 289 ISACANSGLFRLGKQVHAYLLRTEA--------------KPTPEFSLPVNNAL------- 327
           I+  A  G     ++    +  T+                P       V   L       
Sbjct: 358 INMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDL 417

Query: 328 VTLYWKCGKVNEARDIFNQMP-----------ERDLVSWNAILSAYVSAGLIDEAKSLFE 376
           +TL      V ++RD  N                D+V  NA++  Y   GL+D A  +FE
Sbjct: 418 LTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFE 477

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR-LEGFKPCDYAFAGAITSCAGLGALE 435
            +  ++++SW  +I+G AQNG   E ++++  M   +   P    +   + + A +GAL+
Sbjct: 478 IIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQ 537

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            G ++H +++ +     +     LI +Y +CG +  A  +F  +P   SV+WNA+I+  G
Sbjct: 538 QGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHG 597

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
            HG+  + ++L+ +ML EG+ PD +TF+++LSAC+H+G V+EG+  F  M   YGI P  
Sbjct: 598 IHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-EYGIKPSL 656

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
            HY   +DLL RAG    A D I  +P +P A IW ALL  CRIHGNI+LG  A+++LF+
Sbjct: 657 KHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFE 716

Query: 616 LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
           +   + G YVLLSN+YAN+G+W+   +VR L R+RG+KK PG S IEV+ KV VF   + 
Sbjct: 717 VDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQ 776

Query: 676 AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKL 735
           +HP+ + +Y+ L  L  +M+ LGY+PD  FVL D+E D+KE+ L++HSE+LA+AFG++  
Sbjct: 777 SHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIIST 836

Query: 736 PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           P  + +R+ KNLR+CGDCHNA KF+S++  REIVVRD  RFHHF+DG CSCGDYW
Sbjct: 837 PPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 263/733 (35%), Positives = 406/733 (55%), Gaps = 65/733 (8%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           ++     L+A YS   ++  AR++F++  + + D V +N++I +Y+       A+E+F  
Sbjct: 161 NVFVGNALVAMYSRCRSLSDARKVFDE--MSVWDVVSWNSIIESYAKLGKPKVALEMFSR 218

Query: 140 MRRD-DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
           M  +   +PDN T  +VL   A +        Q+HC  V S       V N L+ +Y KC
Sbjct: 219 MTNEFGCRPDNITLVNVLPPCASLGTHSLG-KQLHCFAVTSEMIQNMFVGNCLVDMYAKC 277

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK-NDYLDAAREFLDGMSENVG- 256
                     +M  A  VF  M  +D +SW  M+ GY +   + DA R F     E +  
Sbjct: 278 ---------GMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKM 328

Query: 257 --VAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
             V W+A ISGY  R L         +ML   I+ +E T  SV+S CA+ G    GK++H
Sbjct: 329 DVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIH 388

Query: 306 AYLLRTEAKPTPEFSLPVN---NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY 362
            Y ++             N   N L+ +Y KC KV                         
Sbjct: 389 CYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKV------------------------- 423

Query: 363 VSAGLIDEAKSLFEAM--RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF--KPCD 418
                 D A+++F+++  +ER++++WTVMI G +Q+G   + L+L S+M  E    +P  
Sbjct: 424 ------DTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNA 477

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDS-SLSAGNALITMYARCGVVEAANCVFN 477
           +  + A+ +CA L AL  G+Q+HA  + +  ++  L   N LI MYA+CG +  A  VF+
Sbjct: 478 FTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFD 537

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKE 537
            M   + V+W +++   G HG G  A+ ++++M + G   D +T L VL AC+H+G++ +
Sbjct: 538 NMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQ 597

Query: 538 GRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
           G  YF  M   +G+ PG +HYA  +DLL RAG+ + A  +I+ +P +P   +W A L+ C
Sbjct: 598 GMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCC 657

Query: 598 RIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPG 657
           RIHG ++LG  AAE++ +L  +H G+Y LLSN+YAN GRW D  R+R LMR +GVKK PG
Sbjct: 658 RIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPG 717

Query: 658 CSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEY 717
           CSW+E       F V D  HP A+ +Y+ L   +  ++ +GYVP+T F LHD++ ++K+ 
Sbjct: 718 CSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDD 777

Query: 718 ALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFH 777
            L  HSEKLA+A+G++  P GA +R+ KNLR+CGDCH AF +MS+++  +I++RD  RFH
Sbjct: 778 LLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFH 837

Query: 778 HFRDGKCSCGDYW 790
           HF++G CSC  YW
Sbjct: 838 HFKNGSCSCKGYW 850



 Score =  215 bits (547), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 159/566 (28%), Positives = 264/566 (46%), Gaps = 70/566 (12%)

Query: 61  CKSL---KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFY 117
           CK++   KL++ + L   I   ++ +   LI+ Y +   +  A  +  + P        +
Sbjct: 38  CKTISQVKLIHQKLLSFGILTLNLTSH--LISTYISVGCLSHAVSLLRRFPPSDAGVYHW 95

Query: 118 NAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVV 177
           N++I +Y  N   +  + LF  M      PDN+TF  V  A   I     +C +     +
Sbjct: 96  NSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEI--SSVRCGE-SAHAL 152

Query: 178 KSGTGLFTSVL--NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
              TG  ++V   NAL+++Y +C S         +  AR+VFDEM   D +SW +++  Y
Sbjct: 153 SLVTGFISNVFVGNALVAMYSRCRS---------LSDARKVFDEMSVWDVVSWNSIIESY 203

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
            K      A E    M+   G                      + D  T  +V+  CA+ 
Sbjct: 204 AKLGKPKVALEMFSRMTNEFGC---------------------RPDNITLVNVLPPCASL 242

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
           G   LGKQ+H + + +E       ++ V N LV +Y KCG ++EA  +F+ M  +D+VSW
Sbjct: 243 GTHSLGKQLHCFAVTSEMIQ----NMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSW 298

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRER----NLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
           NA+++ Y   G  ++A  LFE M+E     ++++W+  ISG AQ G G E L +  QM  
Sbjct: 299 NAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLS 358

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHA-------QLVHSGYDSSLSAGNALITMYA 464
            G KP +      ++ CA +GAL +G+++H         L  +G+       N LI MYA
Sbjct: 359 SGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYA 418

Query: 465 RCGVVEAANCVFNTMP--NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL--PDRI 520
           +C  V+ A  +F+++     D V+W  MI    QHG+  +A+EL  +M +E     P+  
Sbjct: 419 KCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAF 478

Query: 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF-----IDLLCRAGKFSEAK 575
           T    L AC     ++ G++    +H  Y +   ++    F     ID+  + G  S+A+
Sbjct: 479 TISCALVACASLAALRIGKQ----IHA-YALRNQQNAVPLFVSNCLIDMYAKCGSISDAR 533

Query: 576 DVIDSLPFKPSAPIWEALLAGCRIHG 601
            V D++  K     W +L+ G  +HG
Sbjct: 534 LVFDNMMAKNEV-TWTSLMTGYGMHG 558



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/397 (27%), Positives = 192/397 (48%), Gaps = 50/397 (12%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           T SL + +H   ++S       + N L+D+Y K   +  A T+F  +   D+V+   ++A
Sbjct: 244 THSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVA 303

Query: 90  AYSASDNVKLAREMFNKT---PLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
            YS     + A  +F K     +KM D V ++A I+ Y+    G+ A+ + R M    +K
Sbjct: 304 GYSQIGRFEDAVRLFEKMQEEKIKM-DVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIK 362

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVV-------KSGTGLFTSVLNALISVYVKCV 199
           P+  T  SVLS  A  V       ++HC  +       K+G G    V+N LI +Y KC 
Sbjct: 363 PNEVTLISVLSGCA-SVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCK 421

Query: 200 SSPFVSSRSLMGAARRVFDEMP--ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
                     +  AR +FD +   ERD ++WT M+ GY ++   + A E L  M E    
Sbjct: 422 K---------VDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEED-- 470

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                              + + + FT +  + ACA+    R+GKQ+HAY LR +    P
Sbjct: 471 ------------------CQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVP 512

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
            F   V+N L+ +Y KCG +++AR +F+ M  ++ V+W ++++ Y   G  +EA  +F+ 
Sbjct: 513 LF---VSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDE 569

Query: 378 MRERNL----LSWTVMISGLAQNGYGEEGLKLFSQMR 410
           MR        ++  V++   + +G  ++G++ F++M+
Sbjct: 570 MRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMK 606



 Score =  108 bits (271), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 143/332 (43%), Gaps = 48/332 (14%)

Query: 333 KCGKVNEARDIFNQMPERDLVSWNA---ILSAYVSAGLIDEAKSLFEAM--RERNLLSWT 387
           KC  +++ + I  ++    +++ N    ++S Y+S G +  A SL       +  +  W 
Sbjct: 37  KCKTISQVKLIHQKLLSFGILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWN 96

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447
            +I     NG   + L LF  M    + P +Y F     +C  + ++  G   HA  + +
Sbjct: 97  SLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVT 156

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
           G+ S++  GNAL+ MY+RC  +  A  VF+ M   D VSWN++I +  + G    A+E++
Sbjct: 157 GFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMF 216

Query: 508 EQMLKE-GILPDRITFLTVLSACNHAGLVKEGRR---YFETMHGPYGIPPGEDHYARFID 563
            +M  E G  PD IT + VL  C   G    G++   +  T      +  G       +D
Sbjct: 217 SRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGN----CLVD 272

Query: 564 LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623
           +  + G   EA  V  ++  K     W A++AG                           
Sbjct: 273 MYAKCGMMDEANTVFSNMSVKDVVS-WNAMVAG--------------------------- 304

Query: 624 YVLLSNMYANLGRWDDAARVRKLMRDRGVKKE 655
                  Y+ +GR++DA R+ + M++  +K +
Sbjct: 305 -------YSQIGRFEDAVRLFEKMQEEKIKMD 329



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 110/408 (26%), Positives = 176/408 (43%), Gaps = 69/408 (16%)

Query: 34  ARSVHAHMISSGFKPREHIINRLI-------------DIYCKSLKLVYARTLFDEIPQPD 80
           A  V   M+SSG KP E  +  ++             +I+C ++K  Y   L       +
Sbjct: 349 ALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIK--YPIDLRKNGHGDE 406

Query: 81  IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
            +    LI  Y+    V  AR MF+    K RD V +  MI  YS + + + A+EL  +M
Sbjct: 407 NMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEM 466

Query: 141 RRDD--VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVK---SGTGLFTSVLNALISVY 195
             +D   +P+ FT +  L A A +    +   Q+H   ++   +   LF S  N LI +Y
Sbjct: 467 FEEDCQTRPNAFTISCALVACASLA-ALRIGKQIHAYALRNQQNAVPLFVS--NCLIDMY 523

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            KC S         +  AR VFD M  ++E++WT++MTGY  + Y + A    D      
Sbjct: 524 AKCGS---------ISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFD------ 568

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-- 313
                           +M  +  +LD  T   V+ AC++SG+   G +   Y  R +   
Sbjct: 569 ----------------EMRRIGFKLDGVTLLVVLYACSHSGMIDQGME---YFNRMKTVF 609

Query: 314 --KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDE 370
              P PE        LV L  + G++N A  +  +MP E   V W A LS     G ++ 
Sbjct: 610 GVSPGPEHY----ACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVEL 665

Query: 371 AKSLFEAMRE---RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
            +   E + E    +  S+T++ +  A  G  ++  ++ S MR +G K
Sbjct: 666 GEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVK 713


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 270/724 (37%), Positives = 392/724 (54%), Gaps = 95/724 (13%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D++   +L+  Y    +++ A E F  T  +  + V +N M+ AY    N   +  +F  
Sbjct: 348 DLIIEGSLLDLYVKCFDIETAHEYFLTT--ETENVVLWNVMLVAYGQLGNLSESYWIFLQ 405

Query: 140 MRRDDVKPDNFTFTSVL----SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           M+ + + P+ +T+ S+L    S  AL + E     Q+H  V+KSG      V + LI +Y
Sbjct: 406 MQIEGLMPNQYTYPSILRTCTSLGALDLGE-----QIHTQVIKSGFQFNVYVCSVLIDMY 460

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            K                                        +  LD AR  L  + E  
Sbjct: 461 AK----------------------------------------HGELDTARGILQRLREED 480

Query: 256 GVAWNALISGYVHRELKMLMLR---------IQLDEFTYTSVISACANSGLFRLGKQVHA 306
            V+W A+I+GY   +L    L+         I+ D   ++S ISACA       G+Q+HA
Sbjct: 481 VVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHA 540

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366
              ++      E  L + NALV+LY +CG+  +                     AY++  
Sbjct: 541 ---QSYISGYSE-DLSIGNALVSLYARCGRAQD---------------------AYLA-- 573

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
                   FE +  ++ +SW  +ISG AQ+G+ EE L++FSQM   G +   + F  A++
Sbjct: 574 --------FEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVS 625

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
           + A    ++ G+Q+HA ++ +GYDS   A N LIT+Y++CG +E A   F  MP  + VS
Sbjct: 626 ATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVS 685

Query: 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546
           WNAMI    QHG G+ A+ L+E+M + G++P+ +TF+ VLSAC+H GLV EG  YF +M 
Sbjct: 686 WNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMS 745

Query: 547 GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLG 606
             +G+ P  +HY   +DLL RA     A++ I+ +P +P A IW  LL+ C +H NI++G
Sbjct: 746 KEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIG 805

Query: 607 IQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNK 666
             AA  L +L P  + TYVLLSNMYA  G+WD   R R++M+DRGVKKEPG SWIEV N 
Sbjct: 806 EFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNS 865

Query: 667 VHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKL 726
           +H F V D  HP A+ +Y+Y++ L     ++GYV D   +L+D+E +QK+     HSEKL
Sbjct: 866 IHAFFVGDRLHPLAEQIYEYIDDLNERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKL 925

Query: 727 AVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSC 786
           AVAFGL+ L     +RV+KNLR+C DCHN  KF+SK+  R IVVRD  RFHHF  G CSC
Sbjct: 926 AVAFGLLSLTNTMPIRVIKNLRVCNDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSC 985

Query: 787 GDYW 790
            DYW
Sbjct: 986 KDYW 989



 Score =  218 bits (554), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 157/577 (27%), Positives = 273/577 (47%), Gaps = 83/577 (14%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           L+  YS   N+  A ++F+K  +  RD + YN++I+  +       A++LF  M+ D +K
Sbjct: 254 LVTLYSRWGNLIAAEQIFSK--MHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMK 311

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           PD  T  S+LSA A +    K   Q+H  V+K G      +  +L+ +YVKC        
Sbjct: 312 PDCVTVASLLSACASVGAGYKG-KQLHSYVIKMGMSSDLIIEGSLLDLYVKCFD------ 364

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              +  A   F      + + W  M+  Y +          L  +SE+  +         
Sbjct: 365 ---IETAHEYFLTTETENVVLWNVMLVAYGQ----------LGNLSESYWIF-------- 403

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
               L+M +  +  +++TY S++  C + G   LG+Q+H  ++    K   +F++ V + 
Sbjct: 404 ----LQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVI----KSGFQFNVYVCSV 455

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           L+ +Y K G+++ AR I  ++ E D+VSW A+++ Y    L  EA               
Sbjct: 456 LIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEA--------------- 500

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
                           LKLF +M  +G +  +  F+ AI++CAG+ AL  G+Q+HAQ   
Sbjct: 501 ----------------LKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYI 544

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
           SGY   LS GNAL+++YARCG  + A   F  +   D++SWNA+I+   Q G+   A+++
Sbjct: 545 SGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQV 604

Query: 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR----FI 562
           + QM + G+  +  TF + +SA  +   +K+G++    M     I  G D         I
Sbjct: 605 FSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMM-----IKTGYDSETEASNVLI 659

Query: 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ--LMPHH 620
            L  + G   +AK     +P K     W A++ G   HG     +   E++ Q  LMP+H
Sbjct: 660 TLYSKCGSIEDAKREFFEMPEKNVVS-WNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNH 718

Query: 621 AGTYVLLSNMYANLGRWDDA-ARVRKLMRDRGVKKEP 656
             T+V + +  +++G  ++  +  R + ++ G+  +P
Sbjct: 719 V-TFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKP 754



 Score =  198 bits (504), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 161/604 (26%), Positives = 268/604 (44%), Gaps = 111/604 (18%)

Query: 16  YASQLQLCDP-RNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFD 74
           +AS L+ C   + P    +   +HA +I  GF     + N LID+Y K+           
Sbjct: 114 FASVLRACSGGKAPF--QVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKN----------- 160

Query: 75  EIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAI 134
                                +V LA+ +F +  L ++D+V + AMI+  S N     AI
Sbjct: 161 --------------------GHVDLAKLVFER--LFLKDSVSWVAMISGLSQNGREDEAI 198

Query: 135 ELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
            LF  M +  V P  + F+SVLSA   I E  K   Q+H  +VK G    T V NAL+++
Sbjct: 199 LLFCQMHKSAVIPTPYVFSSVLSACTKI-ELFKLGEQLHGFIVKWGLSSETFVCNALVTL 257

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           Y         S    + AA ++F +M  RD +S+ ++++G  +  + D A +  +     
Sbjct: 258 Y---------SRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFE----- 303

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
                            KM +  ++ D  T  S++SACA+ G    GKQ+H+Y+++    
Sbjct: 304 -----------------KMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMS 346

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
                 L +  +L+ LY KC  +  A + F      ++V WN +L AY   G + E+   
Sbjct: 347 S----DLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESY-- 400

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
                      W                  +F QM++EG  P  Y +   + +C  LGAL
Sbjct: 401 -----------W------------------IFLQMQIEGLMPNQYTYPSILRTCTSLGAL 431

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
           + G Q+H Q++ SG+  ++   + LI MYA+ G ++ A  +   +   D VSW AMIA  
Sbjct: 432 DLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGY 491

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
            QH   A A++L+++M  +GI  D I F + +SAC     + +G++    +H    I   
Sbjct: 492 TQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQ----IHAQSYISGY 547

Query: 555 EDHYA---RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611
            +  +     + L  R G+  +A    + +  K +   W AL++G    G+ +  +Q   
Sbjct: 548 SEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNIS-WNALISGFAQSGHCEEALQVFS 606

Query: 612 QLFQ 615
           Q+ Q
Sbjct: 607 QMNQ 610



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 155/588 (26%), Positives = 258/588 (43%), Gaps = 105/588 (17%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           A+ +HA +  SGF   + + +RLIDIY    ++  A  LFD+IP                
Sbjct: 29  AKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIP---------------- 72

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
           S NV                  F+N +I+           + LF  M  ++V PD  TF 
Sbjct: 73  SSNVS-----------------FWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFA 115

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           SVL A +      +   Q+H  ++  G G    V N LI +Y         S    +  A
Sbjct: 116 SVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLY---------SKNGHVDLA 166

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           + VF+ +  +D +SW  M++G  +N   D A      M ++  +                
Sbjct: 167 KLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIP--------------- 211

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
                    + ++SV+SAC    LF+LG+Q+H ++++     +  F   V NALVTLY +
Sbjct: 212 -------TPYVFSSVLSACTKIELFKLGEQLHGFIVKW-GLSSETF---VCNALVTLYSR 260

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
                                W  +++A          + +F  M  R+ +S+  +ISGL
Sbjct: 261 ---------------------WGNLIAA----------EQIFSKMHRRDRISYNSLISGL 289

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL 453
           AQ G+ +  L+LF +M+L+  KP     A  +++CA +GA   G+QLH+ ++  G  S L
Sbjct: 290 AQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDL 349

Query: 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE 513
               +L+ +Y +C  +E A+  F T    + V WN M+ A GQ GN + +  ++ QM  E
Sbjct: 350 IIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIE 409

Query: 514 GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE 573
           G++P++ T+ ++L  C   G +  G +   T     G        +  ID+  + G+   
Sbjct: 410 GLMPNQYTYPSILRTCTSLGALDLGEQ-IHTQVIKSGFQFNVYVCSVLIDMYAKHGELDT 468

Query: 574 AKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621
           A+ ++  L  +     W A++AG   H   DL  +A  +LFQ M +  
Sbjct: 469 ARGILQRLR-EEDVVSWTAMIAGYTQH---DLFAEAL-KLFQEMENQG 511



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 114/406 (28%), Positives = 191/406 (47%), Gaps = 76/406 (18%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y S L+ C     +   L   +H  +I SGF+   ++ + LID+Y K  +L  AR +   
Sbjct: 418 YPSILRTCTSLGAL--DLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQR 475

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           + + D+V+ T +IA Y+  D       +F +                          A++
Sbjct: 476 LREEDVVSWTAMIAGYTQHD-------LFAE--------------------------ALK 502

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LF++M    ++ DN  F+S +SA A I +   Q  Q+H     SG     S+ NAL+S+Y
Sbjct: 503 LFQEMENQGIRSDNIGFSSAISACAGI-QALNQGQQIHAQSYISGYSEDLSIGNALVSLY 561

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            +C  +           A   F+++  +D +SW  +++G+ ++ + + A +    M++  
Sbjct: 562 ARCGRAQ---------DAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQ-A 611

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           GV  N                      FT+ S +SA AN+   + GKQ+HA +++T    
Sbjct: 612 GVEANL---------------------FTFGSAVSATANTANIKQGKQIHAMMIKTGYDS 650

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
             E S    N L+TLY KCG + +A+  F +MPE+++VSWNA+++ Y   G   EA SLF
Sbjct: 651 ETEAS----NVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLF 706

Query: 376 EAMRERNLL----SWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKP 416
           E M++  L+    ++  ++S  +  G   EGL  F  M  E G  P
Sbjct: 707 EEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVP 752



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 126/496 (25%), Positives = 223/496 (44%), Gaps = 84/496 (16%)

Query: 205 SSRSLMGAAR---RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNA 261
           +S SL+ A +   R+F    + +++  + ++  Y+ +  +D A +  D +  +    WN 
Sbjct: 22  NSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNK 81

Query: 262 LISGYVHRELK---------MLMLRIQLDEFTYTSVISACANS-GLFRLGKQVHAYLLRT 311
           +ISG + ++L          M+   +  DE T+ SV+ AC+     F++ +Q+HA ++  
Sbjct: 82  VISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHH 141

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
               +P     V N L+ LY K G V+ A+ +F ++  +D VSW A++            
Sbjct: 142 GFGSSP----LVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMI------------ 185

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
                              SGL+QNG  +E + LF QM      P  Y F+  +++C  +
Sbjct: 186 -------------------SGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKI 226

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
              + G QLH  +V  G  S     NAL+T+Y+R G + AA  +F+ M   D +S+N++I
Sbjct: 227 ELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLI 286

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY---------- 541
           + L Q G   RA++L+E+M  + + PD +T  ++LSAC   G   +G++           
Sbjct: 287 SGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMS 346

Query: 542 ------------------FETMHGPYGIPPGEDHYARFIDLLC--RAGKFSEAKDVIDSL 581
                              ET H  +     E+     + L+   + G  SE+  +   +
Sbjct: 347 SDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQM 406

Query: 582 PFK---PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYV--LLSNMYANLGR 636
             +   P+   + ++L  C   G +DLG Q   Q+ +        YV  +L +MYA  G 
Sbjct: 407 QIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIK-SGFQFNVYVCSVLIDMYAKHGE 465

Query: 637 WDDAARVRKLMRDRGV 652
            D A  + + +R+  V
Sbjct: 466 LDTARGILQRLREEDV 481



 Score =  115 bits (289), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 146/334 (43%), Gaps = 44/334 (13%)

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
           TY  +   C NSG     K++HA + ++           + + L+ +Y   G+V+ A  +
Sbjct: 12  TYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGED----VLGSRLIDIYLAHGEVDNAIKL 67

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
           F+ +P  ++  WN +                               ISGL       + L
Sbjct: 68  FDDIPSSNVSFWNKV-------------------------------ISGLLAKKLASQVL 96

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGA-LENGRQLHAQLVHSGYDSSLSAGNALITM 462
            LFS M  E   P +  FA  + +C+G  A  +   Q+HA+++H G+ SS    N LI +
Sbjct: 97  GLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDL 156

Query: 463 YARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF 522
           Y++ G V+ A  VF  +   DSVSW AMI+ L Q+G    AI L+ QM K  ++P    F
Sbjct: 157 YSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVF 216

Query: 523 LTVLSACNHAGLVKEGRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579
            +VLSAC    L K G    E +HG    +G+          + L  R G    A+ +  
Sbjct: 217 SSVLSACTKIELFKLG----EQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFS 272

Query: 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
            +  +     + +L++G    G  D  +Q  E++
Sbjct: 273 KMHRRDRIS-YNSLISGLAQRGFSDRALQLFEKM 305


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 266/716 (37%), Positives = 393/716 (54%), Gaps = 74/716 (10%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           +  I+   +LI  Y+  + V +A  +F++ P   R+ V ++A++T Y  N      I L 
Sbjct: 63  ENSIIEVNSLINFYAKVNQVSIAHNLFDRMP--ERNVVSWSALMTGYLLNGFSLKVIRLL 120

Query: 138 RDMRRD-DVKPDNFTFTSVLSALA--LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
           +DM  + +V P+ +     +S+      VEE +QC   H  ++K+G      V NAL+S+
Sbjct: 121 KDMISEGNVSPNEYILAIAISSCCDRGRVEEGRQC---HGLLLKTGFSFHNYVRNALVSM 177

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           Y KC         S++  A  V++E+P  D +++ ++++  V+N YL    E L  M   
Sbjct: 178 YSKC---------SIVQDAMGVWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSE 228

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
             V W                     D+ T+ +  S CA+    RLG  VH  +L ++  
Sbjct: 229 -SVKW---------------------DKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDV- 265

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
              E    V++A++ +Y KCGK   AR +F                              
Sbjct: 266 ---ECDAYVSSAIINMYGKCGKSLMARGVF------------------------------ 292

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
            + ++ RN++ WT +++   QNG  EE L LFS+M  E  K  ++ +A  + +CAGL A 
Sbjct: 293 -DGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGLSAR 351

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
            NG  LH     SG+   +  GNALI MYA+ G +EAA  VF+ M + D ++WNAMI   
Sbjct: 352 RNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMMHRDIITWNAMICGF 411

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
             HG G +A+ +++ ML     P+ +TF  VLSAC H GLV+EG  Y   +   +G+ PG
Sbjct: 412 SHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPG 471

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
            +HY   + LL + G+ +EA++ + + P K     W  LL  C +H N  LG   AE + 
Sbjct: 472 LEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAWRTLLNACHVHQNYGLGRWVAEFVL 531

Query: 615 QLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDD 674
           ++ P+  GTY LLSN+YA   RWD   +VRKLMRD+ +KKEPG SWIE+ N  H+F  +D
Sbjct: 532 EMDPNDVGTYTLLSNIYAKEKRWDGVVKVRKLMRDKKIKKEPGVSWIEIGNVTHIFTSED 591

Query: 675 TAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMK 734
             HP+    Y+ +++L+  ++ LGY PD   VLHD+E +QKEY LS HSEKLA+A+GL+K
Sbjct: 592 NKHPDYGQTYQKVKELLAMIKPLGYTPDIGAVLHDVEDEQKEYYLSYHSEKLAIAYGLLK 651

Query: 735 LPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           LP  A++ V+KNLRIC DCH+A + +SKV  R IVVRD  RFHHFRDG+CSC DYW
Sbjct: 652 LPSEASILVIKNLRICDDCHSAVRLISKVTNRVIVVRDANRFHHFRDGRCSCLDYW 707



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 192/439 (43%), Gaps = 77/439 (17%)

Query: 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS 227
           + +  H  V    T      +N+LI+ Y K          + +  A  +FD MPER+ +S
Sbjct: 49  KTIHSHLIVTSRATENSIIEVNSLINFYAKV---------NQVSIAHNLFDRMPERNVVS 99

Query: 228 WTTMMTGYVKNDY-LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYT 286
           W+ +MTGY+ N + L   R   D +SE                        +  +E+   
Sbjct: 100 WSALMTGYLLNGFSLKVIRLLKDMISEG----------------------NVSPNEYILA 137

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
             IS+C + G    G+Q H  LL+T       F   V NALV++Y KC  V +A  ++N+
Sbjct: 138 IAISSCCDRGRVEEGRQCHGLLLKTGF----SFHNYVRNALVSMYSKCSIVQDAMGVWNE 193

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
           +P  D+V++N+ILS+                               L +NGY  EGL++ 
Sbjct: 194 VPVNDIVAYNSILSS-------------------------------LVENGYLREGLEVL 222

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
             M  E  K     F  A + CA L  L  G  +H +++ S  +      +A+I MY +C
Sbjct: 223 RSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAIINMYGKC 282

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G    A  VF+ + + + V W A++A+  Q+G    A+ L+ +M +E +  +  T+  +L
Sbjct: 283 GKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLL 342

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR----FIDLLCRAGKFSEAKDVIDSLP 582
           +AC  AGL    RR    +HG +    G  H+       I++  ++G    AK V   + 
Sbjct: 343 NAC--AGL--SARRNGSLLHG-HSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMM 397

Query: 583 FKPSAPIWEALLAGCRIHG 601
            +     W A++ G   HG
Sbjct: 398 HR-DIITWNAMICGFSHHG 415



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 156/297 (52%), Gaps = 10/297 (3%)

Query: 343 IFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG 402
           + ++  E  ++  N++++ Y     +  A +LF+ M ERN++SW+ +++G   NG+  + 
Sbjct: 57  VTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRMPERNVVSWSALMTGYLLNGFSLKV 116

Query: 403 LKLFSQMRLEG-FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALIT 461
           ++L   M  EG   P +Y  A AI+SC   G +E GRQ H  L+ +G+       NAL++
Sbjct: 117 IRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVS 176

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           MY++C +V+ A  V+N +P  D V++N+++++L ++G     +E+   M+ E +  D++T
Sbjct: 177 MYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVT 236

Query: 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE-DHY--ARFIDLLCRAGKFSEAKDVI 578
           F+   S C     ++ G      +HG       E D Y  +  I++  + GK   A+ V 
Sbjct: 237 FVNAFSLCASLKDLRLGLH----VHGKMLTSDVECDAYVSSAIINMYGKCGKSLMARGVF 292

Query: 579 DSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL-MPHHAGTYVLLSNMYANL 634
           D L  + +  +W A++A C  +G  +  +    ++ Q  +  +  TY +L N  A L
Sbjct: 293 DGLQSR-NVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGL 348



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 112/496 (22%), Positives = 200/496 (40%), Gaps = 104/496 (20%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R  H  ++ +GF    ++ N L+ +Y K   +  A  +++E+P  DIVA          
Sbjct: 152 GRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVA---------- 201

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                                  YN+++++   N      +E+ R M  + VK D  TF 
Sbjct: 202 -----------------------YNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFV 238

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           +  S  A + ++ +  + +H  ++ S       V +A+I++Y KC        +SLM  A
Sbjct: 239 NAFSLCASL-KDLRLGLHVHGKMLTSDVECDAYVSSAIINMYGKC-------GKSLM--A 288

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           R VFD +  R+ + WT +M    +N   + A      M +                    
Sbjct: 289 RGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQE------------------- 329

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
               ++ +EFTY  +++ACA     R G  +H +      K   +  + V NAL+ +Y K
Sbjct: 330 ---NVKSNEFTYAVLLNACAGLSARRNGSLLHGH----SEKSGFKHHVMVGNALINMYAK 382

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
            G +  A+ +F+ M  RD+++WNA                               MI G 
Sbjct: 383 SGDIEAAKKVFSDMMHRDIITWNA-------------------------------MICGF 411

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG-RQLHAQLVHSGYDSS 452
           + +G G++ L +F  M      P    F G +++C  LG ++ G   LH  +   G    
Sbjct: 412 SHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPG 471

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQML 511
           L     ++++ ++ G +  A     T P   D V+W  ++ A   H N      + E +L
Sbjct: 472 LEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAWRTLLNACHVHQNYGLGRWVAEFVL 531

Query: 512 KEGILPDRITFLTVLS 527
           +  + P+ +   T+LS
Sbjct: 532 E--MDPNDVGTYTLLS 545



 Score = 59.3 bits (142), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 61/110 (55%), Gaps = 3/110 (2%)

Query: 434 LENGRQLHAQLVHS--GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
           L+ G+ +H+ L+ +    ++S+   N+LI  YA+   V  A+ +F+ MP  + VSW+A++
Sbjct: 45  LKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRMPERNVVSWSALM 104

Query: 492 AALGQHGNGARAIELYEQMLKEG-ILPDRITFLTVLSACNHAGLVKEGRR 540
                +G   + I L + M+ EG + P+       +S+C   G V+EGR+
Sbjct: 105 TGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEEGRQ 154


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 252/646 (39%), Positives = 384/646 (59%), Gaps = 68/646 (10%)

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           ++P+   ++ +L+    +  + KQ   +H  +  S       +LN ++++Y KC S    
Sbjct: 101 LEPERTLYSKMLNKCTYL-RKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGS---- 155

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                +  A+ +FD+MP +D +SWT +++GY ++     A                    
Sbjct: 156 -----LEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFP--------------- 195

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
                  KML L  Q +EFT +S++ A         G+Q+HA+ L    K   + ++ V 
Sbjct: 196 -------KMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSL----KYGYDMNVHVG 244

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
           ++L+ +Y +   + EA+ IFN +  +++VSWNA                           
Sbjct: 245 SSLLDMYARWAHMREAKVIFNSLAAKNVVSWNA--------------------------- 277

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
               +I+G A+ G GE  ++LF QM  +GF+P  + ++   T+CA  G+LE G+ +HA +
Sbjct: 278 ----LIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHV 333

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
           + SG       GN LI MYA+ G ++ A  VF  +   D VSWN++I+   QHG GA A+
Sbjct: 334 IKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEAL 393

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
           +L+EQMLK  + P+ ITFL+VL+AC+H+GL+ EG+ YFE M   + I     H+   +DL
Sbjct: 394 QLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMK-KHKIEAQVAHHVTVVDL 452

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624
           L RAG+ +EA   I+ +P KP+A +W ALL  CR+H N+DLG+ AAEQ+F+L PH +G +
Sbjct: 453 LGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPH 512

Query: 625 VLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVY 684
           VLLSN+YA+ GR  DAA+VRK+M++ GVKKEP CSW+E++N+VHVF+ +D +HP  + + 
Sbjct: 513 VLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQ 572

Query: 685 KYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVL 744
           +  E++  +++++GYVPDT  VL  M    +E  L  HSEKLA+AF ++K P G T+R+ 
Sbjct: 573 RMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIK 632

Query: 745 KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KN+RICGDCH+AFKF S+V+GREI+VRD  RFHHF  G CSC DYW
Sbjct: 633 KNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 678



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 112/480 (23%), Positives = 204/480 (42%), Gaps = 101/480 (21%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R++HAH+ SS F+    ++N ++++Y K   L  A+ LFD++P  D+V+ T LI+ YS 
Sbjct: 124 GRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQ 183

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
           S                                      A+ LF  M     +P+ FT +
Sbjct: 184 SGQAS---------------------------------EALALFPKMLHLGFQPNEFTLS 210

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           S+L A       +    Q+H   +K G  +   V ++L+ +Y +            M  A
Sbjct: 211 SLLKASG-TGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAH---------MREA 260

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           + +F+ +  ++ +SW  ++ G+ +            G  E+V           +   L+M
Sbjct: 261 KVIFNSLAAKNVVSWNALIAGHARK-----------GEGEHV-----------MRLFLQM 298

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
           L    +   FTY+SV +ACA+SG    GK VHA+++++  +P       + N L+ +Y K
Sbjct: 299 LRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAY----IGNTLIDMYAK 354

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
            G + +A+ +F ++ ++D+VSWN+I+S Y   GL                          
Sbjct: 355 SGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGL-------------------------- 388

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL 453
                G E L+LF QM     +P +  F   +T+C+  G L+ G+     +     ++ +
Sbjct: 389 -----GAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQV 443

Query: 454 SAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           +    ++ +  R G +  AN     MP    +  W A++ +   H N    +   EQ+ +
Sbjct: 444 AHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFE 503



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 157/340 (46%), Gaps = 51/340 (15%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLI--------DIYCKSLKLVYARTLFDEIPQPDIV 82
           +S A ++   M+  GF+P E  ++ L+        D + + L     +  +D     ++ 
Sbjct: 187 ASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDM----NVH 242

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR 142
             ++L+  Y+   +++ A+ +FN   L  ++ V +NA+I  ++    G   + LF  M R
Sbjct: 243 VGSSLLDMYARWAHMREAKVIFNS--LAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLR 300

Query: 143 DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSP 202
              +P +FT++SV +A A     E Q   +H  V+KSG      + N LI +Y K  S  
Sbjct: 301 QGFEPTHFTYSSVFTACASSGSLE-QGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGS-- 357

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL 262
                  +  A++VF  + ++D +SW ++++GY ++     A +  +             
Sbjct: 358 -------IKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFE------------- 397

Query: 263 ISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
                    +ML  ++Q +E T+ SV++AC++SGL   G+    Y      K   E  + 
Sbjct: 398 ---------QMLKAKVQPNEITFLSVLTACSHSGLLDEGQ----YYFELMKKHKIEAQVA 444

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSA 361
            +  +V L  + G++NEA     +MP +   + W A+L +
Sbjct: 445 HHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGS 484


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 281/788 (35%), Positives = 418/788 (53%), Gaps = 83/788 (10%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + D +    LI+ Y   D++  AR +F     + R+ V +NAMI AY+ N +   A+ L+
Sbjct: 39  ERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLY 98

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
             M    +  D+ TF SVL A + +     Q  ++H  V  SG   F S+ NAL+++Y +
Sbjct: 99  WRMNLQGLGTDHVTFVSVLGACSSLA----QGREIHNRVFYSGLDSFQSLANALVTMYAR 154

Query: 198 CVS-------------------SPFVSSRSLMG---AARRVFDEM--------------- 220
             S                   +  + + S  G    A R+F EM               
Sbjct: 155 FGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDMKPNSTTYINVI 214

Query: 221 ---------PE--------------RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
                    PE               D +  T ++  Y K      ARE  D M +   V
Sbjct: 215 SGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMV 274

Query: 258 AWNALISGYVH----RELKMLMLRIQLDEF-----TYTSVISACANSGLFRLGKQVHAYL 308
           +WN +I  YV      E   L  ++ ++ F     T+ S++ AC++      G+ VH+++
Sbjct: 275 SWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHI 334

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL- 367
           L    +   +  + V  ALV +Y KCG + EAR +FN M  RD V+W+ ++ AY S G  
Sbjct: 335 L----ERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYG 390

Query: 368 --IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR-LEGFKPCDYAFAGA 424
               +A+ +F+ +  R+ + W  MI+   QNG     +K+F +M    G KP    F   
Sbjct: 391 KDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAV 450

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           + +CA LG L   + LHAQ+  S  +S++   N LI MYARCG +E A  +F        
Sbjct: 451 LEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTV 510

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
           VSW AM+AA  Q+G  A A++L+++M  EG+ PD +T+ ++L  C H G +++G RYF  
Sbjct: 511 VSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTD 570

Query: 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
           M   +G+ P  DH+A  +DLL R+G+  +AK++++S+PF+P    W   L  CRIHG ++
Sbjct: 571 MAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLE 630

Query: 605 LGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVD 664
           LG  AAE++++L P     Y+ +SN+YA  G W+  A VRK M +RG+KK PG S+IEVD
Sbjct: 631 LGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVD 690

Query: 665 NKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSE 724
            K+H F      HP    + + L +L   MR  GYVPDTK VLHD+   +KE  L  HSE
Sbjct: 691 GKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSE 750

Query: 725 KLAVAFGLMKLPG-GATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHF-RDG 782
           K+A+AFGL+   G G  +RV+KNLR+C DCH A KF++++ GR+I++RD  RFH F  DG
Sbjct: 751 KMAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIILRDCNRFHRFSSDG 810

Query: 783 KCSCGDYW 790
           KCSCGDYW
Sbjct: 811 KCSCGDYW 818



 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 121/481 (25%), Positives = 206/481 (42%), Gaps = 93/481 (19%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R +HA ++++GF     +   LI++Y K      AR +FD++ + D+V+   +I     
Sbjct: 226 GRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIG---- 281

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                                         Y  N + H A+EL++ +  +  K    TF 
Sbjct: 282 -----------------------------CYVQNGDFHEALELYQKLDMEGFKRTKATFV 312

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           S+L A +  V+   Q   +H  +++ G     +V  AL+++Y KC S         +  A
Sbjct: 313 SILGACS-SVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGS---------LEEA 362

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDY-LDA--AREFLDGMSENVGVAWNALISGYVHRE 270
           R+VF+ M  RD ++W+T++  Y  N Y  DA  AR+  D +     + WNA+I+ YV   
Sbjct: 363 RKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNG 422

Query: 271 LKMLMLRI----------QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
             +  ++I          + D  T+ +V+ ACA+ G     K +HA +  +E     E +
Sbjct: 423 CAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESEL----ESN 478

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           + V N L+ +Y +CG + EA  +F    E+ +VSW A+++A+                  
Sbjct: 479 VVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAF------------------ 520

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
                        +Q G   E L LF +M LEG KP D  +   +  C   G+LE G + 
Sbjct: 521 -------------SQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRY 567

Query: 441 HAQLVH-SGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHG 498
              +    G   +     A++ +  R G +  A  +  +MP   D V+W   + A   HG
Sbjct: 568 FTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHG 627

Query: 499 N 499
            
Sbjct: 628 K 628



 Score =  139 bits (350), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 104/358 (29%), Positives = 173/358 (48%), Gaps = 46/358 (12%)

Query: 334 CGKVNEARDIFNQMP----ERDLVSWNAILSAYVSAGLIDEAKSLFEAM--RERNLLSWT 387
           CG V E R +  ++     ERD +  NA++S Y     + +A+S+FE+M  R+RN++SW 
Sbjct: 20  CGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWN 79

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447
            MI+  AQNG+  E L L+ +M L+G       F   + +C+   +L  GR++H ++ +S
Sbjct: 80  AMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS---SLAQGREIHNRVFYS 136

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
           G DS  S  NAL+TMYAR G V  A  +F ++   D  SWNA+I A  Q G+ + A+ ++
Sbjct: 137 GLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIF 196

Query: 508 EQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY--------FET-------MHGPYGIP 552
           ++M K  + P+  T++ V+S  +   ++ EGR+         F++       +   YG  
Sbjct: 197 KEM-KCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYG-K 254

Query: 553 PGEDHYAR----------------FIDLLCRAGKFSEAKDV---IDSLPFKPSAPIWEAL 593
            G  H AR                 I    + G F EA ++   +D   FK +   + ++
Sbjct: 255 CGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSI 314

Query: 594 LAGCRIHGNIDLGIQAAEQLFQL-MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650
           L  C     +  G      + +  +         L NMYA  G  ++A +V   M++R
Sbjct: 315 LGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNR 372



 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 112/419 (26%), Positives = 191/419 (45%), Gaps = 54/419 (12%)

Query: 8   YIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLV 67
           + RT A  + S L  C     +     R VH+H++  G      +   L+++Y K   L 
Sbjct: 304 FKRTKAT-FVSILGACSSVKALAQ--GRLVHSHILERGLDSEVAVATALVNMYAKCGSLE 360

Query: 68  YARTLFDEIPQPDIVARTTLIAAYSAS---DNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
            AR +F+ +   D VA +TLI AY+++    + + AR++F++  L  RDT+ +NAMIT Y
Sbjct: 361 EARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDR--LGSRDTICWNAMITTY 418

Query: 125 SHNSNGHAAIELFRDMR-RDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGL 183
             N    AA+++FR+M     +KPD  TF +VL A A +     +   +H  + +S    
Sbjct: 419 VQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASL-GRLSEVKALHAQISESELES 477

Query: 184 FTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK-NDYLD 242
              V N LI++Y +C S         +  A R+F    E+  +SWT M+  + +   Y +
Sbjct: 478 NVVVTNTLINMYARCGS---------LEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAE 528

Query: 243 AAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGK 302
           A    LD   E                   M +  ++ D+ TYTS++  C + G    G 
Sbjct: 529 A----LDLFQE-------------------MDLEGVKPDDVTYTSILFVCTHGGSLEQGW 565

Query: 303 QVHAYL--LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAIL 359
           +    +  L   A     F+     A+V L  + G++ +A+++   MP E D V+W   L
Sbjct: 566 RYFTDMAELHGLAPTADHFA-----AMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFL 620

Query: 360 SAYVSAGLIDEAKSLFEAMRERNLLS---WTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           +A    G ++  ++  E + E +  S   +  M +  A +G  E+   +  +M   G K
Sbjct: 621 TACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLK 679



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 105/214 (49%), Gaps = 9/214 (4%)

Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
           +P +  F   + SC+  G +  GR LH ++  S ++     GNALI+MY +C  +  A  
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 475 VFNTMP--NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
           VF +M     + VSWNAMIAA  Q+G+   A+ LY +M  +G+  D +TF++VL AC+  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 533 GLVKE-GRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
              +E   R F +     G+   +      + +  R G   +AK +  SL  +     W 
Sbjct: 124 AQGREIHNRVFYS-----GLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETS-WN 177

Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYV 625
           A++      G+    ++  +++   M  ++ TY+
Sbjct: 178 AVILAHSQSGDWSGALRIFKEMKCDMKPNSTTYI 211


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 278/788 (35%), Positives = 408/788 (51%), Gaps = 134/788 (17%)

Query: 25  PRNPITSSLAR--------SVHAHMISSGFKPREHIINRLIDIYCKSL--KLVYARTLFD 74
           P NP T  L +         +HAH+I +    +  +   L++     L   + YA ++F 
Sbjct: 23  PENPKTLILEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFR 82

Query: 75  EIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAI 134
           +I +PD  A                                 YN MI  ++   + H AI
Sbjct: 83  QIDEPDSPA---------------------------------YNIMIRGFTLKQSPHEAI 109

Query: 135 ELFRDMRRDDVKPDNFTFTSVL---SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
            LF++M  + V+PD FTF  +L   S L  + E E    Q+H  ++K G G    V N L
Sbjct: 110 LLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGE----QIHALIMKCGFGSHGFVKNTL 165

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           I +Y  C           +  ARRVFDE                               M
Sbjct: 166 IHMYANC---------GEVEVARRVFDE-------------------------------M 185

Query: 252 SENVGVAWNALISGY---------VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGK 302
           SE     WN++ +GY         V    +ML L I+ DE T  SV++AC       LG+
Sbjct: 186 SERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGE 245

Query: 303 QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY 362
            ++ Y+     K  P        +LV +Y KCG+V                         
Sbjct: 246 WINRYVEEKGLKGNPTLI----TSLVDMYAKCGQV------------------------- 276

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
                 D A+ LF+ M  R++++W+ MISG +Q     E L LF +M+     P +    
Sbjct: 277 ------DTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMV 330

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
             ++SCA LGALE G+ +H  +       +++ G AL+  YA+CG VE++  VF  MP  
Sbjct: 331 SILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVK 390

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
           + +SW  +I  L  +G G +A+E +  ML++ + P+ +TF+ VLSAC+HAGLV EGR  F
Sbjct: 391 NVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLF 450

Query: 543 ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
            +M   +GI P  +HY   +D+L RAG   EA   I ++P +P+A IW  LLA C++H N
Sbjct: 451 VSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKN 510

Query: 603 IDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIE 662
           +++G ++ +QL  L P H+G Y+LLSN+YA++GRW+DA +VR  M+++G+KK PGCS IE
Sbjct: 511 VEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIE 570

Query: 663 VDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTH 722
           +D  +H F  +D  H +++ +Y  +E ++ +++  GYVP+T     D E D KE ++S H
Sbjct: 571 LDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAGYVPNTAEARLDAEEDDKESSVSHH 630

Query: 723 SEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDG 782
           SEKLA+AFGL+K P G T+R+ KNLR+C DCHNA K +SKV  REIVVRD  RFHHF++G
Sbjct: 631 SEKLAIAFGLIKSPPGTTIRITKNLRVCTDCHNATKLVSKVFNREIVVRDRTRFHHFKEG 690

Query: 783 KCSCGDYW 790
            CSC DYW
Sbjct: 691 SCSCNDYW 698



 Score =  129 bits (323), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 103/468 (22%), Positives = 196/468 (41%), Gaps = 72/468 (15%)

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL----MGA 212
           ++++L  E  K  +   C  ++    +   ++   + +  K   +   S+  L    M  
Sbjct: 17  TSISLFPENPKTLILEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDY 76

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A  +F ++ E D  ++  M+ G+        A      M EN                  
Sbjct: 77  AVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHEN------------------ 118

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                +Q DEFT+  ++  C+       G+Q+HA +++     +  F   V N L+ +Y 
Sbjct: 119 ----SVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKC-GFGSHGF---VKNTLIHMYA 170

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
            CG+V  AR +F++M ER++ +WN++ + Y  +G                  +W      
Sbjct: 171 NCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSG------------------NW------ 206

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
                  EE +KLF +M     +  +      +T+C  L  LE G  ++  +   G   +
Sbjct: 207 -------EEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGN 259

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
            +   +L+ MYA+CG V+ A  +F+ M   D V+W+AMI+   Q      A++L+ +M K
Sbjct: 260 PTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQK 319

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRR---YFETMHGPYGIPPGEDHYARFIDLLCRAG 569
             I P+ IT +++LS+C   G ++ G+    + +       +  G       +D   + G
Sbjct: 320 ANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLG----TALMDFYAKCG 375

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
               + +V   +P K +   W  L+ G   +G    G +A E  + ++
Sbjct: 376 SVESSIEVFGKMPVK-NVLSWTVLIQGLASNGQ---GKKALEYFYLML 419


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 268/744 (36%), Positives = 413/744 (55%), Gaps = 73/744 (9%)

Query: 51  HIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLK 110
           H+  RLI +         AR LFD IPQPD    +TL                       
Sbjct: 13  HLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTL----------------------- 49

Query: 111 MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM 170
                     I+A + +   + AI+++  ++   +KPD   F +   A A +  +  +  
Sbjct: 50  ----------ISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACA-VSGDALRVK 98

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           ++H    + G      V NALI  Y KC           +  ARRVFD++  RD +SWT+
Sbjct: 99  EVHDDATRCGVMSDVFVGNALIHAYGKC---------KCVEGARRVFDDLVVRDVVSWTS 149

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           + + YVK  +    R+ +D   E   + W+                 ++ +  T +S++ 
Sbjct: 150 LSSCYVKCGF---PRKGMDVFRE---MGWSG----------------VKPNPMTVSSILP 187

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           ACA     + GK++H + +R         +L V +ALV+LY KC  V EAR +F+ MP R
Sbjct: 188 ACAELKDLKSGKEIHGFAVRHGMV----VNLFVCSALVSLYAKCLSVREARMVFDLMPHR 243

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL----LSWTVMISGLAQNGYGEEGLKLF 406
           D+VSWN +L+AY      ++  SLF  M    +     +W  +I G  +NG  EE +++F
Sbjct: 244 DVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMF 303

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
            +M+  GFKP +   +  + +C+    L  G+++H  +        L++  AL+ MYA+C
Sbjct: 304 RKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKC 363

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G +  +  VF+ M   D V+WN MI A   HGNG  A+ L+++ML   + P+ +TF  VL
Sbjct: 364 GDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVL 423

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
           S C+H+ LV+EG + F +M   + + P  +HY+  +D+  RAG+ +EA   I  +P +P+
Sbjct: 424 SGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPT 483

Query: 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKL 646
           A  W ALLA CR++ N++L   +A++LF++ P++ G YV L N+      W +A++VR L
Sbjct: 484 ASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRIL 543

Query: 647 MRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFV 706
           M++RG+ K PGCSW++V NKVH F+V D ++ E+  +Y +L++LV +M+  GY PDT +V
Sbjct: 544 MKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYV 603

Query: 707 LHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGR 766
           L D++ ++K  +L  HSEKLAVAFG++ L G +T+RV KNLRICGDCHNA K+MSKVVG 
Sbjct: 604 LQDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGV 663

Query: 767 EIVVRDGKRFHHFRDGKCSCGDYW 790
            IVVRD  RFHHF++G CSC D W
Sbjct: 664 IIVVRDSLRFHHFKNGNCSCKDLW 687



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 106/425 (24%), Positives = 178/425 (41%), Gaps = 66/425 (15%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +H   +  G      + + L+ +Y K L +  AR +FD +P  D+V+   ++ AY  
Sbjct: 198 GKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFK 257

Query: 94  SDNVKLAREMFNKTPLKMR------DTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147
           +   +    +F    LKM       D   +NA+I     N     A+E+FR M++   KP
Sbjct: 258 NKEYEKGFSLF----LKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKP 313

Query: 148 DNFTFTSVLSALALIVEEEKQCMQMHCTVVKS-GTGLFTSVLNALISVYVKCVSSPFVSS 206
           +  T +S+L A +   E  +   ++HC V +    G  TS   AL+ +Y KC        
Sbjct: 314 NEITISSILPACSF-SENLRMGKEIHCYVFRHWKVGDLTST-TALLYMYAKCGD------ 365

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              +  +R VFD M  +D ++W TM+     +     A    D                 
Sbjct: 366 ---LNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFD----------------- 405

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE-AKPTPEFSLPVNN 325
                KML+ R+Q +  T+T V+S C++S L   G Q+   + R    +P         +
Sbjct: 406 -----KMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHY----S 456

Query: 326 ALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA---YVSAGLID-EAKSLFEAMRE 380
            +V +Y + G++NEA      MP E    +W A+L+A   Y +  L    AK LFE +  
Sbjct: 457 CVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFE-IEP 515

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
            N  ++  + + L       E  ++   M+  G           IT   G   L+ G ++
Sbjct: 516 NNPGNYVSLFNILVTAKMWSEASQVRILMKERG-----------ITKTPGCSWLQVGNKV 564

Query: 441 HAQLV 445
           H  +V
Sbjct: 565 HTFVV 569


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 272/763 (35%), Positives = 407/763 (53%), Gaps = 103/763 (13%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           T ++   +H H+I  G++    + N L+D YCK+  L  A  LF                
Sbjct: 155 TKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLF---------------- 198

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
                      + M NK      DTV +N+++T YS+      AIELF ++    +KP +
Sbjct: 199 -----------KHMLNK------DTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSD 241

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           FTF ++LSA A+ +++ K   Q+H  V+K+       V NAL+  Y         S    
Sbjct: 242 FTFAALLSA-AVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYY---------SKHDQ 291

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +    ++F EMPE D +S+  ++T Y                      AWN         
Sbjct: 292 VDEVGKLFYEMPELDGISYNVVITSY----------------------AWNGQFKESFDL 329

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
             K+   R    +F + +++S   +S   R+G+Q+H   +   A     F   V NALV 
Sbjct: 330 FRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGAN----FESRVENALVD 385

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           +Y KC    EA+ I                               F+ +  ++ + WT M
Sbjct: 386 MYAKCNGDKEAQKI-------------------------------FDNIACKSTVPWTAM 414

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA-FAGAITSCAGLGALENGRQLHAQLVHSG 448
           IS   Q G  EEG+ +FS MR  G  P D A FA  + +CA L ++  GRQLH+ L+ SG
Sbjct: 415 ISAYVQKGKHEEGINVFSDMRRTGV-PADQATFASILRACANLASISLGRQLHSLLIRSG 473

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
           + S++ +G+AL+  YA+CG +  A   F  MP  +SVSWNA+I+A  Q+GN    +  ++
Sbjct: 474 FMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQ 533

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568
           QM++ G  PD ++FL+VLSAC+H G V+E   +F +M   Y + P  +HY   +D+LCR 
Sbjct: 534 QMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRN 593

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP-HHAGTYVLL 627
           G+F EA+ ++  +PF+PS  +W ++L  CRIH N +L  +AA++LF +     A  Y+ +
Sbjct: 594 GRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINM 653

Query: 628 SNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYL 687
           SN+YA  G+WD+ A+V+K MRDRGV+K P  SW+E+ ++ HVF  +D +HPE + + + +
Sbjct: 654 SNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKI 713

Query: 688 EQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNL 747
             L  EM K GY PDT   LHD++   K  +L  HSE+ A+AF LM  P G+ + V+KNL
Sbjct: 714 NALSKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNL 773

Query: 748 RICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           R C DCH A K +S++V REI+VRD  RFHHF+DG CSCGDYW
Sbjct: 774 RACTDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  194 bits (493), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 139/579 (24%), Positives = 259/579 (44%), Gaps = 71/579 (12%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           + AH++ +GF P     N  ++ + +   LV+A  +FD++P  + ++   +I+ +     
Sbjct: 30  IDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGK 89

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
           +  ARE+F+   +  R  V +  +I  Y  ++    A  L+ DMRR  ++PD  T  ++L
Sbjct: 90  LSKARELFDG--MVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLL 147

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
           S    + E +   +Q+H  V+K G      V N+L+  Y K            +  A ++
Sbjct: 148 SGFGEL-ETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKT---------HCLYLASQL 197

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLML 276
           F  M  +D +++ ++MTGY      + A E                        L++   
Sbjct: 198 FKHMLNKDTVTFNSLMTGYSNEGLNEEAIELF----------------------LELHNS 235

Query: 277 RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
            I+  +FT+ +++SA       + G+QVH ++L+T       +++ V NAL+  Y K  +
Sbjct: 236 GIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFV----WNVFVGNALLDYYSKHDQ 291

Query: 337 VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
           V+E   +F +MPE D +S+N ++++Y                               A N
Sbjct: 292 VDEVGKLFYEMPELDGISYNVVITSY-------------------------------AWN 320

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
           G  +E   LF +++   F    + FA  ++       L  GRQ+H Q +  G +      
Sbjct: 321 GQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVE 380

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
           NAL+ MYA+C   + A  +F+ +    +V W AMI+A  Q G     I ++  M + G+ 
Sbjct: 381 NALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVP 440

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
            D+ TF ++L AC +   +  GR+   ++    G        +  +D   + G  ++A  
Sbjct: 441 ADQATFASILRACANLASISLGRQ-LHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIK 499

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
               +P + S   W AL++    +GN+D  + + +Q+ Q
Sbjct: 500 SFGEMPERNSVS-WNALISAYAQNGNVDGTLNSFQQMIQ 537



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 88/226 (38%), Gaps = 59/226 (26%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           +AS L+ C   N  + SL R +H+ +I SGF    +  + L+D Y K   +  A   F E
Sbjct: 446 FASILRAC--ANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGE 503

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P+ + V+   LI+AY+ + NV                                    + 
Sbjct: 504 MPERNSVSWNALISAYAQNGNVD---------------------------------GTLN 530

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
            F+ M +   KPD+ +F SVLSA +            HC  V+     F    N++  +Y
Sbjct: 531 SFQQMIQSGYKPDSVSFLSVLSACS------------HCGFVEEALWHF----NSMTQIY 574

Query: 196 VKCVSSPFVSS-------RSLMGAARRVFDEMP-ERDELSWTTMMT 233
                    +S             A ++  EMP E  E+ W++++ 
Sbjct: 575 EVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLN 620



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 105/230 (45%), Gaps = 23/230 (10%)

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
           +L +   + A +V +G++ +    N  +  +   G +  A+ VF+ MP  +++S N MI+
Sbjct: 23  SLNSNHLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMIS 82

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552
              + G  ++A EL++ M++       +++  ++     +   KE  R +  M    GI 
Sbjct: 83  GHLKFGKLSKARELFDGMVERTA----VSWTILIGGYLQSNQSKEAFRLYADMRRG-GIE 137

Query: 553 PGEDHYARFIDLLCRAGKFSEAKDVIDS-------LPFKPSAPIWEALL-AGCRIHGNID 604
           P    Y   + LL   G+  E K+VI         L ++ +  +  +L+ A C+ H    
Sbjct: 138 PD---YVTLVTLLSGFGEL-ETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTH---- 189

Query: 605 LGIQAAEQLFQ-LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653
             +  A QLF+ ++     T+  L   Y+N G  ++A  +   + + G+K
Sbjct: 190 -CLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIK 238


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 266/674 (39%), Positives = 382/674 (56%), Gaps = 38/674 (5%)

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           L+  +R     PD     S L +       +     +H   V SG      V ++L+  Y
Sbjct: 7   LYHFLRHVSFPPDPHLLPSALKS----CPAQPLARALHAAAVVSGLAEDPFVASSLLHSY 62

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD-----G 250
           ++  ++         GAAR VFD MPE++ + W+ ++ GY      +AA   L+     G
Sbjct: 63  IRLGAT---------GAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAG 113

Query: 251 MSENVGVAWNALISGYVHRELKML-----MLRIQLDEFTYTSVISACANSGL-----FRL 300
           +  NV + WN L+SG ++R  + L     ++R+  + F   +   +CA S +       +
Sbjct: 114 VEPNV-ITWNGLVSG-LNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSV 171

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           GKQVH Y+++   +        V  AL+ +Y KCG+ +E   +F++    D+ S NA+++
Sbjct: 172 GKQVHGYVVKAGCR----LDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVA 227

Query: 361 AYVSAGLIDEAKSLFEAM----RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
                  + EA  LF        E N++SWT +++   QNG   E + LF  M+  G +P
Sbjct: 228 GLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEP 287

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
                   + + A + AL +GR  H   +  G+   +  G+AL+ MYA+CG    A  +F
Sbjct: 288 NSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIF 347

Query: 477 NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536
           + MP+ + VSWNAMI     HG+ A A++L+  M K    PD +TF  VL AC+ AGL +
Sbjct: 348 DAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTE 407

Query: 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           EGRRYF  M   +GI P  +HYA  + LL R+GK  EA D+I+ +PF+P + IW +LL  
Sbjct: 408 EGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGS 467

Query: 597 CRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEP 656
           CR++GN+ L   AAE+LFQL P +AG YVLLSN+YA+   WD   RVR  M++ G+KKE 
Sbjct: 468 CRVYGNVLLAEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEK 527

Query: 657 GCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKE 716
           GCSWIE+ NKVH+ L  D +HP   A+ + L QL +EM +LG+ P   FVLHD+E  +K+
Sbjct: 528 GCSWIEIKNKVHMLLAGDNSHPMMTAITEKLNQLTIEMNRLGFAPSRDFVLHDVEEQEKD 587

Query: 717 YALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRF 776
             L+ HSEKLAVA GL+    G  +RV+KNLRICGDCH A KF+S    REI VRD  RF
Sbjct: 588 NILAVHSEKLAVALGLISTRPGTPLRVIKNLRICGDCHEAMKFISSFEQREISVRDTNRF 647

Query: 777 HHFRDGKCSCGDYW 790
           HHF+DGKCSCGDYW
Sbjct: 648 HHFKDGKCSCGDYW 661



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 133/507 (26%), Positives = 227/507 (44%), Gaps = 83/507 (16%)

Query: 18  SQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP 77
           S L+ C P  P    LAR++HA  + SG      + + L+  Y +      AR++FD +P
Sbjct: 25  SALKSC-PAQP----LARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSVFDRMP 79

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMR------DTVFYNAMITAYSHNSNGH 131
           + ++V  + LIA YSA  + + A  +      +MR      + + +N +++  + +    
Sbjct: 80  EKNVVGWSALIAGYSARGDAEAAWGLLE----QMRSAGVEPNVITWNGLVSGLNRSGRAL 135

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
            A+     M  +   PD    +  LSA+   V+E     Q+H  VVK+G  L   V+ AL
Sbjct: 136 DAVTALVRMHSEGFFPDATGVSCALSAVG-DVKEVSVGKQVHGYVVKAGCRLDACVVTAL 194

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAA----REF 247
           I +Y KC  +  +          RVF E    D  S   ++ G  +N  +  A    REF
Sbjct: 195 IDMYGKCGRADEIV---------RVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREF 245

Query: 248 L-DGMSENVGVAWNALISGYVH--RELK-------MLMLRIQLDEFTYTSVISACANSGL 297
           +  G+  NV V+W ++++  V   R+L+       M  + ++ +  T   V+ A AN   
Sbjct: 246 ICRGVELNV-VSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAA 304

Query: 298 FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA 357
              G+  H + LR          + V +ALV +Y KCGK   AR IF+ MP R++VSWNA
Sbjct: 305 LMHGRSAHCFSLRKGFL----HDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNA 360

Query: 358 ILSAYVSAGLIDEAKSLFEAM----RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
           ++  Y   G    A  LF +M    ++ +L+++T ++   +Q G  EEG + F++M    
Sbjct: 361 MIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEM---- 416

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473
                                + G  +  ++ H            ++T+  R G ++ A 
Sbjct: 417 ---------------------QQGHGISPRMEHYA---------CMVTLLGRSGKLDEAY 446

Query: 474 CVFNTMP-NVDSVSWNAMIAALGQHGN 499
            + N MP   DS  W +++ +   +GN
Sbjct: 447 DLINEMPFEPDSCIWGSLLGSCRVYGN 473


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 272/777 (35%), Positives = 408/777 (52%), Gaps = 106/777 (13%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           + S L+LC  R  + +   R+VHA + + G  P       L ++Y K  +   AR +FD 
Sbjct: 228 FTSLLKLCAARADLAT--GRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDR 285

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P  D VA                                 +NA++  Y+ N    AA+ 
Sbjct: 286 MPARDRVA---------------------------------WNALVAGYARNGLAEAAVG 312

Query: 136 LFRDMRRDD-VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
           +   M+ +D  +PD  T  SVL A A   +    C ++H   V+ G     +V  A++ V
Sbjct: 313 MVVRMQEEDGERPDAVTLVSVLPACA-DAQALGACREVHAFAVRGGFDEQVNVSTAILDV 371

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKN-DYLDAAREFLDGMSE 253
           Y KC           + +AR+VFD M +R+ +SW  M+ GY +N D  +A   F   + E
Sbjct: 372 YCKC---------GAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGE 422

Query: 254 NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
            V V                        + +  + + AC   G    G++VH  L+R   
Sbjct: 423 GVDVT-----------------------DVSVLAALHACGELGFLDEGRRVHELLVRIGL 459

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
               E ++ V NAL+T+Y KC + + A  +F+++  +  VSWNA                
Sbjct: 460 ----ESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNA---------------- 499

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
                          MI G  QNG  E+ ++LFS+M+LE  KP  +     I + A +  
Sbjct: 500 ---------------MILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISD 544

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
               R +H   +    D  +    ALI MYA+CG V  A  +FN+  +   ++WNAMI  
Sbjct: 545 PLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHG 604

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
            G HG+G  A+EL+E+M   G +P+  TFL+VLSAC+HAGLV EG+ YF +M   YG+ P
Sbjct: 605 YGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEP 664

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
           G +HY   +DLL RAGK  EA   I  +P +P   ++ A+L  C++H N++L  ++A+++
Sbjct: 665 GMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRI 724

Query: 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVD 673
           F+L P     +VLL+N+YAN   W D ARVR  M  +G++K PG S +++ N++H F   
Sbjct: 725 FELEPEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSG 784

Query: 674 DTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLM 733
            T H +A+ +Y  L +L+ E++ +GYVPDT  + HD+E D K   L+THSEKLA+A+GL+
Sbjct: 785 STNHQQAKDIYARLAKLIEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAYGLI 843

Query: 734 KLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +   G T+++ KNLR+C DCHNA K +S V GREI++RD +RFHHF+DGKCSCGDYW
Sbjct: 844 RTAPGTTIQIKKNLRVCKDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 900


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 249/651 (38%), Positives = 381/651 (58%), Gaps = 58/651 (8%)

Query: 185 TSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAA 244
           T + N L+++Y K            +  AR++FDEM +RD  SW  M++ Y K+  ++  
Sbjct: 58  TFIHNRLLNLYAK---------SGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDL 108

Query: 245 REFLDGMSENVGVAWNALISGYVHRE---------LKMLMLRIQLDEFTYTSVISACANS 295
           R   D M     V++N +ISG+             L+M    ++  E+T+ SV++AC   
Sbjct: 109 RVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQL 168

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
              R GKQ+H  ++          ++ V NAL  LY +CG++++AR +F++M  R++V+W
Sbjct: 169 LDLRRGKQIHGRIIICNLGG----NVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTW 224

Query: 356 N-----------------------------------AILSAYVSAGLIDEAKSLFEAMRE 380
           N                                   ++L AY+ AG IDEA+ +F  +RE
Sbjct: 225 NLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIRE 284

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
           ++ + WT+MI G AQNG  E+ L LFS+M LE  +P  Y  +  ++SCA L +L +G+ +
Sbjct: 285 KDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVV 344

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           H +    G +  L   +AL+ MY +CGV   A  +F+TM   + VSWN+MI     +G  
Sbjct: 345 HGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQD 404

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
             A+ LYE ML+E + PD +TF+ VLSAC HAGLV+EG+ YF +M   +G+ P  DHYA 
Sbjct: 405 LEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYAC 464

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
            ++L  R+G   +A D+I S+  +P++ IW  +L+ C + G+I  G  AA  L +L P +
Sbjct: 465 MVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIELNPFN 524

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEA 680
           A  Y++LSNMYA  GRW D A +R LM+ + VKK    SWIE+DN+VH F+ DD  HP+A
Sbjct: 525 AVPYIMLSNMYAARGRWKDVASIRSLMKSKHVKKFSAYSWIEIDNEVHKFVADDRTHPDA 584

Query: 681 QAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT 740
           + ++  L +L+ ++++ G+ P+T  VLHD   D+K  +++ HSEKLA+A+GL+K P G T
Sbjct: 585 KIIHVQLNRLIRKLQEAGFSPNTNLVLHDFGEDEKLESINYHSEKLALAYGLIKKPHGVT 644

Query: 741 -VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            +R++KN+R C DCH   KF+S +  R +++RD  RFHHF +GKCSC DYW
Sbjct: 645 PIRIIKNIRTCADCHIFMKFVSNITRRPVILRDSNRFHHFVEGKCSCKDYW 695



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 149/552 (26%), Positives = 244/552 (44%), Gaps = 129/552 (23%)

Query: 34  ARSVHAHMISSGFKPREHII-NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           A+ + +HM    FKP +  I NRL+++Y KS ++ +AR LFDE+ Q D  +   +++ Y+
Sbjct: 41  AKRLKSHMHLHLFKPNDTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYA 100

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
            S  V+  R +F+  P   RD+V YN +I+ ++ N  G  A+ +F  M+++ +KP  +T 
Sbjct: 101 KSGLVEDLRVIFDNMP--SRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTH 158

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            SVL+A   ++ + ++  Q+H  ++    G    V NAL  +Y +C           +  
Sbjct: 159 VSVLNACTQLL-DLRRGKQIHGRIIICNLGGNVFVCNALTDLYARC---------GEIDQ 208

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKN---------------------------------- 238
           ARR+FD M  R+ ++W  M++GY+KN                                  
Sbjct: 209 ARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQ 268

Query: 239 -DYLDAAREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSV 288
             Y+D AR+    + E   V W  +I G               +ML+   + D +T +SV
Sbjct: 269 AGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSV 328

Query: 289 ISACANSGLFRLGKQVH--AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
           +S+CA       G+ VH  A+L+           L V++ALV +Y KCG   +A  IF+ 
Sbjct: 329 VSSCAKLASLYHGQVVHGKAFLMGVND------DLLVSSALVDMYCKCGVTRDAWTIFST 382

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
           M  R++VSWN+++  Y   G   EA SL+E M E NL                       
Sbjct: 383 MQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENL----------------------- 419

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
                   KP    F G +++C   G +E G++         Y  S+S  + L       
Sbjct: 420 --------KPDSVTFVGVLSACVHAGLVEEGKE---------YFCSMSDQHGL------- 455

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
                        P  D   +  M+   G+ G+  +A++L   M +E   P+ + + TVL
Sbjct: 456 ------------EPTPD--HYACMVNLFGRSGHMDKAVDLISSMSQE---PNSLIWTTVL 498

Query: 527 SACNHAGLVKEG 538
           S C   G +K G
Sbjct: 499 SVCVMKGDIKHG 510


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 278/753 (36%), Positives = 419/753 (55%), Gaps = 54/753 (7%)

Query: 49  REHIINRLID--IYCKSLKLVYARTL-----FDEIPQPDIVARTTLIAAYSASDNVKLAR 101
           R H I   ID     K LK V+AR L     FD    P   ++    +A S+   +  AR
Sbjct: 24  RNHQILSTIDKCSSSKQLKEVHARMLRTGLFFD----PFSASKLFTASALSSFSTLDYAR 79

Query: 102 EMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM--RRDDVKPDNFTFTSVLSAL 159
            +F++ P    +   +N +I AY+ +S+   +  +F D+  + +D+ P+ FTF  V+ A 
Sbjct: 80  NLFDQIP--QPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDL-PNKFTFPFVIKA- 135

Query: 160 ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDE 219
           A  ++  +    +H   +K   G+   +LN+L+  Y  C           +  A R+F  
Sbjct: 136 ASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGD---------LSMAERLFKG 186

Query: 220 MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQ 279
           +  +D +SW +M++ + + +  + A E                        LKM    + 
Sbjct: 187 ISCKDVVSWNSMISAFAQGNCPEDALELF----------------------LKMERENVM 224

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            +  T   V+SACA       G+ V +Y+ R   K      L + NA++ +Y KCG V++
Sbjct: 225 PNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIK----VDLTLCNAMLDMYTKCGSVDD 280

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
           A+ +F++MPERD+ SW  +L  Y   G  D A+ +F AM  + + +W V+IS   QNG  
Sbjct: 281 AQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKP 340

Query: 400 EEGLKLFSQMRLEGF-KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
           +E L +F++++L    KP +      +++CA LGA++ G  +H  +   G   +    ++
Sbjct: 341 KEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISS 400

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           L+ MYA+CG +E A  VF ++   D   W+AMIA LG HG G  AI+L+ +M +  + P+
Sbjct: 401 LVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPN 460

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVI 578
            +TF  VL AC+HAGLV EGR +F  M   YG+ P   HYA  +D+L RAG   EA ++I
Sbjct: 461 SVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELI 520

Query: 579 DSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWD 638
           + +   PSA +W ALL  C +H N++LG  A++QL +L P + G  VLLSN+YA  GRW+
Sbjct: 521 NEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWE 580

Query: 639 DAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLG 698
             + +RKLMRD  +KKEPGCS IE +  VH FLV D  HP +  +Y  LE++  +++ +G
Sbjct: 581 KVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLSSNIYSKLEEIATKLKSVG 640

Query: 699 YVPDTKFVLHDMESDQ-KEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAF 757
           Y P+   +L  +E D  KE ALS HSEKLA+AFGL+ L     +RV+KNLRICGDCH   
Sbjct: 641 YEPNKSHLLQLIEEDDLKEQALSLHSEKLAIAFGLVTLAPSQPIRVVKNLRICGDCHAFA 700

Query: 758 KFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           K +S+V  R+I++RD  RFHHFRDG CSC DYW
Sbjct: 701 KLVSRVYDRDILLRDRYRFHHFRDGHCSCMDYW 733



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 144/569 (25%), Positives = 226/569 (39%), Gaps = 134/569 (23%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSL--KLVYARTLFDEIPQPDIVARTTL 87
           +S   + VHA M+ +G        ++L      S    L YAR LFD+IPQP++    TL
Sbjct: 37  SSKQLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTL 96

Query: 88  IAAYSASDN---------------------------VKLAREM--------FNKTPLKMR 112
           I AY++S +                           +K A E+         +   +K+ 
Sbjct: 97  IRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLS 156

Query: 113 ---DTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA--------- 160
              D    N+++  Y    +   A  LF+ +   DV     ++ S++SA A         
Sbjct: 157 FGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDV----VSWNSMISAFAQGNCPEDAL 212

Query: 161 --LIVEEEKQCMQMHCTVV-----------------------KSGTGLFTSVLNALISVY 195
              +  E +  M    T+V                       + G  +  ++ NA++ +Y
Sbjct: 213 ELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMY 272

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            KC S         +  A+++FDEMPERD  SWT M+ GY K    DAAR   + M    
Sbjct: 273 TKCGS---------VDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKE 323

Query: 256 GVAWNALISGYVH----RELKMLMLRIQL------DEFTYTSVISACANSGLFRLGKQVH 305
             AWN LIS Y      +E   +   +QL      DE T  S +SACA  G   LG  +H
Sbjct: 324 IAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIH 383

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365
            Y+ R         +  + ++LV +Y KCG + +A ++F  + ERD+  W+A        
Sbjct: 384 VYIKREGIV----LNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSA-------- 431

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425
                                  MI+GL  +G G+  + LF +M+    KP    F   +
Sbjct: 432 -----------------------MIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVL 468

Query: 426 TSCAGLGALENGRQ-LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
            +C+  G ++ GR   H      G    +     ++ +  R G +E A  + N M    S
Sbjct: 469 CACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPS 528

Query: 485 VS-WNAMIAALGQHGNGARAIELYEQMLK 512
            S W A++ A   H N        +Q+LK
Sbjct: 529 ASVWGALLGACSLHMNVELGELASDQLLK 557



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 172/383 (44%), Gaps = 42/383 (10%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
             R V +++   G K    + N ++D+Y K   +  A+ LFDE+P+ D+ + T ++  Y+
Sbjct: 245 FGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYA 304

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV-KPDNFT 151
              +   AR +FN  P+K  +   +N +I+AY  N     A+ +F +++   + KPD  T
Sbjct: 305 KMGDYDAARLVFNAMPVK--EIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVT 362

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             S LSA A +   +     +H  + + G  L   ++++L+ +Y KC S         + 
Sbjct: 363 LVSTLSACAQLGAIDLGGW-IHVYIKREGIVLNCHLISSLVDMYAKCGS---------LE 412

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A  VF  + ERD   W+ M+ G   +    AA +    M E                  
Sbjct: 413 KALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEA----------------- 455

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                +++ +  T+T+V+ AC+++GL   G+ V  + +       PE  +     +V + 
Sbjct: 456 -----KVKPNSVTFTNVLCACSHAGLVDEGR-VFFHEMEPVYGVVPE--MKHYACMVDIL 507

Query: 332 WKCGKVNEARDIFNQMPERDLVS-WNAILSA---YVSAGLIDEAKSLFEAMRERNLLSWT 387
            + G + EA ++ N+M      S W A+L A   +++  L + A      +  RN  +  
Sbjct: 508 GRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIV 567

Query: 388 VMISGLAQNGYGEEGLKLFSQMR 410
           ++ +  A+ G  E+  +L   MR
Sbjct: 568 LLSNIYAKTGRWEKVSELRKLMR 590


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 264/731 (36%), Positives = 403/731 (55%), Gaps = 61/731 (8%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           ++     L+A YS   ++  AR++F++ P+   D V +N++I +Y+       A+E+F  
Sbjct: 161 NVFVGNALVAMYSRCGSLSDARKVFDEMPV--WDVVSWNSIIESYAKLGKPKMALEMFSK 218

Query: 140 MRRD-DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
           M  +   +PD+ T  +VL   A  V       Q H   V S       V N L+ +Y K 
Sbjct: 219 MTNEFGFRPDDITLVNVLPPCA-SVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAK- 276

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK-NDYLDAAREFLDGMSENVG- 256
                     +M  A  VF  MP +D +SW  M+ GY +   + DA R F     E +  
Sbjct: 277 --------FGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKM 328

Query: 257 --VAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
             V W+A ISGY  R L         +ML   I+ +E T  SV+S CA+ G    GK++H
Sbjct: 329 DVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIH 388

Query: 306 AYLLRTEAKPTPEFSLPVN---NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY 362
            Y ++             N   N L+ +Y KC KV+ AR +F+ +  +            
Sbjct: 389 CYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPK------------ 436

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG--FKPCDYA 420
                            ER++++WTVMI G +Q+G   + L+L S+M  E    +P  + 
Sbjct: 437 -----------------ERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFT 479

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDS-SLSAGNALITMYARCGVVEAANCVFNTM 479
            + A+ +CA L AL  G+Q+HA  + +  ++  L   N LI MYA+CG +  A  VF+ M
Sbjct: 480 ISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNM 539

Query: 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
              + V+W +++   G HG G  A+ ++E+M + G   D +T L VL AC+H+G++ +G 
Sbjct: 540 MEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGM 599

Query: 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI 599
            YF  M   +G+ PG +HYA  +DLL RAG+ + A  +I+ +P +P   +W ALL+ CRI
Sbjct: 600 EYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRI 659

Query: 600 HGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCS 659
           HG ++LG  AA+++ +L  ++ G+Y LLSNMYAN GRW D  R+R LMR +G+KK PGCS
Sbjct: 660 HGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCS 719

Query: 660 WIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYAL 719
           W+E       F V D  HP A+ +Y+ L   +  ++ +GYVP+T F LHD++ ++K+  L
Sbjct: 720 WVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKDIGYVPETGFALHDVDDEEKDDLL 779

Query: 720 STHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHF 779
             HSEKLA+A+G++  P GA +R+ KNLR+CGDCH AF +MS+++  EI++RD  RFHHF
Sbjct: 780 FEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHEIILRDSSRFHHF 839

Query: 780 RDGKCSCGDYW 790
           ++G CSC  YW
Sbjct: 840 KNGLCSCKGYW 850



 Score =  215 bits (547), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 165/601 (27%), Positives = 274/601 (45%), Gaps = 70/601 (11%)

Query: 26  RNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSL---KLVYARTLFDEIPQPDIV 82
           R  +T   A   H H+  S F      I       CK++   KL++ + L   I   ++ 
Sbjct: 3   RRLVTLRAAAKSHQHLKVSLFSTSALEITPPFIHKCKTISQVKLIHQKLLSFGILTLNLT 62

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR 142
           +   LI+ Y +   +  A  +  + P        +N++I +Y +N   +  +  F  M  
Sbjct: 63  SH--LISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHS 120

Query: 143 DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL--NALISVYVKCVS 200
               PDN+TF  V  A   I     +C      + +  TG  ++V   NAL+++Y +C S
Sbjct: 121 LSWTPDNYTFPFVFKACGEI--SSVRCGDSSHALSRV-TGFMSNVFVGNALVAMYSRCGS 177

Query: 201 SPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWN 260
                    +  AR+VFDEMP  D +SW +++  Y K      A E    M+   G    
Sbjct: 178 ---------LSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFG---- 224

Query: 261 ALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
                             + D+ T  +V+  CA+ G   LGKQ H + + +E       +
Sbjct: 225 -----------------FRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQ----N 263

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           + V N LV +Y K G ++EA  +F+ MP +D+VSWNA+++ Y   G  ++A  LFE M+E
Sbjct: 264 MFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQE 323

Query: 381 R----NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
                ++++W+  ISG AQ G G E L +  QM   G KP +      ++ CA +GAL +
Sbjct: 324 EKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMH 383

Query: 437 GRQLHA-------QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP--NVDSVSW 487
           G+++H         L  +G+       N LI MYA+C  V+ A  +F+++     D V+W
Sbjct: 384 GKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTW 443

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEG--ILPDRITFLTVLSACNHAGLVKEGRRYFETM 545
             MI    QHG+  +A+EL  +M +E     P+  T    L AC     +  G++    +
Sbjct: 444 TVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQ----I 499

Query: 546 HGPYGIPPGEDHYARF-----IDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
           H  Y +   ++    F     ID+  + G   +A+ V D++  + +   W +L+ G  +H
Sbjct: 500 HA-YALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNM-MEKNEVTWTSLMTGYGMH 557

Query: 601 G 601
           G
Sbjct: 558 G 558



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/405 (28%), Positives = 196/405 (48%), Gaps = 53/405 (13%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           T SL +  H   ++S       + N L+D+Y K   +  A T+F  +P  D+V+   ++A
Sbjct: 244 TRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVA 303

Query: 90  AYSA----SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
            YS      D V+L  +M  +  +KM D V ++A I+ Y+    G+ A+ + R M    +
Sbjct: 304 GYSQIGRFEDAVRLFEQM-QEEKIKM-DVVTWSAAISGYAQRGLGYEALGVCRQMLSSGI 361

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVV-------KSGTGLFTSVLNALISVYVKC 198
           KP+  T  SVLS  A  V       ++HC  +       K+G G    V+N LI +Y KC
Sbjct: 362 KPNEVTLISVLSGCA-SVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKC 420

Query: 199 VSSPFVSSRSLMGAARRVFDEMP--ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
                      +  AR +FD +   ERD ++WT M+ GY ++   + A E L  M E   
Sbjct: 421 KK---------VDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEED- 470

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
                               + + + FT +  + ACA+     +GKQ+HAY LR +    
Sbjct: 471 -------------------CQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAV 511

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
           P F   V+N L+ +Y KCG + +AR +F+ M E++ V+W ++++ Y   G  +EA  +FE
Sbjct: 512 PLF---VSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFE 568

Query: 377 AMRERNL----LSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKP 416
            MR        ++  V++   + +G  ++G++ F++M+ + G  P
Sbjct: 569 EMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSP 613



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 150/334 (44%), Gaps = 21/334 (6%)

Query: 333 KCGKVNEARDIFNQMPERDLVSWNA---ILSAYVSAGLIDEAKSLFEAM--RERNLLSWT 387
           KC  +++ + I  ++    +++ N    ++S Y+S G +  A SL       +  +  W 
Sbjct: 37  KCKTISQVKLIHQKLLSFGILTLNLTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWN 96

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447
            +I     NG   + L  F  M    + P +Y F     +C  + ++  G   HA    +
Sbjct: 97  SLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVT 156

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
           G+ S++  GNAL+ MY+RCG +  A  VF+ MP  D VSWN++I +  + G    A+E++
Sbjct: 157 GFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMF 216

Query: 508 EQMLKE-GILPDRITFLTVLSACNHAGLVKEGRRYF------ETMHGPYGIPPGEDHYAR 560
            +M  E G  PD IT + VL  C   G    G+++       E +   +      D YA+
Sbjct: 217 SKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAK 276

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF-QLMPH 619
           F       G   EA  V  ++P K     W A++AG    G  +  ++  EQ+  + +  
Sbjct: 277 F-------GMMDEANTVFSNMPVKDVVS-WNAMVAGYSQIGRFEDAVRLFEQMQEEKIKM 328

Query: 620 HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653
              T+    + YA  G   +A  V + M   G+K
Sbjct: 329 DVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIK 362



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 178/408 (43%), Gaps = 69/408 (16%)

Query: 34  ARSVHAHMISSGFKPREHIINRLI-------------DIYCKSLKLVYARTLFDEIPQPD 80
           A  V   M+SSG KP E  +  ++             +I+C ++K  Y   L       +
Sbjct: 349 ALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIK--YPMDLRKNGHGDE 406

Query: 81  IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
            +    LI  Y+    V +AR MF+    K RD V +  MI  YS + + + A+EL  +M
Sbjct: 407 NMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEM 466

Query: 141 RRDD--VKPDNFTFTSVLSALALI--VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
             +D   +P+ FT +  L A A +  +   KQ         ++   LF S  N LI +Y 
Sbjct: 467 FEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVS--NCLIDMYA 524

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           KC           +G AR VFD M E++E++WT++MTGY  + Y + A    +       
Sbjct: 525 KCGD---------IGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFE------- 568

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA--- 313
                          +M  +  +LD  T   V+ AC++SG+   G +   Y  R +    
Sbjct: 569 ---------------EMRRIGFKLDGVTLLVVLYACSHSGMIDQGME---YFNRMKTDFG 610

Query: 314 -KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLID-- 369
             P PE        LV L  + G++N A  +  +MP E   V W A+LS     G ++  
Sbjct: 611 VSPGPEHYA----CLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELG 666

Query: 370 --EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
              AK + E +   N  S+T++ +  A  G  ++  ++ S MR +G K
Sbjct: 667 EYAAKKITE-LASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIK 713


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 274/776 (35%), Positives = 407/776 (52%), Gaps = 104/776 (13%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           + S L+LC  R  + +   R+VHA + + G          L ++Y K  +   AR +FD 
Sbjct: 62  FTSLLKLCAARGDLAT--GRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDR 119

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P                                 +RD V +NA++  Y+ N     A+E
Sbjct: 120 MP---------------------------------VRDRVAWNALVAGYARNGLARMAME 146

Query: 136 LFRDMRRDD-VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
           +   M+ ++  +PD+ T  SVL A A          + H   ++SG     +V  A++  
Sbjct: 147 MVVRMQEEEGERPDSITLVSVLPACANARALAAC-REAHAFAIRSGLEELVNVATAILDA 205

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           Y KC           + AAR VFD MP ++ +SW  M+ GY +N     +RE L      
Sbjct: 206 YCKCGD---------IRAARVVFDWMPTKNSVSWNAMIDGYAQN---GDSREAL------ 247

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
                 AL +       +M+   + + + +  + + AC   G    G +VH  L+R    
Sbjct: 248 ------ALFN-------RMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRI--- 291

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
              + ++ V NAL+T+Y KC +V+ A  +F+++  R  VSWNA                 
Sbjct: 292 -GLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNA----------------- 333

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
                         MI G AQNG  E+ ++LF++M+LE  KP  +     I + A +   
Sbjct: 334 --------------MILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDP 379

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
              R +H   +    D  +    ALI MYA+CG V  A  +FN+      ++WNAMI   
Sbjct: 380 LQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGY 439

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
           G HG G  A+EL+E+M   GI+P+  TFL+VLSAC+HAGLV EGR YF +M   YG+ PG
Sbjct: 440 GSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPG 499

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
            +HY   +DLL RAGK  EA   I  +P  P   ++ A+L  C++H N++L  ++A+++F
Sbjct: 500 MEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIF 559

Query: 615 QLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDD 674
           +L P     +VLL+N+YAN   W D ARVR  M   G++K PG S I++ N++H F    
Sbjct: 560 ELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGS 619

Query: 675 TAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMK 734
           T H +A+ +Y  L +L+ E++ +GYVPDT  + HD+E D K   L+THSEKLA+AFGL++
Sbjct: 620 TNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAFGLIR 678

Query: 735 LPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
              G T+++ KNLR+C DCHNA K +S V GREI++RD +RFHHF+DGKCSCGDYW
Sbjct: 679 TAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 147/505 (29%), Positives = 222/505 (43%), Gaps = 80/505 (15%)

Query: 117 YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTV 176
           ++A + A +  S+  AA+  F  M      P   TFTS+L  L     +      +H  +
Sbjct: 27  HHARLRASAARSDLPAALAAFVAMSSAGAPPVLRTFTSLLK-LCAARGDLATGRAVHAQL 85

Query: 177 VKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV 236
              G         AL ++Y KC   P          ARRVFD MP RD ++W  ++ GY 
Sbjct: 86  AARGIDSEALAATALANMYAKC-RRP--------ADARRVFDRMPVRDRVAWNALVAGYA 136

Query: 237 KNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSG 296
           +N     A E +  M E  G                      + D  T  SV+ ACAN+ 
Sbjct: 137 RNGLARMAMEMVVRMQEEEGE---------------------RPDSITLVSVLPACANAR 175

Query: 297 LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWN 356
                ++ HA+ +R+      E  + V  A++  Y KCG +  AR +F+ MP ++ VSWN
Sbjct: 176 ALAACREAHAFAIRS----GLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWN 231

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
           A++  Y                               AQNG   E L LF++M  EG   
Sbjct: 232 AMIDGY-------------------------------AQNGDSREALALFNRMVEEGVDV 260

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
            D +   A+ +C  LG L+ G ++H  LV  G DS++S  NALITMY++C  V+ A+ VF
Sbjct: 261 TDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVF 320

Query: 477 NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536
           + +     VSWNAMI    Q+G    A+ L+ +M  E + PD  T ++V+ A        
Sbjct: 321 DELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPL 380

Query: 537 EGRRYFETMHGPYGIPPGEDH----YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592
           + R     +HG Y I    D         ID+  + G+ + A+ + +S   +     W A
Sbjct: 381 QAR----WIHG-YSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNS-ARERHVITWNA 434

Query: 593 LLAGCRIHGNIDLGIQAAEQLFQLM 617
           ++ G   HG    G +AA +LF+ M
Sbjct: 435 MIHGYGSHG---FG-KAAVELFEEM 455



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 113/256 (44%), Gaps = 20/256 (7%)

Query: 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALIT 461
            L  F  M   G  P    F   +  CA  G L  GR +HAQL   G DS   A  AL  
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML-KEGILPDRI 520
           MYA+C     A  VF+ MP  D V+WNA++A   ++G    A+E+  +M  +EG  PD I
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR----FIDLLCRAGKFSEAKD 576
           T ++VL AC +A  +   R         + I  G +         +D  C+ G    A+ 
Sbjct: 163 TLVSVLPACANARALAACREAH-----AFAIRSGLEELVNVATAILDAYCKCGDIRAARV 217

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA---- 632
           V D +P K S   W A++ G   +G+     + A  LF  M         +S + A    
Sbjct: 218 VFDWMPTKNSVS-WNAMIDGYAQNGD----SREALALFNRMVEEGVDVTDVSVLAALQAC 272

Query: 633 -NLGRWDDAARVRKLM 647
             LG  D+  RV +L+
Sbjct: 273 GELGCLDEGMRVHELL 288


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 279/781 (35%), Positives = 417/781 (53%), Gaps = 99/781 (12%)

Query: 36  SVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ---PDIVARTTLIAAY- 91
           SVHA + ++G      I N ++ +Y +   L  A  +FDE+ +    DIV+  +++AAY 
Sbjct: 148 SVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYV 207

Query: 92  ---SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPD 148
               +   +++A  M N   LK+R                                  PD
Sbjct: 208 QGGQSRTALRIAFRMGNHYSLKLR----------------------------------PD 233

Query: 149 NFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
             T  ++L A A +   +    Q+H   V++G      V NAL+S+Y KC         S
Sbjct: 234 AITLVNILPACASVFALQ-HGKQVHGFSVRNGLVDDVFVGNALVSMYAKC---------S 283

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV----GVAWNALIS 264
            M  A +VF+ + ++D +SW  M+TGY +    D+A      M E       + W+A+I+
Sbjct: 284 KMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIA 343

Query: 265 GYVHRE---------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           GY  +           +M +  ++ +  T  S++S CA+ G    GKQ HAY+++     
Sbjct: 344 GYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNL 403

Query: 316 T---PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
                E  L V N L+ +Y KC     AR IF+ +  +D                     
Sbjct: 404 NWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKD--------------------- 442

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM--RLEGFKPCDYAFAGAITSCAG 430
                   +N+++WTVMI G AQ+G   + LKLF+Q+  +    KP  +  + A+ +CA 
Sbjct: 443 --------KNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACAR 494

Query: 431 LGALENGRQLHAQLVHSGYDSS-LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
           LG L  GRQLHA  + +  +S  L  GN LI MY++ G ++AA  VF+ M   + VSW +
Sbjct: 495 LGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTS 554

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY 549
           ++   G HG G  A+ L++QM K G   D ITFL VL AC+H+G+V +G  YF  M   +
Sbjct: 555 LMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGF 614

Query: 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609
           GI PG +HYA  +DLL RAG+ +EA ++I ++  +P+A +W ALL+  RIH NI+LG  A
Sbjct: 615 GITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYA 674

Query: 610 AEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHV 669
           A +L +L   + G+Y LLSN+YAN  RW D AR+R LM+  G++K PGCSWI+       
Sbjct: 675 ASKLTELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTT 734

Query: 670 FLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVA 729
           F V D +HPE++ +Y  L  L+  ++ +GYVP T F LHD++ ++K   L  HSEKLAVA
Sbjct: 735 FFVGDRSHPESEQIYNLLLDLIKRIKDMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAVA 794

Query: 730 FGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
           +G++    G  +R+ KNLRICGDCH+A  ++S ++  EIV+RD  RFHHF+ G CSC  Y
Sbjct: 795 YGILTTAPGQPIRIHKNLRICGDCHSALTYISMIIDHEIVLRDSSRFHHFKKGSCSCRSY 854

Query: 790 W 790
           W
Sbjct: 855 W 855



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 127/490 (25%), Positives = 211/490 (43%), Gaps = 85/490 (17%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + VH   + +G      + N L+ +Y K  K+  A  +F+ I + D+V+   ++  YS 
Sbjct: 253 GKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQ 312

Query: 94  SDNVKLAREMF---NKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
             +   A  +F    +  +K+ D + ++A+I  Y+   +G  A+++FR M+   ++P+  
Sbjct: 313 IGSFDSALSLFKMMQEEDIKL-DVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVV 371

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS-------VLNALISVYVKCVSSPF 203
           T  S+LS  A  V       Q H  V+K+   L  +       VLN LI +Y KC S   
Sbjct: 372 TLASLLSGCA-SVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYR- 429

Query: 204 VSSRSLMGAARRVFDEMPERDE--LSWTTMMTGYVKN-DYLDAAREFLDGMSENVGVAWN 260
                    AR +FD +  +D+  ++WT M+ GY ++ +  DA + F     +   +  N
Sbjct: 430 --------VARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPN 481

Query: 261 ALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
           A                     FT +  + ACA  G  RLG+Q+HAY LR E +      
Sbjct: 482 A---------------------FTLSCALMACARLGELRLGRQLHAYALRNENESEV--- 517

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           L V N L+ +Y K G ++ AR +F+ M  R++VSW ++++ Y                  
Sbjct: 518 LYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGY------------------ 559

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR-Q 439
                          +G GEE L LF QM+  GF      F   + +C+  G ++ G   
Sbjct: 560 -------------GMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIY 606

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVV-EAANCVFNTMPNVDSVSWNAMIAALGQHG 498
            H  +   G          ++ +  R G + EA   + N      +V W A+++A   H 
Sbjct: 607 FHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHA 666

Query: 499 NGARAIELYE 508
           N    IEL E
Sbjct: 667 N----IELGE 672



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 108/416 (25%), Positives = 174/416 (41%), Gaps = 96/416 (23%)

Query: 259 WNALISGYVHRELKMLMLRIQL-------------DEFTYTSVISACANSGLFRLGKQVH 305
           WNALI     R +K+ +L   L             D +T+  V+ AC      R G  VH
Sbjct: 95  WNALI----RRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVH 150

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER---DLVSWNAILSAY 362
           A +           ++ + N++V +Y +CG +++A  +F+++ ER   D+VSWN+IL+AY
Sbjct: 151 AIVCANGLGS----NVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAY 206

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
           V  G      +L  A R  N  S                 LKL         +P      
Sbjct: 207 VQGG--QSRTALRIAFRMGNHYS-----------------LKL---------RPDAITLV 238

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
             + +CA + AL++G+Q+H   V +G    +  GNAL++MYA+C  +  AN VF  +   
Sbjct: 239 NILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKK 298

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
           D VSWNAM+    Q G+   A+ L++ M +E I  D IT+  V++     G   E    F
Sbjct: 299 DVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVF 358

Query: 543 ETMHGPYGIPP--------------------GEDHYAR---------------------- 560
             M   YG+ P                    G+  +A                       
Sbjct: 359 RQMQ-LYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNG 417

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPI-WEALLAGCRIHGNIDLGIQAAEQLFQ 615
            ID+  +   +  A+ + DS+  K    + W  ++ G   HG  +  ++   Q+F+
Sbjct: 418 LIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFK 473



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 152/327 (46%), Gaps = 31/327 (9%)

Query: 304 VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSAY 362
           VH Y   T + PT    +P    L++L  +C  +  A+    Q+        ++  + AY
Sbjct: 18  VHFYSTFTTSPPT----IP----LISLLRQCKTLINAKLAHQQIFVHGFTEMFSYAVGAY 69

Query: 363 VSAGLIDEAKSLFEAM--RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
           +  G   EA SL + +      +  W  +I    + G  ++ L  + QM+  G+ P  Y 
Sbjct: 70  IECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYT 129

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
           F   + +C  + +L +G  +HA +  +G  S++   N+++ MY RCG ++ A+ +F+ + 
Sbjct: 130 FPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVL 189

Query: 481 N---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL---PDRITFLTVLSACNHAGL 534
                D VSWN+++AA  Q G    A+ +  +M     L   PD IT + +L AC     
Sbjct: 190 ERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFA 249

Query: 535 VKEGRRYFETMHGPYGIPPG--EDHYA--RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590
           ++ G++    +HG + +  G  +D +     + +  +  K +EA  V + +  K     W
Sbjct: 250 LQHGKQ----VHG-FSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIK-KKDVVSW 303

Query: 591 EALLAGCRIHGNIDLGIQAAEQLFQLM 617
            A++ G    G+ D    +A  LF++M
Sbjct: 304 NAMVTGYSQIGSFD----SALSLFKMM 326


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 248/646 (38%), Positives = 382/646 (59%), Gaps = 68/646 (10%)

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           ++PD   + ++L     +  + K+   +H  V+ S       + N+L+ +Y +C S    
Sbjct: 70  LEPDRTLYNTLLKRCTQL-GKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGS---- 124

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                +  ARR+FDEMP RD +SWT+M+TGY +ND    A                    
Sbjct: 125 -----LEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFP--------------- 164

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
                  +ML    + +EFT +S++  C     +  G+Q+HA   +         ++ V 
Sbjct: 165 -------RMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHS----NVFVG 213

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
           ++LV +Y +CG + EA  +F+++  ++ VSWNA+++ Y                      
Sbjct: 214 SSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGY---------------------- 251

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
                    A+ G GEE L LF +M+ EG++P ++ ++  ++SC+ +G LE G+ LHA L
Sbjct: 252 ---------ARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHL 302

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
           + S        GN L+ MYA+ G +  A  VF+ +  VD VS N+M+    QHG G  A 
Sbjct: 303 MKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAA 362

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
           + +++M++ GI P+ ITFL+VL+AC+HA L+ EG+ YF  M   Y I P   HYA  +DL
Sbjct: 363 QQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMR-KYNIEPKVSHYATIVDL 421

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624
           L RAG   +AK  I+ +P +P+  IW ALL   ++H N ++G  AA+++F+L P + GT+
Sbjct: 422 LGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTH 481

Query: 625 VLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVY 684
            LL+N+YA+ GRW+D A+VRK+M+D GVKKEP CSW+EV+N VHVF+ +D AHP+ + ++
Sbjct: 482 TLLANIYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIH 541

Query: 685 KYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVL 744
           K  E+L  +++++GYVPDT  VL  ++  +KE  L  HSEKLA++F L+  P G+T+R++
Sbjct: 542 KMWEKLNQKIKEIGYVPDTSHVLLFVDQQEKELNLQYHSEKLALSFALLNTPPGSTIRIM 601

Query: 745 KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KN+R+CGDCH+A K++S VV REI+VRD  RFHHF DG CSCGDYW
Sbjct: 602 KNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFCDGFCSCGDYW 647



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 120/503 (23%), Positives = 213/503 (42%), Gaps = 84/503 (16%)

Query: 9   IRTLANRYASQLQLCDPRNPITSSLARSVHAHMIS----SGFKPREHIINRLIDIYCKSL 64
            R L     S   + D RN +  SL      H++        +P   + N L+   C  L
Sbjct: 29  FRRLWQHSESTFCVIDDRNLLRPSLNSKTGLHVLDLIDCGSLEPDRTLYNTLLK-RCTQL 87

Query: 65  ------KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYN 118
                 KLV+   L       D+V + +L+  Y+   +++ AR +F++ P   RD V + 
Sbjct: 88  GKLKEGKLVHFHVLNSNFKH-DLVIQNSLLFMYARCGSLEGARRLFDEMP--HRDMVSWT 144

Query: 119 AMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC-MQMHCTVV 177
           +MIT Y+ N     A+ LF  M  D  +P+ FT +S++     +      C  Q+H    
Sbjct: 145 SMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMA--SYNCGRQIHACCW 202

Query: 178 KSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK 237
           K G      V ++L+ +Y +C           +G A  VFD++  ++E+SW  ++ GY +
Sbjct: 203 KYGCHSNVFVGSSLVDMYARC---------GYLGEAMLVFDKLGCKNEVSWNALIAGYAR 253

Query: 238 NDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGL 297
               + A      M             GY            +  EFTY++++S+C++ G 
Sbjct: 254 KGEGEEALALFVRMQRE----------GY------------RPTEFTYSALLSSCSSMGC 291

Query: 298 FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA 357
              GK +HA+L+++  K        V N L+ +Y K G + +A  +F+++ + D+VS N+
Sbjct: 292 LEQGKWLHAHLMKSSQKLVGY----VGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNS 347

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
           +L  Y                               AQ+G G+E  + F +M   G +P 
Sbjct: 348 MLIGY-------------------------------AQHGLGKEAAQQFDEMIRFGIEPN 376

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
           D  F   +T+C+    L+ G+     +     +  +S    ++ +  R G+++ A     
Sbjct: 377 DITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIE 436

Query: 478 TMPNVDSVS-WNAMIAALGQHGN 499
            MP   +V+ W A++ A   H N
Sbjct: 437 EMPIEPTVAIWGALLGASKMHKN 459



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
           L   ++S F  + +RNLL  ++           + GL +   +     +P    +   + 
Sbjct: 32  LWQHSESTFCVIDDRNLLRPSL---------NSKTGLHVLDLIDCGSLEPDRTLYNTLLK 82

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
            C  LG L+ G+ +H  +++S +   L   N+L+ MYARCG +E A  +F+ MP+ D VS
Sbjct: 83  RCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVS 142

Query: 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546
           W +MI    Q+   + A+ L+ +ML +G  P+  T  +++  C +      GR+      
Sbjct: 143 WTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQ-IHACC 201

Query: 547 GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
             YG        +  +D+  R G   EA  V D L  K     W AL+AG
Sbjct: 202 WKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVS-WNALIAG 250


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 282/854 (33%), Positives = 426/854 (49%), Gaps = 159/854 (18%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y S LQLC  R  I     R V + + SSG      +  +L+ +Y K   L   R +FD+
Sbjct: 153 YCSILQLCAERKSIRD--GRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDK 210

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           + +  I                                   +N MI+ YS + N   +I 
Sbjct: 211 LSESKIF---------------------------------LWNLMISEYSGSGNYGESIN 237

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LF+ M    +KP+++TF+S+L   A +   E +  Q+H  + K G   + +V+N+LIS Y
Sbjct: 238 LFKQMLELGIKPNSYTFSSILKCFAAVARVE-EGRQVHGLICKLGFNSYNTVVNSLISFY 296

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
                  FV  +  +  A+++FDE+ +RD                               
Sbjct: 297 -------FVGRK--VRCAQKLFDELTDRDV------------------------------ 317

Query: 256 GVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
            ++WN++ISGYV   L         KML+  + +D  T  +V  ACAN G   LGK +H+
Sbjct: 318 -ISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHS 376

Query: 307 YLLRTEAKPTPEFSLPVNNAL-------------------------------VTLYWKCG 335
           Y ++     T +  +  NN L                               +T Y + G
Sbjct: 377 YSIKA---ATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREG 433

Query: 336 KVNEARDIFNQMPERDLVS---------------------------------------WN 356
             + A  +F++M  R +V                                         N
Sbjct: 434 LSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSN 493

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
           A+   Y   G + +A  +F  M++++++SW  MI G  +N    E L LF++M+ E  KP
Sbjct: 494 ALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KP 552

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
                A  + +CA L AL+ GR++H   + +GY       NA++ MY +CG++  A  +F
Sbjct: 553 DGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLF 612

Query: 477 NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536
           + +PN D VSW  MIA  G HG G+ AI  + QM   GI PD ++F+++L AC+H+GL+ 
Sbjct: 613 DMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLD 672

Query: 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           EG + F  M     I P  +HYA  +DLL R G   +A   I ++P KP A IW ALL G
Sbjct: 673 EGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCG 732

Query: 597 CRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEP 656
           CRIH ++ L  + AE++F+L P + G YVLL+N+YA   +W++  ++RK +  RG+KK P
Sbjct: 733 CRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNP 792

Query: 657 GCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKE 716
           GCSWIE+  K+++F+  D + P+A+ +   L++L  +M++ GY P T + L + +  +KE
Sbjct: 793 GCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRLRSKMKEEGYSPKTAYALLNADEREKE 852

Query: 717 YALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRF 776
            AL  HSEKLA+AFG++ LP G T+RV KNLR+CGDCH   KFMSK   REI++RD  RF
Sbjct: 853 VALCGHSEKLAMAFGMLNLPPGKTIRVTKNLRVCGDCHEMAKFMSKSASREIILRDSSRF 912

Query: 777 HHFRDGKCSCGDYW 790
           HHF+DG CSC  YW
Sbjct: 913 HHFKDGSCSCRGYW 926



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 21/162 (12%)

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
           A+   +  CA   ++ +GR++ + +  SG       G  L+ MY +CG ++    VF+ +
Sbjct: 152 AYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKL 211

Query: 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
                  WN MI+     GN   +I L++QML+ GI P+  TF ++L        V+EGR
Sbjct: 212 SESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGR 271

Query: 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581
           +    +HG                L+C+ G F+    V++SL
Sbjct: 272 Q----VHG----------------LICKLG-FNSYNTVVNSL 292


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 268/761 (35%), Positives = 408/761 (53%), Gaps = 108/761 (14%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +HA  + SG +  E +   L+D+Y K   +  A  +F +I  PD+VA          
Sbjct: 70  GKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVA---------- 119

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                                  ++AMIT      +G  A ELF  MRR   +P+ FT +
Sbjct: 120 -----------------------WSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLS 156

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK--CVSSPFVSSRSLMG 211
           S++S  A  + + +    +H  + K G      V N LI +Y+K  CV            
Sbjct: 157 SLVST-ATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVED---------- 205

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG--VAWNALISGYVHR 269
              +VF+ M   D +SW  +++G            F D  +   G  + +  L+ G+   
Sbjct: 206 -GNKVFEAMTNPDLVSWNALLSG------------FYDSQTCGRGPRIFYQMLLEGF--- 249

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
                    + + FT+ SV+ +C++      GKQVHA++++  +    +F   V  ALV 
Sbjct: 250 ---------KPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDD-DDF---VGTALVD 296

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           +Y K   + +A   F+++  RD+ SW  I+S Y                           
Sbjct: 297 MYAKARCLEDAGVAFDRLVNRDIFSWTVIISGY--------------------------- 329

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
               AQ    E+ +K F QM+ EG KP +Y  A  ++ C+ +  LENGRQLHA  V +G+
Sbjct: 330 ----AQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGH 385

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
              +  G+AL+ +Y +CG +E A  +F  + + D VSWN +I+   QHG G +A+E +  
Sbjct: 386 FGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRM 445

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
           ML EGI+PD  TF+ VLSAC+  GLV+EG++ F++M   YGI P  +HYA  +D+L RAG
Sbjct: 446 MLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAG 505

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629
           KF+E K  I+ +   P + IWE +L  C++HGN+D G +AA++LF++ P    +Y+LLSN
Sbjct: 506 KFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSN 565

Query: 630 MYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQ 689
           ++A+ GRWDD   +R LM  RG+KKEPGCSW+EVD +VHVFL  D +HP+ + +Y  L++
Sbjct: 566 IFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLDK 625

Query: 690 LVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRI 749
           L   +  +GYVP T+ VLH++ + +K   L  HSE+LA++F L+       +R+ KNLRI
Sbjct: 626 LGQSLMSIGYVPKTEVVLHNVSNKEKMEHLYYHSERLALSFALLSTNAVKPIRIFKNLRI 685

Query: 750 CGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           C DCH+  K +S +  +EIVVRD +RFHHF+ G CSC D W
Sbjct: 686 CEDCHDFMKLISDITNQEIVVRDIRRFHHFKRGTCSCQDRW 726



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 130/540 (24%), Positives = 228/540 (42%), Gaps = 85/540 (15%)

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
           ++LA  +F   P K  + V +NA++  Y+   +G   ++LF  M+  + K   FT ++VL
Sbjct: 1   MELAERLFFGMPEK--NGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVL 58

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
              A      ++   +H   ++SG  +   +  +L+ +Y KC           +  A +V
Sbjct: 59  KGCA-NTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKC---------GTVYDALKV 108

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLML 276
           F ++   D ++W+ M+TG  +  +   A E    M                         
Sbjct: 109 FTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGA-------------------- 148

Query: 277 RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
             + ++FT +S++S   N G  R G+ +H  +     K   E    V+N L+ +Y K   
Sbjct: 149 --RPNQFTLSSLVSTATNMGDLRYGQSIHGCI----CKYGFESDNLVSNPLIMMYMKSRC 202

Query: 337 VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
           V +   +F  M   DLVSWNA+LS +  +                               
Sbjct: 203 VEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCG--------------------------- 235

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
                G ++F QM LEGFKP  + F   + SC+ L   E G+Q+HA ++ +  D     G
Sbjct: 236 ----RGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVG 291

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
            AL+ MYA+   +E A   F+ + N D  SW  +I+   Q     +A++ + QM +EGI 
Sbjct: 292 TALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIK 351

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY------ARFIDLLCRAGK 570
           P+  T  + LS C+H   ++ GR+        + +     H+      +  +DL  + G 
Sbjct: 352 PNEYTLASCLSGCSHMATLENGRQL-------HAVAVKAGHFGDIFVGSALVDLYGKCGC 404

Query: 571 FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ--LMPHHAGTYVLLS 628
              A+ +   L  +     W  +++G   HG  +  ++A   +    +MP  A    +LS
Sbjct: 405 MEHAEAIFKGLISRDIVS-WNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLS 463



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 142/351 (40%), Gaps = 77/351 (21%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
             + VHAH+I +     + +   L+D+Y K+  L  A   FD +   DI + T +I+ Y+
Sbjct: 271 FGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYA 330

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
            +D  +                                  A++ FR M+R+ +KP+ +T 
Sbjct: 331 QTDQAE---------------------------------KAVKYFRQMQREGIKPNEYTL 357

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            S LS  + +   E    Q+H   VK+G      V +AL+ +Y KC           M  
Sbjct: 358 ASCLSGCSHMATLENG-RQLHAVAVKAGHFGDIFVGSALVDLYGKC---------GCMEH 407

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A  +F  +  RD +SW T+++GY ++           G  E    A+  ++S        
Sbjct: 408 AEAIFKGLISRDIVSWNTIISGYSQH-----------GQGEKALEAFRMMLSE------- 449

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVTLY 331
                I  DE T+  V+SAC+  GL   GK+    + +     P+ E        +V + 
Sbjct: 450 ----GIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYA----CMVDIL 501

Query: 332 WKCGKVNEARDIFNQM--PERDLVSWNAILSAYVSAGLID----EAKSLFE 376
            + GK NE +    +M      L+ W  +L A    G +D     AK LFE
Sbjct: 502 GRAGKFNEVKIFIEEMNLTPYSLI-WETVLGACKLHGNVDFGEKAAKKLFE 551


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 256/715 (35%), Positives = 408/715 (57%), Gaps = 42/715 (5%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           ++     L+  Y +   V+ A+ +F+  P   R+ + +N++ + Y +       + +FR+
Sbjct: 276 NVFVSNALVNLYESCLCVREAQAVFDLMP--HRNVITWNSLASCYVNCGFPQKGLNVFRE 333

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M  + VKPD    +S+L A + + ++ K    +H   VK G      V  AL+++Y  C+
Sbjct: 334 MGLNGVKPDPMAMSSILPACSQL-KDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCL 392

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                     +  A+ VFD MP R+ ++W ++ + YV                 N G   
Sbjct: 393 C---------VREAQTVFDLMPHRNVVTWNSLSSCYV-----------------NCGFPQ 426

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
             L    V RE  M++  ++ D  T  S++ AC++    + GK +H + +R         
Sbjct: 427 KGL---NVFRE--MVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVE---- 477

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
            + V NAL++LY KC  V EA+ +F+ +P R++ SWN IL+AY +    ++   +F  M 
Sbjct: 478 DVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMN 537

Query: 380 ERNL----LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
              +    ++W+V+I G  +N   EE +++F +M+  GFKP +      + +C+    L 
Sbjct: 538 RDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLR 597

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            G+++H  +     D  L+  NAL+ MYA+CG +  +  VF+ MP  D  SWN MI A G
Sbjct: 598 MGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANG 657

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
            HGNG  A+ L+E+ML   + PD  TF  VLSAC+H+ LV+EG + F +M   + + P  
Sbjct: 658 MHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEA 717

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
           +HY   +D+  RAG   EA   I  +P +P+A  W+A LAGCR++ N++L   +A++LF+
Sbjct: 718 EHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFE 777

Query: 616 LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
           + P+ +  YV L N+      W +A+++RKLM++RG+ K PGCSW  V N+VH F+  D 
Sbjct: 778 IDPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSWFHVGNRVHTFVAGDK 837

Query: 676 AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKL 735
           ++ E+  +Y +L++L  +++  GY PDT +VLHD++ ++K  +L  HSEKLAVAFG++ L
Sbjct: 838 SNMESDKIYNFLDELFAKIKAAGYKPDTDYVLHDIDQEEKAESLCNHSEKLAVAFGILNL 897

Query: 736 PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            G +T+RV KNLRICGDCHNA K+MS VVG  IVVRD  RFHHF++G CSC D+W
Sbjct: 898 NGQSTIRVFKNLRICGDCHNAIKYMSNVVGVTIVVRDSLRFHHFKNGNCSCKDFW 952



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 138/538 (25%), Positives = 246/538 (45%), Gaps = 79/538 (14%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+      I AY     V+ AR +F+   L  RD V +N++   Y +       + +FR 
Sbjct: 74  DVSIGNAFIHAYGKCKCVEGARRVFDD--LVARDVVTWNSLSACYVNCGFPQQGLNVFRK 131

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M  + VK +  T +S+L   + + ++ K   ++H  VV+ G      V +A ++ Y KC+
Sbjct: 132 MGLNKVKANPLTVSSILPGCSDL-QDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCL 190

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                     +  A+ VFD MP RD ++W ++ + YV                 N G   
Sbjct: 191 C---------VREAQTVFDLMPHRDVVTWNSLSSCYV-----------------NCGFPQ 224

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
             L    V RE  M++  ++ D  T + ++SAC++    + GK +H + L+         
Sbjct: 225 KGL---NVFRE--MVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVE---- 275

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
           ++ V+NALV LY  C  V EA+ +F+ MP R++++WN++ S YV+               
Sbjct: 276 NVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNC-------------- 321

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
                            G+ ++GL +F +M L G KP   A +  + +C+ L  L++G+ 
Sbjct: 322 -----------------GFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKT 364

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           +H   V  G    +    AL+ +YA C  V  A  VF+ MP+ + V+WN++ +     G 
Sbjct: 365 IHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGF 424

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG--EDH 557
             + + ++ +M+  G+ PD +T L++L AC+    +K G+     +HG + +  G  ED 
Sbjct: 425 PQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGK----VIHG-FAVRHGMVEDV 479

Query: 558 YA--RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
           +     + L  +     EA+ V D +P +  A  W  +L     +   + G+    Q+
Sbjct: 480 FVCNALLSLYAKCVCVREAQVVFDLIPHREVAS-WNGILTAYFTNKEYEKGLYMFSQM 536



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 133/524 (25%), Positives = 229/524 (43%), Gaps = 105/524 (20%)

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           AI+++   R   +KPD   F +V  A A    +  +  Q H    + G     S+ NA I
Sbjct: 24  AIKIYTSSRARGIKPDKPVFMAVAKACA-ASRDALKVKQFHDDATRCGVMSDVSIGNAFI 82

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
             Y KC           +  ARRVFD++  RD ++W ++   YV                
Sbjct: 83  HAYGKC---------KCVEGARRVFDDLVARDVVTWNSLSACYV---------------- 117

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
            N G     L    V R  KM + +++ +  T +S++  C++    + GK++H +++R  
Sbjct: 118 -NCGFPQQGL---NVFR--KMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHG 171

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
                   + V++A V  Y KC  V EA+ +F+ MP RD+V+WN++ S YV+        
Sbjct: 172 MVE----DVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNC------- 220

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
                                   G+ ++GL +F +M L+G KP     +  +++C+ L 
Sbjct: 221 ------------------------GFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQ 256

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
            L++G+ +H   +  G   ++   NAL+ +Y  C  V  A  VF+ MP+ + ++WN++ +
Sbjct: 257 DLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLAS 316

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552
                G   + + ++ +M   G+ PD +   ++L AC+    +K G+    T+HG     
Sbjct: 317 CYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGK----TIHG----- 367

Query: 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
                          A K    +DV     F  +A +   L A C       L ++ A+ 
Sbjct: 368 --------------FAVKHGMVEDV-----FVCTALV--NLYANC-------LCVREAQT 399

Query: 613 LFQLMPH-HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKE 655
           +F LMPH +  T+  LS+ Y N G       V + M   GVK +
Sbjct: 400 VFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPD 443



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/481 (23%), Positives = 199/481 (41%), Gaps = 93/481 (19%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            +++H   +  G      +   L+++Y   L +  A+T+FD +P                
Sbjct: 362 GKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPH--------------- 406

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                             R+ V +N++ + Y +       + +FR+M  + VKPD  T  
Sbjct: 407 ------------------RNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTML 448

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           S+L A + + ++ K    +H   V+ G      V NAL+S+Y KCV          +  A
Sbjct: 449 SILHACSDL-QDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVC---------VREA 498

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV----GVAWNALISGYVHR 269
           + VFD +P R+  SW  ++T Y  N   +        M+ +      + W+ +I G V  
Sbjct: 499 QVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKN 558

Query: 270 E---------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
                      KM  +  + DE T  S++ AC+ S   R+GK++H Y+ R       ++ 
Sbjct: 559 SRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRH----WKDWD 614

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           L   NALV +Y KCG ++ +R++F+ MP +D+ SWN ++ A                   
Sbjct: 615 LARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFAN------------------ 656

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
                          +G G+E L LF +M L   KP    F   +++C+    +E G Q+
Sbjct: 657 -------------GMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQI 703

Query: 441 HAQLVHSG-YDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHG 498
              +      +        ++ +Y+R G +E A      MP    +++W A +A    + 
Sbjct: 704 FNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYK 763

Query: 499 N 499
           N
Sbjct: 764 N 764



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 159/393 (40%), Gaps = 97/393 (24%)

Query: 36  SVHAHMISSGFKPRE-------HIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLI 88
           +V   M+ +G KP         H  + L D+  KS K+++   +   + + D+     L+
Sbjct: 430 NVFREMVLNGVKPDLVTMLSILHACSDLQDL--KSGKVIHGFAVRHGMVE-DVFVCNALL 486

Query: 89  AAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV--- 145
           + Y+    V+ A+ +F+  P   R+   +N ++TAY  N      + +F  M RD+V   
Sbjct: 487 SLYAKCVCVREAQVVFDLIP--HREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKAD 544

Query: 146 --------------------------------KPDNFTFTSVLSALALIVEEEKQCMQM- 172
                                           KPD  T  S+L A +L      +C++M 
Sbjct: 545 EITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSL-----SECLRMG 599

Query: 173 ---HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWT 229
              HC V +       +  NAL+ +Y KC           +  +R VFD MP +D  SW 
Sbjct: 600 KEIHCYVFRHWKDWDLARTNALVDMYAKCGG---------LSLSRNVFDMMPIKDVFSWN 650

Query: 230 TMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVI 289
           TM+              F +GM  N   A +           KML+  ++ D  T+T V+
Sbjct: 651 TMI--------------FANGMHGNGKEALSLF--------EKMLLSMVKPDSATFTCVL 688

Query: 290 SACANSGLFRLGKQVHAYLLRTE-AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
           SAC++S L   G Q+   + R    +P  E        +V +Y + G + EA     +MP
Sbjct: 689 SACSHSMLVEEGVQIFNSMSRDHLVEPEAEHY----TCVVDIYSRAGCLEEAYGFIQRMP 744

Query: 349 -ERDLVSWNAILSA---YVSAGLID-EAKSLFE 376
            E   ++W A L+    Y +  L    AK LFE
Sbjct: 745 MEPTAIAWKAFLAGCRVYKNVELAKISAKKLFE 777



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 105/262 (40%), Gaps = 38/262 (14%)

Query: 396 NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSA 455
           +G   E +K+++  R  G KP    F     +CA        +Q H      G  S +S 
Sbjct: 18  HGLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSI 77

Query: 456 GNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI 515
           GNA I  Y +C  VE A  VF+ +   D V+WN++ A     G   + + ++ +M    +
Sbjct: 78  GNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKV 137

Query: 516 LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAK 575
             + +T  ++L  C+    +K G+     +HG                 + R G     +
Sbjct: 138 KANPLTVSSILPGCSDLQDLKSGKE----IHG----------------FVVRHGM---VE 174

Query: 576 DVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH-AGTYVLLSNMYANL 634
           DV  S  F           A C       L ++ A+ +F LMPH    T+  LS+ Y N 
Sbjct: 175 DVFVSSAF-------VNFYAKC-------LCVREAQTVFDLMPHRDVVTWNSLSSCYVNC 220

Query: 635 GRWDDAARVRKLMRDRGVKKEP 656
           G       V + M   GVK +P
Sbjct: 221 GFPQKGLNVFREMVLDGVKPDP 242


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 274/776 (35%), Positives = 407/776 (52%), Gaps = 104/776 (13%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           + S L+LC  R  + +   R+VHA + + G          L ++Y K  +   AR +FD 
Sbjct: 62  FTSLLKLCAARGDLAT--GRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDR 119

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P                                 +RD V +NA++  Y+ N     A+E
Sbjct: 120 MP---------------------------------VRDRVAWNALVAGYARNGLARMAME 146

Query: 136 LFRDMRRDD-VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
           +   M+ ++  +PD+ T  SVL A A          + H   ++SG     +V  A++  
Sbjct: 147 MVVRMQEEEGERPDSITLVSVLPACANARALAAC-REAHAFAIRSGLEELVNVATAILDA 205

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           Y KC           + AAR VFD MP ++ +SW  M+ GY +N     +RE L      
Sbjct: 206 YCKCGD---------IRAARVVFDWMPTKNSVSWNAMIDGYAQN---GDSREAL------ 247

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
                 AL +       +M+   + + + +  + + AC   G    G +VH  L+R    
Sbjct: 248 ------ALFN-------RMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRI--- 291

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
              + ++ V NAL+T+Y KC +V+ A  +F+++  R  VSWNA                 
Sbjct: 292 -GLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNA----------------- 333

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
                         MI G AQNG  E+ ++LF++M+LE  KP  +     I + A +   
Sbjct: 334 --------------MILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDP 379

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
              R +H   +    D  +    ALI MYA+CG V  A  +FN+      ++WNAMI   
Sbjct: 380 LQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGY 439

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
           G HG G  A+EL+E+M   GI+P+  TFL+VLSAC+HAGLV EGR YF +M   YG+ PG
Sbjct: 440 GSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPG 499

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
            +HY   +DLL RAGK  EA   I  +P  P   ++ A+L  C++H N++L  ++A+++F
Sbjct: 500 MEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIF 559

Query: 615 QLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDD 674
           +L P     +VLL+N+YAN   W D ARVR  M   G++K PG S I++ N++H F    
Sbjct: 560 ELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGS 619

Query: 675 TAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMK 734
           T H +A+ +Y  L +L+ E++ +GYVPDT  + HD+E D K   L+THSEKLA+AFGL++
Sbjct: 620 TNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAFGLIR 678

Query: 735 LPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
              G T+++ KNLR+C DCHNA K +S V GREI++RD +RFHHF+DGKCSCGDYW
Sbjct: 679 TAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 144/490 (29%), Positives = 214/490 (43%), Gaps = 80/490 (16%)

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
           AA+  F  M      P   TFTS+L  L     +      +H  +   G         AL
Sbjct: 42  AALAAFVAMSSAGAPPVLRTFTSLLK-LCAARGDLATGRAVHAQLAARGIDSEALAATAL 100

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
            ++Y KC   P          ARRVFD MP RD ++W  ++ GY +N     A E +  M
Sbjct: 101 ANMYAKC-RRP--------ADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRM 151

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
            E  G                      + D  T  SV+ ACAN+      ++ HA+ +R+
Sbjct: 152 QEEEGE---------------------RPDSITLVSVLPACANARALAACREAHAFAIRS 190

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
                 E  + V  A++  Y KCG +  AR +F+ MP ++ VSWNA++  Y         
Sbjct: 191 ----GLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGY--------- 237

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
                                 AQNG   E L LF++M  EG    D +   A+ +C  L
Sbjct: 238 ----------------------AQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGEL 275

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
           G L+ G ++H  LV  G DS++S  NALITMY++C  V+ A+ VF+ +     VSWNAMI
Sbjct: 276 GCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMI 335

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
               Q+G    A+ L+ +M  E + PD  T ++V+ A        + R     +HG Y I
Sbjct: 336 LGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQAR----WIHG-YSI 390

Query: 552 PPGEDH----YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
               D         ID+  + G+ + A+ + +S   +     W A++ G   HG    G 
Sbjct: 391 RLHLDQDVYVLTALIDMYAKCGRVNIARILFNS-ARERHVITWNAMIHGYGSHG---FG- 445

Query: 608 QAAEQLFQLM 617
           +AA +LF+ M
Sbjct: 446 KAAVELFEEM 455



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 113/256 (44%), Gaps = 20/256 (7%)

Query: 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALIT 461
            L  F  M   G  P    F   +  CA  G L  GR +HAQL   G DS   A  AL  
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML-KEGILPDRI 520
           MYA+C     A  VF+ MP  D V+WNA++A   ++G    A+E+  +M  +EG  PD I
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR----FIDLLCRAGKFSEAKD 576
           T ++VL AC +A  +   R         + I  G +         +D  C+ G    A+ 
Sbjct: 163 TLVSVLPACANARALAACREAH-----AFAIRSGLEELVNVATAILDAYCKCGDIRAARV 217

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA---- 632
           V D +P K S   W A++ G   +G+     + A  LF  M         +S + A    
Sbjct: 218 VFDWMPTKNSVS-WNAMIDGYAQNGD----SREALALFNRMVEEGVDVTDVSVLAALQAC 272

Query: 633 -NLGRWDDAARVRKLM 647
             LG  D+  RV +L+
Sbjct: 273 GELGCLDEGMRVHELL 288


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 278/778 (35%), Positives = 431/778 (55%), Gaps = 95/778 (12%)

Query: 36  SVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASD 95
           SVHA + +SGF+    + N L+ +Y +      AR +FDE+ +  +              
Sbjct: 166 SVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGV-------------- 211

Query: 96  NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPDNFTFTS 154
                            D V +N+++ AY    +   A+++F  M  D  ++PD  +  +
Sbjct: 212 ----------------GDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVN 255

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL--NALISVYVKCVSSPFVSSRSLMGA 212
           VL A A  V    +  Q+H   ++SG  LF  V   NA++ +Y KC          +M  
Sbjct: 256 VLPACA-SVGAWSRGKQVHGYALRSG--LFEDVFVGNAVVDMYAKC---------GMMEE 303

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE-----NVGVAWNALISGYV 267
           A +VF+ M  +D +SW  M+TGY +    D A    + + E     NV V W+A+I+GY 
Sbjct: 304 ANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNV-VTWSAVIAGYA 362

Query: 268 HREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR---TEAKP 315
            R L         +ML+   + +  T  S++S CA++G    GK+ H + ++      + 
Sbjct: 363 QRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDEN 422

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
            P   L V NAL+ +Y KC     AR +F+ +P +D                        
Sbjct: 423 DPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKD------------------------ 458

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RLEGF-KPCDYAFAGAITSCAGLGA 433
                R++++WTV+I G AQ+G   E L+LFSQM + + F  P  +  + A+ +CA LGA
Sbjct: 459 -----RSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGA 513

Query: 434 LENGRQLHAQLVHSGYDSS-LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
           L  GRQ+HA ++ + ++S+ L   N LI MY++ G V+AA  VF+ M   + VSW +++ 
Sbjct: 514 LRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMT 573

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552
             G HG G  A++++ +M K  ++PD +TF+ VL AC+H+G+V +G  YF  M+  +G+ 
Sbjct: 574 GYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVV 633

Query: 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
           PG +HYA  +DLL RAG+  EA ++I  +P KP+  +W ALL+ CR++ N++LG  AA Q
Sbjct: 634 PGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQ 693

Query: 613 LFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLV 672
           L +L   + G+Y LLSN+YAN   W D AR+R LM++ G+KK PGCSW++       F  
Sbjct: 694 LLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFA 753

Query: 673 DDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGL 732
            D +HP +Q +Y  L  L+  ++ LGYVPD +F LHD++ ++K   LS HSEKLA+A+G+
Sbjct: 754 GDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGI 813

Query: 733 MKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +    GA +R+ KNLR CGDCH+AF ++S ++  EI+VRD  RFHHF++G CSC  YW
Sbjct: 814 LTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 871



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 168/578 (29%), Positives = 273/578 (47%), Gaps = 79/578 (13%)

Query: 61  CKSL---KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFY 117
           CKSL   +L + + L   +P       T +I+ Y   ++   A  +  +         ++
Sbjct: 58  CKSLASAELTHQQLLVQGLPHDP----THIISMYLTFNSPAKALSVLRRLHPSSHTVFWW 113

Query: 118 NAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC-MQMHCTV 176
           N +I    H       ++L+R M+R   +PD++TF  VL A   I     +C   +H  V
Sbjct: 114 NQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEI--PSFRCGASVHAVV 171

Query: 177 VKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA---ARRVFDEMPER---DELSWTT 230
             SG      V N L+S+Y +C            GA   AR+VFDEM ER   D +SW +
Sbjct: 172 FASGFEWNVFVGNGLVSMYGRC------------GAWENARQVFDEMRERGVGDLVSWNS 219

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++  Y++      A +  + M+E++G                     I+ D  +  +V+ 
Sbjct: 220 IVAAYMQGGDSIRAMKMFERMTEDLG---------------------IRPDAVSLVNVLP 258

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           ACA+ G +  GKQVH Y LR+         + V NA+V +Y KCG + EA  +F +M  +
Sbjct: 259 ACASVGAWSRGKQVHGYALRSGLFE----DVFVGNAVVDMYAKCGMMEEANKVFERMKVK 314

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRER----NLLSWTVMISGLAQNGYGEEGLKLF 406
           D+VSWNA+++ Y   G  D+A  LFE +RE     N+++W+ +I+G AQ G G E L +F
Sbjct: 315 DVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVF 374

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV-------HSGYDSSLSAGNAL 459
            QM L G +P        ++ CA  G L +G++ H   +        +     L   NAL
Sbjct: 375 RQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINAL 434

Query: 460 ITMYARCGVVEAANCVFNTMPNVDS--VSWNAMIAALGQHGNGARAIELYEQMLKEG--I 515
           I MY++C   +AA  +F+ +P  D   V+W  +I    QHG    A+EL+ QML+    +
Sbjct: 435 IDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFV 494

Query: 516 LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF-----IDLLCRAGK 570
           +P+  T    L AC   G ++ GR+    +H  Y +    +    F     ID+  ++G 
Sbjct: 495 MPNAFTISCALMACARLGALRFGRQ----IHA-YVLRNRFESAMLFVANCLIDMYSKSGD 549

Query: 571 FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
              A+ V D++  + +   W +L+ G  +HG  +  +Q
Sbjct: 550 VDAARVVFDNM-HQRNGVSWTSLMTGYGMHGRGEEALQ 586



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 107/424 (25%), Positives = 195/424 (45%), Gaps = 47/424 (11%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           S  + VH + + SG      + N ++D+Y K   +  A  +F+ +   D+V+   ++  Y
Sbjct: 267 SRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGY 326

Query: 92  SASDNVKLAREMFNKTPLKM--RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
           S       A  +F K   +    + V ++A+I  Y+    G  A+++FR M     +P+ 
Sbjct: 327 SQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNV 386

Query: 150 FTFTSVLSALA----LIVEEEKQC--MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
            T  S+LS  A    L+  +E  C  ++    + ++  G    V+NALI +Y KC S   
Sbjct: 387 VTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPK- 445

Query: 204 VSSRSLMGAARRVFDEMPERDE--LSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNA 261
                   AAR +FD +P +D   ++WT ++ G  ++   + A E    M +        
Sbjct: 446 --------AARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNF---- 493

Query: 262 LISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
                           +  + FT +  + ACA  G  R G+Q+HAY+LR   +    F  
Sbjct: 494 ----------------VMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLF-- 535

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
            V N L+ +Y K G V+ AR +F+ M +R+ VSW ++++ Y   G  +EA  +F  M++ 
Sbjct: 536 -VANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKV 594

Query: 382 NL----LSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSCAGLGALEN 436
            L    +++ V++   + +G  ++G+  F+ M  + G  P    +A  +   +  G L+ 
Sbjct: 595 XLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDE 654

Query: 437 GRQL 440
             +L
Sbjct: 655 AMEL 658



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 145/296 (48%), Gaps = 17/296 (5%)

Query: 329 TLYWKCGKVNEARDIFNQMPERDLV-SWNAILSAYVSAGLIDEAKSLFEAMR--ERNLLS 385
           TL+ +C  +  A     Q+  + L      I+S Y++     +A S+   +      +  
Sbjct: 53  TLFHQCKSLASAELTHQQLLVQGLPHDPTHIISMYLTFNSPAKALSVLRRLHPSSHTVFW 112

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
           W  +I      G+ E+ L+L+ +M+  G++P  Y F   + +C  + +   G  +HA + 
Sbjct: 113 WNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVF 172

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV---DSVSWNAMIAALGQHGNGAR 502
            SG++ ++  GN L++MY RCG  E A  VF+ M      D VSWN+++AA  Q G+  R
Sbjct: 173 ASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIR 232

Query: 503 AIELYEQMLKE-GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG--EDHYA 559
           A++++E+M ++ GI PD ++ + VL AC   G    G++    +HG Y +  G  ED + 
Sbjct: 233 AMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQ----VHG-YALRSGLFEDVFV 287

Query: 560 --RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
               +D+  + G   EA  V + +  K     W A++ G    G  D  +   E++
Sbjct: 288 GNAVVDMYAKCGMMEEANKVFERMKVKDVVS-WNAMVTGYSQIGRFDDALGLFEKI 342


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 245/622 (39%), Positives = 360/622 (57%), Gaps = 36/622 (5%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           ++H  ++K+G    + + N L+ VY KC          L+  A ++FDEMP RD +SW +
Sbjct: 24  ELHSQIIKAGFDKSSLLSNTLLDVYGKC---------GLIPQALQLFDEMPNRDHVSWAS 74

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++T + K          L+ M  + G                     +Q D F +  ++ 
Sbjct: 75  ILTAHNKALIPRRTLSMLNTMFTHDG---------------------LQPDHFVFACIVR 113

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           AC++ G  RLGKQVHA  + +           V ++L+ +Y KCG+ +EAR +F+ +  +
Sbjct: 114 ACSSLGYLRLGKQVHARFMLSXFCDDE----VVKSSLIDMYTKCGQPDEARAVFDSILFK 169

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           + VSW +++S Y  +G   EA  LF     RNL SWT +ISGL Q+G+G     LF++MR
Sbjct: 170 NSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMR 229

Query: 411 LEGFKPCD-YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
            EG    D    +  +  CA L  LE G+Q+H  ++  G++S L   NAL+ MYA+C  +
Sbjct: 230 REGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDI 289

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
            AA  +F  MP  D +SW ++I    QHG    A+ LY++M+   I P+ +TF+ +L AC
Sbjct: 290 LAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYAC 349

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
           +HAGLV  GR  F +M   Y I P   HY   +DLL R+G   EA++++D +PFKP  P 
Sbjct: 350 SHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPT 409

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
           W +LL+ C  H N+++G++ A+++  L P    TY+LLSN+YA    W   ++VRKLM  
Sbjct: 410 WASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSS 469

Query: 650 RGVKKEPGCSWIEVDNKVHVFLVDDTA-HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLH 708
             V+KEPG S I+      VF   ++  HP    +   L+ L  EMRK GYVP+T FVL+
Sbjct: 470 MEVRKEPGYSSIDFGKDSQVFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLY 529

Query: 709 DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREI 768
           D+E  +KE  L  HSE+LAVA+GL+K   G  +R++KNLRICGDCHN  KF+S +V REI
Sbjct: 530 DIEQQEKEKQLFWHSERLAVAYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREI 589

Query: 769 VVRDGKRFHHFRDGKCSCGDYW 790
           +VRD  R+HHF++GKCSC D+W
Sbjct: 590 MVRDATRYHHFKEGKCSCNDFW 611



 Score =  169 bits (427), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 135/512 (26%), Positives = 229/512 (44%), Gaps = 95/512 (18%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF 73
           + +  QLQLC  R   ++S A  +H+ +I +GF     + N L+D+Y K   +  A  LF
Sbjct: 4   SHFLHQLQLCARRQ--SASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLF 61

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
           DE+P  D V+  +++ A+             NK  +  R     N M T           
Sbjct: 62  DEMPNRDHVSWASILTAH-------------NKALIPRRTLSMLNTMFT----------- 97

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
                    D ++PD+F F  ++ A + +    +   Q+H   + S       V ++LI 
Sbjct: 98  --------HDGLQPDHFVFACIVRACSSL-GYLRLGKQVHARFMLSXFCDDEVVKSSLID 148

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND-YLDAAREFLDGMS 252
           +Y KC   P          AR VFD +  ++ +SWT+M++GY ++    +A   FL    
Sbjct: 149 MYTKC-GQP--------DEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPV 199

Query: 253 ENVGVAWNALISGYVH-----------RELKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
            N+  +W ALISG +             E++   + I +D    +SV+  CAN  L  LG
Sbjct: 200 RNL-FSWTALISGLIQSGHGIYSFSLFNEMRREGIDI-VDPLVLSSVVGGCANLALLELG 257

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
           KQ+H  ++        E  L ++NALV +Y KC  +  A+DIF +MP +D++SW +I   
Sbjct: 258 KQIHGLVIALGF----ESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSI--- 310

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
                                       I G AQ+G  EE L L+ +M L   KP +  F
Sbjct: 311 ----------------------------IVGTAQHGKAEEALTLYDEMVLSRIKPNEVTF 342

Query: 422 AGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
            G + +C+  G +  GR+L   +      + SL     L+ + +R G ++ A  + + +P
Sbjct: 343 VGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIP 402

Query: 481 -NVDSVSWNAMIAALGQHGNGARAIELYEQML 511
              D  +W ++++A  +H N    + + +++L
Sbjct: 403 FKPDEPTWASLLSACMRHNNLEMGVRIADRVL 434



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 99/197 (50%), Gaps = 13/197 (6%)

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
           F   +  CA   +     +LH+Q++ +G+D S    N L+ +Y +CG++  A  +F+ MP
Sbjct: 6   FLHQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMP 65

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLK-EGILPDRITFLTVLSACNHAGLVKEGR 539
           N D VSW +++ A  +     R + +   M   +G+ PD   F  ++ AC+  G ++ G+
Sbjct: 66  NRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGK 125

Query: 540 RYFETMHGPYGIPPGEDH---YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           +    +H  + +    D     +  ID+  + G+  EA+ V DS+ FK S   W ++++G
Sbjct: 126 Q----VHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVS-WTSMISG 180

Query: 597 CRIHGN----IDLGIQA 609
               G     +DL +QA
Sbjct: 181 YARSGRKCEAMDLFLQA 197


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  487 bits (1254), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 258/754 (34%), Positives = 406/754 (53%), Gaps = 100/754 (13%)

Query: 37   VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
            VH+  I  G +  E I   L+D+Y K      A  +F  I  PD+V+             
Sbjct: 352  VHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVS------------- 398

Query: 97   VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
                                ++A+IT          A E+F+ MR   V P+ FT  S++
Sbjct: 399  --------------------WSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLV 438

Query: 157  SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
            SA A  + +      +H  V K G     +V NAL+++Y+K  S         +    RV
Sbjct: 439  SA-ATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGS---------VQDGCRV 488

Query: 217  FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLML 276
            F+    RD +SW  +++G+  N+  D      +                      +ML  
Sbjct: 489  FEATTNRDLISWNALLSGFHDNETCDTGLRIFN----------------------QMLAE 526

Query: 277  RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
                + +T+ S++ +C++     LGKQVHA +++                          
Sbjct: 527  GFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVK-------------------------- 560

Query: 337  VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
                    N +   D V   A++  Y     +++A+++F  + +R+L +WTV+++G AQ+
Sbjct: 561  --------NSLDGNDFVG-TALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQD 611

Query: 397  GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
            G GE+ +K F QM+ EG KP ++  A +++ C+ +  L++GRQLH+  + +G    +   
Sbjct: 612  GQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVA 671

Query: 457  NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
            +AL+ MYA+CG VE A  VF+ + + D+VSWN +I    QHG G +A++ +E ML EG +
Sbjct: 672  SALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTV 731

Query: 517  PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
            PD +TF+ VLSAC+H GL++EG+++F ++   YGI P  +HYA  +D+L RAGKF E + 
Sbjct: 732  PDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVES 791

Query: 577  VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636
             I+ +    +  IWE +L  C++HGNI+ G +AA +LF+L P     Y+LLSNM+A  G 
Sbjct: 792  FIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGM 851

Query: 637  WDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRK 696
            WDD   VR LM  RGVKKEPGCSW+EV+ +VHVFL  D +HP+ + ++  L+ L  ++  
Sbjct: 852  WDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMS 911

Query: 697  LGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNA 756
            +GY P+T  VLH++   +K+  L  HSE+LA+AF L+      T+R+ KNLRICGDCH+ 
Sbjct: 912  VGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDF 971

Query: 757  FKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             K +S++  +E+VVRD   FHHF++G CSC ++W
Sbjct: 972  MKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 1005



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 165/670 (24%), Positives = 282/670 (42%), Gaps = 143/670 (21%)

Query: 15  RYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFD 74
           +Y+  L+ C  +  +     +++H  +I SG  P  H+ N L+++Y K     YA  +F 
Sbjct: 130 QYSGMLRTCASKGDLNE--GKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFG 187

Query: 75  EIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAI 134
           EIP+                                 RD V + A+IT +     G  A+
Sbjct: 188 EIPE---------------------------------RDVVSWTALITGFVAEGYGSGAV 214

Query: 135 ELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
            LF +MRR+ V+ + FT+ + L A ++ ++ E    Q+H   +K G      V +AL+ +
Sbjct: 215 NLFCEMRREGVEANEFTYATALKACSMCLDLEFG-KQVHAEAIKVGDFSDLFVGSALVDL 273

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           Y KC           M  A RVF  MP+++ +SW  ++ G+ +            G +E 
Sbjct: 274 YAKC---------GEMVLAERVFLCMPKQNAVSWNALLNGFAQM-----------GDAEK 313

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
           V           ++   +M    I   +FT ++V+  CANSG  R G+ VH+  +R   +
Sbjct: 314 V-----------LNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCE 362

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
              EF   ++  LV +Y KCG   +A  +F ++ + D+VSW+AI++     G   EA  +
Sbjct: 363 -LDEF---ISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEV 418

Query: 375 FEAMRER----NLLSWTVMISGLAQNG---YGE--------------------------- 400
           F+ MR      N  +   ++S     G   YGE                           
Sbjct: 419 FKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMK 478

Query: 401 -----EGLKLFSQMR----------LEGF---KPCD------------------YAFAGA 424
                +G ++F              L GF   + CD                  Y F   
Sbjct: 479 IGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISI 538

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           + SC+ L  ++ G+Q+HAQ+V +  D +   G AL+ MYA+   +E A  +FN +   D 
Sbjct: 539 LRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDL 598

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
            +W  ++A   Q G G +A++ + QM +EG+ P+  T  + LS C+    +  GR+   +
Sbjct: 599 FAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQ-LHS 657

Query: 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
           M    G        +  +D+  + G   +A+ V D L  + +   W  ++ G   HG   
Sbjct: 658 MAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVS-WNTIICGYSQHGQGG 716

Query: 605 LGIQAAEQLF 614
             ++A E + 
Sbjct: 717 KALKAFEAML 726



 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 157/335 (46%), Gaps = 41/335 (12%)

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           Y+ ++  CA+ G    GK +H  ++++   P         N+LV +Y KCG  N A  +F
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLW----NSLVNVYAKCGSANYACKVF 186

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
            ++PERD+VSW A+++ +V+                                GYG   + 
Sbjct: 187 GEIPERDVVSWTALITGFVA-------------------------------EGYGSGAVN 215

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           LF +MR EG +  ++ +A A+ +C+    LE G+Q+HA+ +  G  S L  G+AL+ +YA
Sbjct: 216 LFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYA 275

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           +CG +  A  VF  MP  ++VSWNA++    Q G+  + + L+ +M    I   + T  T
Sbjct: 276 KCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLST 335

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584
           VL  C ++G ++ G +   ++    G    E      +D+  + G   +A  V   +   
Sbjct: 336 VLKGCANSGNLRAG-QIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIE-D 393

Query: 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
           P    W A++      G      + A ++F+ M H
Sbjct: 394 PDVVSWSAIITCLDQKGQ----SREAAEVFKRMRH 424



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 149/366 (40%), Gaps = 75/366 (20%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           + S L+ C   + +   L + VHA ++ +     + +   L+D+Y K+  L  A T+F+ 
Sbjct: 535 FISILRSCSSLSDV--DLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNR 592

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           + + D+ A T ++A                                  Y+ +  G  A++
Sbjct: 593 LIKRDLFAWTVIVA---------------------------------GYAQDGQGEKAVK 619

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
            F  M+R+ VKP+ FT  S LS  + I   +    Q+H   +K+G      V +AL+ +Y
Sbjct: 620 CFIQMQREGVKPNEFTLASSLSGCSRIATLDSG-RQLHSMAIKAGQSGDMFVASALVDMY 678

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            KC           +  A  VFD +  RD +SW T++ GY ++     A +  + M +  
Sbjct: 679 AKC---------GCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEG 729

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
            V                       DE T+  V+SAC++ GL   GK+ H   L      
Sbjct: 730 TVP----------------------DEVTFIGVLSACSHMGLIEEGKK-HFNSLSKIYGI 766

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLID----E 370
           TP  ++     +V +  + GK +E      +M    +++ W  +L A    G I+     
Sbjct: 767 TP--TIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERA 824

Query: 371 AKSLFE 376
           A  LFE
Sbjct: 825 AMKLFE 830


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  487 bits (1254), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 267/771 (34%), Positives = 414/771 (53%), Gaps = 66/771 (8%)

Query: 38  HAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNV 97
           HA ++ SG +   +I  +LI  Y        A  +   IP P I + ++LI A + +   
Sbjct: 38  HARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLF 97

Query: 98  KLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLS 157
             +  +F++        +F + +I   SH                  V P+ F   + LS
Sbjct: 98  TQSIGVFSR--------MFSHGLIPD-SH------------------VLPNLFKVCAELS 130

Query: 158 ALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVF 217
           A        K   Q+HC    SG  +   V  ++  +Y++C           MG AR+VF
Sbjct: 131 AF-------KVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRC---------GRMGDARKVF 174

Query: 218 DEMPERDELSWTTMMTGYVKNDYLDAAREFLD-----GMSENVGVAWNALISGY----VH 268
           D M ++D ++ + ++  Y +   L+     L      G+  N+ V+WN ++SG+     H
Sbjct: 175 DRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANI-VSWNGILSGFNRSGYH 233

Query: 269 RELKMLMLRIQ-----LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
           +E  ++  +I       D+ T +SV+ +  +S +  +G+ +H Y+++            V
Sbjct: 234 KEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDK----CV 289

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER-- 381
            +A++ +Y K G V     +FNQ    +    NA ++     GL+D+A  +FE  +E+  
Sbjct: 290 ISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTM 349

Query: 382 --NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
             N++SWT +I+G AQNG   E L+LF +M++ G KP        + +C  + AL +GR 
Sbjct: 350 ELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRS 409

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
            H   V      ++  G+ALI MYA+CG +  +  VFN MP  + V WN+++     HG 
Sbjct: 410 THGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGK 469

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA 559
               + ++E +++  + PD I+F ++LSAC   GL  EG +YF+ M   YGI P  +HY+
Sbjct: 470 AKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYS 529

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
             ++LL RAGK  EA D+I  +PF+P + +W ALL  CR+  N+DL   AAE+LF L P 
Sbjct: 530 CMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPE 589

Query: 620 HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPE 679
           + GTYVLLSN+YA  G W +   +R  M   G+KK PGCSWI+V N+V+  L  D +HP+
Sbjct: 590 NPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQ 649

Query: 680 AQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGA 739
              + + ++++  EMRK G+ P+  F LHD+E  ++E  L  HSEKLAV FGL+  P G 
Sbjct: 650 IDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGT 709

Query: 740 TVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            ++V+KNLRICGDCH   KF+S   GREI +RD  RFHHF+DG CSCGD+W
Sbjct: 710 PLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 192/411 (46%), Gaps = 48/411 (11%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           + + +H     SG      +   +  +Y +  ++  AR +FD +   D+V  + L+ AY+
Sbjct: 134 VGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYA 193

Query: 93  ----ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPD 148
                 + V++  EM  ++     + V +N +++ ++ +     A+ +F+ +      PD
Sbjct: 194 RKGCLEEVVRILSEM--ESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPD 251

Query: 149 NFTFTSVLSALALIVEEEKQCMQM----HCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
             T +SVL ++      + + + M    H  V+K G      V++A+I +Y K       
Sbjct: 252 QVTVSSVLPSVG-----DSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGK------- 299

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE-----NVGVAW 259
            S  + G    +F++    +       +TG  +N  +D A E  +   E     NV V+W
Sbjct: 300 -SGHVYGII-SLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNV-VSW 356

Query: 260 NALISGYVHR-------EL--KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
            ++I+G           EL  +M +  ++ +  T  S++ AC N      G+  H + +R
Sbjct: 357 TSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVR 416

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
                    ++ V +AL+ +Y KCG++N ++ +FN MP ++LV WN++++ +   G   E
Sbjct: 417 VHLLD----NVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKE 472

Query: 371 AKSLFEA-MRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKP 416
             S+FE+ MR R   + +S+T ++S   Q G  +EG K F  M  E G KP
Sbjct: 473 VMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKP 523



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 148/333 (44%), Gaps = 38/333 (11%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           ++ R +H ++I  G    + +I+ +ID+Y KS  +    +LF++    +       I   
Sbjct: 269 NMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGL 328

Query: 92  SASDNVKLAREMFN--KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
           S +  V  A EMF   K      + V + ++I   + N     A+ELFR+M+   VKP++
Sbjct: 329 SRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNH 388

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
            T  S+L A   I          H   V+        V +ALI +Y KC           
Sbjct: 389 VTIPSMLPACGNIA-ALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKC---------GR 438

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +  ++ VF+ MP ++ + W ++M G+            + G ++ V   + +L       
Sbjct: 439 INLSQIVFNMMPTKNLVCWNSLMNGFS-----------MHGKAKEVMSIFESL------- 480

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
               +  R++ D  ++TS++SAC   GL   G + +  ++  E    P   L   + +V 
Sbjct: 481 ----MRTRLKPDFISFTSLLSACGQVGLTDEGWK-YFKMMSEEYGIKPR--LEHYSCMVN 533

Query: 330 LYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
           L  + GK+ EA D+  +MP E D   W A+L++
Sbjct: 534 LLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNS 566


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 279/764 (36%), Positives = 413/764 (54%), Gaps = 91/764 (11%)

Query: 41  MISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ----PDIVARTTLIAAYSASDN 96
           M+ SG +P E   + +++    S  L   R +   + +     D+     L+  YS   +
Sbjct: 193 MVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGD 252

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
           + +A  +F K P    D V +NA I+    + +   A+EL   M+   + P+ FT +S+L
Sbjct: 253 IHMAALVFGKVP--KTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSIL 310

Query: 157 SALALIVEEEKQCM-QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARR 215
            A A           Q+H  ++K+       +  AL+ +Y K           L+  AR+
Sbjct: 311 KACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAK---------YGLLDDARK 361

Query: 216 VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY----VHREL 271
           VF+ +P +D L                                WNALISG      H E 
Sbjct: 362 VFEWIPRKDLL-------------------------------LWNALISGCSHGGCHGES 390

Query: 272 KMLMLRIQ-----LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
             L  R++     ++  T  +V+ + A+        QVHA   +            V N 
Sbjct: 391 LSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSH----VVNG 446

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           L+  YWKC  +  A  +F                               E     N++++
Sbjct: 447 LIDSYWKCNCLRYANKVF-------------------------------EEHSSDNIIAF 475

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
           T MI+ L+Q  +GE+ +KLF +M  +G +P  +  +  + +CA L A E G+Q+HA L+ 
Sbjct: 476 TSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIK 535

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
             + + + AGNAL+  YA+CG +E A+  F+ +P+   VSW+AMI  L QHG+G RA+++
Sbjct: 536 RKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAMIGGLAQHGHGKRALDV 595

Query: 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
           + +M+ E I P+ IT  +VL ACNHAGLV E + YF +M   +GI   E+HY+  IDLL 
Sbjct: 596 FRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMIDLLG 655

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626
           RAGK  +A ++++S+PF+ +A +W ALLA  R+H + +LG  AAE+LF L P  +GT+VL
Sbjct: 656 RAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELGKLAAEKLFVLEPEKSGTHVL 715

Query: 627 LSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKY 686
           L+N YA+ G WD+ A+VRKLM+D  VKKEP  SW+E+ ++VH F+V D +HP A+ +Y  
Sbjct: 716 LANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVELKDRVHTFIVGDKSHPRARDIYAK 775

Query: 687 LEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKN 746
           LE+L   M K GYVP+ +  LHD++  +KE  LS HSE+LAVAF L+  P GA +RV KN
Sbjct: 776 LEELGDLMSKAGYVPNLEVDLHDVDKSEKELLLSHHSERLAVAFALISTPAGAPIRVKKN 835

Query: 747 LRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           LRIC DCH AFKF+SK+V REI++RD  RFHHF DG CSCGDYW
Sbjct: 836 LRICRDCHVAFKFISKIVSREIIIRDINRFHHFSDGACSCGDYW 879



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 129/435 (29%), Positives = 201/435 (46%), Gaps = 79/435 (18%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
            +H  ++KSG  L  +  N L+S Y KC          L G+ARRVFDE P+   +SW++
Sbjct: 25  HIHAHLLKSG--LLHAFRNHLLSFYSKC---------RLPGSARRVFDETPDPCHVSWSS 73

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++T Y  N      RE L         A+ A           M    ++ +EF    V+ 
Sbjct: 74  LVTAYSNNAL---PREAL--------AAFRA-----------MRARGVRCNEFALPIVLK 111

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
              ++GL   G QVHA  + T                            + DIF      
Sbjct: 112 CAPDAGL---GVQVHAVAVST--------------------------GLSGDIFVA---- 138

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLF-EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
                NA+++ Y   G +DEA+ +F EA R+RN +SW  M+S   +N    + ++LF +M
Sbjct: 139 -----NALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEM 193

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
              G +P ++ F+  + +C G   LE GR++HA +V +GYD  +   NAL+ MY++ G +
Sbjct: 194 VWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDI 253

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
             A  VF  +P  D VSWNA I+    HG+   A+EL  QM   G++P+  T  ++L A 
Sbjct: 254 HMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKA- 312

Query: 530 NHAGLVKEGRRYFETMHG--PYGIPPGEDHYA-RFIDLLCRAGKFSEAKDVIDSLPFKPS 586
             AG           +HG         +D+     +D+  + G   +A+ V + +P K  
Sbjct: 313 -CAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRK-D 370

Query: 587 APIWEALLAGCRIHG 601
             +W AL++GC  HG
Sbjct: 371 LLLWNALISGCS-HG 384



 Score =  159 bits (402), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 145/529 (27%), Positives = 224/529 (42%), Gaps = 117/529 (22%)

Query: 3   MKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCK 62
           M++ + I  L  RYA+   L          L   +HAH++ SG        N L+  Y K
Sbjct: 1   MRSPESISPLLTRYAATQSLF---------LGAHIHAHLLKSGL--LHAFRNHLLSFYSK 49

Query: 63  SLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
                 AR +FDE P P  V+ ++L+ AYS   N  L RE                    
Sbjct: 50  CRLPGSARRVFDETPDPCHVSWSSLVTAYS---NNALPRE-------------------- 86

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTG 182
                     A+  FR MR   V+ + F    VL        +    +Q+H   V +G  
Sbjct: 87  ----------ALAAFRAMRARGVRCNEFALPIVLKC----APDAGLGVQVHAVAVSTGLS 132

Query: 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMP-ERDELSWTTMMTGYVKNDYL 241
               V NAL+++Y              +  ARRVFDE   +R+ +SW  MM+ +VKND  
Sbjct: 133 GDIFVANALVAMY---------GGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRC 183

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
             A E    M       W+                 ++ +EF ++ V++AC  S     G
Sbjct: 184 SDAVELFGEM------VWSG----------------VRPNEFGFSCVVNACTGSRDLEAG 221

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
           ++VHA ++RT      +  +   NALV +Y K G ++ A  +F ++P+ D+VSWNA    
Sbjct: 222 RKVHAMVVRT----GYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAF--- 274

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
                                       ISG   +G+ +  L+L  QM+  G  P  +  
Sbjct: 275 ----------------------------ISGCVLHGHDQHALELLLQMKSSGLVPNVFTL 306

Query: 422 AGAI--TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
           +  +   + AG GA   GRQ+H  ++ +  DS    G AL+ MYA+ G+++ A  VF  +
Sbjct: 307 SSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWI 366

Query: 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
           P  D + WNA+I+     G    ++ L+ +M KEG   +R T   VL +
Sbjct: 367 PRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKS 415



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 144/562 (25%), Positives = 247/562 (43%), Gaps = 79/562 (14%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           DI     L+A Y     V  AR +F++   + R+ V +N M++A+  N     A+ELF +
Sbjct: 134 DIFVANALVAMYGGFGFVDEARRVFDEAA-RDRNAVSWNGMMSAFVKNDRCSDAVELFGE 192

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M    V+P+ F F+ V++A     + E    ++H  VV++G        NAL+ +Y K  
Sbjct: 193 MVWSGVRPNEFGFSCVVNACTGSRDLEAG-RKVHAMVVRTGYDKDVFTANALVDMYSKLG 251

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                     +  A  VF ++P+ D +SW   ++G V + +   A E L           
Sbjct: 252 D---------IHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELL----------- 291

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVIS--ACANSGLFRLGKQVHAYLLRTEAKPTP 317
                      L+M    +  + FT +S++   A A +G F LG+Q+H ++++  A    
Sbjct: 292 -----------LQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDD 340

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
              +    ALV +Y K G +++AR +F  +P +DL+ WNA++S                 
Sbjct: 341 YIGV----ALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALIS----------------- 379

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
                         G +  G   E L LF +MR EG        A  + S A L A+ + 
Sbjct: 380 --------------GCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDT 425

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
            Q+HA     G+ S     N LI  Y +C  +  AN VF    + + +++ +MI AL Q 
Sbjct: 426 TQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQC 485

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
            +G  AI+L+ +ML++G+ PD     ++L+AC      ++G++    +     +    D 
Sbjct: 486 DHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMT---DV 542

Query: 558 YA--RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF- 614
           +A    +    + G   +A      LP K     W A++ G   HG+    +    ++  
Sbjct: 543 FAGNALVYTYAKCGSIEDADLAFSGLPDKGVVS-WSAMIGGLAQHGHGKRALDVFRRMVD 601

Query: 615 -QLMPHHAG-TYVLLSNMYANL 634
            ++ P+H   T VL +  +A L
Sbjct: 602 ERIAPNHITLTSVLCACNHAGL 623



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 144/325 (44%), Gaps = 47/325 (14%)

Query: 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL 352
           A   LF LG  +HA+LL++             N L++ Y KC     AR +F++ P+   
Sbjct: 16  ATQSLF-LGAHIHAHLLKSG------LLHAFRNHLLSFYSKCRLPGSARRVFDETPDPCH 68

Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
           VSW+++++AY +  L  EA + F AMR R                               
Sbjct: 69  VSWSSLVTAYSNNALPREALAAFRAMRAR------------------------------- 97

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
           G +  ++A    +  CA    L  G Q+HA  V +G    +   NAL+ MY   G V+ A
Sbjct: 98  GVRCNEFALP-IVLKCAPDAGL--GVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEA 154

Query: 473 NCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
             VF+    + ++VSWN M++A  ++   + A+EL+ +M+  G+ P+   F  V++AC  
Sbjct: 155 RRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTG 214

Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
           +  ++ GR+    M    G           +D+  + G    A  V   +P K     W 
Sbjct: 215 SRDLEAGRK-VHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVP-KTDVVSWN 272

Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQL 616
           A ++GC +HG+      A E L Q+
Sbjct: 273 AFISGCVLHGHDQ---HALELLLQM 294



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 142/328 (43%), Gaps = 73/328 (22%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           VHA     GF    H++N LID Y K   L YA  +F+E    +I+A T++I A S  D 
Sbjct: 428 VHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCD- 486

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
                                           +G  AI+LF +M R  ++PD F  +S+L
Sbjct: 487 --------------------------------HGEDAIKLFMEMLRKGLEPDPFVLSSLL 514

Query: 157 SALALIVEEEKQCMQMHCTVVKSG--TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           +A A +   E Q  Q+H  ++K    T +F    NAL+  Y KC S         +  A 
Sbjct: 515 NACASLSAYE-QGKQVHAHLIKRKFMTDVFAG--NALVYTYAKCGS---------IEDAD 562

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
             F  +P++  +SW+ M+ G  ++ +    +  LD                 V R  +M+
Sbjct: 563 LAFSGLPDKGVVSWSAMIGGLAQHGH---GKRALD-----------------VFR--RMV 600

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
             RI  +  T TSV+ AC ++GL    K    Y    +     + +    + ++ L  + 
Sbjct: 601 DERIAPNHITLTSVLCACNHAGLVDEAK---GYFSSMKEMFGIDRTEEHYSCMIDLLGRA 657

Query: 335 GKVNEARDIFNQMP-ERDLVSWNAILSA 361
           GK+++A ++ N MP E +   W A+L+A
Sbjct: 658 GKLDDAMELVNSMPFEANAAVWGALLAA 685



 Score = 44.7 bits (104), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 2/110 (1%)

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           +T  A   +L  G  +HA L+ SG   +    N L++ Y++C +  +A  VF+  P+   
Sbjct: 11  LTRYAATQSLFLGAHIHAHLLKSGLLHAFR--NHLLSFYSKCRLPGSARRVFDETPDPCH 68

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
           VSW++++ A   +     A+  +  M   G+  +      VL     AGL
Sbjct: 69  VSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAGL 118


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/575 (41%), Positives = 346/575 (60%), Gaps = 17/575 (2%)

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY---------VHRELKMLMLRIQ 279
           + M+  Y  +  +D++    +G+ E   + +N++I  Y         V     M      
Sbjct: 109 SKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFT 168

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            D FT+  V+ +        +GK VH  +LR       +F L V  +L+ LY KCG++N+
Sbjct: 169 GDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGL----QFDLYVATSLIILYGKCGEIND 224

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
           A  +F+ M  RD+ SWNA+L+ Y  +G ID A ++FE M  RN++SWT MISG +Q+G  
Sbjct: 225 AGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLA 284

Query: 400 EEGLKLFSQMRLE--GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN 457
           ++ L LF +M  E  G +P        + +CA L  LE GRQ+H      G +S+ S   
Sbjct: 285 QQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLI 344

Query: 458 ALITMYARCG-VVEAANCVFNTMPNVDS-VSWNAMIAALGQHGNGARAIELYEQMLKEGI 515
           AL  MYA+CG +V+A NC      N  + ++WN MI A   +G+G +A+  + +M++ GI
Sbjct: 345 ALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGI 404

Query: 516 LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAK 575
            PD ITF  +LS C+H+GLV  G +YF  M   Y I P  +HYA   DLL RAG+ +EA 
Sbjct: 405 QPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEAS 464

Query: 576 DVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLG 635
            ++  +P      IW +LLA CR H N+++   AA +LF L P + G YVLLSNMYA  G
Sbjct: 465 KLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAG 524

Query: 636 RWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMR 695
           RW +  ++R +++ +G KK PGCSWIE++ K H+FL  DT+HP+ + +Y +LE L  +M+
Sbjct: 525 RWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMK 584

Query: 696 KLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHN 755
             GY PDT +VLHD+  ++KE+ L  HSEKLAVAFG++  P    +RV KNLRICGDCH 
Sbjct: 585 AAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHT 644

Query: 756 AFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           A  F+S++ GRE++VRD  RFHHF+ G CSCGDYW
Sbjct: 645 AMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 679



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 172/396 (43%), Gaps = 68/396 (17%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L   VHAHM+  G +P   + ++++  Y  S  +  + ++F+ I +P             
Sbjct: 88  LGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPS------------ 135

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                ++ +N+MI AY+        +  +  M       D FTF
Sbjct: 136 ---------------------SLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTF 174

Query: 153 TSVL-SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             VL S++ L+     +C+  H  +++ G      V  +LI +Y KC           + 
Sbjct: 175 PFVLKSSVELLSVWMGKCV--HGLILRIGLQFDLYVATSLIILYGKC---------GEIN 223

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A +VFD M  RD  SW  ++ GY K+  +DAA    + M     V+W  +ISGY    L
Sbjct: 224 DAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGL 283

Query: 272 KMLMLRIQLDEF------------TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
               L +  DE             T  SV+ ACA       G+Q+H    R         
Sbjct: 284 AQQALSL-FDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASV 342

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQM--PERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
            +    AL  +Y KCG + +AR+ F+++   E++L++WN +++AY S G   +A S F  
Sbjct: 343 LI----ALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFRE 398

Query: 378 MRERNL----LSWTVMISGLAQNGYGEEGLKLFSQM 409
           M +  +    +++T ++SG + +G  + GLK F+ M
Sbjct: 399 MIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHM 434



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 94/216 (43%), Gaps = 32/216 (14%)

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P   ++A       GL  L+ G Q+HA ++  G   +   G+ ++  YA  G ++++  V
Sbjct: 68  PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSV 127

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA------- 528
           FN +    S+ +N+MI A  ++G   R +  Y  M   G   D  TF  VL +       
Sbjct: 128 FNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSV 187

Query: 529 ----CNHAGLVKEGRRYFETMHGPYGIPPGEDHY--ARFIDLLCRAGKFSEAKDVIDSLP 582
               C H  +++ G ++              D Y     I L  + G+ ++A  V D++ 
Sbjct: 188 WMGKCVHGLILRIGLQF--------------DLYVATSLIILYGKCGEINDAGKVFDNMT 233

Query: 583 FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
            +  +  W ALLAG    G ID    AA  +F+ MP
Sbjct: 234 IRDVSS-WNALLAGYTKSGCID----AALAIFERMP 264



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 24/180 (13%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           L A Y+   ++  AR  F+K     ++ + +N MITAY+   +G  A+  FR+M +  ++
Sbjct: 346 LTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQ 405

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLF-----TSVLNALISVYVKCVSS 201
           PD+ TFT +LS  +            H  +V  G   F     T  +N  +  Y  CV+ 
Sbjct: 406 PDDITFTGLLSGCS------------HSGLVDVGLKYFNHMSTTYSINPRVEHYA-CVAD 452

Query: 202 PFVSSRSLMGAARRVFDEMPERDELS-WTTMMTGYVKNDYLD----AAREFLDGMSENVG 256
             +     +  A ++  EMP     S W +++    K+  L+    AAR+      EN G
Sbjct: 453 -LLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTG 511


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 265/716 (37%), Positives = 412/716 (57%), Gaps = 36/716 (5%)

Query: 82  VARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMR 141
           +A  + IA Y+    ++ AR +F++ P K    V +N+M+  Y  N+    A  LF  M 
Sbjct: 17  IAYNSQIARYARIGQIESARRVFDEMPDK--GIVSWNSMVAGYFQNNRPREARYLFDKMP 74

Query: 142 RDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSS 201
             +    N   +  +    ++ E  K    M    V S T        A++  YV+    
Sbjct: 75  ERNTVSWNGLISGYVKN-RMVSEARKAFDTMPERNVVSWT--------AMVRGYVQ---- 121

Query: 202 PFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNA 261
                  L+  A  +F +MPE++ +SWT M+ G ++   +D AR   D M     VA   
Sbjct: 122 -----EGLVSEAETLFWQMPEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTN 176

Query: 262 LISGYVHRELKMLMLRIQLDE------FTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           +ISGY   E ++   R   DE       ++T++IS    +G   + +++   +       
Sbjct: 177 MISGYCQ-EGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVM------- 228

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
            PE +     A++  Y + G++ EA ++F+ MP + +V+ NA++  +   G + +A+ +F
Sbjct: 229 -PEKNEVSWTAMLMGYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVF 287

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
           + +RE++  +W+ MI    + G+  E L LF+ M+ EG +    +    ++ CA L +L+
Sbjct: 288 DQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLD 347

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
           +GRQ+HA+LV S +DS +   + LITMY +CG +  A  +F+     D V WN++I    
Sbjct: 348 HGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYA 407

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
           QHG    A++++ +M   G+  D +TF+ VLSAC++ G VKEG   FE+M   Y + P  
Sbjct: 408 QHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKT 467

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
           +HYA  +DLL RAG  ++A D+I  +P +  A IW ALL  CR H N++L   AA++L Q
Sbjct: 468 EHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQ 527

Query: 616 LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVD-D 674
           L P +AG Y+LLSN+YA+ GRW D A +R+ MR + V K PGCSWIEV+ +VH+F     
Sbjct: 528 LEPKNAGPYILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVHMFTGGVS 587

Query: 675 TAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMK 734
           T HPE  ++ K LE+L   +R+ GY PD+ FVLHD++ ++K  +L  HSE+LAVAFGL+K
Sbjct: 588 TKHPELSSIMKMLEKLDGMLREAGYYPDSSFVLHDVDEEEKVRSLGHHSERLAVAFGLLK 647

Query: 735 LPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +P G  +RV+KNLR+CGDCH+A K ++K+ GREI++RD  RFHHF+DG CSC DYW
Sbjct: 648 VPEGMPIRVMKNLRVCGDCHSAIKLIAKITGREIILRDANRFHHFKDGFCSCRDYW 703



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 111/458 (24%), Positives = 197/458 (43%), Gaps = 116/458 (25%)

Query: 48  PREHIINR--LIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFN 105
           P + ++ R  +I  YC+  +L  AR LFDE+P+ ++++ TT+I+ Y  +  V +AR++F 
Sbjct: 167 PVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFE 226

Query: 106 KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEE 165
             P K  + V + AM+  Y+       A ELF          D     +V++  A+I+  
Sbjct: 227 VMPEK--NEVSWTAMLMGYTQGGRIEEASELF----------DAMPVKAVVACNAMIL-- 272

Query: 166 EKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDE 225
                         G G    V                         AR+VFD++ E+D+
Sbjct: 273 --------------GFGQNGEV-----------------------AKARQVFDQIREKDD 295

Query: 226 LSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFT 284
            +W+ M+  Y +  + ++A   F     E V   + +LI                     
Sbjct: 296 GTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLI--------------------- 334

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
             SV+S CA+      G+QVHA L++++     +  + V + L+T+Y KCG + +AR IF
Sbjct: 335 --SVLSVCASLASLDHGRQVHAELVKSQF----DSDVFVASVLITMYVKCGDLVKARQIF 388

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           ++   +D+V WN+I++ Y   GL++EA  +F  M            SG+A +G       
Sbjct: 389 DRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCS----------SGMATDG------- 431

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY--DSSLSAGNALITM 462
                           F G +++C+  G ++ G ++   +  S Y  +        ++ +
Sbjct: 432 --------------VTFVGVLSACSYTGKVKEGLEIFESM-KSKYLVEPKTEHYACMVDL 476

Query: 463 YARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
             R G+V  A  +   MP   D++ W A++ A   H N
Sbjct: 477 LGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMN 514



 Score =  115 bits (289), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 160/370 (43%), Gaps = 54/370 (14%)

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           Y + ++   NS + R  +       R      P+  +   N++V  Y++  +  EAR +F
Sbjct: 11  YCTSVAIAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLF 70

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           ++MPER+ VSWN ++S YV   ++ EA+  F+ M ERN++SWT M+ G  Q G   E   
Sbjct: 71  DKMPERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAET 130

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           LF QM  +            ++    LG L   R+                         
Sbjct: 131 LFWQMPEK----------NVVSWTVMLGGLIQVRR------------------------- 155

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
               ++ A  +F+ MP  D V+   MI+   Q G  A A EL+++M +  +    I++ T
Sbjct: 156 ----IDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNV----ISWTT 207

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584
           ++S     G V   R+ FE M         E  +   +    + G+  EA ++ D++P K
Sbjct: 208 MISGYVQNGQVDVARKLFEVMP-----EKNEVSWTAMLMGYTQGGRIEEASELFDAMPVK 262

Query: 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLF-QLMPHHAGTYVLLSNMYANLGRWDDAARV 643
                  A++ G   +G     +  A Q+F Q+     GT+  +  +Y   G   +A  +
Sbjct: 263 AVVAC-NAMILGFGQNGE----VAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNL 317

Query: 644 RKLMRDRGVK 653
             LM+  GV+
Sbjct: 318 FALMQREGVQ 327



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 2/110 (1%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R VHA ++ S F     + + LI +Y K   LV AR +FD     DIV   ++I  Y+ 
Sbjct: 349 GRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQ 408

Query: 94  SDNVKLAREMFNK--TPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMR 141
              V+ A ++F++  +     D V +  +++A S+       +E+F  M+
Sbjct: 409 HGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMK 458


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 251/646 (38%), Positives = 385/646 (59%), Gaps = 69/646 (10%)

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           ++P+   ++ +L+    +  + KQ   +H  +  S       +LN ++++Y KC S    
Sbjct: 101 LEPERTLYSKMLNKCTYL-RKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGS---- 155

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                +  A+ +FD+MP +D +SWT +++GY ++     A                    
Sbjct: 156 -----LEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFP--------------- 195

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
                  KML L  Q +EFT +S++ A         G+Q+HA+ L    K   + ++ V 
Sbjct: 196 -------KMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSL----KYGYDMNVHVG 244

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
           ++L+ +Y +   + EA+ IFN +  +++VSWNA                           
Sbjct: 245 SSLLDMYARWAHMREAKVIFNSLAAKNVVSWNA--------------------------- 277

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
               +I+G A+ G GE  ++LF QM  +GF+P  + ++ ++ +CA  G+LE G+ +HA +
Sbjct: 278 ----LIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYS-SVLACASSGSLEQGKWVHAHV 332

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
           + SG       GN LI MYA+ G ++ A  VF  +   D VSWN++I+   QHG GA A+
Sbjct: 333 IKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEAL 392

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
           +L+EQMLK  + P+ ITFL+VL+AC+H+GL+ EG+ YFE M   + I     H+   +DL
Sbjct: 393 QLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMK-KHKIEAQVAHHVTVVDL 451

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624
           L RAG+ +EA   I+ +P KP+A +W ALL  CR+H N+DLG+ AAEQ+F+L PH +G +
Sbjct: 452 LGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPH 511

Query: 625 VLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVY 684
           VLLSN+YA+ GR  DAA+VRK+M++ GVKKEP CSW+E++N+VHVF+ +D +HP  + + 
Sbjct: 512 VLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQ 571

Query: 685 KYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVL 744
           +  E++  +++++GYVPDT  VL  M    +E  L  HSEKLA+AF ++K P G T+R+ 
Sbjct: 572 RMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIK 631

Query: 745 KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KN+RICGDCH+AFKF S+V+GREI+VRD  RFHHF  G CSC DYW
Sbjct: 632 KNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 677



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 112/480 (23%), Positives = 203/480 (42%), Gaps = 102/480 (21%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R++HAH+ SS F+    ++N ++++Y K   L  A+ LFD++P  D+V+ T LI+ YS 
Sbjct: 124 GRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQ 183

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
           S                                      A+ LF  M     +P+ FT +
Sbjct: 184 SGQAS---------------------------------EALALFPKMLHLGFQPNEFTLS 210

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           S+L A       +    Q+H   +K G  +   V ++L+ +Y +            M  A
Sbjct: 211 SLLKASG-TGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAH---------MREA 260

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           + +F+ +  ++ +SW  ++ G+ +            G  E+V           +    +M
Sbjct: 261 KVIFNSLAAKNVVSWNALIAGHARK-----------GEGEHV-----------MRLFXQM 298

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
           L    +   FTY+SV+ ACA+SG    GK VHA+++++  +P       + N L+ +Y K
Sbjct: 299 LRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQPIAY----IGNTLIDMYAK 353

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
            G + +A+ +F ++ ++D+VSWN+I+S Y   GL                          
Sbjct: 354 SGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGL-------------------------- 387

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL 453
                G E L+LF QM     +P +  F   +T+C+  G L+ G+     +     ++ +
Sbjct: 388 -----GAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQV 442

Query: 454 SAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           +    ++ +  R G +  AN     MP    +  W A++ A   H N    +   EQ+ +
Sbjct: 443 AHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFE 502



 Score =  100 bits (250), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 158/340 (46%), Gaps = 52/340 (15%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLI--------DIYCKSLKLVYARTLFDEIPQPDIV 82
           +S A ++   M+  GF+P E  ++ L+        D + + L     +  +D     ++ 
Sbjct: 187 ASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDM----NVH 242

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR 142
             ++L+  Y+   +++ A+ +FN   L  ++ V +NA+I  ++    G   + LF  M R
Sbjct: 243 VGSSLLDMYARWAHMREAKVIFNS--LAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLR 300

Query: 143 DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSP 202
              +P +FT++SVL+  +    E+ + +  H  V+KSG      + N LI +Y K  S  
Sbjct: 301 QGFEPTHFTYSSVLACASSGSLEQGKWVHAH--VIKSGGQPIAYIGNTLIDMYAKSGS-- 356

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL 262
                  +  A++VF  + ++D +SW ++++GY ++     A +  +             
Sbjct: 357 -------IKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFE------------- 396

Query: 263 ISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
                    +ML  ++Q +E T+ SV++AC++SGL   G+    Y      K   E  + 
Sbjct: 397 ---------QMLKAKVQPNEITFLSVLTACSHSGLLDEGQ----YYFELMKKHKIEAQVA 443

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSA 361
            +  +V L  + G++NEA     +MP +   + W A+L A
Sbjct: 444 HHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGA 483


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 265/788 (33%), Positives = 416/788 (52%), Gaps = 111/788 (14%)

Query: 7   DYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKL 66
           D ++ +   +   L++C     +     + +H  +I++ F      +  ++++Y K  ++
Sbjct: 141 DDVKPVVYNFTYLLKVCGDNADLKR--GKEIHGQLITNSFAANVFAMTGVVNMYAKCRQI 198

Query: 67  VYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSH 126
             A  +FD +P+ D+V+  T+IA                                  +S 
Sbjct: 199 DDAYKMFDRMPERDLVSWNTIIA---------------------------------GFSQ 225

Query: 127 NSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA----LIVEEEKQCMQMHCTVVKSGTG 182
           N     A+EL   M+ +  +PD+ T  +VL A A    L+V +      +H   +++G  
Sbjct: 226 NGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGK-----SIHGYAIRAGFA 280

Query: 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLD 242
              ++  AL  +Y KC S         +  AR +FD M ++  +SW +MM GYV+N   +
Sbjct: 281 KLVNISTALADMYSKCGS---------VETARLIFDGMDQKTVVSWNSMMDGYVQNGEPE 331

Query: 243 AAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGK 302
            A    +                      KML   I     T    + ACA+ G    GK
Sbjct: 332 KAIAVFE----------------------KMLEEGIDPTGVTIMEALHACADLGDLERGK 369

Query: 303 QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY 362
            VH ++ +          + V N+L+++Y KC +V+ A DIFN +  R  VSWNA++  Y
Sbjct: 370 FVHKFVDQLNLGS----DISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGY 425

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
              G + EA                               L  FS+M+  G KP  +   
Sbjct: 426 AQNGRVSEA-------------------------------LNCFSEMKSLGMKPDSFTMV 454

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
             I + A L    + + +H  ++ S  D ++    AL+ MY++CG +  A  +F+ + + 
Sbjct: 455 SVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDR 514

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
             ++WNAMI   G HG G  A++L+++M K  + P+ IT+L+V+SAC+H+GLV EG R+F
Sbjct: 515 HVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHF 574

Query: 543 ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
           ++M   YG+ P  DHY   +DLL RAG+  EA D I+++P  P   ++ A+L  C+IH N
Sbjct: 575 KSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKN 634

Query: 603 IDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIE 662
           I++G +AA++LF+L P   G +VLL+N+YA+  +W   A VRK M  +G+KK PGCS +E
Sbjct: 635 IEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVE 694

Query: 663 VDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTH 722
           + N+VH F    T HP+++ +Y +LE+LV E++  GYVPDT  +L D+E D +E  L++H
Sbjct: 695 LRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLIL-DVEDDVQEQLLNSH 753

Query: 723 SEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDG 782
           SEKLA+AFGL+    G T+ V KNLR+CGDCHNA K++S V GREI+VRD +RFHHF++G
Sbjct: 754 SEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNG 813

Query: 783 KCSCGDYW 790
            CSCGDYW
Sbjct: 814 ICSCGDYW 821



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 157/587 (26%), Positives = 261/587 (44%), Gaps = 103/587 (17%)

Query: 84  RTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD 143
           +T L++ +S   ++  A  +F   P+  +    Y+ M+  Y+ NS+   A+     MR D
Sbjct: 84  QTKLVSLFSKYGSINEAARVFE--PIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYD 141

Query: 144 DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
           DVKP  + FT +L        + K+  ++H  ++ +        +  ++++Y KC     
Sbjct: 142 DVKPVVYNFTYLLKVCG-DNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQ--- 197

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
                 +  A ++FD MPERD +SW T++ G+ +N +   A E                 
Sbjct: 198 ------IDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALE----------------- 234

Query: 264 SGYVHRELKMLMLRIQ-----LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                     L+LR+Q      D  T  +V+ A A+ GL  +GK +H Y +R        
Sbjct: 235 ----------LVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRA------G 278

Query: 319 FSLPVN--NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
           F+  VN   AL  +Y KCG V  AR IF+ M ++ +VSWN+++  YV  G  ++A ++FE
Sbjct: 279 FAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFE 338

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
            M E                               EG  P       A+ +CA LG LE 
Sbjct: 339 KMLE-------------------------------EGIDPTGVTIMEALHACADLGDLER 367

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           G+ +H  +      S +S  N+LI+MY++C  V+ A+ +FN +     VSWNAMI    Q
Sbjct: 368 GKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQ 427

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
           +G  + A+  + +M   G+ PD  T ++V+ A     +     R+ + +HG   I    D
Sbjct: 428 NGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVT----RHAKWIHGLI-IRSCLD 482

Query: 557 H----YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
                    +D+  + G    A+ + D +  +     W A++ G   HG   LG +AA  
Sbjct: 483 KNIFVTTALVDMYSKCGAIHMARKLFDMISDR-HVITWNAMIDGYGTHG---LG-RAALD 537

Query: 613 LFQLMPHHAG-----TYVLLSNMYANLGRWDDAARVRKLMR-DRGVK 653
           LF  M   A      TY+ + +  ++ G  D+  R  K M+ D G++
Sbjct: 538 LFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLE 584


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 275/759 (36%), Positives = 395/759 (52%), Gaps = 108/759 (14%)

Query: 36  SVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASD 95
           S+H   I  G      + N L+D YCK   L  AR +F                      
Sbjct: 156 SLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVF---------------------- 193

Query: 96  NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV 155
                 EM +K      D V YNAM+   S       A++LF  MRR  +   +FTF+S+
Sbjct: 194 -----LEMHDK------DAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSI 242

Query: 156 LSALA----LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           L+  A    L++       Q+H  V++S + L   V N+L+  Y KC           + 
Sbjct: 243 LTVAAGMAHLLLGH-----QVHALVLRSTSVLNVFVNNSLLDFYSKC---------DCLD 288

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
             RR+FDEMPERD +S+  ++  Y                      AWN   +  +    
Sbjct: 289 DMRRLFDEMPERDNVSYNVIIAAY----------------------AWNQCAATVLRLFR 326

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
           +M  L        Y +++S   +     +GKQ+HA L                       
Sbjct: 327 EMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQL----------------------- 363

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
                      +   +   DL+  NA++  Y   G++D AKS F    E++ +SWT +I+
Sbjct: 364 -----------VLLGLASEDLLG-NALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALIT 411

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
           G  QNG  EE L+LFS MR  G +P    F+  I + + L  +  GRQLH+ L+ SGY S
Sbjct: 412 GYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKS 471

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
           S+ +G+ L+ MYA+CG ++ A   F+ MP  +S+SWNA+I+A   +G    AI+++E ML
Sbjct: 472 SVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGML 531

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571
             G  PD +TFL+VL+AC+H GL  E  +YF  M   Y I P ++HYA  ID L R G F
Sbjct: 532 HCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCF 591

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631
           S+ + ++  +PFK    IW ++L  CRIHGN +L   AA++LF + P  A  YV+LSN+Y
Sbjct: 592 SQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIY 651

Query: 632 ANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLV 691
           A  G+W+DAA V+K+MRDRGV+KE G SW+E+  K++ F  +D   P    +   L++L 
Sbjct: 652 ARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLY 711

Query: 692 LEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICG 751
            EM K GY PD    LH ++ + K  +L  HSE+LA+AF LM  P G  +R++KNL  C 
Sbjct: 712 KEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACL 771

Query: 752 DCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           DCH   K +SK+V R+I+VRD +RFHHF+DG CSCGDYW
Sbjct: 772 DCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 160/581 (27%), Positives = 263/581 (45%), Gaps = 84/581 (14%)

Query: 39  AHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVK 98
           A M+ +GF    + +N  +     S  L  AR +FD++P  +I +   +++AYS+S ++ 
Sbjct: 32  ARMVKTGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLP 91

Query: 99  LAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA 158
            A+ +F  +P   R+   +  M+ A++       A+ LFR M  + V PD  T T+VL+ 
Sbjct: 92  AAQHLFLSSP--HRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNL 149

Query: 159 LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFD 218
               V        +H   +K G      V N L+  Y K           L+ AARRVF 
Sbjct: 150 PGCTVP------SLHPFAIKFGLDTHVFVCNTLLDAYCK---------HGLLAAARRVFL 194

Query: 219 EMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRI 278
           EM ++D +++  MM G  K      A +    M            +G            I
Sbjct: 195 EMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRR----------AG------------I 232

Query: 279 QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
               FT++S+++  A      LG QVHA +LR+    T   ++ VNN+L+  Y KC  ++
Sbjct: 233 PATHFTFSSILTVAAGMAHLLLGHQVHALVLRS----TSVLNVFVNNSLLDFYSKCDCLD 288

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGY 398
           + R +F++MPERD VS+N I++AY                               A N  
Sbjct: 289 DMRRLFDEMPERDNVSYNVIIAAY-------------------------------AWNQC 317

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
               L+LF +M+  GF      +A  ++    L  +  G+Q+HAQLV  G  S    GNA
Sbjct: 318 AATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNA 377

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           LI MY++CG+++AA   F+      ++SW A+I    Q+G    A++L+  M + G+ PD
Sbjct: 378 LIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPD 437

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY----ARFIDLLCRAGKFSEA 574
           R TF +++ A +   ++  GR+    +H  Y I  G        +  +D+  + G   EA
Sbjct: 438 RATFSSIIKASSSLAMIGLGRQ----LHS-YLIRSGYKSSVFSGSVLVDMYAKCGCLDEA 492

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
               D +P + S   W A+++    +G     I+  E +  
Sbjct: 493 LRTFDEMPERNSIS-WNAVISAYAHYGEAKNAIKMFEGMLH 532



 Score = 47.8 bits (112), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 17/168 (10%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R +H+++I SG+K      + L+D+Y K   L  A   FDE+P+ + ++   +I+AY+
Sbjct: 456 LGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYA 515

Query: 93  ASDNVKLAREMFNK------TPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DV 145
                K A +MF         P    D+V + +++ A SHN      ++ F  M+    +
Sbjct: 516 HYGEAKNAIKMFEGMLHCGFNP----DSVTFLSVLAACSHNGLADECMKYFHLMKHQYSI 571

Query: 146 KPDNFTFTSVLSALALI---VEEEKQCMQMHCTVVKSGTGLFTSVLNA 190
            P    +  V+  L  +    + +K  ++M     K+   ++TS+L++
Sbjct: 572 SPWKEHYACVIDTLGRVGCFSQVQKMLVEM---PFKADPIIWTSILHS 616


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 277/761 (36%), Positives = 401/761 (52%), Gaps = 102/761 (13%)

Query: 33   LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
            L   +HA +I S F P   + N L+++Y K+  +  A   F   P+ D+++         
Sbjct: 912  LGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLIS--------- 962

Query: 93   ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                    +N MI++Y+ N+    AI  FRD+ RD +KPD FT 
Sbjct: 963  ------------------------WNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTL 998

Query: 153  TSVLSALALIVEEEKQCM--QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
             SVL A +   E E   +  Q+H   +K G    + V  ALI +Y K            M
Sbjct: 999  ASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKG---------GKM 1049

Query: 211  GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
              A  +     + D  SW  +M GY+K++    A E    M E                 
Sbjct: 1050 DEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHE----------------- 1092

Query: 271  LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
                 + I +DE T  + I A       + GKQ+ AY ++          L V++ ++ +
Sbjct: 1093 -----MGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNN----DLWVSSGVLDM 1143

Query: 331  YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
            Y KCG +  A ++F ++   D V+W  ++S Y+                           
Sbjct: 1144 YIKCGDMPNALELFGEISRPDEVAWTTMISGYI--------------------------- 1176

Query: 391  SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
                +NG  +  L ++  MR+ G +P +Y FA  I + + L ALE G+Q+HA +V   Y 
Sbjct: 1177 ----ENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYS 1232

Query: 451  SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
                 G +L+ MY +CG V+ A  VF  M     V WNAM+  L QHG+   A+ L+  M
Sbjct: 1233 LDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTM 1292

Query: 511  LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
               GI PD++TF+ VLSAC+H+GL  E  +YF+ M   YGI P  +HY+  +D L RAG+
Sbjct: 1293 QSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGR 1352

Query: 571  FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630
              EA++VI S+PFK SA ++ ALL  CR  G+ +   + A++L  L P  +  YVLLSN+
Sbjct: 1353 IQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNI 1412

Query: 631  YANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQL 690
            YA   +WDD    R +M+ + VKK+PG SWI+V NKVH+F+VDD +HP+A  +Y+ +E L
Sbjct: 1413 YAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDL 1472

Query: 691  VLEMRKLG-YVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRI 749
            +  +R+ G YVPDT F L D+E ++KE AL  HSEKLA+AFGL+  P  AT+RV+KNLR+
Sbjct: 1473 MKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRV 1532

Query: 750  CGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            CGDCH+A K +SK+  REIV+RD  RFHHFR+G CSCGDYW
Sbjct: 1533 CGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  149 bits (377), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 147/637 (23%), Positives = 253/637 (39%), Gaps = 148/637 (23%)

Query: 33   LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
            L +  HA +++SG  P  ++ N LI +Y K   L  AR +FD+    D+V   +++AAY+
Sbjct: 629  LGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYA 688

Query: 93   ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                             +  D+ + N +         G     L R+          F+ 
Sbjct: 689  -----------------QFADSSYENVL--------EGFRLFGLLREF--------GFSI 715

Query: 153  TSVLSALALIVEEEKQCMQMHCTV----VKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
            T +  A  L +      +Q+  TV    VK G  L   V  AL+++Y K           
Sbjct: 716  TRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCK---------YG 766

Query: 209  LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREF-------------------LD 249
            L+G AR +FD+MPERD + W  M+  YV+N + D A  F                   + 
Sbjct: 767  LVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIG 826

Query: 250  GMSENVG--------------------------VAWNALISGYVHREL---------KML 274
            G++ +V                            AWN  ++ ++H             +L
Sbjct: 827  GVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLL 886

Query: 275  MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
               I  D  T   ++SA   +    LG+Q+HA ++++   P     +PV+N+L+ +Y K 
Sbjct: 887  RSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPV----VPVSNSLMNMYSKA 942

Query: 335  GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
            G V  A   F   PE DL+SWN ++S+Y                               A
Sbjct: 943  GVVYAAEKTFINSPELDLISWNTMISSY-------------------------------A 971

Query: 395  QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN---GRQLHAQLVHSGYDS 451
            QN    E +  F  +  +G KP  +  A  + +C+     E    G Q+H   +  G  +
Sbjct: 972  QNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIIN 1031

Query: 452  SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
                  ALI +Y++ G ++ A  + +   + D  SWNA++    +     +A+E +  M 
Sbjct: 1032 DSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMH 1091

Query: 512  KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH----YARFIDLLCR 567
            + GI  D IT  T + A      +K+G++        Y I  G ++     +  +D+  +
Sbjct: 1092 EMGIPIDEITLATAIKASGCLINLKQGKQI-----QAYAIKLGFNNDLWVSSGVLDMYIK 1146

Query: 568  AGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
             G    A ++   +  +P    W  +++G   +G+ D
Sbjct: 1147 CGDMPNALELFGEIS-RPDEVAWTTMISGYIENGDED 1182



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 150/658 (22%), Positives = 255/658 (38%), Gaps = 173/658 (26%)

Query: 33   LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
            ++ +VH + +  GF+    +   L++IYCK   +  AR LFD++P+              
Sbjct: 735  VSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPE-------------- 780

Query: 93   ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                               RD V +N M+ AY  NS    A+  F    R    PD    
Sbjct: 781  -------------------RDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNL 821

Query: 153  TSVLSALALIVEEEKQ---------CMQM--------------------HCTVVKSGTGL 183
              V+  +   V   ++          M+M                    H   + +    
Sbjct: 822  HCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDC 881

Query: 184  FTSVLNALI---------------------------SVYVKCVSSPFVS-SRSLMG---- 211
            F ++L + I                           ++ +K   +P V  S SLM     
Sbjct: 882  FKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSK 941

Query: 212  -----AARRVFDEMPERDELSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVAWNALISG 265
                 AA + F   PE D +SW TM++ Y +N+  ++A   F D                
Sbjct: 942  AGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRD---------------- 985

Query: 266  YVHRELKMLMLRIQLDEFTYTSVISACANSG---LFRLGKQVHAYLLRTEAKPTPEFSLP 322
                   +L   ++ D+FT  SV+ AC+       F LG QVH Y ++        F   
Sbjct: 986  -------LLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKC-GIINDSF--- 1034

Query: 323  VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
            V+ AL+ LY K GK++EA  + +   + DL SWNAI+  Y+                   
Sbjct: 1035 VSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYI------------------- 1075

Query: 383  LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
                        ++    + L+ FS M   G    +   A AI +   L  L+ G+Q+ A
Sbjct: 1076 ------------KSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQA 1123

Query: 443  QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
              +  G+++ L   + ++ MY +CG +  A  +F  +   D V+W  MI+   ++G+   
Sbjct: 1124 YAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDH 1183

Query: 503  AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR-YFETMHGPYGIPPGEDHY--A 559
            A+ +Y  M   G+ PD  TF T++ A +    +++G++ +   +   Y +    DH+   
Sbjct: 1184 ALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSL----DHFVGT 1239

Query: 560  RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
              +D+ C+ G   +A  V   +  +     W A+L G   HG++D     A  LF+ M
Sbjct: 1240 SLVDMYCKCGSVQDAYRVFRKMDVR-KVVFWNAMLLGLAQHGHVD----EALNLFRTM 1292



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 131/491 (26%), Positives = 208/491 (42%), Gaps = 92/491 (18%)

Query: 160  ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDE 219
            A+ + + K   + H  +V SG      + N LI++Y KC S         + +AR+VFD+
Sbjct: 621  AIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGS---------LCSARQVFDK 671

Query: 220  MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV--GVAWNALISGYVHRELKMLMLR 277
              +RD ++W +++  Y          +F D   ENV  G     L+     RE    + R
Sbjct: 672  SSDRDLVTWNSILAAYA---------QFADSSYENVLEGFRLFGLL-----REFGFSITR 717

Query: 278  IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
            +     T   ++  C  SG  ++ + VH Y +    K   E  L V+ ALV +Y K G V
Sbjct: 718  L-----TLAPLLKLCLLSGFVQVSETVHGYAV----KIGFELDLFVSGALVNIYCKYGLV 768

Query: 338  NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM------------------- 378
             +AR +F++MPERD V WN +L AYV     DEA   F A                    
Sbjct: 769  GQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGGV 828

Query: 379  -------RER-------------------NLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
                   R+R                   N+ +W   ++     G     +  F  +   
Sbjct: 829  NSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRS 888

Query: 413  GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
                        +++  G   L+ G Q+HA ++ S +   +   N+L+ MY++ GVV AA
Sbjct: 889  TIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAA 948

Query: 473  NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
               F   P +D +SWN MI++  Q+     AI  +  +L++G+ PD+ T  +VL AC+  
Sbjct: 949  EKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG 1008

Query: 533  GLVKEGRRYF---ETMHGPYGIPPG--EDHYAR--FIDLLCRAGKFSEAKDVIDSLPFKP 585
                EG  YF     +H  Y I  G   D +     IDL  + GK  EA+ ++    +  
Sbjct: 1009 ---DEG-EYFTLGSQVH-VYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHG-KYDF 1062

Query: 586  SAPIWEALLAG 596
                W A++ G
Sbjct: 1063 DLASWNAIMFG 1073


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/590 (40%), Positives = 360/590 (61%), Gaps = 48/590 (8%)

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           AR++FD+MPE + +SW  +++GYV+N  +  AR+  D M E   V+W A+I GYV   L 
Sbjct: 13  ARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGL- 71

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                I+  E  +            +R+                PE ++     ++    
Sbjct: 72  -----IEEAELLF------------WRM----------------PERNVVSWTVMLGGLI 98

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           + G+V+EAR +F+ MP +D+V+   ++    S G + EA+ +F+ M +RN+++WT MISG
Sbjct: 99  EDGRVDEARQLFDMMPVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISG 158

Query: 393 -------------LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
                          + G+  E L LFS M+ EG +P   +    ++ C  L +L++GRQ
Sbjct: 159 EKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQ 218

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           +H+QLV S +D  +   + LITMY +CG +  A  VF+   + D V WN++IA   QHG 
Sbjct: 219 VHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGF 278

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA 559
           G +A+E++  M    I PD ITF+ VLSAC++ G VKEG   FE+M   Y + P  +HYA
Sbjct: 279 GEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYA 338

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
             +DLL RAGK +EA ++I+++P +  A +W ALL  CR H N+DL   AA++L QL P+
Sbjct: 339 CMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPN 398

Query: 620 HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFL-VDDTAHP 678
           +AG Y+LLSN+Y++  RW D   +RK MR + ++K PGCSWIEVD KVH+F     T+HP
Sbjct: 399 NAGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSWIEVDKKVHIFSGGGSTSHP 458

Query: 679 EAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGG 738
           E + + K L +L   +R+ GY PD  FV+HD++ ++K ++L  HSEKLAVA+GL+K+P G
Sbjct: 459 EHEMILKKLGKLGALLREAGYCPDGSFVMHDVDEEEKVHSLRDHSEKLAVAYGLLKVPEG 518

Query: 739 ATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788
             +RV+KNLR+CGD H+  K +++V GREI++RD  RFHHF+DG CSC D
Sbjct: 519 MPIRVMKNLRVCGDSHSTIKLIAQVTGREIILRDTNRFHHFKDGLCSCSD 568



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 112/447 (25%), Positives = 201/447 (44%), Gaps = 94/447 (21%)

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           AR LFD++P+ + ++   L++ Y  +  +  AR++F+K P   R+ V + AMI  Y    
Sbjct: 13  ARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMP--ERNVVSWTAMIRGYVQEG 70

Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALAL--IVEEEKQCMQMHCT--VVKSGTGLF 184
               A  LF  M   +V     ++T +L  L     V+E +Q   M     VV S     
Sbjct: 71  LIEEAELLFWRMPERNV----VSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVAS----- 121

Query: 185 TSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAA 244
           T++++ L      C     +        AR +FDEMP+R+ ++WT+M++G          
Sbjct: 122 TNMIDGL------CSEGRLIE-------AREIFDEMPQRNVVAWTSMISG---------- 158

Query: 245 REFLDGMSENVGVAWNALISGYVHRELKM-------LMLR--IQLDEFTYTSVISACANS 295
            E  DG        W+ +I  Y  +  ++       LM R  ++    +  SV+S C + 
Sbjct: 159 -EKDDG-------TWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSL 210

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
                G+QVH+ L+R++     +  + V++ L+T+Y KCG +  A+ +F++   +D+V W
Sbjct: 211 ASLDHGRQVHSQLVRSQF----DIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMW 266

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           N+I++ Y                               AQ+G+GE+ L++F  M      
Sbjct: 267 NSIIAGY-------------------------------AQHGFGEKALEVFHDMFSSSIA 295

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY--DSSLSAGNALITMYARCGVV-EAA 472
           P +  F G +++C+  G ++ G ++   +  S Y  D        ++ +  R G + EA 
Sbjct: 296 PDEITFIGVLSACSYTGKVKEGLEIFESM-KSKYQVDPKTEHYACMVDLLGRAGKLNEAM 354

Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGN 499
           N + N     D++ W A++ A   H N
Sbjct: 355 NLIENMPVEADAIVWGALLGACRTHKN 381



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 89/234 (38%), Gaps = 59/234 (25%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R VH+ ++ S F    ++ + LI +Y K   LV A+ +FD     DI            
Sbjct: 216 GRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDI------------ 263

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                                V +N++I  Y+ +  G  A+E+F DM    + PD  TF 
Sbjct: 264 ---------------------VMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFI 302

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
            VLSA +            +   VK G  +F S+ +      V   +  +     L+G A
Sbjct: 303 GVLSACS------------YTGKVKEGLEIFESMKS---KYQVDPKTEHYACMVDLLGRA 347

Query: 214 RR------VFDEMP-ERDELSWTTMMTGYVKNDYLD----AAREFLDGMSENVG 256
            +      + + MP E D + W  ++     +  LD    AA++ L     N G
Sbjct: 348 GKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNNAG 401


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 265/688 (38%), Positives = 398/688 (57%), Gaps = 45/688 (6%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           R VHA ++ + F     I NRLID+Y K   L  AR LFD +PQ +     +LI+  + S
Sbjct: 35  RLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKS 94

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
             +  A  +F   P    D   +N+M++ ++ +     ++E F  M R+D   + ++F S
Sbjct: 95  GFLDEAARLFGSMPEP--DQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGS 152

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
            LSA A ++ +     Q+H  V KS       + +ALI +Y KC S         +  A 
Sbjct: 153 ALSACAGLM-DLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGS---------VACAE 202

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
            VF  M ER+ ++W +++T Y +N     A E                        ++M+
Sbjct: 203 EVFSGMIERNLVTWNSLITCYEQNGPASEALEVF----------------------VRMM 240

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
              ++ DE T  SV+SACA+    + G Q+HA +++T         L + NALV +Y KC
Sbjct: 241 DSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRD---DLVLGNALVDMYAKC 297

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
            KVNEAR +F++M  R++VS  +++S Y  A  +  A+ +F  M +RN++SW  +I+G  
Sbjct: 298 SKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYT 357

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV------HSG 448
           QNG  EE L+LF  ++ E   P  Y F   +++CA L  L  GRQ H  ++       SG
Sbjct: 358 QNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSG 417

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
            +S +  GN+LI MY +CG +E  + VF  M   D VSWNA+I    Q+G GA A++++ 
Sbjct: 418 AESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFR 477

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568
           +ML  G  PD +T + VL AC+HAGLV+EGR YF +M   +G+ P +DHY   +DLL RA
Sbjct: 478 KMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSME-EHGLIPLKDHYTCMVDLLGRA 536

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628
           G  +EAK++I+++P  P A +W +LLA C++HGNI++G  AAE+L ++ P ++G YVLLS
Sbjct: 537 GCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLS 596

Query: 629 NMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLE 688
           NMYA LGRW D  RVRKLMR +GV K+PGCSWIEV+++VHVFLV D +HP  + +Y  L+
Sbjct: 597 NMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLK 656

Query: 689 QLVLEMRKLGYVPDTK-FVLHDMESDQK 715
            L  +M+++GY+PD   F  +D +S  +
Sbjct: 657 MLTEQMKRVGYIPDANDFEAYDEQSKSE 684



 Score =  193 bits (490), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 144/514 (28%), Positives = 230/514 (44%), Gaps = 87/514 (16%)

Query: 12  LANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYART 71
           L N Y+    L      +  ++   VHA +  S +    ++ + LID+Y K   +  A  
Sbjct: 144 LLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEE 203

Query: 72  LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           +F  + + ++V                                  +N++IT Y  N    
Sbjct: 204 VFSGMIERNLVT---------------------------------WNSLITCYEQNGPAS 230

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL-NA 190
            A+E+F  M    ++PD  T  SV+SA A +    K+ +Q+H  VVK+       VL NA
Sbjct: 231 EALEVFVRMMDSGLEPDEVTLASVVSACASLC-ALKEGLQIHARVVKTNKFRDDLVLGNA 289

Query: 191 LISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDG 250
           L+ +Y KC         S +  ARRVFD M  R+ +S T+M++GY +   + AAR     
Sbjct: 290 LVDMYAKC---------SKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSK 340

Query: 251 MSENVGVAWNALISGYVH---RELKMLMLRIQLDE------FTYTSVISACANSGLFRLG 301
           M++   V+WNALI+GY      E  + + R+   E      +T+ +++SACAN     LG
Sbjct: 341 MTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLG 400

Query: 302 KQVHAYLLRT--EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAIL 359
           +Q H ++L+   E +   E  + V N+L+ +Y KCG + +   +F +M ERD VSWNAI+
Sbjct: 401 RQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAII 460

Query: 360 SAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY 419
             Y                               AQNGYG E L++F +M + G KP   
Sbjct: 461 VGY-------------------------------AQNGYGAEALQIFRKMLVCGEKPDHV 489

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
              G + +C+  G +E GR     +   G          ++ +  R G +  A  +   M
Sbjct: 490 TMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAM 549

Query: 480 P-NVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           P N D+V W +++AA   HGN        E++L+
Sbjct: 550 PVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLE 583



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 113/404 (27%), Positives = 194/404 (48%), Gaps = 62/404 (15%)

Query: 11  TLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHII--NRLIDIYCKSLKLVY 68
           TLA+  ++   LC  +  +       +HA ++ +  K R+ ++  N L+D+Y K  K+  
Sbjct: 250 TLASVVSACASLCALKEGL------QIHARVVKTN-KFRDDLVLGNALVDMYAKCSKVNE 302

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           AR +FD +   ++V+ T++++ Y+ + +VK AR MF+K  +  R+ V +NA+I  Y+ N 
Sbjct: 303 ARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSK--MTQRNVVSWNALIAGYTQNG 360

Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSG----TGLF 184
               A+ LFR ++R+ + P ++TF ++LSA A + +      Q H  V+K G    +G  
Sbjct: 361 ENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLG-RQAHTHVLKQGFEFQSGAE 419

Query: 185 TSVL--NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLD 242
           + +   N+LI +Y+KC S         +    RVF++M ERD +SW  ++ GY +N Y  
Sbjct: 420 SDIFVGNSLIDMYMKCGS---------IEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGA 470

Query: 243 AAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGK 302
            A +                         KML+   + D  T   V+ AC+++GL   G+
Sbjct: 471 EALQIFR----------------------KMLVCGEKPDHVTMIGVLCACSHAGLVEEGR 508

Query: 303 QVHAYLLRTEAKPTPEFSLPVNN---ALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAI 358
               Y    E        +P+ +    +V L  + G +NEA+++   MP   D V W ++
Sbjct: 509 H---YFFSMEEHGL----IPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSL 561

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG 402
           L+A    G I+  K   E + E +   W      L  N Y E G
Sbjct: 562 LAACKVHGNIEMGKHAAEKLLEID--PWNSGPYVLLSNMYAELG 603



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 65/133 (48%), Gaps = 4/133 (3%)

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473
           + P    FA  + SC    +    R +HA+++ + +   +   N LI +Y +C  ++ A 
Sbjct: 11  YLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDAR 70

Query: 474 CVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533
            +F+ MP  ++ +WN++I+ L + G    A  L+  M +    PD+ ++ +++S      
Sbjct: 71  KLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPE----PDQCSWNSMVSGFAQHD 126

Query: 534 LVKEGRRYFETMH 546
             +E   YF  MH
Sbjct: 127 RFEESLEYFVKMH 139


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 277/761 (36%), Positives = 401/761 (52%), Gaps = 102/761 (13%)

Query: 33   LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
            L   +HA +I S F P   + N L+++Y K+  +  A   F   P+ D+++         
Sbjct: 912  LGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLIS--------- 962

Query: 93   ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                    +N MI++Y+ N+    AI  FRD+ RD +KPD FT 
Sbjct: 963  ------------------------WNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTL 998

Query: 153  TSVLSALALIVEEEKQCM--QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
             SVL A +   E E   +  Q+H   +K G    + V  ALI +Y K            M
Sbjct: 999  ASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKG---------GKM 1049

Query: 211  GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
              A  +     + D  SW  +M GY+K++    A E    M E                 
Sbjct: 1050 DEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHE----------------- 1092

Query: 271  LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
                 + I +DE T  + I A       + GKQ+ AY ++          L V++ ++ +
Sbjct: 1093 -----MGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNN----DLWVSSGVLDM 1143

Query: 331  YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
            Y KCG +  A ++F ++   D V+W  ++S Y+                           
Sbjct: 1144 YIKCGDMPNALELFGEISRPDEVAWTTMISGYI--------------------------- 1176

Query: 391  SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
                +NG  +  L ++  MR+ G +P +Y FA  I + + L ALE G+Q+HA +V   Y 
Sbjct: 1177 ----ENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYS 1232

Query: 451  SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
                 G +L+ MY +CG V+ A  VF  M     V WNAM+  L QHG+   A+ L+  M
Sbjct: 1233 LDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTM 1292

Query: 511  LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
               GI PD++TF+ VLSAC+H+GL  E  +YF+ M   YGI P  +HY+  +D L RAG+
Sbjct: 1293 QSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGR 1352

Query: 571  FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630
              EA++VI S+PFK SA ++ ALL  CR  G+ +   + A++L  L P  +  YVLLSN+
Sbjct: 1353 IQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNI 1412

Query: 631  YANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQL 690
            YA   +WDD    R +M+ + VKK+PG SWI+V NKVH+F+VDD +HP+A  +Y+ +E L
Sbjct: 1413 YAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDL 1472

Query: 691  VLEMRKLG-YVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRI 749
            +  +R+ G YVPDT F L D+E ++KE AL  HSEKLA+AFGL+  P  AT+RV+KNLR+
Sbjct: 1473 MKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRV 1532

Query: 750  CGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            CGDCH+A K +SK+  REIV+RD  RFHHFR+G CSCGDYW
Sbjct: 1533 CGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  149 bits (377), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 147/637 (23%), Positives = 253/637 (39%), Gaps = 148/637 (23%)

Query: 33   LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
            L +  HA +++SG  P  ++ N LI +Y K   L  AR +FD+    D+V   +++AAY+
Sbjct: 629  LGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYA 688

Query: 93   ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                             +  D+ + N +         G     L R+          F+ 
Sbjct: 689  -----------------QFADSSYENVL--------EGFRLFGLLREF--------GFSI 715

Query: 153  TSVLSALALIVEEEKQCMQMHCTV----VKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
            T +  A  L +      +Q+  TV    VK G  L   V  AL+++Y K           
Sbjct: 716  TRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCK---------YG 766

Query: 209  LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREF-------------------LD 249
            L+G AR +FD+MPERD + W  M+  YV+N + D A  F                   + 
Sbjct: 767  LVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVIG 826

Query: 250  GMSENVG--------------------------VAWNALISGYVHREL---------KML 274
            G++ +V                            AWN  ++ ++H             +L
Sbjct: 827  GVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLL 886

Query: 275  MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
               I  D  T   ++SA   +    LG+Q+HA ++++   P     +PV+N+L+ +Y K 
Sbjct: 887  RSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPV----VPVSNSLMNMYSKA 942

Query: 335  GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
            G V  A   F   PE DL+SWN ++S+Y                               A
Sbjct: 943  GVVYAAEKTFINSPELDLISWNTMISSY-------------------------------A 971

Query: 395  QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN---GRQLHAQLVHSGYDS 451
            QN    E +  F  +  +G KP  +  A  + +C+     E    G Q+H   +  G  +
Sbjct: 972  QNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIIN 1031

Query: 452  SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
                  ALI +Y++ G ++ A  + +   + D  SWNA++    +     +A+E +  M 
Sbjct: 1032 DSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMH 1091

Query: 512  KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH----YARFIDLLCR 567
            + GI  D IT  T + A      +K+G++        Y I  G ++     +  +D+  +
Sbjct: 1092 EMGIPIDEITLATAIKASGCLINLKQGKQI-----QAYAIKLGFNNDLWVSSGVLDMYIK 1146

Query: 568  AGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
             G    A ++   +  +P    W  +++G   +G+ D
Sbjct: 1147 CGDMPNALELFGEIS-RPDEVAWTTMISGYIENGDED 1182



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 150/658 (22%), Positives = 255/658 (38%), Gaps = 173/658 (26%)

Query: 33   LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
            ++ +VH + +  GF+    +   L++IYCK   +  AR LFD++P+              
Sbjct: 735  VSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPE-------------- 780

Query: 93   ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                               RD V +N M+ AY  NS    A+  F    R    PD    
Sbjct: 781  -------------------RDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNL 821

Query: 153  TSVLSALALIVEEEKQ---------CMQM--------------------HCTVVKSGTGL 183
              V+  +   V   ++          M+M                    H   + +    
Sbjct: 822  HCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDC 881

Query: 184  FTSVLNALI---------------------------SVYVKCVSSPFVS-SRSLMG---- 211
            F ++L + I                           ++ +K   +P V  S SLM     
Sbjct: 882  FKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSK 941

Query: 212  -----AARRVFDEMPERDELSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVAWNALISG 265
                 AA + F   PE D +SW TM++ Y +N+  ++A   F D                
Sbjct: 942  AGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRD---------------- 985

Query: 266  YVHRELKMLMLRIQLDEFTYTSVISACANSG---LFRLGKQVHAYLLRTEAKPTPEFSLP 322
                   +L   ++ D+FT  SV+ AC+       F LG QVH Y ++        F   
Sbjct: 986  -------LLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKC-GIINDSF--- 1034

Query: 323  VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
            V+ AL+ LY K GK++EA  + +   + DL SWNAI+  Y+                   
Sbjct: 1035 VSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYI------------------- 1075

Query: 383  LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
                        ++    + L+ FS M   G    +   A AI +   L  L+ G+Q+ A
Sbjct: 1076 ------------KSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQA 1123

Query: 443  QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
              +  G+++ L   + ++ MY +CG +  A  +F  +   D V+W  MI+   ++G+   
Sbjct: 1124 YAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDH 1183

Query: 503  AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR-YFETMHGPYGIPPGEDHY--A 559
            A+ +Y  M   G+ PD  TF T++ A +    +++G++ +   +   Y +    DH+   
Sbjct: 1184 ALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSL----DHFVGT 1239

Query: 560  RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
              +D+ C+ G   +A  V   +  +     W A+L G   HG++D     A  LF+ M
Sbjct: 1240 SLVDMYCKCGSVQDAYRVFRKMDVR-KVVFWNAMLLGLAQHGHVD----EALNLFRTM 1292



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 131/491 (26%), Positives = 208/491 (42%), Gaps = 92/491 (18%)

Query: 160  ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDE 219
            A+ + + K   + H  +V SG      + N LI++Y KC S         + +AR+VFD+
Sbjct: 621  AIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGS---------LCSARQVFDK 671

Query: 220  MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV--GVAWNALISGYVHRELKMLMLR 277
              +RD ++W +++  Y          +F D   ENV  G     L+     RE    + R
Sbjct: 672  SSDRDLVTWNSILAAYA---------QFADSSYENVLEGFRLFGLL-----REFGFSITR 717

Query: 278  IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
            +     T   ++  C  SG  ++ + VH Y +    K   E  L V+ ALV +Y K G V
Sbjct: 718  L-----TLAPLLKLCLLSGFVQVSETVHGYAV----KIGFELDLFVSGALVNIYCKYGLV 768

Query: 338  NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM------------------- 378
             +AR +F++MPERD V WN +L AYV     DEA   F A                    
Sbjct: 769  GQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVIGGV 828

Query: 379  -------RER-------------------NLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
                   R+R                   N+ +W   ++     G     +  F  +   
Sbjct: 829  NSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRS 888

Query: 413  GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
                        +++  G   L+ G Q+HA ++ S +   +   N+L+ MY++ GVV AA
Sbjct: 889  TIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAA 948

Query: 473  NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
               F   P +D +SWN MI++  Q+     AI  +  +L++G+ PD+ T  +VL AC+  
Sbjct: 949  EKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG 1008

Query: 533  GLVKEGRRYF---ETMHGPYGIPPG--EDHYAR--FIDLLCRAGKFSEAKDVIDSLPFKP 585
                EG  YF     +H  Y I  G   D +     IDL  + GK  EA+ ++    +  
Sbjct: 1009 ---DEG-EYFTLGSQVH-VYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHG-KYDF 1062

Query: 586  SAPIWEALLAG 596
                W A++ G
Sbjct: 1063 DLASWNAIMFG 1073


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 278/778 (35%), Positives = 430/778 (55%), Gaps = 95/778 (12%)

Query: 36  SVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASD 95
           SVHA + +SGF+    + N L+ +Y +      AR +FDE+ +  +              
Sbjct: 147 SVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGV-------------- 192

Query: 96  NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPDNFTFTS 154
                            D V +N+++ AY    +   A+++F  M  D  ++PD  +  +
Sbjct: 193 ----------------GDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVN 236

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL--NALISVYVKCVSSPFVSSRSLMGA 212
           VL A A  V    +  Q+H   ++SG  LF  V   NA++ +Y KC          +M  
Sbjct: 237 VLPACA-SVGAWSRGKQVHGYALRSG--LFEDVFVGNAVVDMYAKC---------GMMEE 284

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE-----NVGVAWNALISGYV 267
           A +VF+ M  +D +SW  M+TGY +    D A    + + E     NV V W+A+I+GY 
Sbjct: 285 ANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNV-VTWSAVIAGYA 343

Query: 268 HREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR---TEAKP 315
            R L         +M +   + +  T  S++S CA +G    GK+ H + ++      + 
Sbjct: 344 QRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDEN 403

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
            P   L V NAL+ +Y KC     AR +F+ +P +D                        
Sbjct: 404 DPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKD------------------------ 439

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RLEGF-KPCDYAFAGAITSCAGLGA 433
                R++++WTV+I G AQ+G   E L+LFSQM + + F  P  +  + A+ +CA LGA
Sbjct: 440 -----RSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGA 494

Query: 434 LENGRQLHAQLVHSGYDSS-LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
           L  GRQ+HA ++ + ++S+ L   N LI MY++ G V+AA  VF+ M   + VSW +++ 
Sbjct: 495 LRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMT 554

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552
             G HG G  A++++ +M K G++PD +TF+ VL AC+H+G+V +G  YF  M+  +G+ 
Sbjct: 555 GYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVV 614

Query: 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
           PG +HYA  +DLL RAG+  EA ++I  +P KP+  +W ALL+ CR++ N++LG  AA Q
Sbjct: 615 PGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQ 674

Query: 613 LFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLV 672
           L +L   + G+Y LLSN+YAN   W D AR+R LM++ G+KK PGCSW++       F  
Sbjct: 675 LLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFA 734

Query: 673 DDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGL 732
            D +HP +Q +Y  L  L+  ++ LGYVPD +F LHD++ ++K   LS HSEKLA+A+G+
Sbjct: 735 GDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGI 794

Query: 733 MKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +    GA +R+ KNLR CGDCH+AF ++S ++  EI+VRD  RFHHF++G CSC  YW
Sbjct: 795 LTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 852



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 167/575 (29%), Positives = 273/575 (47%), Gaps = 73/575 (12%)

Query: 61  CKSL---KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFY 117
           CKSL   +L++ + L   +P       T +I+ Y   ++   A  +  +         ++
Sbjct: 39  CKSLASAELIHQQLLVQGLPHDP----THIISMYLTFNSPAKALSVLRRLHPSSHTVFWW 94

Query: 118 NAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC-MQMHCTV 176
           N +I    H       ++L+R M+R   +PD++TF  VL A   I     +C   +H  V
Sbjct: 95  NQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEI--PSFRCGASVHAVV 152

Query: 177 VKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER---DELSWTTMMT 233
             SG      V N L+S+Y +C              AR+VFDEM ER   D +SW +++ 
Sbjct: 153 FASGFEWNVFVGNGLVSMYGRC---------GAWENARQVFDEMRERGVGDLVSWNSIVA 203

Query: 234 GYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACA 293
            Y++      A +  + M+E++G                     I+ D  +  +V+ ACA
Sbjct: 204 AYMQGGDSIRAMKMFERMTEDLG---------------------IRPDAVSLVNVLPACA 242

Query: 294 NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV 353
           + G +  GKQVH Y LR+         + V NA+V +Y KCG + EA  +F +M  +D+V
Sbjct: 243 SVGAWSRGKQVHGYALRSGLFE----DVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVV 298

Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRER----NLLSWTVMISGLAQNGYGEEGLKLFSQM 409
           SWNA+++ Y   G  D+A  LFE +RE     N+++W+ +I+G AQ G G E L +F QM
Sbjct: 299 SWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQM 358

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV-------HSGYDSSLSAGNALITM 462
           RL G +P        ++ CA  G L +G++ H   +        +     L   NALI M
Sbjct: 359 RLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDM 418

Query: 463 YARCGVVEAANCVFNTMPNVDS--VSWNAMIAALGQHGNGARAIELYEQMLKEG--ILPD 518
           Y++C   +AA  +F+ +P  D   V+W  +I    QHG    A+EL+ QML+    ++P+
Sbjct: 419 YSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPN 478

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF-----IDLLCRAGKFSE 573
             T    L AC   G ++ GR+    +H  Y +    +    F     ID+  ++G    
Sbjct: 479 AFTISCALMACARLGALRFGRQ----IHA-YVLRNRFESAMLFVANCLIDMYSKSGDVDA 533

Query: 574 AKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
           A+ V D++  + +   W +L+ G  +HG  +  +Q
Sbjct: 534 ARVVFDNM-HQRNGVSWTSLMTGYGMHGRGEEALQ 567



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/425 (25%), Positives = 193/425 (45%), Gaps = 49/425 (11%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           S  + VH + + SG      + N ++D+Y K   +  A  +F+ +   D+V+   ++  Y
Sbjct: 248 SRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGY 307

Query: 92  SASDNVKLAREMFNKTPLKM--RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
           S       A  +F K   +    + V ++A+I  Y+    G  A+++FR MR    +P+ 
Sbjct: 308 SQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNV 367

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVK-------SGTGLFTSVLNALISVYVKCVSSP 202
            T  S+LS  AL         + HC  +K       +  G    V+NALI +Y KC S  
Sbjct: 368 VTLVSLLSGCAL-AGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPK 426

Query: 203 FVSSRSLMGAARRVFDEMPERDE--LSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWN 260
                    AAR +FD +P +D   ++WT ++ G  ++   + A E    M +       
Sbjct: 427 ---------AARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNF--- 474

Query: 261 ALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
                            +  + FT +  + ACA  G  R G+Q+HAY+LR   +    F 
Sbjct: 475 -----------------VMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLF- 516

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
             V N L+ +Y K G V+ AR +F+ M +R+ VSW ++++ Y   G  +EA  +F  M++
Sbjct: 517 --VANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQK 574

Query: 381 RNL----LSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSCAGLGALE 435
             L    +++ V++   + +G  ++G+  F+ M  + G  P    +A  +   +  G L+
Sbjct: 575 VGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLD 634

Query: 436 NGRQL 440
              +L
Sbjct: 635 EAMEL 639



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 146/296 (49%), Gaps = 17/296 (5%)

Query: 329 TLYWKCGKVNEARDIFNQMPERDLV-SWNAILSAYVSAGLIDEAKSLFEAMR--ERNLLS 385
           TL+ +C  +  A  I  Q+  + L      I+S Y++     +A S+   +      +  
Sbjct: 34  TLFHQCKSLASAELIHQQLLVQGLPHDPTHIISMYLTFNSPAKALSVLRRLHPSSHTVFW 93

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
           W  +I      G+ E+ L+L+ +M+  G++P  Y F   + +C  + +   G  +HA + 
Sbjct: 94  WNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVF 153

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV---DSVSWNAMIAALGQHGNGAR 502
            SG++ ++  GN L++MY RCG  E A  VF+ M      D VSWN+++AA  Q G+  R
Sbjct: 154 ASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIR 213

Query: 503 AIELYEQMLKE-GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG--EDHYA 559
           A++++E+M ++ GI PD ++ + VL AC   G    G++    +HG Y +  G  ED + 
Sbjct: 214 AMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQ----VHG-YALRSGLFEDVFV 268

Query: 560 --RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
               +D+  + G   EA  V + +  K     W A++ G    G  D  +   E++
Sbjct: 269 GNAVVDMYAKCGMMEEANKVFERMKVKDVVS-WNAMVTGYSQIGRFDDALGLFEKI 323


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 273/759 (35%), Positives = 394/759 (51%), Gaps = 108/759 (14%)

Query: 36  SVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASD 95
           S+H   I  G      + N L+D YCK   L  AR +F E+                   
Sbjct: 156 SLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHD----------------- 198

Query: 96  NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV 155
                           +D V YNAM+   S       A++LF  MRR  +   +FTF+S+
Sbjct: 199 ----------------KDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSI 242

Query: 156 LSALA----LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           L+  A    L++       Q+H  V++S + L   V N+L+  Y KC           + 
Sbjct: 243 LTVAAGMAHLLLGH-----QVHALVLRSTSVLNVFVNNSLLDFYSKC---------DCLD 288

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
             RR+FDEMPERD +S+  ++  Y                      AWN   +  +    
Sbjct: 289 DMRRLFDEMPERDNVSYNVIIAAY----------------------AWNQCAATVLRLFR 326

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
           +M  L        Y +++S   +     +GKQ+HA L                       
Sbjct: 327 EMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQL----------------------- 363

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
                      +   +   DL+  NA++  Y   G++D AKS F    E++ +SWT +I+
Sbjct: 364 -----------VLLGLASEDLLG-NALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALIT 411

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
           G  QNG  EE L+LFS MR  G +P    F+  I + + L  +  GRQLH+ L+ SGY S
Sbjct: 412 GYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKS 471

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
           S+ +G+ L+ MYA+CG ++ A   F+ MP  +S+SWNA+I+A   +G    AI+++E ML
Sbjct: 472 SVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGML 531

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571
             G  PD +TFL+VL+AC+H GL  E  +YF  M   Y I P ++HYA  ID L R G F
Sbjct: 532 HCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCF 591

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631
           S+ + ++  +PFK    IW ++L  CRIHGN +L   AA++LF + P  A  YV+LSN+Y
Sbjct: 592 SQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIY 651

Query: 632 ANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLV 691
           A  G+W+DAA V+K+MRDRGV+KE G SW+E+  K++ F  +D   P    +   L++L 
Sbjct: 652 ARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLY 711

Query: 692 LEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICG 751
            EM K GY PD    LH ++ + K  +L  HSE+LA+AF LM  P G  +R++KNL  C 
Sbjct: 712 KEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACL 771

Query: 752 DCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           DCH   K +SK+V R+I+VRD +RFHHF+DG CSCGDYW
Sbjct: 772 DCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810



 Score =  212 bits (539), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 160/581 (27%), Positives = 263/581 (45%), Gaps = 84/581 (14%)

Query: 39  AHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVK 98
           A M+ +GF    + +N  +     S  L  AR +FD++P  +I +   +++AYS+S ++ 
Sbjct: 32  ARMVKTGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLP 91

Query: 99  LAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA 158
            A+ +F  +P   R+   +  M+ A++       A+ LFR M  + V PD  T T+VL+ 
Sbjct: 92  AAQHLFLSSP--HRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNL 149

Query: 159 LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFD 218
               V        +H   +K G      V N L+  Y K           L+ AARRVF 
Sbjct: 150 PGCTVPS------LHPFAIKFGLDTHVFVCNTLLDAYCK---------HGLLAAARRVFL 194

Query: 219 EMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRI 278
           EM ++D +++  MM G  K      A +    M            +G            I
Sbjct: 195 EMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRR----------AG------------I 232

Query: 279 QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
               FT++S+++  A      LG QVHA +LR+    T   ++ VNN+L+  Y KC  ++
Sbjct: 233 PATHFTFSSILTVAAGMAHLLLGHQVHALVLRS----TSVLNVFVNNSLLDFYSKCDCLD 288

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGY 398
           + R +F++MPERD VS+N I++AY                               A N  
Sbjct: 289 DMRRLFDEMPERDNVSYNVIIAAY-------------------------------AWNQC 317

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
               L+LF +M+  GF      +A  ++    L  +  G+Q+HAQLV  G  S    GNA
Sbjct: 318 AATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNA 377

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           LI MY++CG+++AA   F+      ++SW A+I    Q+G    A++L+  M + G+ PD
Sbjct: 378 LIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPD 437

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY----ARFIDLLCRAGKFSEA 574
           R TF +++ A +   ++  GR+    +H  Y I  G        +  +D+  + G   EA
Sbjct: 438 RATFSSIIKASSSLAMIGLGRQ----LHS-YLIRSGYKSSVFSGSVLVDMYAKCGCLDEA 492

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
               D +P + S   W A+++    +G     I+  E +  
Sbjct: 493 LRTFDEMPERNSIS-WNAVISAYAHYGEAKNAIKMFEGMLH 532



 Score = 48.1 bits (113), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 17/168 (10%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R +H+++I SG+K      + L+D+Y K   L  A   FDE+P+ + ++   +I+AY+
Sbjct: 456 LGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYA 515

Query: 93  ASDNVKLAREMFNK------TPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DV 145
                K A +MF         P    D+V + +++ A SHN      ++ F  M+    +
Sbjct: 516 HYGEAKNAIKMFEGMLHCGFNP----DSVTFLSVLAACSHNGLADECMKYFHLMKHQYSI 571

Query: 146 KPDNFTFTSVLSALALI---VEEEKQCMQMHCTVVKSGTGLFTSVLNA 190
            P    +  V+  L  +    + +K  ++M     K+   ++TS+L++
Sbjct: 572 SPWKEHYACVIDTLGRVGCFSQVQKMLVEM---PFKADPIIWTSILHS 616


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 253/619 (40%), Positives = 361/619 (58%), Gaps = 35/619 (5%)

Query: 202 PFVSSRSL--------MGAARRVFDEMP--ERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           PFV+S  L         G AR +FD MP  +R  + W+ ++  +      + A   L+ M
Sbjct: 52  PFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEM 111

Query: 252 SENVGV-----AWNALISGYVHRELKMLMLRIQL-----------DEFTYTSVISACANS 295
             + GV      WN L+SG ++R  +     + L           D    +  +SA  + 
Sbjct: 112 RRDGGVEPNVITWNGLVSG-LNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDV 170

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
           GL  +G+Q+H Y ++   +        V  AL+ +Y KCG+  E   +F++    D+ S 
Sbjct: 171 GLVSVGQQLHGYAVKAGCRADA----CVVTALIDMYGKCGQAAEVVRVFDESSHMDVASC 226

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRER----NLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
           NA+++       + EA  LF+   +R    N++SWT +++   QNG   E ++ F +M+ 
Sbjct: 227 NALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQA 286

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
           +G +P        + + A + AL +GR  H   +  G+   +   +AL+ MYA+CG V+ 
Sbjct: 287 QGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKD 346

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
           A  +F+TM + + VSWNAMI     +G    A+ ++  MLK    PD +TF  +L+AC  
Sbjct: 347 ARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQ 406

Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
           AGL +EGR YF+ MH  YG+ P  +HYA  + LL RAGK  EA D+I  +PF+P A IW 
Sbjct: 407 AGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWG 466

Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
           +LL  CR+HGN+DL   AAE+LF L P +AG YVLLSN+YA+   WD   RVR++M+D G
Sbjct: 467 SLLGSCRVHGNVDLAEVAAEKLFHLEPENAGNYVLLSNIYASKKMWDRVNRVREMMKDVG 526

Query: 652 VKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDME 711
           +KKE GCSWIE+ NKVH+ L  D +HP   A+ + + QL ++MRKLG+VP T FVLHD+E
Sbjct: 527 LKKEKGCSWIEIKNKVHMLLAGDDSHPMMTAIIEKINQLNIQMRKLGFVPSTDFVLHDVE 586

Query: 712 SDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVR 771
             +K+  L+ HSEKLAVA GL+    G T+RV+KNLRICGDCH A KF+S   GREI VR
Sbjct: 587 EQEKDDILAVHSEKLAVALGLISTSPGTTLRVIKNLRICGDCHEAMKFISSFEGREISVR 646

Query: 772 DGKRFHHFRDGKCSCGDYW 790
           D  RFHHF  GKCSCGD+W
Sbjct: 647 DTNRFHHFSGGKCSCGDFW 665



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 118/437 (27%), Positives = 201/437 (45%), Gaps = 42/437 (9%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPD--IVARTTL 87
           T  LAR++HA    SG      + + L+  Y +      AR LFD +P+P   +V  + L
Sbjct: 32  TLPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSAL 91

Query: 88  IAAYSASDNV----KLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD 143
           +AA++A  +     +L  EM     ++  + + +N +++  + +     A+     M  +
Sbjct: 92  VAAHAARGDAEGAWRLLEEMRRDGGVE-PNVITWNGLVSGLNRSGRARDAVVALATMHGE 150

Query: 144 D-VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSP 202
             ++PD    +  LSA+   V       Q+H   VK+G      V+ ALI +Y KC  + 
Sbjct: 151 GLLRPDATGVSCALSAVG-DVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAA 209

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKN----DYLDAAREFLD-GMSENVGV 257
            V          RVFDE    D  S   ++ G  +N    + L   +EF+D G+  NV V
Sbjct: 210 EVV---------RVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNV-V 259

Query: 258 AWNALISGYVH--REL-------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
           +W ++++  V   ++L       +M     + +  T   V+ A AN      G+  H + 
Sbjct: 260 SWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFA 319

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
           LR          + V++ALV +Y KCG+V +AR IF+ M  R++VSWNA++  Y   G  
Sbjct: 320 LRKGFL----HDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEA 375

Query: 369 DEAKSLFEAM----RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAG 423
             A  +F +M    ++ +++++T +++   Q G  EEG   F +M  E G  P    +A 
Sbjct: 376 VNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYAC 435

Query: 424 AITSCAGLGALENGRQL 440
            +T     G L+    L
Sbjct: 436 MVTLLGRAGKLDEAYDL 452



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 150/350 (42%), Gaps = 38/350 (10%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           S+ + +H + + +G +    ++  LID+Y K  +      +FDE    D+ +   LIA  
Sbjct: 174 SVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGL 233

Query: 92  SASDNVKLAREMFNKTPLK--MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
           S +  V  A  +F +   +    + V + +++     N     A+E FR+M+    +P++
Sbjct: 234 SRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNS 293

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
            T   VL A A  V         HC  ++ G      V +AL+ +Y KC           
Sbjct: 294 VTIPCVLPAFA-NVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKC---------GR 343

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +  AR +FD M  R+ +SW  M+ GY                 E V   W        H 
Sbjct: 344 VKDARIIFDTMVSRNVVSWNAMIGGYAM-------------YGEAVNAVW------MFH- 383

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
              ML  + + D  T+T +++AC  +GL   G+  +   +  E   +P   +     +VT
Sbjct: 384 --SMLKCKQKPDMVTFTCLLAACTQAGLTEEGRH-YFKEMHNEYGVSPR--MEHYACMVT 438

Query: 330 LYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
           L  + GK++EA D+ + MP E D   W ++L +    G +D A+   E +
Sbjct: 439 LLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKL 488



 Score = 56.6 bits (135), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 6/148 (4%)

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
           +R   F P  +    A  SC     L   R LHA    SG        ++L+  Y R G 
Sbjct: 11  LRHVSFPPDPHLLPTAFKSCP---TLPLARALHAVAEVSGLARDPFVASSLLHAYLRLGT 67

Query: 469 VEAANCVFNTMPNVDS--VSWNAMIAALGQHGNGARAIELYEQMLKE-GILPDRITFLTV 525
              A  +F+ MP      V W+A++AA    G+   A  L E+M ++ G+ P+ IT+  +
Sbjct: 68  TGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGL 127

Query: 526 LSACNHAGLVKEGRRYFETMHGPYGIPP 553
           +S  N +G  ++      TMHG   + P
Sbjct: 128 VSGLNRSGRARDAVVALATMHGEGLLRP 155


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 273/759 (35%), Positives = 414/759 (54%), Gaps = 67/759 (8%)

Query: 81  IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
           I   T L+  Y+   +V L+R  F++ P K  D   +N+MI+AY HN + H AI  F  +
Sbjct: 151 IFISTRLVNLYANLGDVSLSRCTFDQIPQK--DVYTWNSMISAYVHNGHFHEAIGCFYQL 208

Query: 141 RR-DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
               +++PD +TF  VL A   +V+  +    +HC   K G      V  +LI +Y    
Sbjct: 209 LLVSEIRPDFYTFPPVLKACGTLVDGRR----IHCWAFKLGFQWNVFVAASLIHMY---- 260

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKN-------DYLDAAREFLDGMS 252
                S     G AR +FD+MP RD  SW  M++G ++N       D LD  R  L+G+ 
Sbjct: 261 -----SRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMR--LEGIK 313

Query: 253 ENVGVAWNAL--------ISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304
            N     + L        IS  +   L ++   ++ D F   ++I+  A  G     ++ 
Sbjct: 314 MNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKA 373

Query: 305 HAYLLRTEA--------------KPTPEFSLPVNNAL-------VTLYWKCGKVNEARDI 343
              +  T+                P       V   L       +TL      V ++RD 
Sbjct: 374 FQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDC 433

Query: 344 FNQMP-----------ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
            N                D+V  NA++  Y   GL+D A  +FE +  ++++SW  +I+G
Sbjct: 434 KNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITG 493

Query: 393 LAQNGYGEEGLKLFSQMR-LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
            AQNG   E ++++  M   +   P    +   + + A +GAL+ G ++H +++ +    
Sbjct: 494 YAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHL 553

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
            +     LI +Y +CG +  A  +F  +P   SV+WNA+I+  G HG+  + ++L+ +ML
Sbjct: 554 DVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEML 613

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571
            EG+ PD +TF+++LSAC+H+G V+EG+  F  M   YGI P   HY   +DLL RAG  
Sbjct: 614 DEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-EYGIKPSLKHYGCMVDLLGRAGYL 672

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631
             A   I  +P +P A IW ALL  CRIHGNI+LG  A+++LF++   + G YVLLSN+Y
Sbjct: 673 EMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIY 732

Query: 632 ANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLV 691
           AN+G+W+   +VR L R+RG+KK PG S IEV+ KV VF   + +HP+ + +Y+ L  L 
Sbjct: 733 ANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLT 792

Query: 692 LEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICG 751
            +M+ LGY+PD  FVL D+E D+KE+ L++HSE+LA+AFG++  P  + +R+ KNLR+CG
Sbjct: 793 AKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCG 852

Query: 752 DCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           DCHNA KF+S++  REIVVRD  RFHHF+DG CSCGDYW
Sbjct: 853 DCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 116/488 (23%), Positives = 202/488 (41%), Gaps = 109/488 (22%)

Query: 17  ASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEI 76
            S L +C     I++++   +H ++I  G +    + N LI++Y K   L  AR  F ++
Sbjct: 320 VSILPVCPQLGDISTAML--IHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQM 377

Query: 77  PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
              D+V+  ++IAAY  +D+   A   F K                              
Sbjct: 378 FITDVVSWNSIIAAYEQNDDPVTAHGFFVK------------------------------ 407

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ---MHCTVVKSGTGLFTSVL-NALI 192
              M+ +  +PD  T  S    LA IV + + C     +H  +++ G  +   V+ NA++
Sbjct: 408 ---MQLNGFQPDLLTLVS----LASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVV 460

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
            +Y K           L+ +A +VF+ +  +D +SW T++TGY +N     A E    M 
Sbjct: 461 DMYAKL---------GLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMME 511

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
           E                        I  ++ T+ S++ A A+ G  + G ++H  +++T 
Sbjct: 512 E---------------------CKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTN 550

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
                   + V   L+ +Y KCG++ +A  +F Q+P+   V+WNAI+S +          
Sbjct: 551 L----HLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCH---------- 596

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
                                  +G+ E+ LKLF +M  EG KP    F   +++C+  G
Sbjct: 597 ---------------------GIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSG 635

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMI 491
            +E G+     +   G   SL     ++ +  R G +E A      MP   D+  W A++
Sbjct: 636 FVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALL 695

Query: 492 AALGQHGN 499
            A   HGN
Sbjct: 696 GACRIHGN 703



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 108/215 (50%), Gaps = 35/215 (16%)

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
           S+ ++  LV LY   G V+ +R  F+Q+P++D+ +WN+++SAYV                
Sbjct: 150 SIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYV---------------- 193

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL-EGFKPCDYAFAGAITSCAGLGALENGR 438
                           NG+  E +  F Q+ L    +P  Y F   + +C   G L +GR
Sbjct: 194 ---------------HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGR 235

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           ++H      G+  ++    +LI MY+R G    A  +F+ MP  D  SWNAMI+ L Q+G
Sbjct: 236 RIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNG 295

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533
           N A+A+++ ++M  EGI  + +T +++L  C   G
Sbjct: 296 NAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLG 330



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 100/405 (24%), Positives = 170/405 (41%), Gaps = 63/405 (15%)

Query: 27  NPITSSLARSVHAHMISSGFKPREHIINRLIDIY-----CKSLKLVYARTLFDEIPQPDI 81
           +P+T   A      M  +GF+P    +  L  I      CK+ + V+   +       D+
Sbjct: 397 DPVT---AHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDV 453

Query: 82  VARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMR 141
           V    ++  Y+    +  A ++F    + ++D + +N +IT Y+ N     AIE+++ M 
Sbjct: 454 VIGNAVVDMYAKLGLLDSAHKVFEI--ILVKDVISWNTLITGYAQNGLASEAIEVYKMME 511

Query: 142 R-DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVS 200
              ++ P+  T+ S+L A A  V   +Q M++H  V+K+   L   V   LI VY KC  
Sbjct: 512 ECKEIIPNQGTWVSILPAYAH-VGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKC-- 568

Query: 201 SPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWN 260
              V + SL       F ++P+   ++W  +++ +                         
Sbjct: 569 GRLVDAMSL-------FYQVPQESSVTWNAIISCHG------------------------ 597

Query: 261 ALISGYVHRELK----MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
             I G+  + LK    ML   ++ D  T+ S++SAC++SG    GK     +     KP 
Sbjct: 598 --IHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKP- 654

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAK--- 372
              SL     +V L  + G +  A      MP + D   W A+L A    G I+  K   
Sbjct: 655 ---SLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFAS 711

Query: 373 -SLFEAMRERNLLSWTVMISGLAQNGYGEEGL-KLFSQMRLEGFK 415
             LFE   +   + + V++S +  N    EG+ K+ S  R  G K
Sbjct: 712 DRLFEV--DSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLK 754



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 78/164 (47%), Gaps = 6/164 (3%)

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           LHA LV +G   S+     L+ +YA  G V  + C F+ +P  D  +WN+MI+A   +G+
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGH 197

Query: 500 GARAIE-LYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
              AI   Y+ +L   I PD  TF  VL AC   G + +GRR         G        
Sbjct: 198 FHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRR-IHCWAFKLGFQWNVFVA 253

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
           A  I +  R G    A+ + D +PF+     W A+++G   +GN
Sbjct: 254 ASLIHMYSRFGFTGIARSLFDDMPFRDMGS-WNAMISGLIQNGN 296


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 273/783 (34%), Positives = 414/783 (52%), Gaps = 113/783 (14%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+   T+L+  Y    N K  R++F++  +K R+ V +  +I+ Y+ NS     + LF  
Sbjct: 127 DVSVGTSLVDTYMKGSNFKDGRKVFDE--MKERNVVTWTTLISGYARNSMNDEVLTLFMR 184

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEK---QCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           M+ +  +P++FTF + L  LA    EE    + +Q+H  VVK+G      V N+LI++Y+
Sbjct: 185 MQNEGTQPNSFTFAAALGVLA----EEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYL 240

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           KC +         +  AR +FD+   +  ++W +M++GY  N                 G
Sbjct: 241 KCGN---------VRKARILFDKTEVKSVVTWNSMISGYAAN-----------------G 274

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
           +   AL   Y      M +  ++L E ++ SVI  CAN    R  +Q+H  ++    K  
Sbjct: 275 LDLEALGMFY-----SMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVV----KYG 325

Query: 317 PEFSLPVNNALVTLYWKC----------------GKV----------------NEARDIF 344
             F   +  AL+  Y KC                G V                 EA D+F
Sbjct: 326 FLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLF 385

Query: 345 NQMP-----------------------------------ERDLVSWNAILSAYVSAGLID 369
           ++M                                    ER      A+L AYV  G ++
Sbjct: 386 SEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVE 445

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
           EA  +F  + ++++++W+ M++G AQ G  E  +K+F ++   G KP ++ F+  +  CA
Sbjct: 446 EAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCA 505

Query: 430 GLGA-LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
              A +  G+Q H   + S  DSSL   +AL+TMYA+ G +E+A  VF      D VSWN
Sbjct: 506 ATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWN 565

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP 548
           +MI+   QHG   +A++++++M K  +  D +TF+ V +AC HAGLV+EG +YF+ M   
Sbjct: 566 SMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRD 625

Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
             I P ++H +  +DL  RAG+  +A  VI+++P    + IW  +LA CR+H   +LG  
Sbjct: 626 CKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRL 685

Query: 609 AAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVH 668
           AAE++  + P  +  YVLLSNMYA  G W + A+VRKLM +R VKKEPG SWIEV NK +
Sbjct: 686 AAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTY 745

Query: 669 VFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAV 728
            FL  D +HP    +Y  LE L   ++ LGY PDT +VL D++ + KE  L+ HSE+LA+
Sbjct: 746 SFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAI 805

Query: 729 AFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHF-RDGKCSCG 787
           AFGL+  P G+ + ++KNLR+CGDCH   K ++K+  REIVVRD  RFHHF  DG CSCG
Sbjct: 806 AFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCG 865

Query: 788 DYW 790
           D+W
Sbjct: 866 DFW 868



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 133/531 (25%), Positives = 224/531 (42%), Gaps = 108/531 (20%)

Query: 100 AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL 159
           A  +F+K+P + R++  Y +++  +S +     A  LF ++ R  ++ D   F+SVL   
Sbjct: 46  AHNLFDKSPGRDRES--YISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVS 103

Query: 160 ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDE 219
           A + +E     Q+HC  +K G                      F+   S+          
Sbjct: 104 ATLCDELFG-RQLHCQCIKFG----------------------FLDDVSV---------- 130

Query: 220 MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY----VHRELKMLM 275
                    T+++  Y+K       R+  D M E   V W  LISGY    ++ E+  L 
Sbjct: 131 --------GTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLF 182

Query: 276 LRIQ-----LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
           +R+Q      + FT+ + +   A  G+   G QVH  +++     T    +PV+N+L+ L
Sbjct: 183 MRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKT----IPVSNSLINL 238

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y KCG V +AR +F++   + +V+WN+++S Y + GL  EA                   
Sbjct: 239 YLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEA------------------- 279

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
                       L +F  MRL   +  + +FA  I  CA L  L    QLH  +V  G+ 
Sbjct: 280 ------------LGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFL 327

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNV-DSVSWNAMIAALGQHGNGARAIELYEQ 509
              +   AL+  Y++C  +  A  +F  +  V + VSW AMI+   Q+     A++L+ +
Sbjct: 328 FDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSE 387

Query: 510 MLKEGILPDRITFLTVLSACN-------HAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562
           M ++G+ P+  T+  +L+A         HA +VK       T+                +
Sbjct: 388 MKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVG------------TALL 435

Query: 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
           D   + GK  EA  V   +  K     W A+LAG    G  +  I+   +L
Sbjct: 436 DAYVKLGKVEEAAKVFSGIDDKDIVA-WSAMLAGYAQTGETEAAIKMFGEL 485



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 143/327 (43%), Gaps = 70/327 (21%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           VHA ++ + ++    +   L+D Y K  K+  A  +F  I   DIVA + ++A Y+ +  
Sbjct: 415 VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGE 474

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
            +                                 AAI++F ++ +  +KP+ FTF+S+L
Sbjct: 475 TE---------------------------------AAIKMFGELTKGGIKPNEFTFSSIL 501

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
           +  A       Q  Q H   +KS       V +AL+++Y K         +  + +A  V
Sbjct: 502 NVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAK---------KGNIESAEEV 552

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLML 276
           F    E+D +SW +M++GY ++                 G A  AL    V +E+K    
Sbjct: 553 FKRQREKDLVSWNSMISGYAQH-----------------GQAMKAL---DVFKEMK--KR 590

Query: 277 RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR-TEAKPTPEFSLPVNNALVTLYWKCG 335
           ++++D  T+  V +AC ++GL   G++    ++R  +  PT E     N+ +V LY + G
Sbjct: 591 KVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEH----NSCMVDLYSRAG 646

Query: 336 KVNEARDIFNQMPE-RDLVSWNAILSA 361
           ++ +A  +   MP       W  IL+A
Sbjct: 647 QLEKAMKVIENMPNPAGSTIWRTILAA 673



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 107/243 (44%), Gaps = 3/243 (1%)

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
           VS+  +  A +LF+    R+  S+  ++ G +++G  +E  +LF  +   G +     F+
Sbjct: 38  VSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFS 97

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
             +   A L     GRQLH Q +  G+   +S G +L+  Y +    +    VF+ M   
Sbjct: 98  SVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKER 157

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
           + V+W  +I+   ++      + L+ +M  EG  P+  TF   L      G+   G +  
Sbjct: 158 NVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQ-V 216

Query: 543 ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
            T+    G+          I+L  + G   +A+ + D    K S   W ++++G   +G 
Sbjct: 217 HTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK-SVVTWNSMISGYAANG- 274

Query: 603 IDL 605
           +DL
Sbjct: 275 LDL 277


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 279/779 (35%), Positives = 417/779 (53%), Gaps = 66/779 (8%)

Query: 60  YCKSL---KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVF 116
           YC +L   K ++AR +  +  Q ++     L+  Y    NV LAR  F+   ++ RD   
Sbjct: 63  YCTNLQSAKCLHARLVVSKQIQ-NVCISAKLVNLYCYLGNVALARHTFDH--IQNRDVYA 119

Query: 117 YNAMITAYSHNSNGHAAIELFR-DMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
           +N MI+ Y    N    I  F   M    + PD  TF SVL A   +++  K    +HC 
Sbjct: 120 WNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNK----IHCL 175

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
            +K G      V  +LI +Y         S    +G AR +FDEMP RD  SW  M++GY
Sbjct: 176 ALKFGFMWDVYVAASLIHLY---------SRYKAVGNARILFDEMPVRDMGSWNAMISGY 226

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALIS-----GYVHRELKMLMLRI----QLDEFTYT 286
            ++     A    +G+     V   +L+S     G  +R + +    I    + + F   
Sbjct: 227 CQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSN 286

Query: 287 SVISACANSGLFRLGKQV----------------HAYLLRTEAKPTPEFSLPVNNALVTL 330
            +I   A  G  R  ++V                 AY L  +  P    SL     L  +
Sbjct: 287 KLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQ--PLRAISLFQEMRLSRI 344

Query: 331 YWKCGKVNEARDIFNQMPE------------------RDLVSWNAILSAYVSAGLIDEAK 372
              C  +     I +Q+ +                   D+   NA++  Y   GL+D A+
Sbjct: 345 QPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSAR 404

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA-FAGAITSCAGL 431
           ++F  +   +++SW  +ISG AQNG+  E +++++ M  EG    +   +   + +C+  
Sbjct: 405 AVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQA 464

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
           GAL  G +LH +L+ +G    +    +L  MY +CG +E A  +F  +P V+SV WN +I
Sbjct: 465 GALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLI 524

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
           A  G HG+G +A+ L+++ML EG+ PD ITF+T+LSAC+H+GLV EG+  FE M   YGI
Sbjct: 525 ACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGI 584

Query: 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611
            P   HY   +D+  RAG+   A   I S+  +P A IW ALL+ CR+HGN+DLG  A+E
Sbjct: 585 TPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASE 644

Query: 612 QLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFL 671
            LF++ P H G +VLLSNMYA+ G+W+    +R +   +G++K PG S +EVDNKV VF 
Sbjct: 645 HLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFY 704

Query: 672 VDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFG 731
             +  HP  + +Y+ L  L  +++ +GYVPD +FVL D+E D+KE+ L +HSE+LA+AF 
Sbjct: 705 TGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFA 764

Query: 732 LMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           L+  P   T+R+ KNLR+CGDCH+  KF+SK+  REI+VRD  RFHHF++G CSCGDYW
Sbjct: 765 LIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823



 Score = 59.3 bits (142), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 148/348 (42%), Gaps = 51/348 (14%)

Query: 52  IINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKM 111
           I+++L DI  ++ + V   TL       DI     ++  Y+    V  AR +FN  P   
Sbjct: 357 ILSQLGDI--RACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP--N 412

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPDNFTFTSVLSALALIVEEEKQCM 170
            D + +N +I+ Y+ N     AIE++  M  + ++  +  T+ SVL A +      +Q M
Sbjct: 413 TDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQ-AGALRQGM 471

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKC----------------VSSPF---VSSRSLMG 211
           ++H  ++K+G  L   V+ +L  +Y KC                 S P+   ++     G
Sbjct: 472 KLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHG 531

Query: 212 AARR-------VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA-----W 259
              +       + DE  + D +++ T+++    +  +D  +   + M  + G+      +
Sbjct: 532 HGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHY 591

Query: 260 NALI-----SGYVHRELKMLM-LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
             ++     +G +   LK +  + +Q D   + +++SAC   G   LGK    +L   E 
Sbjct: 592 GCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVE- 650

Query: 314 KPTPEFSLPVNNALVTLYWKCGK---VNEARDIFNQMPERDLVSWNAI 358
              PE  +  +  L  +Y   GK   V+E R I +    R    W+++
Sbjct: 651 ---PE-HVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSM 694


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 265/741 (35%), Positives = 432/741 (58%), Gaps = 48/741 (6%)

Query: 61  CKSLKL---VYARTLFDEIPQPDIVARTTLIAAYS---ASDNVKLAREMFNKTPLKMRDT 114
           CKS K    ++A+T+ + +    I + + LI+ +S   + D +  +R +F++  +   + 
Sbjct: 19  CKSFKQGLQIHAQTIVNGLHH-QIFSISRLISFFSLLGSKDGLDHSRLLFSQ--IDCPNL 75

Query: 115 VFYNAMITAYSHNSNGHAAIELFRDMRRDDVK-PDNFTFTSVLSALALIVEEEKQCMQMH 173
             +N MI  YS + N   AI L+  M    +  P+NFTF  +L++ A +   E    ++H
Sbjct: 76  FMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPG-HEVH 134

Query: 174 CTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMT 233
             ++K G      V NALI +Y         S    +  AR +FDE   RD +S+ TM+ 
Sbjct: 135 SHIIKHGFESDLFVRNALIHLY---------SVFGNLNLARTLFDESLVRDLVSYNTMIK 185

Query: 234 GYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACA 293
           GY + +  ++A   L G  +N G                     I  DEFT+ ++ S C+
Sbjct: 186 GYAEVNQPESAL-CLFGEMQNSG---------------------ILPDEFTFVALFSVCS 223

Query: 294 NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM-PERDL 352
                 +GKQ+HA + +     + + ++ + +A+V +Y KCG +N A  +F+ M   +  
Sbjct: 224 VLNEPNVGKQIHAQVYKN--LRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSA 281

Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
            +W++++  Y   G I+ A+ LF  M ER+++SWT MISG +Q G   E L+LF +M   
Sbjct: 282 AAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEAL 341

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG-YDSSLSAGNALITMYARCGVVEA 471
           G KP +      +++CA LGA + G++L+ Q + +G ++ +     A++ MYA+CG +++
Sbjct: 342 GIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDS 401

Query: 472 ANCVFNTM-PNVDS-VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           A  +F  +  N+ +   +N+MIA L QHG G  AI ++ +++  G+ PD +TF+ VL AC
Sbjct: 402 ALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCAC 461

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
            H+GL++EG++ FE+M   YGI P  +HY   +DLL R G   EA D++  +PF+ ++ I
Sbjct: 462 GHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVI 521

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
           W ALL+ CR HGN+ +G  A ++L ++   H   YVLLSN+ A+  +W++A +VRK+M D
Sbjct: 522 WRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMED 581

Query: 650 RGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHD 709
            G++K PG S+IE+   +H F+  D +HP+ + +   L+ + + ++  GYVP+T  V+ D
Sbjct: 582 HGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFD 641

Query: 710 MESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIV 769
           ++ ++KE  +S HSEKLA+AFGLM      T+R++KNLRIC DCH AFK +S++ GREI 
Sbjct: 642 IDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREIT 701

Query: 770 VRDGKRFHHFRDGKCSCGDYW 790
           VRD  RFHHFR+G CSC D+W
Sbjct: 702 VRDTMRFHHFRNGSCSCMDFW 722



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 142/535 (26%), Positives = 241/535 (45%), Gaps = 95/535 (17%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           VH+H+I  GF+    + N LI +Y     L  ARTLFDE    D+V+             
Sbjct: 133 VHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVS------------- 179

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
                               YN MI  Y+  +   +A+ LF +M+   + PD FTF ++ 
Sbjct: 180 --------------------YNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALF 219

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVL--NALISVYVKCVSSPFVSSRSLMGAAR 214
           S  + ++ E     Q+H  V K+   + +++L  +A++ +Y KC          L+  A 
Sbjct: 220 SVCS-VLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKC---------GLINIAE 269

Query: 215 RVFDEM-PERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR---- 269
           RVF  M   +   +W++M+ GY +   ++ AR+  + M E   ++W A+ISGY       
Sbjct: 270 RVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCS 329

Query: 270 ---EL--KMLMLRIQLDEFTYTSVISACANSGLFRLGKQV-HAYLLRTEAKPTPEFSLPV 323
              EL  +M  L I+ DE T  +V+SACA  G F LGK++ H Y+           +  +
Sbjct: 330 EALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYI----ENGVFNQNTIL 385

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
             A++ +Y KCG ++ A +IF ++ +             +  G +               
Sbjct: 386 TAAVMDMYAKCGSIDSALEIFRRVGKN------------MKTGFV--------------- 418

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
             +  MI+GLAQ+G GE  + +F ++   G KP +  F G + +C   G +E G++L   
Sbjct: 419 --FNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFES 476

Query: 444 LVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGA 501
           + ++ G    +     ++ +  R G +E A  +   MP   +SV W A+++A   HGN  
Sbjct: 477 MFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGN-V 535

Query: 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI--PPG 554
           +  E+  Q L E        ++ + +    A   +E R+  + M   +GI  PPG
Sbjct: 536 KIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVME-DHGIRKPPG 589



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 17/164 (10%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA- 90
           S A  +   M + G KP E  +  ++    +       + L+ +  +  +  + T++ A 
Sbjct: 329 SEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAA 388

Query: 91  ----YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
               Y+   ++  A E+F +    M+    +N+MI   + +  G  AI +FR++    +K
Sbjct: 389 VMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLK 448

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNA 190
           PD  TF  VL A              H  +++ G  LF S+ NA
Sbjct: 449 PDEVTFVGVLCACG------------HSGLIEEGKKLFESMFNA 480


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 244/622 (39%), Positives = 360/622 (57%), Gaps = 36/622 (5%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           ++H  ++K+G    + + N L+ VY KC          L+  A ++FDEMP RD +SW +
Sbjct: 24  ELHSQIIKAGFDKSSLLSNTLLDVYGKC---------GLIPQALQLFDEMPNRDHVSWAS 74

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++T + K          L+ M  + G                     +Q D F +  ++ 
Sbjct: 75  ILTAHNKALIPRRTLSMLNTMFTHDG---------------------LQPDHFVFACIVR 113

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           AC++ G  RLGKQVHA  + +           V ++L+ +Y KCG+ ++AR +F+ +  +
Sbjct: 114 ACSSLGYLRLGKQVHARFMLSFFCDDE----VVKSSLIDMYTKCGQPDDARAVFDSILFK 169

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           + VSW +++S Y  +G   EA  LF     RNL SWT +ISGL Q+G+G     LF++MR
Sbjct: 170 NSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMR 229

Query: 411 LEGFKPCD-YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
            EG    D    +  +  CA L  LE G+Q+H  ++  G++S L   NAL+ MYA+C  +
Sbjct: 230 REGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDI 289

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
            AA  +F  MP  D +SW ++I    QHG    A+ LY++M+   I P+ +TF+ +L AC
Sbjct: 290 LAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYAC 349

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
           +HAGLV  GR  F +M   Y I P   HY   +DLL R+G   EA++++D +PFKP  P 
Sbjct: 350 SHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPT 409

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
           W +LL+ C  H N+++G++ A+++  L P    TY+LLSN+YA    W   ++VRKLM  
Sbjct: 410 WASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSS 469

Query: 650 RGVKKEPGCSWIEVDNKVHVFLVDDTA-HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLH 708
             V+KEPG S I+      VF   ++  HP    +   L+ L  EMRK GYVP+T FVL+
Sbjct: 470 MEVRKEPGYSSIDFGKDSQVFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLY 529

Query: 709 DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREI 768
           D+E  +KE  L  HSE+LAVA+GL+K   G  +R++KNLRICGDCHN  KF+S +V REI
Sbjct: 530 DIEQQEKEKQLFWHSERLAVAYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREI 589

Query: 769 VVRDGKRFHHFRDGKCSCGDYW 790
           +VRD  R+HHF++GKCSC D+W
Sbjct: 590 MVRDATRYHHFKEGKCSCNDFW 611



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 135/512 (26%), Positives = 229/512 (44%), Gaps = 95/512 (18%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF 73
           + +  QLQLC  R   ++S A  +H+ +I +GF     + N L+D+Y K   +  A  LF
Sbjct: 4   SHFLHQLQLCARRQ--SASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLF 61

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
           DE+P  D V+  +++ A+             NK  +  R     N M T           
Sbjct: 62  DEMPNRDHVSWASILTAH-------------NKALIPRRTLSMLNTMFT----------- 97

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
                    D ++PD+F F  ++ A + +    +   Q+H   + S       V ++LI 
Sbjct: 98  --------HDGLQPDHFVFACIVRACSSL-GYLRLGKQVHARFMLSFFCDDEVVKSSLID 148

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND-YLDAAREFLDGMS 252
           +Y KC   P          AR VFD +  ++ +SWT+M++GY ++    +A   FL    
Sbjct: 149 MYTKC-GQP--------DDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPV 199

Query: 253 ENVGVAWNALISGYVH-----------RELKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
            N+  +W ALISG +             E++   + I +D    +SV+  CAN  L  LG
Sbjct: 200 RNL-FSWTALISGLIQSGHGIYSFSLFNEMRREGIDI-VDPLVLSSVVGGCANLALLELG 257

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
           KQ+H  ++        E  L ++NALV +Y KC  +  A+DIF +MP +D++SW +I   
Sbjct: 258 KQIHGLVIALGF----ESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSI--- 310

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
                                       I G AQ+G  EE L L+ +M L   KP +  F
Sbjct: 311 ----------------------------IVGTAQHGKAEEALTLYDEMVLSRIKPNEVTF 342

Query: 422 AGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
            G + +C+  G +  GR+L   +      + SL     L+ + +R G ++ A  + + +P
Sbjct: 343 VGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIP 402

Query: 481 -NVDSVSWNAMIAALGQHGNGARAIELYEQML 511
              D  +W ++++A  +H N    + + +++L
Sbjct: 403 FKPDEPTWASLLSACMRHNNLEMGVRIADRVL 434



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 99/197 (50%), Gaps = 13/197 (6%)

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
           F   +  CA   +     +LH+Q++ +G+D S    N L+ +Y +CG++  A  +F+ MP
Sbjct: 6   FLHQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMP 65

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLK-EGILPDRITFLTVLSACNHAGLVKEGR 539
           N D VSW +++ A  +     R + +   M   +G+ PD   F  ++ AC+  G ++ G+
Sbjct: 66  NRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGK 125

Query: 540 RYFETMHGPYGIP---PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           +    +H  + +      E   +  ID+  + G+  +A+ V DS+ FK S   W ++++G
Sbjct: 126 Q----VHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVS-WTSMISG 180

Query: 597 CRIHGN----IDLGIQA 609
               G     +DL +QA
Sbjct: 181 YARSGRKCEAMDLFLQA 197


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 246/626 (39%), Positives = 374/626 (59%), Gaps = 49/626 (7%)

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY--- 266
           +  AR +FD+M  RD  SW  M++ Y K+  ++  R   D MS +  V++N +I+G+   
Sbjct: 74  LSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGN 133

Query: 267 -VHRELKMLMLRIQLD-----EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
               +     +R+Q +     ++T+ SV+ AC+     + GKQ+H  ++ T        S
Sbjct: 134 GCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGE----S 189

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA----------------------- 357
           + V NAL  +Y KCG +++AR +F++M  +++VSWN+                       
Sbjct: 190 VFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQS 249

Query: 358 ------------ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKL 405
                       ILSAY   G IDEA   F  ++E++ + WT M+ G AQNG  E+ L L
Sbjct: 250 SGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLL 309

Query: 406 FSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465
           F +M LE  +P ++  +  ++SCA L +L  G+ +H + V  G D  L   +AL+ MY++
Sbjct: 310 FREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSK 369

Query: 466 CGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTV 525
           CG    A  VF  M   + +SWN+MI    Q+G    A+ LYE+ML E + PD ITF+ V
Sbjct: 370 CGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGV 429

Query: 526 LSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP 585
           LSAC HAGLV+ G+ YF ++   +G+ P  DHY+  I+LL RAG   +A D+I S+ F+P
Sbjct: 430 LSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEP 489

Query: 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645
           +  IW  LL+ CRI+ +++ G  AA  LF+L PH+AG Y++LSN+YA  GRW D A VR 
Sbjct: 490 NCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRS 549

Query: 646 LMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKF 705
           LM++  +KK    SWIE+DN+VH F+ +D  H E + +Y+ L +L+ ++++ G+ PDT  
Sbjct: 550 LMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTHSETEQIYEELNRLIKKLQESGFTPDTNL 609

Query: 706 VLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT-VRVLKNLRICGDCHNAFKFMSKVV 764
           VLHD+  ++K  ++  HSEKLA+AF L+K P G T +R++KN+R+CGDCH   KF+SK++
Sbjct: 610 VLHDVVEEEKFDSICYHSEKLALAFWLIKKPHGRTPIRIMKNIRVCGDCHVFMKFVSKII 669

Query: 765 GREIVVRDGKRFHHFRDGKCSCGDYW 790
            R I++RD  RFHHF +G+CSC D W
Sbjct: 670 RRPIILRDINRFHHFIEGRCSCKDSW 695



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 152/262 (58%), Gaps = 3/262 (1%)

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
           +YT ++  C  S      K++  ++     +PT  F   + N L+ LY K G +++ARD+
Sbjct: 24  SYTRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTF---LQNRLLHLYAKSGNLSDARDL 80

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
           F++M  RD+ SWNA+LSAY  +G +++ +++F+ M   + +S+  +I+G + NG   + L
Sbjct: 81  FDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQAL 140

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
           + F +M+ EGF+  DY     + +C+ L  ++ G+Q+H ++V +    S+   NAL  MY
Sbjct: 141 EFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMY 200

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
           A+CG ++ A  +F+ M N + VSWN+MI+   Q+G      +L+ +M   G++PD++T  
Sbjct: 201 AKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTIS 260

Query: 524 TVLSACNHAGLVKEGRRYFETM 545
            +LSA    G + E  + F  +
Sbjct: 261 NILSAYFQCGYIDEACKTFREI 282



 Score =  166 bits (419), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 157/601 (26%), Positives = 256/601 (42%), Gaps = 140/601 (23%)

Query: 5   NADYIRTLANR--YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHII-NRLIDIYC 61
           +A Y R  AN   Y   L  C   N +    A+ +  HM    ++P +  + NRL+ +Y 
Sbjct: 12  DALYSRGTANSESYTRLLLQCVRSNDVVQ--AKRLQTHMDLHLYQPTDTFLQNRLLHLYA 69

Query: 62  KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMI 121
           KS  L  AR LFD++ + D+ +   +++AYS S NV+  R +F++  + + D V YN +I
Sbjct: 70  KSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQ--MSVHDAVSYNTVI 127

Query: 122 TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGT 181
             +S N     A+E F  M+ +  +  ++T  SVL A + +++  K+  Q+H  +V +  
Sbjct: 128 AGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDI-KRGKQIHGRIVATSL 186

Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND-- 239
           G    V NAL ++Y KC           +  AR +FD M  ++ +SW +M++GY++N   
Sbjct: 187 GESVFVWNALTNMYAKC---------GALDQARWLFDRMVNKNVVSWNSMISGYLQNGQP 237

Query: 240 ---------------------------------YLDAAREFLDGMSENVGVAWNALISG- 265
                                            Y+D A +    + E   V W  ++ G 
Sbjct: 238 ETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGC 297

Query: 266 ----------YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                      + RE  ML+  ++ D FT +SV+S+CA       G+ VH   +      
Sbjct: 298 AQNGKEEDALLLFRE--MLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGV-- 353

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
             +  L V++ALV +Y KCG+  +A  +F +M  R+++SWN+++  Y   G   EA +L+
Sbjct: 354 --DHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALY 411

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
           E M   NL                               KP +  F G +++C   G +E
Sbjct: 412 EEMLHENL-------------------------------KPDNITFVGVLSACMHAGLVE 440

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            G+         GY  S+S                    +    P  D  S   MI  LG
Sbjct: 441 RGQ---------GYFYSISK-------------------IHGMNPTFDHYS--CMINLLG 470

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG----RRYFET---MHGP 548
           + G   +A++L + M  E   P+ + + T+LS C     V  G    R  FE      GP
Sbjct: 471 RAGYMDKAVDLIKSMTFE---PNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGP 527

Query: 549 Y 549
           Y
Sbjct: 528 Y 528


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 271/774 (35%), Positives = 414/774 (53%), Gaps = 90/774 (11%)

Query: 38  HAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNV 97
           HA +  SGF     + N ++ +Y K   L +A  +FD++    I                
Sbjct: 282 HATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGI---------------- 325

Query: 98  KLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMR-RDDVKPDNFTFTSVL 156
                         +D V +N++++AY   S+ + A+ LF  M  R  + PD  +  ++L
Sbjct: 326 --------------QDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNIL 371

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
            A A +    +   Q+H   ++SG      V NA++ +Y KC           M  A +V
Sbjct: 372 PACASLAASLRG-RQVHGFSIRSGLVDDVFVGNAVVDMYAKC---------GKMEEANKV 421

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE-NVG---VAWNALISGYVHRELK 272
           F  M  +D +SW  M+TGY +   L+ A    + M+E N+    V W A+I+GY  R   
Sbjct: 422 FQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQG 481

Query: 273 MLMLRI---------QLDEFTYTSVISACANSGLFRLGKQVHAY----LLRTEAKPTPEF 319
              L +         + +  T  S++SAC + G    GK+ H Y    +L  +       
Sbjct: 482 CEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGAD 541

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
            L V N L+ +Y KC     AR +F+ +  +D                            
Sbjct: 542 DLKVINGLIDMYAKCQSTEVARKMFDSVSPKD---------------------------- 573

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL--EGFKPCDYAFAGAITSCAGLGALENG 437
            R++++WTVMI G AQ+G     L+LFS M    +  KP D+  + A+ +CA L AL  G
Sbjct: 574 -RDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFG 632

Query: 438 RQLHAQLVHSGYDSS-LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           RQ+HA ++ + Y S  L   N LI MY++ G V+ A  VF+ MP  ++VSW +++   G 
Sbjct: 633 RQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGM 692

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
           HG G  A+ ++++M K  ++PD ITFL VL AC+H+G+V  G  +F  M   +G+ PG +
Sbjct: 693 HGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPE 752

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           HYA  +DL  RAG+  EA  +I+ +P +P+  +W ALL+ CR+H N++LG  AA +L +L
Sbjct: 753 HYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLEL 812

Query: 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTA 676
              + G+Y LLSN+YAN  RW D AR+R  M+  G+KK PGCSWI+    V  F V D +
Sbjct: 813 ESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRS 872

Query: 677 HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLP 736
           HP++Q +Y+ L  L+  ++ +GYVP T F LHD++ ++K   L  HSEKLA+A+G++ L 
Sbjct: 873 HPQSQQIYETLADLIQRIKAIGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTLH 932

Query: 737 GGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             A +R+ KNLRICGDCH+A  ++SK++  EI++RD  RFHHF++G CSC  YW
Sbjct: 933 PRAPIRITKNLRICGDCHSAITYISKIIEHEIILRDSSRFHHFKNGSCSCKGYW 986



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 152/540 (28%), Positives = 249/540 (46%), Gaps = 63/540 (11%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           T LI  Y AS++   A  +  + P       ++N +I    H  +      L+R M+   
Sbjct: 195 TNLIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLG 254

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
             PD++TF  V  A A +         +H TV +SG      V NA++S+Y KC      
Sbjct: 255 WTPDHYTFPFVFKACANLSSLSLG-ASLHATVSRSGFASNVFVCNAVVSMYGKC------ 307

Query: 205 SSRSLMGAARRVFDEMPER---DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNA 261
                +  A  +FD++  R   D +SW ++++ Y+     + A      M+         
Sbjct: 308 ---GALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTT-------- 356

Query: 262 LISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
                  R L      +  D  +  +++ ACA+      G+QVH + +R+         +
Sbjct: 357 -------RHL------MSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVD----DV 399

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
            V NA+V +Y KCGK+ EA  +F +M  +D+VSWNA+++ Y  AG ++ A SLFE M E 
Sbjct: 400 FVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEE 459

Query: 382 NL----LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
           N+    ++WT +I+G AQ G G E L +F QM   G +P        +++C  +GAL +G
Sbjct: 460 NIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHG 519

Query: 438 RQLHAQLVH-----SGYD---SSLSAGNALITMYARCGVVEAANCVFNTMP--NVDSVSW 487
           ++ H   +       G D     L   N LI MYA+C   E A  +F+++   + D V+W
Sbjct: 520 KETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTW 579

Query: 488 NAMIAALGQHGNGARAIELYEQMLK--EGILPDRITFLTVLSACNHAGLVKEGRR----Y 541
             MI    QHG+   A++L+  M K  + I P+  T    L AC     ++ GR+     
Sbjct: 580 TVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYV 639

Query: 542 FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
               +G   +          ID+  ++G    A+ V D++P + +A  W +L+ G  +HG
Sbjct: 640 LRNFYGSVMLFVANC----LIDMYSKSGDVDTAQIVFDNMP-QRNAVSWTSLMTGYGMHG 694



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 125/490 (25%), Positives = 213/490 (43%), Gaps = 81/490 (16%)

Query: 28  PITSSLA-----RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIV 82
           P  +SLA     R VH   I SG      + N ++D+Y K  K+  A  +F  +   D+V
Sbjct: 372 PACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVV 431

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLK--MRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
           +   ++  YS +  ++ A  +F +   +    D V + A+IT Y+    G  A+++FR M
Sbjct: 432 SWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQM 491

Query: 141 RRDDVKPDNFTFTSVLSAL----ALIVEEEKQCMQMHCTVVKSGTGLFT---SVLNALIS 193
                +P+  T  S+LSA     AL+  +E  C  +   +   G         V+N LI 
Sbjct: 492 CDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLID 551

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMP--ERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           +Y KC S+           AR++FD +   +RD ++WT M+ GY ++   + A +   GM
Sbjct: 552 MYAKCQSTE---------VARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGM 602

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
            +                    +   I+ ++FT +  + ACA     R G+QVHAY+LR 
Sbjct: 603 FK--------------------MDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRN 642

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
                  F   V N L+ +Y K G V+ A+ +F+ MP+R+ VSW ++++ Y         
Sbjct: 643 FYGSVMLF---VANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGY--------- 690

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
                                   +G GE+ L++F +MR     P    F   + +C+  
Sbjct: 691 ----------------------GMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHS 728

Query: 432 GALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNA 489
           G +++G     ++    G D        ++ ++ R G +  A  + N MP     V W A
Sbjct: 729 GMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVA 788

Query: 490 MIAALGQHGN 499
           +++A   H N
Sbjct: 789 LLSACRLHSN 798



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 143/307 (46%), Gaps = 17/307 (5%)

Query: 358 ILSAYVSAGLIDEAKSLFEAM--RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           ++  Y+++     A  L E +     ++  W  +I      G   +   L+ QM+  G+ 
Sbjct: 197 LIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWT 256

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P  Y F     +CA L +L  G  LHA +  SG+ S++   NA+++MY +CG +  A+ +
Sbjct: 257 PDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNM 316

Query: 476 FNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL-PDRITFLTVLSACNH 531
           F+ + +    D VSWN++++A     +   A+ L+ +M    ++ PD I+ + +L AC  
Sbjct: 317 FDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACAS 376

Query: 532 AGLVKEGRRYFETMHGPYGIPPG--EDHYA--RFIDLLCRAGKFSEAKDVIDSLPFKPSA 587
                 GR+    +HG + I  G  +D +     +D+  + GK  EA  V   + FK   
Sbjct: 377 LAASLRGRQ----VHG-FSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVV 431

Query: 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQL-MPHHAGTYVLLSNMYANLGRWDDAARVRKL 646
             W A++ G    G ++  +   E++ +  +     T+  +   YA  G+  +A  V + 
Sbjct: 432 S-WNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQ 490

Query: 647 MRDRGVK 653
           M D G +
Sbjct: 491 MCDCGSR 497


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 266/654 (40%), Positives = 373/654 (57%), Gaps = 77/654 (11%)

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M R+ +  D  T++ ++    L+    +Q   +H  V  +G    T ++N LI++YVK  
Sbjct: 7   MHRNRLSADAITYSELIKC-CLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKF- 64

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                    L+  AR +FDEMP+R+ +SWTTM++ Y  ++    A +FL           
Sbjct: 65  --------GLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFL----------- 105

Query: 260 NALISGYVHRELKMLMLR--IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                        +LMLR  ++ + +TY+SV+ AC   GL  L +Q+H  +L    K   
Sbjct: 106 -------------ILMLREGVRPNMYTYSSVLRAC--DGLLNL-RQLHGSIL----KVGL 145

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
           E  + V +AL+  Y K G+ ++A ++FN+M   DLV WN+I                   
Sbjct: 146 ESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSI------------------- 186

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
                       I G AQN  G+E L L+ +M+   F          + +C GL  LE G
Sbjct: 187 ------------IGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELG 234

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN-TMPNVDSVSWNAMIAALGQ 496
           RQ+H  ++   YD  L   NAL+ MY +CG +E AN +F   M   D +SW+ MIA L Q
Sbjct: 235 RQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQ 292

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
           +G  A A++L+E M  +G  P+ IT L VL AC+HAGLV +G  YF++M   +GI PG +
Sbjct: 293 NGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGRE 352

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           HY   IDLL RAGK  EA  +I  +  +P A  W  LL  CR+H N+DL I AA+++ +L
Sbjct: 353 HYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKL 412

Query: 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTA 676
            P  AGTY+LLSN+YAN  +W+D A VR+ MR RGVKK+PGCSWIEV  +VH F++ D +
Sbjct: 413 DPADAGTYILLSNIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNS 472

Query: 677 HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLP 736
           HP  + + + L QL+  + +LGYVPDT FVL D+E +Q E +L  HSEKLA+ FGLM LP
Sbjct: 473 HPRIEEIKRELSQLIQRLMRLGYVPDTNFVLQDLEGEQMEDSLQYHSEKLAIVFGLMSLP 532

Query: 737 GGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
              T+ + KNLRICGDCH   K +S++  R IV+RD  R+HHFR G CSCGDYW
Sbjct: 533 NQKTIHIRKNLRICGDCHIFAKLVSQLENRVIVIRDPIRYHHFRGGVCSCGDYW 586



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 128/500 (25%), Positives = 213/500 (42%), Gaps = 110/500 (22%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y+  ++ C  R  +    AR VH H+ S+G++P+  +IN LI++Y K   L  AR LFDE
Sbjct: 19  YSELIKCCLVRGAVQQ--ARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDE 76

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P                                  R+ V +  MI+AYS+++  H A++
Sbjct: 77  MPD---------------------------------RNVVSWTTMISAYSNSNLNHKALD 103

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
               M R+ V+P+ +T++SVL A   ++       Q+H +++K G      V +ALI  Y
Sbjct: 104 FLILMLREGVRPNMYTYSSVLRACDGLL----NLRQLHGSILKVGLESDVFVRSALIDTY 159

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            K               A  VF+EM   D + W +++ G+ +N   D        M    
Sbjct: 160 SKLGEQH---------DALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRAD 210

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
            VA                      D+ T TSV+ AC    L  LG+QVH ++L+ +   
Sbjct: 211 FVA----------------------DQSTLTSVLRACTGLALLELGRQVHVHVLKYDQ-- 246

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQ-MPERDLVSWNAILSAYVSAGLIDEAKSL 374
                L +NNAL+ +Y KCG + +A  +F + M E+D++SW+ +++     G   +A  L
Sbjct: 247 ----DLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKL 302

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
           FEAM+ +                               G KP      G + +C+  G +
Sbjct: 303 FEAMKSK-------------------------------GPKPNYITILGVLFACSHAGLV 331

Query: 435 ENG-RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV-DSVSWNAMIA 492
            +G     +   H G D        +I +  R G ++ A  + + M +  D+V+W  ++ 
Sbjct: 332 NDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLG 391

Query: 493 ALGQHGNGARAIELYEQMLK 512
           A   H N   AI   +++LK
Sbjct: 392 ACRVHKNVDLAIYAAKEILK 411


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 260/714 (36%), Positives = 395/714 (55%), Gaps = 71/714 (9%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D  A   L+ AY     V+ A   F++  ++ RD   +NAM++    N+    A+ LF  
Sbjct: 103 DAFASGALVHAYLRFGRVRDAYRAFDE--MRHRDVPAWNAMLSGLCRNARAAEAVGLFGR 160

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M  + V  D  T +SVL  + +++ +    + MH   VK G      V NA+I VY K  
Sbjct: 161 MVMEGVAGDAVTVSSVLP-MCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKL- 218

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                    ++   R+VFD M  RD ++W ++++G+ +   + +A E   GM +      
Sbjct: 219 --------GMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRD------ 264

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
               SG            +  D  T  S+ SA A  G    G+ VH Y++R         
Sbjct: 265 ----SG------------VSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRG------- 301

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
                       W  G               D+++ NAI+  Y     I+ A+ +F++M 
Sbjct: 302 ------------WDVG---------------DIIAGNAIVDMYAKLSKIEAAQRMFDSMP 334

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RLEGFKPCDYAFAGAITSCAGLGALENGR 438
            R+ +SW  +I+G  QNG   E + ++  M + EG KP    F   + + + LGAL+ G 
Sbjct: 335 VRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGT 394

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           ++HA  + +G +  +  G  +I +YA+CG ++ A  +F   P   +  WNA+I+ +G HG
Sbjct: 395 RMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHG 454

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
           +GA+A+ L+ QM +EGI PD +TF+++L+AC+HAGLV +GR +F  M   YGI P   HY
Sbjct: 455 HGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHY 514

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
           A  +D+  RAG+  +A D I ++P KP + IW ALL  CRIHGN+++G  A++ LF+L P
Sbjct: 515 ACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDP 574

Query: 619 HHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDD--TA 676
            + G YVL+SNMYA +G+WD    VR L+R + ++K PG S IEV   V+VF   +    
Sbjct: 575 KNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNI 634

Query: 677 HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLP 736
           HP+ + + + L  L+ ++R LGYVPD  FVL D+E D+KE  L+ HSE+LA+AFG++  P
Sbjct: 635 HPQHEEIQRELLDLLAKIRSLGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTP 694

Query: 737 GGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
               + + KNLR+CGDCHNA K++SK+  REI+VRD  RFHHF+DG CSCGD+W
Sbjct: 695 PRTPLHIYKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGYCSCGDFW 748



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 123/478 (25%), Positives = 199/478 (41%), Gaps = 116/478 (24%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           +LA ++H + +  G      + N +ID+Y K   L   R +FD +   D+V   ++I+ +
Sbjct: 187 ALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGH 246

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                V                                  +A+E+F  MR   V PD  T
Sbjct: 247 EQGGQVA---------------------------------SAVEMFCGMRDSGVSPDVLT 273

Query: 152 FTSVLSALALIVEEEKQC------MQMHCTVVKSGTGLFTSVL-NALISVYVKCVSSPFV 204
             S+ SA+A       QC        +HC +V+ G  +   +  NA++ +Y K       
Sbjct: 274 LLSLASAIA-------QCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKL------ 320

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
              S + AA+R+FD MP RD +SW T++TGY++N     A    D M +           
Sbjct: 321 ---SKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQK----------- 366

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
              H  LK +       + T+ SV+ A ++ G  + G ++HA  ++T         + V 
Sbjct: 367 ---HEGLKPI-------QGTFVSVLPAYSHLGALQQGTRMHALSIKTGLN----LDVYVG 412

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
             ++ LY KCGK++EA  +F Q P R    WNA+                          
Sbjct: 413 TCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAV-------------------------- 446

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
                ISG+  +G+G + L LFSQM+ EG  P    F   + +C+  G ++ GR     +
Sbjct: 447 -----ISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFF-NM 500

Query: 445 VHSGYDSSLSAGN--ALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
           + + Y     A +   ++ M+ R G ++ A      MP   DS  W A++ A   HGN
Sbjct: 501 MQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGN 558


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/589 (40%), Positives = 363/589 (61%), Gaps = 20/589 (3%)

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A+ +FD M ERD ++WT M+T       ++ A+   D M E   VAW A+++    R  +
Sbjct: 73  AKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAWTAMLAANAERG-Q 131

Query: 273 MLMLRIQLDE------FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
           M   R   D+      F++TS++SA   SG  +   +V   +        PE++L    A
Sbjct: 132 MENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSM--------PEWNLVAWTA 183

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           ++T Y   G V  A+  F+ MPERDL++W A+LSAY   G +   + +F+ M ER+L+SW
Sbjct: 184 MLTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLISW 243

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRL-----EGFKPCDYAFAGAITSCAGLGALENGRQLH 441
             M++ L +N   EE  +LF +M       +G  P    F   + +C+ LGAL  GR++H
Sbjct: 244 ATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKIH 303

Query: 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGA 501
           A +   G+D+ L   NAL+  Y RCG +  A  VF+ M   D +SW++MI+A  Q G   
Sbjct: 304 AAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRGRVD 363

Query: 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF 561
            A+ELY +ML EG LPD I F++VL AC+++G+V+    +F ++ G   + P  +HYA  
Sbjct: 364 EAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACM 423

Query: 562 IDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621
           +D+L RAGK  +A+D++  +PF P   ++  +L+ C+++ +++ G  AAE +F+L P ++
Sbjct: 424 VDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDPENS 483

Query: 622 GTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQ 681
             Y+ L+N+Y+   R  DAAR+RKLM +RG+KK+PGCSWIEV ++VH F+  D  HP+  
Sbjct: 484 SPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGDKMHPQRD 543

Query: 682 AVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATV 741
            +Y  +++L  +M++ GY  DTK VL D+E D+KE  L  HSEKLA+AFGL+  P GA +
Sbjct: 544 EIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAFGLISTPPGAPL 603

Query: 742 RVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           R++KNLR+C DCH A K +SKV GREI+VRD  RFHHF++G CSC DYW
Sbjct: 604 RIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFQNGMCSCNDYW 652



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 114/463 (24%), Positives = 206/463 (44%), Gaps = 85/463 (18%)

Query: 56  LIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTV 115
           ++ IY +S  L  A+ +FD +P+  + + T L++A++ S + + A+ +F+   ++ RD +
Sbjct: 29  MLSIYARSGDLSNAKGVFDRMPRWSLGSWTALLSAFALSGHHEEAKTLFDT--MQERDLI 86

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
            +  M+T  +  SN   A   F  M   D+      +T++L+A A    E  Q      T
Sbjct: 87  AWTIMLTVLATFSNIEDAKYHFDQMPERDL----VAWTAMLAANA----ERGQMENARET 138

Query: 176 VVK-SGTGLFTSVLNALISVY-----VKCVSSPF--------------VSSRSLMG---A 212
             +     LF+    +L+S Y     VK     F              ++  SL G    
Sbjct: 139 FDQMPERNLFS--WTSLLSAYGRSGDVKAAGRVFDSMPEWNLVAWTAMLTGYSLSGDVVR 196

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL- 271
           A+R FD MPERD ++WT M++ Y  N +L   RE    M E   ++W  +++  V  +L 
Sbjct: 197 AKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLISWATMVAALVENDLL 256

Query: 272 ---KMLMLRIQL----------DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
              K L  R+            +  T+ +++ AC+  G    G+++HA +    A+   +
Sbjct: 257 EESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKIHAAV----AERGFD 312

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
             L V+NALV  Y +CG + +A+ +F+ M  RD++SW++++SA+   G +DEA       
Sbjct: 313 TDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEA------- 365

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
                                   ++L+ +M  EG  P D  F   + +C+  G +E   
Sbjct: 366 ------------------------MELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASG 401

Query: 439 QLHAQLV-HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
                +V  +  + +L     ++ +  R G +  A  +   MP
Sbjct: 402 DFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMP 444



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 176/386 (45%), Gaps = 44/386 (11%)

Query: 241 LDAAREFLDGMSENVGVAWNALISGYVH-------RELKMLMLRIQLDEFTYTSVISACA 293
           ++ AR+  D +++    +W  ++S Y         + +   M R  L   ++T+++SA A
Sbjct: 8   VERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLG--SWTALLSAFA 65

Query: 294 NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV 353
            SG        H    +T      E  L     ++T+      + +A+  F+QMPERDLV
Sbjct: 66  LSG--------HHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLV 117

Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
           +W A+L+A    G ++ A+  F+ M ERNL SWT ++S   ++G  +   ++F  M    
Sbjct: 118 AWTAMLAANAERGQMENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSM---- 173

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS--GYDS----SLSAGNALITMYARCG 467
                        +     A+  G  L   +V +   +DS     L A  A+++ YA  G
Sbjct: 174 ----------PEWNLVAWTAMLTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNG 223

Query: 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM-----LKEGILPDRITF 522
            +     +F  MP  D +SW  M+AAL ++     + EL+++M     L +G+ P+R+TF
Sbjct: 224 HLRYTREIFQRMPERDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTF 283

Query: 523 LTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582
           +T+L AC+  G + EGR+    +    G           ++   R G   +AK V D + 
Sbjct: 284 ITLLDACSFLGALAEGRKIHAAV-AERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMR 342

Query: 583 FKPSAPIWEALLAGCRIHGNIDLGIQ 608
            +     W ++++     G +D  ++
Sbjct: 343 -RRDVISWSSMISAFAQRGRVDEAME 367



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 163/342 (47%), Gaps = 40/342 (11%)

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           ++++Y + G ++ A+ +F++MP   L SW A+LSA+  +G  +EAK+LF+ M+ER+L++W
Sbjct: 29  MLSIYARSGDLSNAKGVFDRMPRWSLGSWTALLSAFALSGHHEEAKTLFDTMQERDLIAW 88

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
           T+M++ LA     E+    F QM          A+   + + A  G +EN R+   Q+  
Sbjct: 89  TIMLTVLATFSNIEDAKYHFDQMPERDL----VAWTAMLAANAERGQMENARETFDQMP- 143

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
              + +L +  +L++ Y R G V+AA  VF++MP  + V+W AM+      G+  RA   
Sbjct: 144 ---ERNLFSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLVAWTAMLTGYSLSGDVVRAKRA 200

Query: 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED--HYARFIDL 564
           ++ M +     D I +  +LSA    G ++  R  F+ M       P  D   +A  +  
Sbjct: 201 FDSMPER----DLIAWTAMLSAYAFNGHLRYTREIFQRM-------PERDLISWATMVAA 249

Query: 565 LCRAGKFSEAKDVIDSLP--------FKPSAPIWEALLAGCRIHGNIDLGIQ----AAEQ 612
           L       E+K++ D +P          P+   +  LL  C   G +  G +     AE+
Sbjct: 250 LVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKIHAAVAER 309

Query: 613 LF--QLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
            F   L+  +A     L N Y   G   DA  V   MR R V
Sbjct: 310 GFDTDLVVSNA-----LVNFYGRCGALGDAKIVFDGMRRRDV 346



 Score = 43.1 bits (100), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 63/117 (53%), Gaps = 3/117 (2%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R +HA +   GF     + N L++ Y +   L  A+ +FD + + D+++ +++I+A++ 
Sbjct: 299 GRKIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQ 358

Query: 94  SDNVKLAREMFNK--TPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKP 147
              V  A E++++  +   + D + + +++ A S++    A+ + FR +  D  V+P
Sbjct: 359 RGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEP 415


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 256/727 (35%), Positives = 412/727 (56%), Gaps = 38/727 (5%)

Query: 64  LKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITA 123
           LK V+A+ L  ++ +   +    +I++ + S ++  A  +FN  P    +T   N  +  
Sbjct: 39  LKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKP--ETHLCNRFLRE 96

Query: 124 YSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGL 183
            S +      + ++  MR   +  D F+F  +L AL+  V+   + +++H    K G   
Sbjct: 97  LSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSR-VKSLVEGLEIHGLAAKLGFDS 155

Query: 184 FTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDA 243
              V   L+ +Y  C           +  AR +FD+M  RD ++W+ M+ GY ++   + 
Sbjct: 156 DPFVQTGLVRMYAAC---------GRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFND 206

Query: 244 AREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ 303
           A    + M                          ++ DE   ++V+SAC  +G    GK 
Sbjct: 207 ALLLFEEMKN----------------------YNVEPDEMMLSTVLSACGRAGNLSYGKM 244

Query: 304 VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV 363
           +H +++       P     + +ALVT+Y  CG ++ A ++F +M  ++LV+  A+++ Y 
Sbjct: 245 IHDFIMENNIVVDPH----LQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYS 300

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
             G I+ A+S+F  M +++L+ W+ MISG A++   +E L LF++M+  G KP       
Sbjct: 301 KLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLS 360

Query: 424 AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
            IT+CA LGAL+  + +H  +  +G+  +L   NALI MYA+CG +E A  +F+ MP  +
Sbjct: 361 VITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKN 420

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFE 543
            +SW  MI+A   HG+   A+  + QM  E I P+ ITF+ VL AC+HAGLV+EGR+ F 
Sbjct: 421 VISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFY 480

Query: 544 TMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNI 603
           +M   + I P   HY   +DL  RA    EA ++++++P  P+  IW +L+A CR+HG I
Sbjct: 481 SMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEI 540

Query: 604 DLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEV 663
           +LG  AA++L +L P H G +V LSN+YA   RW+D  +VRKLM+ +G+ KE GCS  E+
Sbjct: 541 ELGEFAAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFEL 600

Query: 664 DNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHS 723
           +N++H FLV D +H  A  +Y+ L ++V +++ +GY P+T  +L D+E ++K+  +  HS
Sbjct: 601 NNEIHEFLVADRSHKHADEIYEKLYEVVSKLKLVGYSPNTCSILVDLEEEEKKEVVLWHS 660

Query: 724 EKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGK 783
           EKLA+ +GLM+   G+ +R++KNLR+C DCH   K  SKV  REIVVRD  RFHH++DG 
Sbjct: 661 EKLALCYGLMRDGTGSCIRIIKNLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHYKDGV 720

Query: 784 CSCGDYW 790
           CSC DYW
Sbjct: 721 CSCKDYW 727



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 168/350 (48%), Gaps = 42/350 (12%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           S  + +H  ++ +      H+ + L+ +Y     +  A  LF+++   ++VA T ++  Y
Sbjct: 240 SYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGY 299

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
           S    ++ AR +FN+  +  +D V ++AMI+ Y+ + +   A+ LF +M+   +KPD  T
Sbjct: 300 SKLGQIENARSVFNQ--MVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVT 357

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             SV++A A +   + Q   +H  V K+G G    + NALI +Y KC S         + 
Sbjct: 358 MLSVITACAHLGALD-QAKWIHLFVDKNGFGGALPINNALIEMYAKCGS---------LE 407

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            ARR+FD+MP ++ +SWT M++ +  +    +A  F   M +                  
Sbjct: 408 RARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDE----------------- 450

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                 I+ +  T+  V+ AC+++GL   G+++  Y +  E   TP+        +V L+
Sbjct: 451 -----NIEPNGITFVGVLYACSHAGLVEEGRKIF-YSMINEHNITPKHVH--YGCMVDLF 502

Query: 332 WKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLID----EAKSLFE 376
            +   + EA ++   MP   +++ W ++++A    G I+     AK L E
Sbjct: 503 GRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLE 552



 Score = 44.7 bits (104), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 3/165 (1%)

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNAL-ITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
           +L + +Q+HAQ++ S  D S S    L I+  A    ++ A  VFN +P  ++   N  +
Sbjct: 35  SLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPETHLCNRFL 94

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
             L +     + + +YE+M  +G+  DR +F  +L A +    + EG      +    G 
Sbjct: 95  RELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLE-IHGLAAKLGF 153

Query: 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
                     + +    G+ +EA+ + D + F      W  ++ G
Sbjct: 154 DSDPFVQTGLVRMYAACGRIAEARLMFDKM-FHRDVVTWSIMIDG 197


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 266/719 (36%), Positives = 395/719 (54%), Gaps = 87/719 (12%)

Query: 81  IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
           +    +LI  Y     + LAR +FN   +  RD + +N++I   + +     A+ LF  +
Sbjct: 357 LTVSNSLINMYCKLRKIGLARTVFNN--MSERDLISWNSVIAGIAQSDLEVEAVCLFMQL 414

Query: 141 RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVS 200
            R  +KPD++T TSVL A + + E      Q+H   +K+                   V+
Sbjct: 415 LRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNN-----------------VA 457

Query: 201 SPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWN 260
             FVS                       T ++  Y +N  +  A E L G +    VAWN
Sbjct: 458 DSFVS-----------------------TALIDAYSRNRCMKEA-EVLFGRNNFDLVAWN 493

Query: 261 ALISGYV-----HRELKMLMLRIQL----DEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
           A++SGY      H+ L++  L  +     D+FT  +V+  C        GKQVHAY +++
Sbjct: 494 AMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKS 553

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
                                         D+       DL   + IL  YV  G +  A
Sbjct: 554 ----------------------------GYDL-------DLWVSSGILDMYVKCGDMSAA 578

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
           +  F+++   + ++WT +ISG  +NG  E  L +FSQMRL G  P ++  A    + + L
Sbjct: 579 QFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCL 638

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
            ALE GRQ+HA  +     S    G +L+ MYA+CG ++ A C+F  +  ++  +WNAM+
Sbjct: 639 TALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAML 698

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
             L QHG G  A++L++QM   GI PD++TF+ VLSAC+H+GLV E  +Y  +MH  YGI
Sbjct: 699 VGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGI 758

Query: 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611
            P  +HY+   D L RAG   EA+++IDS+  + SA ++  LLA CR+ G+ + G + A 
Sbjct: 759 KPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVAT 818

Query: 612 QLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFL 671
           +L +L P  +  YVLLSNMYA   +WD+    R +M+   VKK+PG SWIEV NK+H+F+
Sbjct: 819 KLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHLFV 878

Query: 672 VDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFG 731
           VDD ++P+ + +YK ++ ++ ++++ GYVP+T F L D+E ++KE AL  HSEKLAVAFG
Sbjct: 879 VDDRSNPQTELIYKKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFG 938

Query: 732 LMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           L+  P    +RV+KNLR+CGDCHNA K++SKV  REIV+RD  RFH F+DG CSCGDYW
Sbjct: 939 LLSTPPSTPIRVIKNLRVCGDCHNAMKYISKVYDREIVLRDANRFHRFKDGICSCGDYW 997



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 158/645 (24%), Positives = 264/645 (40%), Gaps = 139/645 (21%)

Query: 26  RNPITSS---LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIV 82
           R+ I++S   L +  HA +++    P   ++N LI +Y K   L YAR +FD++P+ D+V
Sbjct: 54  RDAISTSDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLV 113

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR 142
           +  +++AAY+ S    +                             N   A  LFR +R+
Sbjct: 114 SWNSILAAYAQSSEGVV----------------------------ENVKEAFLLFRILRQ 145

Query: 143 DDVKPDNFTFTSVLSALALIVEEEKQCM--QMHCTVVKSGTGLFTSVLNALISVYVKCVS 200
           D V     T + +L    L +     C     H    K G      V  AL+++Y+K   
Sbjct: 146 DVVYTSRMTLSPMLK---LCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKF-- 200

Query: 201 SPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV----KNDYLDAAREF--------- 247
                    +   R +F+EMP RD + W  M+  Y+    K + +D +  F         
Sbjct: 201 -------GKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNE 253

Query: 248 --------LDGMSENVG-----------------VAWNALISGYVHRE---------LKM 273
                   + G     G                 ++ N ++SGY+H           + M
Sbjct: 254 ITLRLLSRISGDDSEAGQVKSFENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFMDM 313

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
           +   ++ D+ T+  V++         LG+QVH   L    K   +  L V+N+L+ +Y K
Sbjct: 314 VESDLECDQVTFILVLATAVRLDSLALGQQVHCMAL----KLGLDLMLTVSNSLINMYCK 369

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
             K+  AR +FN M ERDL+SWN++                               I+G+
Sbjct: 370 LRKIGLARTVFNNMSERDLISWNSV-------------------------------IAGI 398

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL-GALENGRQLHAQLVHSGYDSS 452
           AQ+    E + LF Q+   G KP  Y     + + + L   L   +Q+H   + +   + 
Sbjct: 399 AQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVAD 458

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
                ALI  Y+R   ++ A  +F    N D V+WNAM++   Q  +G + +EL+  M K
Sbjct: 459 SFVSTALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHK 517

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH----YARFIDLLCRA 568
           +G   D  T  TVL  C     + +G++    +H  Y I  G D      +  +D+  + 
Sbjct: 518 QGERSDDFTLATVLKTCGFLFAINQGKQ----VHA-YAIKSGYDLDLWVSSGILDMYVKC 572

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
           G  S A+   DS+P  P    W  L++GC  +G  +  +    Q+
Sbjct: 573 GDMSAAQFAFDSIPV-PDDVAWTTLISGCIENGEEERALHVFSQM 616



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 120/324 (37%), Gaps = 88/324 (27%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + VHA+ I SG+     + + ++D+Y K   +  A+  FD IP PD VA TTL      
Sbjct: 543 GKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTL------ 596

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                                      I+    N     A+ +F  MR   V PD FT  
Sbjct: 597 ---------------------------ISGCIENGEEERALHVFSQMRLMGVLPDEFTIA 629

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           ++  A + +   E Q  Q+H   +K                 + C S PFV         
Sbjct: 630 TLAKASSCLTALE-QGRQIHANALK-----------------LNCTSDPFVG-------- 663

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV-HRELK 272
                          T+++  Y K   +D A      +      AWNA++ G   H E K
Sbjct: 664 ---------------TSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGK 708

Query: 273 --------MLMLRIQLDEFTYTSVISACANSGLFRLG-KQVHAYLLRTEAKPTPEFSLPV 323
                   M  L I+ D+ T+  V+SAC++SGL     K + +       KP  E    +
Sbjct: 709 EALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCL 768

Query: 324 NNALVTLYWKCGKVNEARDIFNQM 347
            +AL     + G V EA ++ + M
Sbjct: 769 ADAL----GRAGLVKEAENLIDSM 788


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 269/711 (37%), Positives = 389/711 (54%), Gaps = 70/711 (9%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           ++V   TL+ AY     +  AR +F + P   RD+V YNAM+   S   +   A++LF  
Sbjct: 174 NVVVCNTLLDAYCKHGLLAAARRVFQEMP--HRDSVTYNAMMMGCSKEGSHAEALDLFAA 231

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           MRR  +    FTF++VL+ +A  V +     Q+H  V ++ T     V N+L+  Y KC 
Sbjct: 232 MRRKGLAATRFTFSTVLT-VATGVGDLCLGRQVHGLVARA-TSSNVFVNNSLLDFYSKC- 288

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                     +   +++F EM ERD +S+  M+ GY                      AW
Sbjct: 289 --------DCLDEMKKLFHEMIERDNVSYNVMIAGY----------------------AW 318

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
           N   S  +    +M  L        Y S++S   +     +GKQ+HA L           
Sbjct: 319 NRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQL----------- 367

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
                                  +   +   DLV  NA++  Y   G++D AK+ F    
Sbjct: 368 -----------------------VLLGLSSEDLVG-NALIDMYSKCGMLDAAKTNFINKN 403

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
           ++  +SWT MI+G  QNG  EE L+LF  MR  G  P    F+  I + + L  +  GRQ
Sbjct: 404 DKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQ 463

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           LH+ L+ SG+ SS+ +G+AL+ MY +CG ++ A   F+ MP  +S+SWNA+I+A   +G 
Sbjct: 464 LHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQ 523

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA 559
              AI+++E ML  G  PD +TFL+VLSAC+H GL +E  +YFE M   YGI P ++HY+
Sbjct: 524 AKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYS 583

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
             ID L R G+F + ++++  +PF+    IW ++L  CR HGN DL   AAE+LF +   
Sbjct: 584 CVIDTLGRVGRFDKVQEMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFSMGST 643

Query: 620 HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPE 679
            A  YV+LSN++A  G+W+DAA V+K+MRDRG++KE G SW+EV +KV+ F  +D  +P 
Sbjct: 644 DATPYVILSNIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVEVKHKVYSFSSNDQTNPM 703

Query: 680 AQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGA 739
              +   LE+L  EM K GY PDT   L  ++ D K  +L  HSE+LA+AF L+  P G 
Sbjct: 704 ITEIKDELERLYKEMDKQGYKPDTSCTLQQVDDDIKLESLKYHSERLAIAFALINTPPGT 763

Query: 740 TVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            +RV+KNL  C DCH+A K MSK+V R+I+VRD  RFHHF+DG CSCGDYW
Sbjct: 764 PIRVMKNLSACVDCHSAIKMMSKIVNRDIIVRDSSRFHHFKDGFCSCGDYW 814



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 169/594 (28%), Positives = 264/594 (44%), Gaps = 99/594 (16%)

Query: 39  AHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP-QPDIVARTTLIAAYSASDNV 97
           A M+ +GF P  + +N L+     S +L  AR LFD++P + +  +   +++ YS S  +
Sbjct: 23  ARMVKTGFDPATYRLNLLLHSLISSGRLAQARALFDQMPHRNNAFSLNRMLSGYSRSGQL 82

Query: 98  KLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA--AIELFRDMRRDDVKPDNFTFTSV 155
             A  +F  +P  +RD V +  MI A++      A  A+ LFRDM R+ V PD  T  +V
Sbjct: 83  SAAHHLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVATV 142

Query: 156 L--------SALALIVEEEKQCMQMHCTVVKSGTGLFTS---VLNALISVYVKCVSSPFV 204
           L        +A A+I+        +H   +K   GL  S   V N L+  Y K       
Sbjct: 143 LNLPPASGGTAAAIIIAS------LHPFALK--LGLLHSNVVVCNTLLDAYCK------- 187

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
               L+ AARRVF EMP RD +++  MM G  K      A +    M    G+A      
Sbjct: 188 --HGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRK-GLAAT---- 240

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
                             FT+++V++     G   LG+QVH  + R  +      ++ VN
Sbjct: 241 -----------------RFTFSTVLTVATGVGDLCLGRQVHGLVARATSS-----NVFVN 278

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
           N+L+  Y KC                                 +DE K LF  M ER+ +
Sbjct: 279 NSLLDFYSKCD-------------------------------CLDEMKKLFHEMIERDNV 307

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
           S+ VMI+G A N      L+LF +M+   F      +A  ++    +  +  G+Q+HAQL
Sbjct: 308 SYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQL 367

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
           V  G  S    GNALI MY++CG+++AA   F    +   VSW AMI    Q+G    A+
Sbjct: 368 VLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQQEEAL 427

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY----AR 560
           +L+  M + G+ PDR TF + + A ++  ++  GR+    +H  Y I  G        + 
Sbjct: 428 QLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQ----LHS-YLIRSGHMSSVFSGSA 482

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
            +D+  + G   EA    D +P + S   W A+++    +G     I+  E + 
Sbjct: 483 LLDMYTKCGCLDEALQTFDEMPERNSIS-WNAVISAYAHYGQAKNAIKMFEGML 535



 Score = 45.1 bits (105), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 3/138 (2%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R +H+++I SG        + L+D+Y K   L  A   FDE+P+ + ++   +I+AY+
Sbjct: 460 LGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYA 519

Query: 93  ASDNVKLAREMFNKTPLK--MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPDN 149
                K A +MF          D+V + ++++A SHN      ++ F  M  +  + P  
Sbjct: 520 HYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWK 579

Query: 150 FTFTSVLSALALIVEEEK 167
             ++ V+  L  +   +K
Sbjct: 580 EHYSCVIDTLGRVGRFDK 597


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 263/712 (36%), Positives = 407/712 (57%), Gaps = 52/712 (7%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           LI     S ++K A  +F+K P    D   +  +I+ ++ +     AI+++  +   +V+
Sbjct: 17  LIKTCLNSGDLKRALYLFDKIPEP--DLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVR 74

Query: 147 PDNFTFTSVLSALA----LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSP 202
           PD F   SV  A A    L+V +     ++H   ++ G      + NALI ++ KC    
Sbjct: 75  PDKFVLLSVAKACAASGDLVVAK-----KIHDDAIQFGFNKDLVLGNALIDMFGKC---- 125

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL 262
                  +  AR VFD+M  +D +SWT+M   YV                 N G+    +
Sbjct: 126 -----KFVNGARCVFDDMVVKDVVSWTSMTYCYV-----------------NCGMCRQGI 163

Query: 263 ISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
           +   + RE+ +  +R   +  T +S++ ACA+    +LG++VH ++LR E     E ++ 
Sbjct: 164 L---LFREMGLNGIRA--NSLTVSSILPACAD--YIKLGREVHGFILRNEM----EGNVY 212

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER- 381
           V++ALV +Y     + +AR +F+ M  RD+VSWN +L+AY      +    LF  MR+  
Sbjct: 213 VSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQMRKEG 272

Query: 382 ---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
              N  SW   ISG  QNG  E  L +  +M+  G KP       A+  C  L +L  G+
Sbjct: 273 IKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGCTNLESLRGGK 332

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           ++H  +    +   ++   AL+ +YA+CG +E +  VFNTMP  D V+WN MI A   HG
Sbjct: 333 EIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDVVAWNTMIMANSMHG 392

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
            G  ++ L+ +ML  G+ P+ +TF+ VLS C+H+ L  EG   F +M   + I P  DHY
Sbjct: 393 KGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEGLLVFNSMSSEHSITPDADHY 452

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
           +  +D+L RAG+  EA D I  +P +P+A  W ALL  CR++ N++LG  AA QLF++ P
Sbjct: 453 SCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGALLGACRVYKNVELGTLAASQLFEIEP 512

Query: 619 HHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHP 678
            +AG YVLLSN+     +W +A+ +RK+MRD+G+ K PG SW++V NKV+ F+  D ++ 
Sbjct: 513 DNAGNYVLLSNILVTAKKWVEASEIRKMMRDKGLAKTPGRSWVQVKNKVYSFVTGDKSNE 572

Query: 679 EAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGG 738
           +   +Y++L+++  +MR  GY P+T FVL +++ +Q+E  L +HSE+LAVAFG++   G 
Sbjct: 573 QKDMIYRFLDEIDEKMRLDGYQPNTDFVLQNVDQEQREETLCSHSERLAVAFGILNSSGK 632

Query: 739 ATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            TVRV KNLRICGDCHNA K ++K+VG +I+VRD  RFHHFRDG C+C D+W
Sbjct: 633 TTVRVFKNLRICGDCHNAIKLIAKIVGMQIIVRDSLRFHHFRDGYCTCNDFW 684



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 187/400 (46%), Gaps = 39/400 (9%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ----PDIVARTTLIA 89
           A  +++ ++S   +P + ++  +      S  LV A+ + D+  Q     D+V    LI 
Sbjct: 61  AIDIYSTLLSRNVRPDKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALID 120

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
            +     V  AR +F+   +K  D V + +M   Y +       I LFR+M  + ++ ++
Sbjct: 121 MFGKCKFVNGARCVFDDMVVK--DVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANS 178

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
            T +S+L A A  ++  +   ++H  ++++       V +AL+++Y   +          
Sbjct: 179 LTVSSILPACADYIKLGR---EVHGFILRNEMEGNVYVSSALVNMYASSLG--------- 226

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKN-DYLDAAREFLDGMSENVGV---AWNALISG 265
           +  AR VFD M  RD +SW  M+T Y  N +Y      F     E + +   +WNA ISG
Sbjct: 227 LKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISG 286

Query: 266 YVHR---ELKMLML------RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
            +     EL + +L       I+ +  T  S +  C N    R GK++H Y+ R      
Sbjct: 287 CMQNGQHELALGILCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIE- 345

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
               + +  ALV LY KCG +  +R +FN MP +D+V+WN ++ A    G   E+  LF 
Sbjct: 346 ---DVTITTALVLLYAKCGDLELSRHVFNTMPRKDVVAWNTMIMANSMHGKGGESLILFN 402

Query: 377 AMR----ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
            M     E N +++  ++SG + +   +EGL +F+ M  E
Sbjct: 403 KMLDSGVEPNSVTFIGVLSGCSHSQLADEGLLVFNSMSSE 442



 Score = 75.9 bits (185), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 137/319 (42%), Gaps = 39/319 (12%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R VH  ++ +  +   ++ + L+++Y  SL L  AR +FD +   DIV+   ++ AY 
Sbjct: 194 LGREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYF 253

Query: 93  ASDNVKLAREMFN---KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
            +   +    +F+   K  +K+ +   +NA I+    N     A+ +   M+   +KP+ 
Sbjct: 254 LNKEYERGLGLFHQMRKEGIKL-NQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNR 312

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
            T  S L     + E  +   ++H  V +       ++  AL+ +Y KC           
Sbjct: 313 ITIVSALPGCTNL-ESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGD--------- 362

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +  +R VF+ MP +D ++W TM+               + G      + +N         
Sbjct: 363 LELSRHVFNTMPRKDVVAWNTMIMA-----------NSMHGKGGESLILFN--------- 402

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
             KML   ++ +  T+  V+S C++S L   G  V    + +E   TP+      + +V 
Sbjct: 403 --KMLDSGVEPNSVTFIGVLSGCSHSQLADEGLLVFNS-MSSEHSITPDADH--YSCMVD 457

Query: 330 LYWKCGKVNEARDIFNQMP 348
           +  + G++ EA D   +MP
Sbjct: 458 VLSRAGRLEEAYDFIRKMP 476


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  484 bits (1245), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 262/715 (36%), Positives = 403/715 (56%), Gaps = 81/715 (11%)

Query: 100 AREMFNKTPLK----MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV 155
           A  + +KTP K     R T  +   + + + +++   AI  + +M     +PDNF F +V
Sbjct: 39  ASPLTSKTPPKPTSPSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAV 98

Query: 156 LSALALIVEEEKQCMQMHCTVVKSGTGLFT-SVLNALISVYVKC--VSSPFVSSRSLMGA 212
           L A++ + ++ K   Q+H   VK G G  + +V N L+++Y KC  +     ++ +LM  
Sbjct: 99  LKAVSGL-QDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAM 157

Query: 213 ---------ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
                    ++ +F+   +RD +SW TM++ + ++D    A  F                
Sbjct: 158 YAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFR-------------- 203

Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
                    M++  ++LD  T  SV+ AC++     +GK++HAY+LR        F   V
Sbjct: 204 --------LMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSF---V 252

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
            +ALV +Y  C +V   R +F+ +  R +  WNA++S Y                     
Sbjct: 253 GSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGY--------------------- 291

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQM-RLEGFKPCDYAFAGAITSCA-GLGALENGRQLH 441
                     A+NG  E+ L LF +M ++ G  P     A  + +C   L A+  G+++H
Sbjct: 292 ----------ARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIH 341

Query: 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGA 501
           A  + +   S ++ G+AL+ MYA+CG +  +  VFN MPN + ++WN +I A G HG G 
Sbjct: 342 AYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGE 401

Query: 502 RAIELYEQMLKEG-----ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
            A+EL++ M+ E        P+ +TF+TV +AC+H+GL+ EG   F  M   +G+ P  D
Sbjct: 402 EALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSD 461

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFK-PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
           HYA  +DLL RAG+  EA ++++++P +      W +LL  CRIH N++LG  AA+ L  
Sbjct: 462 HYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLH 521

Query: 616 LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
           L P+ A  YVLLSN+Y++ G W+ A  VRK MR  GVKKEPGCSWIE  ++VH F+  D 
Sbjct: 522 LEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDV 581

Query: 676 AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKL 735
           +HP+++ ++ +LE L  +MRK GYVPDT  VLH+++ D+KE  L  HSEKLA+AFG++  
Sbjct: 582 SHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNT 641

Query: 736 PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           P G T+RV KNLR+C DCH A KF+SK++ REI+VRD +RFHHF++G CSCGDYW
Sbjct: 642 PPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 696



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 180/423 (42%), Gaps = 78/423 (18%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           L+A Y+    V  ++ +F       RD V +N MI+++S +     A+  FR M  + V+
Sbjct: 154 LMAMYAKLGRVDDSKALFES--FVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVE 211

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS-VLNALISVYVKCVSSPFVS 205
            D  T  SVL A + + E      ++H  V+++   +  S V +AL+ +Y  C       
Sbjct: 212 LDGVTIASVLPACSHL-ERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQ----- 265

Query: 206 SRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265
               + + RRVFD +  R    W  M++GY +N   + A      M +  G+  N     
Sbjct: 266 ----VESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTT--- 318

Query: 266 YVHRELKMLMLRIQLDEFTYTSVISACANS-GLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
                             T  SV+ AC +S      GK++HAY +R          + V 
Sbjct: 319 ------------------TMASVMPACVHSLAAIAKGKEIHAYAIRNMLAS----DITVG 356

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
           +ALV +Y KCG +N +R +FN+MP +++++WN                            
Sbjct: 357 SALVDMYAKCGCLNLSRRVFNEMPNKNVITWN---------------------------- 388

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEG-----FKPCDYAFAGAITSCAGLGALENGRQ 439
              V+I     +G GEE L+LF  M  E       KP +  F     +C+  G +  G  
Sbjct: 389 ---VLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLN 445

Query: 440 LHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSV-SWNAMIAALGQ 496
           L  ++ H  G + +      ++ +  R G +E A  + NTMP   D V +W++++ A   
Sbjct: 446 LFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRI 505

Query: 497 HGN 499
           H N
Sbjct: 506 HQN 508


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  484 bits (1245), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 264/788 (33%), Positives = 414/788 (52%), Gaps = 111/788 (14%)

Query: 7   DYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKL 66
           D ++ +   +   L++C     +     + +H  +I++ F      +  ++++Y K  ++
Sbjct: 141 DDVKPVVYNFTYLLKVCGDNADLKR--GKEIHGQLITNSFAANVFAMTGVVNMYAKCRQI 198

Query: 67  VYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSH 126
             A  +FD +P+ D+V+  T+IA                                  +S 
Sbjct: 199 DDAYKMFDRMPERDLVSWNTIIA---------------------------------GFSQ 225

Query: 127 NSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA----LIVEEEKQCMQMHCTVVKSGTG 182
           N     A+EL   M+ +  +PD+ T  +VL A A    L+V +      +H   +++G  
Sbjct: 226 NGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGK-----SIHGYAIRAGFA 280

Query: 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLD 242
              ++  AL  +Y KC S         +  AR +FD M ++  +SW +MM GYV+N   +
Sbjct: 281 KLVNISTALADMYSKCGS---------VETARLIFDGMDQKTVVSWNSMMDGYVQNGEPE 331

Query: 243 AAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGK 302
            A    +                      KML   I     T    + ACA+ G    GK
Sbjct: 332 KAIAVFE----------------------KMLEEGIDPTGVTIMEALHACADLGDLERGK 369

Query: 303 QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY 362
            VH ++ +          + V N+L+++Y KC +V+ A DIFN +  R  VSWNA++  Y
Sbjct: 370 FVHKFVDQLNLGS----DISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGY 425

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
              G + EA                               L  FS+M+  G KP  +   
Sbjct: 426 AQNGRVSEA-------------------------------LNCFSEMKSLGMKPDSFTMV 454

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
             I + A L    + + +H  ++ S  D ++    AL+ MY++CG +  A  +F+ + + 
Sbjct: 455 SVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDR 514

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
             ++WNAMI   G HG G  A++L+++M K  + P+ IT+L+V+SAC+H+GLV EG R+F
Sbjct: 515 HVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHF 574

Query: 543 ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
           ++M   YG+ P  DHY   +DLL RAG+  EA D I+++P  P   ++ A    C+IH N
Sbjct: 575 KSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKN 634

Query: 603 IDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIE 662
           I++G +AA++LF+L P   G +VLL+N+YA+  +W   A VRK M  +G+KK PGCS +E
Sbjct: 635 IEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVE 694

Query: 663 VDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTH 722
           + N+VH F    T HP+++ +Y +LE+LV E++  GYVPDT  +L D+E D +E  L++H
Sbjct: 695 LRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLIL-DVEDDVQEQLLNSH 753

Query: 723 SEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDG 782
           SEKLA+AFGL+    G T+ V KNLR+CGDCHNA K++S V GREI+VRD +RFHHF++G
Sbjct: 754 SEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNG 813

Query: 783 KCSCGDYW 790
            CSCGDYW
Sbjct: 814 ICSCGDYW 821



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 155/582 (26%), Positives = 260/582 (44%), Gaps = 93/582 (15%)

Query: 84  RTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD 143
           +T L++ +S   ++  A  +F   P+  +    Y+ M+  Y+ NS+   A+     MR D
Sbjct: 84  QTKLVSLFSKYGSINEAARVFE--PIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYD 141

Query: 144 DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
           DVKP  + FT +L        + K+  ++H  ++ +        +  ++++Y KC     
Sbjct: 142 DVKPVVYNFTYLLKVCG-DNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQ--- 197

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
                 +  A ++FD MPERD +SW T++ G+ +N +   A E +               
Sbjct: 198 ------IDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELV--------------- 236

Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
                  L+M     + D  T  +V+ A A+ GL  +GK +H Y +R        F+  V
Sbjct: 237 -------LRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRA------GFAKLV 283

Query: 324 N--NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
           N   AL  +Y KCG V  AR IF+ M ++ +VSWN+++  YV  G  ++A ++FE M E 
Sbjct: 284 NISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLE- 342

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
                                         EG  P       A+ +CA LG LE G+ +H
Sbjct: 343 ------------------------------EGIDPTGVTIMEALHACADLGDLERGKFVH 372

Query: 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGA 501
             +      S +S  N+LI+MY++C  V+ A+ +FN +     VSWNAMI    Q+G  +
Sbjct: 373 KFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVS 432

Query: 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH---- 557
            A+  + +M   G+ PD  T ++V+ A     +     R+ + +HG   I    D     
Sbjct: 433 EALNCFSEMKSLGMKPDSFTMVSVIPALAELSVT----RHAKWIHGLI-IRSCLDKNIFV 487

Query: 558 YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
               +D+  + G    A+ + D +  +     W A++ G   HG   LG +AA  LF  M
Sbjct: 488 TTALVDMYSKCGAIHMARKLFDMISDR-HVITWNAMIDGYGTHG---LG-RAALDLFDKM 542

Query: 618 PHHAG-----TYVLLSNMYANLGRWDDAARVRKLMR-DRGVK 653
              A      TY+ + +  ++ G  D+  R  K M+ D G++
Sbjct: 543 KKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLE 584


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  484 bits (1245), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 260/685 (37%), Positives = 387/685 (56%), Gaps = 57/685 (8%)

Query: 117 YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTV 176
           + ++I  Y+ +   H ++  F  M    + PD+  F SVL + AL+++       +H  +
Sbjct: 74  WKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLG-ESLHGYI 132

Query: 177 VKSGTGLFTSVLNALISVYVKCVSSPFV--SSRSLMGAARRVFDEMPERDELSWTTMMTG 234
           ++ G        NAL+++Y K     F+  S R  +GA   VFDEM ER      ++ T 
Sbjct: 133 IRVGLDFDLYTGNALMNMYSKL---RFLEESGRQRLGAG-EVFDEMTERTR----SVRTV 184

Query: 235 YVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLR---------IQLDEFTY 285
            V ++  D+ R+  + M E   V+WN +I+G     L    LR         ++ D FT 
Sbjct: 185 SVLSE--DSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTL 242

Query: 286 TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFN 345
           +SV+   A +     GK++H   +R       +  + V ++L+ +Y KC +V ++  +F 
Sbjct: 243 SSVLPLIAENVDISRGKEIHGCSIRQGL----DADIYVASSLIDMYAKCTRVADSCRVFT 298

Query: 346 QMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKL 405
            + ERD +SWN+I++  V  GL D                               EGL+ 
Sbjct: 299 LLTERDGISWNSIIAGCVQNGLFD-------------------------------EGLRF 327

Query: 406 FSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465
           F QM +   KP  Y+F+  + +CA L  L  G+QLH  +  +G+D ++   ++L+ MYA+
Sbjct: 328 FRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAK 387

Query: 466 CGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTV 525
           CG +  A  +F+ M   D VSW AMI     HG    AIEL+EQM  EGI P+ + F+ V
Sbjct: 388 CGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAV 447

Query: 526 LSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP 585
           L+AC+H GLV E  +YF +M   +GI PG +HYA   DLL RAG+  EA D I  +   P
Sbjct: 448 LTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGP 507

Query: 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645
           +  IW  LL+ CR+H NID+  + A ++ ++ P++ G Y+LL+N+Y+   RW +AA+ R 
Sbjct: 508 TGSIWATLLSACRVHXNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRA 567

Query: 646 LMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKF 705
            MR  G++K P CSWIEV NKV+ F+  D +HP  + + + +E LV  M K GYVPDT  
Sbjct: 568 SMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSE 627

Query: 706 VLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVG 765
           V HD+E +QK+Y + +HSE+LA+ FG++  P G T+RV KNLR+C DCH A KF+SK+VG
Sbjct: 628 VHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVG 687

Query: 766 REIVVRDGKRFHHFRDGKCSCGDYW 790
           REIVVRD  RFHHF++G CSCGDYW
Sbjct: 688 REIVVRDNSRFHHFKNGTCSCGDYW 712



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 199/426 (46%), Gaps = 44/426 (10%)

Query: 256 GVAWNALISGYV-----HRELK----MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
            +AW ++I  Y      H+ L     ML   +  D   + SV+ +CA      LG+ +H 
Sbjct: 71  ALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHG 130

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE-------ARDIFNQMPERDL-VSWNAI 358
           Y++R       +F L   NAL+ +Y K   + E       A ++F++M ER   V   ++
Sbjct: 131 YIIRVGL----DFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSV 186

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
           LS        D  + +FE M E++L+SW  +I+G A+NG  EE L++  +M     KP  
Sbjct: 187 LSE-------DSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDS 239

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478
           +  +  +   A    +  G+++H   +  G D+ +   ++LI MYA+C  V  +  VF  
Sbjct: 240 FTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTL 299

Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG 538
           +   D +SWN++IA   Q+G     +  + QML   I P   +F +++ AC H   +  G
Sbjct: 300 LTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLG 359

Query: 539 RRYFETMHGPYGIPPGEDH----YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
           ++    +HG Y    G D      +  +D+  + G    AK + D +  +     W A++
Sbjct: 360 KQ----LHG-YITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVS-WTAMI 413

Query: 595 AGCRIHGNIDLGIQAAEQLFQ--LMPHHAGTYVLLSNMYANLGRWDDAAR-VRKLMRDRG 651
            GC +HG     I+  EQ+    + P+H     +L+   ++ G  D+A +    + RD G
Sbjct: 414 MGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTAC-SHGGLVDEAWKYFNSMTRDFG 472

Query: 652 VKKEPG 657
           +   PG
Sbjct: 473 IA--PG 476



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 122/492 (24%), Positives = 216/492 (43%), Gaps = 88/492 (17%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCK-------SLKLVYARTLFDEIPQPDIVAR 84
           +L  S+H ++I  G     +  N L+++Y K         + + A  +FDE+ +     R
Sbjct: 123 NLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVR 182

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           T  + +    D+V   R++F   P K  D V +N +I   + N      + + R+M   +
Sbjct: 183 TVSVLS---EDSV---RKIFEMMPEK--DLVSWNTIIAGNARNGLYEETLRMIREMGGAN 234

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           +KPD+FT +SVL  +A  V+  +   ++H   ++ G      V ++LI +Y KC      
Sbjct: 235 LKPDSFTLSSVLPLIAENVDISRG-KEIHGCSIRQGLDADIYVASSLIDMYAKC------ 287

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
              + +  + RVF  + ERD +SW +++ G V+N   D    F                 
Sbjct: 288 ---TRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFR--------------- 329

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
                  +MLM +I+   ++++S++ ACA+     LGKQ+H Y+ R         ++ + 
Sbjct: 330 -------QMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDE----NIFIA 378

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
           ++LV +Y KCG +  A+ IF++M  RD+VSW                             
Sbjct: 379 SSLVDMYAKCGNIRTAKQIFDRMRLRDMVSW----------------------------- 409

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
             T MI G A +G   + ++LF QM  EG KP   AF   +T+C+  G ++   +    +
Sbjct: 410 --TAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSM 467

Query: 445 VHS-GYDSSLSAGNALITMYARCGVVEAAN---CVFNTMPNVDSVSWNAMIAALGQHGNG 500
               G    +    A+  +  R G +E A    C  +  P      W  +++A   H N 
Sbjct: 468 TRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPT--GSIWATLLSACRVHXNI 525

Query: 501 ARAIELYEQMLK 512
             A ++  ++L+
Sbjct: 526 DMAEKVANRILE 537



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 110/289 (38%), Gaps = 42/289 (14%)

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
           Y    L+ ++  LF  +     L+W  +I     +G   + L  F  M   G  P    F
Sbjct: 50  YSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVF 109

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE----------- 470
              + SCA L  L  G  LH  ++  G D  L  GNAL+ MY++   +E           
Sbjct: 110 PSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGE 169

Query: 471 ---------------------AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
                                +   +F  MP  D VSWN +IA   ++G     + +  +
Sbjct: 170 VFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIRE 229

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH----YARFIDLL 565
           M    + PD  T  +VL        +  G+     +HG   I  G D      +  ID+ 
Sbjct: 230 MGGANLKPDSFTLSSVLPLIAENVDISRGKE----IHG-CSIRQGLDADIYVASSLIDMY 284

Query: 566 CRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
            +  + +++  V   L  +     W +++AGC  +G  D G++   Q+ 
Sbjct: 285 AKCTRVADSCRVFTLLTERDGIS-WNSIIAGCVQNGLFDEGLRFFRQML 332



 Score = 47.8 bits (112), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 33/129 (25%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           T  L + +H ++  +GF     I + L+D+Y K   +  A+ +FD +             
Sbjct: 355 TLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRM------------- 401

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
                               ++RD V + AMI   + +     AIELF  M  + +KP++
Sbjct: 402 --------------------RLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNH 441

Query: 150 FTFTSVLSA 158
             F +VL+A
Sbjct: 442 VAFMAVLTA 450


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 260/713 (36%), Positives = 391/713 (54%), Gaps = 74/713 (10%)

Query: 79  PDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFY-NAMITAYSHNSNGHAAIELF 137
           P   ++     A   S ++  AR +FN+ P     T F  N++I  Y++ +    AI  +
Sbjct: 72  PFSASKIVAFCALHDSGSLPYARLVFNQIP---NPTTFTCNSIIRGYTNKNLPRQAILFY 128

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           + M    + PD FTF S+  +  ++ E +    Q+HC   K G      + N L+++Y  
Sbjct: 129 QLMMLQGLDPDRFTFPSLFKSCGVLCEGK----QLHCHSTKLGFASDAYIQNTLMNMYSN 184

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C           + +AR+VFD+M  +  +SW TM+  Y + D    A +           
Sbjct: 185 C---------GCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFR-------- 227

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                         +M +  ++ +E T  +V++ACA S      KQVH Y+  T      
Sbjct: 228 --------------RMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIG--- 270

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
            F   + +AL+ +Y KCG    ARD+FN+MPE++L  WN +++ +V     +EA      
Sbjct: 271 -FHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEA------ 323

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
                                    L LF++M+L G K      A  + +C  LGALE G
Sbjct: 324 -------------------------LSLFNEMQLSGVKGDKVTMASLLIACTHLGALELG 358

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           + LH  +     +  ++ G AL+ MYA+CG +E+A  VF  MP  D ++W A+I  L   
Sbjct: 359 KWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMC 418

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
           G G +A+EL+ +M    + PD ITF+ VL+AC+HAGLV EG  YF +M   YGI P  +H
Sbjct: 419 GQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEH 478

Query: 558 YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           Y   +D+L RAG+ +EA+D+I ++P  P   +   LL+ CRIHGN+ +  +AA+QL +L 
Sbjct: 479 YGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELD 538

Query: 618 PHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAH 677
           P + GTYVLLSN+Y+++  W+ A ++R+LM +R +KK PGCS IEV   VH F+  D +H
Sbjct: 539 PKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSH 598

Query: 678 PEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPG 737
           P++  +Y+ L+ ++  ++  GYVPD   VL DM+  +KE  LS HSEKLA+AFGL+    
Sbjct: 599 PQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTP 658

Query: 738 GATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           G  +RV+KNLR+C DCH+A KF+S+V  REI+VRD  RFHHF  G CSC D+W
Sbjct: 659 GTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 711



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 143/546 (26%), Positives = 221/546 (40%), Gaps = 154/546 (28%)

Query: 1   MMMKNADYIR-TLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDI 59
           MM++  D  R T  + + S   LC+          + +H H    GF    +I N L+++
Sbjct: 131 MMLQGLDPDRFTFPSLFKSCGVLCE---------GKQLHCHSTKLGFASDAYIQNTLMNM 181

Query: 60  YCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNA 119
           Y     LV AR +FD+                           M NK+       V +  
Sbjct: 182 YSNCGCLVSARKVFDK---------------------------MVNKS------VVSWAT 208

Query: 120 MITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKS 179
           MI AY+     H AI+LFR M    VKP+  T  +VL+A A   + E    Q+H  + ++
Sbjct: 209 MIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETA-KQVHKYIDET 267

Query: 180 GTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND 239
           G G  T + +AL+ VY KC   P          AR +F++MPE++   W  M+ G+V++ 
Sbjct: 268 GIGFHTVLTSALMDVYCKCGCYPL---------ARDLFNKMPEKNLFCWNIMINGHVEDS 318

Query: 240 YLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFR 299
             + A    + M           +SG            ++ D+ T  S++ AC + G   
Sbjct: 319 DYEEALSLFNEMQ----------LSG------------VKGDKVTMASLLIACTHLGALE 356

Query: 300 LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAIL 359
           LGK +H Y+     K   E  + +  ALV +Y KCG +  A  +F +MPE+D+++W    
Sbjct: 357 LGKWLHVYI----EKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTW---- 408

Query: 360 SAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY 419
                                      T +I GLA  G G + L+LF +M++   KP   
Sbjct: 409 ---------------------------TALIVGLAMCGQGLKALELFHEMQMSEVKPDAI 441

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
            F G + +C+           HA LV+ G                           FN+M
Sbjct: 442 TFVGVLAACS-----------HAGLVNEGI------------------------AYFNSM 466

Query: 480 PNVDSVS-----WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN-HAG 533
           PN   +      +  M+  LG+ G  A A +L + M    + PD    + +LSAC  H  
Sbjct: 467 PNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNM---PMAPDYFVLVGLLSACRIHGN 523

Query: 534 LVKEGR 539
           LV   R
Sbjct: 524 LVVAER 529



 Score = 49.3 bits (116), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 8/119 (6%)

Query: 424 AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA--RCGVVEAANCVFNTMPN 481
           ++  C  +  L   +Q+HAQ++ +       + + ++   A    G +  A  VFN +PN
Sbjct: 46  SLEKCTTMSQL---KQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPN 102

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
             + + N++I          +AI  Y+ M+ +G+ PDR TF ++  +C   G++ EG++
Sbjct: 103 PTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC---GVLCEGKQ 158


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 275/770 (35%), Positives = 405/770 (52%), Gaps = 92/770 (11%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSL--KLVYARTLFDEIPQPDIVARTTLIAAYS 92
           + +H+ +I +G       +++LI+    S    L YA +LF  I  P+            
Sbjct: 45  KQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPN------------ 92

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                 V +N MI   S + +   A+E +  M     +P+ +TF
Sbjct: 93  ---------------------HVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTF 131

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            S+  +   I     +  Q+H  V+K G      V  +LI++Y +            +  
Sbjct: 132 PSIFKSCTKI-RGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQ---------NGELVN 181

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL- 271
           AR VFD+   RD +S+T ++TGY    +LD ARE  D +     V+WNA+ISGY      
Sbjct: 182 ARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRV 241

Query: 272 --------KMLMLRIQLDEFTYTSVISACANSGL-FRLGKQVHAYLLRTEAKPTPEFSLP 322
                   +M   ++  +  T  SV+SACA SG   +LG  V +++         +  L 
Sbjct: 242 EEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWI--------EDRGLG 293

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
            N  LV                           N ++  YV  G ++EA +LFE ++++N
Sbjct: 294 SNIRLV---------------------------NGLIDMYVKCGDLEEASNLFEKIQDKN 326

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
           ++SW VMI G       +E L LF +M      P D  F   + +CA LGAL+ G+ +HA
Sbjct: 327 VVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHA 386

Query: 443 QLVHS--GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
            +  +     ++++   +LI MYA+CG +  A  +F+ M      +WNAMI+    HG+ 
Sbjct: 387 YVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHT 446

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
             A+ L+ +M  EG +PD ITF+ VL+AC HAGL+  GRRYF +M   Y + P   HY  
Sbjct: 447 DTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGC 506

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
            IDL  RAG F EA+ ++ ++  KP   IW +LL  CRIH  I+L    A+ LF+L P +
Sbjct: 507 MIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPEN 566

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEA 680
              YVLLSN+YA  GRW+D A++R  + D  +KK PGCS IEVD+ VH FLV D  HP++
Sbjct: 567 PSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQS 626

Query: 681 QAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT 740
             +YK L+++ + + K G+VPDT  VL+DM+ + KE  LS HSEKLA+AFGL+    G T
Sbjct: 627 NEIYKMLDEIDMRLEKAGFVPDTSEVLYDMDEEWKEGVLSHHSEKLAIAFGLISTKPGTT 686

Query: 741 VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +R++KNLR+CG+CH+A K +SK+  REI+ RD  RFHHF+DG CSC DYW
Sbjct: 687 IRIMKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCKDYW 736



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 136/321 (42%), Gaps = 38/321 (11%)

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVS------AG 366
           + P+P + L  ++  +TL   C  +   + I +Q+ +  L + +  LS  +        G
Sbjct: 17  SDPSPPYKLVHDHPSLTLLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHG 76

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
            +  A SLF+ +R  N + W  MI GL+ +      L+ +  M   G +P +Y F     
Sbjct: 77  DLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFK 136

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC-------------------- 466
           SC  +     G+Q+HA ++  G + +     +LI MYA+                     
Sbjct: 137 SCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVS 196

Query: 467 -----------GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI 515
                      G ++ A  +F+ +P  D VSWNAMI+   Q G    A+  +E+M +  +
Sbjct: 197 FTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKV 256

Query: 516 LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAK 575
            P+  T L+VLSAC  +G   +   +  +     G+          ID+  + G   EA 
Sbjct: 257 TPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEAS 316

Query: 576 DVIDSLPFKPSAPIWEALLAG 596
           ++ + +  K +   W  ++ G
Sbjct: 317 NLFEKIQDK-NVVSWNVMIGG 336


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 254/606 (41%), Positives = 359/606 (59%), Gaps = 75/606 (12%)

Query: 187 VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAARE 246
           ++N LI++YVK           L+  A+ VFD+MP+R+ +SWTTM++ Y      D A E
Sbjct: 2   LINILINMYVKF---------GLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALE 52

Query: 247 FLDGMSENVGVAWNALISGYVHRELKMLMLR--IQLDEFTYTSVISACANSGLFRLGKQV 304
           FL                        +LMLR  ++ + FTY+SV+ AC   GLF L +Q+
Sbjct: 53  FL------------------------VLMLREGVRPNMFTYSSVLRAC--DGLFNL-RQL 85

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVS 364
           H  ++                          K+    D+F +         +A++  Y  
Sbjct: 86  HCCII--------------------------KIGLDSDVFVR---------SALIDVYSR 110

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
            G ++ A  +F+ M   +L+ W+ +I+G AQN  G+E L+LF +M+  GF          
Sbjct: 111 WGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSV 170

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           + +C GL  LE GRQ+H  ++   YD  L   NAL+ MY +CG +E AN VF  M   D 
Sbjct: 171 LRACTGLALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDV 228

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
           +SW+ MIA L Q+G    A++L+E M   GI P+ +T + VL AC+HAGLV+EG  YF +
Sbjct: 229 ISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHS 288

Query: 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
           M   +GI PG +HY   IDLL RAG+ SEA D+I+ +  +P A  W ALL  CR+H N+D
Sbjct: 289 MKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVD 348

Query: 605 LGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVD 664
           + I AA+Q+ +L P  AGTYVLLSN+YAN  RW+D A VR+ M +RG+KKEPGCSWIEV 
Sbjct: 349 VAIHAAKQILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVS 408

Query: 665 NKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSE 724
            ++H F++ D +HP+ + +   L QL+ ++  +GYVPDT FVL D+E +Q + +L  HSE
Sbjct: 409 KQIHAFILGDRSHPQIREINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQMQDSLRYHSE 468

Query: 725 KLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKC 784
           KLA+ FGLM LP G T+R+ KNLRICGDCH   K ++K+  R IV+RD  R+HHF+DG C
Sbjct: 469 KLAIVFGLMSLPRGQTIRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLC 528

Query: 785 SCGDYW 790
           SCGD+W
Sbjct: 529 SCGDFW 534



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 184/415 (44%), Gaps = 76/415 (18%)

Query: 100 AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL 159
           A+++F+K P   R+ V +  MI+AYS       A+E    M R+ V+P+ FT++SVL A 
Sbjct: 19  AQDVFDKMP--DRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPNMFTYSSVLRAC 76

Query: 160 ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDE 219
             +        Q+HC ++K G      V +ALI VY         S    +  A RVFDE
Sbjct: 77  DGLFNLR----QLHCCIIKIGLDSDVFVRSALIDVY---------SRWGELENALRVFDE 123

Query: 220 MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQ 279
           M   D + W++++ G+ +N   D A      M            +G++ ++         
Sbjct: 124 MVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKR----------AGFLAQQT-------- 165

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
               T TSV+ AC    L  LG+QVH ++L+ +        L +NNAL+ +Y KCG + +
Sbjct: 166 ----TLTSVLRACTGLALLELGRQVHVHVLKYDQ------DLILNNALLDMYCKCGSLED 215

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
           A  +F +M E+D++SW+ +++     G   EA                            
Sbjct: 216 ANAVFVRMVEKDVISWSTMIAGLAQNGYSKEA---------------------------- 247

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG-RQLHAQLVHSGYDSSLSAGNA 458
              LKLF  M++ G KP      G + +C+  G +E G    H+     G D        
Sbjct: 248 ---LKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGC 304

Query: 459 LITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           +I +  R G +  A  + N M    D+V+W A++ A   H N   AI   +Q+L+
Sbjct: 305 MIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILR 359



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 148/351 (42%), Gaps = 84/351 (23%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y+S L+ CD    +     R +H  +I  G      + + LID+Y +  +L  A  +FDE
Sbjct: 69  YSSVLRACDGLFNL-----RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDE 123

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +   D+V  +++IA                                  ++ NS+G  A+ 
Sbjct: 124 MVTGDLVVWSSIIA---------------------------------GFAQNSDGDEALR 150

Query: 136 LFRDMRRDDVKPDNFTFTSVLSA---LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           LF+ M+R        T TSVL A   LAL+    +   Q+H  V+K    L  +  NAL+
Sbjct: 151 LFKRMKRAGFLAQQTTLTSVLRACTGLALL----ELGRQVHVHVLKYDQDLILN--NALL 204

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
            +Y KC S         +  A  VF  M E+D +SW+TM+ G  +N Y   A +  + M 
Sbjct: 205 DMYCKCGS---------LEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMK 255

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG-KQVHAYLLRT 311
                                 +L I+ +  T   V+ AC+++GL   G    H+     
Sbjct: 256 ----------------------VLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELF 293

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
              P  E        ++ L  + G+++EA D+ N+M  E D V+W A+L+A
Sbjct: 294 GIDPGREHY----GCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNA 340


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 291/878 (33%), Positives = 436/878 (49%), Gaps = 158/878 (17%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           + S + ++  + +  G +    +   L++IY K  ++  AR LFD +P  D+V    ++ 
Sbjct: 137 SPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMK 196

Query: 90  AY---SASDNVKLAREMFNKTPLKM-------------RDTVF----------------- 116
           AY    A D V      F+++ L+              + TVF                 
Sbjct: 197 AYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVC 256

Query: 117 --------YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQ 168
                   +N  +++Y     G  A++ FRDM +  V  D+ T+  +LS +A +   E  
Sbjct: 257 DDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELG 316

Query: 169 CMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSW 228
             Q+H  VV+ G   F SV N+ I++YVK  S  +         ARR+F +M E D +S 
Sbjct: 317 -KQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNY---------ARRMFGQMKEVDLIS- 365

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLD------- 281
                                         WN +ISG     L+   LR+ +D       
Sbjct: 366 ------------------------------WNTVISGCARSGLEECSLRLFIDLLRSGLL 395

Query: 282 --EFTYTSVISACAN-SGLFRLGKQVHAYLLRT-----------------------EAK- 314
             +FT TSV+ AC++    + +G+QVH   L+                        EA+ 
Sbjct: 396 PDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAEL 455

Query: 315 ---PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER--------------------- 350
                  F L   NA++  +       EA  +F+ M ER                     
Sbjct: 456 LFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVR 515

Query: 351 ------------------DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
                             DL   + IL  Y+  G +  A+ +F  +   + ++WT +ISG
Sbjct: 516 LQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISG 575

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
             +NG  E+ L  + QMRL G +P +Y FA  + +C+ L ALE G+Q+HA ++       
Sbjct: 576 CVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFD 635

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
                +L+ MYA+CG +E A  +F  M       WNAMI  L QHGN   A+  + +M  
Sbjct: 636 PFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKS 695

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
            G+ PDR+TF+ VLSAC+H+GL  +  + F++M   YG+ P  +HY+  +D L RAG   
Sbjct: 696 RGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQ 755

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632
           EA+ V+ S+PF+ SA ++  LL  CR+ G+ + G + AE+LF + P  +  YVLLSN+YA
Sbjct: 756 EAEKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYA 815

Query: 633 NLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVL 692
              +W++A   R +M+   VKKEPG SWI++ NKVH+F+  D +H E   +Y  +E ++ 
Sbjct: 816 AANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMK 875

Query: 693 EMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGD 752
            +++ GYVPDT+F L D+E + KE ALS HSEKLA+A+GLMK P   T+RV+KNLR+CGD
Sbjct: 876 RIKEEGYVPDTEFALVDIEEEDKESALSYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGD 935

Query: 753 CHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           CHNA K++S V  REIV+RD  RFHHFR G CSCGDYW
Sbjct: 936 CHNAIKYISNVFQREIVLRDANRFHHFRSGICSCGDYW 973



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 157/633 (24%), Positives = 245/633 (38%), Gaps = 147/633 (23%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L +  HA +++SG  P  ++ N LI +Y K        +LF                   
Sbjct: 31  LGKRTHAVIVTSGLNPDRYVTNNLITMYAK------CGSLFS------------------ 66

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHN------SNGHAAIELFRDMRRDDVK 146
                  AR++F+ TP   RD V YNA++ AY+H          H A  +FR +R+  + 
Sbjct: 67  -------ARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVML 119

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
               T  S L  L L+         +    VK G      V  AL+++Y K     F   
Sbjct: 120 TTRHTL-SPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAK-----FQRI 173

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLD-------------------AAREF 247
           R     AR +FD MP RD + W  MM  YV+    D                   + R  
Sbjct: 174 RE----ARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTI 229

Query: 248 LDGMSENV------------------------GVAWNALISGYVHRE---------LKML 274
           L G+ +                             WN  +S Y+              M+
Sbjct: 230 LMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMI 289

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
             R+  D  TY  ++S  A+     LGKQ+H  ++R       +F + V N+ + +Y K 
Sbjct: 290 KSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRF---GWDQF-VSVANSAINMYVKA 345

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
           G VN AR +F QM E DL+SWN +                               ISG A
Sbjct: 346 GSVNYARRMFGQMKEVDLISWNTV-------------------------------ISGCA 374

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL-GALENGRQLHAQLVHSGYDSSL 453
           ++G  E  L+LF  +   G  P  +     + +C+ L  +   GRQ+H   + +G     
Sbjct: 375 RSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDS 434

Query: 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE 513
               ALI +Y++ G +E A  +F+     D  SWNAM+       N   A+ L+  M + 
Sbjct: 435 FVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHER 494

Query: 514 GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI-----DLLCRA 568
           G   D+ITF     A      +++G++    +H    +     HY  F+     D+  + 
Sbjct: 495 GEKADQITFANAAKAAGCLVRLQQGKQ----IHAV--VIKMRFHYDLFVISGILDMYLKC 548

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
           G+   A+ V + +P  P    W  +++GC  +G
Sbjct: 549 GEMKSARKVFNQIP-SPDDVAWTTVISGCVENG 580


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 273/826 (33%), Positives = 418/826 (50%), Gaps = 102/826 (12%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           +L   + A ++ +GF P     N +I    +  +L  AR L D++P  +  +   +I+ Y
Sbjct: 25  TLQTCIDARIVKTGFDPITSRFNFMIKDLSERGQLCQARQLLDQMPNRNSFSIDIIISGY 84

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
             S N+ +AR +F+ T    R  V +  MI AYS ++    A +LF +M R   +PD  T
Sbjct: 85  VKSGNLTVARRIFDDT--DERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVT 142

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           + ++L+    + E  K+  Q H  +VK G  L   V N L+  Y K            + 
Sbjct: 143 YITLLTGCNDL-EVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGG---------LD 192

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
           +ARR+F EM   D +S+  M+TGY  N   + A E                        +
Sbjct: 193 SARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELF----------------------V 230

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA------------------ 313
           +M  L  +  +FT+ +VISA         G+Q+H ++++T                    
Sbjct: 231 EMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHD 290

Query: 314 ---------KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ------------------ 346
                       PE      N ++T Y   GKV E+ D+F +                  
Sbjct: 291 CVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTMLS 350

Query: 347 ---------------------MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
                                M + D    N+++  Y   G  +EA  +F  +  R+ + 
Sbjct: 351 IAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEADRIFLRLSSRSTVP 410

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
           WT MIS   Q G  E GLKLF +MR          FA  + + A L ++  G+QLH+ ++
Sbjct: 411 WTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKASANLASILLGKQLHSCVI 470

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIE 505
            SG+  ++ +G AL+ MYA C  ++ A   F  M   + V+WNA+++A  Q+G+G   ++
Sbjct: 471 RSGF-MNVYSGCALLDMYANCASIKDAIKTFEEMSERNVVTWNALLSAYAQNGDGKGTLK 529

Query: 506 LYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLL 565
            +E+M+  G  PD ++FL +L+AC+H  LV+EG +YF  M G Y + P  +HY   +D L
Sbjct: 530 SFEEMIMSGYQPDSVSFLCILTACSHCRLVEEGLKYFNDMSGVYNLAPKREHYTAMVDAL 589

Query: 566 CRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL-MPHHAGTY 624
           CR+G+F EA+ ++  +PF+P   +W ++L  CRIH N  L  +AA QLF + +   A  Y
Sbjct: 590 CRSGRFDEAEKLMGQMPFEPDEIVWTSVLNSCRIHKNYALARKAAGQLFNMKVLRDAAPY 649

Query: 625 VLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVY 684
           V +SN++A  G+WD   +V+K MRDRGV+K P  SW+E+ +KVHVF  +D  HP+   + 
Sbjct: 650 VTMSNIFAEAGQWDSVVKVKKAMRDRGVRKLPAYSWVEIKHKVHVFSANDDKHPQQLEIL 709

Query: 685 KYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVL 744
           + +E L  +M K GY PD      +++ + K  +L  HSE+LA+AF L+  P G+ + V+
Sbjct: 710 RKIEMLAEQMEKEGYDPDISCAHQNVDKESKIDSLKYHSERLAIAFALINTPEGSPILVM 769

Query: 745 KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KNLR C DCH A K +SK+VGREI VRD  RFHHFRDG CSCGDYW
Sbjct: 770 KNLRACTDCHAAIKVISKIVGREITVRDSNRFHHFRDGSCSCGDYW 815


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 264/749 (35%), Positives = 414/749 (55%), Gaps = 59/749 (7%)

Query: 12  LANRYASQLQLCDPRNPITS-SLARSVHAHMISSGFK-PREHIINRLIDIYCKSLKLVYA 69
           L NRYA+ L         T   +A +VH  ++ +  + P   ++N L+  Y KS +L  A
Sbjct: 8   LCNRYAAILSSAAGDGGRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARA 67

Query: 70  RTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSN 129
           R +FDE+P P++  R  L++A + S  V     +F   P   RD V YNA+IT +S   +
Sbjct: 68  RRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMP--ERDAVSYNALITGFSSTGS 125

Query: 130 GHAAIELFRDM-RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL 188
              +++L+R + R + V+P   T ++++  +A  + +      +HC V++ G G +  V 
Sbjct: 126 PARSVQLYRALLREESVRPTRITLSAMI-MVASALSDRALGHSVHCQVLRLGFGAYAFVG 184

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           + L+ +Y K           L+  ARRVF EM  +  + + T++TG ++   ++ A+   
Sbjct: 185 SPLVDMYAKM---------GLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLF 235

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRI---------QLDEFTYTSVISACANSGLFR 299
             M +   + W  +++G     L++  L +          +D++T+ S+++AC       
Sbjct: 236 QLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALE 295

Query: 300 LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAIL 359
            GKQ+HAY+ RT      E ++ V +ALV +Y KC  +  A  +F +M  R         
Sbjct: 296 EGKQIHAYITRTWY----EDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCR--------- 342

Query: 360 SAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY 419
                                 N++SWT MI G  QN   EE ++ FS+M+++G KP D+
Sbjct: 343 ----------------------NIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDF 380

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
                I+SCA L +LE G Q H   + SG    ++  NAL+T+Y +CG +E A+ +F+ M
Sbjct: 381 TLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEM 440

Query: 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
              D VSW A++    Q G     I+L+E+ML  G+ PD +TF+ VLSAC+ AGLV++G 
Sbjct: 441 SFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGC 500

Query: 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI 599
            YF++M   +GI P +DHY   IDL  R+G+F EA++ I  +P  P A  W  LL+ CR+
Sbjct: 501 DYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRL 560

Query: 600 HGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCS 659
            GN+++G  AAE L +  P +  +YVLL +M+A  G+W + A +R+ MRDR VKKEPGCS
Sbjct: 561 RGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCS 620

Query: 660 WIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYAL 719
           WI+  NKVH+F  DD +HP +  +Y+ LE L  +M + GY PD   VLHD+    K + +
Sbjct: 621 WIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADKVHMI 680

Query: 720 STHSEKLAVAFGLMKLPGGATVRVLKNLR 748
           S HSEKLA+AFGL+ +P    +R++KNLR
Sbjct: 681 SHHSEKLAIAFGLIFVPQEMPIRIVKNLR 709


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 273/792 (34%), Positives = 430/792 (54%), Gaps = 69/792 (8%)

Query: 20  LQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYAR---TLFDEI 76
           L  C   +  + S AR  HA ++         +   L+  Y  +L L   +   TL   +
Sbjct: 5   LSQCLSSSTASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHL 64

Query: 77  PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
           P P + + ++LI A++ S +                    +  ++T +SH          
Sbjct: 65  PHPTLFSFSSLIHAFARSHH--------------------FPHVLTTFSH---------- 94

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
              +R   + PD F   S + + A +   +    Q+H     SG    + V ++L  +Y+
Sbjct: 95  LHPLR---LIPDAFLLPSAIKSCASLRALDPG-QQLHAFAAASGFLTDSIVASSLTHMYL 150

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD-----GM 251
           KC        R L   AR++FD MP+RD + W+ M+ GY +   ++ A+E        G+
Sbjct: 151 KC-------DRIL--DARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGV 201

Query: 252 SENVGVAWNALISGYVHR---ELKMLMLRIQL------DEFTYTSVISACANSGLFRLGK 302
             N+ V+WN +++G+ +    +  + M R+ L      D  T + V+ A        +G 
Sbjct: 202 EPNL-VSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGA 260

Query: 303 QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY 362
           QVH Y+++ +   + +F   V +A++ +Y KCG V E   +F+++ E ++ S NA L+  
Sbjct: 261 QVHGYVIK-QGLGSDKF---VVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGL 316

Query: 363 VSAGLIDEAKSLFEAMR----ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
              G++D A  +F   +    E N+++WT +I+  +QNG   E L+LF  M+  G +P  
Sbjct: 317 SRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNA 376

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478
                 I +C  + AL +G+++H   +  G    +  G+ALI MYA+CG ++ A   F+ 
Sbjct: 377 VTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDK 436

Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG 538
           M  ++ VSWNA++     HG     +E++  ML+ G  PD +TF  VLSAC   GL +EG
Sbjct: 437 MSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEG 496

Query: 539 RRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCR 598
            R + +M   +GI P  +HYA  + LL R GK  EA  +I  +PF+P A +W ALL+ CR
Sbjct: 497 WRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCR 556

Query: 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGC 658
           +H N+ LG  AAE+LF L P + G Y+LLSN+YA+ G WD+  R+R++M+ +G++K PG 
Sbjct: 557 VHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGY 616

Query: 659 SWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYA 718
           SWIEV +KVH+ L  D +HP+ + + + L++L ++M+K GY+P T FVL D+E   KE  
Sbjct: 617 SWIEVGHKVHMLLAGDQSHPQMKDILEKLDKLNMQMKKSGYLPKTNFVLQDVEEQDKEQI 676

Query: 719 LSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHH 778
           L  HSEKLAV  GL+    G  ++V+KNLRIC DCH   K +S++ GREI VRD  RFHH
Sbjct: 677 LCGHSEKLAVVLGLLNTSPGQPLQVIKNLRICDDCHAVIKVISRLEGREIYVRDTNRFHH 736

Query: 779 FRDGKCSCGDYW 790
           F+DG CSCGD+W
Sbjct: 737 FKDGVCSCGDFW 748


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 261/739 (35%), Positives = 408/739 (55%), Gaps = 69/739 (9%)

Query: 52  IINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKM 111
           I+  L+ + C  L       ++    + +    T LI AY+   +V  AR+ F+    K 
Sbjct: 47  ILKLLVSVECAELAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACK- 105

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ 171
            D V +  M+  Y+ N     +++LF +MR     P++FTF  VL A  + +E       
Sbjct: 106 -DMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKA-CIGLEAFSVGKS 163

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H  V+K+   +   V   L+ +Y K     F  +  ++    RVF+EMP+ D + W+ M
Sbjct: 164 VHGCVLKTCYEMDLYVGVGLLDLYTK-----FGDANDVL----RVFEEMPKHDVIPWSFM 214

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           ++ Y +++    A E                  G + R        +  ++FT+ SV+ +
Sbjct: 215 ISRYAQSNQSREAVELF----------------GQMRRAF------VLPNQFTFASVLQS 252

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           CA+    +LGKQVH ++L    K   + ++ V+NAL+ +Y KC                 
Sbjct: 253 CASIENLQLGKQVHCHVL----KVGLDGNVFVSNALMDVYAKC----------------- 291

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
                         G +D +  LF  +  RN ++W  MI G  Q+G G++ L L+  M  
Sbjct: 292 --------------GRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLE 337

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
              +  +  ++  + +CA L A+E G Q+H+  + + YD  +  GNALI MYA+CG ++ 
Sbjct: 338 CQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKN 397

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
           A  VF+ +   D +SWNAMI+    HG    A++ ++ M +   +P+++TF+++LSAC++
Sbjct: 398 ARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSN 457

Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
           AGL+  G+ YF++M   YGI P  +HY   + LL R+G   +A  +I+ +P +P+  +W 
Sbjct: 458 AGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWR 517

Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
           ALL  C IH ++DLGI +A+Q+ Q+ P    T+VLLSN+YA   RW+  A VRK M+++G
Sbjct: 518 ALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKG 577

Query: 652 VKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDME 711
           VKKEPG SWIE    VH F V DT+HP+ + +   LE L ++  K GYVPD   VL D+E
Sbjct: 578 VKKEPGLSWIENQGIVHYFSVGDTSHPDMKMISGMLEWLNMKTEKAGYVPDLNAVLRDVE 637

Query: 712 SDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVR 771
            D+K+  L  HSE+LA+AFGL++ P    +R+LKNLRIC DCH+A K +SK+V R+I++R
Sbjct: 638 DDEKKRHLWVHSERLALAFGLIRTPSRGHIRILKNLRICTDCHSAIKLISKIVQRDIIIR 697

Query: 772 DGKRFHHFRDGKCSCGDYW 790
           D  RFHHF+DG CSCGDYW
Sbjct: 698 DMNRFHHFQDGICSCGDYW 716



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 142/553 (25%), Positives = 249/553 (45%), Gaps = 89/553 (16%)

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ 171
           R+TV +  +I  Y  +      ++LF  + R+  + + F FT++L  L + VE  +    
Sbjct: 4   RNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILK-LLVSVECAELAYS 62

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H  + K G      V  ALI  Y  C S         + +AR+ FD +  +D +SWT M
Sbjct: 63  LHACIYKLGHESNAFVGTALIDAYAVCGS---------VNSARQAFDAIACKDMVSWTGM 113

Query: 232 MTGYVKND-YLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           +  Y +ND + D+ + F +                       M M+    + FT+  V+ 
Sbjct: 114 VACYAENDRFQDSLQLFAE-----------------------MRMVGFNPNHFTFAGVLK 150

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           AC     F +GK VH  +L+T      E  L V   L+ LY K G  N+   +F +MP+ 
Sbjct: 151 ACIGLEAFSVGKSVHGCVLKT----CYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKH 206

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           D++ W+ ++S Y                               AQ+    E ++LF QMR
Sbjct: 207 DVIPWSFMISRY-------------------------------AQSNQSREAVELFGQMR 235

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
                P  + FA  + SCA +  L+ G+Q+H  ++  G D ++   NAL+ +YA+CG ++
Sbjct: 236 RAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLD 295

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
            +  +F  +PN + V+WN MI    Q G+G +A+ LY+ ML+  +    +T+ +VL AC 
Sbjct: 296 NSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACA 355

Query: 531 HAGLVKEGRRY----FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
               ++ G +      +T++    +          ID+  + G    A+ V D L  +  
Sbjct: 356 SLAAMELGTQIHSLSLKTIYDKDVVVGNA-----LIDMYAKCGSIKNARLVFDMLSERDE 410

Query: 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH-----HAGTYVLLSNMYANLGRWDDAA 641
              W A+++G  +HG +   ++A    FQ+M       +  T+V + +  +N G  D   
Sbjct: 411 IS-WNAMISGYSMHGLVGEALKA----FQMMQETECVPNKLTFVSILSACSNAGLLDIGQ 465

Query: 642 R-VRKLMRDRGVK 653
              + +++D G++
Sbjct: 466 NYFKSMVQDYGIE 478



 Score =  135 bits (340), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 144/310 (46%), Gaps = 57/310 (18%)

Query: 220 MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQ 279
           MP+R+ +S+ T++ GYV++  LD   E +D  S              VHRE        +
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLD---EVVDLFSR-------------VHREGH------E 38

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
           L+ F +T+++    +     L   +HA +     K   E +  V  AL+  Y  CG VN 
Sbjct: 39  LNPFVFTTILKLLVSVECAELAYSLHACIY----KLGHESNAFVGTALIDAYAVCGSVNS 94

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
           AR  F+ +  +D+VSW  +++ Y                               A+N   
Sbjct: 95  ARQAFDAIACKDMVSWTGMVACY-------------------------------AENDRF 123

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
           ++ L+LF++MR+ GF P  + FAG + +C GL A   G+ +H  ++ + Y+  L  G  L
Sbjct: 124 QDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGL 183

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           + +Y + G       VF  MP  D + W+ MI+   Q      A+EL+ QM +  +LP++
Sbjct: 184 LDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQ 243

Query: 520 ITFLTVLSAC 529
            TF +VL +C
Sbjct: 244 FTFASVLQSC 253



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 151/356 (42%), Gaps = 73/356 (20%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           +AS LQ C     +   L + VH H++  G      + N L+D+Y K  +L  +  LF E
Sbjct: 246 FASVLQSCASIENL--QLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFME 303

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P                                  R+ V +N MI  Y  + +G  A+ 
Sbjct: 304 LPN---------------------------------RNEVTWNTMIVGYVQSGDGDKALS 330

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           L+++M    V+    T++SVL A A +   E    Q+H   +K+       V NALI +Y
Sbjct: 331 LYKNMLECQVQASEVTYSSVLRACASLAAMELG-TQIHSLSLKTIYDKDVVVGNALIDMY 389

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            KC S         +  AR VFD + ERDE+SW  M++GY  +  +  A +    M E  
Sbjct: 390 AKCGS---------IKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETE 440

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-K 314
            V                       ++ T+ S++SAC+N+GL  +G+     +++    +
Sbjct: 441 CVP----------------------NKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIE 478

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLID 369
           P  E        +V L  + G +++A  +  ++P E ++  W A+L A V    +D
Sbjct: 479 PCMEHY----TCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVD 530



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 101/220 (45%), Gaps = 6/220 (2%)

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
           M +RN +S+  +I G  Q+   +E + LFS++  EG +   + F   +     +   E  
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
             LHA +   G++S+   G ALI  YA CG V +A   F+ +   D VSW  M+A   ++
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
                +++L+ +M   G  P+  TF  VL AC   GL  E     +++HG       E  
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKAC--IGL--EAFSVGKSVHGCVLKTCYEMD 176

Query: 558 YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI--WEALLA 595
               + LL    KF +A DV+      P   +  W  +++
Sbjct: 177 LYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMIS 216


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 275/771 (35%), Positives = 425/771 (55%), Gaps = 94/771 (12%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLK---LVYARTLFDEIPQPDIVARTTLIAAY 91
           R +HA MI +G     + +++L+++   S     L YA ++F+ I +P+++         
Sbjct: 50  RLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEPNLL--------- 100

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                                    +N M   ++ +S+  +A++L+  M    + P+++T
Sbjct: 101 ------------------------IWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYT 136

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           F  +L + A   +  K+  Q+H  V+K G  L   V  +LISVYV+            + 
Sbjct: 137 FPFLLKSCAK-SKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQ---------NGRLE 186

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR-- 269
            AR+VFD  P RD +S+T ++ GY    Y+++A++  D +     V+WNA+ISGY     
Sbjct: 187 DARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGN 246

Query: 270 -----EL--KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
                EL  +M+   I+ DE T  +V+SACA SG   LG+QVH+++           +L 
Sbjct: 247 YKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGS----NLK 302

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
           + N+L+ LY KCG+                               ++ A  LFE +  ++
Sbjct: 303 IVNSLMDLYSKCGE-------------------------------LETACGLFEGLLYKD 331

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
           ++SW  +I G       +E L LF +M   G +P D      + +CA LGA++ GR +H 
Sbjct: 332 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHV 391

Query: 443 QL---VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
            +   + S  ++S S   +LI MYA+CG +EAA+ VFN++ +    SWNAMI     HG 
Sbjct: 392 YIDKRLKSATNAS-SLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGR 450

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA 559
              A +++ +M K GI PD ITF+ +LSAC+ +G++  GR  F TM   Y I P  +HY 
Sbjct: 451 ADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYG 510

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
             IDLL  +G F EA+++I+++  +P   IW +LL  C+I GN++LG   A+ L ++ P 
Sbjct: 511 CMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPE 570

Query: 620 HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPE 679
           + G YVLLSN+YA  GRW++ A++R L+ D+G+KK PGCS IE+D+ VH F++ D  HP 
Sbjct: 571 NPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPR 630

Query: 680 AQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGA 739
            + +Y  LE++ + + K G+VPDT  VL +ME + KE AL  HSEKLA+AFGL+    G 
Sbjct: 631 NREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGT 690

Query: 740 TVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            + ++KNLR+C +CH A K +SK+  REI+ RD  RFHHFRDG CSC DYW
Sbjct: 691 KLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 149/349 (42%), Gaps = 71/349 (20%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R VH+ +   GF     I+N L+D+Y K  +L  A  LF+ +   D+++  TLI  Y+
Sbjct: 284 LGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYT 343

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
              ++ L +E                              A+ LF++M R   +P++ T 
Sbjct: 344 ---HMNLYKE------------------------------ALLLFQEMLRSGERPNDVTM 370

Query: 153 TSVLSALALI--VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
            S+L A A +  ++  +         +KS T   +S+  +LI +Y KC           +
Sbjct: 371 LSILPACAHLGAIDIGRWIHVYIDKRLKSATNA-SSLRTSLIDMYAKCGD---------I 420

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
            AA +VF+ +  +   SW  M+ G+  +   DAA +                        
Sbjct: 421 EAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFS--------------------- 459

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
            +M  + I+ D+ T+  ++SAC+ SG+  LG+ +   + + + K TP+  L     ++ L
Sbjct: 460 -RMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQ-DYKITPK--LEHYGCMIDL 515

Query: 331 YWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
               G   EA ++ N M  E D V W ++L A    G ++  +S  + +
Sbjct: 516 LGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNL 564


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 245/608 (40%), Positives = 371/608 (61%), Gaps = 23/608 (3%)

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKN-DYLDAAREF 247
           N LI+ YV+C           + +A RVF++M  +  ++W +++  + K   + + AR+ 
Sbjct: 45  NKLIASYVRCGD---------IDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQL 95

Query: 248 LDGMSENVGVAWNALISGYVHR----ELKMLMLRIQL-DEFTYTSVISACANSGLFRLGK 302
            + + +   V++N +++ + H     + +     + L D  ++ ++ISA A  GL    +
Sbjct: 96  FEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEAR 155

Query: 303 QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY 362
           ++ + +        PE +    +A+V+ Y  CG ++ A + F   P R +++W A+++ Y
Sbjct: 156 RLFSAM--------PEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGY 207

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
           +  G ++ A+ LF+ M  R L++W  MI+G  +NG  E+GL+LF  M   G KP   +  
Sbjct: 208 MKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLT 267

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
             +  C+ L AL+ G+Q+H  +      S  +AG +L++MY++CG ++ A  +F  +P  
Sbjct: 268 SVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRK 327

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
           D V WNAMI+   QHG G +A+ L+++M KEG+ PD ITF+ VL ACNHAGLV  G +YF
Sbjct: 328 DVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYF 387

Query: 543 ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
            TM   +GI    +HYA  +DLL RAGK SEA D+I S+PFKP   I+  LL  CRIH N
Sbjct: 388 NTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKN 447

Query: 603 IDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIE 662
           ++L   AA+ L +L P  A  YV L+N+YA   RWD  A +R+ M+D  V K PG SWIE
Sbjct: 448 LNLAEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIE 507

Query: 663 VDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTH 722
           +++ VH F   D  HPE  ++++ L+ L  +M+  GYVPD +FVLHD+  + KE  L  H
Sbjct: 508 INSVVHGFRSSDRLHPELASIHEKLKDLEKKMKLAGYVPDLEFVLHDVGEELKEQLLLWH 567

Query: 723 SEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDG 782
           SEKLA+AFGL+K+P G  +RV KNLR+CGDCH+A K++S + GREI+VRD  RFHHF+DG
Sbjct: 568 SEKLAIAFGLLKVPLGVPIRVFKNLRVCGDCHSATKYISTIEGREIIVRDTTRFHHFKDG 627

Query: 783 KCSCGDYW 790
            CSC DYW
Sbjct: 628 FCSCRDYW 635



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 178/423 (42%), Gaps = 96/423 (22%)

Query: 68  YARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHN 127
           YAR LF++IPQP+ V+   ++A +     V  AR  F+  PLK  D   +N MI+A    
Sbjct: 91  YARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLK--DVASWNTMISAL--- 145

Query: 128 SNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSV 187
               A + L  + RR            + SA+      EK C+                 
Sbjct: 146 ----AQVGLMGEARR------------LFSAMP-----EKNCVSW--------------- 169

Query: 188 LNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREF 247
            +A++S YV C           + AA   F   P R  ++WT M+TGY+K   ++ A   
Sbjct: 170 -SAMVSGYVACGD---------LDAAVECFYAAPMRSVITWTAMITGYMKFGRVELAERL 219

Query: 248 LDGMSENVGVAWNALISGYVHR---ELKMLMLRIQLDE------FTYTSVISACANSGLF 298
              MS    V WNA+I+GYV     E  + + R  L+        + TSV+  C+N    
Sbjct: 220 FQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSAL 279

Query: 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAI 358
           +LGKQVH  + +               +LV++Y KCG + +A ++F Q+P +D+V WNA+
Sbjct: 280 QLGKQVHQLVCKCPLSS----DTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAM 335

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
           +S Y   G                                G++ L+LF +M+ EG KP  
Sbjct: 336 ISGYAQHGA-------------------------------GKKALRLFDEMKKEGLKPDW 364

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFN 477
             F   + +C   G ++ G Q    +    G ++       ++ +  R G +  A  +  
Sbjct: 365 ITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIK 424

Query: 478 TMP 480
           +MP
Sbjct: 425 SMP 427



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 138/312 (44%), Gaps = 46/312 (14%)

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY--------------------- 362
           +N L+  Y +CG ++ A  +F  M  +  V+WN+IL+A+                     
Sbjct: 44  SNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFEKIPQPN 103

Query: 363 -VSAGL----------IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
            VS  +          + +A+  F++M  +++ SW  MIS LAQ G   E  +LFS M  
Sbjct: 104 TVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAMPE 163

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
           +         +G + +C  L A         +  ++    S+    A+IT Y + G VE 
Sbjct: 164 KNCVSWSAMVSGYV-ACGDLDAA-------VECFYAAPMRSVITWTAMITGYMKFGRVEL 215

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
           A  +F  M     V+WNAMIA   ++G     + L+  ML+ G+ P+ ++  +VL  C++
Sbjct: 216 AERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSN 275

Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYA--RFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
              ++ G++  + +      P   D  A    + +  + G   +A ++   +P K     
Sbjct: 276 LSALQLGKQVHQLV---CKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRK-DVVC 331

Query: 590 WEALLAGCRIHG 601
           W A+++G   HG
Sbjct: 332 WNAMISGYAQHG 343



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 109/239 (45%), Gaps = 43/239 (17%)

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH-GNGARAI 504
           H   ++++ A N LI  Y RCG +++A  VF  M    +V+WN+++AA  +  G+   A 
Sbjct: 34  HEFNNNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYAR 93

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED--HYARFI 562
           +L+E++ +    P+ +++  +L+   H   V + R +F++M       P +D   +   I
Sbjct: 94  QLFEKIPQ----PNTVSYNIMLACHWHHLGVHDARGFFDSM-------PLKDVASWNTMI 142

Query: 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA------------- 609
             L + G   EA+ +  ++P K     W A+++G    G++D  ++              
Sbjct: 143 SALAQVGLMGEARRLFSAMPEKNCVS-WSAMVSGYVACGDLDAAVECFYAAPMRSVITWT 201

Query: 610 --------------AEQLFQLMPHHA-GTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653
                         AE+LFQ M      T+  +   Y   GR +D  R+ + M + GVK
Sbjct: 202 AMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVK 260


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 235/567 (41%), Positives = 348/567 (61%), Gaps = 57/567 (10%)

Query: 224 DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEF 283
           DE+SW +++ G V+  + + A  F   M                 R++K       +DE+
Sbjct: 5   DEVSWNSLILGCVREGFEEDALSFFQKMRS---------------RDMK-------IDEY 42

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
           T  SV+++ A+  + +    VH  +++T  +    + L VNNAL+ +Y K GK       
Sbjct: 43  TLPSVLNSFASMKVMQNAISVHCLIIKTGFEA---YKL-VNNALIDMYAKQGK------- 91

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
                                   +D A  +F  M +++++SWT +++G + NG  EE +
Sbjct: 92  ------------------------LDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAI 127

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
           KLF +MR+ G  P   A A  +++CA L  ++ G+Q+HA LV SG +SSLS  N+L+TMY
Sbjct: 128 KLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMY 187

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
           A+CG +  AN  F+ MP  D +SW A+I    Q+G G  +++ Y+QM+  G  PD ITF+
Sbjct: 188 AKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFI 247

Query: 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF 583
            +L AC+H GL+  GR YFE M   YGI PG +HYA  IDLL R+GK +EAK +++ +  
Sbjct: 248 GLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMVV 307

Query: 584 KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARV 643
            P A +W+ALLA CR+H  ++LG  AA+ LF+L P ++  YV+LSNMY+  G+W+DAAR+
Sbjct: 308 APDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWEDAARI 367

Query: 644 RKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDT 703
           R+LMR RG+ KEPG SWIE ++KV  F+ +D  HP    +Y  ++++++ +++ GYVPD 
Sbjct: 368 RRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEAGYVPDM 427

Query: 704 KFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKV 763
            F LHD + + KE  L+ HSEKLAVAFGL+ +P GA +R+ KNLR+CGDCH A K+ SKV
Sbjct: 428 SFALHDTDDEVKELGLAYHSEKLAVAFGLLTVPQGAPIRIFKNLRVCGDCHTAMKYTSKV 487

Query: 764 VGREIVVRDGKRFHHFRDGKCSCGDYW 790
             R I++RD   FHHF +G+CSCGDYW
Sbjct: 488 YARHIILRDSNCFHHFTEGRCSCGDYW 514



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 117/407 (28%), Positives = 182/407 (44%), Gaps = 75/407 (18%)

Query: 109 LKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQ 168
           ++  D V +N++I           A+  F+ MR  D+K D +T  SVL++ A + +  + 
Sbjct: 1   MEFDDEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASM-KVMQN 59

Query: 169 CMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSW 228
            + +HC ++K+G   +  V NALI +Y K         +  +  A  VF +M ++D +SW
Sbjct: 60  AISVHCLIIKTGFEAYKLVNNALIDMYAK---------QGKLDCAIMVFSKMVDKDVVSW 110

Query: 229 TTMMTGYVKN-DYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTS 287
           T+++TGY  N  Y +A + F                        KM +  +  D+    S
Sbjct: 111 TSLVTGYSHNGSYEEAIKLF-----------------------CKMRISGVYPDQIAVAS 147

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           V+SACA   +   G+Q+HA L+    K   E SL V+N+LVT+Y KCG + +A   F+ M
Sbjct: 148 VLSACAELTVMDFGQQIHATLV----KSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNM 203

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
           P RD++SW                               T +I G AQNG G+  L+ + 
Sbjct: 204 PTRDVISW-------------------------------TALIVGYAQNGRGKHSLQFYD 232

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQ-LHAQLVHSGYDSSLSAGNALITMYARC 466
           QM   G KP    F G + +C+  G L +GR    A     G          +I +  R 
Sbjct: 233 QMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRS 292

Query: 467 GVVEAANCVFNTMPNV-DSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           G +  A  + N M    D+V W A++AA   H    + +EL E   K
Sbjct: 293 GKLAEAKGLLNQMVVAPDAVVWKALLAACRVH----KELELGEMAAK 335



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 112/388 (28%), Positives = 174/388 (44%), Gaps = 78/388 (20%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           A SVH  +I +GF+  + + N LID+Y K  KL  A  +F ++   D+V+ T+L+     
Sbjct: 60  AISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLV----- 114

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                                       T YSHN +   AI+LF  MR   V PD     
Sbjct: 115 ----------------------------TGYSHNGSYEEAIKLFCKMRISGVYPDQIAVA 146

Query: 154 SVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
           SVLSA A L V +  Q  Q+H T+VKSG     SV N+L+++Y KC S         +  
Sbjct: 147 SVLSACAELTVMDFGQ--QIHATLVKSGLESSLSVDNSLVTMYAKCGS---------IVD 195

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A R FD MP RD +SWT ++ GY +N     + +F D                      +
Sbjct: 196 ANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYD----------------------Q 233

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVTLY 331
           M+    + D  T+  ++ AC+++GL   G+     + +    KP PE        ++ L 
Sbjct: 234 MIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHY----ACMIDLL 289

Query: 332 WKCGKVNEARDIFNQM-PERDLVSWNAILSAYVSAGLID----EAKSLFEAMRERNLLSW 386
            + GK+ EA+ + NQM    D V W A+L+A      ++     AK+LFE +   N + +
Sbjct: 290 GRSGKLAEAKGLLNQMVVAPDAVVWKALLAACRVHKELELGEMAAKNLFE-LEPMNSMPY 348

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGF 414
            ++ +  +  G  E+  ++   MR  G 
Sbjct: 349 VMLSNMYSAAGKWEDAARIRRLMRSRGI 376


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 239/602 (39%), Positives = 361/602 (59%), Gaps = 67/602 (11%)

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           N+LI +Y KC           +  ARRVFD MP RD  SWT+++ GY +ND  D A   L
Sbjct: 103 NSLIHLYCKC---------GAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLL 153

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
            GM                      L  R + + FT+ S++ A   S    +G+Q+HA  
Sbjct: 154 PGM----------------------LRGRFKPNGFTFASLLKAAGASASSGIGEQIHALT 191

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
           ++ +        + V +AL+ +Y +CG+                               +
Sbjct: 192 VKYDWHD----DVYVGSALLDMYARCGR-------------------------------M 216

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
           D A ++F+ +  +N +SW  +I+G A+ G GE  L +F++M+  GF+   + ++   ++ 
Sbjct: 217 DMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAI 276

Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
           AG+GALE G+ +HA ++ SG   S   GN ++ MYA+ G +  A  VF+ +   D V+WN
Sbjct: 277 AGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWN 336

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP 548
           +M+ A  Q+G G  A+  +E+M K G+  ++ITFL++L+AC+H GLVKEG++YF+ M   
Sbjct: 337 SMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMK-E 395

Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
           Y + P  DHY   +DLL RAG  ++A   I  +P KP+A +W ALL  CR+H N  +G  
Sbjct: 396 YNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQF 455

Query: 609 AAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVH 668
           AA+ +F+L P   G  VLL N+YA+ G+WD AARVRK+M+  GVKKEP CSW+E++N VH
Sbjct: 456 AADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVH 515

Query: 669 VFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAV 728
           +F+ +D  HP ++ +YK  E++ +++RK GYVP+T +VL  ++  +++  L  HSEK+A+
Sbjct: 516 MFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIAL 575

Query: 729 AFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788
           AF L+ +P GAT+R++KN+RICGDCH+AF+++SKV  REIVVRD  RFHHF  G CSCGD
Sbjct: 576 AFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGD 635

Query: 789 YW 790
           YW
Sbjct: 636 YW 637



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 154/336 (45%), Gaps = 48/336 (14%)

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           Y S+I+ACA        + +HA+L  ++       S+ ++N+L+ LY KCG V +AR +F
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAG----SVFLDNSLIHLYCKCGAVADARRVF 122

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           + MP RD+ SW ++++ Y                               AQN   +E L 
Sbjct: 123 DGMPARDMCSWTSLIAGY-------------------------------AQNDMPDEALG 151

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           L   M    FKP  + FA  + +     +   G Q+HA  V   +   +  G+AL+ MYA
Sbjct: 152 LLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYA 211

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           RCG ++ A  VF+ + + + VSWNA+IA   + G+G   + ++ +M + G      T+ +
Sbjct: 212 RCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSS 271

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA----RFIDLLCRAGKFSEAKDVIDS 580
           V SA    G +++G+     M     I  GE   A      +D+  ++G   +A+ V D 
Sbjct: 272 VFSAIAGIGALEQGKWVHAHM-----IKSGERLSAFVGNTILDMYAKSGSMIDARKVFDR 326

Query: 581 LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           +  K     W ++L     +G   LG +A     ++
Sbjct: 327 VD-KKDVVTWNSMLTAFAQYG---LGREAVTHFEEM 358



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 169/387 (43%), Gaps = 73/387 (18%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           AR++HAH+  S F     + N LI +YCK   +  AR +FD +P                
Sbjct: 83  ARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPA--------------- 127

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                             RD   + ++I  Y+ N     A+ L   M R   KP+ FTF 
Sbjct: 128 ------------------RDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFA 169

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           S+L A A          Q+H   VK        V +AL+ +Y +C           M  A
Sbjct: 170 SLLKA-AGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARC---------GRMDMA 219

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
             VFD++  ++ +SW  ++ G+ +    +        M  N          G+       
Sbjct: 220 IAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRN----------GF------- 262

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
                +   FTY+SV SA A  G    GK VHA+++++  +     S  V N ++ +Y K
Sbjct: 263 -----EATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGER----LSAFVGNTILDMYAK 313

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE----RNLLSWTVM 389
            G + +AR +F+++ ++D+V+WN++L+A+   GL  EA + FE MR+     N +++  +
Sbjct: 314 SGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSI 373

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKP 416
           ++  +  G  +EG + F  M+    +P
Sbjct: 374 LTACSHGGLVKEGKQYFDMMKEYNLEP 400



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 140/283 (49%), Gaps = 39/283 (13%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+   + L+  Y+    + +A  +F++  L+ ++ V +NA+I  ++   +G   + +F +
Sbjct: 199 DVYVGSALLDMYARCGRMDMAIAVFDQ--LESKNGVSWNALIAGFARKGDGETTLLMFAE 256

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M+R+  +  +FT++SV SA+A I   E Q   +H  ++KSG  L   V N ++ +Y K  
Sbjct: 257 MQRNGFEATHFTYSSVFSAIAGIGALE-QGKWVHAHMIKSGERLSAFVGNTILDMYAKSG 315

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
           S         M  AR+VFD + ++D ++W +M+T + +                  G+  
Sbjct: 316 S---------MIDARKVFDRVDKKDVVTWNSMLTAFAQ-----------------YGLGR 349

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
            A+     H E +M    + L++ T+ S+++AC++ GL + GKQ   + +  E    PE 
Sbjct: 350 EAV----THFE-EMRKCGVHLNQITFLSILTACSHGGLVKEGKQY--FDMMKEYNLEPEI 402

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSA 361
              V   +V L  + G +N+A     +MP +   + W A+L +
Sbjct: 403 DHYVT--VVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGS 443


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 266/715 (37%), Positives = 406/715 (56%), Gaps = 26/715 (3%)

Query: 79  PDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFR 138
           P +VA    IA    + N++ AR  F+  PL  R T  YNA+I  Y  N    AA+ LF 
Sbjct: 15  PAVVAANARIAWLVRAGNIEGARAAFDAMPL--RTTASYNALIAGYFRNHLPDAALGLFH 72

Query: 139 DMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTV-VKSGTGLFTSVLNALISVYVK 197
            M   D+     ++ ++++ L+L             ++ +      FTS+L      YV+
Sbjct: 73  RMPSRDLG----SYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRG----YVR 124

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
                      L+  A R+F +MPER+ +++T ++ G++    ++ AR+  D M +   V
Sbjct: 125 ---------HGLLADAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVV 175

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACAN-SGLFRLGKQVHAYLLRTEAKPT 316
           A  A++SGY     ++   R   DE    +V+S  A  SG  + GK +   L R   +  
Sbjct: 176 ARTAMLSGYCQAG-RITEARALFDEMPKRNVVSWTAMISGYAQNGKVI---LARKLFEVM 231

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
           P+ +     A++  Y + G V +A D+FN MP+  + + NA++  +   G++D AK++FE
Sbjct: 232 PDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFE 291

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
            M  R+  +W+ MI    QN +  E L  F +M   G +P   +F   +T CA L   + 
Sbjct: 292 RMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADY 351

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           GR+LHA ++   +D+ + A +ALITMY +CG ++ A  VFN     D V WN+MI    Q
Sbjct: 352 GRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQ 411

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
           HG G  A+ +++ +    + PD IT++ VL+AC++ G VKEGR  F +M     I  G  
Sbjct: 412 HGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAA 471

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           HY+  +DLL RAG   EA D+I+++P +P A IW AL+  CR+H N ++   AA++L +L
Sbjct: 472 HYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMHKNAEIAEVAAKKLLEL 531

Query: 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT- 675
            P  AG YVLLS++Y + GRW+DA+ +RK +  R + K PGCSWIE +  VH+F   D  
Sbjct: 532 EPGSAGPYVLLSHIYTSTGRWEDASDMRKFISSRNLNKSPGCSWIEYNKMVHLFTSGDVL 591

Query: 676 AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKL 735
           +HPE   +   LE+L   + + GY  D  FVLHD++ +QK  +L  HSE+ AVA+GL+K+
Sbjct: 592 SHPEHAIILNMLEELDGLLMESGYSADGSFVLHDVDEEQKAQSLRYHSERQAVAYGLLKV 651

Query: 736 PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           P G  +RV+KNLR+CGDCH+A K ++K+  REI++RD  RFHHF+DG CSC DYW
Sbjct: 652 PAGMPIRVMKNLRVCGDCHSAIKLITKITSREIILRDANRFHHFKDGLCSCRDYW 706



 Score =  145 bits (367), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 116/439 (26%), Positives = 206/439 (46%), Gaps = 89/439 (20%)

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           AR LFDE+P  D+VART +++ Y  +  +  AR +F++ P   R+ V + AMI+ Y+ N 
Sbjct: 162 ARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDEMP--KRNVVSWTAMISGYAQNG 219

Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL 188
               A +LF      +V PD     + +S  A++V        +    V+    LF    
Sbjct: 220 KVILARKLF------EVMPDR----NEVSWTAMLVG------YIQAGHVEDAEDLF---- 259

Query: 189 NALISVYVKCVSSPFV--SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAARE 246
           NA+    V   ++  V      ++ AA+ +F+ M  RD+ +W+ M+  Y +N++L     
Sbjct: 260 NAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFL----- 314

Query: 247 FLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
            ++ +S                RE  ML   I+ +  ++ S+++ CA       G+++HA
Sbjct: 315 -MEALS--------------TFRE--MLCRGIRPNYTSFISILTVCAALATADYGRELHA 357

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366
            +LR     T  F++   +AL+T+Y KCG +++A+ +FN    +D+V WN++++ Y   G
Sbjct: 358 AMLRCSFD-TDVFAV---SALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHG 413

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
           L                               GEE L +F  +RL    P    + G +T
Sbjct: 414 L-------------------------------GEEALGIFDDLRLARMAPDGITYIGVLT 442

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNA----LITMYARCGVVEAANCVFNTMP-N 481
           +C+  G ++ GR++   +   G +SS+  G A    ++ +  R G+V+ A  + N MP  
Sbjct: 443 ACSYTGKVKEGREIFNSM---GMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVE 499

Query: 482 VDSVSWNAMIAALGQHGNG 500
            D++ W A++ A   H N 
Sbjct: 500 PDAIIWGALMGACRMHKNA 518



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 152/346 (43%), Gaps = 67/346 (19%)

Query: 48  PREHIIN--RLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFN 105
           P+ ++++   +I  Y ++ K++ AR LF+ +P  + V+ T ++  Y  + +V+ A ++FN
Sbjct: 201 PKRNVVSWTAMISGYAQNGKVILARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFN 260

Query: 106 KTP-----------------------------LKMRDTVFYNAMITAYSHNSNGHAAIEL 136
             P                             +  RD   ++AMI  Y  N     A+  
Sbjct: 261 AMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALST 320

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           FR+M    ++P+  +F S+L+  A +   +    ++H  +++         ++ALI++Y+
Sbjct: 321 FREMLCRGIRPNYTSFISILTVCAALATADYG-RELHAAMLRCSFDTDVFAVSALITMYI 379

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           KC +         +  A+RVF+    +D + W +M+TGY ++   + A    D +     
Sbjct: 380 KCGN---------LDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLR---- 426

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
                             + R+  D  TY  V++AC+ +G  + G+++   +       +
Sbjct: 427 ------------------LARMAPDGITYIGVLTACSYTGKVKEGREIFNSM---GMNSS 465

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
                   + +V L  + G V+EA D+ N MP E D + W A++ A
Sbjct: 466 IRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGA 511


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 281/780 (36%), Positives = 398/780 (51%), Gaps = 137/780 (17%)

Query: 30   TSSL--ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTL 87
            TS+L   + VH H   +GF     I N LI +Y K   +  AR +FD +           
Sbjct: 436  TSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCD--------- 486

Query: 88   IAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147
                                    RD + +NAM+   + N  GH A  +F  M+++ + P
Sbjct: 487  ------------------------RDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVP 522

Query: 148  DNFTFTSVLS------ALALIVEEEKQCMQMHCTVVKSGTGLFTS--VLNALISVYVKCV 199
            D+ T+ S+L+      AL  + E  K  ++         TGL +   V +A I +Y++C 
Sbjct: 523  DSTTYLSLLNTHGSTDALEWVNEVHKHAVE---------TGLISDFRVGSAFIHMYIRCG 573

Query: 200  SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
            S                                        +D AR   D +S      W
Sbjct: 574  S----------------------------------------IDDARLLFDKLSVRHVTTW 593

Query: 260  NALISGYVH----RELKMLMLRIQLDEF-----TYTSVISACANSGLFRLGKQVHAYLLR 310
            NA+I G       RE   L L++Q + F     T+ +++SA  +       K+VH++   
Sbjct: 594  NAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSH--- 650

Query: 311  TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
              A       L V NALV  Y KCG                                +  
Sbjct: 651  --ATDAGLVDLRVGNALVHTYSKCGN-------------------------------VKY 677

Query: 371  AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
            AK +F+ M ERN+ +WT+MI GLAQ+G G +    F QM  EG  P    +   +++CA 
Sbjct: 678  AKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACAS 737

Query: 431  LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
             GALE  +++H   V +G  S L  GNAL+ MYA+CG ++ A  VF+ M   D  SW  M
Sbjct: 738  TGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVM 797

Query: 491  IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
            I  L QHG G  A++ + +M  EG  P+  +++ VL+AC+HAGLV EGRR F +M   YG
Sbjct: 798  IGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYG 857

Query: 551  IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
            I P  +HY   +DLL RAG   EA+  I ++P +P    W ALL  C  +GN+++   AA
Sbjct: 858  IEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAA 917

Query: 611  EQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVF 670
            ++  +L P  A TYVLLSN+YA  G+W+    VR +M+ +G++KEPG SWIEVDN++H F
Sbjct: 918  KERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSF 977

Query: 671  LVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAF 730
            +V DT+HPE++ +Y  L  L+  ++  GYVPDT+ VL + + + KE AL +HSEKLA+ +
Sbjct: 978  VVGDTSHPESKEIYAQLNDLIERLKAKGYVPDTRLVLRNTDQEHKEQALCSHSEKLAIVY 1037

Query: 731  GLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            GLM       +RV KNLR+C DCH A KF+SK+ GREIV RD KRFHHF+DG CSCGDYW
Sbjct: 1038 GLMHTQSKDPIRVYKNLRVCSDCHTATKFISKITGREIVARDAKRFHHFKDGVCSCGDYW 1097



 Score =  205 bits (522), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 160/587 (27%), Positives = 265/587 (45%), Gaps = 114/587 (19%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y + LQ C  +  I   LA+ VH  +I SG +   ++ N+L+ +Y +  +L  AR +FD+
Sbjct: 121 YVNILQRCLKQEDIL--LAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDK 178

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           + + +I   TT+I  Y+                               Y H  +   A+ 
Sbjct: 179 LLKKNIYIWTTMIGGYA------------------------------EYGHAED---AMR 205

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           ++  MR++  +P+  T+ S+L A    V   K   ++H  +++SG      V  AL+++Y
Sbjct: 206 VYDKMRQECGQPNEITYLSILKACCCPV-NLKWGKKIHAHIIQSGFQSDVRVETALVNMY 264

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
           VKC S         +  A+ +FD+M ER+ +SWT M+ G     Y      F        
Sbjct: 265 VKCGS---------IEDAQLIFDKMVERNVISWTVMIGGLAH--YGRGQEAF-------- 305

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                       H  L+M       + +TY S+++A A++G     K+VH++ +      
Sbjct: 306 ------------HLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAV----NA 349

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
                L V NALV +Y K G +++AR +F+ M ERD+ SW  ++                
Sbjct: 350 GLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMI---------------- 393

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI--TSCAGLGA 433
                           GLAQ+G G+E   LF QM+  G  P    +   +  ++ A   A
Sbjct: 394 ---------------GGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSA 438

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
           LE  + +H     +G+ S L  GNALI MYA+CG ++ A  VF+ M + D +SWNAM+  
Sbjct: 439 LEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGG 498

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
           L Q+G G  A  ++ QM +EG++PD  T+L++L+   H     +   +   +H  + +  
Sbjct: 499 LAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLN--THGS--TDALEWVNEVH-KHAVET 553

Query: 554 GEDHYAR----FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           G     R    FI +  R G   +A+ + D L  +     W A++ G
Sbjct: 554 GLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVR-HVTTWNAMIGG 599



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 174/667 (26%), Positives = 291/667 (43%), Gaps = 109/667 (16%)

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           A+ + +   +  +  D+F++ ++L    L  E+     Q+H  ++KSG      V N L+
Sbjct: 102 AVAMLKIRVQQGIAIDSFSYVNILQR-CLKQEDILLAKQVHVCIIKSGMEQNLYVANKLL 160

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
            VY++C           +  AR+VFD++ +++   WTTM+ GY +  + + A    D M 
Sbjct: 161 RVYIRC---------GRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMR 211

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
           +  G                      Q +E TY S++ AC      + GK++HA+++++ 
Sbjct: 212 QECG----------------------QPNEITYLSILKACCCPVNLKWGKKIHAHIIQSG 249

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
            +      + V  ALV +Y KCG + +A+ IF++M ER+++SW                 
Sbjct: 250 FQS----DVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISW----------------- 288

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
                         TVMI GLA  G G+E   LF QM+ EGF P  Y +   + + A  G
Sbjct: 289 --------------TVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAG 334

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
           ALE  +++H+  V++G    L  GNAL+ MYA+ G ++ A  VF+ M   D  SW  MI 
Sbjct: 335 ALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIG 394

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL-----VKEGRRYFETMHG 547
            L QHG G  A  L+ QM + G LP+  T+L++L+A   A       VK   ++ E    
Sbjct: 395 GLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGF 454

Query: 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
              +  G       I +  + G   +A+ V D +  +     W A++ G   +G      
Sbjct: 455 ISDLRIGN----ALIHMYAKCGSIDDARLVFDGMCDRDVIS-WNAMMGGLAQNGCGHEAF 509

Query: 608 QAAEQLFQ--LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKE--PGCSWIE- 662
               Q+ Q  L+P  + TY+ L N + +    +    V K   + G+  +   G ++I  
Sbjct: 510 TVFLQMQQEGLVP-DSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHM 568

Query: 663 ------VDNKVHVFLVDDTAH----------PEAQAVYKYLEQLVLEMRKLGYVPDTKFV 706
                 +D+   +F      H             Q   +    L L+M++ G++PD    
Sbjct: 569 YIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTF 628

Query: 707 LHDMESDQKEYAL----STHSEKLAVAFGLMKLP-GGATVRVLKNLRICGDCHNAFKFMS 761
           ++ + ++  E AL      HS   A   GL+ L  G A V        CG+   A +   
Sbjct: 629 INILSANVDEEALEWVKEVHSH--ATDAGLVDLRVGNALVHTYSK---CGNVKYAKQVFD 683

Query: 762 KVVGREI 768
            +V R +
Sbjct: 684 DMVERNV 690



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 163/641 (25%), Positives = 259/641 (40%), Gaps = 144/641 (22%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y S L+ C    P+     + +HAH+I SGF                             
Sbjct: 222 YLSILKACCC--PVNLKWGKKIHAHIIQSGF----------------------------- 250

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
             Q D+   T L+  Y    +++ A+ +F+K  +  R+ + +  MI   +H   G  A  
Sbjct: 251 --QSDVRVETALVNMYVKCGSIEDAQLIFDK--MVERNVISWTVMIGGLAHYGRGQEAFH 306

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LF  M+R+   P+++T+ S+L+A A     E    ++H   V +G  L   V NAL+ +Y
Sbjct: 307 LFLQMQREGFIPNSYTYVSILNANASAGALE-WVKEVHSHAVNAGLALDLRVGNALVHMY 365

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            K  S                                        +D AR   DGM+E  
Sbjct: 366 AKSGS----------------------------------------IDDARVVFDGMTERD 385

Query: 256 GVAWNALISGYVH----RELKMLMLRIQLDE-----FTYTSVI--SACANSGLFRLGKQV 304
             +W  +I G       +E   L L++Q +       TY S++  SA A++      K V
Sbjct: 386 IFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVV 445

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVS 364
           H +    EA    +  L + NAL+ +Y KC                              
Sbjct: 446 HKH--AEEAGFISD--LRIGNALIHMYAKC------------------------------ 471

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
            G ID+A+ +F+ M +R+++SW  M+ GLAQNG G E   +F QM+ EG  P    +   
Sbjct: 472 -GSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSL 530

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           + +     ALE   ++H   V +G  S    G+A I MY RCG ++ A  +F+ +     
Sbjct: 531 LNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHV 590

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
            +WNAMI    Q   G  A+ L+ QM +EG +PD  TF+ +LS    A + +E   + + 
Sbjct: 591 TTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILS----ANVDEEALEWVKE 646

Query: 545 MH------GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCR 598
           +H      G   +  G       +    + G    AK V D +  + +   W  ++ G  
Sbjct: 647 VHSHATDAGLVDLRVGN----ALVHTYSKCGNVKYAKQVFDDM-VERNVTTWTMMIGGLA 701

Query: 599 IHGNIDLGIQAAEQLFQLMPH----HAGTYVLLSNMYANLG 635
            HG    G  A     Q++       A TYV + +  A+ G
Sbjct: 702 QHG---CGHDAFSHFLQMLREGIVPDATTYVSILSACASTG 739



 Score = 46.6 bits (109), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 65/163 (39%), Gaps = 38/163 (23%)

Query: 13  ANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTL 72
           A  Y S L  C     +     + VH H +S+G      + N L+ +Y K   +  AR++
Sbjct: 725 ATTYVSILSACASTGAL--EWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSV 782

Query: 73  FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
           FD++ +                                 RD   +  MI   + +  G  
Sbjct: 783 FDDMVE---------------------------------RDVFSWTVMIGGLAQHGRGLE 809

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALA---LIVEEEKQCMQM 172
           A++ F  M+ +  KP+ +++ +VL+A +   L+ E  +Q + M
Sbjct: 810 ALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSM 852


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 211/435 (48%), Positives = 304/435 (69%)

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           NA++  Y   G  D A  +FE M +++++SWT +++G   NG  EE L+LF +MR+ G  
Sbjct: 6   NALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIH 65

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P     A  +++CA L  LE G+Q+HA  + SG  SSLS  N+L++MYA+CG +E AN V
Sbjct: 66  PDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKV 125

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           F++M   D ++W A+I    Q+G G  ++  Y  M+  G+ PD ITF+ +L AC+HAGLV
Sbjct: 126 FDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLV 185

Query: 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
           + GR YF++M   YGI PG +HYA  IDLL R+GK  EAK++++ +  +P A +W+ALLA
Sbjct: 186 EHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLA 245

Query: 596 GCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKE 655
            CR+HGN++LG +AA  LF+L P +A  YVLLSN+Y+  G+W++AA+ R+LM+ RGV KE
Sbjct: 246 ACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKE 305

Query: 656 PGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQK 715
           PGCSWIE+ +KVH F+ +D +HP    +Y  ++++++ +++ GYVPD  F LHDM+ + K
Sbjct: 306 PGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEGK 365

Query: 716 EYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKR 775
           E  L+ HSEKLAVAFGL+ +P GA +R+ KNLRICGDCH A K++S V  R +++RD   
Sbjct: 366 ELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRDSNC 425

Query: 776 FHHFRDGKCSCGDYW 790
           FHHFR+G CSC DYW
Sbjct: 426 FHHFREGACSCSDYW 440



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 130/293 (44%), Gaps = 49/293 (16%)

Query: 225 ELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE---------LKMLM 275
           EL    ++  Y K  Y D A +  + M++   ++W +L++G VH            +M +
Sbjct: 2   ELVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRI 61

Query: 276 LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG 335
           + I  D+    +V+SACA   +   GKQVHA  L++        SL V+N+LV++Y KCG
Sbjct: 62  MGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGS----SLSVDNSLVSMYAKCG 117

Query: 336 KVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQ 395
            + +A  +F+ M  +D+++W                               T +I G AQ
Sbjct: 118 CIEDANKVFDSMEIQDVITW-------------------------------TALIVGYAQ 146

Query: 396 NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLS 454
           NG G E L  ++ M   G KP    F G + +C+  G +E+GR     +    G      
Sbjct: 147 NGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSMEEVYGIKPGPE 206

Query: 455 AGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN---GARA 503
               +I +  R G +  A  + N M    D+  W A++AA   HGN   G RA
Sbjct: 207 HYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERA 259



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 158/342 (46%), Gaps = 53/342 (15%)

Query: 82  VARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMR 141
           +    L+  Y+       A ++F K  +  +D + + +++T   HN +   A+ LF +MR
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEK--MTDKDVISWTSLVTGCVHNGSYEEALRLFCEMR 60

Query: 142 RDDVKPDNFTFTSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVS 200
              + PD     +VLSA A L V E  +  Q+H   +KSG G   SV N+L+S+Y KC  
Sbjct: 61  IMGIHPDQIVIAAVLSACAELTVLEFGK--QVHANFLKSGLGSSLSVDNSLVSMYAKC-- 116

Query: 201 SPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWN 260
                    +  A +VFD M  +D ++WT ++ GY +N     +  F + M         
Sbjct: 117 -------GCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBM--------- 160

Query: 261 ALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA----KPT 316
            + SG            ++ D  T+  ++ AC+++GL   G+   +Y    E     KP 
Sbjct: 161 -IASG------------VKPDFITFIGLLFACSHAGLVEHGR---SYFQSMEEVYGIKPG 204

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLID----EA 371
           PE        ++ L  + GK+ EA+++ NQM  + D   W A+L+A    G ++     A
Sbjct: 205 PEHY----ACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAA 260

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
            +LFE +  +N + + ++ +  +  G  EE  K    M+L G
Sbjct: 261 NNLFE-LEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRG 301


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 239/576 (41%), Positives = 347/576 (60%), Gaps = 20/576 (3%)

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL------------KMLMLRI 278
           M+  Y  +  LD+A    D +     + +N++I  Y                 +M  L +
Sbjct: 118 MVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGL 177

Query: 279 QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
             D FT   V+ +CA+     +G+ VH   LR       E    V  +L+ +Y KCG + 
Sbjct: 178 LGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGL----EGDFYVGASLIDMYVKCGVIG 233

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGY 398
           +AR +F++M  RD+ SWNA+++ Y+  G I  A+ LFE M  RN++SWT MISG  QNG+
Sbjct: 234 DARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGF 293

Query: 399 GEEGLKLFSQMRLEG--FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
            E+ L LF +M  +G   KP        + +CA   ALE GR++H      G   + S  
Sbjct: 294 AEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQ 353

Query: 457 NALITMYARCGVVEAANCVFNTMPN--VDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
            AL  MYA+C  +  A C F+ +     + ++WN MI A   HG G  A+ ++E ML+ G
Sbjct: 354 TALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAG 413

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
           + PD +TF+ +LS C+H+GL+  G  +F  M   + + P  +HYA  +DLL RAG+  EA
Sbjct: 414 VQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEA 473

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL 634
           K++I  +P +    +W ALLA CR H N+++   AA +LF L P ++G YVLLSN+YA  
Sbjct: 474 KELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEA 533

Query: 635 GRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEM 694
           G W++  ++R L++ +G+KK PGCSWIE++ K H+F+  D +HP+A+ +YK+LE L  ++
Sbjct: 534 GMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKI 593

Query: 695 RKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCH 754
           +  GY+PDT FVLHD+  ++KEY L+THSEKLA+AFGL+    G  +RV KNLRICGDCH
Sbjct: 594 KMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCH 653

Query: 755 NAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            A KF+SK+  REI+VRD  RFH F+DG CSCGDYW
Sbjct: 654 AATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 689



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 113/453 (24%), Positives = 192/453 (42%), Gaps = 76/453 (16%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           YA   Q     N I   L +  HA ++  G +P   +  +++ +Y  S  L  A  +FD 
Sbjct: 80  YAPIFQFLTRHNFI--KLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDR 137

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA-- 133
           I  P                                  ++ YN++I AY+ +        
Sbjct: 138 IDNPS---------------------------------SLLYNSIIRAYTRHGXXXXXXX 164

Query: 134 -IELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ--MHCTVVKSGTGLFTSVLNA 190
            +E +  M    +  DNFT   VL + A   +  + CM   +H   ++ G      V  +
Sbjct: 165 XLEAYARMHFLGLLGDNFTLPFVLKSCA---DLSRVCMGRCVHGQGLRVGLEGDFYVGAS 221

Query: 191 LISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDG 250
           LI +YVKC          ++G AR++FD+M  RD  SW  ++ GY+K   +  A +  + 
Sbjct: 222 LIDMYVKC---------GVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFER 272

Query: 251 MSENVGVAWNALISGYVHRELKMLMLRIQLDEF------------TYTSVISACANSGLF 298
           M     V+W A+ISGY         L +  DE             T  SV+ ACA S   
Sbjct: 273 MEHRNIVSWTAMISGYTQNGFAEQALGL-FDEMLQDGSEMKPNWVTIVSVLPACAQSAAL 331

Query: 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--RDLVSWN 356
             G+++H +            +  V  AL  +Y KC  + EAR  F+ + +  ++L++WN
Sbjct: 332 ERGRRIHDF----ANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWN 387

Query: 357 AILSAYVSAGLIDEAKSLFEAMR----ERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RL 411
            +++AY S G   EA S+FE M     + + +++  ++SG + +G  + GL  F+ M  +
Sbjct: 388 TMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTI 447

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
              +P    +A  +      G L   ++L +Q+
Sbjct: 448 HSVEPRVEHYACVVDLLGRAGRLVEAKELISQM 480



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 181/399 (45%), Gaps = 61/399 (15%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           + R VH   +  G +   ++   LID+Y K   +  AR LFD++   D+ +   LIA Y 
Sbjct: 199 MGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYM 258

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD--DVKPDNF 150
               + +A ++F +  ++ R+ V + AMI+ Y+ N     A+ LF +M +D  ++KP+  
Sbjct: 259 KEGEIGVAEDLFER--MEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWV 316

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           T  SVL A A     E+   ++H      G  L +SV  AL  +Y KC S         +
Sbjct: 317 TIVSVLPACAQSAALERG-RRIHDFANGIGLHLNSSVQTALAGMYAKCYS---------L 366

Query: 211 GAARRVFDEMPE--RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
             AR  FD + +  ++ ++W TM+T Y                S   GV   ++      
Sbjct: 367 VEARCCFDMIAQNGKNLIAWNTMITAYA---------------SHGCGVEAVSIFE---- 407

Query: 269 RELKMLMLRIQLDEFTYTSVISACANSGLFRLG-------KQVHAYLLRTEAKPTPEFSL 321
               ML   +Q D  T+  ++S C++SGL   G         +H+   R E         
Sbjct: 408 ---NMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYA------ 458

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSAYVSAGLID----EAKSLFE 376
                +V L  + G++ EA+++ +QMP +   S W A+L+A  S   ++     A+ LF 
Sbjct: 459 ----CVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLF- 513

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
            +   N  ++ ++ +  A+ G  EE  KL + ++ +G K
Sbjct: 514 VLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMK 552



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 110/235 (46%), Gaps = 20/235 (8%)

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           G+Q HAQ+V  G   +      ++ MYA  G +++A  VF+ + N  S+ +N++I A  +
Sbjct: 96  GQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTR 155

Query: 497 HG---NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
           HG        +E Y +M   G+L D  T   VL +C     V  GR     +HG  G+  
Sbjct: 156 HGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGR----CVHGQ-GLRV 210

Query: 554 G--EDHY--ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609
           G   D Y  A  ID+  + G   +A+ + D +  +  A  W AL+AG    G I +    
Sbjct: 211 GLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMAS-WNALIAGYMKEGEIGV---- 265

Query: 610 AEQLFQLMPH-HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEV 663
           AE LF+ M H +  ++  + + Y   G  + A  +   M   G + +P  +W+ +
Sbjct: 266 AEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKP--NWVTI 318


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 263/698 (37%), Positives = 395/698 (56%), Gaps = 56/698 (8%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           AR VHA +I + F     I NRL+D+Y K   L  AR +FD + Q +  +   ++ A + 
Sbjct: 38  ARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTK 97

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
              +  A  +F   P   RD   +NAM++ ++       A+    DM  +D   + ++F 
Sbjct: 98  FGALDEALNLFKCMP--ERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFG 155

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           S LSA A +++     +Q+H  + KS   L   + +AL+ +Y KC          ++ +A
Sbjct: 156 SALSACAGLMDLSIG-VQIHGLIAKSRYSLDVYMGSALVDMYSKC---------RVVASA 205

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           +R FD+M  R+ +SW +++T Y +N     A E                        ++M
Sbjct: 206 QRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVF----------------------VRM 243

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
           +   I+ DE T  SV SACA+    R G Q+HA +++ +        L + NALV +Y K
Sbjct: 244 MNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRN---DLVLGNALVDMYAK 300

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
           C +VNEAR +F++MP RD+VS  +++S Y  A  +  A+ +F  M ERN++SW  +I+G 
Sbjct: 301 CRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGY 360

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY---- 449
            QNG  EE ++LF  ++ E   P  Y F   + +CA L  L+ GRQ H  ++  G+    
Sbjct: 361 TQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKS 420

Query: 450 --DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
             DS +  GN+LI MY +CG+VE    VF  M   D+VSWNAMI    Q+G G  A+E++
Sbjct: 421 GEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIF 480

Query: 508 EQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR 567
            +ML  G  PD +T + VLSAC+HAGLV+EGR YF++M   +G+ P +DHY   +DLL R
Sbjct: 481 REMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGR 540

Query: 568 AGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627
           AG   EA ++I ++P +P A +W +LLA C++HGNI LG   AE+L ++ P ++G YVLL
Sbjct: 541 AGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLL 600

Query: 628 SNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYL 687
           SNMYA LGRW D  RVRK MR  GV K+PGCSWI + + +HVF+V D  HP  + +Y  L
Sbjct: 601 SNMYAELGRWKDVVRVRKQMRQMGVIKQPGCSWISIQSHLHVFMVKDKRHPHKKDIYLIL 660

Query: 688 EQLVLEMRKLGYVP------------DTKFVLH-DMES 712
           + L  +M+++GYVP            D++ +LH +ME+
Sbjct: 661 KILTEQMKRVGYVPEADDDEPYEEESDSELILHSEMET 698



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 118/413 (28%), Positives = 202/413 (48%), Gaps = 60/413 (14%)

Query: 17  ASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHII--NRLIDIYCKSLKLVYARTLFD 74
           AS    C   + I   L   +HA ++    K R  ++  N L+D+Y K  ++  AR +FD
Sbjct: 256 ASVASACASLSAIREGL--QIHARVMKHD-KYRNDLVLGNALVDMYAKCRRVNEARLVFD 312

Query: 75  EIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAI 134
            +P  D+V+ T++++ Y+ + +VK AR MF+   +  R+ V +NA+I  Y+ N     A+
Sbjct: 313 RMPLRDVVSETSMVSGYAKASSVKAARLMFSN--MMERNVVSWNALIAGYTQNGENEEAV 370

Query: 135 ELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSG----TGLFTSVL-- 188
            LF  ++R+ + P ++TF ++L+A A +  + K   Q H  ++K G    +G  + +   
Sbjct: 371 RLFLLLKRESIWPTHYTFGNLLNACANLA-DLKLGRQAHTHILKHGFWFKSGEDSDIFVG 429

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           N+LI +Y+KC          L+   R VF+ M ERD +SW  M+ GY +N Y   A E  
Sbjct: 430 NSLIDMYMKC---------GLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIF 480

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
             M          L+SG             + D  T   V+SAC+++GL   G+     +
Sbjct: 481 REM----------LVSGE------------RPDHVTMIGVLSACSHAGLVEEGRCYFQSM 518

Query: 309 LRTEAKPTPEFSL-PVNN---ALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYV 363
                  T E  L PV +    +V L  + G ++EA ++   MP E D V W ++L+A  
Sbjct: 519 -------TIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACK 571

Query: 364 SAGLIDEAKSLFEAMRERNLLS---WTVMISGLAQNGYGEEGLKLFSQMRLEG 413
             G I   K + E + E + L+   + ++ +  A+ G  ++ +++  QMR  G
Sbjct: 572 VHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMG 624



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 4/126 (3%)

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
           FA  + +C    ++   R +HA+++ + + S +   N L+ +Y +CG +E A  VF+ M 
Sbjct: 22  FAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQ 81

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
             ++ SWNA++ AL + G    A+ L++ M +     D+ ++  ++S        +E  R
Sbjct: 82  QRNTFSWNAVLGALTKFGALDEALNLFKCMPER----DQCSWNAMVSGFAQRDRFEEALR 137

Query: 541 YFETMH 546
           +   MH
Sbjct: 138 FVVDMH 143


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 263/689 (38%), Positives = 392/689 (56%), Gaps = 52/689 (7%)

Query: 113 DTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQM 172
           + + +N M+  ++ +S+  +A+E++  M      P++++F  +L + A     E +  Q+
Sbjct: 28  NLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKAFE-EGRQI 86

Query: 173 HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMM 232
           H  V+K G GL   V  +LIS+Y +            +  AR+VFD    RD +S T ++
Sbjct: 87  HAQVLKLGCGLDRYVHTSLISMYAR---------NGGLEDARKVFDASSHRDVVSCTALI 137

Query: 233 TGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR-------ELKMLMLR--IQLDEF 283
           TGY       +AR+  D ++E   V+WNA+I+GYV         EL   M+R  ++ DE 
Sbjct: 138 TGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEG 197

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
           T  SV+SACA SG   LG+QVH+++   +       SL + NAL+ LY KCG V      
Sbjct: 198 TLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDV------ 251

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
                                    + A  LFE +  ++++SW  +I G       +E L
Sbjct: 252 -------------------------ETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEAL 286

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS--GYDSSLSAGNALIT 461
            LF +M   G  P D      + +CA LGA++ GR +H  +     G  +  S   +LI 
Sbjct: 287 LLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLID 346

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           MYA+CG +EAA+ VFN+M      SWNAMI     HG    A +L+ +M    + PD IT
Sbjct: 347 MYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDIT 406

Query: 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581
           F+ +LSAC+H+GL+  GR+ F++M   Y + P  +HY   IDLL  +G F EA+++I ++
Sbjct: 407 FVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTM 466

Query: 582 PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAA 641
           P +P   IW +LL  C+ HGN++L    A++L ++ P ++G+YVLLSN+YA  GRW+D A
Sbjct: 467 PMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVA 526

Query: 642 RVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVP 701
           RVR ++  +G+KK PGCS IEVD+ VH F++ D  HP  + +Y  LE++ +++ + G+ P
Sbjct: 527 RVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAP 586

Query: 702 DTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMS 761
           DT  VL +ME + KE AL  HSEKLA+AFGL+    G  + ++KNLR+C +CH A K +S
Sbjct: 587 DTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLIS 646

Query: 762 KVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           K+  REIV RD  RFHHFRDG CSC DYW
Sbjct: 647 KIYKREIVARDRTRFHHFRDGVCSCCDYW 675



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 208/425 (48%), Gaps = 39/425 (9%)

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           CV SP       +  A  VF+ + E + L W TM+ G+  +    +A E           
Sbjct: 5   CVVSPHFDG---LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEM---------- 51

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                   YV    +M+ L    + +++  ++ +CA S  F  G+Q+HA +L+       
Sbjct: 52  --------YV----RMVSLGHLPNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCG--- 96

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
                V+ +L+++Y + G + +AR +F+    RD+VS  A+++ Y S G    A+ +F+ 
Sbjct: 97  -LDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDE 155

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
           + ER+++SW  MI+G  +NG  EE L+LF +M     +P +      +++CA  G++E G
Sbjct: 156 ITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELG 215

Query: 438 RQLHAQLVHS----GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
           RQ+H+ +       G+ SSL   NALI +Y++CG VE A  +F  +   D VSWN +I  
Sbjct: 216 RQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGG 275

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY-GIP 552
                    A+ L+++ML+ G  P+ +T L+VL AC H G +  GR     +     G+ 
Sbjct: 276 YTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVT 335

Query: 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
                    ID+  + G    A  V +S+ ++ S   W A++ G  +HG  +    AA  
Sbjct: 336 NETSLRTSLIDMYAKCGDIEAAHQVFNSMLYR-SLSSWNAMIFGFAMHGRAN----AAFD 390

Query: 613 LFQLM 617
           LF  M
Sbjct: 391 LFSRM 395



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 136/485 (28%), Positives = 215/485 (44%), Gaps = 73/485 (15%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R +HA ++  G     ++   LI +Y ++  L  AR +FD     D+V+ T LI  Y++
Sbjct: 83  GRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITGYAS 142

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
             + + AR++F++  +  RD V +NAMIT Y  N     A+ELF++M R +V+PD  T  
Sbjct: 143 RGDFRSARKVFDE--ITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLV 200

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKS----GTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           SV+SA A     E    Q+H  V       G      ++NALI +Y KC           
Sbjct: 201 SVVSACAQSGSIELG-RQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGD--------- 250

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +  A  +F+ +  +D +SW T++ GY   +    A      M          L SG    
Sbjct: 251 VETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEM----------LRSGECPN 300

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
           ++ +L            SV+ ACA+ G   +G+ +H Y+ +     T E SL    +L+ 
Sbjct: 301 DVTLL------------SVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSL--RTSLID 346

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           +Y KCG +  A  +FN M  R L SWNA                               M
Sbjct: 347 MYAKCGDIEAAHQVFNSMLYRSLSSWNA-------------------------------M 375

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-G 448
           I G A +G       LFS+MR    +P D  F G +++C+  G L+ GRQ+   +     
Sbjct: 376 IFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYN 435

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELY 507
               L     +I +    G+ + A  + +TMP   D V W +++ A  +HGN   A    
Sbjct: 436 LTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFA 495

Query: 508 EQMLK 512
           ++++K
Sbjct: 496 QKLIK 500


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 277/770 (35%), Positives = 422/770 (54%), Gaps = 95/770 (12%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLK---LVYARTLFDEIPQPDIVARTTLIAAYSA 93
            HA M+ +G     + +++L+++   S     L YA ++F+   +P+++   T++   ++
Sbjct: 1   THAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLAS 60

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
           S ++         +PL+M     Y  M+      S GH               P+ +TF 
Sbjct: 61  SSDLV--------SPLEM-----YVRMV------SXGHV--------------PNAYTFP 87

Query: 154 SVLSALAL--IVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
            +L + A     EE +Q   +H  V+K G  L      +LIS+Y +            + 
Sbjct: 88  FLLKSCAKSKTFEEGRQ---IHAQVMKLGCELDRYAHTSLISMYAR---------NGRLE 135

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR-- 269
            AR+VFD   +RD +S T ++TGY     + +AR+  D ++E   V+WNA+I+GYV    
Sbjct: 136 DARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCG 195

Query: 270 -----ELKMLMLR--IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
                EL   M+R  ++ DE T  SV+SACA SG   LG+++H  +       +   SL 
Sbjct: 196 YEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGS---SLK 252

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
           + NA + LY KCG V                               + A  LFE +  ++
Sbjct: 253 IVNAFIGLYSKCGDV-------------------------------EIASGLFEGLSCKD 281

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
           ++SW  +I G       +E L LF +M   G  P D      + +CA LGA++ GR +H 
Sbjct: 282 VVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHV 341

Query: 443 QLVH--SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
            +     G  +  +   +LI MYA+CG +EAA+ VFN+M +    SWNAMI     HG  
Sbjct: 342 YIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRA 401

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
             A +L+ +M K GI PD IT + +LSAC+H+GL+  GR  F+++   Y I P  +HY  
Sbjct: 402 NAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGC 461

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
            IDLL  AG F EA+++I  +P +P   IW +LL  C++HGN++L    A++L ++ P +
Sbjct: 462 MIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPEN 521

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEA 680
           +G+YVLLSN+YA  GRW+D AR+R+++  +G+KK PGCS IE+D+ VH F++ D  HP++
Sbjct: 522 SGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQS 581

Query: 681 QAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT 740
           + +Y+ LE++ + + + G+VPDT  VL +ME + KE AL  HSEKLA+AFGL+    G  
Sbjct: 582 REIYRMLEEMDVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTK 641

Query: 741 VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           + V+KNLR+C +CH A K +SK+  REIV RD  RFHHFRDG CSC DYW
Sbjct: 642 LTVVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 691



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 139/498 (27%), Positives = 221/498 (44%), Gaps = 74/498 (14%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R +HA ++  G +   +    LI +Y ++ +L  AR +FD   Q D+V+ T LI  Y++
Sbjct: 102 GRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYAS 161

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
             +V+ AR++F+   +  RD V +NAMIT Y  N     A+ELF++M R +V+PD  T  
Sbjct: 162 RGDVRSARKVFDX--ITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLV 219

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS--VLNALISVYVKCVSSPFVSSRSLMG 211
           SVLSA A     E    ++H T+V    G  +S  ++NA I +Y KC      S      
Sbjct: 220 SVLSACAQSGSIELG-REIH-TLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASG----- 272

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
               +F+ +  +D +SW T++ GY   +    A      M          L SG    ++
Sbjct: 273 ----LFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEM----------LRSGESPNDV 318

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
            ML            SV+ ACA+ G   +G+ +H Y+ +     T   +L    +L+ +Y
Sbjct: 319 TML------------SVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSAL--RTSLIDMY 364

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            KCG +  A  +FN M  + L SWNA++  +                             
Sbjct: 365 AKCGDIEAAHQVFNSMMHKSLSSWNAMIFGF----------------------------- 395

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYD 450
             A +G       LFS+MR  G +P D    G +++C+  G L+ GR +   +       
Sbjct: 396 --AMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNIT 453

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQ 509
             L     +I +    G+ + A  + + MP   D V W +++ A   HGN   A E + Q
Sbjct: 454 PKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELA-ESFAQ 512

Query: 510 MLKEGILPDRITFLTVLS 527
            L E I P+      +LS
Sbjct: 513 KLME-IEPENSGSYVLLS 529


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/514 (44%), Positives = 324/514 (63%), Gaps = 8/514 (1%)

Query: 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
           D FT+  V+ +        +GK VH  +LR       +F L V  +L+ LY KCG++N+A
Sbjct: 133 DYFTFPFVLKSSVELLSVWMGKCVHGLILRIGL----QFDLYVATSLIILYGKCGEINDA 188

Query: 341 RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGE 400
             +F+ M  RD+ SWNA+L+ Y  +G ID A ++FE M  RN++SWT MISG +Q+G  +
Sbjct: 189 GKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQ 248

Query: 401 EGLKLFSQMRLE--GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
           + L LF +M  E  G +P        + +CA L  LE GRQ+H      G +S+ S   A
Sbjct: 249 QALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIA 308

Query: 459 LITMYARCG-VVEAANCVFNTMPNVDS-VSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
           L  MYA+CG +V+A NC      N  + ++WN MI A   +G+G +A+  + +M++ GI 
Sbjct: 309 LTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQ 368

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
           PD ITF  +LS C+H+GLV  G +YF  M   Y I P  +HYA   DLL RAG+ +EA  
Sbjct: 369 PDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASK 428

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636
           ++  +P      IW +LLA CR H N+++   AA +LF L P + G YVLLSNMYA  GR
Sbjct: 429 LVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGR 488

Query: 637 WDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRK 696
           W +  ++R +++ +G KK PGCSWIE++ K H+FL  DT+HP+ + +Y +LE L  +M+ 
Sbjct: 489 WQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKA 548

Query: 697 LGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNA 756
            GY PDT +VLHD+  ++KE+ L  HSEKLAVAFG++  P    +RV KNLRICGDCH A
Sbjct: 549 AGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTA 608

Query: 757 FKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             F+S++ GRE++VRD  RFHHF+ G CSCGDYW
Sbjct: 609 MVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 642



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 163/352 (46%), Gaps = 43/352 (12%)

Query: 79  PDIVARTTLIAAYSASDNVKLAREMFNKTPLK-MRDTVFYNA-MITAYSHNSNGHAAIEL 136
           P I++   +    +  + +KL  ++     L+ ++ T    + M+  Y+ + +  +++ +
Sbjct: 68  PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSV 127

Query: 137 FRDMRRDDVKPDNFTFTSVL-SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           F  +       D FTF  VL S++ L+     +C+  H  +++ G      V  +LI +Y
Sbjct: 128 FNGIG------DYFTFPFVLKSSVELLSVWMGKCV--HGLILRIGLQFDLYVATSLIILY 179

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            KC           +  A +VFD M  RD  SW  ++ GY K+  +DAA    + M    
Sbjct: 180 GKCGE---------INDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRN 230

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEF------------TYTSVISACANSGLFRLGKQ 303
            V+W  +ISGY    L    L +  DE             T  SV+ ACA       G+Q
Sbjct: 231 IVSWTTMISGYSQSGLAQQALSL-FDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQ 289

Query: 304 VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM--PERDLVSWNAILSA 361
           +H    R          +    AL  +Y KCG + +AR+ F+++   E++L++WN +++A
Sbjct: 290 IHELACRMGLNSNASVLI----ALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITA 345

Query: 362 YVSAGLIDEAKSLFEAMRERNL----LSWTVMISGLAQNGYGEEGLKLFSQM 409
           Y S G   +A S F  M +  +    +++T ++SG + +G  + GLK F+ M
Sbjct: 346 YASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHM 397



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 181/393 (46%), Gaps = 49/393 (12%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           + + VH  ++  G +   ++   LI +Y K  ++  A  +FD +   D+ +   L+A Y+
Sbjct: 152 MGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYT 211

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD--VKPDNF 150
            S  +  A  +F + P   R+ V +  MI+ YS +     A+ LF +M ++D  V+P+  
Sbjct: 212 KSGCIDAALAIFERMP--WRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWV 269

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           T  SVL A A +   E+   Q+H    + G     SVL AL ++Y KC S         +
Sbjct: 270 TIMSVLPACAQLSTLERG-RQIHELACRMGLNSNASVLIALTAMYAKCGS---------L 319

Query: 211 GAARRVFDEM--PERDELSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVAWNALISGYV 267
             AR  FD++   E++ ++W TM+T Y    + L A   F                    
Sbjct: 320 VDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTF-------------------- 359

Query: 268 HRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNA 326
            RE  M+   IQ D+ T+T ++S C++SGL  +G +   ++  T +  P  E    V + 
Sbjct: 360 -RE--MIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVAD- 415

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSA---YVSAGLIDEAKSLFEAMRERN 382
              L  + G++ EA  +  +MP     S W ++L+A   + +  + + A      +   N
Sbjct: 416 ---LLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPEN 472

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
             ++ ++ +  A+ G  +E  KL + ++ +G K
Sbjct: 473 TGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTK 505


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 262/683 (38%), Positives = 385/683 (56%), Gaps = 68/683 (9%)

Query: 109 LKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQ 168
           +  R+ V + AMI+  S NS    AI  F  MR     P  F F+S + A A +   E  
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 169 CMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSW 228
             QMHC  +K G G    V + L  +Y KC           M  A +VF+EMP +DE+SW
Sbjct: 61  -KQMHCLALKFGIGSELFVGSNLEDMYSKC---------GAMFDACKVFEEMPCKDEVSW 110

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSV 288
           T M+ GY K                 +G    AL++       KM+   + +D+    S 
Sbjct: 111 TAMIDGYSK-----------------IGEFEEALLAFK-----KMIDEEVTIDQHVLCST 148

Query: 289 ISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
           + AC      + G+ VH+                   ++V L +                
Sbjct: 149 LGACGALKACKFGRSVHS-------------------SVVKLGF---------------- 173

Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE-RNLLSWTVMISGLAQNGYGEEGLKLFS 407
           E D+   NA+   Y  AG ++ A ++F    E RN++S+T +I G  +    E+GL +F 
Sbjct: 174 ESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFV 233

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467
           ++R +G +P ++ F+  I +CA   ALE G QLHAQ++   +D      + L+ MY +CG
Sbjct: 234 ELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCG 293

Query: 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
           ++E A   F+ + +   ++WN++++  GQHG G  AI+++E+M+  G+ P+ ITF+++L+
Sbjct: 294 LLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLT 353

Query: 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSA 587
            C+HAGLV+EG  YF +M   YG+ PGE+HY+  IDLL RAG+  EAK+ I+ +PF+P+A
Sbjct: 354 GCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNA 413

Query: 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647
             W + L  CRIHG+ ++G  AAE+L +L P ++G  VLLSN+YAN  +W+D   VR  M
Sbjct: 414 FGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRM 473

Query: 648 RDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVL 707
           RD  VKK PG SW++V  K HVF  +D +HP   A+Y+ L+ L+ +++  GYVP T  V 
Sbjct: 474 RDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVP 533

Query: 708 HDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGRE 767
            DM+   KE  L  HSE++AVAF L+ +P G  + V KNLR+C DCH+A KF+SKV GR+
Sbjct: 534 LDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRK 593

Query: 768 IVVRDGKRFHHFRDGKCSCGDYW 790
           I+VRD  RFHHF DG CSCGDYW
Sbjct: 594 IIVRDNSRFHHFTDGSCSCGDYW 616



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 126/285 (44%), Gaps = 37/285 (12%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + DI     L   YS + +++ A  +F     + R+ V Y  +I  Y         + +F
Sbjct: 174 ESDIFVGNALTDMYSKAGDMESASNVFG-IDSECRNVVSYTCLIDGYVETEQIEKGLSVF 232

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
            ++RR  ++P+ FTF+S++ A A     E Q  Q+H  V+K        V + L+ +Y K
Sbjct: 233 VELRRQGIEPNEFTFSSLIKACANQAALE-QGTQLHAQVMKINFDEDPFVSSILVDMYGK 291

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C          L+  A + FDE+ +  E++W ++++ + ++     A +  + M +  GV
Sbjct: 292 C---------GLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDR-GV 341

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
             NA+                     T+ S+++ C+++GL   G      + +T      
Sbjct: 342 KPNAI---------------------TFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPG 380

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
           E      + ++ L  + G++ EA++  N+MP E +   W + L A
Sbjct: 381 EEHY---SCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGA 422


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 261/708 (36%), Positives = 400/708 (56%), Gaps = 59/708 (8%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
            TL+A Y      KLA         + RD V +N ++++   N     A+E  R+M  + 
Sbjct: 236 NTLVAMYGKMG--KLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEG 293

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS-VLNALISVYVKCVSSPF 203
           V+PD FT +SVL A + + E  +   ++H   +K+G+    S V +AL+ +Y  C     
Sbjct: 294 VEPDGFTISSVLPACSHL-EMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNC----- 347

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
              + L G   RVFD M +R    W  M+TGY +N+Y + A      M E+ G+  N+  
Sbjct: 348 --KQVLSGC--RVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANST- 402

Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
                               T   V+ AC  SG F   + +H ++++        F   V
Sbjct: 403 --------------------TMAGVVPACVRSGAFSKKEAIHGFVVK-RGLDRDRF---V 438

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
            NAL+ +Y + GK++ A+ IF +M +RDLV+WN I++ YV +   ++A  +   M+    
Sbjct: 439 QNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQ---- 494

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
                    + +    E   ++         KP        + SCA L AL  G+++HA 
Sbjct: 495 ---------ILERKASERASRV-------SLKPNSITLMTILPSCAALSALAKGKEIHAY 538

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
            + +   + ++ G+AL+ MYA+CG ++ +  VF+ +P  + ++WN ++ A G HGN   A
Sbjct: 539 AIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDA 598

Query: 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563
           I++   M+ +G+ P+ +TF++V +AC+H+G+V EG + F  M   YG+ P  DHYA  +D
Sbjct: 599 IDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVD 658

Query: 564 LLCRAGKFSEAKDVIDSLPFK-PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622
           LL RAG+  EA  +I+ +P     A  W +LL  CRIH N+++G  AA+ L QL P+ A 
Sbjct: 659 LLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPNVAS 718

Query: 623 TYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQA 682
            YVLL+N+Y++ G W  A  VR+ M+ +GV+KEPGCSWIE  ++VH F+  D++HP+++ 
Sbjct: 719 HYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEK 778

Query: 683 VYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVR 742
           +  YLE L   MRK GY+PDT  VLH++E D+KE  L  HSEKLA+AFG++    G  +R
Sbjct: 779 LRGYLETLWERMRKEGYIPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIR 838

Query: 743 VLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           V KNLR+C DCH A KF+SKVV REI++RD +RFHHF++G CSCGDYW
Sbjct: 839 VAKNLRVCNDCHLATKFISKVVDREIILRDVRRFHHFKNGTCSCGDYW 886



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 132/539 (24%), Positives = 232/539 (43%), Gaps = 90/539 (16%)

Query: 81  IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
           +    TL+  Y    +     ++F++  +  R+ V +N++I++         A+E FR M
Sbjct: 129 VTVANTLVNLYRKCGDFGAVYKVFDR--ISERNQVSWNSLISSLCSFEKWEMALEAFRCM 186

Query: 141 RRDDVKPDNFTFTSVLSALALIVEEEKQCM--QMHCTVVKSGTGLFTSVLNALISVYVKC 198
             +DV+P +FT  SV  A +     E   M  Q+H   ++ G  L + ++N L+++Y K 
Sbjct: 187 LDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGE-LNSFIINTLVAMYGKM 245

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
                 SS+ L+G+          RD ++W T+++   +N+    A E+L          
Sbjct: 246 --GKLASSKVLLGS-------FEGRDLVTWNTVLSSLCQNEQFLEALEYL---------- 286

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                     RE  M++  ++ D FT +SV+ AC++  + R GK++HAY L+  +     
Sbjct: 287 ----------RE--MVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 334

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
           F   V +ALV +Y  C +V     +F+ M +R +  WNA+++ Y                
Sbjct: 335 F---VGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGY---------------- 375

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSCAGLGALENG 437
                          AQN Y EE L LF +M    G        AG + +C   GA    
Sbjct: 376 ---------------AQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKK 420

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI------ 491
             +H  +V  G D      NAL+ MY+R G ++ A  +F  M + D V+WN +I      
Sbjct: 421 EAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFS 480

Query: 492 -----AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR---YFE 543
                A L  H       +  E+  +  + P+ IT +T+L +C     + +G+    Y  
Sbjct: 481 ERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAI 540

Query: 544 TMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
             +    +  G    +  +D+  + G    ++ V D +P + +   W  ++    +HGN
Sbjct: 541 KNNLATDVAVG----SALVDMYAKCGCLQMSRKVFDQIPIR-NVITWNVIVMAYGMHGN 594



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 153/334 (45%), Gaps = 49/334 (14%)

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
           + M++L I+ D F + +++ A A+     LGKQ+HA++ +         S+ V N LV L
Sbjct: 82  IDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVD---SVTVANTLVNL 138

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y KCG       +F+++ ER+ VSWN+++S+  S          FE         W    
Sbjct: 139 YRKCGDFGAVYKVFDRISERNQVSWNSLISSLCS----------FE--------KW---- 176

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN---GRQLHAQLVHS 447
                    E  L+ F  M  E  +P  +       +C+     E    G+Q+HA  +  
Sbjct: 177 ---------EMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRK 227

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
           G  +S    N L+ MY + G + ++  +  +    D V+WN ++++L Q+     A+E  
Sbjct: 228 GELNSFII-NTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYL 286

Query: 508 EQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG---EDHY--ARFI 562
            +M+ EG+ PD  T  +VL AC+H  +++ G+     +H  Y +  G   E+ +  +  +
Sbjct: 287 REMVLEGVEPDGFTISSVLPACSHLEMLRTGKE----LHA-YALKNGSLDENSFVGSALV 341

Query: 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           D+ C   +      V D + F     +W A++ G
Sbjct: 342 DMYCNCKQVLSGCRVFDGM-FDRKIGLWNAMITG 374



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 99/200 (49%), Gaps = 6/200 (3%)

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
           W  ++    ++    E +  +  M + G KP ++AF   + + A L  ++ G+Q+HA + 
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 446 HSGYD-SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
             GY   S++  N L+ +Y +CG   A   VF+ +   + VSWN++I++L        A+
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH---YARF 561
           E +  ML E + P   T ++V  AC++  +  EG    + +H  YG+  GE +       
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALACSNFPM-PEGLLMGKQVHA-YGLRKGELNSFIINTL 238

Query: 562 IDLLCRAGKFSEAKDVIDSL 581
           + +  + GK + +K ++ S 
Sbjct: 239 VAMYGKMGKLASSKVLLGSF 258



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 144/333 (43%), Gaps = 61/333 (18%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           S   ++H  ++  G      + N L+D+Y +  K+  A+ +F ++   D+V   T+I  Y
Sbjct: 418 SKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGY 477

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
             S+  + A  M +K  +  R                             R  +KP++ T
Sbjct: 478 VFSERHEDALLMLHKMQILERKAS----------------------ERASRVSLKPNSIT 515

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             ++L + A +    K   ++H   +K+      +V +AL+ +Y KC           + 
Sbjct: 516 LMTILPSCAALSALAKG-KEIHAYAIKNNLATDVAVGSALVDMYAKC---------GCLQ 565

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            +R+VFD++P R+ ++W  ++  Y              GM  N   A +          L
Sbjct: 566 MSRKVFDQIPIRNVITWNVIVMAY--------------GMHGNSQDAIDM---------L 602

Query: 272 KMLMLR-IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
           +M+M++ ++ +E T+ SV +AC++SG+   G ++  Y ++ +    P  S      +V L
Sbjct: 603 RMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIF-YNMKKDYGVEP--SSDHYACVVDL 659

Query: 331 YWKCGKVNEARDIFNQMPER--DLVSWNAILSA 361
             + G+V EA  + N +P       +W+++L A
Sbjct: 660 LGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGA 692


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 249/584 (42%), Positives = 349/584 (59%), Gaps = 35/584 (5%)

Query: 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV 267
           S M  A ++FDE+PE D  S+  M++ YV+N   + A+ F D M      +WN +I+GY 
Sbjct: 107 SRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYA 166

Query: 268 HRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327
            R                               G+   A  L        E S    NA+
Sbjct: 167 RR-------------------------------GEMEKARELFYSMMEKNEVSW---NAM 192

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR-ERNLLSW 386
           ++ Y +CG + +A   F   P R +V+W A+++ Y+ A  ++ A+++F+ M   +NL++W
Sbjct: 193 ISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTW 252

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
             MISG  +N   E+GLKLF  M  EG +P     + A+  C+ L AL+ GRQ+H  +  
Sbjct: 253 NAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSK 312

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
           S   + ++A  +LI+MY +CG +  A  +F  M   D V+WNAMI+   QHGN  +A+ L
Sbjct: 313 STLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCL 372

Query: 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
           + +M+   I PD ITF+ VL ACNHAGLV  G  YFE+M   Y + P  DHY   +DLL 
Sbjct: 373 FREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLG 432

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626
           RAGK  EA  +I S+PF+P A ++  LL  CR+H N++L   AAE+L QL   +A  YV 
Sbjct: 433 RAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQ 492

Query: 627 LSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKY 686
           L+N+YA+  RW+D ARVRK M++  V K PG SWIE+ NKVH F   D  HPE  +++K 
Sbjct: 493 LANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKK 552

Query: 687 LEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKN 746
           L++L  +M+  GY P+ +F LH++E +QKE  L  HSEKLAVAFG +KLP G+ ++V KN
Sbjct: 553 LKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKN 612

Query: 747 LRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           LRICGDCH A KF+S++  REI+VRD  RFHHF+DG CSCGDYW
Sbjct: 613 LRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 168/386 (43%), Gaps = 76/386 (19%)

Query: 28  PITSSLARSVHAHMISS------GFKPREHII--NRLIDIYCKSLKLVYARTLFDEIPQP 79
           P+   +AR V +  I        G + +  I   + LI I     +++ A  LFDEIP+P
Sbjct: 63  PLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEP 122

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D  +   +++ Y  + N + A+  F++ P K  D   +N MIT Y+       A ELF  
Sbjct: 123 DTFSYNIMLSCYVRNVNFEKAQSFFDRMPFK--DAASWNTMITGYARRGEMEKARELFYS 180

Query: 140 -MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
            M +++V                                           NA+IS Y++C
Sbjct: 181 MMEKNEVS-----------------------------------------WNAMISGYIEC 199

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG-V 257
                      +  A   F   P R  ++WT M+TGY+K   ++ A      M+ N   V
Sbjct: 200 GD---------LEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLV 250

Query: 258 AWNALISGYVHR---ELKMLMLRIQLDEFT------YTSVISACANSGLFRLGKQVHAYL 308
            WNA+ISGYV     E  + + R  L+E         +S +  C+     +LG+Q+H  +
Sbjct: 251 TWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIV 310

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
               +K T    +    +L+++Y KCG++ +A  +F  M ++D+V+WNA++S Y   G  
Sbjct: 311 ----SKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNA 366

Query: 369 DEAKSLFEAMRERNLL-SWTVMISGL 393
           D+A  LF  M +  +   W   ++ L
Sbjct: 367 DKALCLFREMIDNKIRPDWITFVAVL 392



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 135/304 (44%), Gaps = 50/304 (16%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
           N +I  Y +   L  A   F   P   +VA T +I  Y  +  V+LA  MF    +  ++
Sbjct: 190 NAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVN-KN 248

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV------LSALALIVEEEK 167
            V +NAMI+ Y  NS     ++LFR M  + ++P++   +S       LSAL L      
Sbjct: 249 LVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQL------ 302

Query: 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS 227
              Q+H  V KS      + L +LIS+Y KC           +G A ++F+ M ++D ++
Sbjct: 303 -GRQIHQIVSKSTLCNDVTALTSLISMYCKC---------GELGDAWKLFEVMKKKDVVA 352

Query: 228 WTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTS 287
           W  M++GY ++   D A      M +N                      +I+ D  T+ +
Sbjct: 353 WNAMISGYAQHGNADKALCLFREMIDN----------------------KIRPDWITFVA 390

Query: 288 VISACANSGLFRLGKQVHAYLLRT-EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
           V+ AC ++GL  +G      ++R  + +P P+        +V L  + GK+ EA  +   
Sbjct: 391 VLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHY----TCMVDLLGRAGKLEEALKLIRS 446

Query: 347 MPER 350
           MP R
Sbjct: 447 MPFR 450



 Score = 47.4 bits (111), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 33/126 (26%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R +H  +  S        +  LI +YCK  +L  A  LF+ + + D+VA         
Sbjct: 302 LGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVA--------- 352

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                   +NAMI+ Y+ + N   A+ LFR+M  + ++PD  TF
Sbjct: 353 ------------------------WNAMISGYAQHGNADKALCLFREMIDNKIRPDWITF 388

Query: 153 TSVLSA 158
            +VL A
Sbjct: 389 VAVLLA 394


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 266/768 (34%), Positives = 404/768 (52%), Gaps = 118/768 (15%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           +L + VH   +  G      + N LI++YCK  K  +ART+FD + +             
Sbjct: 332 ALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSE------------- 378

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                               RD + +N++I   + N     A+ LF  + R  +KPD +T
Sbjct: 379 --------------------RDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYT 418

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
            TSVL A + + E      Q+H   +K                 +  VS  FVS      
Sbjct: 419 MTSVLKAASSLPEGLSLSKQVHVHAIK-----------------INNVSDSFVS------ 455

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV---- 267
                            T ++  Y +N  +  A    +  + ++ VAWNA+++GY     
Sbjct: 456 -----------------TALIDAYSRNRCMKEAEILFERHNFDL-VAWNAMMAGYTQSHD 497

Query: 268 -HRELKMLMLRIQL----DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
            H+ LK+  L  +     D+FT  +V   C        GKQVHAY +++           
Sbjct: 498 GHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKS----------- 546

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
                              D+       DL   + IL  YV  G +  A+  F+++   +
Sbjct: 547 -----------------GYDL-------DLWVSSGILDMYVKCGDMSAAQFAFDSIPVPD 582

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
            ++WT MISG  +NG  E    +FSQMRL G  P ++  A    + + L ALE GRQ+HA
Sbjct: 583 DVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHA 642

Query: 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
             +     +    G +L+ MYA+CG ++ A C+F  +  ++  +WNAM+  L QHG G  
Sbjct: 643 NALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKE 702

Query: 503 AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562
            ++L++QM   GI PD++TF+ VLSAC+H+GLV E  ++  +MHG YGI P  +HY+   
Sbjct: 703 TLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLA 762

Query: 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622
           D L RAG   +A+++I+S+  + SA ++  LLA CR+ G+ + G + A +L +L P  + 
Sbjct: 763 DALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSS 822

Query: 623 TYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQA 682
            YVLLSNMYA   +WD+    R +M+   VKK+PG SWIEV NK+H+F+VDD ++ + + 
Sbjct: 823 AYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTEL 882

Query: 683 VYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVR 742
           +Y+ ++ ++ ++++ GYVP+T F L D+E ++KE AL  HSEKLAVAFGL+  P    +R
Sbjct: 883 IYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIR 942

Query: 743 VLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           V+KNLR+CGDCHNA K+++KV  REIV+RD  RFH F+DG CSCGDYW
Sbjct: 943 VIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990



 Score =  188 bits (478), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 173/692 (25%), Positives = 297/692 (42%), Gaps = 119/692 (17%)

Query: 7   DYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKL 66
           D + T     +  L+LC     + +S   S H +    G    E +   L++IY K  K+
Sbjct: 139 DVVYTSRMTLSPMLKLCLHSGYVWAS--ESFHGYACKIGLDGDEFVAGALVNIYLKFGKV 196

Query: 67  VYARTLFDEIPQPDIVARTTLIAAY----SASDNVKLAREM----FNKTPLKMR------ 112
              + LF+E+P  D+V    ++ AY       + + L+        N   + +R      
Sbjct: 197 KEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARIS 256

Query: 113 ----------------------DTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
                                 + +F N  ++ Y H+    A ++ F DM   DV+ D  
Sbjct: 257 GDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQV 316

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           TF  +L A A+ V+      Q+HC  +K G  L  +V N+LI++Y K             
Sbjct: 317 TFILML-ATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRK---------F 366

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
           G AR VFD M ERD +SW +++                       G+A N L    V   
Sbjct: 367 GFARTVFDNMSERDLISWNSVIA----------------------GIAQNGLEVEAVCLF 404

Query: 271 LKMLMLRIQLDEFTYTSVISACAN--SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALV 328
           +++L   ++ D++T TSV+ A ++   GL  L KQVH + ++     +  F   V+ AL+
Sbjct: 405 MQLLRCGLKPDQYTMTSVLKAASSLPEGL-SLSKQVHVHAIKIN-NVSDSF---VSTALI 459

Query: 329 TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV 388
             Y +   + EA  +F +    DLV+WNA                               
Sbjct: 460 DAYSRNRCMKEAEILFER-HNFDLVAWNA------------------------------- 487

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG 448
           M++G  Q+  G + LKLF+ M  +G +  D+  A    +C  L A+  G+Q+HA  + SG
Sbjct: 488 MMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSG 547

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
           YD  L   + ++ MY +CG + AA   F+++P  D V+W  MI+   ++G   RA  ++ 
Sbjct: 548 YDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFS 607

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG-PYGIPPGEDHY--ARFIDLL 565
           QM   G+LPD  T  T+  A +    +++GR+    +H     +    D +     +D+ 
Sbjct: 608 QMRLMGVLPDEFTIATLAKASSCLTALEQGRQ----IHANALKLNCTNDPFVGTSLVDMY 663

Query: 566 CRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL-MPHHAGTY 624
            + G   +A  +   +    +   W A+L G   HG     +Q  +Q+  L +     T+
Sbjct: 664 AKCGSIDDAYCLFKRIEMM-NITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTF 722

Query: 625 VLLSNMYANLGRWDDAAR-VRKLMRDRGVKKE 655
           + + +  ++ G   +A + +R +  D G+K E
Sbjct: 723 IGVLSACSHSGLVSEAYKHMRSMHGDYGIKPE 754



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 159/643 (24%), Positives = 257/643 (39%), Gaps = 135/643 (20%)

Query: 26  RNPITSS---LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIV 82
           RN ITSS   L +  HA +++    P   +IN LI +Y K   L YAR +FD++P  D+V
Sbjct: 47  RNAITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLV 106

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR 142
           +  +++AAY+ S    +                             N   A  LFR +R+
Sbjct: 107 SWNSILAAYAQSSECVV----------------------------ENIQQAFLLFRILRQ 138

Query: 143 DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSP 202
           D V     T + +L  L L           H    K G      V  AL+++Y+K     
Sbjct: 139 DVVYTSRMTLSPMLK-LCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKF---- 193

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV----KNDYLDAAREF----------- 247
                  +   + +F+EMP RD + W  M+  Y+    K + +D +  F           
Sbjct: 194 -----GKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEIT 248

Query: 248 ------LDGMSENVG-----------------VAWNALISGYVHRELKMLMLR------- 277
                 + G   + G                 +  N  +S Y+H      +L+       
Sbjct: 249 LRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVE 308

Query: 278 --IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG 335
             ++ D+ T+  +++         LG+QVH   L    K   +  L V+N+L+ +Y K  
Sbjct: 309 SDVECDQVTFILMLATAVKVDSLALGQQVHCMAL----KLGLDLMLTVSNSLINMYCKLR 364

Query: 336 KVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQ 395
           K   AR +F+ M ERDL+SWN++                               I+G+AQ
Sbjct: 365 KFGFARTVFDNMSERDLISWNSV-------------------------------IAGIAQ 393

Query: 396 NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL-GALENGRQLHAQLVHSGYDSSLS 454
           NG   E + LF Q+   G KP  Y     + + + L   L   +Q+H   +     S   
Sbjct: 394 NGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSF 453

Query: 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
              ALI  Y+R   ++ A  +F    N D V+WNAM+A   Q  +G + ++L+  M K+G
Sbjct: 454 VSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQG 512

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH----YARFIDLLCRAGK 570
              D  T  TV   C     + +G++    +H  Y I  G D      +  +D+  + G 
Sbjct: 513 ERSDDFTLATVFKTCGFLFAINQGKQ----VHA-YAIKSGYDLDLWVSSGILDMYVKCGD 567

Query: 571 FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
            S A+   DS+P  P    W  +++GC  +G  +       Q+
Sbjct: 568 MSAAQFAFDSIPV-PDDVAWTTMISGCIENGEEERAFHVFSQM 609


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 263/747 (35%), Positives = 410/747 (54%), Gaps = 97/747 (12%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
           N++  +  + +KL Y   L         +   TL+ +Y  S+ + LA ++F + P    D
Sbjct: 166 NQITQVQTQIIKLGYDSRL---------IVGNTLVDSYCKSNRLDLACQLFKEMP--EID 214

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMH 173
           +V YNAMIT YS +     A+ LF +M+   +KP  FTF +VL A  + +++     Q+H
Sbjct: 215 SVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCA-NIGLDDIVLGQQIH 273

Query: 174 CTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMT 233
             V+K+       V NAL+  Y K                                    
Sbjct: 274 SFVIKTNFVWNVFVSNALLDFYSK------------------------------------ 297

Query: 234 GYVKNDYLDAAREFLDGMSENVGVAWNALISGYV----HRELKMLMLRIQL-----DEFT 284
               +D +  AR+  D M E  GV++N +ISGY     H+    L   +Q       +F 
Sbjct: 298 ----HDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFP 353

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           + +++S  +N+  + +G+Q+HA  + T    T +  + V N+LV +Y KCGK        
Sbjct: 354 FATMLSIASNTLDWEMGRQIHAQTIVT----TADSEILVGNSLVDMYAKCGK-------- 401

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
                                   +EA+ +F  +  R+ + WT MIS   Q G+ EEGL+
Sbjct: 402 -----------------------FEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQ 438

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           LF++MR          FA  + + A + +L  G+QLH+ ++ SG+ S++ +G+AL+ +YA
Sbjct: 439 LFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYA 498

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           +CG ++ A   F  MP+ + VSWNAMI+A  Q+G     ++ +++M+  G+ PD ++FL 
Sbjct: 499 KCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLG 558

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584
           VLSAC+H+GLV+EG  +F +M   Y + P  +HYA  +D+LCR+G+F+EA+ ++  +P  
Sbjct: 559 VLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPID 618

Query: 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP-HHAGTYVLLSNMYANLGRWDDAARV 643
           P   +W ++L  CRIH N +L  +AA+QLF +     A  YV +SN+YA  G+W++ ++V
Sbjct: 619 PDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKV 678

Query: 644 RKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDT 703
            K MRDRGVKK P  SW+E+ ++ H+F  +D  HP+ + + K ++ L   M +LGY PDT
Sbjct: 679 HKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDT 738

Query: 704 KFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKV 763
              LH+ +   K  +L  HSE+LA+AF L+  P G+ + V+KNLR C DCH A K +SK+
Sbjct: 739 SCALHNEDEKFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKI 798

Query: 764 VGREIVVRDGKRFHHFRDGKCSCGDYW 790
           VGREI VRD  RFHHFRDG CSCGD+W
Sbjct: 799 VGREITVRDSTRFHHFRDGFCSCGDFW 825



 Score =  203 bits (517), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 153/584 (26%), Positives = 275/584 (47%), Gaps = 75/584 (12%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           ++  ++ A ++ +GF P     N  +  + K+ +L  AR LF+++P  + V+   +I+ Y
Sbjct: 34  NVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGY 93

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
             S N+  AR++F+   +  R  V +  +I  YS  +    A ELF  M+R   +PD  T
Sbjct: 94  VKSGNLGEARKLFD--GMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVT 151

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           F ++LS      E   Q  Q+   ++K G      V N L+  Y K       S+R  + 
Sbjct: 152 FVTLLSGCNG-HEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCK-------SNR--LD 201

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A ++F EMPE D +S+  M+TGY K           DG+ E             V+  +
Sbjct: 202 LACQLFKEMPEIDSVSYNAMITGYSK-----------DGLDEKA-----------VNLFV 239

Query: 272 KMLMLRIQLDEFTYTSVISACANSGL--FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
           +M    ++  EFT+ +V+  CAN GL    LG+Q+H+++++T       +++ V+NAL+ 
Sbjct: 240 EMQNSGLKPTEFTFAAVL--CANIGLDDIVLGQQIHSFVIKTNFV----WNVFVSNALLD 293

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
            Y K   V +AR +F++MPE+D VS+N                               V+
Sbjct: 294 FYSKHDSVIDARKLFDEMPEQDGVSYN-------------------------------VI 322

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           ISG A +G  +    LF +++   F    + FA  ++  +     E GRQ+HAQ + +  
Sbjct: 323 ISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTA 382

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
           DS +  GN+L+ MYA+CG  E A  +F  + +  +V W AMI+A  Q G     ++L+ +
Sbjct: 383 DSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNK 442

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
           M +  ++ D+ TF ++L A      +  G++   +     G        +  +D+  + G
Sbjct: 443 MRQASVIADQATFASLLRASASIASLSLGKQ-LHSFIIKSGFMSNVFSGSALLDVYAKCG 501

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
              +A      +P +     W A+++    +G  +  +++ +++
Sbjct: 502 SIKDAVQTFQEMPDRNIVS-WNAMISAYAQNGEAEATLKSFKEM 544


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 282/741 (38%), Positives = 407/741 (54%), Gaps = 72/741 (9%)

Query: 52  IINRLIDIYC--KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPL 109
           I NRLI  +   K LK ++A  L   + +   +    L  +++   N   +  + ++T  
Sbjct: 12  IKNRLIQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFG-NTNYSFRILDQT-- 68

Query: 110 KMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC 169
           K  +   +N MI     N     +IE++  MR++ + PD+FTF  VL A A +++ E   
Sbjct: 69  KEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELG- 127

Query: 170 MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWT 229
           ++MH  VVK+G      V  +LI++Y KC           +  A +VFD++P+++  SWT
Sbjct: 128 VKMHSLVVKAGCEADAFVKISLINLYTKC---------GFIDNAFKVFDDIPDKNFASWT 178

Query: 230 TMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVI 289
             ++GYV    +   RE +D                      ++L + ++ D F+   V+
Sbjct: 179 ATISGYVG---VGKCREAIDMFR-------------------RLLEMGLRPDSFSLVEVL 216

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
           SAC  +G  R G+ +  Y+  TE       ++ V  ALV  Y KCG +  AR +F+ M E
Sbjct: 217 SACKRTGDLRSGEWIDEYI--TENGMVR--NVFVATALVDFYGKCGNMERARSVFDGMLE 272

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
           +++VSW++++  Y S GL  EA                               L LF +M
Sbjct: 273 KNIVSWSSMIQGYASNGLPKEA-------------------------------LDLFFKM 301

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
             EG KP  YA  G + SCA LGALE G      +  + +  +   G ALI MYA+CG +
Sbjct: 302 LNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRM 361

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           + A  VF  M   D V WNA I+ L   G+   A+ L+ QM K GI PDR TF+ +L AC
Sbjct: 362 DRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCAC 421

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
            HAGLV+EGRRYF +M   + + P  +HY   +DLL RAG   EA  +I S+P + +A +
Sbjct: 422 THAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIV 481

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
           W ALL GCR+H +  L     ++L  L P H+G YVLLSN+YA   +W++AA++R +M +
Sbjct: 482 WGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSE 541

Query: 650 RGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHD 709
           RGVKK PG SWIEVD  VH FLV DT+HP ++ +Y  L +L  +++  GYVP T  VL D
Sbjct: 542 RGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDLKAAGYVPTTDHVLFD 601

Query: 710 MESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIV 769
           +E ++KE+ +  HSEKLAVAFGL+       + V+KNLR+CGDCH A K +S++ GREI+
Sbjct: 602 IEEEEKEHFIGCHSEKLAVAFGLISTAPNDKILVVKNLRVCGDCHEAIKHISRIAGREII 661

Query: 770 VRDGKRFHHFRDGKCSCGDYW 790
           VRD  RFH F DG CSC DYW
Sbjct: 662 VRDNNRFHCFTDGLCSCKDYW 682


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 262/699 (37%), Positives = 392/699 (56%), Gaps = 56/699 (8%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           AR +HA +I + F     I NRL+D Y K      AR +FD +PQ +  +   +++  + 
Sbjct: 38  ARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTK 97

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
              +  A  +F   P    D   +NAM++ ++ +     A+  F DM  +D   + ++F 
Sbjct: 98  FGKLDEAFNVFKSMPEP--DQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFG 155

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           S LSA A +  +    +Q+H  + KS   L   + +AL+ +Y KC          ++  A
Sbjct: 156 SALSACAGLT-DLNMGIQIHALISKSRYLLDVYMGSALVDMYSKC---------GVVACA 205

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           +R FD M  R+ +SW +++T Y +N     A E    M +N                   
Sbjct: 206 QRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDN------------------- 246

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
               ++ DE T  SV+SACA+    R G Q+HA +++ +        L + NALV +Y K
Sbjct: 247 ---GVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRN---DLVLGNALVDMYAK 300

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
           C +VNEAR +F++MP R++VS  +++  Y  A  +  A+ +F  M E+N++SW  +I+G 
Sbjct: 301 CRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGY 360

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV------HS 447
            QNG  EE ++LF  ++ E   P  Y F   + +CA L  L+ GRQ H Q++       S
Sbjct: 361 TQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQS 420

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
           G +S +  GN+LI MY +CG+VE    VF  M   D VSWNAMI    Q+G G  A+E++
Sbjct: 421 GEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIF 480

Query: 508 EQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR 567
            +ML  G  PD +T + VLSAC+HAGLV+EGRRYF +M    G+ P +DH+   +DLL R
Sbjct: 481 RKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGR 540

Query: 568 AGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627
           AG   EA D+I ++P +P   +W +LLA C++HGNI+LG   AE+L ++ P ++G YVLL
Sbjct: 541 AGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLL 600

Query: 628 SNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYL 687
           SNMYA LGRW D  RVRK MR RGV K+PGCSWIE+ ++VHVF+V D  HP  + ++  L
Sbjct: 601 SNMYAELGRWKDVVRVRKQMRQRGVIKQPGCSWIEIQSRVHVFMVKDKRHPLKKDIHLVL 660

Query: 688 EQLVLEMRKLGYVP------------DTKFVLH-DMESD 713
           + L  +M+  GYVP            D++ VLH +ME++
Sbjct: 661 KFLTEQMKWAGYVPEADDDEICEEESDSELVLHFEMETE 699



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 118/428 (27%), Positives = 210/428 (49%), Gaps = 60/428 (14%)

Query: 1   MMMKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHII--NRLID 58
           MMM N   +       AS +  C   + I   L   +HA ++    K R  ++  N L+D
Sbjct: 242 MMMDNG--VEPDEITLASVVSACASWSAIREGL--QIHARVVKRD-KYRNDLVLGNALVD 296

Query: 59  IYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYN 118
           +Y K  ++  AR +FD +P  ++V+ T+++  Y+ + +VK AR MF+   +  ++ V +N
Sbjct: 297 MYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSN--MMEKNVVSWN 354

Query: 119 AMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVK 178
           A+I  Y+ N     A+ LF  ++R+ + P ++TF ++L+A A +  + K   Q H  ++K
Sbjct: 355 ALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLA-DLKLGRQAHTQILK 413

Query: 179 SG----TGLFTSVL--NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMM 232
            G    +G  + +   N+LI +Y+KC          ++     VF+ M ERD +SW  M+
Sbjct: 414 HGFWFQSGEESDIFVGNSLIDMYMKC---------GMVEDGCLVFERMVERDVVSWNAMI 464

Query: 233 TGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISAC 292
            GY +N Y   A E    M          L+SG             + D  T   V+SAC
Sbjct: 465 VGYAQNGYGTNALEIFRKM----------LVSGQ------------KPDHVTMIGVLSAC 502

Query: 293 ANSGLFRLGKQVHAYLLRTEAKPTP---EFSLPVNNALVTLYWKCGKVNEARDIFNQMP- 348
           +++GL   G++ + + +RTE    P    F+      +V L  + G ++EA D+   MP 
Sbjct: 503 SHAGLVEEGRR-YFHSMRTELGLAPMKDHFT-----CMVDLLGRAGCLDEANDLIQTMPM 556

Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS---WTVMISGLAQNGYGEEGLKL 405
           + D V W ++L+A    G I+  K + E + E + L+   + ++ +  A+ G  ++ +++
Sbjct: 557 QPDNVVWGSLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRV 616

Query: 406 FSQMRLEG 413
             QMR  G
Sbjct: 617 RKQMRQRG 624



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 66/126 (52%), Gaps = 4/126 (3%)

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
           FA  + SC    +  + R++HA+++ + + S +   N L+  Y +CG  E A  VF+ MP
Sbjct: 22  FAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMP 81

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
             ++ S+NA+++ L + G    A  +++ M +    PD+ ++  ++S        +E  R
Sbjct: 82  QRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPE----PDQCSWNAMVSGFAQHDRFEEALR 137

Query: 541 YFETMH 546
           +F  MH
Sbjct: 138 FFVDMH 143


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 244/629 (38%), Positives = 364/629 (57%), Gaps = 53/629 (8%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           Q+H  ++ SG      + N L+++Y KC           +  A  +F  MP ++ +S   
Sbjct: 73  QLHSLIITSGCSSDKFISNHLLNLYSKC---------GQLDTAITLFGVMPRKNIMSCNI 123

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLD 281
           ++ GY ++     AR+  D M E     WNA+++G +  E          +M  L    D
Sbjct: 124 LINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPD 183

Query: 282 EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEAR 341
           EF   SV+  CA       G+QVH Y+     K   EF+L V ++L  +Y KCG +    
Sbjct: 184 EFALGSVLRGCAGLRALVAGRQVHGYV----RKCGFEFNLVVVSSLAHMYMKCGSLG--- 236

Query: 342 DIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEE 401
                                       E + L  AM  +N+++W  +I+G AQNGY EE
Sbjct: 237 ----------------------------EGERLIRAMPSQNVVAWNTLIAGRAQNGYPEE 268

Query: 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALIT 461
            L  ++ M++ GF+P    F   I+SC+ L  L  G+Q+HA+++ +G    +S  ++LI+
Sbjct: 269 VLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLIS 328

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           MY+RCG +E +  VF    N D V W++MIAA G HG G  AI+L+ QM +E +  + +T
Sbjct: 329 MYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVT 388

Query: 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581
           FL++L AC+H GL ++G ++F+ M   YG+ P  +HY   +DLL R G   EA+ +I S+
Sbjct: 389 FLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSM 448

Query: 582 PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAA 641
           P K     W+ LL+ C+IH   ++  + +E++F+L P     YVLLSN++A+  RWDD +
Sbjct: 449 PVKADVITWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVPYVLLSNIHASDKRWDDVS 508

Query: 642 RVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVP 701
            VRK MRDR +KKEPG SW+EV N++H F + D +HP++  +  YL +L  EM+K GYVP
Sbjct: 509 DVRKAMRDRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEIASYLRELTSEMKKRGYVP 568

Query: 702 DTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMS 761
           D   VLHDM+ + KEY+L  HSEKLA+AF L+  P G  +RV+KNLR+C DCH A K++S
Sbjct: 569 DIDSVLHDMDVEDKEYSLVHHSEKLAIAFALLYTPVGTPIRVIKNLRVCSDCHVAIKYIS 628

Query: 762 KVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           ++  REI+VRD  RFHHF++G+CSCGDYW
Sbjct: 629 EISNREIIVRDSSRFHHFKNGRCSCGDYW 657



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 85/256 (33%), Positives = 150/256 (58%), Gaps = 4/256 (1%)

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           ++ ++ +C +     LGKQ+H+ L+ T    + +F   ++N L+ LY KCG+++ A  +F
Sbjct: 55  FSHLLQSCISENSLSLGKQLHS-LIITSGCSSDKF---ISNHLLNLYSKCGQLDTAITLF 110

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
             MP ++++S N +++ Y  +G    A+ +F+ M ERN+ +W  M++GL Q  + EEGL 
Sbjct: 111 GVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLG 170

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           LFS+M   GF P ++A    +  CAGL AL  GRQ+H  +   G++ +L   ++L  MY 
Sbjct: 171 LFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYM 230

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           +CG +     +   MP+ + V+WN +IA   Q+G     ++ Y  M   G  PD+ITF++
Sbjct: 231 KCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVS 290

Query: 525 VLSACNHAGLVKEGRR 540
           V+S+C+    + +G++
Sbjct: 291 VISSCSELATLGQGQQ 306



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 124/509 (24%), Positives = 221/509 (43%), Gaps = 73/509 (14%)

Query: 6   ADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLK 65
           + +I +  + ++  LQ C   N +  SL + +H+ +I+SG    + I N L+++Y K  +
Sbjct: 45  SSHIWSEPSLFSHLLQSCISENSL--SLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQ 102

Query: 66  LVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYS 125
           L  A TLF  +P+ +I++   LI  Y  S +   AR+MF++ P   R+   +NAM+    
Sbjct: 103 LDTAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMP--ERNVATWNAMVAGLI 160

Query: 126 HNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFT 185
                   + LF  M      PD F   SVL   A +        Q+H  V K G     
Sbjct: 161 QFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGL-RALVAGRQVHGYVRKCGFEFNL 219

Query: 186 SVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245
            V+++L  +Y+KC S         +G   R+   MP ++ ++W T++ G  +N Y     
Sbjct: 220 VVVSSLAHMYMKCGS---------LGEGERLIRAMPSQNVVAWNTLIAGRAQNGY---PE 267

Query: 246 EFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
           E LD  +                    M M   + D+ T+ SVIS+C+       G+Q+H
Sbjct: 268 EVLDQYN-------------------MMKMAGFRPDKITFVSVISSCSELATLGQGQQIH 308

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365
           A +++  A       + V ++L+++Y +CG +  +  +F +    D+V W+++++AY   
Sbjct: 309 AEVIKAGA----SLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAY--- 361

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425
                                         +G G E + LF+QM  E  +  D  F   +
Sbjct: 362 ----------------------------GFHGRGVEAIDLFNQMEQEKLEANDVTFLSLL 393

Query: 426 TSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVD 483
            +C+  G  E G +    +V   G    L     ++ +  R G VE A  +  +MP   D
Sbjct: 394 YACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKAD 453

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLK 512
            ++W  +++A   H     A  + E++ +
Sbjct: 454 VITWKTLLSACKIHKKTEMARRISEEVFR 482


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 265/720 (36%), Positives = 392/720 (54%), Gaps = 88/720 (12%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           ++ A T ++  Y+    V+ A +MF++ P   RD V +N +I+ Y+ N  G  A+EL   
Sbjct: 209 NVFAMTGVVNMYAKCRLVEEAYKMFDRMP--ERDLVCWNTIISGYAQNGFGKTALELVLR 266

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M+ +  +PD+ T  S+L A+A  V   +    +H   +++G   F +V  AL+ +Y KC 
Sbjct: 267 MQEEGKRPDSITIVSILPAVA-DVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCG 325

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
           S         +G AR +FD M            TG                      V+W
Sbjct: 326 S---------VGTARLIFDRM------------TG-------------------KTVVSW 345

Query: 260 NALISGYVHR-------EL--KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
           N++I GYV         E+  KM+  ++++   T    + ACA+ G    G+ VH  L +
Sbjct: 346 NSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQ 405

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
            E        + V N+L+++Y KC +V                               D 
Sbjct: 406 LELGS----DVSVMNSLISMYSKCKRV-------------------------------DI 430

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
           A  +FE ++ + L+SW  MI G AQNG   E +  F +M+L+  KP  +     I + A 
Sbjct: 431 AAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAE 490

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
           L  L   + +H  ++ +  D ++    AL+ MYA+CG V  A  +F+ M      +WNAM
Sbjct: 491 LSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAM 550

Query: 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
           I   G HG G  A+EL+E+M KE I P+ +TFL VLSAC+H+GLV+EG +YF +M   YG
Sbjct: 551 IDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYG 610

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
           + P  DHY   +DLL RA + +EA D I  +P +P+  ++ A+L  CRIH N++LG +AA
Sbjct: 611 LEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAA 670

Query: 611 EQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVF 670
            ++F L P   G +VLL+N+YA    WD  ARVR  M  +G++K PG S +E+ N+VH F
Sbjct: 671 NRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTF 730

Query: 671 LVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAF 730
               T+HP+A+ +Y +LE L   ++  GY+PDT  V HD+E   KE  L++HSEKLA+AF
Sbjct: 731 YSGTTSHPQAKKIYAFLETLGNRIKAAGYMPDTNSV-HDVEDVVKEQLLNSHSEKLAIAF 789

Query: 731 GLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            L+    G T+ + KNLR+CGDCHNA K++S V  REI+VRD +RFHHF+DG CSCGDYW
Sbjct: 790 SLLNTSPGTTIHLRKNLRVCGDCHNATKYISLVTKREIIVRDMRRFHHFKDGTCSCGDYW 849



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 144/547 (26%), Positives = 237/547 (43%), Gaps = 101/547 (18%)

Query: 84  RTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD 143
           +T L++ +    ++  A  +F   P++ +    Y+ M+  Y+ NS+   A+  F  MR D
Sbjct: 112 QTKLVSLFCKFGSLHEAARVFQ--PIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYD 169

Query: 144 DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
            V+P  + FT +L       +  K   ++HC ++ +G       +  ++++Y KC     
Sbjct: 170 GVRPVVYNFTYLLKVCGDNADLRKG-KEIHCQLIVNGFASNVFAMTGVVNMYAKC----- 223

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
                L+  A ++FD MPERD                                V WN +I
Sbjct: 224 ----RLVEEAYKMFDRMPERDL-------------------------------VCWNTII 248

Query: 264 SGYVHRELKM----LMLRIQ-----LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
           SGY           L+LR+Q      D  T  S++ A A+ G  R+G+ +H Y +R    
Sbjct: 249 SGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGF- 307

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
              E  + V+ ALV +Y KCG V  AR I                               
Sbjct: 308 ---ESFVNVSTALVDMYSKCGSVGTARLI------------------------------- 333

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
           F+ M  + ++SW  MI G  QNG     +++F +M  E  +  +    GA+ +CA LG +
Sbjct: 334 FDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDV 393

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
           E GR +H  L      S +S  N+LI+MY++C  V+ A  +F  + +   VSWNAMI   
Sbjct: 394 EQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGY 453

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
            Q+G    AI+ + +M  + I PD  T ++V+ A     ++ + +     +HG   I   
Sbjct: 454 AQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAK----WIHGLV-IRTC 508

Query: 555 EDH----YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
            D         +D+  + G    A+ + D +  +     W A++ G   HG   LG +AA
Sbjct: 509 LDKNVFVATALVDMYAKCGAVHTARKLFDMMDER-HVTTWNAMIDGYGTHG---LG-KAA 563

Query: 611 EQLFQLM 617
            +LF+ M
Sbjct: 564 LELFEKM 570



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 101/389 (25%), Positives = 175/389 (44%), Gaps = 74/389 (19%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           + RS+H + + +GF+   ++   L+D+Y K   +  AR +FD +    +V+  ++I    
Sbjct: 294 IGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMI---- 349

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                          Y  N +  AA+E+F+ M  + V+  N T 
Sbjct: 350 -----------------------------DGYVQNGDPGAAMEIFQKMMDEQVEMTNVTV 380

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
              L A A + + E Q   +H  + +   G   SV+N+LIS+Y KC           +  
Sbjct: 381 MGALHACADLGDVE-QGRFVHKLLDQLELGSDVSVMNSLISMYSKC---------KRVDI 430

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A  +F+ +  +  +SW  M+ GY +N  ++ A ++                        K
Sbjct: 431 AAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYF----------------------CK 468

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           M +  I+ D FT  SVI A A   +    K +H  ++RT      + ++ V  ALV +Y 
Sbjct: 469 MQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRT----CLDKNVFVATALVDMYA 524

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER----NLLSWTV 388
           KCG V+ AR +F+ M ER + +WNA++  Y + GL   A  LFE M++     N +++  
Sbjct: 525 KCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLC 584

Query: 389 MISGLAQNGYGEEGLKLFSQMRLE-GFKP 416
           ++S  + +G  EEG + F  M+ + G +P
Sbjct: 585 VLSACSHSGLVEEGFQYFGSMKKDYGLEP 613


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 242/621 (38%), Positives = 360/621 (57%), Gaps = 35/621 (5%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           ++HC ++K+G     S+ N LI++Y KC          L+  A  +F+++P RD +SW +
Sbjct: 24  KLHCHIIKTGIDQCKSLSNNLINMYGKC---------GLIQDALNLFNQLPHRDPISWAS 74

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++T   + +           M +  G                     +Q D + +  ++ 
Sbjct: 75  ILTANNQANLPHLTLSMFPAMFKQDG---------------------LQPDHYVFACLVK 113

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           ACA  G  + GKQVHA  +     P  +  + V ++LV +Y KCG  +  R +F+ +  +
Sbjct: 114 ACAILGAMKQGKQVHATFI---VSPVSDDDV-VKSSLVDMYAKCGLPDIGRVVFDSISSK 169

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           + +SW A++S Y  +G   +A  LF+ M  +NLLSWT +ISGL Q+G   +   LF +MR
Sbjct: 170 NSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMR 229

Query: 411 LEGFKPCD-YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
            +G    D +  +  I + A L  L  G+Q+H  ++  GY+SSL   NAL+ MYA+C  V
Sbjct: 230 SKGIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDV 289

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
            AA  +F  M   D VSW ++I    QHG    A+ LY +ML  G+ P+ +TF+ ++ AC
Sbjct: 290 LAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYAC 349

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
           +H GLV +GR +F +M   YGI P   HY   +DLL R+G   EA+++I ++PFKP    
Sbjct: 350 SHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEAT 409

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
           W ALL+ C  H N  +GI+ A+ L  L P    TY+LLSN+YA+   W+  ++VR+LM  
Sbjct: 410 WAALLSACNHHRNTLIGIRVADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAA 469

Query: 650 RGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHD 709
             VKKEPG S I +  +  VFL  +T+HP  + ++  LE+L  EM+K GY+PDT  VLHD
Sbjct: 470 MEVKKEPGYSCIVLGKESQVFLAGETSHPAKEEIFGLLEELDAEMKKRGYIPDTSSVLHD 529

Query: 710 MESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIV 769
           +E  +KE  L  HSE+LAVA+GL+K   G  + ++KNLR+CGDCH   KF+S +V REIV
Sbjct: 530 LEQQEKERQLFWHSERLAVAYGLLKGIPGMVLHIVKNLRVCGDCHTVLKFISIIVKREIV 589

Query: 770 VRDGKRFHHFRDGKCSCGDYW 790
           VRD  R+HHF+DGKCSC ++W
Sbjct: 590 VRDANRYHHFKDGKCSCNNFW 610



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 136/508 (26%), Positives = 230/508 (45%), Gaps = 97/508 (19%)

Query: 19  QLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ 78
           QLQ C      +  + + +H H+I +G    + + N LI++Y K   +  A  LF+++P 
Sbjct: 9   QLQACARHQ--SPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPH 66

Query: 79  PDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFR 138
                                            RD + + +++TA +  +  H  + +F 
Sbjct: 67  ---------------------------------RDPISWASILTANNQANLPHLTLSMFP 93

Query: 139 DM-RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
            M ++D ++PD++ F  ++ A A I+   KQ  Q+H T + S       V ++L+ +Y K
Sbjct: 94  AMFKQDGLQPDHYVFACLVKACA-ILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAK 152

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND-YLDAAREFLDGMSENVG 256
           C          L    R VFD +  ++ +SWT M++GY ++   LDA + F     +N+ 
Sbjct: 153 C---------GLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNL- 202

Query: 257 VAWNALISG-----------YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
           ++W ALISG           Y+  E++   + I +D F  +S+I A AN  +  LGKQ+H
Sbjct: 203 LSWTALISGLVQSGNWVDSFYLFMEMRSKGIDI-VDPFILSSIIGASANLAVLGLGKQIH 261

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365
             ++        E SL V+NALV +Y KC  V  A+ IF +M +RD+VSW +I+      
Sbjct: 262 CLVILLGY----ESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQH 317

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425
           GL +EA                               L L+++M   G KP +  F G I
Sbjct: 318 GLAEEA-------------------------------LSLYNRMLSTGLKPNEVTFVGLI 346

Query: 426 TSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVD 483
            +C+ +G +  GR     ++   G + SL     L+ + +R G +E A  +   MP   D
Sbjct: 347 YACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPD 406

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQML 511
             +W A+++A   H N    I + + +L
Sbjct: 407 EATWAALLSACNHHRNTLIGIRVADHLL 434



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 117/228 (51%), Gaps = 34/228 (14%)

Query: 289 ISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
           + ACA      +GK++H ++++T        S    N L+ +Y KCG + +A ++FNQ+P
Sbjct: 10  LQACARHQSPPIGKKLHCHIIKTGIDQCKSLS----NNLINMYGKCGLIQDALNLFNQLP 65

Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQ 408
            RD +SW +IL+A   A L     S+F AM                           F Q
Sbjct: 66  HRDPISWASILTANNQANLPHLTLSMFPAM---------------------------FKQ 98

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
              +G +P  Y FA  + +CA LGA++ G+Q+HA  + S         ++L+ MYA+CG+
Sbjct: 99  ---DGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGL 155

Query: 469 VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
            +    VF+++ + +S+SW AMI+   Q G    AI+L+++M  + +L
Sbjct: 156 PDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLL 203



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 115/234 (49%), Gaps = 16/234 (6%)

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           + +CA   +   G++LH  ++ +G D   S  N LI MY +CG+++ A  +FN +P+ D 
Sbjct: 10  LQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDP 69

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKE-GILPDRITFLTVLSACNHAGLVKEGRRYFE 543
           +SW +++ A  Q       + ++  M K+ G+ PD   F  ++ AC   G +K+G++   
Sbjct: 70  ISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQ--- 126

Query: 544 TMHGPYGIPPGEDH---YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
            +H  + + P  D     +  +D+  + G     + V DS+  K S   W A+++G    
Sbjct: 127 -VHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSIS-WTAMISGYAQS 184

Query: 601 G-NIDLGIQAAEQLFQLMP-HHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           G  +D     A QLFQ MP  +  ++  L +     G W D+  +   MR +G+
Sbjct: 185 GRKLD-----AIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGI 233


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 270/760 (35%), Positives = 398/760 (52%), Gaps = 101/760 (13%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
             R++HAH+  +    R+  +N+L                             +LI  Y 
Sbjct: 37  FGRTIHAHLTITNHNYRDSKVNQL----------------------------NSLINLYV 68

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMR-RDDVKPDNFT 151
             D V +AR++F+  P   R+ V ++A++  Y  N N     ELF+ M  +D++ P+ + 
Sbjct: 69  KCDEVSIARKLFDSMP--RRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYV 126

Query: 152 FTSVLSAL-ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
             + +S+  + +  E KQC   H   +KSG      V NALI +Y KC         S +
Sbjct: 127 IATAISSCDSQMYVEGKQC---HGYALKSGLEFHQYVKNALIQLYSKC---------SDV 174

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
           GAA ++   +P  D   +  ++ G +++ ++  A + L  +    G+ WN          
Sbjct: 175 GAAIQILYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVLKLIISE-GIEWN---------- 223

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
                        TY ++   CA+     LGKQVHA +L+++     +  + + ++++ +
Sbjct: 224 -----------NATYVTIFRLCASLKDITLGKQVHAQMLKSDI----DCDVYIGSSIIDM 268

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y KCG V   R                               + F+ ++ RN++SWT +I
Sbjct: 269 YGKCGNVLSGR-------------------------------TFFDRLQSRNVVSWTSII 297

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
           +   QN + EE L LFS+M ++   P +Y  A    S AGL AL  G QLHA+   SG  
Sbjct: 298 AAYFQNEFFEEALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQLHARAEKSGLK 357

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
            ++  GNALI MY + G + AA  VF+ M   + ++WNA+I     HG G  A+ +++ M
Sbjct: 358 GNVMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSHHGLGKEALSMFQDM 417

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
           +  G  P+ +TF+ V+ AC H  LV EG  YF  +   + I PG +HY   + LL R+G+
Sbjct: 418 MATGERPNYVTFIGVILACAHLKLVDEGFYYFNHLMKQFRIVPGLEHYTCIVGLLSRSGR 477

Query: 571 FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630
             EA++ + S         W  LL  C +H + D G + AE L QL P   GTY+LLSNM
Sbjct: 478 LDEAENFMRSHQINWDVVSWRTLLNACYVHKHYDKGRKIAEYLLQLEPRDVGTYILLSNM 537

Query: 631 YANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQL 690
           +A + RWD    +RKLMR+R VKKEPG SW+E+ N  HVF  +D  HPEA  +Y+ ++ L
Sbjct: 538 HARVRRWDHVVEIRKLMRERNVKKEPGVSWLEIRNVAHVFTSEDIKHPEANLIYENVKDL 597

Query: 691 VLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRIC 750
           + ++R LGYVPD   VLHD+E +QK   LS HSEKLAVA+GLMK P GA + V+KNLR+C
Sbjct: 598 LSKIRPLGYVPDIDNVLHDIEDEQKVDNLSYHSEKLAVAYGLMKTPSGAPITVIKNLRMC 657

Query: 751 GDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            DCH A K +SKV  R IVVRD  RFHHF++G CSCGDYW
Sbjct: 658 DDCHTAIKLISKVANRVIVVRDANRFHHFQNGCCSCGDYW 697



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 84/157 (53%), Gaps = 14/157 (8%)

Query: 434 LENGRQLHAQLV---HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
           L+ GR +HA L    H+  DS ++  N+LI +Y +C  V  A  +F++MP  + VSW+A+
Sbjct: 35  LKFGRTIHAHLTITNHNYRDSKVNQLNSLINLYVKCDEVSIARKLFDSMPRRNVVSWSAL 94

Query: 491 IAALGQHGNGARAIELYEQM-LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY 549
           +A   Q+GN     EL+++M +K+ I P+     T +S+C+ + +  EG++     HG Y
Sbjct: 95  MAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSCD-SQMYVEGKQ----CHG-Y 148

Query: 550 GIPPGED--HYAR--FIDLLCRAGKFSEAKDVIDSLP 582
            +  G +   Y +   I L  +      A  ++ ++P
Sbjct: 149 ALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVP 185



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 150/368 (40%), Gaps = 75/368 (20%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y +  +LC     IT  L + VHA M+ S      +I + +ID+Y K   ++  RT FD 
Sbjct: 227 YVTIFRLCASLKDIT--LGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDR 284

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +   ++V+ T++IAAY          E F +                          A+ 
Sbjct: 285 LQSRNVVSWTSIIAAY-------FQNEFFEE--------------------------ALN 311

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM--QMHCTVVKSGTGLFTSVLNALIS 193
           LF  M  D + P+ +T   + ++ A +      C+  Q+H    KSG      V NALI 
Sbjct: 312 LFSKMEIDCIPPNEYTMAVLFNSAAGL---SALCLGDQLHARAEKSGLKGNVMVGNALII 368

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
           +Y K        S  ++ AA+ VF  M   + ++W  ++TG+    +    +E L    +
Sbjct: 369 MYFK--------SGDIL-AAQSVFSNMTCCNIITWNAIITGH---SHHGLGKEALSMFQD 416

Query: 254 NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
                              M+    + +  T+  VI ACA+  L   G     +L++ + 
Sbjct: 417 -------------------MMATGERPNYVTFIGVILACAHLKLVDEGFYYFNHLMK-QF 456

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIF-NQMPERDLVSWNAILSAYVSAGLIDEAK 372
           +  P   L     +V L  + G+++EA +   +     D+VSW  +L+A       D+ +
Sbjct: 457 RIVP--GLEHYTCIVGLLSRSGRLDEAENFMRSHQINWDVVSWRTLLNACYVHKHYDKGR 514

Query: 373 SLFEAMRE 380
            + E + +
Sbjct: 515 KIAEYLLQ 522


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 262/714 (36%), Positives = 386/714 (54%), Gaps = 75/714 (10%)

Query: 80   DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
            DI+    L+  Y    ++K A E F  T  +  + V +N M+ AY    N + + ++F  
Sbjct: 406  DIILEGALLDLYVKCSDIKTAHEFFLST--ETENVVLWNVMLVAYGLLDNLNESFKIFTQ 463

Query: 140  MRRDDVKPDNFTFTSVL---SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
            M+ + ++P+ FT+ S+L   S+L  +   E    Q+H  V+K+G      V + LI +Y 
Sbjct: 464  MQMEGIEPNQFTYPSILRTCSSLRAVDLGE----QIHTQVLKTGFQFNVYVSSVLIDMYA 519

Query: 197  KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
            K            +  A ++F  + E+D +SWT M+ GY +++    A      M +   
Sbjct: 520  KL---------GKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQ-- 568

Query: 257  VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
                                 I  D   + S ISACA       G+Q+HA    +     
Sbjct: 569  --------------------GIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSD- 607

Query: 317  PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
                L V NALV+LY +CGKV +A   F+++  +D +SWN+++S +  +G  +EA     
Sbjct: 608  ---DLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEA----- 659

Query: 377  AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
                                      L LFSQM   G +   + F  A+++ A +  ++ 
Sbjct: 660  --------------------------LSLFSQMSKAGQEINSFTFGPAVSAAANVANVKL 693

Query: 437  GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
            G+Q+HA ++ +G+DS     N LIT+YA+CG ++ A   F  MP  + +SWNAM+    Q
Sbjct: 694  GKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQ 753

Query: 497  HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
            HG+G +A+ L+E M + G+LP+ +TF+ VLSAC+H GLV EG +YF++M   +G+ P  +
Sbjct: 754  HGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPE 813

Query: 557  HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
            HYA  +DLL R+G  S A+  ++ +P +P A +   LL+ C +H NID+G  AA  L +L
Sbjct: 814  HYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLEL 873

Query: 617  MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTA 676
             P  + TYVLLSNMYA  G+W    R R++M+DRGVKKEPG SWIEV+N VH F   D  
Sbjct: 874  EPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQK 933

Query: 677  HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLP 736
            HP    +Y+YL  L     + GY+P T  +L+D E  QK      HSEKLA+AFGL+ L 
Sbjct: 934  HPNVDKIYEYLRDLNELAAENGYIPQTNSLLNDAERRQKGPTQIIHSEKLAIAFGLLSLS 993

Query: 737  GGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
                + V KNLR+CGDCHN  K++SK+  R IVVRD  RFHHF+ G CSC DYW
Sbjct: 994  SSTPIHVFKNLRVCGDCHNWIKYVSKISDRVIVVRDSYRFHHFKGGICSCKDYW 1047



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 160/601 (26%), Positives = 267/601 (44%), Gaps = 109/601 (18%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           YA  L+ C   + +       +HA  I+ G++    + N LID+Y K+  L  A+ +FD 
Sbjct: 172 YAGVLRGCGGGD-VPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFD- 229

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
                                            L+ RD+V + AM++  S +     A+ 
Sbjct: 230 --------------------------------GLQKRDSVSWVAMLSGLSQSGCEEEAVL 257

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LF  M    V P  + F+SVLSA    VE  K   Q+H  V+K G  L T V NAL+++Y
Sbjct: 258 LFCQMHTSGVYPTPYIFSSVLSACTK-VEFYKVGEQLHGLVLKQGFSLETYVCNALVTLY 316

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            +     F+        A +VF+ M +RDE+S+ ++++G  +  Y D A E         
Sbjct: 317 SRL--GNFI-------PAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFK------ 361

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                           KM +  ++ D  T  S++SAC++ G   +GKQ H+Y ++     
Sbjct: 362 ----------------KMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSS 405

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
                + +  AL+ LY KC  +  A + F      ++V WN +L AY   GL+D      
Sbjct: 406 ----DIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAY---GLLD------ 452

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
                 NL                 E  K+F+QM++EG +P  + +   + +C+ L A++
Sbjct: 453 ------NL----------------NESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVD 490

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            G Q+H Q++ +G+  ++   + LI MYA+ G ++ A  +F  +   D VSW AMIA   
Sbjct: 491 LGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYA 550

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
           QH   A A+ L+++M  +GI  D I F + +SAC     + +G++    +H    +    
Sbjct: 551 QHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQ----IHAQACVSGYS 606

Query: 556 DHYA---RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
           D  +     + L  R GK  +A    D + F      W +L++G    G+ +  +    Q
Sbjct: 607 DDLSVGNALVSLYARCGKVRDAYFAFDKI-FSKDNISWNSLISGFAQSGHCEEALSLFSQ 665

Query: 613 L 613
           +
Sbjct: 666 M 666



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 142/576 (24%), Positives = 242/576 (42%), Gaps = 125/576 (21%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           +H  ++  GF     +  RL+D+Y     L  A T+FDE+P                   
Sbjct: 90  LHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMP------------------- 130

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
                         +R    +N ++  +         + LFR M ++ VKPD  T+  VL
Sbjct: 131 --------------VRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVL 176

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM-GAARR 215
                                  G G           V   CV    + +R++  G    
Sbjct: 177 RG--------------------CGGG----------DVPFHCVEK--IHARTITHGYENS 204

Query: 216 VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR--ELKM 273
           +F   P         ++  Y KN +L++A++  DG+ +   V+W A++SG      E + 
Sbjct: 205 LFVCNP---------LIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEA 255

Query: 274 LMLRIQLDE-------FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP--VN 324
           ++L  Q+         + ++SV+SAC     +++G+Q+H  +L+        FSL   V 
Sbjct: 256 VLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQG------FSLETYVC 309

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
           NALVTLY + G         N +P                      A+ +F AM +R+ +
Sbjct: 310 NALVTLYSRLG---------NFIP----------------------AEQVFNAMLQRDEV 338

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
           S+  +ISGL+Q GY ++ L+LF +M L+  KP     A  +++C+ +GAL  G+Q H+  
Sbjct: 339 SYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYA 398

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
           + +G  S +    AL+ +Y +C  ++ A+  F +    + V WN M+ A G   N   + 
Sbjct: 399 IKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESF 458

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
           +++ QM  EGI P++ T+ ++L  C+    V  G +   T     G        +  ID+
Sbjct: 459 KIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQ-IHTQVLKTGFQFNVYVSSVLIDM 517

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
             + GK   A  +   L  K     W A++AG   H
Sbjct: 518 YAKLGKLDHALKIFRRLKEKDVVS-WTAMIAGYAQH 552



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 144/338 (42%), Gaps = 48/338 (14%)

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
           TY  ++  C +SG F  G ++H  +L+          + +   L+ LY   G ++ A  +
Sbjct: 70  TYLWLLDGCLSSGWFSDGWKLHGKILKMGFCA----EVVLCERLMDLYIAFGDLDGAVTV 125

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
           F++MP R L  WN +L  +V+  +                                   L
Sbjct: 126 FDEMPVRPLSCWNKVLHRFVAGKMAGRV-------------------------------L 154

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGA-LENGRQLHAQLVHSGYDSSLSAGNALITM 462
            LF +M  E  KP +  +AG +  C G         ++HA+ +  GY++SL   N LI +
Sbjct: 155 GLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDL 214

Query: 463 YARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF 522
           Y + G + +A  VF+ +   DSVSW AM++ L Q G    A+ L+ QM   G+ P    F
Sbjct: 215 YFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIF 274

Query: 523 LTVLSACNHAGLVKEGRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579
            +VLSAC      K G    E +HG     G           + L  R G F  A+ V +
Sbjct: 275 SSVLSACTKVEFYKVG----EQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFN 330

Query: 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           ++  +     + +L++G    G  D     A +LF+ M
Sbjct: 331 AMLQRDEVS-YNSLISGLSQQGYSD----KALELFKKM 363



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 84/217 (38%), Gaps = 2/217 (0%)

Query: 381 RNLLSWTVMISGLAQNGYGE-EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
           +  L     +S    N  GE  G+     M   G +     +   +  C   G   +G +
Sbjct: 30  QKFLEHNTALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWK 89

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           LH +++  G+ + +     L+ +Y   G ++ A  VF+ MP      WN ++        
Sbjct: 90  LHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKM 149

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA 559
             R + L+ +ML+E + PD  T+  VL  C    +              +G         
Sbjct: 150 AGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCN 209

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
             IDL  + G  + AK V D L  + S   W A+L+G
Sbjct: 210 PLIDLYFKNGFLNSAKKVFDGLQKRDSVS-WVAMLSG 245


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 261/712 (36%), Positives = 382/712 (53%), Gaps = 70/712 (9%)

Query: 80   DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
            DI+  T L+  Y+     + A+++F    L+ RD V ++A+I A         A+ LF++
Sbjct: 363  DILVATPLMVMYAKCGETEKAKQLF--WGLQGRDLVAWSAIIAALVQTGYPEEALSLFQE 420

Query: 140  MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
            M+   +KP+  T  S+L A A +    K    +HC  VK+      S   AL+S+Y KC 
Sbjct: 421  MQNQKMKPNRVTLMSILPACADL-SLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKC- 478

Query: 200  SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                        AA   F+ M  RD ++W +++ GY +                 +G  +
Sbjct: 479  --------GFFTAALTTFNRMSSRDIVTWNSLINGYAQ-----------------IGDPY 513

Query: 260  NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
            NA+   Y     K+ +  I  D  T   V+ ACA       G  +H  ++    K   E 
Sbjct: 514  NAIDMFY-----KLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIV----KLGFES 564

Query: 320  SLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
               V NAL+ +Y KCG +  A  +FN+    +D V+WN                      
Sbjct: 565  DCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWN---------------------- 602

Query: 379  RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
                     V+I+   QNG+ +E +  F QMRLE F P    F   + + A L A   G 
Sbjct: 603  ---------VIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGM 653

Query: 439  QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
              HA ++  G+ S+   GN+LI MYA+CG ++ +  +FN M + D+VSWNAM++    HG
Sbjct: 654  AFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHG 713

Query: 499  NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
            +G RAI L+  M +  +  D ++F++VLSAC HAGLV+EGR+ F +M   Y I P  +HY
Sbjct: 714  HGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHY 773

Query: 559  ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
            A  +DLL RAG F E    I  +P +P A +W ALL  CR+H N+ LG  A + L +L P
Sbjct: 774  ACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEP 833

Query: 619  HHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHP 678
             +   +V+LS++YA  GRW DA + R  M D G+KK PGCSW+E+ NKVH F V D +HP
Sbjct: 834  RNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHP 893

Query: 679  EAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGG 738
            + ++++     L+ +M K+GYVPD   VL ++E + KE  L +HSE+LA+ F L+  P G
Sbjct: 894  QLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPG 953

Query: 739  ATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            +T++++KNLR+C DCH   KF+SK+  R I+VRD  RFHHF DG CSC DYW
Sbjct: 954  STIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 144/589 (24%), Positives = 245/589 (41%), Gaps = 100/589 (16%)

Query: 41  MISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP----QPDIVARTTLIAAYSASDN 96
           M+  G +P ++    ++     +L L        EI     + D+     L+  YS   +
Sbjct: 120 MVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGD 179

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
           +K ARE+F+K P   RD V +NAMI   S + +   A++ FR M+   V+P + +  ++ 
Sbjct: 180 LKRAREVFDKMP--KRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLF 237

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
             +  +   E  C  +H  V +      ++V N LI +Y KC                  
Sbjct: 238 PGICKLSNIE-LCRSIHGYVFRRD--FSSAVSNGLIDLYSKCGD---------------- 278

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR------- 269
                                   +D AR   D M +   V+W  +++GY H        
Sbjct: 279 ------------------------VDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVL 314

Query: 270 EL--KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327
           EL  KM +  +++++ +  S   A A +     GK++H   L+         + P    L
Sbjct: 315 ELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATP----L 370

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWT 387
           + +Y KCG+                                ++AK LF  ++ R+L++W+
Sbjct: 371 MVMYAKCGET-------------------------------EKAKQLFWGLQGRDLVAWS 399

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447
            +I+ L Q GY EE L LF +M+ +  KP        + +CA L  L+ G+ +H   V +
Sbjct: 400 AIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKA 459

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
             DS LS G AL++MYA+CG   AA   FN M + D V+WN++I    Q G+   AI+++
Sbjct: 460 DMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMF 519

Query: 508 EQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG---PYGIPPGEDHYARFIDL 564
            ++    I PD  T + V+ AC     + +G      +HG     G           ID+
Sbjct: 520 YKLRLSAINPDAGTMVGVVPACALLNDLDQG----TCIHGLIVKLGFESDCHVKNALIDM 575

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
             + G    A+ + +   F      W  ++A    +G+    I +  Q+
Sbjct: 576 YAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQM 624



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 138/526 (26%), Positives = 229/526 (43%), Gaps = 112/526 (21%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y   L  C   NP+       +HA +I SGFK   H I  LI++Y          +LF +
Sbjct: 35  YPRLLSSCKHLNPLLQ-----IHAQIIVSGFK-HHHSITHLINLY----------SLFHK 78

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
                                  LAR +F+ TP   R  + +N+MI AY+ +   + A+E
Sbjct: 79  ---------------------CDLARSVFDSTPNPSR--ILWNSMIRAYTRSKQYNEALE 115

Query: 136 LFRDMRRDDVKPDNFTFTSVLSAL--ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
           ++  M    ++PD +TFT VL A   AL ++E    +  H  + + G      +   L+ 
Sbjct: 116 MYYCMVEKGLEPDKYTFTFVLKACTGALNLQEG---VWFHGEIDRRGLERDVFIGAGLVD 172

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
           +Y         S    +  AR VFD+MP+RD ++W  M+ G  +++    A +F   M  
Sbjct: 173 MY---------SKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQ- 222

Query: 254 NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
                                ++ ++    +  ++           L + +H Y+ R   
Sbjct: 223 ---------------------LVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRR-- 259

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
               +FS  V+N L+ LY KCG V+ AR +F+QM ++D VSW  +++ Y           
Sbjct: 260 ----DFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGY----------- 304

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
                               A NG   E L+LF +M+L   +    +   A  + A    
Sbjct: 305 --------------------AHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETID 344

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
           LE G+++H   +    DS +     L+ MYA+CG  E A  +F  +   D V+W+A+IAA
Sbjct: 345 LEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAA 404

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
           L Q G    A+ L+++M  + + P+R+T +++L AC    L+K G+
Sbjct: 405 LVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGK 450



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 175/415 (42%), Gaps = 57/415 (13%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + D   +  LI  Y+   ++  A  +FNKT    +D V +N +I AY  N +   AI  F
Sbjct: 563 ESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFT-KDEVTWNVIIAAYMQNGHAKEAISSF 621

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
             MR ++  P++ TF SVL A A +    ++ M  H  +++ G    T V N+LI +Y K
Sbjct: 622 HQMRLENFHPNSVTFVSVLPAAAYLA-AFREGMAFHACIIQMGFLSNTLVGNSLIDMYAK 680

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C           +  + ++F+EM  +D +SW  M++GY  + + D A      M E+   
Sbjct: 681 C---------GQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQES--- 728

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV-HAYLLRTEAKPT 316
                              ++Q+D  ++ SV+SAC ++GL   G+++ H+   +   KP 
Sbjct: 729 -------------------QVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPD 769

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA---YVSAGLIDEAK 372
            E        +V L  + G  +E       MP E D   W A+L +   + +  L + A 
Sbjct: 770 LEHY----ACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVAL 825

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
                +  RN   + V+ S  AQ+G   +  K  S+M   G K              G  
Sbjct: 826 DHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLK-----------KTPGCS 874

Query: 433 ALENGRQLHAQLV----HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
            +E   ++HA  V    H   +S     N L+    + G V   +CV   +   D
Sbjct: 875 WVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEED 929



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 104/232 (44%), Gaps = 12/232 (5%)

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
           D A+S+F++    + + W  MI    ++    E L+++  M  +G +P  Y F   + +C
Sbjct: 80  DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKAC 139

Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
            G   L+ G   H ++   G +  +  G  L+ MY++ G ++ A  VF+ MP  D V+WN
Sbjct: 140 TGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWN 199

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP 548
           AMIA L Q  +   A++ +  M   G+ P  ++ L +       G+ K      E     
Sbjct: 200 AMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLF-----PGICKLSN--IELCRSI 252

Query: 549 YGIPPGEDHYAR----FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           +G     D  +      IDL  + G    A+ V D +  +     W  ++AG
Sbjct: 253 HGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVS-WGTMMAG 303



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 6/172 (3%)

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           ++SC  L  L    Q+HAQ++ SG+    S  + LI +Y+     + A  VF++ PN   
Sbjct: 39  LSSCKHLNPL---LQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPSR 94

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
           + WN+MI A  +      A+E+Y  M+++G+ PD+ TF  VL AC  A  ++EG  +F  
Sbjct: 95  ILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEG-VWFHG 153

Query: 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
                G+       A  +D+  + G    A++V D +P K     W A++AG
Sbjct: 154 EIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP-KRDVVAWNAMIAG 204



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 35/135 (25%)

Query: 36  SVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASD 95
           + HA +I  GF     + N LID+Y K  +L Y+  LF+E+   D               
Sbjct: 654 AFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKD--------------- 698

Query: 96  NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV 155
                             TV +NAM++ Y+ + +G  AI LF  M+   V+ D+ +F SV
Sbjct: 699 ------------------TVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSV 740

Query: 156 LSAL--ALIVEEEKQ 168
           LSA   A +VEE ++
Sbjct: 741 LSACRHAGLVEEGRK 755


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 276/803 (34%), Positives = 409/803 (50%), Gaps = 101/803 (12%)

Query: 11  TLANRYASQLQLCD--PRNPITSSLAR--------SVHAHMISSGFKPREHIINRLIDIY 60
           +LA R  S++  CD    N + S  A+         +   M  SG+ P    I  L+   
Sbjct: 195 SLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAAC 254

Query: 61  CKSLKLVYARTLFDEIPQ----PDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVF 116
                L   + L   + +    PD +   +L+  Y     +  A E+F        + V 
Sbjct: 255 ASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSG--DRTNVVL 312

Query: 117 YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTV 176
           +N M+ AY   S+   + +LF  M    V+P+ FT+                C+   CT 
Sbjct: 313 WNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYP---------------CLLRTCT- 356

Query: 177 VKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV 236
                  +   +N    +++  + + F S   + G                   ++  Y 
Sbjct: 357 -------YAGEINLGEQIHLLSIKTGFESDMYVSG------------------VLIDMYS 391

Query: 237 KNDYLDAAREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTS 287
           K  +LD AR  L+ +     V+W ++I+GYV  E           M +  I  D     S
Sbjct: 392 KYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLAS 451

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
            ISACA     R G+Q+H+                                    ++   
Sbjct: 452 AISACAGIKAMRQGQQIHS-----------------------------------RVYVSG 476

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
              D+  WNA+++ Y   G   EA SLFEA+  ++ ++W  M+SG AQ+G  EE L++F 
Sbjct: 477 YSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFI 536

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467
           +M   G K   + F  +I++ A L  ++ G+Q+HA ++ +G  S     NALI++Y +CG
Sbjct: 537 KMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCG 596

Query: 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
            +E A   F  M   + VSWN +I +  QHG G  A++L++QM +EG+ P+ +TF+ VL+
Sbjct: 597 SIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLA 656

Query: 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSA 587
           AC+H GLV+EG  YF++M   +GI P  DHYA  +D+L RAG+   A+  ++ +P   +A
Sbjct: 657 ACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANA 716

Query: 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647
            +W  LL+ CR+H NI++G  AA+ L +L PH + +YVLLSN YA  G+W     VRK+M
Sbjct: 717 MVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMM 776

Query: 648 RDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVL 707
           +DRGV+KEPG SWIEV N VH F V D  HP A  +YKYL  L   + K+GY+    F+ 
Sbjct: 777 KDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADLDDRLAKIGYIQGNYFLF 836

Query: 708 HDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGRE 767
           H+ E +QK+     HSEKLAVAFGLM LP    +RV+KNLR+C DCH   KF S+V+GRE
Sbjct: 837 HEKEKEQKDPTAFVHSEKLAVAFGLMSLPPSMPLRVIKNLRVCNDCHTWMKFTSEVMGRE 896

Query: 768 IVVRDGKRFHHFRDGKCSCGDYW 790
           IV+RD  RFHHF +G CSCGD+W
Sbjct: 897 IVLRDVYRFHHFNNGNCSCGDFW 919



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 150/577 (25%), Positives = 260/577 (45%), Gaps = 72/577 (12%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D +A   LI  Y+    V+ AR +F +  L  RD V + AM++ Y+ N  G  A+ L+  
Sbjct: 76  DRIAGNLLIDLYAKKGLVQRARRVFEQ--LSARDNVSWVAMLSGYARNGLGEEAVGLYHQ 133

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M    V P  +  +SVLSA       E Q   +H  V K G+   T V NALI++Y++  
Sbjct: 134 MHCSGVVPTPYVLSSVLSACTKAALFE-QGRLVHAQVYKQGSCSETVVGNALIALYLRFG 192

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
           S         +  A RVF EMP  D +++ T+++ + +    ++A E  + M        
Sbjct: 193 S---------LSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMR------- 236

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
              +SG+              D  T  S+++ACA+ G    GKQ+H+YLL+  A  +P++
Sbjct: 237 ---LSGWTP------------DCVTIASLLAACASIGDLNKGKQLHSYLLK--AGMSPDY 279

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
              +  +L+ LY KCG + EA +IF      ++V WN +L AY                 
Sbjct: 280 --IIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQ--------------- 322

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
                     IS LA++        LF QM   G +P ++ +   + +C   G +  G Q
Sbjct: 323 ----------ISDLAKS------FDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQ 366

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           +H   + +G++S +     LI MY++ G ++ A  +   +   D VSW +MIA   QH  
Sbjct: 367 IHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEF 426

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA 559
              A+E ++ M   GI PD I   + +SAC     +++G++    ++   G       + 
Sbjct: 427 CKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVS-GYSADVSIWN 485

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL-MP 618
             ++L  R G+  EA  + +++  K     W  +++G    G  +  ++   +++Q  + 
Sbjct: 486 ALVNLYARCGRSKEAFSLFEAIEHKDKIT-WNGMVSGFAQSGLYEEALEVFIKMYQAGVK 544

Query: 619 HHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKE 655
           ++  T+V   +  ANL       ++   +   G   E
Sbjct: 545 YNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSE 581



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 125/458 (27%), Positives = 207/458 (45%), Gaps = 80/458 (17%)

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H   +  G G      N LI +Y K         + L+  ARRVF+++  RD +SW  M
Sbjct: 64  IHAKAITCGLGEDRIAGNLLIDLYAK---------KGLVQRARRVFEQLSARDNVSWVAM 114

Query: 232 MTGYVKNDYLDAAREFLDGMSEN-VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++GY +N           G+ E  VG+      SG V               +  +SV+S
Sbjct: 115 LSGYARN-----------GLGEEAVGLYHQMHCSGVVP------------TPYVLSSVLS 151

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           AC  + LF  G+ VHA + +  +         V NAL+ LY + G ++ A  +F++MP  
Sbjct: 152 ACTKAALFEQGRLVHAQVYKQGSCSET----VVGNALIALYLRFGSLSLAERVFSEMPYC 207

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           D V++N ++S +                               AQ G GE  L++F +MR
Sbjct: 208 DRVTFNTLISRH-------------------------------AQCGNGESALEIFEEMR 236

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
           L G+ P     A  + +CA +G L  G+QLH+ L+ +G         +L+ +Y +CGV+ 
Sbjct: 237 LSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIV 296

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
            A  +F +    + V WN M+ A GQ  + A++ +L+ QM+  G+ P+  T+  +L  C 
Sbjct: 297 EALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCT 356

Query: 531 HAGLVKEGRRYFETMHGPYGIPPG--EDHYAR--FIDLLCRAGKFSEAKDVIDSLPFKPS 586
           +AG +  G    E +H    I  G   D Y     ID+  + G   +A+ +++ L  K  
Sbjct: 357 YAGEINLG----EQIH-LLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDV 411

Query: 587 APIWEALLAGCRIHGNIDLGIQAAE--QLFQLMPHHAG 622
              W +++AG   H      ++  +  QLF + P + G
Sbjct: 412 VS-WTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIG 448



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 165/361 (45%), Gaps = 45/361 (12%)

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           +W    V  A+ I   + E D ++ N ++  Y   GL+  A+ +FE +  R+ +SW  M+
Sbjct: 57  HWPLVPVIHAKAITCGLGE-DRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAML 115

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
           SG A+NG GEE + L+ QM   G  P  Y  +  +++C      E GR +HAQ+   G  
Sbjct: 116 SGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSC 175

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
           S    GNALI +Y R G +  A  VF+ MP  D V++N +I+   Q GNG  A+E++E+M
Sbjct: 176 SETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEM 235

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
              G  PD +T  ++L+AC   G + +G++    +    G+ P        +DL  + G 
Sbjct: 236 RLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKA-GMSPDYIIEGSLLDLYVKCGV 294

Query: 571 FSEAKDVIDS----------------------------------LPFKPSAPIWEALLAG 596
             EA ++  S                                     +P+   +  LL  
Sbjct: 295 IVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRT 354

Query: 597 CRIHGNIDLGIQAAEQLFQL---MPHHAGTYV--LLSNMYANLGRWDDAARVRKLMRDRG 651
           C   G I+LG    EQ+  L       +  YV  +L +MY+  G  D A R+ +++  + 
Sbjct: 355 CTYAGEINLG----EQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKD 410

Query: 652 V 652
           V
Sbjct: 411 V 411


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 258/688 (37%), Positives = 400/688 (58%), Gaps = 82/688 (11%)

Query: 112  RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA----LIVEEEK 167
            +D+V +N+MIT    N     A++ F++MRR ++ P NFT  S LS+ A    + V E  
Sbjct: 453  KDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGE-- 510

Query: 168  QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS 227
               Q+HC  +K G  L  SV NAL+++Y +C           +   ++ F  M + D +S
Sbjct: 511  ---QLHCEGLKLGLDLDVSVSNALLALYGEC---------GYVKECQKAFSLMLDYDHVS 558

Query: 228  WTTMMTGYVKND--YLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTY 285
            W +++     ++   L+A   FL  M       W+                    +  T+
Sbjct: 559  WNSLIGALADSEPSMLEAVESFLVMMR----AGWDP-------------------NRVTF 595

Query: 286  TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFN 345
             ++++A ++  L  LGKQ+HA +L+            + NAL+  Y KCG +    +IF+
Sbjct: 596  ITILAAVSSLSLHELGKQIHALVLKRNVAADT----AIENALLACYGKCGDMGYCENIFS 651

Query: 346  QMPER-DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
            +M +R D VSWN+++S Y+   L+ +A  +           W +M  G            
Sbjct: 652  RMSDRQDEVSWNSMISGYIHNELLPKAMDMV----------WFMMQKG------------ 689

Query: 405  LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
                 RL+GF      FA  +++CA +  LE G ++H   V +  +S +  G+AL+ MYA
Sbjct: 690  ----QRLDGF-----TFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSALVDMYA 740

Query: 465  RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
            +CG ++ A+  F  MP  +  SWN+MI+   +HG+G ++++L+ QM  +G LPD +TF+ 
Sbjct: 741  KCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVG 800

Query: 525  VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584
            VLSAC+HAGLV EG  +F++M   YG+ P  +H++  +DLL R G+ ++ +D ++ +P K
Sbjct: 801  VLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQMPVK 860

Query: 585  PSAPIWEALL-AGCRIHG-NIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAAR 642
            P+  IW  +L A CR +G N  LG +AAE L ++ P +A  Y+LLSNMYA+ G+WDD A+
Sbjct: 861  PNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYASGGKWDDVAK 920

Query: 643  VRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPD 702
             R  MR   VKKE GCSW+ + + VHVF+  D +HPE   +Y+ L++L  +MR  GY+P+
Sbjct: 921  TRVAMRKAFVKKEAGCSWVTMKDGVHVFVAGDKSHPEKDLIYEKLKELNGKMRLAGYIPE 980

Query: 703  TKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSK 762
            T+F L+D+E + KE  LS HSEK+AVAF L + P    +R+LKNLR+CGDCH+AFK++S+
Sbjct: 981  TRFALYDLEGESKEELLSYHSEKIAVAFVLTR-PSKMPIRILKNLRVCGDCHSAFKYISQ 1039

Query: 763  VVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            +V R+IV+RD  RFHHF +GKCSCGD+W
Sbjct: 1040 IVERQIVLRDSNRFHHFENGKCSCGDFW 1067



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 136/513 (26%), Positives = 231/513 (45%), Gaps = 77/513 (15%)

Query: 41  MISSGFKPREHIINRLIDI--YCKSLKLVYARTLFDEIPQP----DIVARTTLIAAY-SA 93
           M+S GF P  +    +I     C    L +   +   + +     D+ A   LI+ Y +A
Sbjct: 165 MVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNA 224

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR----DDVKPDN 149
              V  AR  F+   +  R+ V  N+MI+ Y    +  +A ++F  M++    D +KP+ 
Sbjct: 225 LGMVDYARRAFDS--IWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNE 282

Query: 150 FTFTSVLSALALIVEEEKQCM-QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
           +TF S++SA   +       + Q+   V KSG      V +AL+S + K  S        
Sbjct: 283 YTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGS-------- 334

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
            +G A+ +F +M  R+ +S   ++ G V+    + A E    M ++V +  N+ +     
Sbjct: 335 -IGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNSYM----- 388

Query: 269 RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALV 328
                    I L  F    V+         R G +VHA+L+R+         + + N L+
Sbjct: 389 ---------IILTAFPEFHVLENGK-----RKGSEVHAFLIRSGLLNA---QIAIGNGLI 431

Query: 329 TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV 388
            +Y KCG                                I++A  +F  M  ++ ++W  
Sbjct: 432 NMYAKCGA-------------------------------INDACVVFRLMDNKDSVTWNS 460

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG 448
           MI+GL QN    E +K F +MR     P ++    A++SCA LG +  G QLH + +  G
Sbjct: 461 MITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLG 520

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG-QHGNGARAIELY 507
            D  +S  NAL+ +Y  CG V+     F+ M + D VSWN++I AL     +   A+E +
Sbjct: 521 LDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESF 580

Query: 508 EQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
             M++ G  P+R+TF+T+L+A +   L + G++
Sbjct: 581 LVMMRAGWDPNRVTFITILAAVSSLSLHELGKQ 613



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 146/548 (26%), Positives = 239/548 (43%), Gaps = 116/548 (21%)

Query: 3   MKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCK 62
           +++ + I +LA RY         R    S  A  +H  +  +GF     + N LI+IY +
Sbjct: 70  VQHDEKIESLAQRY---------RYSCGSKDAEELHLQLFKNGFVNDLFLCNTLINIYAR 120

Query: 63  SLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
              L   R +FDE+P  ++V+ + LI+ Y+            N+ P              
Sbjct: 121 VGDLGSGRKVFDEMPLRNLVSWSCLISGYTR-----------NRMP-------------- 155

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEE-KQCMQMHCTVVKSGT 181
                   + A ELFR M  D   P+++ F SV+ A     E   K  MQ+H  + K+  
Sbjct: 156 --------NEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQY 207

Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
               +  N LIS+Y   +         ++  ARR FD +  R+ +S  +M++ Y +    
Sbjct: 208 VNDVTASNVLISMYGNAL--------GMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDA 259

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISAC---ANSGLF 298
            +A +    M + V                  +   ++ +E+T+ S+ISA    ANSGL 
Sbjct: 260 VSAFDIFSTMQKEV------------------MGDGLKPNEYTFGSLISATCSLANSGLV 301

Query: 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAI 358
            L +     LL    K      L V +ALV+ + K G +  A++IF +M  R++VS N  
Sbjct: 302 LLEQ-----LLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNG- 355

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPC 417
                                         +I GL +   GEE ++LF +M+      P 
Sbjct: 356 ------------------------------LIIGLVRQKRGEEAVELFMEMKDSVELNPN 385

Query: 418 DYAFAGAITSCAGLGALENGR----QLHAQLVHSG-YDSSLSAGNALITMYARCGVVEAA 472
            Y     +T+      LENG+    ++HA L+ SG  ++ ++ GN LI MYA+CG +  A
Sbjct: 386 SYMI--ILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDA 443

Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
             VF  M N DSV+WN+MI  L Q+     A++ +++M +  + P   T ++ LS+C   
Sbjct: 444 CVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASL 503

Query: 533 GLVKEGRR 540
           G +  G +
Sbjct: 504 GWISVGEQ 511



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 174/388 (44%), Gaps = 74/388 (19%)

Query: 167 KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDEL 226
           K   ++H  + K+G      + N LI++Y +            +G+ R+VFDEMP R+ +
Sbjct: 90  KDAEELHLQLFKNGFVNDLFLCNTLINIYARVGD---------LGSGRKVFDEMPLRNLV 140

Query: 227 SWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYT 286
           SW+ +++GY +N   + A E                         KM+      + + + 
Sbjct: 141 SWSCLISGYTRNRMPNEACELFR----------------------KMVSDGFMPNHYAFG 178

Query: 287 SVISACANSGLF--RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC-GKVNEARDI 343
           SVI AC   G +  + G Q+H  + +T+        +  +N L+++Y    G V+ AR  
Sbjct: 179 SVIRACQECGEYGLKFGMQIHGLMSKTQYVN----DVTASNVLISMYGNALGMVDYARRA 234

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
           F+ +  R+LVS N+++S Y   G    A  +F  M++                       
Sbjct: 235 FDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQK----------------------- 271

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSC-----AGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
               ++  +G KP +Y F   I++      +GL  LE   QL  ++  SG+   L  G+A
Sbjct: 272 ----EVMGDGLKPNEYTFGSLISATCSLANSGLVLLE---QLLTRVEKSGFLHDLYVGSA 324

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           L++ +A+ G +  A  +F  M   + VS N +I  L +   G  A+EL+ +M K+ +  +
Sbjct: 325 LVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEM-KDSVELN 383

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMH 546
             +++ +L+A     +++ G+R    +H
Sbjct: 384 PNSYMIILTAFPEFHVLENGKRKGSEVH 411



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 139/298 (46%), Gaps = 46/298 (15%)

Query: 283 FTYTSVISACANSGLFRLGKQV------HAY--LLRTEAKPTPEFSLPVNNALVTLY--- 331
           F +T  ++A ++S +F   +        H Y  L      P P  S+P+   LV LY   
Sbjct: 5   FFHTRRLAAYSHSSVFTFPRSASSIPHSHHYPLLFNPFTNPLPPSSIPLQ-VLVDLYKSS 63

Query: 332 ---------------------WKCGKVNEAR---DIFNQMPERDLVSWNAILSAYVSAGL 367
                                + CG  +       +F      DL   N +++ Y   G 
Sbjct: 64  QLHHNPVQHDEKIESLAQRYRYSCGSKDAEELHLQLFKNGFVNDLFLCNTLINIYARVGD 123

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
           +   + +F+ M  RNL+SW+ +ISG  +N    E  +LF +M  +GF P  YAF   I +
Sbjct: 124 LGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRA 183

Query: 428 CAGLG--ALENGRQLHAQLVHSGYDSSLSAGNALITMYARC-GVVEAANCVFNTMPNVDS 484
           C   G   L+ G Q+H  +  + Y + ++A N LI+MY    G+V+ A   F+++   + 
Sbjct: 184 CQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNL 243

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKE----GILPDRITFLTVLSA-CN--HAGLV 535
           VS N+MI+   Q G+   A +++  M KE    G+ P+  TF +++SA C+  ++GLV
Sbjct: 244 VSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLISATCSLANSGLV 301



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 63/113 (55%), Gaps = 2/113 (1%)

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
           ++  +LH QL  +G+ + L   N LI +YAR G + +   VF+ MP  + VSW+ +I+  
Sbjct: 90  KDAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGY 149

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
            ++     A EL+ +M+ +G +P+   F +V+ AC   G  + G ++   +HG
Sbjct: 150 TRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECG--EYGLKFGMQIHG 200


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 270/740 (36%), Positives = 417/740 (56%), Gaps = 53/740 (7%)

Query: 62  KSLKLVYARTL-FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAM 120
           K LK ++A+ L  +++  P   +     AA+S+   +  AR++F++ P    +   +N +
Sbjct: 153 KQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIP--QPNLYSWNIL 210

Query: 121 ITAYSHNSNGHAAIELFRDMRRDD-VKPDNFTFTSVLSALALIVEEEKQCM----QMHCT 175
           I A + +S+   ++ +F  M  D    P+ FTF  ++ A+A     E++C      +H  
Sbjct: 211 IRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVA-----ERRCFLVGKAVHGM 265

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFD--EMPERDELSWTTMMT 233
            +K+  G    VLN+LI  Y  C           +  A  VF+  E   +D +SW +M+T
Sbjct: 266 AIKTSFGDDVFVLNSLIHFYASC---------GHLDLAYLVFEMIEGNNKDIVSWNSMVT 316

Query: 234 GYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACA 293
           G+V+  Y D A +  + M  N GV  NA+                     T  SV+SACA
Sbjct: 317 GFVQGGYPDKALDLFERM-RNEGVHPNAV---------------------TMVSVMSACA 354

Query: 294 NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV 353
            +    LG++V  Y+ R E       +L V NA + ++ KCG+V  AR +F+ M +RD+V
Sbjct: 355 KTMNLTLGRKVCDYIDRNEMM----MNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVV 410

Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL-- 411
           SW  I+  Y        A+ +F++M  +++ +W V+ISG  Q+G  +E L +F +++L  
Sbjct: 411 SWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTK 470

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
            G +P        +++CA LGA++ G  +H  +       + +   +LI MY++ G VE 
Sbjct: 471 SGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEK 530

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
           A  VF+++ N D   W+AMIA L  HG G  AIEL+  M +  + P+ +TF  +L AC+H
Sbjct: 531 AIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSH 590

Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
           +GLV EG+R F+ M   YG+ P   HY+  +D+L RAG   EA   I+ +P  PSA +W 
Sbjct: 591 SGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWG 650

Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
           ALL  C IHGN++L  +A  +L ++ P + G YVLLSN+YA  G W+  + +R+ MRD G
Sbjct: 651 ALLGACCIHGNLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSG 710

Query: 652 VKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDME 711
           +KKE GCS IE+D  VH F+V D AHP ++ +Y  L++++  +R  GYV +T  +L  +E
Sbjct: 711 LKKETGCSSIEIDGTVHEFIVGDNAHPLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVE 770

Query: 712 SDQ-KEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVV 770
            ++ KE AL  HSEK+A+AFGL++      +R++KNLR+C DCH   K +SKV GR+IV+
Sbjct: 771 EEEMKEKALKLHSEKMAIAFGLIRADSQQAIRIVKNLRVCRDCHTVAKMVSKVYGRDIVL 830

Query: 771 RDGKRFHHFRDGKCSCGDYW 790
           RD  RFHHF  G CSC DYW
Sbjct: 831 RDRYRFHHFSGGHCSCQDYW 850



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 139/323 (43%), Gaps = 40/323 (12%)

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV------SWNAILSAYVSAG 366
           + PTP  +   N     L+ +C    + + I  QM   + +      S     +A+ S  
Sbjct: 128 SSPTPASATATNVGDRALFQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFS 187

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG-FKPCDYAFAGAI 425
            +D A+ +F+ + + NL SW ++I  LA +    + + +F +M  +  F P  + F   I
Sbjct: 188 ALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLI 247

Query: 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP--NVD 483
            + A       G+ +H   + + +   +   N+LI  YA CG ++ A  VF  +   N D
Sbjct: 248 KAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKD 307

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY-- 541
            VSWN+M+    Q G   +A++L+E+M  EG+ P+ +T ++V+SAC     +  GR+   
Sbjct: 308 IVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCD 367

Query: 542 --------------------------FETMHGPYGIPPGED--HYARFIDLLCRAGKFSE 573
                                      E   G +      D   +   ID   +  +   
Sbjct: 368 YIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGI 427

Query: 574 AKDVIDSLPFKPSAPIWEALLAG 596
           A+D+ DS+P K   P W  L++G
Sbjct: 428 ARDIFDSMPRK-DIPAWNVLISG 449



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 162/373 (43%), Gaps = 47/373 (12%)

Query: 51  HIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLK 110
           ++ N  ID++ K  ++  AR LFD + + D+V+ TT+I  Y+      +AR++F+  P K
Sbjct: 379 NVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRK 438

Query: 111 MRDTVFYNAMITAYSHNSNGHAAIELFRDMR--RDDVKPDNFTFTSVLSALALIVEEEKQ 168
             D   +N +I+ Y  +     A+ +FR+++  +   +PD  T  S LSA A +   +  
Sbjct: 439 --DIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIG 496

Query: 169 CMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSW 228
              +H  + K    L  ++  +LI +Y         S    +  A  VF  +  +D   W
Sbjct: 497 -EWIHGYIKKERIQLNRNLATSLIDMY---------SKSGDVEKAIEVFHSIGNKDVFVW 546

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSV 288
           + M+ G   +   +AA E    M E                       +++ +  T+T++
Sbjct: 547 SAMIAGLAMHGRGEAAIELFLDMQET----------------------QVKPNSVTFTNL 584

Query: 289 ISACANSGLFRLGKQVHAYLLRTEA--KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
           + AC++SGL   GK++   + R       T  +S      +V +  + G + EA      
Sbjct: 585 LCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYS-----CMVDVLGRAGHLEEALKFIEG 639

Query: 347 MPERDLVS-WNAILSAYVSAG---LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG 402
           MP     S W A+L A    G   L ++A S    +   N  ++ ++ +  A+ G  E  
Sbjct: 640 MPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGV 699

Query: 403 LKLFSQMRLEGFK 415
            +L  QMR  G K
Sbjct: 700 SELRQQMRDSGLK 712


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 280/750 (37%), Positives = 415/750 (55%), Gaps = 64/750 (8%)

Query: 53  INRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMR 112
           IN    I+   +K     T+F       + ++     A S S ++  A  +F +     +
Sbjct: 41  INTFKQIHSLIIKTGLNNTVF-------VQSKLIHFCAVSPSGDLSYALSLFEENQQHHK 93

Query: 113 DTVF-YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ 171
             VF +N++I  YS +S+  +++ LF  M    V+P++ TF  +  +     +   +  Q
Sbjct: 94  HNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTK-AKATHEGKQ 152

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H   +K        V  ++I +Y         +S   M  AR VFD+   RD +S+T +
Sbjct: 153 LHAHALKLALHFNPHVHTSVIHMY---------ASVGEMDFARLVFDKSSLRDAVSFTAL 203

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE---------LKMLMLRIQLDE 282
           +TGYV    LD AR   D +     V+WNA+ISGYV             +M    +  ++
Sbjct: 204 ITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNK 263

Query: 283 FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARD 342
            T   V+SAC ++    LGK + +++ R     +   +L + NAL+ +Y KCG+      
Sbjct: 264 STMVVVLSACGHTRSGELGKWIGSWV-RDNGFGS---NLQLTNALIDMYCKCGET----- 314

Query: 343 IFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG 402
                                     D A+ LF+ + E++++SW  MI G +     EE 
Sbjct: 315 --------------------------DIARELFDGIEEKDVISWNTMIGGYSYLSLYEEA 348

Query: 403 LKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS-LSAGNALIT 461
           L LF  M     KP D  F G + +CA LGAL+ G+ +HA +  +  +SS  S   +LI 
Sbjct: 349 LALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLID 408

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL-PDRI 520
           MYA+CG +EAA  VF +M + +  SWNAM++    HG+  RA+ L+ +M+ +G+  PD I
Sbjct: 409 MYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDI 468

Query: 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580
           TF+ VLSAC  AGLV  G +YF +M   YGI P   HY   IDLL RA KF EA+ ++ +
Sbjct: 469 TFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKN 528

Query: 581 LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA 640
           +  +P   IW +LL+ C+ HG ++ G   AE+LFQL P +AG +VLLSN+YA  GRWDD 
Sbjct: 529 MEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDV 588

Query: 641 ARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYV 700
           AR+R  + D+G+KK PGC+ IE+D  VH FLV D  HPE   +YK L ++   + + G+V
Sbjct: 589 ARIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFV 648

Query: 701 PDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFM 760
           P+T  VL+DM+ + KE ALS HSEKLA++FGL+K   G T+R++KNLR+CG+CH+A K +
Sbjct: 649 PNTSEVLYDMDEEWKEGALSQHSEKLAISFGLIKTKPGTTIRIVKNLRVCGNCHSATKLI 708

Query: 761 SKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           SK+  REI+ RD  RFHHF+DG CSC D W
Sbjct: 709 SKIFNREIIARDRNRFHHFKDGFCSCNDCW 738



 Score =  164 bits (414), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 131/471 (27%), Positives = 204/471 (43%), Gaps = 77/471 (16%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +HAH +        H+   +I +Y    ++ +AR +FD+    D V+ T LI  Y +
Sbjct: 150 GKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVS 209

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
              +  AR +F++ P+K  D V +NAMI+ Y  +     AI  F +M+  +V P+  T  
Sbjct: 210 QGCLDDARRLFDEIPVK--DVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMV 267

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
            VLSA       E     +   V  +G G    + NALI +Y KC  +           A
Sbjct: 268 VVLSACGHTRSGELG-KWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDI---------A 317

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           R +FD + E+D +SW TM+ GY    YL    E L            AL          M
Sbjct: 318 RELFDGIEEKDVISWNTMIGGY---SYLSLYEEAL------------ALFE-------VM 355

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL---LRTEAKPTPEFSLPVNNALVTL 330
           L   ++ ++ T+  ++ ACA  G   LGK VHAY+   LR  +  +      +  +L+ +
Sbjct: 356 LRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNAS------LWTSLIDM 409

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y KCG +  A  +F  M  R+L SWNA+LS +                            
Sbjct: 410 YAKCGCIEAAERVFRSMHSRNLASWNAMLSGF---------------------------- 441

Query: 391 SGLAQNGYGEEGLKLFSQMRLEG-FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-G 448
              A +G+ E  L LFS+M  +G F+P D  F G +++C   G ++ G Q    ++   G
Sbjct: 442 ---AMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYG 498

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHG 498
               L     +I + AR    E A  +   M    D   W ++++A   HG
Sbjct: 499 ISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHG 549



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 145/346 (41%), Gaps = 77/346 (22%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           +  L + + + +  +GF     + N LID+YCK  +   AR LFD I + D+++      
Sbjct: 278 SGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVIS------ 331

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
                                      +N MI  YS+ S    A+ LF  M R +VKP++
Sbjct: 332 ---------------------------WNTMIGGYSYLSLYEEALALFEVMLRSNVKPND 364

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVK-----SGTGLFTSVLNALISVYVKCVSSPFV 204
            TF  +L A A +   +     +H  + K     S   L+TS    LI +Y KC      
Sbjct: 365 VTFLGILHACACLGALDLG-KWVHAYIDKNLRNSSNASLWTS----LIDMYAKC------ 413

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                + AA RVF  M  R+  SW  M++G+  + + + A                AL S
Sbjct: 414 ---GCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERAL---------------ALFS 455

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
             V++ L       + D+ T+  V+SAC  +GL  LG Q    +++ +   +P+  L   
Sbjct: 456 EMVNKGL------FRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQ-DYGISPK--LQHY 506

Query: 325 NALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLID 369
             ++ L  +  K  EA  +   M  E D   W ++LSA  + G ++
Sbjct: 507 GCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVE 552



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 96/412 (23%), Positives = 161/412 (39%), Gaps = 77/412 (18%)

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV------SAGLIDE 370
           P + +   +  + L  KC  +N  + I + + +  L +   + S  +       +G +  
Sbjct: 21  PPYKILEQHPYLNLLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSY 80

Query: 371 AKSLFEAMRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
           A SLFE  ++    N+  W  +I G + +      L LFS+M   G +P  + F     S
Sbjct: 81  ALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKS 140

Query: 428 CAGLGALENGRQLHAQL----------VHSG-----------------YDSS----LSAG 456
           C    A   G+QLHA            VH+                  +D S      + 
Sbjct: 141 CTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSF 200

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
            ALIT Y   G ++ A  +F+ +P  D VSWNAMI+   Q G    AI  + +M +  +L
Sbjct: 201 TALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVL 260

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
           P++ T + VLSAC H    + G ++  +     G           ID+ C+ G+   A++
Sbjct: 261 PNKSTMVVVLSACGHTRSGELG-KWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARE 319

Query: 577 VIDSLP----------------------------------FKPSAPIWEALLAGCRIHGN 602
           + D +                                    KP+   +  +L  C   G 
Sbjct: 320 LFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGA 379

Query: 603 IDLGIQAAEQLFQLMPH--HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           +DLG      + + + +  +A  +  L +MYA  G  + A RV + M  R +
Sbjct: 380 LDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNL 431


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/534 (43%), Positives = 350/534 (65%), Gaps = 7/534 (1%)

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
           AW+  IS Y + +L +L      DE+T+TSV+ ACA       G++VH ++     K   
Sbjct: 105 AWHTTIS-YFNNQL-VLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFV----TKYGC 158

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
           E +L V N+LV LY+K G    A+ +F++M  RD+VSWN ++S Y  +G++D+A+ +F+ 
Sbjct: 159 ESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDG 218

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG-FKPCDYAFAGAITSCAGLGALEN 436
           M E+NL+SW+ MISG A+N    + ++LF QM+ EG   P D      +++CA LGAL+ 
Sbjct: 219 MMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDL 278

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           G+ +H  +  +  +  L  GNAL  MYA+CG V  A  VF+ M   D +SW+ +I  L  
Sbjct: 279 GKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAM 338

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
           +G    A   + +M+++G+ P+ I+F+ +L+AC HAGLV +G  YF+ M   YGI P  +
Sbjct: 339 YGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIE 398

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           HY   +DLL RAG+  +A+ +I+S+P +P+  +W ALL GCRI+ + + G +   ++ +L
Sbjct: 399 HYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILEL 458

Query: 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTA 676
             +H+G+ V L+N+YA++GR DDAA  R  MRD    K PGCSWIE++N V+ F + D++
Sbjct: 459 DSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSS 518

Query: 677 HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLP 736
           HP++  +Y  + +L  +M+  GY P T  V+H+++ ++KE ALSTHSEKLA+AFGL+   
Sbjct: 519 HPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTS 578

Query: 737 GGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            G T+R++KNLR+C DCH+A K +SK+V REIVVRD  RFHHF+DGKCSC DYW
Sbjct: 579 EGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCSCNDYW 632



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 134/470 (28%), Positives = 224/470 (47%), Gaps = 69/470 (14%)

Query: 62  KSLKLVYARTLFDEIPQ--PDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNA 119
           + L  + A+ +   IP   P+I+A    I   S+  N++ +  +FN   L   +   YNA
Sbjct: 38  RQLFEIQAQIIASPIPSIDPNIIA-VKFIGVSSSHGNLRHSVLIFNHF-LSFPNIFAYNA 95

Query: 120 MITAYSHNSNGHAAIELFRD--MRRDDVKPDNFTFTSVLSA---LALIVEEEKQCMQMHC 174
           ++ A+S ++  H  I  F +  +  +   PD +TFTSVL A   LA ++E +K    +HC
Sbjct: 96  LLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQK----VHC 151

Query: 175 TVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTG 234
            V K G      V N+L+ +Y K   +           A+++FDEM  RD +SW T+++G
Sbjct: 152 FVTKYGCESNLFVRNSLVDLYFKVGCNCI---------AQKLFDEMVVRDVVSWNTLISG 202

Query: 235 YVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE--LKMLMLRIQL--------DEFT 284
           Y  +  +D AR   DGM E   V+W+ +ISGY   E     + L  Q+        ++ T
Sbjct: 203 YCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVT 262

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
             SV+SACA+ G   LGK +H ++ R +     E  L + NAL  +Y KCG V EA+ +F
Sbjct: 263 LVSVLSACAHLGALDLGKWIHRFIRRNKI----EVGLFLGNALADMYAKCGCVLEAKGVF 318

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           ++M ERD++SW+ I                               I GLA  GY  E   
Sbjct: 319 HEMHERDVISWSII-------------------------------IMGLAMYGYANEAFN 347

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMY 463
            F++M  +G +P D +F G +T+C   G ++ G +    +    G    +     ++ + 
Sbjct: 348 FFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLL 407

Query: 464 ARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           +R G ++ A  + N+MP   + + W A++     + +  R   +  ++L+
Sbjct: 408 SRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILE 457



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 153/331 (46%), Gaps = 41/331 (12%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + VH  +   G +    + N L+D+Y K      A+ LFDE+   D+V+  TLI+ Y  
Sbjct: 146 GQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCF 205

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPDNFTF 152
           S  V  AR +F+   +  ++ V ++ MI+ Y+ N     AIELFR M+ +  + P++ T 
Sbjct: 206 SGMVDKARMVFDG--MMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTL 263

Query: 153 TSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
            SVLSA A L   +  + +       K   GLF    NAL  +Y KC           + 
Sbjct: 264 VSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLG--NALADMYAKC---------GCVL 312

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A+ VF EM ERD +SW+ ++ G     Y + A  F   M E+                 
Sbjct: 313 EAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIED----------------- 355

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                 ++ ++ ++  +++AC ++GL   G +    + +     TP+  +     +V L 
Sbjct: 356 -----GLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYG-ITPK--IEHYGCVVDLL 407

Query: 332 WKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
            + G++++A  + N MP + +++ W A+L  
Sbjct: 408 SRAGRLDQAESLINSMPMQPNVIVWGALLGG 438


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 244/616 (39%), Positives = 357/616 (57%), Gaps = 40/616 (6%)

Query: 181 TGLFTSVLNALISVYVKCVSS------PFVSSRSLMGAARRVFDEMPERDELSWTTMMTG 234
           +G   S L    S+ VK   +       + + R  +  AR++FD +PE D  S+  M+  
Sbjct: 18  SGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRIPEPDIFSYNIMLAC 77

Query: 235 YVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACAN 294
           Y+ N  +++AR F D M      +WN +ISG+    +        +D+     ++    N
Sbjct: 78  YLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGM--------MDQARELFLVMPVRN 129

Query: 295 SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS 354
           S  +                          NA+++ Y + G ++ A+ +F   P R +V+
Sbjct: 130 SVSW--------------------------NAMISGYVESGDLDLAKQLFEVAPVRSVVA 163

Query: 355 WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF 414
           W A+++ ++  G I+ A+  FE M  +NL++W  MI+G  +N   E GLKLF +M   GF
Sbjct: 164 WTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGF 223

Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
           +P   + +  +  C+ L AL+ G+Q+H  +  S    +++AG +L++MY +CG +E A  
Sbjct: 224 RPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWK 283

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
           +F  MP  D V+WNAMI+   QHG G +A+ L+++M  EG+ PD ITF+ VLSACNHAG 
Sbjct: 284 LFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGF 343

Query: 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
           V  G  YF +M   YG+    DHY   +DLL R GK  EA D+I  +PFKP + I+  LL
Sbjct: 344 VDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLL 403

Query: 595 AGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKK 654
             CRIH N++L   AA+ L  L P  A  YV L+N+YA + RWD  A VR+ M+D  V K
Sbjct: 404 GACRIHKNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIK 463

Query: 655 EPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQ 714
            PG SWIEV + VH F   D  HPE   +++ L +L  +MR  GYVPD ++ LHD+  +Q
Sbjct: 464 TPGYSWIEVKSVVHEFRSGDRIHPELAFIHEKLNELERKMRLAGYVPDLEYALHDVGEEQ 523

Query: 715 KEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGK 774
           K+  L  HSEKLA+A+GL+++P G  +RV KNLR+CGDCH+A K++S + GR I+VRD  
Sbjct: 524 KKQILLRHSEKLAIAYGLIRMPLGTPIRVFKNLRVCGDCHSATKYISAIEGRVIIVRDTT 583

Query: 775 RFHHFRDGKCSCGDYW 790
           RFHHFR G+CSCGDYW
Sbjct: 584 RFHHFRQGECSCGDYW 599



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 175/401 (43%), Gaps = 100/401 (24%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS-ASDNVKLAREMFNKTPLKMR 112
           NR+I  + +S  L  A  +F+ +     V   +++A YS     +K+AR++F++ P    
Sbjct: 9   NRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRIPEP-- 66

Query: 113 DTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQM 172
           D   YN M+  Y HN++  +A   F  M   D                            
Sbjct: 67  DIFSYNIMLACYLHNADVESARLFFDQMPVKD---------------------------- 98

Query: 173 HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMM 232
                       T+  N +IS +         S   +M  AR +F  MP R+ +SW  M+
Sbjct: 99  ------------TASWNTMISGF---------SQNGMMDQARELFLVMPVRNSVSWNAMI 137

Query: 233 TGYVKNDYLDAARE-------------------------------FLDGMSENVGVAWNA 261
           +GYV++  LD A++                               + + M     V WNA
Sbjct: 138 SGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNA 197

Query: 262 LISGYV-----HRELKMLMLRIQL----DEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
           +I+GY+        LK+    ++     +  + +SV+  C+N    +LGKQVH  + ++ 
Sbjct: 198 MIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSP 257

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
                 +++    +L+++Y KCG + +A  +F  MP++D+V+WNA++S Y   G  ++A 
Sbjct: 258 V----SWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKAL 313

Query: 373 SLFEAMRERNL----LSWTVMISGLAQNGYGEEGLKLFSQM 409
            LF+ MR+  +    +++  ++S     G+ + G++ F+ M
Sbjct: 314 YLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSM 354



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 134/298 (44%), Gaps = 43/298 (14%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
           N +I  Y +S  L  A+ LF+  P   +VA T +I  +     ++LA + F + P  M++
Sbjct: 134 NAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMP--MKN 191

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMH 173
            V +NAMI  Y  N      ++LF+ M     +P+  + +SVL   + +    K   Q+H
Sbjct: 192 LVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNL-SALKLGKQVH 250

Query: 174 CTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMT 233
             + KS      +   +L+S+Y KC           +  A ++F  MP++D ++W  M++
Sbjct: 251 QLICKSPVSWNITAGTSLLSMYCKCGD---------LEDAWKLFLVMPQKDVVTWNAMIS 301

Query: 234 GYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACA 293
           GY ++   + A    D M +                        ++ D  T+ +V+SAC 
Sbjct: 302 GYAQHGAGEKALYLFDKMRDE----------------------GMKPDWITFVAVLSACN 339

Query: 294 NSGLFRLGKQVHAYLLR---TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
           ++G   LG +    ++R    EAKP           +V L  + GK+ EA D+  +MP
Sbjct: 340 HAGFVDLGIEYFNSMVRDYGVEAKPDHY------TCVVDLLGRGGKLVEAVDLIKKMP 391



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 84/170 (49%), Gaps = 17/170 (10%)

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
           S++ + N +IT + R G + +A  VF +M    +V+WN+M+A    + N    I++  Q+
Sbjct: 3   SNVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAG---YSNRRGKIKVARQL 59

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED--HYARFIDLLCRA 568
                 PD  ++  +L+   H   V+  R +F+ M       P +D   +   I    + 
Sbjct: 60  FDRIPEPDIFSYNIMLACYLHNADVESARLFFDQM-------PVKDTASWNTMISGFSQN 112

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
           G   +A+++   +P + S   W A+++G    G++DL    A+QLF++ P
Sbjct: 113 GMMDQARELFLVMPVRNSVS-WNAMISGYVESGDLDL----AKQLFEVAP 157


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 277/745 (37%), Positives = 408/745 (54%), Gaps = 76/745 (10%)

Query: 53  INRLIDIYCKSLKLVYARTLFDEIPQPDIVAR----TTLIAAYSASDNVKLAREMFNKTP 108
           +N L++   ++  L +A  +  +I   +  +       LI  Y+    +  A  +F+ T 
Sbjct: 145 LNHLLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITH 204

Query: 109 LKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA---LIVEE 165
              +  V + ++IT  SH +    A+ LF  MR     P+ FTF+S+LSA A   +++  
Sbjct: 205 HHFKTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHG 264

Query: 166 EKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDE 225
           +    Q+H  + K G      V  AL+ +Y KC           M +A RVFD+MPER+ 
Sbjct: 265 Q----QLHSLIHKHGFDANIFVGTALVDMYAKCAD---------MHSAVRVFDQMPERNL 311

Query: 226 LSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTY 285
           +SW +M+ G+  N+  D A          VGV  + L      RE  ++      +E + 
Sbjct: 312 VSWNSMIVGFFHNNLYDRA----------VGVFKDVL------REKTVIP-----NEVSV 350

Query: 286 TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFN 345
           +SV+SACAN G    G+QVH  +++    P       V N+L+ +Y+KC           
Sbjct: 351 SSVLSACANMGGLNFGRQVHGVVVKYGLVPLTY----VMNSLMDMYFKCR---------- 396

Query: 346 QMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKL 405
                                  DE   LF+ + +R++++W V++ G  QN   EE    
Sbjct: 397 ---------------------FFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNY 435

Query: 406 FSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465
           F  MR EG  P + +F+  + S A L AL  G  +H Q++  GY  ++    +LITMYA+
Sbjct: 436 FWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAK 495

Query: 466 CGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTV 525
           CG +  A  VF  + + + +SW AMI+A   HG   + IEL+E ML EGI P  +TF+ V
Sbjct: 496 CGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCV 555

Query: 526 LSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP 585
           LSAC+H G V+EG  +F +M   + + PG +HYA  +DLL RAG   EAK  I+S+P KP
Sbjct: 556 LSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKP 615

Query: 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645
           +  +W ALL  CR +GN+ +G +AAE+LF++ P++ G YVLL+NM    GR ++A  VR+
Sbjct: 616 TPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRR 675

Query: 646 LMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKF 705
           LM   GV+KEPGCSWI+V N   VF   D +H  +  +YK LE+L   ++K GYV +T+F
Sbjct: 676 LMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLEKLVKKKGYVAETEF 735

Query: 706 VLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVG 765
           V + +E +++E  L  HSEKLA+AFGL+ LP  + +R+ KNLR CG CH   K  SK+  
Sbjct: 736 VTNHLEENEEEQGLWYHSEKLALAFGLLTLPIDSPIRIKKNLRTCGHCHTVMKLASKIFD 795

Query: 766 REIVVRDGKRFHHFRDGKCSCGDYW 790
           REI+VRD  RFH F DG CSCGDYW
Sbjct: 796 REIIVRDINRFHRFADGFCSCGDYW 820


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 278/816 (34%), Positives = 434/816 (53%), Gaps = 90/816 (11%)

Query: 54   NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
            N LID+Y KS ++  A+  FDE+ + ++++ T+LI+ Y+      +A   +    ++ R+
Sbjct: 279  NALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAHARYVFDEMRHRN 338

Query: 114  TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMH 173
               ++ M++ Y        A+ LF  M    V+P+ F   S+++A +       +  Q+H
Sbjct: 339  EASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVH 398

Query: 174  CTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMT 233
              VVK+G          L  VYV      F  S  L+  A+++F+EMP+ + +SWT++M 
Sbjct: 399  GFVVKTGI---------LGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMV 449

Query: 234  GY--------VKNDYLDAAREFLD--------------------------------GMSE 253
            GY        V N Y    +E +                                 G  +
Sbjct: 450  GYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFED 509

Query: 254  NVGVAWNALISGY-----VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
            +V VA N+LIS +     V     +     + D  ++ ++ISA A+ GL R   +   ++
Sbjct: 510  SVSVA-NSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWM 568

Query: 309  --LRTEAKPTP-----------------------------EFSLPVNNALVTLYWKCGKV 337
              L  E   T                              + ++ + N L+TLY + G+ 
Sbjct: 569  RHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRS 628

Query: 338  NEARDIFNQMPERDLVSWNAILSAYVSAG-LIDEAKSLFE--AMRERNLLSWTVMISGLA 394
             +A  +F  M ERDL+SWN++++ YV  G  +D  K L E   M + + ++W  +I G A
Sbjct: 629  EDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKPDRVTWNALIGGHA 688

Query: 395  QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
            +N    E +K +  +R +G  P +Y    ++ + A L  LE G+QLH  ++  G++S L 
Sbjct: 689  ENEEPNEAVKAYKLIREKGI-PANYITMVSLAATANLAVLEEGQQLHGLVIKLGFESDLH 747

Query: 455  AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
              NA + MY +CG +     +     N   +SWN +I+A  +HG   +A E + +MLK G
Sbjct: 748  VTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLG 807

Query: 515  ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
              PD +TF+++LSACNH GLV EG  Y+++M   +G+ PG +H    IDLL R+G+ S A
Sbjct: 808  PKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHA 867

Query: 575  KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL 634
            +  I  +P  P+   W +LLA CRIHGN++L  + AE L +L P     YVL SN+ A  
Sbjct: 868  EGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATS 927

Query: 635  GRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEM 694
            G+W+D   +RK M    +KK+P CSW+++ +KVH F + +  HP+A  +   L +L+   
Sbjct: 928  GKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMT 987

Query: 695  RKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCH 754
            ++ GYVPDT F LHDM+ +QKEY L  HSE+LA+AFGL+  P  +T+R+ KNLR+CGDCH
Sbjct: 988  KEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCH 1047

Query: 755  NAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            + +KF+S +VGR+IV+RD  RFHHF  GKCSCGDYW
Sbjct: 1048 SVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1083



 Score =  196 bits (497), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 180/723 (24%), Positives = 304/723 (42%), Gaps = 133/723 (18%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y   LQLC  +          +H H+I++GF    H+  +LI  Y K   ++ AR +FD 
Sbjct: 33  YLKILQLCIDKK--AKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDG 90

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKT---------------------------- 107
           +P+  +V+ T +++ YS +   + A  +F+                              
Sbjct: 91  MPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANHALVDFHSKCGKMEDASYLF 150

Query: 108 -PLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA----LI 162
             +  RD V +NAMI  Y+       +  +FR M R  + PD +T  SVL A A    LI
Sbjct: 151 GTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLI 210

Query: 163 VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK-------------CVSSPFVSSRSL 209
           +       Q+H  + + G G +  V   LI+ Y K              +     SS +L
Sbjct: 211 IAN-----QIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTAL 265

Query: 210 MGA-------------------------ARRVFDEMPERDELSWTTMMTGYVKNDY--LD 242
           +                           A+R FDEM E++ +SWT++++GY K+ Y  + 
Sbjct: 266 ITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMA 325

Query: 243 AAREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACA 293
            AR   D M      +W+ ++SGYV   L         +M  L ++ + F   S+I+AC+
Sbjct: 326 HARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACS 385

Query: 294 NSG-LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL 352
            SG +   G QVH ++++T         + V  ALV  Y   G V  A+ +F +MP+ ++
Sbjct: 386 RSGYMADEGFQVHGFVVKTGILG----DVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNV 441

Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
           VSW +++  Y  +G   E                                L ++ +MR E
Sbjct: 442 VSWTSLMVGYSDSGNPGEV-------------------------------LNVYQRMRQE 470

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
           G       FA   +SC  L     G Q+   ++  G++ S+S  N+LI+M++    VE A
Sbjct: 471 GVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEA 530

Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
             VF+ M   D +SWNAMI+A   HG    ++  +  M       +  T  ++LS C+  
Sbjct: 531 CYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSV 590

Query: 533 GLVKEGRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
             +K GR     +HG     G+          + L   AG+  +A+ V  ++  +     
Sbjct: 591 DNLKWGR----GIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLIS- 645

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
           W +++A     G    G++   +L Q+      T+  L   +A     ++A +  KL+R+
Sbjct: 646 WNSMMACYVQDGKCLDGLKILAELLQMGKPDRVTWNALIGGHAENEEPNEAVKAYKLIRE 705

Query: 650 RGV 652
           +G+
Sbjct: 706 KGI 708



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 129/471 (27%), Positives = 205/471 (43%), Gaps = 97/471 (20%)

Query: 147 PDNFTFTSVLSALALIVEEE--KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           P     +  L  L L ++++  KQ   +H  ++ +G G    +   LI  YVK       
Sbjct: 25  PTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGD---- 80

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAA-------------------- 244
                + AAR VFD MPER  +SWT M++GY +N   + A                    
Sbjct: 81  -----VIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANHALVD 135

Query: 245 ----------REFLDG-MSENVGVAWNALISGYVHREL---KMLMLRIQL------DEFT 284
                       +L G M E   V+WNA+I GY  +        M R  L      D +T
Sbjct: 136 FHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYT 195

Query: 285 YTSVISACANSGLFRLGKQVHAYL------------------------------LRTEAK 314
             SV+ A A  G   +  Q+H  +                              LR    
Sbjct: 196 LGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGML 255

Query: 315 PTPEFS-------------LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
               FS               + NAL+ +Y K G++ +A+  F++M E++++SW +++S 
Sbjct: 256 KKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISG 315

Query: 362 YVSAGL--IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY 419
           Y   G   +  A+ +F+ MR RN  SW+ M+SG  + G  EE + LF QM   G +P  +
Sbjct: 316 YAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGF 375

Query: 420 AFAGAITSCAGLGAL-ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478
             A  IT+C+  G + + G Q+H  +V +G    +  G AL+  Y   G+V  A  +F  
Sbjct: 376 MVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEE 435

Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           MP+ + VSW +++      GN    + +Y++M +EG+  ++ TF TV S+C
Sbjct: 436 MPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC 486



 Score = 85.9 bits (211), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 151/356 (42%), Gaps = 52/356 (14%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R +H  ++  G      I N L+ +Y ++ +   A  +F  + + D+++  +++A Y  
Sbjct: 596 GRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQ 655

Query: 94  S----DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
                D +K+  E+     +   D V +NA+I  ++ N   + A++ ++ +R   +  + 
Sbjct: 656 DGKCLDGLKILAELLQ---MGKPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANY 712

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
            T  S+ +   L V EE Q  Q+H  V+K G      V NA + +Y KC           
Sbjct: 713 ITMVSLAATANLAVLEEGQ--QLHGLVIKLGFESDLHVTNAAMDMYGKC----------- 759

Query: 210 MGAARRVFDEMPE---RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
            G    V   +P+   R  LSW  +++ + ++     ARE                    
Sbjct: 760 -GEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFH----------------- 801

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                +ML L  + D  T+ S++SAC + GL   G   +  + R E    P     V   
Sbjct: 802 -----EMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTR-EFGVFPGIEHCV--C 853

Query: 327 LVTLYWKCGKVNEARDIFNQM--PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           ++ L  + G+++ A     +M  P  DL +W ++L+A    G ++ A+   E + E
Sbjct: 854 IIDLLGRSGRLSHAEGFIKEMPVPPNDL-AWRSLLAACRIHGNLELARKTAEHLLE 908


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 278/814 (34%), Positives = 414/814 (50%), Gaps = 123/814 (15%)

Query: 44   SGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREM 103
            +GF    + +N  +     S  L  AR +FD++P  +I +   +++AYS+S ++  A+ +
Sbjct: 251  TGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHL 310

Query: 104  FNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIV 163
            F  +P   R+   +  M+ A++       A+ LFR M  + V PD  T T+VL+     V
Sbjct: 311  FLSSP--HRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTV 368

Query: 164  EEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER 223
                    +H   +K G      V N L+  Y K           L+ AARRVF EM ++
Sbjct: 369  PS------LHPFAIKFGLDTHVFVCNTLLDAYCK---------HGLLAAARRVFLEMHDK 413

Query: 224  DELSWTTMMTG---------------------------------------------YVKN 238
            D +++  MM G                                             +V N
Sbjct: 414  DAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHPLHLLQYSHSRSRSTSVLNVFVNN 473

Query: 239  ---------DYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRI---------QL 280
                     D LD  R   D M E   V++N +I+ Y   +    +LR+           
Sbjct: 474  SLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDR 533

Query: 281  DEFTYTSVISACANSGLFRLGKQVHAYL----LRTEAKPTPEFSLPVNNALVTLYWKCGK 336
                Y +++S   +     +GKQ+HA L    L +E          + NAL+ +Y KCG 
Sbjct: 534  QVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDL--------LGNALIDMYSKCGM 585

Query: 337  VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
            ++ A+  F+   E+  +SW A+++ YV  G  +EA                         
Sbjct: 586  LDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEA------------------------- 620

Query: 397  GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
                  L+LFS MR  G +P    F+  I + + L  +  GRQLH+ L+ SGY SS+ +G
Sbjct: 621  ------LQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSG 674

Query: 457  NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
            + L+ MYA+CG ++ A   F+ MP  +S+SWNA+I+A   +G    AI+++E ML  G  
Sbjct: 675  SVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFN 734

Query: 517  PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
            PD +TFL+VL+AC+H GL  E  +YF  M   Y I P ++HYA  ID L R G FS+ + 
Sbjct: 735  PDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQK 794

Query: 577  VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636
            ++  +PFK    IW ++L  CRIHGN +L   AA++LF + P  A  YV+LSN+YA  G+
Sbjct: 795  MLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQ 854

Query: 637  WDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRK 696
            W+DAA V+K+MRDRGV+KE G SW+E+  K++ F  +D   P    +   L++L  EM K
Sbjct: 855  WEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDK 914

Query: 697  LGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNA 756
             GY PD    LH ++ + K  +L  HSE+LA+AF LM  P G  +R++KNL  C DCH  
Sbjct: 915  QGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAV 974

Query: 757  FKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             K +SK+V R+I+VRD +RFHHF+DG CSCGDYW
Sbjct: 975  IKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 1008



 Score = 48.9 bits (115), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 17/168 (10%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R +H+++I SG+K      + L+D+Y K   L  A   FDE+P+ + ++   +I+AY+
Sbjct: 654 LGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYA 713

Query: 93  ASDNVKLAREMFNK------TPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DV 145
                K A +MF         P    D+V + +++ A SHN      ++ F  M+    +
Sbjct: 714 HYGEAKNAIKMFEGMLHCGFNP----DSVTFLSVLAACSHNGLADECMKYFHLMKHQYSI 769

Query: 146 KPDNFTFTSVLSALALI---VEEEKQCMQMHCTVVKSGTGLFTSVLNA 190
            P    +  V+  L  +    + +K  ++M     K+   ++TS+L++
Sbjct: 770 SPWKEHYACVIDTLGRVGCFSQVQKMLVEM---PFKADPIIWTSILHS 814


>gi|296089060|emb|CBI38763.3| unnamed protein product [Vitis vinifera]
          Length = 719

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 269/764 (35%), Positives = 406/764 (53%), Gaps = 146/764 (19%)

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           AR LFD +P  D  +  T+I AY+ S  +  AR++F +TP+  R  + ++++I+ Y    
Sbjct: 60  ARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPI--RSCITWSSLISGYCRYG 117

Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL 188
               A+ELF +M+ +  +P+ FT+ SVL   ++ V  EK   Q+H   +K+       V+
Sbjct: 118 CDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKG-KQIHAHAIKTQFDSNAFVV 176

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE-RDELSWTTMMTGYVKN-DYLDAARE 246
             L+ +Y KC           +  A  +F+  P+ R+ + WT M+TGY +N D   A   
Sbjct: 177 TGLVDMYAKC---------KCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIEC 227

Query: 247 FLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
           F D   E                        I+ ++FT+ S+++AC +      G QVH 
Sbjct: 228 FRDMRGEG-----------------------IECNQFTFPSILTACGSISACGFGAQVHG 264

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366
            ++R+        ++ V +ALV +Y KCG ++ AR +   M   D VSWN+++   V  G
Sbjct: 265 CIVRSGFGA----NVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQG 320

Query: 367 LIDEAKSLF----------------------------------------EAMRERNLLSW 386
           L +EA SLF                                        E M +++++SW
Sbjct: 321 LGEEALSLFRIMHLRHMKIDEFTYPSLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISW 380

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
           T +++G   NG  EE L+LF +MR+ G  P        I   A L AL+N          
Sbjct: 381 TSLVTGCVHNGSYEEALRLFCEMRIMGIHP------DQIVIAAVLSALDN---------- 424

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
                      +L++MYA+CG +E AN VF++M   D ++W A+I    Q+G        
Sbjct: 425 -----------SLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNG-------- 465

Query: 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
                                          GR YF++M   YGI PG +HYA  IDLL 
Sbjct: 466 ------------------------------RGRDYFQSMEEVYGIKPGPEHYACMIDLLG 495

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626
           R+GK  EAK++++ +  +P A +W+ALLA CR+HGN++LG +AA  LF+L P +A  YVL
Sbjct: 496 RSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAANNLFELEPKNAVPYVL 555

Query: 627 LSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKY 686
           LSN+Y+  G+W++AA+ R+LM+ RGV KEPGCSWIE+ +KVH F+ +D +HP    +Y  
Sbjct: 556 LSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSK 615

Query: 687 LEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKN 746
           ++++++ +++ GYVPD  F LHDM+ + KE  L+ HSEKLAVAFGL+ +P GA +R+ KN
Sbjct: 616 VDEIMILIKEAGYVPDMNFALHDMDEEGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKN 675

Query: 747 LRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           LRICGDCH A K++S V  R +++RD   FHHFR+G CSC DYW
Sbjct: 676 LRICGDCHTAMKYVSGVFHRHVILRDSNCFHHFREGACSCSDYW 719



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 117/384 (30%), Positives = 190/384 (49%), Gaps = 39/384 (10%)

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           KCG+V++AR +F+ MP+RD  SWN ++ AY ++G ++EA+ LF     R+ ++W+ +ISG
Sbjct: 53  KCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISG 112

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
             + G   E L+LF +M+ EG +P  + +   +  C+    LE G+Q+HA  + + +DS+
Sbjct: 113 YCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSN 172

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNV-DSVSWNAMIAALGQHGNGARAIELYEQML 511
                 L+ MYA+C  +  A  +F   P+  + V W AM+    Q+G+G +AIE +  M 
Sbjct: 173 AFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMR 232

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY---GIPPGEDHYARFIDLLCRA 568
            EGI  ++ TF ++L+AC        G +    +HG     G        +  +D+  + 
Sbjct: 233 GEGIECNQFTFPSILTACGSISACGFGAQ----VHGCIVRSGFGANVFVGSALVDMYSKC 288

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP-HHAG----T 623
           G  S A+ +++++        W +++ GC   G   LG + A  LF++M   H      T
Sbjct: 289 GDLSNARRMLETMEVDDPVS-WNSMIVGCVRQG---LG-EEALSLFRIMHLRHMKIDEFT 343

Query: 624 YVLLSN-----MYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHP 678
           Y  L N     MYA  G +D A  V + M D+ V      SW          LV    H 
Sbjct: 344 YPSLVNNALVDMYAKRGYFDYAFDVFEKMTDKDV-----ISWTS--------LVTGCVH- 389

Query: 679 EAQAVYKYLEQLVLEMRKLGYVPD 702
                Y+   +L  EMR +G  PD
Sbjct: 390 --NGSYEEALRLFCEMRIMGIHPD 411



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 133/517 (25%), Positives = 220/517 (42%), Gaps = 97/517 (18%)

Query: 159 LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA---ARR 215
           L +     K C Q+  T +      F   +N+  +V+    S+  +S+ S  G    AR+
Sbjct: 6   LGIYTFSRKVCHQLEHTELNHHIRRF---VNSCGTVHSSSDSNWVLSNLSKCGRVDDARK 62

Query: 216 VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLM 275
           +FD MP+RDE SW TM+  Y  +  L+ AR+          + W++LISGY      +  
Sbjct: 63  LFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEA 122

Query: 276 LRI---------QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
           L +         + ++FT+ SV+  C+   L   GKQ+HA+ ++T+          V   
Sbjct: 123 LELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNA----FVVTG 178

Query: 327 LVTLYWKCGKVNEARDIFNQMPE-RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
           LV +Y KC  + EA  +F   P+ R+ V W A                            
Sbjct: 179 LVDMYAKCKCILEAEYLFELAPDKRNHVLWTA---------------------------- 210

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
              M++G +QNG G + ++ F  MR EG +   + F   +T+C  + A   G Q+H  +V
Sbjct: 211 ---MVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIV 267

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIE 505
            SG+ +++  G+AL+ MY++CG +  A  +  TM   D VSWN+MI    + G G  A+ 
Sbjct: 268 RSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALS 327

Query: 506 LYEQM------LKEGILP------------------------------DRITFLTVLSAC 529
           L+  M      + E   P                              D I++ ++++ C
Sbjct: 328 LFRIMHLRHMKIDEFTYPSLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGC 387

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYA--------RFIDLLCRAGKFSEAKDVIDSL 581
            H G  +E  R F  M    GI P +   A          + +  + G   +A  V DS+
Sbjct: 388 VHNGSYEEALRLFCEMR-IMGIHPDQIVIAAVLSALDNSLVSMYAKCGCIEDANKVFDSM 446

Query: 582 PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
             +     W AL+ G   +G      Q+ E+++ + P
Sbjct: 447 EIQ-DVITWTALIVGYAQNGRGRDYFQSMEEVYGIKP 482



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 133/356 (37%), Gaps = 100/356 (28%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF----------------------- 73
           VH  ++ SGF     + + L+D+Y K   L  AR +                        
Sbjct: 262 VHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGL 321

Query: 74  ------------------DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTV 115
                             DE   P +V    L+  Y+       A ++F K  +  +D +
Sbjct: 322 GEEALSLFRIMHLRHMKIDEFTYPSLV-NNALVDMYAKRGYFDYAFDVFEK--MTDKDVI 378

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
            + +++T   HN +   A+ LF +MR   + PD     +VLSAL                
Sbjct: 379 SWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSALD--------------- 423

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
                        N+L+S+Y KC           +  A +VFD M  +D ++WT ++ GY
Sbjct: 424 -------------NSLVSMYAKC---------GCIEDANKVFDSMEIQDVITWTALIVGY 461

Query: 236 VKNDYLDAAREFLDGMSENVGVA-----WNALI-----SGYVHRELKML-MLRIQLDEFT 284
            +N      R++   M E  G+      +  +I     SG +    ++L  + +Q D   
Sbjct: 462 AQN---GRGRDYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATV 518

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
           + ++++AC   G   LG++    L   E K    + L     L  LY   GK  EA
Sbjct: 519 WKALLAACRVHGNVELGERAANNLFELEPKNAVPYVL-----LSNLYSAAGKWEEA 569


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 281/845 (33%), Positives = 428/845 (50%), Gaps = 142/845 (16%)

Query: 14   NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF 73
            N Y S LQLC  +  +     + VH+ +IS+G    E +  +L+ +Y     LV  R +F
Sbjct: 370  NSYCSVLQLCAEKKSLED--GKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIF 427

Query: 74   DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVF-YNAMITAYSHNSNGHA 132
            D+I                                  M D VF +N +++ Y+   N   
Sbjct: 428  DKI----------------------------------MNDKVFLWNLLMSEYAKIGNFRE 453

Query: 133  AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
            ++ LF+ M++  V  + +TFT VL   A +  + K+C ++H  V+K G G  T+V+N+LI
Sbjct: 454  SVSLFKKMQKLGVVGNCYTFTCVLKCFAAL-GKVKECKRVHGYVLKLGFGSNTAVVNSLI 512

Query: 193  SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
            + Y K     F    S    A  +FDE+ E D +SW +M+ G V N +     E      
Sbjct: 513  AAYFK-----FGGVES----AHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIF---- 559

Query: 253  ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
                              ++ML+L +++D  T  SV+ A AN G   LG+ +H + ++  
Sbjct: 560  ------------------IQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKAC 601

Query: 313  AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
                  FS    N L+ +Y KCG +N A ++F +M +  +VSW + ++AYV  GL  +A 
Sbjct: 602  FSEEVVFS----NTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAI 657

Query: 373  SLFEAMRER---------------------------------------NLLSWTVMISGL 393
             LF+ M+ +                                       NL     +I+  
Sbjct: 658  GLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMY 717

Query: 394  AQNGYGEEGLKLFSQMRLEG------------------------------FKPCDYAFAG 423
            A+ G  EE   +FS++ ++                               FKP D   A 
Sbjct: 718  AKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQFKPDDITMAC 777

Query: 424  AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
             + +CAGL AL+ GR++H  ++  GY S L    AL+ MYA+CG++  A  +F+ +P  D
Sbjct: 778  VLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKD 837

Query: 484  SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFE 543
             +SW  MIA  G HG G  AI  + +M   GI PD  +F  +L+AC+H+GL+ EG ++F 
Sbjct: 838  LISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFN 897

Query: 544  TMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNI 603
            +M    G+ P  +HYA  +DLL R G  S+A   I+S+P KP   IW  LL+GCRIH ++
Sbjct: 898  SMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDV 957

Query: 604  DLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEV 663
             L  + AE +F+L P +   YV+L+N+YA   +W++  ++RK M+ RG K+ PGCSWIEV
Sbjct: 958  KLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEV 1017

Query: 664  DNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHS 723
              K ++F+  ++ HP+A+ +   L +L ++M+   Y    ++VL + +  +KE     HS
Sbjct: 1018 GGKFNIFVAGNSKHPQAKRIDVLLRKLTMQMQNEDYFSMFRYVLINEDDMEKEMIQCGHS 1077

Query: 724  EKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGK 783
            EK A+AFG++ LP G TVRV KN R+CGDCH   KFMSK   REIV+RD  RFHHF+DG 
Sbjct: 1078 EKSAMAFGILNLPPGRTVRVSKNQRVCGDCHEMGKFMSKTTKREIVLRDSNRFHHFKDGL 1137

Query: 784  CSCGD 788
            CSC D
Sbjct: 1138 CSCRD 1142


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  477 bits (1228), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 238/601 (39%), Positives = 360/601 (59%), Gaps = 67/601 (11%)

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           N+LI +Y KC           +  ARRVFD MP RD  SWT+++ GY +ND  D A   L
Sbjct: 103 NSLIHLYCKC---------GAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLL 153

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
            GM                      L  R + + FT+ S++ A   S    +G+Q+HA  
Sbjct: 154 PGM----------------------LRGRFKPNGFTFASLLKAAGASASSGIGEQIHALT 191

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
           ++ +        + V +AL+ +Y +CG+                               +
Sbjct: 192 VKYDWHD----DVYVGSALLDMYARCGR-------------------------------M 216

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
           D A ++F+ +  +N +SW  +I+G A+ G GE  L +F++M+  GF+   + ++   ++ 
Sbjct: 217 DMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAI 276

Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
           AG+GALE G+ +HA ++ SG   S   GN ++ MYA+ G +  A  VF+ +   D V+WN
Sbjct: 277 AGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWN 336

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP 548
           +M+ A  Q+G G  A+  +E+M K G+  ++ITFL++L+AC+H GLVKEG++YF+ M   
Sbjct: 337 SMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMK-E 395

Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
           Y + P  DHY   +DLL RAG  ++A   I  +P KP+A +W ALL  CR+H N  +G  
Sbjct: 396 YNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQF 455

Query: 609 AAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVH 668
           AA+ +F+L P   G  VLL N+YA+ G+WD AARVRK+M+  GVKKEP CSW+E++N VH
Sbjct: 456 AADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVH 515

Query: 669 VFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAV 728
           +F+ +D  HP ++ +YK  E++ +++RK GYVP+T +VL  ++  +++  L  HSEK+A+
Sbjct: 516 MFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIAL 575

Query: 729 AFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788
           AF L+ +P GAT+R++KN+RICGDCH+AF+++SKV  REIVVRD  RFHHF  G CSCGD
Sbjct: 576 AFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGD 635

Query: 789 Y 789
           Y
Sbjct: 636 Y 636



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 154/336 (45%), Gaps = 48/336 (14%)

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           Y S+I+ACA        + +HA+L  ++       S+ ++N+L+ LY KCG V +AR +F
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAG----SVFLDNSLIHLYCKCGAVADARRVF 122

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           + MP RD+ SW ++++ Y                               AQN   +E L 
Sbjct: 123 DGMPARDMCSWTSLIAGY-------------------------------AQNDMPDEALG 151

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           L   M    FKP  + FA  + +     +   G Q+HA  V   +   +  G+AL+ MYA
Sbjct: 152 LLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYA 211

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           RCG ++ A  VF+ + + + VSWNA+IA   + G+G   + ++ +M + G      T+ +
Sbjct: 212 RCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSS 271

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA----RFIDLLCRAGKFSEAKDVIDS 580
           V SA    G +++G+     M     I  GE   A      +D+  ++G   +A+ V D 
Sbjct: 272 VFSAIAGIGALEQGKWVHAHM-----IKSGERLSAFVGNTILDMYAKSGSMIDARKVFDR 326

Query: 581 LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           +  K     W ++L     +G   LG +A     ++
Sbjct: 327 VD-KKDVVTWNSMLTAFAQYG---LGREAVTHFEEM 358



 Score =  132 bits (332), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 169/387 (43%), Gaps = 73/387 (18%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           AR++HAH+  S F     + N LI +YCK   +  AR +FD +P                
Sbjct: 83  ARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPA--------------- 127

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                             RD   + ++I  Y+ N     A+ L   M R   KP+ FTF 
Sbjct: 128 ------------------RDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFA 169

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           S+L A A          Q+H   VK        V +AL+ +Y +C           M  A
Sbjct: 170 SLLKA-AGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARC---------GRMDMA 219

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
             VFD++  ++ +SW  ++ G+ +    +        M  N          G+       
Sbjct: 220 IAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRN----------GF------- 262

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
                +   FTY+SV SA A  G    GK VHA+++++  +     S  V N ++ +Y K
Sbjct: 263 -----EATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGER----LSAFVGNTILDMYAK 313

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE----RNLLSWTVM 389
            G + +AR +F+++ ++D+V+WN++L+A+   GL  EA + FE MR+     N +++  +
Sbjct: 314 SGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSI 373

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKP 416
           ++  +  G  +EG + F  M+    +P
Sbjct: 374 LTACSHGGLVKEGKQYFDMMKEYNLEP 400



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 140/283 (49%), Gaps = 39/283 (13%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+   + L+  Y+    + +A  +F++  L+ ++ V +NA+I  ++   +G   + +F +
Sbjct: 199 DVYVGSALLDMYARCGRMDMAIAVFDQ--LESKNGVSWNALIAGFARKGDGETTLLMFAE 256

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M+R+  +  +FT++SV SA+A I   E Q   +H  ++KSG  L   V N ++ +Y K  
Sbjct: 257 MQRNGFEATHFTYSSVFSAIAGIGALE-QGKWVHAHMIKSGERLSAFVGNTILDMYAKSG 315

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
           S         M  AR+VFD + ++D ++W +M+T + +                  G+  
Sbjct: 316 S---------MIDARKVFDRVDKKDVVTWNSMLTAFAQ-----------------YGLGR 349

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
            A+     H E +M    + L++ T+ S+++AC++ GL + GKQ   + +  E    PE 
Sbjct: 350 EAV----THFE-EMRKCGVHLNQITFLSILTACSHGGLVKEGKQY--FDMMKEYNLEPEI 402

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSA 361
              V   +V L  + G +N+A     +MP +   + W A+L +
Sbjct: 403 DHYVT--VVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGS 443


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 245/639 (38%), Positives = 369/639 (57%), Gaps = 61/639 (9%)

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR--- 269
           AR++FDEMP+R+ +SW  +++GY+KN  +D AR+  D M E   V+W AL+ GYVH    
Sbjct: 67  ARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKV 126

Query: 270 -----------ELKMLMLRIQLDEFTYTSVIS-ACA-------------NSGLFRLGKQV 304
                      E   +   + L  F     I  AC               S +  L K+ 
Sbjct: 127 DVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEG 186

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVS 364
                R       E S+     +VT Y +  +V++AR IF+ MPE+  VSW ++L  YV 
Sbjct: 187 RVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQ 246

Query: 365 AGLIDEAKSLFE-------------------------------AMRERNLLSWTVMISGL 393
            G I++A+ LFE                               +M+ERN  SW  +I   
Sbjct: 247 NGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIH 306

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL 453
            +NG+  E L LF  M+ +G +P        ++ CA L +L +G+Q+HAQLV   +D  +
Sbjct: 307 ERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDV 366

Query: 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM-LK 512
              + L+TMY +CG +  +  +F+  P+ D + WN++I+    HG G  A++++ +M L 
Sbjct: 367 YVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLS 426

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
               P+ +TF+  LSAC++AG+V+EG + +E+M   +G+ P   HYA  +D+L RAG+F+
Sbjct: 427 GSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFN 486

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632
           EA ++IDS+  +P A +W +LL  CR H  +D+    A++L ++ P ++GTY+LLSNMYA
Sbjct: 487 EAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYA 546

Query: 633 NLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDD-TAHPEAQAVYKYLEQLV 691
           + GRW D A +RKLM+ R V+K PGCSW EV+NKVH F      +HPE +++ K L++L 
Sbjct: 547 SQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELD 606

Query: 692 LEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICG 751
             +R+ GY PD  + LHD++ ++K  +L  HSE+LAVA+ L+KL  G  +RV+KNLR+C 
Sbjct: 607 GLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCS 666

Query: 752 DCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           DCH A K +SKV  REI++RD  RFHHFR+G+CSC DYW
Sbjct: 667 DCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 127/497 (25%), Positives = 222/497 (44%), Gaps = 100/497 (20%)

Query: 48  PREHII--NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFN 105
           P  +II  N L+  Y K+ ++  AR +FD +P+ ++V+ T L+  Y  +  V +A  +F 
Sbjct: 75  PDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFW 134

Query: 106 KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEE 165
           K P K  + V +  M+  +  +     A +L+ +M  D    DN   TS++  L      
Sbjct: 135 KMPEK--NKVSWTVMLIGFLQDGRIDDACKLY-EMIPD---KDNIARTSMIHGL------ 182

Query: 166 EKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDE 225
              C +     V     +F  +    +  +   V+    ++R  +  AR++FD MPE+ E
Sbjct: 183 ---CKEGR---VDEAREIFDEMSERSVITWTTMVTGYGQNNR--VDDARKIFDVMPEKTE 234

Query: 226 LSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR---------------- 269
           +SWT+M+ GYV+N  ++ A E  + M     +A NA+ISG   +                
Sbjct: 235 VSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKER 294

Query: 270 -----------------ELKMLMLRIQLDEF-------TYTSVISACANSGLFRLGKQVH 305
                            EL+ L L I + +        T  S++S CA+      GKQVH
Sbjct: 295 NDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVH 354

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365
           A L+R +     +  + V + L+T+Y KCG++ +++ IF++ P +D++ WN+I+S Y S 
Sbjct: 355 AQLVRCQF----DVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASH 410

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG-FKPCDYAFAGA 424
           GL                               GEE LK+F +M L G  KP +  F   
Sbjct: 411 GL-------------------------------GEEALKVFCEMPLSGSTKPNEVTFVAT 439

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA-LITMYARCGVVEAANCVFNTMP-NV 482
           +++C+  G +E G +++  +        ++A  A ++ M  R G    A  + ++M    
Sbjct: 440 LSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEP 499

Query: 483 DSVSWNAMIAALGQHGN 499
           D+  W +++ A   H  
Sbjct: 500 DAAVWGSLLGACRTHSQ 516



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/420 (22%), Positives = 204/420 (48%), Gaps = 35/420 (8%)

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY-----V 267
           AR++FD    +   SW +M+ GY  N     AR+  D M +   ++WN L+SGY     +
Sbjct: 36  ARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVSGYMKNGEI 95

Query: 268 HRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327
               K+  L  + +  ++T+++    ++G   + + +   +        PE +      +
Sbjct: 96  DEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKM--------PEKNKVSWTVM 147

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWT 387
           +  + + G++++A  ++  +P++D ++  +++      G +DEA+ +F+ M ER++++WT
Sbjct: 148 LIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWT 207

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA-QLVH 446
            M++G  QN   ++  K+F  M     +  + ++   +     +G ++NGR   A +L  
Sbjct: 208 TMVTGYGQNNRVDDARKIFDVMP----EKTEVSWTSML-----MGYVQNGRIEDAEELFE 258

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
                 + A NA+I+   + G +  A  VF++M   +  SW  +I    ++G    A++L
Sbjct: 259 VMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDL 318

Query: 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR-YFETMHGPYGIPPGEDHY--ARFID 563
           +  M K+G+ P   T +++LS C     +  G++ + + +   + +    D Y  +  + 
Sbjct: 319 FILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDV----DVYVASVLMT 374

Query: 564 LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623
           +  + G+  ++K + D  P K    +W ++++G   HG   LG + A ++F  MP    T
Sbjct: 375 MYIKCGELVKSKLIFDRFPSK-DIIMWNSIISGYASHG---LG-EEALKVFCEMPLSGST 429



 Score =  105 bits (263), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 157/363 (43%), Gaps = 65/363 (17%)

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367
           L RT +   P    P  N  +T   + GK++EAR +F+    + + SWN++++ Y +  +
Sbjct: 7   LRRTYSTTIPP---PTANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLM 63

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
             +A+ LF+ M +RN++SW  ++SG  +NG  +E  K+F  M                  
Sbjct: 64  PRDARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMP----------------- 106

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
                                 + ++ +  AL+  Y   G V+ A  +F  MP  + VSW
Sbjct: 107 ----------------------ERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSW 144

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDR--ITFLTVLSACNHAGLVKEGRRYFETM 545
             M+    Q G    A +LYE      ++PD+  I   +++      G V E R  F+ M
Sbjct: 145 TVMLIGFLQDGRIDDACKLYE------MIPDKDNIARTSMIHGLCKEGRVDEAREIFDEM 198

Query: 546 HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDL 605
                I      +   +    +  +  +A+ + D +P K     W ++L G   +G    
Sbjct: 199 SERSVIT-----WTTMVTGYGQNNRVDDARKIFDVMPEKTEVS-WTSMLMGYVQNGR--- 249

Query: 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDN 665
            I+ AE+LF++MP      +  + M + LG+  + A+ R++     +K+    SW  V  
Sbjct: 250 -IEDAEELFEVMP--VKPVIACNAMISGLGQKGEIAKARRVF--DSMKERNDASWQTV-I 303

Query: 666 KVH 668
           K+H
Sbjct: 304 KIH 306



 Score = 43.5 bits (101), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + VHA ++   F    ++ + L+ +Y K  +LV ++ +FD  P  DI+   ++I+ Y++
Sbjct: 350 GKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYAS 409

Query: 94  SDNVKLAREMFNKTPLK---MRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
               + A ++F + PL      + V + A ++A S+       ++++  M
Sbjct: 410 HGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESM 459


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 264/787 (33%), Positives = 411/787 (52%), Gaps = 109/787 (13%)

Query: 7   DYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKL 66
           D +  +   +   L++C     +   + + +H  ++ SGF      +  L ++Y K  ++
Sbjct: 129 DEVEPVVYNFTYLLKVCGDEAEL--RVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQV 186

Query: 67  VYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSH 126
             AR +FD +P+ D+V+  T++A YS +   ++A EM N                     
Sbjct: 187 HEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNL-------------------- 226

Query: 127 NSNGHAAIELFRDMRRDDVKPDNFTFTSVL---SALALIVEEEKQCMQMHCTVVKSGTGL 183
                        M  +++KP   T  SVL   SAL LI    +   ++H   +++G   
Sbjct: 227 -------------MCEENLKPSFITIVSVLPAVSALRLI----RIGKEIHGYAMRAGFDS 269

Query: 184 FTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDA 243
             ++  AL+ +Y KC S         +  AR +FD M ER+ +SW +M+  YV+N+    
Sbjct: 270 LVNIATALVDMYAKCGS---------LKTARLLFDGMLERNVVSWNSMIDAYVQNENPKE 320

Query: 244 AREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ 303
           A                           KML   ++  + +    + ACA+ G    G+ 
Sbjct: 321 AMVIFQ----------------------KMLDEGVKPTDVSVMGALHACADLGDLERGRF 358

Query: 304 VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV 363
           +H   +  E     + ++ V N+L+++Y KC +V+ A  +F ++  R +VSWNA      
Sbjct: 359 IHKLSVELEL----DRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNA------ 408

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
                                    MI G AQNG   E L  FSQM+    KP  + +  
Sbjct: 409 -------------------------MILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVS 443

Query: 424 AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
            IT+ A L    + + +H  ++ +  D ++    AL+ MYA+CG +  A  +F+ M    
Sbjct: 444 VITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERH 503

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFE 543
             +WNAMI   G HG G  A+EL+E+M K  I P+ +TFL+V+SAC+H+GLV+ G + F 
Sbjct: 504 VTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFH 563

Query: 544 TMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNI 603
            M   Y I P  DHY   +DLL RAG+ +EA D I  +P KP+  ++ A+L  C+IH N+
Sbjct: 564 MMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNV 623

Query: 604 DLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEV 663
           +   + AE+LF+L P   G +VLL+N+Y     W+   +VR  M  +G++K PGCS +E+
Sbjct: 624 NFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEI 683

Query: 664 DNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHS 723
            N+VH F    TAHP ++ +Y +LE+L+ ++++ GYVPDT  +L  +E D KE  LS+HS
Sbjct: 684 KNEVHSFFSGSTAHPSSKKIYAFLEKLICQIKEAGYVPDTNLIL-GLEDDVKEQLLSSHS 742

Query: 724 EKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGK 783
           EKLA++FGL+    G T+ V KNLR+C DCHNA K++S V GREI+VRD +RFHHF++G 
Sbjct: 743 EKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIIVRDMQRFHHFKNGA 802

Query: 784 CSCGDYW 790
           CSCGDYW
Sbjct: 803 CSCGDYW 809



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 170/606 (28%), Positives = 272/606 (44%), Gaps = 107/606 (17%)

Query: 28  PITSSLARSVHAHMISS-GFKPR---EHIINRLIDIYCKSLK-------LVYARTLFDEI 76
           PI+SS     H H +S   + P    EH    L++  C SLK       L++   L+ E 
Sbjct: 16  PISSS-----HRHFLSQRNYIPANVYEHPAALLLE-RCSSLKELRHILPLIFKNGLYQEH 69

Query: 77  PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
                + +T L++ +    +V  A  +F   P+  +  V Y  M+  ++  S+   A++ 
Sbjct: 70  -----LFQTKLVSLFCRYGSVDEAARVFE--PIDKKLNVLYYTMLKGFAKVSDLDKALKF 122

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           F  MR D+V+P  + FT +L        E +   ++H  +VKSG  L    +  L ++Y 
Sbjct: 123 FVRMRDDEVEPVVYNFTYLLKVCG-DEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYA 181

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           KC           +  AR+VFD MPERD +SW T++ GY +N     A E ++ M E   
Sbjct: 182 KCRQ---------VHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEE-- 230

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
                                ++    T  SV+ A +   L R+GK++H Y +R      
Sbjct: 231 --------------------NLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRA----- 265

Query: 317 PEFSLPVN--NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
             F   VN   ALV +Y KCG +  AR +F+ M ER++VSWN+++ AYV           
Sbjct: 266 -GFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYV----------- 313

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
                               QN   +E + +F +M  EG KP D +  GA+ +CA LG L
Sbjct: 314 --------------------QNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDL 353

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
           E GR +H   V    D ++S  N+LI+MY +C  V+ A  +F  + +   VSWNAMI   
Sbjct: 354 ERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGF 413

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY---GI 551
            Q+G    A+  + QM    + PD  T+++V++A     +    +     +HG      +
Sbjct: 414 AQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAK----WIHGVVMRNCL 469

Query: 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611
                     +D+  + G    A+ + D +  +     W A++ G   HG   +G +AA 
Sbjct: 470 DKNVFVTTALVDMYAKCGAIMIARLIFDMMS-ERHVTTWNAMIDGYGTHG---IG-KAAL 524

Query: 612 QLFQLM 617
           +LF+ M
Sbjct: 525 ELFEEM 530


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 242/596 (40%), Positives = 344/596 (57%), Gaps = 23/596 (3%)

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL-----DGMSENVGVAWNALISGYV 267
           AR V D MP R  + W+ ++  +  +   + A   L     DG+  NV + WN L+SG  
Sbjct: 74  ARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNV-ITWNGLVSGLN 132

Query: 268 H----RELKMLMLRIQLDEFT-----YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                R+  + ++R+  + F       +  +SA  + G   +G+Q+H Y+++   +    
Sbjct: 133 RSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCR---- 188

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
               V  AL+ +Y KCG+ +E   +F++    D+ S NA+++       + EA  LF   
Sbjct: 189 LDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREF 248

Query: 379 RER----NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
             R    N++SWT +++   QNG   E + LF +M+ EG +P        + + A + AL
Sbjct: 249 VGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAAL 308

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
            +GR  H   +  G+   +  G+AL+ MYA+CG V  A  +F  MP  + VSWNAMI   
Sbjct: 309 MHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGY 368

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
             HG    A+ L+  M      PD +TF  VL AC+ AG  +EGR YF  M   +GI P 
Sbjct: 369 AMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPR 428

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
            +HYA  + LL RAGK  +A D+I+ +PF+P   IW +LL  CR+HGN+ L   AAE LF
Sbjct: 429 MEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAEVAAENLF 488

Query: 615 QLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDD 674
           QL P +AG YVLLSN+YA+   WD   R+R +M+  G+KKE GCSWIE+ NKVH+ L  D
Sbjct: 489 QLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWIEIKNKVHMLLAGD 548

Query: 675 TAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMK 734
           ++HP   A+ + L+ L +EMR+LG+ P T +VLHD+E  +K+  LS HSEKLAVA GL+ 
Sbjct: 549 SSHPMMAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQEKDDILSVHSEKLAVALGLIS 608

Query: 735 LPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
              G  ++V+KNLRICGDCH A KF+S    REI VRD  RFHHF+DGKCSC DYW
Sbjct: 609 TSHGTPLQVIKNLRICGDCHEAMKFISSFERREIYVRDTNRFHHFKDGKCSCADYW 664



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 121/474 (25%), Positives = 208/474 (43%), Gaps = 80/474 (16%)

Query: 52  IINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKM 111
           + + L+  Y +      AR++ D +P   +V  + LIAA+++  + + A  +      +M
Sbjct: 57  VASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLE----RM 112

Query: 112 R------DTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEE 165
           R      + + +N +++  + +     A+     M  +   PD    +  LSA+   V +
Sbjct: 113 RSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVG-DVGD 171

Query: 166 EKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDE 225
                Q+H  VVK+G  L   V  ALI +Y KC  +  +          RVFDE    D 
Sbjct: 172 VAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIV---------RVFDESSHMDV 222

Query: 226 LSWTTMMTGYVKNDYLDAA----REFLD-GMSENVGVAWNALISGYVH--RELKMLML-- 276
            S   ++ G  +N  +  A    REF+  G+  NV V+W ++++  V   R+L+ + L  
Sbjct: 223 ASCNALVAGLSRNAQVSEALRLFREFVGRGIELNV-VSWTSIVACCVQNGRDLEAVDLFR 281

Query: 277 -----RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                 I+ +  T   V+ A AN      G+  H + LR          + V +ALV +Y
Sbjct: 282 EMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGF----HHDIYVGSALVDMY 337

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER----NLLSWT 387
            KCG+V +AR IF  MP R++VSWNA++  Y   G  + A  LF +M+      +L+++T
Sbjct: 338 AKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFT 397

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
            ++   +Q G+ EEG   F++M+ + G  P                     R  H     
Sbjct: 398 CVLGACSQAGWTEEGRSYFNEMQHKHGISP---------------------RMEHYA--- 433

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
                       ++T+  R G ++ A  + N MP   D   W +++ +   HGN
Sbjct: 434 -----------CMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGN 476



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 148/333 (44%), Gaps = 38/333 (11%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           ++   +H +++ +G +    +   LID+Y K  +      +FDE    D+ +   L+A  
Sbjct: 173 AVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGL 232

Query: 92  SASDNVKLAREMFNKTPLK--MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
           S +  V  A  +F +   +    + V + +++     N     A++LFR+M+ + ++P++
Sbjct: 233 SRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNS 292

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
            T   VL A A I          HC  ++ G      V +AL+ +Y KC           
Sbjct: 293 VTIPCVLPAFANIA-ALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKC---------GR 342

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +  AR +F+ MP R+ +SW  M+ GY            + G +EN    + ++ S     
Sbjct: 343 VRDARMIFEAMPYRNVVSWNAMIGGYA-----------MHGEAENAVRLFRSMQSS---- 387

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
                  + + D  T+T V+ AC+ +G    G+   +Y    + K      +     +VT
Sbjct: 388 -------KEKPDLVTFTCVLGACSQAGWTEEGR---SYFNEMQHKHGISPRMEHYACMVT 437

Query: 330 LYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
           L  + GK+++A DI NQMP E D   W ++L +
Sbjct: 438 LLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGS 470


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 269/756 (35%), Positives = 404/756 (53%), Gaps = 106/756 (14%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           VHA ++ +GF+    + N LI +Y KS  +  A  +FD                      
Sbjct: 227 VHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFD---------------------- 264

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
                       + +RD+V +N MI  Y+         ++F  MR   VK     F + L
Sbjct: 265 -----------SMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTAL 313

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVS-SPFVSSRSLMGAARR 215
             L     E     Q+HC VVK+G      +  AL+  Y KC S        S+  AA  
Sbjct: 314 K-LCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHN 372

Query: 216 VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLM 275
           V         ++WT M+ G+V+N+    A +    MS                RE     
Sbjct: 373 V---------VTWTAMIGGFVQNNNNKKAVDLFCQMS----------------RE----- 402

Query: 276 LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG 335
             ++ + FTY++V++   +S L     Q+HA +++   +  P  +               
Sbjct: 403 -GVRPNHFTYSTVLAGKPSSLL----SQLHAQIIKAYYEKVPSVA--------------- 442

Query: 336 KVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQ 395
                                A+L AYV  G + E+  +F ++  +++++W+ M++GLAQ
Sbjct: 443 --------------------TALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQ 482

Query: 396 NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA-LENGRQLHAQLVHSGYDSSLS 454
               E+ +++F Q+  EG KP +Y F+  I +C+   A +E+G+Q+HA  V SG  ++L 
Sbjct: 483 TRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALC 542

Query: 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
             +AL+TMY++ G +E+A  VF      D VSWN+MI   GQHG+  +A+E+++ M  +G
Sbjct: 543 VSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQG 602

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
           +  D +TF+ VL+AC HAGLV+EG +YF  M   Y I    +HY+  +DL  RAG F +A
Sbjct: 603 LPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKA 662

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL 634
            D+I+ +PF  S  IW  LLA CR+H N++LG  AAE+L  L P+ A  YVLLSN++A  
Sbjct: 663 MDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVA 722

Query: 635 GRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEM 694
           G W++ A VRKLM +R VKKE GCSWIE+ N++  FL  D +HP +  VY  LE+L +++
Sbjct: 723 GNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKL 782

Query: 695 RKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCH 754
           + +GY PDT +V HD+E + KE  LS HSE+LA+A+GL+ LP GA +++ KNLRICGDCH
Sbjct: 783 KDMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCH 842

Query: 755 NAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           N  + +S +  R ++VRD  RFHHF+ G CSCG YW
Sbjct: 843 NVIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 149/567 (26%), Positives = 263/567 (46%), Gaps = 102/567 (17%)

Query: 59  IYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYN 118
           ++C+SLK  +           D+   T+L+  Y  +++ +  R +F++  +K  + V + 
Sbjct: 126 VHCQSLKSGFLE---------DVSVGTSLVDMYMKTEDFEDGRGIFDEMGIK--NVVSWT 174

Query: 119 AMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA--LIVEEEKQCMQMHCTV 176
           ++++ Y+ N      I L   M+ + V P+ FTF +VL ALA   I+E     +Q+H  +
Sbjct: 175 SLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIE---GGVQVHAMI 231

Query: 177 VKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV 236
           VK+G    T V NALI +Y+K           ++G A  VFD M  RD ++W  M+ GY 
Sbjct: 232 VKNGFEFTTFVCNALICMYLK---------SEMVGDAEAVFDSMVVRDSVTWNIMIGGYA 282

Query: 237 KNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSG 296
              +      +L+G                 HR   M +  ++L    + + +  C+   
Sbjct: 283 AIGF------YLEGFQ-------------MFHR---MRLAGVKLSRTVFCTALKLCSQQR 320

Query: 297 LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWN 356
                KQ+H  ++    K   EF+  +  AL+  Y KC  V+EA  +F+           
Sbjct: 321 ELNFTKQLHCGVV----KNGYEFAQDIRTALMVTYSKCSSVDEAFKLFS----------- 365

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
                     + D A          N+++WT MI G  QN   ++ + LF QM  EG +P
Sbjct: 366 ----------MADAA---------HNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRP 406

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG-VVEAANCV 475
             + ++   T  AG  +     QLHAQ++ + Y+   S   AL+  Y + G VVE+A  V
Sbjct: 407 NHFTYS---TVLAGKPS-SLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESAR-V 461

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC-NHAGL 534
           F ++P  D V+W+AM+  L Q  +  +A+E++ Q++KEG+ P+  TF +V++AC + A  
Sbjct: 462 FYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAAT 521

Query: 535 VKEGRRYFETMHGPYGIPPGEDH----YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590
           V+ G++   T      +  G+ +     +  + +  + G    A+ V      +     W
Sbjct: 522 VEHGKQIHAT-----AVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVS-W 575

Query: 591 EALLAGCRIHGNIDLGIQAAEQLFQLM 617
            +++ G   HG+     + A ++FQ+M
Sbjct: 576 NSMITGYGQHGD----AKKALEVFQIM 598



 Score =  179 bits (453), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 136/507 (26%), Positives = 233/507 (45%), Gaps = 90/507 (17%)

Query: 98  KLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLS 157
           + A ++F++TPLK  D   YN ++  +S N++   A+ LF+D+    +  D  T +  L 
Sbjct: 55  RYAHQLFDETPLK--DISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALK 112

Query: 158 ALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVF 217
              ++ ++     Q+HC  +KSG     SV  +L+ +Y+K  +  F   R        +F
Sbjct: 113 VCGVLFDQVVG-RQVHCQSLKSGFLEDVSVGTSLVDMYMK--TEDFEDGRG-------IF 162

Query: 218 DEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLR 277
           DEM  ++ +SWT++++GY +N           G+++ V           +H   +M M  
Sbjct: 163 DEMGIKNVVSWTSLLSGYARN-----------GLNDEV-----------IHLINQMQMEG 200

Query: 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
           +  + FT+ +V+ A A+  +   G QVHA ++    K   EF+  V NAL+ +Y K   V
Sbjct: 201 VNPNGFTFATVLGALADESIIEGGVQVHAMIV----KNGFEFTTFVCNALICMYLKSEMV 256

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNG 397
            +A  +F+ M  RD V+WN ++  Y + G                               
Sbjct: 257 GDAEAVFDSMVVRDSVTWNIMIGGYAAIG------------------------------- 285

Query: 398 YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN 457
           +  EG ++F +MRL G K     F  A+  C+    L   +QLH  +V +GY+ +     
Sbjct: 286 FYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRT 345

Query: 458 ALITMYARCGVVEAANCVFNTMPNV-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
           AL+  Y++C  V+ A  +F+      + V+W AMI    Q+ N  +A++L+ QM +EG+ 
Sbjct: 346 ALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVR 405

Query: 517 PDRITFLTVLSACN-------HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
           P+  T+ TVL+          HA ++K    Y+E       +P         +D   + G
Sbjct: 406 PNHFTYSTVLAGKPSSLLSQLHAQIIKA---YYEK------VPSVA---TALLDAYVKTG 453

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAG 596
              E+  V  S+P K     W A+L G
Sbjct: 454 NVVESARVFYSIPAKDIVA-WSAMLTG 479



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 151/354 (42%), Gaps = 70/354 (19%)

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVA 258
           S PF+S  S    A ++FDE P +D   +  ++  + +N++  +A   F D  S  +GV 
Sbjct: 44  SLPFISLPSRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGV- 102

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                                 D  T +  +  C       +G+QVH   L++       
Sbjct: 103 ----------------------DGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLE--- 137

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
             + V  +LV +Y K     + R IF++M  +++VSW ++LS Y                
Sbjct: 138 -DVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGY---------------- 180

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
                          A+NG  +E + L +QM++EG  P  + FA  + + A    +E G 
Sbjct: 181 ---------------ARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGV 225

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           Q+HA +V +G++ +    NALI MY +  +V  A  VF++M   DSV+WN MI      G
Sbjct: 226 QVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIG 285

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACN-----------HAGLVKEGRRY 541
                 +++ +M   G+   R  F T L  C+           H G+VK G  +
Sbjct: 286 FYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEF 339



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 147/334 (44%), Gaps = 72/334 (21%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
           SSL   +HA +I + ++    +   L+D Y K+  +V +  +F  IP  DIVA       
Sbjct: 420 SSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVA------- 472

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
                                     ++AM+T  +   +   A+E+F  + ++ VKP+ +
Sbjct: 473 --------------------------WSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEY 506

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           TF+SV++A +      +   Q+H T VKSG      V +AL+++Y         S +  +
Sbjct: 507 TFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMY---------SKKGNI 557

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
            +A +VF    ERD +SW +M+TGY ++     A E    M +N G              
Sbjct: 558 ESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIM-QNQG-------------- 602

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA--KPTPEFSLPVNNALV 328
                  + LD+ T+  V++AC ++GL   G++    +++     K    +S      +V
Sbjct: 603 -------LPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYS-----CMV 650

Query: 329 TLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
            LY + G  ++A DI N MP       W  +L+A
Sbjct: 651 DLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAA 684


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 264/713 (37%), Positives = 396/713 (55%), Gaps = 76/713 (10%)

Query: 81  IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
           I    +LI  Y    NV+ AR +F+KT +K    V +N+MI+ Y+ N     A+ +F  M
Sbjct: 233 IPVSNSLINLYLKCGNVRKARILFDKTEVK--SVVTWNSMISGYAANGLDLEALGMFYSM 290

Query: 141 RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVS 200
           R + V+    +F S++  L   ++E +   Q+HC+VVK G     ++  AL+  Y KC++
Sbjct: 291 RLNHVRLSESSFASIIK-LCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMA 349

Query: 201 SPFVSSRSLMGAARRVFDEMP-ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                    M  A R+F E     + +SWT M++G+++ND          G  E VG+  
Sbjct: 350 ---------MLDALRLFKETGFLGNVVSWTAMISGFLQND----------GKEEAVGL-- 388

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                     E+K   +R   +EFTY+ +++A           +VHA +++T        
Sbjct: 389 --------FSEMKRKGVRP--NEFTYSVILTALPVIS----PSEVHAQVVKTNY------ 428

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
                                        ER      A+L AYV  G +DEA  +F  + 
Sbjct: 429 -----------------------------ERSSTVGTALLDAYVKLGKVDEAAKVFSGID 459

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA-LENGR 438
            +++++W+ M++G AQ G  E  +K+FS++   G KP ++ F+  +  CA   A +  G+
Sbjct: 460 NKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGK 519

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           Q H   + S  DSSL   +AL+TMYA+ G +E+A  VF      D VSWN+MI+   QHG
Sbjct: 520 QFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHG 579

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
              +A++++++M K  +  D +TF+ V +AC HAGLV+EG +YF+ M     I P ++H 
Sbjct: 580 QAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHN 639

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
           +  +DL  RAG+  +A  VID++P    + IW  +LA CR+H   +LG  AAE++  ++P
Sbjct: 640 SCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIP 699

Query: 619 HHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHP 678
             +  YVLLSNMYA  G W + A+VRKLM +R VKKEPG SWIEV NK + FL  D +HP
Sbjct: 700 EDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHP 759

Query: 679 EAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGG 738
               +Y  LE L   ++ LGY PDT +VL D++ + KE  L+ HSE+LA+AFGL+  P G
Sbjct: 760 LKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKG 819

Query: 739 ATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHF-RDGKCSCGDYW 790
           + + ++KNLR+CGDCH   K ++K+  REIVVRD  RFHHF  DG CSCGD+W
Sbjct: 820 SPLLIIKNLRVCGDCHVVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 134/532 (25%), Positives = 245/532 (46%), Gaps = 91/532 (17%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+   T+L+  Y    N K  R +F++  +K R+ V +  +I+ Y+ NS     + LF  
Sbjct: 131 DVSVGTSLVDTYMKGSNFKDGRNVFDE--MKERNVVTWTTLISGYARNSLNEEVLTLFMR 188

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEK---QCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           M+ +  +P++FTF + L  LA    EE    + +Q+H  VVK+G      V N+LI++Y+
Sbjct: 189 MQDEGTQPNSFTFAAALGVLA----EEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYL 244

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           KC +         +  AR +FD+   +  ++W +M++GY  N                 G
Sbjct: 245 KCGN---------VRKARILFDKTEVKSVVTWNSMISGYAAN-----------------G 278

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
           +   AL   Y      M +  ++L E ++ S+I  CAN    R  +Q+H  ++    K  
Sbjct: 279 LDLEALGMFY-----SMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVV----KYG 329

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLF 375
             F   +  AL+  Y KC  + +A  +F +     ++VSW A++S ++     +EA  L 
Sbjct: 330 FVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGL- 388

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
                                         FS+M+ +G +P ++ ++  +T+   +   E
Sbjct: 389 ------------------------------FSEMKRKGVRPNEFTYSVILTALPVISPSE 418

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
               +HAQ+V + Y+ S + G AL+  Y + G V+ A  VF+ + N D V+W+AM+A   
Sbjct: 419 ----VHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYA 474

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSAC-NHAGLVKEGRRYFETMHGPYGIPPG 554
           Q G    AI+++ ++ K G+ P+  TF ++L+ C      + +G+++    HG + I   
Sbjct: 475 QAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQF----HG-FAIKSR 529

Query: 555 EDH----YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
            D      +  + +  + G    A++V      K     W ++++G   HG 
Sbjct: 530 LDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVS-WNSMISGYAQHGQ 580



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 141/538 (26%), Positives = 237/538 (44%), Gaps = 106/538 (19%)

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
           ++S  +  A  +F+K+P + R++  Y +++  +S +     A  LF +++   ++ D   
Sbjct: 42  ASSSRLYYAHNLFDKSPDRDRES--YTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSI 99

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           F+SVL   A + +E     Q+HC  +K G     SV  +L+  Y+K   S F   R+   
Sbjct: 100 FSSVLKVSATLCDELFG-RQLHCQCIKFGFLDDVSVGTSLVDTYMK--GSNFKDGRN--- 153

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
               VFDEM ER+ ++WTT+++GY +N                            ++ E+
Sbjct: 154 ----VFDEMKERNVVTWTTLISGYARNS---------------------------LNEEV 182

Query: 272 KMLMLRIQLDE------FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
             L +R+Q DE      FT+ + +   A  G+   G QVH  +++     T    +PV+N
Sbjct: 183 LTLFMRMQ-DEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKT----IPVSN 237

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
           +L+ LY KCG V +AR +F++   + +V+WN+++S Y + GL  EA              
Sbjct: 238 SLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEA-------------- 283

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
                            L +F  MRL   +  + +FA  I  CA L  L    QLH  +V
Sbjct: 284 -----------------LGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVV 326

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNT---MPNVDSVSWNAMIAALGQHGNGAR 502
             G+    +   AL+  Y++C  +  A  +F     + NV  VSW AMI+   Q+     
Sbjct: 327 KYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNV--VSWTAMISGFLQNDGKEE 384

Query: 503 AIELYEQMLKEGILPDRITFLTVLSACN-------HAGLVKEGRRYFETMHGPYGIPPGE 555
           A+ L+ +M ++G+ P+  T+  +L+A         HA +VK       T+          
Sbjct: 385 AVGLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTA------- 437

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
                 +D   + GK  EA  V   +  K     W A+LAG    G  +  I+   +L
Sbjct: 438 -----LLDAYVKLGKVDEAAKVFSGIDNKDIVA-WSAMLAGYAQAGETEAAIKIFSEL 489



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 111/250 (44%), Gaps = 5/250 (2%)

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
           A +LF+   +R+  S+T ++ G +++G  +E  +LF  ++  G +     F+  +   A 
Sbjct: 50  AHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSAT 109

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
           L     GRQLH Q +  G+   +S G +L+  Y +    +    VF+ M   + V+W  +
Sbjct: 110 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTL 169

Query: 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
           I+   ++      + L+ +M  EG  P+  TF   L      G+   G +   T+    G
Sbjct: 170 ISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQ-VHTVVVKNG 228

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
           +          I+L  + G   +A+ + D    K S   W ++++G   +G   L ++A 
Sbjct: 229 LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK-SVVTWNSMISGYAANG---LDLEAL 284

Query: 611 EQLFQLMPHH 620
              + +  +H
Sbjct: 285 GMFYSMRLNH 294


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 269/756 (35%), Positives = 405/756 (53%), Gaps = 106/756 (14%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           VHA ++ +GF+    + N LI +Y KS  +  A  +FD                      
Sbjct: 227 VHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFD---------------------- 264

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
                       + +RD+V +N MI  Y+         ++F  MR   VK     F + L
Sbjct: 265 -----------SMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTAL 313

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVS-SPFVSSRSLMGAARR 215
             L     E     Q+HC VVK+G      +  AL+  Y KC S        S+  AA  
Sbjct: 314 K-LCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHN 372

Query: 216 VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLM 275
           V         ++WT M+ G+V+N+  + A +    MS                RE     
Sbjct: 373 V---------VTWTAMIGGFVQNNNNEKAVDLFCQMS----------------RE----- 402

Query: 276 LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG 335
             ++ + FTY++V++   +S L     Q+HA +++   +  P  +               
Sbjct: 403 -GVRPNHFTYSTVLAGKPSSLL----SQLHAQIIKAYYEKVPSVA--------------- 442

Query: 336 KVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQ 395
                                A+L AYV  G + E+  +F ++  +++++W+ M++GLAQ
Sbjct: 443 --------------------TALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQ 482

Query: 396 NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA-LENGRQLHAQLVHSGYDSSLS 454
               E+ +++F Q+  EG KP +Y F+  I +C+   A +E+G+Q+HA  V SG  ++L 
Sbjct: 483 TRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALC 542

Query: 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
             +AL+TMY++ G +E+A  VF      D VSWN+MI   GQHG+  +A+E+++ M  +G
Sbjct: 543 VSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQG 602

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
           +  D +TF+ VL+AC HAGLV+EG +YF  M   Y I    +HY+  +DL  RAG F +A
Sbjct: 603 LPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKA 662

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL 634
            D+I+ +PF  S  IW  LLA CR+H N++LG  AAE+L  L P+ A  YVLLSN++A  
Sbjct: 663 MDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVA 722

Query: 635 GRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEM 694
           G W++ A VRKLM +R VKKE GCSWIE+ N++  FL  D +HP +  VY  LE+L +++
Sbjct: 723 GNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKL 782

Query: 695 RKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCH 754
           + +GY PDT +V HD+E + KE  LS HSE+LA+A+GL+ LP GA +++ KNLRICGDCH
Sbjct: 783 KDMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCH 842

Query: 755 NAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           N  + +S +  R ++VRD  RFHHF+ G CSCG YW
Sbjct: 843 NVIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 148/568 (26%), Positives = 260/568 (45%), Gaps = 104/568 (18%)

Query: 59  IYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYN 118
           ++C+SLK  +           D+   T+L+  Y  +++ +  R +F++  +K  + V + 
Sbjct: 126 VHCQSLKSGFLE---------DVSVGTSLVDMYMKTEDFEDGRGIFDEMGIK--NVVSWT 174

Query: 119 AMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA--LIVEEEKQCMQMHCTV 176
           ++++ Y+ N      I L   M+ + V P+ FTF +VL ALA   I+E     +Q+H  +
Sbjct: 175 SLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIE---GGVQVHAMI 231

Query: 177 VKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV 236
           VK+G    T V NALI +Y+K           ++G A  VFD M  RD ++W  M+ GY 
Sbjct: 232 VKNGFEFTTFVCNALICMYLK---------SEMVGDAEAVFDSMVVRDSVTWNIMIGGYA 282

Query: 237 KNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSG 296
              +      +L+G                 HR   M +  ++L    + + +  C+   
Sbjct: 283 AIGF------YLEGFQ-------------MFHR---MRLAGVKLSRTVFCTALKLCSQQR 320

Query: 297 LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM-PERDLVSW 355
                KQ+H  ++    K   EF+  +  AL+  Y KC  V+EA  +F+      ++V+W
Sbjct: 321 ELNFTKQLHCGVV----KNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTW 376

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
                                          T MI G  QN   E+ + LF QM  EG +
Sbjct: 377 -------------------------------TAMIGGFVQNNNNEKAVDLFCQMSREGVR 405

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG-VVEAANC 474
           P  + ++   T  AG  +     QLHAQ++ + Y+   S   AL+  Y + G VVE+A  
Sbjct: 406 PNHFTYS---TVLAGKPS-SLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESAR- 460

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC-NHAG 533
           VF ++P  D V+W+AM+  L Q  +  +A+E++ Q++KEG+ P+  TF +V++AC + A 
Sbjct: 461 VFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAA 520

Query: 534 LVKEGRRYFETMHGPYGIPPGEDH----YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
            V+ G++   T      +  G+ +     +  + +  + G    A+ V      +     
Sbjct: 521 TVEHGKQIHAT-----AVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVS- 574

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           W +++ G   HG+     + A ++FQ+M
Sbjct: 575 WNSMITGYGQHGD----AKKALEVFQIM 598



 Score =  179 bits (453), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 136/507 (26%), Positives = 233/507 (45%), Gaps = 90/507 (17%)

Query: 98  KLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLS 157
           + A ++F++TPLK  D   YN ++  +S N++   A+ LF+D+    +  D  T +  L 
Sbjct: 55  RYAHQLFDETPLK--DISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALK 112

Query: 158 ALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVF 217
              ++ ++     Q+HC  +KSG     SV  +L+ +Y+K  +  F   R        +F
Sbjct: 113 VCGVLFDQVVG-RQVHCQSLKSGFLEDVSVGTSLVDMYMK--TEDFEDGRG-------IF 162

Query: 218 DEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLR 277
           DEM  ++ +SWT++++GY +N           G+++ V           +H   +M M  
Sbjct: 163 DEMGIKNVVSWTSLLSGYARN-----------GLNDEV-----------IHLINQMQMEG 200

Query: 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
           +  + FT+ +V+ A A+  +   G QVHA ++    K   EF+  V NAL+ +Y K   V
Sbjct: 201 VNPNGFTFATVLGALADESIIEGGVQVHAMIV----KNGFEFTTFVCNALICMYLKSEMV 256

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNG 397
            +A  +F+ M  RD V+WN ++  Y + G                               
Sbjct: 257 GDAEAVFDSMVVRDSVTWNIMIGGYAAIG------------------------------- 285

Query: 398 YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN 457
           +  EG ++F +MRL G K     F  A+  C+    L   +QLH  +V +GY+ +     
Sbjct: 286 FYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRT 345

Query: 458 ALITMYARCGVVEAANCVFNTMPNV-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
           AL+  Y++C  V+ A  +F+      + V+W AMI    Q+ N  +A++L+ QM +EG+ 
Sbjct: 346 ALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVR 405

Query: 517 PDRITFLTVLSACN-------HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
           P+  T+ TVL+          HA ++K    Y+E       +P         +D   + G
Sbjct: 406 PNHFTYSTVLAGKPSSLLSQLHAQIIKA---YYEK------VPSVA---TALLDAYVKTG 453

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAG 596
              E+  V  S+P K     W A+L G
Sbjct: 454 NVVESARVFYSIPAKDIVA-WSAMLTG 479



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 151/354 (42%), Gaps = 70/354 (19%)

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVA 258
           S PF+S  S    A ++FDE P +D   +  ++  + +N++  +A   F D  S  +GV 
Sbjct: 44  SLPFISLPSRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGV- 102

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                                 D  T +  +  C       +G+QVH   L++       
Sbjct: 103 ----------------------DGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLE--- 137

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
             + V  +LV +Y K     + R IF++M  +++VSW ++LS Y                
Sbjct: 138 -DVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGY---------------- 180

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
                          A+NG  +E + L +QM++EG  P  + FA  + + A    +E G 
Sbjct: 181 ---------------ARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGV 225

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           Q+HA +V +G++ +    NALI MY +  +V  A  VF++M   DSV+WN MI      G
Sbjct: 226 QVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIG 285

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACN-----------HAGLVKEGRRY 541
                 +++ +M   G+   R  F T L  C+           H G+VK G  +
Sbjct: 286 FYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEF 339



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 147/334 (44%), Gaps = 72/334 (21%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
           SSL   +HA +I + ++    +   L+D Y K+  +V +  +F  IP  DIVA       
Sbjct: 420 SSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVA------- 472

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
                                     ++AM+T  +   +   A+E+F  + ++ VKP+ +
Sbjct: 473 --------------------------WSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEY 506

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           TF+SV++A +      +   Q+H T VKSG      V +AL+++Y         S +  +
Sbjct: 507 TFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMY---------SKKGNI 557

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
            +A +VF    ERD +SW +M+TGY ++     A E    M +N G              
Sbjct: 558 ESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIM-QNQG-------------- 602

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA--KPTPEFSLPVNNALV 328
                  + LD+ T+  V++AC ++GL   G++    +++     K    +S      +V
Sbjct: 603 -------LPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYS-----CMV 650

Query: 329 TLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
            LY + G  ++A DI N MP       W  +L+A
Sbjct: 651 DLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAA 684


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 265/723 (36%), Positives = 390/723 (53%), Gaps = 94/723 (13%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+ A T L   Y+    V  AR++F++ P   RD V +N ++  YS N     A+E+ + 
Sbjct: 169 DLFAMTGLENMYAKCRQVNEARKVFDRMP--ERDLVSWNTIVAGYSQNGMARMALEMVKS 226

Query: 140 MRRDDVKPDNFTFTSVL---SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           M  +++KP   T  SVL   SAL LI   +    ++H   ++SG     ++  AL+ +Y 
Sbjct: 227 MCEENLKPSFITIVSVLPAVSALRLISVGK----EIHGYAMRSGFDSLVNISTALVDMYA 282

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           KC S                                        L+ AR+  DGM E   
Sbjct: 283 KCGS----------------------------------------LETARQLFDGMLERNV 302

Query: 257 VAWNALISGYVHRE---LKMLMLRIQLDEFTYTSVIS------ACANSGLFRLGKQVHAY 307
           V+WN++I  YV  E     ML+ +  LDE    + +S      ACA+ G    G+ +H  
Sbjct: 303 VSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIH-- 360

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367
             +   +   + ++ V N+L+++Y KC +V                              
Sbjct: 361 --KLSVELGLDRNVSVVNSLISMYCKCKEV------------------------------ 388

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
            D A S+F  ++ R L+SW  MI G AQNG   + L  FSQMR    KP  + +   IT+
Sbjct: 389 -DTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITA 447

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
            A L    + + +H  ++ S  D ++    AL+ MYA+CG +  A  +F+ M      +W
Sbjct: 448 IAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTW 507

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
           NAMI   G HG G  A+EL+E+M K  I P+ +TFL+V+SAC+H+GLV+ G + F  M  
Sbjct: 508 NAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKE 567

Query: 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
            Y I    DHY   +DLL RAG+ +EA D I  +P KP+  ++ A+L  C+IH N++   
Sbjct: 568 NYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAE 627

Query: 608 QAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKV 667
           +AAE+LF+L P   G +VLL+N+Y     W+   +VR  M  +G++K PGCS +E+ N+V
Sbjct: 628 KAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEV 687

Query: 668 HVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLA 727
           H F    TAHP+++ +Y +LE+L+  +++ GYVPDT  VL  +E+D KE  LSTHSEKLA
Sbjct: 688 HSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLA 746

Query: 728 VAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCG 787
           ++FGL+    G T+ V KNLR+C DCHNA K++S V GREIVVRD +RFHHF++G CSCG
Sbjct: 747 ISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCG 806

Query: 788 DYW 790
           DYW
Sbjct: 807 DYW 809



 Score =  208 bits (529), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 158/567 (27%), Positives = 256/567 (45%), Gaps = 93/567 (16%)

Query: 61  CKSLK-------LVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
           C SLK       LV+   L+ E        +T L++ +    +V  A  +F   P+  + 
Sbjct: 47  CSSLKELRQILPLVFKNGLYQEH-----FFQTKLVSLFCRYGSVDEAARVFE--PIDSKL 99

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMH 173
            V Y+ M+  ++  S+   A++ F  MR DDV+P  + FT +L        E +   ++H
Sbjct: 100 NVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCG-DEAELRVGKEIH 158

Query: 174 CTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMT 233
             +VKSG  L    +  L ++Y KC           +  AR+VFD MPERD +SW T++ 
Sbjct: 159 GLLVKSGFSLDLFAMTGLENMYAKCRQ---------VNEARKVFDRMPERDLVSWNTIVA 209

Query: 234 GYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACA 293
           GY +N     A E +  M E                        ++    T  SV+ A +
Sbjct: 210 GYSQNGMARMALEMVKSMCEE----------------------NLKPSFITIVSVLPAVS 247

Query: 294 NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV 353
              L  +GK++H Y +R+         + ++ ALV +Y KCG +  AR +F+ M ER++V
Sbjct: 248 ALRLISVGKEIHGYAMRSGFDSL----VNISTALVDMYAKCGSLETARQLFDGMLERNVV 303

Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
           SWN+++ AYV                               QN   +E + +F +M  EG
Sbjct: 304 SWNSMIDAYV-------------------------------QNENPKEAMLIFQKMLDEG 332

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473
            KP D +  GA+ +CA LG LE GR +H   V  G D ++S  N+LI+MY +C  V+ A 
Sbjct: 333 VKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAA 392

Query: 474 CVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533
            +F  + +   VSWNAMI    Q+G    A+  + QM    + PD  T+++V++A     
Sbjct: 393 SMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELS 452

Query: 534 LVKEGRRYFETMHGPYGIPPGEDHY---ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590
           +    +     +HG       + +       +D+  + G    A+ + D +  +     W
Sbjct: 453 ITHHAK----WIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMS-ERHVTTW 507

Query: 591 EALLAGCRIHGNIDLGIQAAEQLFQLM 617
            A++ G   HG    G +AA +LF+ M
Sbjct: 508 NAMIDGYGTHG---FG-KAALELFEEM 530



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 171/384 (44%), Gaps = 75/384 (19%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           S+ + +H + + SGF    +I   L+D+Y K   L  AR LFD + + ++V+  ++I AY
Sbjct: 253 SVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAY 312

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
             ++N K                                  A+ +F+ M  + VKP + +
Sbjct: 313 VQNENPK---------------------------------EAMLIFQKMLDEGVKPTDVS 339

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
               L A A + + E+    +H   V+ G     SV+N+LIS+Y KC           + 
Sbjct: 340 VMGALHACADLGDLERGRF-IHKLSVELGLDRNVSVVNSLISMYCKCKE---------VD 389

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVAWNALISGYVHRE 270
            A  +F ++  R  +SW  M+ G+ +N   +DA   F    S  V               
Sbjct: 390 TAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTV--------------- 434

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
                   + D FTY SVI+A A   +    K +H  ++R+      + ++ V  ALV +
Sbjct: 435 --------KPDTFTYVSVITAIAELSITHHAKWIHGVVMRS----CLDKNVFVTTALVDM 482

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR----ERNLLSW 386
           Y KCG +  AR IF+ M ER + +WNA++  Y + G    A  LFE M+    + N +++
Sbjct: 483 YAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTF 542

Query: 387 TVMISGLAQNGYGEEGLKLFSQMR 410
             +IS  + +G  E GLK F  M+
Sbjct: 543 LSVISACSHSGLVEAGLKCFYMMK 566



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 122/260 (46%), Gaps = 13/260 (5%)

Query: 330 LYWKCGKVNEARDIFNQMPERDLVS----WNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
           L  +C  + E R I   + +  L         ++S +   G +DEA  +FE +  +  + 
Sbjct: 43  LLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVL 102

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
           +  M+ G A+    ++ L+ F +MR +  +P  Y F   +  C     L  G+++H  LV
Sbjct: 103 YHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLV 162

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIE 505
            SG+   L A   L  MYA+C  V  A  VF+ MP  D VSWN ++A   Q+G    A+E
Sbjct: 163 KSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALE 222

Query: 506 LYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR----F 561
           + + M +E + P  IT ++VL A +   L+  G+     +HG Y +  G D         
Sbjct: 223 MVKSMCEENLKPSFITIVSVLPAVSALRLISVGKE----IHG-YAMRSGFDSLVNISTAL 277

Query: 562 IDLLCRAGKFSEAKDVIDSL 581
           +D+  + G    A+ + D +
Sbjct: 278 VDMYAKCGSLETARQLFDGM 297


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 259/714 (36%), Positives = 394/714 (55%), Gaps = 40/714 (5%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + D+    +LI  Y     +   R +F+K  +  R+ V + ++I  Y+       A+ LF
Sbjct: 171 ERDMFVENSLIHFYGECGEIDCMRRVFDK--MSERNVVSWTSLIGGYAKRGCYKEAVSLF 228

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL-NALISVYV 196
            +M    ++P++ T   V+SA A +  ++ Q  +  CT +        +++ NAL+ +Y+
Sbjct: 229 FEMVEVGIRPNSVTMVGVISACAKL--QDLQLGEQVCTCIGELELEVNALMVNALVDMYM 286

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           KC           +  AR++FDE  +++ + + T+M+ YV+      ARE L  + E   
Sbjct: 287 KC---------GAIDKARKIFDECVDKNLVLYNTIMSNYVRQGL---AREVLAVLGE--- 331

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
                           ML    + D  T  S +SAC+       GK  H Y+LR   +  
Sbjct: 332 ----------------MLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGW 375

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
                 V NA++ +Y KCGK   A  +F++M  +  VSWN++++ +V  G ++ A  +F 
Sbjct: 376 DN----VCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFS 431

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
           AM + +L+SW  MI  L Q    +E ++LF  M+ EG         G  ++C  LGAL+ 
Sbjct: 432 AMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDL 491

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
            + +H  +        +  G AL+ M+ARCG  ++A  VFN M   D  +W A I A+  
Sbjct: 492 AKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAM 551

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
            GNG  AIEL+++ML++GI PD + F+ +L+A +H GLV++G   F +M   YGI P   
Sbjct: 552 EGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAV 611

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           HY   +DLL RAG  SEA  +I+S+  +P+  IW +LLA CR+H N+D+   AAE++ +L
Sbjct: 612 HYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISEL 671

Query: 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTA 676
            P   G +VLLSN+YA+ GRWDD A+VR  ++++G  K PG S IE++ K+  F   D +
Sbjct: 672 DPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGDES 731

Query: 677 HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLP 736
           HPE   +   L+++   +R +GYVPD   VL D+   +KEY LS HSEKLA+AF L+   
Sbjct: 732 HPEMTHIEPMLKEICCRLRDIGYVPDLTNVLLDVNEKEKEYLLSRHSEKLAIAFALISTG 791

Query: 737 GGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            G  +RV KNLRIC DCH+  K +SK   REI+VRD  RFH F+ G CSCGDYW
Sbjct: 792 QGMPIRVAKNLRICSDCHSFAKLVSKSYSREIIVRDNNRFHFFQQGFCSCGDYW 845



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 154/580 (26%), Positives = 246/580 (42%), Gaps = 126/580 (21%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           ++++  T +  + + +  + A E+F +    M     ++++I  +S    G+ AI +FR 
Sbjct: 70  NLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFSSLIRGFSACGLGYKAIVVFRQ 129

Query: 140 MRRDDVKPDNFTFTSVLSAL---ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           +      PDNFTF  VLSA    A + E      Q+H  +VK G      V N+LI  Y 
Sbjct: 130 LMCMGAVPDNFTFPFVLSACTKSAALTEG----FQVHGAIVKMGFERDMFVENSLIHFYG 185

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND-YLDAAREFLDGMSENV 255
           +C           +   RRVFD+M ER+ +SWT+++ GY K   Y +A   F +      
Sbjct: 186 EC---------GEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFE------ 230

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                            M+ + I+ +  T   VISACA     +LG+QV   +       
Sbjct: 231 -----------------MVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCI------- 266

Query: 316 TPEFSLPVN----NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
             E  L VN    NALV +Y KCG +++AR IF++  +++LV +N I+S YV  GL  E 
Sbjct: 267 -GELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREV 325

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
                                          L +  +M   G +P       A+++C+ L
Sbjct: 326 -------------------------------LAVLGEMLKHGPRPDRITMLSAVSACSEL 354

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV----------------------- 468
             +  G+  H  ++ +G +   +  NA+I MY +CG                        
Sbjct: 355 DDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLI 414

Query: 469 --------VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI 520
                   +E+A  +F+ MP+ D VSWN MI AL Q      AIEL+  M  EGI  D++
Sbjct: 415 AGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKV 474

Query: 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY-----ARFIDLLCRAGKFSEAK 575
           T + V SAC + G +   +     +HG   I   + H+        +D+  R G    A 
Sbjct: 475 TMVGVASACGYLGALDLAK----WIHGY--IKKKDIHFDMHLGTALVDMFARCGDPQSAM 528

Query: 576 DVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
            V + +  K     W A +    + GN    I+  +++ Q
Sbjct: 529 QVFNKM-VKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQ 567



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 119/494 (24%), Positives = 206/494 (41%), Gaps = 88/494 (17%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA--- 90
           A S+   M+  G +P    +  +I    K   L     +   I + ++     ++ A   
Sbjct: 224 AVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVD 283

Query: 91  -YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
            Y     +  AR++F++   K  + V YN +++ Y         + +  +M +   +PD 
Sbjct: 284 MYMKCGAIDKARKIFDECVDK--NLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDR 341

Query: 150 FTFTSVLSALALI--VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSR 207
            T  S +SA + +  V   K C   H  V+++G   + +V NA+I++Y+KC         
Sbjct: 342 ITMLSAVSACSELDDVSCGKWC---HGYVLRNGLEGWDNVCNAIINMYMKCGKQEM---- 394

Query: 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV 267
                A RVFD M  +  +SW +++ G+V+N  +++A +    M ++  V+WN +I   V
Sbjct: 395 -----ACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALV 449

Query: 268 HR-------ELKMLMLR--IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                    EL  +M    I  D+ T   V SAC   G   L K +H Y+     K    
Sbjct: 450 QESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYI----KKKDIH 505

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
           F + +  ALV ++ +CG    A  +FN+M +RD+ +W A + A                 
Sbjct: 506 FDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGA----------------- 548

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
                         +A  G G   ++LF +M  +G KP    F   +T+ +  G +E G 
Sbjct: 549 --------------MAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGW 594

Query: 439 QLH----------AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM---PNVDSV 485
            +            Q VH G          ++ +  R G++  A  + N+M   PN   V
Sbjct: 595 HIFRSMKDIYGIAPQAVHYG---------CMVDLLGRAGLLSEALSLINSMQMEPN--DV 643

Query: 486 SWNAMIAALGQHGN 499
            W +++AA   H N
Sbjct: 644 IWGSLLAACRVHKN 657



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 169/366 (46%), Gaps = 52/366 (14%)

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           G+ + A++   V R+L M M  +  D FT+  V+SAC  S     G QVH  ++    K 
Sbjct: 118 GLGYKAIV---VFRQL-MCMGAVP-DNFTFPFVLSACTKSAALTEGFQVHGAIV----KM 168

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
             E  + V N+L+  Y +CG+++  R +F++M ER++VSW +++  Y   G   EA SLF
Sbjct: 169 GFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLF 228

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
             M E                                G +P      G I++CA L  L+
Sbjct: 229 FEMVEV-------------------------------GIRPNSVTMVGVISACAKLQDLQ 257

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            G Q+   +     + +    NAL+ MY +CG ++ A  +F+   + + V +N +++   
Sbjct: 258 LGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYV 317

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY---GIP 552
           + G     + +  +MLK G  PDRIT L+ +SAC+    V  G+      HG     G+ 
Sbjct: 318 RQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGK----WCHGYVLRNGLE 373

Query: 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
             ++     I++  + GK   A  V D +  K     W +L+AG   +G+    +++A +
Sbjct: 374 GWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVS-WNSLIAGFVRNGD----MESAWK 428

Query: 613 LFQLMP 618
           +F  MP
Sbjct: 429 IFSAMP 434



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 128/289 (44%), Gaps = 24/289 (8%)

Query: 313 AKPTPEFSLPVNNALVTL----------YWKCGKVNEARDIFNQMPERDL----VSWNAI 358
           A PT   +LP  N L  L          + KC  + E + + +Q+ +  L    +S   +
Sbjct: 13  ATPT-SVALPNQNELKILTKHRSSPTGSFKKCKTMTELKQLHSQITKNGLNHHPLSLTNL 71

Query: 359 LSAYVSAGLIDE---AKSLFEAMRERNLLSWT-----VMISGLAQNGYGEEGLKLFSQMR 410
           +S+    G  +    A+   E   E N +  T      +I G +  G G + + +F Q+ 
Sbjct: 72  ISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFSSLIRGFSACGLGYKAIVVFRQLM 131

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
             G  P ++ F   +++C    AL  G Q+H  +V  G++  +   N+LI  Y  CG ++
Sbjct: 132 CMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEID 191

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
               VF+ M   + VSW ++I    + G    A+ L+ +M++ GI P+ +T + V+SAC 
Sbjct: 192 CMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACA 251

Query: 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579
               ++ G +   T  G   +          +D+  + G   +A+ + D
Sbjct: 252 KLQDLQLGEQVC-TCIGELELEVNALMVNALVDMYMKCGAIDKARKIFD 299



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 138/331 (41%), Gaps = 38/331 (11%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           S  +  H +++ +G +  +++ N +I++Y K  K   A  +FD +     V+  +LIA +
Sbjct: 358 SCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGF 417

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
             + +++ A ++F+  P    D V +N MI A    S    AIELFR M+ + +  D  T
Sbjct: 418 VRNGDMESAWKIFSAMPDS--DLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVT 475

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
              V SA   +   +     +H  + K        +  AL+ ++ +C   P         
Sbjct: 476 MVGVASACGYLGALD-LAKWIHGYIKKKDIHFDMHLGTALVDMFARC-GDP--------Q 525

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
           +A +VF++M +RD  +WT  +           A E  D                      
Sbjct: 526 SAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFD---------------------- 563

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
           +ML   I+ D   + ++++A ++ GL   G  +   +                  +V L 
Sbjct: 564 EMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHY---GCMVDLL 620

Query: 332 WKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
            + G ++EA  + N M  E + V W ++L+A
Sbjct: 621 GRAGLLSEALSLINSMQMEPNDVIWGSLLAA 651


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 276/771 (35%), Positives = 425/771 (55%), Gaps = 94/771 (12%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLK---LVYARTLFDEIPQPDIVARTTLIAAY 91
           R +HA MI +G     + ++RL++    S     L YA ++F+ I +P+++         
Sbjct: 19  RIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLL--------- 69

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                                    +N M   ++ +S+  +AI+L+  M    + P+++T
Sbjct: 70  ------------------------IWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYT 105

Query: 152 FTSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           F  +L + A L V +E Q  Q+H  V+K G  L   V  +LIS+YVK             
Sbjct: 106 FPFLLKSCAKLKVSKEGQ--QIHGHVLKLGYELDLYVHTSLISMYVK---------NGRW 154

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV--- 267
             A +VFD    RD +S+T ++TGY    Y+++A++  D +     V+WNA+ISGY    
Sbjct: 155 KDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTG 214

Query: 268 -HREL-----KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
            ++E      +M+   ++ DE T  +V+SACA SG  +LG+QVH+++           +L
Sbjct: 215 NNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGS----NL 270

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
            + NAL+ LY KCG+V                               + A  LF+ +  +
Sbjct: 271 KIVNALIDLYSKCGEV-------------------------------ETACGLFQGLSNK 299

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
           +++SW  MI G       +E L LF +M   G  P D      + +CA LGA++ GR +H
Sbjct: 300 DVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIH 359

Query: 442 AQLVH--SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
             +     G  ++ S   +LI MYA+CG +EAA+ VFN+M +    + NAMI     HG 
Sbjct: 360 VYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGR 419

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA 559
              A +++ +M K GI PD ITF+ +LSAC+H+G++  GRR F +M   Y I P  +HY 
Sbjct: 420 ANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYG 479

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
             IDLL   G F EA+++I+++  +P   IW +LL  C++HGN++LG   A++L ++ P 
Sbjct: 480 CMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPE 539

Query: 620 HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPE 679
           + G+YVLLSN+YA  GRW++ A +R L+ D+G+KK PGCS IE+D+ VH F++ D  HP 
Sbjct: 540 NPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPR 599

Query: 680 AQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGA 739
            + +Y  LE++ + + + G+VPDT  VL +ME + K+ AL  HSEKLA+AFGL+    G 
Sbjct: 600 NREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEFKQGALRHHSEKLAIAFGLISTKPGT 659

Query: 740 TVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            + ++KNLR+C +CH A K +SK+  REI+ RD  RFHHFRDG CSC DYW
Sbjct: 660 KLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 133/503 (26%), Positives = 222/503 (44%), Gaps = 69/503 (13%)

Query: 12  LANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYART 71
           L N Y     L        S   + +H H++  G++   ++   LI +Y K+ +   A  
Sbjct: 100 LPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHK 159

Query: 72  LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           +FD     D+V+ T LI  Y++   ++ A++MF++ P+K  D V +NA+I+ Y+   N  
Sbjct: 160 VFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVK--DVVSWNAIISGYADTGNNK 217

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
            A++LF++M + +VKPD  T  +V+SA A      +   Q+H  +   G G    ++NAL
Sbjct: 218 EALDLFKEMMKTNVKPDESTMVTVVSACAQ-SGSIQLGRQVHSWIDDHGLGSNLKIVNAL 276

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           I +Y KC           +  A  +F  +  +D +SW TM+ GY    +L+  +E L   
Sbjct: 277 IDLYSKC---------GEVETACGLFQGLSNKDVISWNTMIGGYT---HLNLYKEALLLF 324

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
            E        L SG    ++ ML            S++ ACA  G    G+ +H Y+ + 
Sbjct: 325 QE-------MLRSGENPNDVTML------------SILPACAQLGAIDFGRWIHVYIDKR 365

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
               T   SL    +L+ +Y KCG +  A  +FN M  R L + NA              
Sbjct: 366 IKGVTNASSL--RTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNA-------------- 409

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
                            MI G A +G       +FS+MR  G +P D  F G +++C+  
Sbjct: 410 -----------------MIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHS 452

Query: 432 GALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNA 489
           G L+ GR++   +  +      L     +I +    G+ + A  + NTM    D V W +
Sbjct: 453 GMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCS 512

Query: 490 MIAALGQHGNGARAIELYEQMLK 512
           ++ A   HGN        ++++K
Sbjct: 513 LLKACKMHGNVELGESFAQKLIK 535



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 136/311 (43%), Gaps = 40/311 (12%)

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE-------AKSLFE 376
           N+  ++L   C  +   R I  QM +  L + N  LS  +   ++         A S+FE
Sbjct: 2   NHPSLSLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFE 61

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
            ++E NLL W  M  G A +      +KL+  M   G  P  Y F   + SCA L   + 
Sbjct: 62  TIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKE 121

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARC------------------------------ 466
           G+Q+H  ++  GY+  L    +LI+MY +                               
Sbjct: 122 GQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYAS 181

Query: 467 -GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTV 525
            G +E+A  +F+ +P  D VSWNA+I+     GN   A++L+++M+K  + PD  T +TV
Sbjct: 182 RGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTV 241

Query: 526 LSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP 585
           +SAC  +G ++ GR+    +   +G+          IDL  + G+   A  +   L  K 
Sbjct: 242 VSACAQSGSIQLGRQVHSWI-DDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKD 300

Query: 586 SAPIWEALLAG 596
               W  ++ G
Sbjct: 301 VIS-WNTMIGG 310


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 234/625 (37%), Positives = 371/625 (59%), Gaps = 53/625 (8%)

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY----VH 268
           A+ +FD+M +RD  SW  +++ Y K+  +   +   D M     V++N  I+G+      
Sbjct: 77  AQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCP 136

Query: 269 RELKMLMLRIQLD-----EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF--SL 321
           +E   L  R+Q +     E+T  S+++A A     R GKQ+H  ++         F  ++
Sbjct: 137 QESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSII------VRNFLGNV 190

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWN------------------------- 356
            + NAL  +Y KCG++ +AR +F+ + +++LVSWN                         
Sbjct: 191 FIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLS 250

Query: 357 ----------AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
                      I++AY   G +DEA+ +F   +E++++ WT M+ G A+NG  E+ L LF
Sbjct: 251 GHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLF 310

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
           ++M LE  +P  Y  +  ++SCA L +L +G+ +H + + +G +++L   +ALI MY++C
Sbjct: 311 NEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKC 370

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G ++ A  VFN MP  + VSWNAMI    Q+G+   A+EL+E ML++   PD +TF+ +L
Sbjct: 371 GFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGIL 430

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
           SAC H   +++G+ YF+++   +G+ P  DHYA  ++LL R G+  +A  +I ++   P 
Sbjct: 431 SACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPD 490

Query: 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKL 646
             IW  LL+ C   G+I     AA  LF+L P  A  Y++LSNMYA++GRW D A VR L
Sbjct: 491 FLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNL 550

Query: 647 MRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFV 706
           M+ + VKK  G SWIE+DN+VH F  +D  HPE++ +Y+ L  L+ ++++ G+ P+T  V
Sbjct: 551 MKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLV 610

Query: 707 LHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT-VRVLKNLRICGDCHNAFKFMSKVVG 765
           LHD+  D+K  ++  HSEKLA+AFGL+K P G + +R++KN+RIC DCH   KF S+++G
Sbjct: 611 LHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIG 670

Query: 766 REIVVRDGKRFHHFRDGKCSCGDYW 790
           R+I++RD  RFHHF  GKCSC D W
Sbjct: 671 RQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 147/554 (26%), Positives = 255/554 (46%), Gaps = 100/554 (18%)

Query: 1   MMMKNADYI--RTLANRYA-SQLQL-CDPRNPITSSLARSVHAHMISSGFKPREHII-NR 55
           M+ ++ D +  R+ A   A +QL L C   N I    A+ + +HM    F+P +  + N+
Sbjct: 6   MLRQSVDLLCSRSTATSEAYTQLVLECVRTNEINQ--AKRLQSHMEHHLFQPTDSFLHNQ 63

Query: 56  LIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTV 115
           L+ +Y K  KL  A+ LFD++ + DI +   L++AY+ S +++  +  F++ P   RD+V
Sbjct: 64  LLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPF--RDSV 121

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
            YN  I  +S NS    ++ELF+ M+R+  +P  +T  S+L+A A +  + +   Q+H +
Sbjct: 122 SYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQL-SDLRYGKQIHGS 180

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
           ++         + NAL  +Y KC           +  AR +FD + +++ +SW  M++GY
Sbjct: 181 IIVRNFLGNVFIWNALTDMYAKCGE---------IEQARWLFDCLTKKNLVSWNLMISGY 231

Query: 236 VKNDY-----------------------------------LDAAREFLDGMSENVGVAWN 260
            KN                                     +D AR       E   V W 
Sbjct: 232 AKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWT 291

Query: 261 ALISGYVH--REL-------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
           A++ GY    RE        +ML+  I+ D +T +SV+S+CA       G+ VH   +  
Sbjct: 292 AMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILA 351

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
                   +L V++AL+ +Y KCG +++AR +FN MP R++VSWNA              
Sbjct: 352 GLNN----NLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNA-------------- 393

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
                            MI G AQNG+ ++ L+LF  M  + FKP +  F G +++C   
Sbjct: 394 -----------------MIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHC 436

Query: 432 GALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNA 489
             +E G++    + +  G   +L     ++ +  R G +E A  +   M  + D + W+ 
Sbjct: 437 NWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWST 496

Query: 490 MIAALGQHGNGARA 503
           +++     G+   A
Sbjct: 497 LLSICSTKGDIVNA 510



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 87/258 (33%), Positives = 148/258 (57%), Gaps = 3/258 (1%)

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           YT ++  C  +      K++ +++     +PT  F   ++N L+ LY K GK+ +A+++F
Sbjct: 25  YTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSF---LHNQLLHLYAKFGKLRDAQNLF 81

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           ++M +RD+ SWNA+LSAY  +G I   K+ F+ M  R+ +S+   I+G + N   +E L+
Sbjct: 82  DKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLE 141

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           LF +M+ EGF+P +Y     + + A L  L  G+Q+H  ++   +  ++   NAL  MYA
Sbjct: 142 LFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYA 201

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           +CG +E A  +F+ +   + VSWN MI+   ++G   + I L  QM   G +PD++T  T
Sbjct: 202 KCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMST 261

Query: 525 VLSACNHAGLVKEGRRYF 542
           +++A    G V E RR F
Sbjct: 262 IIAAYCQCGRVDEARRVF 279


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 282/837 (33%), Positives = 436/837 (52%), Gaps = 140/837 (16%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y+S +Q C   N       +S+H  MIS+G+ P  +++ +++ +Y +S  L         
Sbjct: 74  YSSLIQDCIDSNSFQR--GKSIHTQMISNGYNPDAYLMTKILMLYARSGCL--------- 122

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
                              D++  AR++F + P   R+   +N MI AY+   +   A  
Sbjct: 123 -------------------DDLCYARKLFEEMP--ERNLTAWNTMILAYARVDDYMEAWG 161

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           +F  M +  V PDNFTF S L     +   +    Q+H  ++  G    T V NALI +Y
Sbjct: 162 IFDRMLKIGVCPDNFTFASALRVCGALRSRDGG-KQVHSKLIACGFKGDTFVGNALIDMY 220

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            KC             +  +VFDEM ER++                              
Sbjct: 221 AKCDDEE---------SCLKVFDEMGERNQ------------------------------ 241

Query: 256 GVAWNALIS-----GYVHRELKMLMLR-------IQLDEFTYTSVISACANSGLFRLGKQ 303
            V WN++IS     G+ +  L +L LR       IQ D+FT+T++++ CAN      G+Q
Sbjct: 242 -VTWNSIISAEAQFGHFNDAL-VLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQ 299

Query: 304 VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV 363
           +HA+L+R         ++ V   LV +Y +CG++N A++IFN+M ER+  SWN+++  Y 
Sbjct: 300 IHAHLIRANITK----NIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQ 355

Query: 364 SAGLIDEAKSLFEAMR----ERNLLSWTVMISGLAQNGYGEEGLKLFS-----QMRLEG- 413
             G   EA  LF+ M+    + +  S + M+S        ++G +L +      M  EG 
Sbjct: 356 QNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGI 415

Query: 414 --------FKPC---DYAFA----------------GAITSCAGLGALENGRQLHAQLVH 446
                   +  C   DYA+                   +   A  G  +       +++ 
Sbjct: 416 LQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLE 475

Query: 447 SG--YD--------SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           S   YD        + L    AL+ MY++CG +  A  VF+ M   + VSWNAMI+   +
Sbjct: 476 SDIEYDVLTMVTIVNLLVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSK 535

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
           HG    A+ LYE+M K+G+ P+ +TFL +LSAC+H GLV+EG R F +M   Y I    +
Sbjct: 536 HGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAE 595

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           HY   +DLL RAG+  +AK+ ++ +P +P    W ALL  CR+H ++D+G  AA++LF+L
Sbjct: 596 HYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFEL 655

Query: 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTA 676
            P + G YV++SN+YA  GRW +   +R++M+ +GVKK+PG SWIE+++++ +F      
Sbjct: 656 DPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKT 715

Query: 677 HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLH---DMESDQKEYALSTHSEKLAVAFGLM 733
           HP+ + +Y  L  L L+ + LGY+PDT F+L    D++ +++E  L  HSE+LA++ GL+
Sbjct: 716 HPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLI 775

Query: 734 KLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            LP  +T+RV KNLRICGDCH A KF+SK+ GR I+ RD  RFHHF +GKCSCGDYW
Sbjct: 776 SLPKKSTIRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 832



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 157/343 (45%), Gaps = 46/343 (13%)

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
           ++   Y+S+I  C +S  F+ GK +H  ++     P                        
Sbjct: 69  VNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNP------------------------ 104

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDE---AKSLFEAMRERNLLSWTVMISGLAQN 396
                      D      IL  Y  +G +D+   A+ LFE M ERNL +W  MI   A+ 
Sbjct: 105 -----------DAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARV 153

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
               E   +F +M   G  P ++ FA A+  C  L + + G+Q+H++L+  G+      G
Sbjct: 154 DDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVG 213

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML--KEG 514
           NALI MYA+C   E+   VF+ M   + V+WN++I+A  Q G+   A+ L+ +M   ++G
Sbjct: 214 NALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDG 273

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
           I PD+ TF T+L+ C +     +GR+    +     I          + +    G+ + A
Sbjct: 274 IQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRA-NITKNIIVETELVHMYSECGRLNYA 332

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           K++ + +  + +A  W +++ G + +G      Q A +LF+ M
Sbjct: 333 KEIFNRMA-ERNAYSWNSMIEGYQQNGE----TQEALRLFKQM 370



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 100/475 (21%), Positives = 196/475 (41%), Gaps = 110/475 (23%)

Query: 2   MMKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYC 61
           M ++ D I+     + + L LC   N    +  R +HAH+I +       +   L+ +Y 
Sbjct: 267 MQESEDGIQPDQFTFTTLLTLC--ANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYS 324

Query: 62  KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMI 121
           +  +L YA+ +F+ + +                                 R+   +N+MI
Sbjct: 325 ECGRLNYAKEIFNRMAE---------------------------------RNAYSWNSMI 351

Query: 122 TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGT 181
             Y  N     A+ LF+ M+ + +KPD F+ +S+LS+   + + +K   ++H  +V++  
Sbjct: 352 EGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKG-RELHNFIVRNTM 410

Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS--WTTMMTGYVK-- 237
                +   L+ +Y KC S         M  A +V+D+  ++D  +  W +++ GY    
Sbjct: 411 EEEGILQVVLVDMYAKCGS---------MDYAWKVYDQTIKKDRNTALWNSILAGYANKG 461

Query: 238 ------NDYLD-------------------------------------AAREFLDGMSEN 254
                 N +L+                                      AR   D M+  
Sbjct: 462 LKKESFNHFLEMLESDIEYDVLTMVTIVNLLVLETALVDMYSKCGAITKARTVFDNMNGK 521

Query: 255 VGVAWNALISGYVHR--ELKMLMLRIQL-------DEFTYTSVISACANSGLFRLGKQVH 305
             V+WNA+ISGY       + L+L  ++       +E T+ +++SAC+++GL   G ++ 
Sbjct: 522 NIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIF 581

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVS 364
             +   +     E        +V L  + G++ +A++   +MP E ++ +W A+L A   
Sbjct: 582 TSM---QEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRV 638

Query: 365 AGLID----EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
              +D     A+ LFE +  +N   + +M +  A  G  +E   +   M+++G K
Sbjct: 639 HKDMDMGRLAAQRLFE-LDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVK 692


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 277/770 (35%), Positives = 396/770 (51%), Gaps = 107/770 (13%)

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
           A   + LAR++F++ P    D   YNA+I AYS     HAAI+L+R M    V P+ +TF
Sbjct: 45  ARGQLALARQVFDRIPAP--DARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTF 102

Query: 153 TSVLSALALIVEE-EKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             VL A + + +    + +  H   V   T LF S   ALI +Y++C            G
Sbjct: 103 PFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVS--TALIDLYIRCAR---------FG 151

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A  VF +MP RD ++W  M+ GY  +     A   L  M +  G+  NA          
Sbjct: 152 PAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNA---------- 201

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                       T  S++   A  G    G  VHAY LR       E  L +  AL+ +Y
Sbjct: 202 -----------STLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVL-IGTALLDMY 249

Query: 332 WK-------------------------------CGKVNEARDIFNQM------------- 347
            K                               C ++ EA ++F  M             
Sbjct: 250 AKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSV 309

Query: 348 ---------------------------PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
                                         DL + N++LS Y  AGLI+EA  LF+ +  
Sbjct: 310 ASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAI 369

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
           ++ +S+  ++SG  QNG  EE   +F +M+    +P        I +C+ L AL++GR  
Sbjct: 370 KDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCS 429

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           H  ++  G     S  N+LI MYA+CG ++ +  VF+ MP  D VSWN MIA  G HG G
Sbjct: 430 HGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLG 489

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
             A  L+  M  +G  PD +TF+ +++AC+H+GLV EG+ +F+TM   YGI P  +HY  
Sbjct: 490 KEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYIC 549

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
            +DLL R G   EA   I S+P K    +W ALL  CRIH NIDLG Q +  + +L P  
Sbjct: 550 MVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEG 609

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEA 680
            G +VLLSN+++  GR+D+AA VR + + +G KK PGCSWIE++  +H F+  D +HP +
Sbjct: 610 TGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCS 669

Query: 681 QAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT 740
             +Y  L+ ++++++KLGY  DT FVL D+E ++KE AL  HSEKLA+AFG++ L    T
Sbjct: 670 PDIYHELDNILIDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKT 729

Query: 741 VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           + V KNLR+CGDCH A K+M+ V  R I+VRD  RFHHF++G+CSCGD+W
Sbjct: 730 IFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDANRFHHFKNGQCSCGDFW 779



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 159/387 (41%), Gaps = 49/387 (12%)

Query: 223 RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE---------LKM 273
           +D   W   +  ++    L  AR+  D +      A+NALI  Y  R            M
Sbjct: 31  KDNKEWQQELEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSM 90

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
           L  R+  +++T+  V+ AC+       G+ +HA+     A       L V+ AL+ LY +
Sbjct: 91  LYFRVPPNKYTFPFVLKACSALADLCAGRTIHAH----AAAVGLHTDLFVSTALIDLYIR 146

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
           C +   A ++F +MP RD+V+WNA+L+ Y + G+   A +    M++R            
Sbjct: 147 CARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRG----------- 195

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS- 452
                              G +P        +   A  GAL  G  +HA  + +  D + 
Sbjct: 196 -------------------GLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNE 236

Query: 453 --LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
             +  G AL+ MYA+C  +  A  VF+ M   + V+W+A+I           A  L++ M
Sbjct: 237 EQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDM 296

Query: 511 LKEGI-LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
           L EG+      +  + L  C     ++ G +    +    GI          + +  +AG
Sbjct: 297 LVEGMCFLSATSVASALRVCASLADLRMGTQ-LHALLAKSGIHADLTAGNSLLSMYAKAG 355

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAG 596
             +EA  + D +  K +   + ALL+G
Sbjct: 356 LINEATMLFDEIAIKDTIS-YGALLSG 381



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 158/346 (45%), Gaps = 53/346 (15%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+ A  +L++ Y+ +  +  A  +F++  +K  DT+ Y A+++ Y  N     A  +F+ 
Sbjct: 340 DLTAGNSLLSMYAKAGLINEATMLFDEIAIK--DTISYGALLSGYVQNGKAEEAFLVFKK 397

Query: 140 MRRDDVKPDNFTFTSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
           M+  +V+PD  T  S++ A + L   +  +C   H +V+  G  L TS+ N+LI +Y KC
Sbjct: 398 MQACNVQPDIATMVSLIPACSHLAALQHGRCS--HGSVIIRGLALETSICNSLIDMYAKC 455

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
                      +  +R+VFD+MP RD +SW TM+ GY            + G+ +     
Sbjct: 456 ---------GRIDLSRQVFDKMPARDIVSWNTMIAGYG-----------IHGLGKEATTL 495

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ-----VHAYLLRTEA 313
           +           L M     + D+ T+  +I+AC++SGL   GK       H Y +    
Sbjct: 496 F-----------LSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGIL--- 541

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSAYVSAGLIDEAK 372
            P  E  +     +V L  + G ++EA      MP + D+  W A+L A      ID  K
Sbjct: 542 -PRMEHYI----CMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGK 596

Query: 373 S---LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
               + + +      ++ ++ +  +  G  +E  ++    +++GFK
Sbjct: 597 QVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFK 642



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 15/111 (13%)

Query: 28  PITSSLA-----RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIV 82
           P  S LA     R  H  +I  G      I N LID+Y K  ++  +R +FD++P  DIV
Sbjct: 415 PACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIV 474

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMR------DTVFYNAMITAYSHN 127
           +  T+IA Y      K A  +F    L M+      D V +  +I A SH+
Sbjct: 475 SWNTMIAGYGIHGLGKEATTLF----LSMKNQGFEPDDVTFICLIAACSHS 521


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 260/712 (36%), Positives = 380/712 (53%), Gaps = 70/712 (9%)

Query: 80   DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
            DI+  T L+  Y+     + A+++F    L+ RD V ++A+I A         A+ LF++
Sbjct: 363  DILVATPLMVMYAKCGETEKAKQLF--WGLQGRDLVAWSAIIAALVQTGYPEEALSLFQE 420

Query: 140  MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
            M+   +KP+  T  S+L A A +    K    +HC  VK+      S   AL+S+Y KC 
Sbjct: 421  MQNQKMKPNRVTLMSILPACADL-SLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKC- 478

Query: 200  SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                        AA   F+ M  RD ++W +++ GY +                 +G  +
Sbjct: 479  --------GFFTAALTTFNRMSSRDIVTWNSLINGYAQ-----------------IGDPY 513

Query: 260  NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
            NA+   Y     K+ +  I  D  T   V+ ACA       G  +H  ++    K   E 
Sbjct: 514  NAIDMFY-----KLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIV----KLGFES 564

Query: 320  SLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
               V NAL+ +Y KCG +  A  +FN+    +D V+WN                      
Sbjct: 565  DCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWN---------------------- 602

Query: 379  RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
                     V+I+   QNG+ +E +  F QMRLE F P    F   + + A L A   G 
Sbjct: 603  ---------VIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGM 653

Query: 439  QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
              HA ++  G+ S+   GN+LI MYA+CG +  +  +FN M + D+VSWNAM++    HG
Sbjct: 654  AFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHG 713

Query: 499  NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
            +G RAI L+  M +  +  D ++F++VLSAC H GLV+EGR+ F +M   Y I P  +HY
Sbjct: 714  HGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHY 773

Query: 559  ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
            A  +DLL RAG F E    I  +P +P A +W ALL  CR+H N+ LG  A + L +L P
Sbjct: 774  ACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEP 833

Query: 619  HHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHP 678
             +   +V+LS++YA  GRW DA + R  M D G+KK PGCSW+E+ NKVH F V D +HP
Sbjct: 834  RNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHP 893

Query: 679  EAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGG 738
            + ++++     L+ +M K+GYVPD   VL ++E + KE  L +HSE+LA+ F L+  P G
Sbjct: 894  QLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPG 953

Query: 739  ATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            +T++++KNLR+C DCH   KF+SK+  R I+VRD  RFHHF DG CSC DYW
Sbjct: 954  STIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  182 bits (461), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 144/589 (24%), Positives = 245/589 (41%), Gaps = 100/589 (16%)

Query: 41  MISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP----QPDIVARTTLIAAYSASDN 96
           M+  G +P ++    ++     +L L        EI     + D+     L+  YS   +
Sbjct: 120 MVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGD 179

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
           +K ARE+F+K P   RD V +NAMI   S + +   A++ FR M+   V+P + +  ++ 
Sbjct: 180 LKRAREVFDKMP--KRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLF 237

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
             +  +   E  C  +H  V +      ++V N LI +Y KC                  
Sbjct: 238 PGICKLSNIE-LCRSIHGYVFRRD--FSSAVSNGLIDLYSKCGD---------------- 278

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR------- 269
                                   +D AR   D M +   V+W  +++GY H        
Sbjct: 279 ------------------------VDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVL 314

Query: 270 EL--KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327
           EL  KM +  +++++ +  S   A A +     GK++H   L+         + P    L
Sbjct: 315 ELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATP----L 370

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWT 387
           + +Y KCG+                                ++AK LF  ++ R+L++W+
Sbjct: 371 MVMYAKCGET-------------------------------EKAKQLFWGLQGRDLVAWS 399

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447
            +I+ L Q GY EE L LF +M+ +  KP        + +CA L  L+ G+ +H   V +
Sbjct: 400 AIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKA 459

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
             DS LS G AL++MYA+CG   AA   FN M + D V+WN++I    Q G+   AI+++
Sbjct: 460 DMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMF 519

Query: 508 EQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG---PYGIPPGEDHYARFIDL 564
            ++    I PD  T + V+ AC     + +G      +HG     G           ID+
Sbjct: 520 YKLRLSAINPDAGTMVGVVPACALLNDLDQG----TCIHGLIVKLGFESDCHVKNALIDM 575

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
             + G    A+ + +   F      W  ++A    +G+    I +  Q+
Sbjct: 576 YAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQM 624



 Score =  176 bits (447), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 138/526 (26%), Positives = 229/526 (43%), Gaps = 112/526 (21%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y   L  C   NP+       +HA +I SGFK   H I  LI++Y          +LF +
Sbjct: 35  YPRLLSSCKHLNPLLQ-----IHAQIIVSGFK-HHHSITHLINLY----------SLFHK 78

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
                                  LAR +F+ TP   R  + +N+MI AY+ +   + A+E
Sbjct: 79  ---------------------CDLARSVFDSTPNPSR--ILWNSMIRAYTRSKQYNEALE 115

Query: 136 LFRDMRRDDVKPDNFTFTSVLSAL--ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
           ++  M    ++PD +TFT VL A   AL ++E    +  H  + + G      +   L+ 
Sbjct: 116 MYYCMVEKGLEPDKYTFTFVLKACTGALNLQEG---VWFHGEIDRRGLERDVFIGAGLVD 172

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
           +Y         S    +  AR VFD+MP+RD ++W  M+ G  +++    A +F   M  
Sbjct: 173 MY---------SKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQ- 222

Query: 254 NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
                                ++ ++    +  ++           L + +H Y+ R   
Sbjct: 223 ---------------------LVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRR-- 259

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
               +FS  V+N L+ LY KCG V+ AR +F+QM ++D VSW  +++ Y           
Sbjct: 260 ----DFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGY----------- 304

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
                               A NG   E L+LF +M+L   +    +   A  + A    
Sbjct: 305 --------------------AHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETID 344

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
           LE G+++H   +    DS +     L+ MYA+CG  E A  +F  +   D V+W+A+IAA
Sbjct: 345 LEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAA 404

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
           L Q G    A+ L+++M  + + P+R+T +++L AC    L+K G+
Sbjct: 405 LVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGK 450



 Score =  112 bits (281), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 174/415 (41%), Gaps = 57/415 (13%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + D   +  LI  Y+   ++  A  +FNKT    +D V +N +I AY  N +   AI  F
Sbjct: 563 ESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFT-KDEVTWNVIIAAYMQNGHAKEAISSF 621

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
             MR ++  P++ TF SVL A A +    ++ M  H  +++ G    T V N+LI +Y K
Sbjct: 622 HQMRLENFHPNSVTFVSVLPAAAYLA-AFREGMAFHACIIQMGFLSNTLVGNSLIDMYAK 680

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C           +  + ++F+EM  +D +SW  M++GY  + + D A      M E+   
Sbjct: 681 C---------GQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQES--- 728

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV-HAYLLRTEAKPT 316
                              ++Q+D  ++ SV+SAC + GL   G+++ H+   +   KP 
Sbjct: 729 -------------------QVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPD 769

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA---YVSAGLIDEAK 372
            E        +V L  + G  +E       MP E D   W A+L +   + +  L + A 
Sbjct: 770 LEHY----ACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVAL 825

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
                +  RN   + V+ S  AQ+G   +  K  S+M   G K              G  
Sbjct: 826 DHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLK-----------KTPGCS 874

Query: 433 ALENGRQLHAQLV----HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
            +E   ++HA  V    H   +S     N L+    + G V   +CV   +   D
Sbjct: 875 WVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEED 929



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 104/232 (44%), Gaps = 12/232 (5%)

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
           D A+S+F++    + + W  MI    ++    E L+++  M  +G +P  Y F   + +C
Sbjct: 80  DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKAC 139

Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
            G   L+ G   H ++   G +  +  G  L+ MY++ G ++ A  VF+ MP  D V+WN
Sbjct: 140 TGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWN 199

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP 548
           AMIA L Q  +   A++ +  M   G+ P  ++ L +       G+ K      E     
Sbjct: 200 AMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLF-----PGICKLSN--IELCRSI 252

Query: 549 YGIPPGEDHYAR----FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           +G     D  +      IDL  + G    A+ V D +  +     W  ++AG
Sbjct: 253 HGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVS-WGTMMAG 303



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 6/172 (3%)

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           ++SC  L  L    Q+HAQ++ SG+    S  + LI +Y+     + A  VF++ PN   
Sbjct: 39  LSSCKHLNPL---LQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPSR 94

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
           + WN+MI A  +      A+E+Y  M+++G+ PD+ TF  VL AC  A  ++EG  +F  
Sbjct: 95  ILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEG-VWFHG 153

Query: 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
                G+       A  +D+  + G    A++V D +P K     W A++AG
Sbjct: 154 EIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP-KRDVVAWNAMIAG 204



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 33/123 (26%)

Query: 36  SVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASD 95
           + HA +I  GF     + N LID+Y K  +L Y+  LF+E+   D               
Sbjct: 654 AFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKD--------------- 698

Query: 96  NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV 155
                             TV +NAM++ Y+ + +G  AI LF  M+   V+ D+ +F SV
Sbjct: 699 ------------------TVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSV 740

Query: 156 LSA 158
           LSA
Sbjct: 741 LSA 743


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 257/718 (35%), Positives = 399/718 (55%), Gaps = 71/718 (9%)

Query: 78  QPDIVARTTLIAAYSASDN-VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
           + D+    +LI  +   +N  + A ++F+K  +   + V +  MIT          AI  
Sbjct: 199 ESDVCVGCSLIDMFVKGENSFENAYKVFDK--MSELNVVTWTLMITRCMQMGFPREAIRF 256

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           F DM     + D FT +SV SA A + E      Q+H   ++SG  L   V  +L+ +Y 
Sbjct: 257 FLDMVLSGFESDKFTLSSVFSACAEL-ENLSLGKQLHSWAIRSG--LVDDVECSLVDMYA 313

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           KC      S+   +   R+VFD M +   +SWT ++TGY+KN   + A E ++  SE   
Sbjct: 314 KC------SADGSVDDCRKVFDRMEDHSVMSWTALITGYMKN--CNLATEAINLFSE--- 362

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
                +  G+V           + + FT++S   AC N    R+GKQV     +      
Sbjct: 363 ----MITQGHV-----------EPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKR----- 402

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
               L  N+++                            N+++S +V +  +++A+  FE
Sbjct: 403 ---GLASNSSVA---------------------------NSVISMFVKSDRMEDAQRAFE 432

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
           ++ E+NL+S+   + G  +N   E+  KL S++         + FA  ++  A +G++  
Sbjct: 433 SLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRK 492

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           G Q+H+Q+V  G   +    NALI+MY++CG ++ A+ VFN M N + +SW +MI    +
Sbjct: 493 GEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAK 552

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
           HG   R +E + QM++EG+ P+ +T++ +LSAC+H GLV EG R+F +M+  + I P  +
Sbjct: 553 HGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKME 612

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           HYA  +DLLCRAG  ++A + I+++PF+    +W   L  CR+H N +LG  AA ++ +L
Sbjct: 613 HYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILEL 672

Query: 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTA 676
            P+    Y+ LSN+YA  G+W+++  +R+ M++R + KE GCSWIEV +K+H F V DTA
Sbjct: 673 DPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTA 732

Query: 677 HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYA----LSTHSEKLAVAFGL 732
           HP A  +Y  L++L+ E+++ GYVPDT  VLH +E +  E      L  HSEK+AVAFGL
Sbjct: 733 HPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGL 792

Query: 733 MKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +       VRV KNLR+CGDCHNA K++S V GREIV+RD  RFHHF+DGKCSC DYW
Sbjct: 793 ISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 141/585 (24%), Positives = 260/585 (44%), Gaps = 91/585 (15%)

Query: 65  KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTP-LKMRDTVFYNAMITA 123
           KLV+AR +  +I +PD V   +LI+ YS S +   A ++F        RD V ++AM+  
Sbjct: 82  KLVHARLIEFDI-EPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMAC 140

Query: 124 YSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGL 183
           Y +N     AI++F +     + P+++ +T+V+ A +               V +   G 
Sbjct: 141 YGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACS---------NSDFVGVGRVTLGF 191

Query: 184 FTSVLNALISVYVKC-VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY-L 241
                +    V V C +   FV   +    A +VFD+M E + ++WT M+T  ++  +  
Sbjct: 192 LMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPR 251

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
           +A R FLD            ++SG+            + D+FT +SV SACA      LG
Sbjct: 252 EAIRFFLD-----------MVLSGF------------ESDKFTLSSVFSACAELENLSLG 288

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC---GKVNEARDIFNQMPERDLVSWNAI 358
           KQ+H++ +R+      E S      LV +Y KC   G V++ R +F++M +  ++SW A+
Sbjct: 289 KQLHSWAIRSGLVDDVECS------LVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTAL 342

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG-FKPC 417
           ++ Y               M+  NL +               E + LFS+M  +G  +P 
Sbjct: 343 ITGY---------------MKNCNLAT---------------EAINLFSEMITQGHVEPN 372

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
            + F+ A  +C  L     G+Q+  Q    G  S+ S  N++I+M+ +   +E A   F 
Sbjct: 373 HFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFE 432

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKE 537
           ++   + VS+N  +    ++ N  +A +L  ++ +  +     TF ++LS   + G +++
Sbjct: 433 SLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRK 492

Query: 538 GRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
           G    E +H      G+   +      I +  + G    A  V + +  + +   W +++
Sbjct: 493 G----EQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENR-NVISWTSMI 547

Query: 595 AGCRIHGNIDLGIQAAEQLFQLMPH----HAGTYVLLSNMYANLG 635
            G   HG     I+  E   Q++      +  TYV + +  +++G
Sbjct: 548 TGFAKHG---FAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVG 589



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 143/602 (23%), Positives = 255/602 (42%), Gaps = 129/602 (21%)

Query: 106 KTPLKMRDTV-----FYNAMITAYSHNSNGHAAIELFRDMRRDDVKP-DNFTFTSVLSAL 159
           K P+K + +V       + +I  + +  +   A+     M RD ++P D+ TF+S+L + 
Sbjct: 13  KLPIKSQPSVSNRINVADRLILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKS- 71

Query: 160 ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDE 219
            +   + +    +H  +++      + + N+LIS+Y K   S           A  VF+ 
Sbjct: 72  CIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDS---------AKAEDVFET 122

Query: 220 M---PERDELSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVAWNALISGYVHRELKMLM 275
           M    +RD +SW+ MM  Y  N   LDA + F++                        L 
Sbjct: 123 MRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVE-----------------------FLE 159

Query: 276 LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC- 334
           L +  +++ YT+VI AC+NS    +G+    +L++T      E  + V  +L+ ++ K  
Sbjct: 160 LGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKT---GHFESDVCVGCSLIDMFVKGE 216

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
                A  +F++M E ++V+W                               T+MI+   
Sbjct: 217 NSFENAYKVFDKMSELNVVTW-------------------------------TLMITRCM 245

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
           Q G+  E ++ F  M L GF+   +  +   ++CA L  L  G+QLH+  + SG    + 
Sbjct: 246 QMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVE 305

Query: 455 AGNALITMYARC---GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGA-RAIELYEQM 510
              +L+ MYA+C   G V+    VF+ M +   +SW A+I    ++ N A  AI L+ +M
Sbjct: 306 C--SLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEM 363

Query: 511 LKEG-ILPDRITFLTVLSACNHA----------------GL------------------- 534
           + +G + P+  TF +   AC +                 GL                   
Sbjct: 364 ITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDR 423

Query: 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP---SAPIWE 591
           +++ +R FE++     +      Y  F+D  CR   F +A  ++  +  +    SA  + 
Sbjct: 424 MEDAQRAFESLSEKNLVS-----YNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFA 478

Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQL-MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650
           +LL+G    G+I  G Q   Q+ +L +  +      L +MY+  G  D A+RV   M +R
Sbjct: 479 SLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENR 538

Query: 651 GV 652
            V
Sbjct: 539 NV 540



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 106/422 (25%), Positives = 179/422 (42%), Gaps = 57/422 (13%)

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
           +D  T++S++ +C  +  FRLGK VHA L+  + +P       + N+L++LY K G   +
Sbjct: 60  MDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDS----VLYNSLISLYSKSGDSAK 115

Query: 340 ARDIFNQM---PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
           A D+F  M    +RD+VSW+A+++ Y                                 N
Sbjct: 116 AEDVFETMRRFGKRDVVSWSAMMACY-------------------------------GNN 144

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG-YDSSLSA 455
           G   + +K+F +    G  P DY +   I +C+    +  GR     L+ +G ++S +  
Sbjct: 145 GRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCV 204

Query: 456 GNALITMYARC-GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
           G +LI M+ +     E A  VF+ M  ++ V+W  MI    Q G    AI  +  M+  G
Sbjct: 205 GCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSG 264

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG--EDHYARFIDLL--CRA-G 569
              D+ T  +V SAC     +  G++    +H  + I  G  +D     +D+   C A G
Sbjct: 265 FESDKFTLSSVFSACAELENLSLGKQ----LHS-WAIRSGLVDDVECSLVDMYAKCSADG 319

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP--HHAGTYVLL 627
              + + V D +    S   W AL+ G     N +L  +A     +++   H    +   
Sbjct: 320 SVDDCRKVFDRME-DHSVMSWTALITG--YMKNCNLATEAINLFSEMITQGHVEPNHFTF 376

Query: 628 SNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYL 687
           S+ +   G   D  RV K +  +  K+    S   V N V    V      +AQ  ++ L
Sbjct: 377 SSAFKACGNLSD-PRVGKQVLGQAFKRGLA-SNSSVANSVISMFVKSDRMEDAQRAFESL 434

Query: 688 EQ 689
            +
Sbjct: 435 SE 436


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 234/625 (37%), Positives = 371/625 (59%), Gaps = 53/625 (8%)

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY----VH 268
           A+ +FD+M +RD  SW  +++ Y K+  +   +   D M     V++N  I+G+      
Sbjct: 77  AQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCP 136

Query: 269 RELKMLMLRIQLD-----EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF--SL 321
           +E   L  R+Q +     E+T  S+++A A     R GKQ+H  ++         F  ++
Sbjct: 137 QESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSII------VRNFLGNV 190

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWN------------------------- 356
            + NAL  +Y KCG++ +AR +F+ + +++LVSWN                         
Sbjct: 191 FIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLS 250

Query: 357 ----------AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
                      I++AY   G +DEA+ +F   +E++++ WT M+ G A+NG  E+ L LF
Sbjct: 251 GHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLF 310

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
           ++M LE  +P  Y  +  ++SCA L +L +G+ +H + + +G +++L   +ALI MY++C
Sbjct: 311 NEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKC 370

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G ++ A  VFN MP  + VSWNAMI    Q+G+   A+EL+E ML++   PD +TF+ +L
Sbjct: 371 GFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGIL 430

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
           SAC H   +++G+ YF+++   +G+ P  DHYA  ++LL R G+  +A  +I ++   P 
Sbjct: 431 SACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPD 490

Query: 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKL 646
             IW  LL+ C   G+I     AA  LF+L P  A  Y++LSNMYA++GRW D A VR L
Sbjct: 491 FLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNL 550

Query: 647 MRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFV 706
           M+ + VKK  G SWIE+DN+VH F  +D  HPE++ +Y+ L  L+ ++++ G+ P+T  V
Sbjct: 551 MKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLV 610

Query: 707 LHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT-VRVLKNLRICGDCHNAFKFMSKVVG 765
           LHD+  D+K  ++  HSEKLA+AFGL+K P G + +R++KN+RIC DCH   KF S+++G
Sbjct: 611 LHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIG 670

Query: 766 REIVVRDGKRFHHFRDGKCSCGDYW 790
           R+I++RD  RFHHF  GKCSC D W
Sbjct: 671 RQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 146/554 (26%), Positives = 255/554 (46%), Gaps = 100/554 (18%)

Query: 1   MMMKNADYI--RTLANRYA-SQLQL-CDPRNPITSSLARSVHAHMISSGFKPREHII-NR 55
           M+ ++ D +  R+ A   A +QL L C   N I    A+ + +HM    F+P +  + N+
Sbjct: 6   MLRQSVDLLCSRSTATSEAYTQLVLECVRTNEINQ--AKRLQSHMEHHLFQPTDSFLHNQ 63

Query: 56  LIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTV 115
           L+ +Y K  KL  A+ LFD++ + D  +   L++AY+ S +++  +  F++ P   RD+V
Sbjct: 64  LLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPF--RDSV 121

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
            YN  I  +S NS    ++ELF+ M+R+  +P  +T  S+L+A A ++ + +   Q+H +
Sbjct: 122 SYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLL-DLRYGKQIHGS 180

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
           ++         + NAL  +Y KC           +  AR +FD + +++ +SW  M++GY
Sbjct: 181 IIVRNFLGNVFIWNALTDMYAKCGE---------IEQARWLFDCLTKKNLVSWNLMISGY 231

Query: 236 VKNDY-----------------------------------LDAAREFLDGMSENVGVAWN 260
            KN                                     +D AR       E   V W 
Sbjct: 232 AKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWT 291

Query: 261 ALISGYVH--REL-------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
           A++ GY    RE        +ML+  I+ D +T +SV+S+CA       G+ VH   +  
Sbjct: 292 AMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILA 351

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
                   +L V++AL+ +Y KCG +++AR +FN MP R++VSWNA              
Sbjct: 352 GLNN----NLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNA-------------- 393

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
                            MI G AQNG+ ++ L+LF  M  + FKP +  F G +++C   
Sbjct: 394 -----------------MIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHC 436

Query: 432 GALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNA 489
             +E G++    + +  G   +L     ++ +  R G +E A  +   M  + D + W+ 
Sbjct: 437 NWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWST 496

Query: 490 MIAALGQHGNGARA 503
           +++     G+   A
Sbjct: 497 LLSICSTKGDIVNA 510



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 87/258 (33%), Positives = 147/258 (56%), Gaps = 3/258 (1%)

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           YT ++  C  +      K++ +++     +PT  F   ++N L+ LY K GK+ +A+++F
Sbjct: 25  YTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSF---LHNQLLHLYAKFGKLRDAQNLF 81

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           ++M +RD  SWNA+LSAY  +G I   K+ F+ M  R+ +S+   I+G + N   +E L+
Sbjct: 82  DKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLE 141

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           LF +M+ EGF+P +Y     + + A L  L  G+Q+H  ++   +  ++   NAL  MYA
Sbjct: 142 LFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYA 201

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           +CG +E A  +F+ +   + VSWN MI+   ++G   + I L  QM   G +PD++T  T
Sbjct: 202 KCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMST 261

Query: 525 VLSACNHAGLVKEGRRYF 542
           +++A    G V E RR F
Sbjct: 262 IIAAYCQCGRVDEARRVF 279


>gi|356502497|ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 852

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 261/766 (34%), Positives = 407/766 (53%), Gaps = 159/766 (20%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           +H +++ +GF+   +++  L+D+Y K   +  A  LF  +                    
Sbjct: 234 IHGYVVKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGLA------------------- 274

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
                  FNK      + V + AM+T Y+ N + H AIE FR M  + V+ + FTF S+L
Sbjct: 275 -------FNKG-----NHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSIL 322

Query: 157 SALALIVEEEKQCM--QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           +A + +      C   Q+H  +V++G G    V +AL+ +Y KC           +G+A+
Sbjct: 323 TACSSV---SAHCFGEQVHGCIVRNGFGCNAYVQSALVDMYAKCGD---------LGSAK 370

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL--- 271
           RV + M + D                                V+WN++I G V       
Sbjct: 371 RVLENMEDDDV-------------------------------VSWNSMIVGCVRHGFEEE 399

Query: 272 ------KMLMLRIQLDEFTYTSVISACANSGLFRL-GKQVHAYLLRTEAKPTPEFSLPVN 324
                 KM    +++D +T+ SV++ C    + R+ GK VH  +++T  +    + L V+
Sbjct: 400 AILLFKKMHARNMKIDHYTFPSVLNCCI---VGRIDGKSVHCLVIKTGFE---NYKL-VS 452

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
           NALV +Y K   +N                      AY          ++FE M E++++
Sbjct: 453 NALVDMYAKTEDLN---------------------CAY----------AVFEKMFEKDVI 481

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
           SWT +++G  QNG  EE LK F  MR+ G  P  +  A  +++CA L  LE G+Q+H+  
Sbjct: 482 SWTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASILSACAELTLLEFGKQVHSDF 541

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
           +  G  SSLS  N+L+TMYA+CG ++ A+ +F +M   D ++W A+I    ++G G    
Sbjct: 542 IKLGLRSSLSVNNSLVTMYAKCGCLDDADAIFVSMHVRDVITWTALIVGYARNGKG---- 597

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
                                          ++  +YF+ M   YGI PG +HYA  IDL
Sbjct: 598 -------------------------------RDSLKYFQQMKKIYGIEPGPEHYACMIDL 626

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624
             R GK  EAK++++ +  KP A +W+ALLA CR+HGN++LG +AA  LF+L P +A  Y
Sbjct: 627 FGRLGKLDEAKEILNQMDVKPDATVWKALLAACRVHGNLELGERAATNLFELEPMNAMPY 686

Query: 625 VLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVY 684
           V+LSNMY    +WDDAA++R+LM+ +G+ KEPGCSWIE+++++H F+ +D  HP    +Y
Sbjct: 687 VMLSNMYLAARKWDDAAKIRRLMKSKGITKEPGCSWIEMNSRLHTFISEDRGHPREAEIY 746

Query: 685 KYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVL 744
             +++++  ++++GYVPD  F LHDM+ + KE  L+ HSEKLAVAFGL+  P GA +R+ 
Sbjct: 747 SKIDEIIRRIKEVGYVPDMNFSLHDMDREGKEAGLAYHSEKLAVAFGLLASPPGAPIRIF 806

Query: 745 KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KNLR+CGDCH+A K++S V  R I++RD   FHHF++G+CSC DYW
Sbjct: 807 KNLRVCGDCHSAMKYISGVFTRHIILRDSNCFHHFKEGECSCEDYW 852



 Score =  176 bits (447), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 151/623 (24%), Positives = 281/623 (45%), Gaps = 90/623 (14%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           + V  H I+  ++   H  N+L++   KS ++  AR LFD++ Q D     T+++ Y+  
Sbjct: 101 QQVVMHNIADSYQSIFHS-NQLLNGLSKSGQIDDARELFDKMLQRDEYTWNTMVSGYANV 159

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
             +  ARE+FN      R ++ ++++I+ Y        A +LF+ MR +  KP  +T  S
Sbjct: 160 GRLVEARELFN--GFSSRSSITWSSLISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGS 217

Query: 155 VL---SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC--VSSPFVSSRSL 209
           +L   SAL LI + E     +H  VVK+G      V+  L+ +Y KC  +S   +  + L
Sbjct: 218 ILRGCSALGLIQKGE----MIHGYVVKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGL 273

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
                       + + + WT M+TGY +N     A EF                  Y+H 
Sbjct: 274 ---------AFNKGNHVLWTAMVTGYAQNGDDHKAIEFFR----------------YMHT 308

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
           E       ++ ++FT+ S+++AC++      G+QVH  ++R            V +ALV 
Sbjct: 309 E------GVESNQFTFPSILTACSSVSAHCFGEQVHGCIVRNGFGCNA----YVQSALVD 358

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           +Y KCG +  A+ +   M + D+VSWN+++   V  G  +EA  LF+ M  RN+      
Sbjct: 359 MYAKCGDLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKMHARNM------ 412

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
                                    K   Y F  ++ +C  +G ++ G+ +H  ++ +G+
Sbjct: 413 -------------------------KIDHYTFP-SVLNCCIVGRID-GKSVHCLVIKTGF 445

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
           ++     NAL+ MYA+   +  A  VF  M   D +SW +++    Q+G+   +++ +  
Sbjct: 446 ENYKLVSNALVDMYAKTEDLNCAYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCD 505

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY---GIPPGEDHYARFIDLLC 566
           M   G+ PD+    ++LSAC    L++ G++    +H  +   G+          + +  
Sbjct: 506 MRISGVSPDQFIVASILSACAELTLLEFGKQ----VHSDFIKLGLRSSLSVNNSLVTMYA 561

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT--Y 624
           + G   +A  +  S+  +     W AL+ G   +G     ++  +Q+ ++     G   Y
Sbjct: 562 KCGCLDDADAIFVSMHVR-DVITWTALIVGYARNGKGRDSLKYFQQMKKIYGIEPGPEHY 620

Query: 625 VLLSNMYANLGRWDDAARVRKLM 647
             + +++  LG+ D+A  +   M
Sbjct: 621 ACMIDLFGRLGKLDEAKEILNQM 643


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 275/793 (34%), Positives = 400/793 (50%), Gaps = 121/793 (15%)

Query: 7   DYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKL 66
           D +R +   +   L+LC   + +     + +H  +I+SGF                    
Sbjct: 24  DSVRPVVYNFTYLLKLCGDNSDLKR--GKEIHGSVITSGF-------------------- 61

Query: 67  VYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSH 126
                        ++ A T ++  Y+    +  A  MF++ P   RD V +N MI+ Y+ 
Sbjct: 62  -----------SWNLFAMTGVVNMYAKCRQINDAYNMFDRMP--ERDLVCWNTMISGYAQ 108

Query: 127 NSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS 186
           N     A+ L   M  +  +PD+ T  S+L A+A      +  M +H  V+++G     +
Sbjct: 109 NGFAKVALMLVLRMSEEGHRPDSITIVSILPAVA-DTRLLRIGMAVHGYVLRAGFESLVN 167

Query: 187 VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAARE 246
           V  AL+ +Y KC S                                        +  AR 
Sbjct: 168 VSTALVDMYSKCGS----------------------------------------VSIARV 187

Query: 247 FLDGMSENVGVAWNALISGYVHR---ELKMLMLRIQLDE------FTYTSVISACANSGL 297
             DGM     V+WN++I GYV     E  ML+ +  LDE       T    + ACA+ G 
Sbjct: 188 IFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGD 247

Query: 298 FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA 357
              GK VH   L  + K   + S  V N+L+++Y KC +V                    
Sbjct: 248 LERGKFVHK--LVDQLKLDSDVS--VMNSLISMYSKCKRV-------------------- 283

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
                      D A  +F+ +R + L+SW  MI G AQNG   E L  F +M+    KP 
Sbjct: 284 -----------DIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPD 332

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
            +     I + A L      + +H  ++    D ++    AL+ MYA+CG +  A  +F+
Sbjct: 333 SFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFD 392

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKE 537
            M     ++WNAMI   G HG G  ++EL+++M K  I P+ ITFL  LSAC+H+GLV+E
Sbjct: 393 MMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEE 452

Query: 538 GRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
           G  +FE+M   YGI P  DHY   +DLL RAG+ ++A D I  +P KP   ++ A+L  C
Sbjct: 453 GLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGAC 512

Query: 598 RIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPG 657
           +IH N+DLG +AA ++F+L P   G +VLL+N+YA    W   A+VR +M   G++K PG
Sbjct: 513 KIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPG 572

Query: 658 CSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEY 717
           CS +E+ N+VH F    T+HP+++ +Y YLE LV E+R  GYVPDT  + HD+E D K  
Sbjct: 573 CSLVEIGNEVHSFYSGTTSHPQSKKIYSYLETLVDEIRAAGYVPDTNSI-HDVEDDVKVQ 631

Query: 718 ALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFH 777
            L+THSEKLA+AFGL+    G  + + KNLR+CGDCHNA K++S V GREI+VRD  RFH
Sbjct: 632 LLNTHSEKLAIAFGLLNTSTGTPIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFH 691

Query: 778 HFRDGKCSCGDYW 790
            F+DG CSCGDYW
Sbjct: 692 LFKDGVCSCGDYW 704



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 139/498 (27%), Positives = 227/498 (45%), Gaps = 73/498 (14%)

Query: 120 MITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKS 179
           M+  Y+ +S+  +A+  F  M+ D V+P  + FT +L  L     + K+  ++H +V+ S
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLK-LCGDNSDLKRGKEIHGSVITS 59

Query: 180 GTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND 239
           G       +  ++++Y KC           +  A  +FD MPERD + W TM++GY +N 
Sbjct: 60  GFSWNLFAMTGVVNMYAKCRQ---------INDAYNMFDRMPERDLVCWNTMISGYAQNG 110

Query: 240 YLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFR 299
           +   A   +  MSE              HR           D  T  S++ A A++ L R
Sbjct: 111 FAKVALMLVLRMSEE------------GHRP----------DSITIVSILPAVADTRLLR 148

Query: 300 LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAIL 359
           +G  VH Y+LR       E  + V+ ALV +Y KCG V+ AR IF+ M  R +VSWN+++
Sbjct: 149 IGMAVHGYVLRAGF----ESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMI 204

Query: 360 SAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY 419
             YV                               Q+G  E  + +F +M  EG +P + 
Sbjct: 205 DGYV-------------------------------QSGDAEGAMLIFQKMLDEGVQPTNV 233

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
              GA+ +CA LG LE G+ +H  +     DS +S  N+LI+MY++C  V+ A  +F  +
Sbjct: 234 TVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNL 293

Query: 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
            N   VSWNAMI    Q+G    A+  + +M    I PD  T ++V+ A     + ++  
Sbjct: 294 RNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQA- 352

Query: 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI 599
           ++   +     +          +D+  + G    A+ + D +  +     W A++ G   
Sbjct: 353 KWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNAR-HVITWNAMIDGYGT 411

Query: 600 HGNIDLGIQAAEQLFQLM 617
           HG   LG  + E LF+ M
Sbjct: 412 HG---LGKTSVE-LFKEM 425


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/523 (43%), Positives = 330/523 (63%), Gaps = 8/523 (1%)

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
           +M  L +  D FT   V+ +CA+     +G+ VH   LR       E    V  +L+ +Y
Sbjct: 97  RMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGL----EGDFYVGASLIDMY 152

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            KCG + +AR +F++M  RD+ SWNA+++ Y+  G I  A+ LFE M  RN++SWT MIS
Sbjct: 153 VKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMIS 212

Query: 392 GLAQNGYGEEGLKLFSQMRLEG--FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           G  QNG+ E+ L LF +M  +G   KP        + +CA   ALE GR++H      G 
Sbjct: 213 GYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGL 272

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPN--VDSVSWNAMIAALGQHGNGARAIELY 507
             + S   AL  MYA+C  +  A C F+ +     + ++WN MI A   HG G  A+ ++
Sbjct: 273 HLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIF 332

Query: 508 EQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR 567
           E ML+ G+ PD +TF+ +LS C+H+GL+  G  +F  M   + + P  +HYA  +DLL R
Sbjct: 333 ENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGR 392

Query: 568 AGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627
           AG+  EAK++I  +P +    +W ALLA CR H N+++   AA +LF L P ++G YVLL
Sbjct: 393 AGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLL 452

Query: 628 SNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYL 687
           SN+YA  G W++  ++R L++ +G+KK PGCSWIE++ K H+F+  D +HP+A+ +YK+L
Sbjct: 453 SNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFL 512

Query: 688 EQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNL 747
           E L  +++  GY+PDT FVLHD+  ++KEY L+THSEKLA+AFGL+    G  +RV KNL
Sbjct: 513 EALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNL 572

Query: 748 RICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           RICGDCH A KF+SK+  REI+VRD  RFH F+DG CSCGDYW
Sbjct: 573 RICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 615



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 181/399 (45%), Gaps = 61/399 (15%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           + R VH   +  G +   ++   LID+Y K   +  AR LFD++   D+ +   LIA Y 
Sbjct: 125 MGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYM 184

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD--DVKPDNF 150
               + +A ++F +  ++ R+ V + AMI+ Y+ N     A+ LF +M +D  ++KP+  
Sbjct: 185 KEGEIGVAEDLFER--MEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWV 242

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           T  SVL A A     E+   ++H      G  L +SV  AL  +Y KC S         +
Sbjct: 243 TIVSVLPACAQSAALERG-RRIHDFANGIGLHLNSSVQTALAGMYAKCYS---------L 292

Query: 211 GAARRVFDEMPE--RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
             AR  FD + +  ++ ++W TM+T Y                S   GV   ++      
Sbjct: 293 VEARCCFDMIAQNGKNLIAWNTMITAYA---------------SHGCGVEAVSIFE---- 333

Query: 269 RELKMLMLRIQLDEFTYTSVISACANSGLFRLG-------KQVHAYLLRTEAKPTPEFSL 321
               ML   +Q D  T+  ++S C++SGL   G         +H+   R E         
Sbjct: 334 ---NMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYA------ 384

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSAYVSAGLID----EAKSLFE 376
                +V L  + G++ EA+++ +QMP +   S W A+L+A  S   ++     A+ LF 
Sbjct: 385 ----CVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLF- 439

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
            +   N  ++ ++ +  A+ G  EE  KL + ++ +G K
Sbjct: 440 VLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMK 478



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 153/332 (46%), Gaps = 38/332 (11%)

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ--MHCTVVKSGTGLFTSVLNAL 191
           +E +  M    +  DNFT   VL + A   +  + CM   +H   ++ G      V  +L
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCA---DLSRVCMGRCVHGQGLRVGLEGDFYVGASL 148

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           I +YVKC          ++G AR++FD+M  RD  SW  ++ GY+K   +  A +  + M
Sbjct: 149 IDMYVKC---------GVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERM 199

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEF------------TYTSVISACANSGLFR 299
                V+W A+ISGY         L +  DE             T  SV+ ACA S    
Sbjct: 200 EHRNIVSWTAMISGYTQNGFAEQALGL-FDEMLQDGSEMKPNWVTIVSVLPACAQSAALE 258

Query: 300 LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--RDLVSWNA 357
            G+++H +            +  V  AL  +Y KC  + EAR  F+ + +  ++L++WN 
Sbjct: 259 RGRRIHDF----ANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNT 314

Query: 358 ILSAYVSAGLIDEAKSLFEAMR----ERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RLE 412
           +++AY S G   EA S+FE M     + + +++  ++SG + +G  + GL  F+ M  + 
Sbjct: 315 MITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIH 374

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
             +P    +A  +      G L   ++L +Q+
Sbjct: 375 SVEPRVEHYACVVDLLGRAGRLVEAKELISQM 406



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 33/178 (18%)

Query: 403 LKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITM 462
           L+ +++M   G    ++     + SCA L  +  GR +H Q +  G +     G +LI M
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151

Query: 463 YARCGVVEAANCVFNTMPNVDSVSWN-------------------------------AMI 491
           Y +CGV+  A  +F+ M   D  SWN                               AMI
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMI 211

Query: 492 AALGQHGNGARAIELYEQMLKEG--ILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
           +   Q+G   +A+ L+++ML++G  + P+ +T ++VL AC  +  ++ GRR  +  +G
Sbjct: 212 SGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANG 269


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 256/757 (33%), Positives = 395/757 (52%), Gaps = 101/757 (13%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R +H  +I++GF+     +  ++++Y K  ++  A  +F+ +PQ D+V+          
Sbjct: 161 GREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVS---------- 210

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                                  +N ++  Y+ N     A+++   M+    KPD+ T  
Sbjct: 211 -----------------------WNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLV 247

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           SVL A+A + +  +    +H    ++G     +V  A++  Y KC S         + +A
Sbjct: 248 SVLPAVADL-KALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGS---------VRSA 297

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           R VF  M  R+ +SW TM+ GY +N           G SE     +           LKM
Sbjct: 298 RLVFKGMSSRNVVSWNTMIDGYAQN-----------GESEEAFATF-----------LKM 335

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
           L   ++    +    + ACAN G    G+ VH  L   +      F + V N+L+++Y K
Sbjct: 336 LDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIG----FDVSVMNSLISMYSK 391

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
           C +V+ A  +F  +  + +V+WNA++  Y   G ++EA                      
Sbjct: 392 CKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEA---------------------- 429

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL 453
                    L LF +M+    KP  +     IT+ A L      + +H   + +  D ++
Sbjct: 430 ---------LNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNV 480

Query: 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE 513
               ALI  +A+CG ++ A  +F+ M     ++WNAMI   G +G+G  A++L+ +M   
Sbjct: 481 FVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNG 540

Query: 514 GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE 573
            + P+ ITFL+V++AC+H+GLV+EG  YFE+M   YG+ P  DHY   +DLL RAG+  +
Sbjct: 541 SVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDD 600

Query: 574 AKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN 633
           A   I  +P KP   +  A+L  CRIH N++LG + A++LF L P   G +VLL+NMYA+
Sbjct: 601 AWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYAS 660

Query: 634 LGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLE 693
              WD  ARVR  M  +G++K PGCS +E+ N+VH F    T HP+++ +Y YLE L  E
Sbjct: 661 ASMWDKVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGDE 720

Query: 694 MRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDC 753
           M+  GYVPDT  + HD+E D KE  LS+HSE+LA+AFGL+    G  + + KNLR+CGDC
Sbjct: 721 MKAAGYVPDTNSI-HDVEEDVKEQLLSSHSERLAIAFGLLNTRHGTAIHIRKNLRVCGDC 779

Query: 754 HNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           H A K++S V GREI+VRD +RFHHF++G CSCGDYW
Sbjct: 780 HEATKYISLVTGREIIVRDLRRFHHFKNGICSCGDYW 816



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 159/619 (25%), Positives = 270/619 (43%), Gaps = 125/619 (20%)

Query: 84  RTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD 143
           +T LI+ +   +++  A  +F   P++ +  V Y+ M+  Y+ NS    A+  +  MR D
Sbjct: 79  QTKLISLFCKFNSITEAARVFE--PVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCD 136

Query: 144 DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
           +V P  + FT +L  L+    + ++  ++H  V+ +G       + A++++Y KC     
Sbjct: 137 EVMPVVYDFTYLLQ-LSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQ--- 192

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
                 +  A ++F+ MP+RD +SW T++ GY +N +   A + +               
Sbjct: 193 ------IEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVV--------------- 231

Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
                  L+M     + D  T  SV+ A A+    R+G+ +H Y  R       E+ + V
Sbjct: 232 -------LQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGF----EYMVNV 280

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
             A++  Y+KCG V  AR +F  M  R++VSWN ++  Y                     
Sbjct: 281 ATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGY--------------------- 319

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
                     AQNG  EE    F +M  EG +P + +  GA+ +CA LG LE GR +H  
Sbjct: 320 ----------AQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRL 369

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
           L        +S  N+LI+MY++C  V+ A  VF  + +   V+WNAMI    Q+G    A
Sbjct: 370 LDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEA 429

Query: 504 IELYEQMLKEGILPDRITFLTVLSAC---------------------------------N 530
           + L+ +M    I PD  T ++V++A                                   
Sbjct: 430 LNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDT 489

Query: 531 HA--GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL---PFKP 585
           HA  G ++  R+ F+ M   + I      +   ID     G   EA D+ + +     KP
Sbjct: 490 HAKCGAIQTARKLFDLMQERHVIT-----WNAMIDGYGTNGHGREALDLFNEMQNGSVKP 544

Query: 586 SAPIWEALLAGCRIHGNIDLGI---QAAEQLFQLMP--HHAGTYVLLSNMYANLGRWDDA 640
           +   + +++A C   G ++ G+   ++ ++ + L P   H G  V   ++    GR DDA
Sbjct: 545 NEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMV---DLLGRAGRLDDA 601

Query: 641 ARVRKLMRDRGVKKEPGCS 659
               K ++D  VK  PG +
Sbjct: 602 W---KFIQDMPVK--PGIT 615


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 256/759 (33%), Positives = 404/759 (53%), Gaps = 73/759 (9%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYC--KSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           + +H+H I  G         R+I   C  +S K++YAR +FD IPQP +           
Sbjct: 24  KQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTLF---------- 73

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                   +N MI  YS  ++    + ++  M   ++KPD FTF
Sbjct: 74  -----------------------IWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTF 110

Query: 153 TSVLSALAL-IVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             +L      +  +  + +  H   VK G      V  A I ++  C          L+ 
Sbjct: 111 PFLLKGFTRNMALQYGKVLLNH--AVKHGFDSNLFVQKAFIHMFSLC---------RLVD 159

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            AR+VFD     + ++W  M++GY +      ++     M E  GV+ N++         
Sbjct: 160 LARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEM-EKRGVSPNSV--------- 209

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                       T   ++SAC+       GK ++ Y+         E +L + N L+ ++
Sbjct: 210 ------------TLVLMLSACSKLKDLEGGKHIYKYI----NGGIVERNLILENVLIDMF 253

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
             CG+++EA+ +F+ M  RD++SW +I++ + + G ID A+  F+ + ER+ +SWT MI 
Sbjct: 254 AACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMID 313

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
           G  +     E L LF +M++   KP ++     +T+CA LGALE G  +   +  +   +
Sbjct: 314 GYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKN 373

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
               GNALI MY +CG V  A  VF  M + D  +W AMI  L  +G+G  A+ ++  M+
Sbjct: 374 DTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMI 433

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571
           +  I PD IT++ VL AC HAG+V++G+ +F +M   +GI P   HY   +DLL RAG+ 
Sbjct: 434 EASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRL 493

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631
            EA +VI ++P KP++ +W +LL  CR+H N+ L   AA+Q+ +L P +   YVLL N+Y
Sbjct: 494 EEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIY 553

Query: 632 ANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLV 691
           A   RW++  +VRKLM +RG+KK PGCS +E++  V+ F+  D +HP+++ +Y  LE ++
Sbjct: 554 AACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMM 613

Query: 692 LEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICG 751
            ++ K GY PDT  V  D+  + KE AL  HSEKLA+A+ L+    G T+R++KNLR+C 
Sbjct: 614 QDLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGITIRIVKNLRMCV 673

Query: 752 DCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           DCH+  K +S+   RE++VRD  RFHHFR G CSC ++W
Sbjct: 674 DCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 266/764 (34%), Positives = 400/764 (52%), Gaps = 119/764 (15%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           +H+H+I  GF     + N L+D YCK+  L                              
Sbjct: 165 IHSHIIRFGFSASLIVFNSLVDSYCKTCCL------------------------------ 194

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
             +A ++F++ P K  D+V +N MIT Y+       A++LF  MR  D +P  FTF ++L
Sbjct: 195 -DIASQLFSEMPTK--DSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAML 251

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
             +++  E+     Q+H   +K+       V NAL+  Y K                   
Sbjct: 252 -GMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSK------------------- 291

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV----HRELK 272
                                +DY+D A+   D M E  GV++N +I+GY     + +  
Sbjct: 292 ---------------------HDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSF 330

Query: 273 MLMLRIQ-----LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327
            L  R+Q        F + +++S  A      +G+Q HA  + T A       + V NAL
Sbjct: 331 DLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVS----EVQVGNAL 386

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWT 387
           V +Y KC K  +A  IF  +             AY                  RN + WT
Sbjct: 387 VDMYAKCEKFEDANRIFANL-------------AY------------------RNSVPWT 415

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447
            +IS   Q G+ EE LK+F +M  E        FA  + + A L ++  G+QLH+ ++  
Sbjct: 416 AIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSVIRL 475

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
           G  SS+ +G+ L+ MYA CG ++ A  VF  MP+ + V WNA+I+A  Q+G+       +
Sbjct: 476 GLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSF 535

Query: 508 EQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR 567
             M++ G+ PD ++FL+VL+AC+H GLV++   YF +M   Y + P   HYA  ID+LCR
Sbjct: 536 ADMIESGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCR 595

Query: 568 AGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP-HHAGTYVL 626
           +G+F+EA+++I  +PF+P   +W ++L  CRIH N DL  +AA+QLF++     A  YV 
Sbjct: 596 SGRFNEAENLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVN 655

Query: 627 LSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKY 686
           +SN+YA  G+W++AA+V+K MR+RGVKK    SW+E+D++VHVF  +D  HP+ + + + 
Sbjct: 656 MSNIYAEAGKWENAAKVKKAMRERGVKKVTAYSWVEIDHRVHVFTANDRTHPQTEQIRRK 715

Query: 687 LEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKN 746
           +  LV  M K GY PDT   L +++ + K  +L  HSE+LA+AF L+  P G+ + ++KN
Sbjct: 716 INSLVELMDKEGYKPDTSCTLQNVDEEMKIESLKYHSERLAIAFALINTPEGSPIIIMKN 775

Query: 747 LRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           LR C DCH A K +SK+VGREI VRD  RFHHFRDG CSCGDYW
Sbjct: 776 LRACVDCHAAIKVISKIVGREITVRDSSRFHHFRDGSCSCGDYW 819



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 146/568 (25%), Positives = 259/568 (45%), Gaps = 71/568 (12%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           V A ++ +GF P     N  +    ++ ++  AR LFDE+P  +  +   +++ Y  S N
Sbjct: 33  VDARIVKTGFDPEISRFNFKLKDLVRANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRN 92

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
           +  ARE+F    +  R+ V +  MI  YS N+    A  L+ +M R  VKPD+ TF ++L
Sbjct: 93  LFRARELFE--SMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLL 150

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
           S         K+ +Q+H  +++ G      V N+L+  Y K            +  A ++
Sbjct: 151 SGFD-DTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTC---------CLDIASQL 200

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLML 276
           F EMP +D +S+  M+TGY K  + + A +                        ++M  +
Sbjct: 201 FSEMPTKDSVSFNVMITGYTKYGFREEALKLF----------------------MQMRNM 238

Query: 277 RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
             Q   FT+ +++     S     G+Q+H   ++T    +  + + V NAL+  Y K   
Sbjct: 239 DFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKT----SYVWDIFVANALLDFYSKHDY 294

Query: 337 VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
           ++ A+++F++MPE D VS+N I                               I+G A N
Sbjct: 295 IDLAKNLFDEMPELDGVSYNII-------------------------------ITGYAWN 323

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
           G  E+   LF +++   F   ++ FA  ++  A    L  GRQ HAQ V +   S +  G
Sbjct: 324 GQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVG 383

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
           NAL+ MYA+C   E AN +F  +   +SV W A+I+   Q G    A++++++M +E + 
Sbjct: 384 NALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVH 443

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
            D+ TF + L A  +   V  G++   ++    G+       +  +D+    G   +A +
Sbjct: 444 GDQATFASTLKASANLASVSLGKQLHSSVI-RLGLLSSVFSGSVLVDMYANCGSMKDAIE 502

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNID 604
           V   +P + +   W AL++    +G+ +
Sbjct: 503 VFKEMPDR-NIVCWNALISAYSQNGDAE 529


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 259/716 (36%), Positives = 388/716 (54%), Gaps = 71/716 (9%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
            P++ A  +L+ AY     V  A  +F++ P   RD   +NAM++    N+    A+ L 
Sbjct: 99  HPNVFASGSLVHAYLRFGRVAEAYRVFDEMP--ERDVPAWNAMLSGLCRNTRAADAVTLL 156

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
             M  + V  D  T +SVL  + +++ +    + MH   VK G      V NALI VY K
Sbjct: 157 GRMVGEGVAGDAVTLSSVLP-MCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGK 215

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
                      ++  A  VF  M  RD ++W ++++   +   + AA E   GM E+ GV
Sbjct: 216 L---------GMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMES-GV 265

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                                  D  T  S+ SA A  G     K VH Y+ R       
Sbjct: 266 C---------------------PDVLTLVSLASAVAQCGDELGAKSVHCYVRRRG----- 299

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
                         W  G               D+++ NA++  Y     ID A+ +F+ 
Sbjct: 300 --------------WDVG---------------DIIAGNAMVDMYAKMSKIDAAQKVFDN 330

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR-LEGFKPCDYAFAGAITSCAGLGALEN 436
           + +R+++SW  +I+G  QNG   E +++++ M   EG KP    F   + + + LG L+ 
Sbjct: 331 LPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQ 390

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           G ++HA  + +G +  +     LI +YA+CG +  A  +F  MP   +  WNA+IA LG 
Sbjct: 391 GMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGV 450

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
           HG+GA+A+ L+ QM +E I PD +TF+++L+AC+HAGLV +GR +F+ M   YGI P   
Sbjct: 451 HGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAK 510

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           HY   +D+L RAG+  EA + I S+P KP + +W ALL  CRIHGN+++G  A++ LF+L
Sbjct: 511 HYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFEL 570

Query: 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFL--VDD 674
            P + G YVL+SNMYA +G+WD    VR L+R + ++K PG S +EV   V VF      
Sbjct: 571 DPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVFYSGTQT 630

Query: 675 TAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMK 734
             HP+ + + + L  L+ +M+  GYVPD  FVL D+E D+KE  L+ HSE+LA+AFG++ 
Sbjct: 631 EPHPQHEEIQRGLHDLLAKMKSAGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIIN 690

Query: 735 LPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            P G  + + KNLR+CGDCH+A K++SK+  REI+VRD  RFHHF+DG CSCGD+W
Sbjct: 691 TPPGTPLHIYKNLRVCGDCHSATKYISKITEREIIVRDANRFHHFKDGHCSCGDFW 746



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 151/516 (29%), Positives = 228/516 (44%), Gaps = 92/516 (17%)

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSG---TGLFTSVLNALISVYVKCVSS 201
           ++PD+FTF  ++ A            Q+H   ++ G     +F S   +L+  Y++    
Sbjct: 65  LRPDSFTFPPLVRA----APGPASAAQLHACALRLGLLHPNVFAS--GSLVHAYLRF--- 115

Query: 202 PFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNA 261
                   +  A RVFDEMPERD  +W  M++G  +N     A   L  M    GVA +A
Sbjct: 116 ------GRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGE-GVAGDA 168

Query: 262 LISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
           +                     T +SV+  C   G   L   +H Y +    K      L
Sbjct: 169 V---------------------TLSSVLPMCVVLGDRALALVMHVYAV----KHGLSGEL 203

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
            V NAL+ +Y K G + EA  +F  M  RDLV+WN+I+SA    G +  A  LF  M E 
Sbjct: 204 FVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMME- 262

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG-LGALENGRQL 440
                         +G   + L L S              A A+  C   LGA    + +
Sbjct: 263 --------------SGVCPDVLTLVS-------------LASAVAQCGDELGA----KSV 291

Query: 441 HAQLVHSGYD-SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           H  +   G+D   + AGNA++ MYA+   ++AA  VF+ +P+ D VSWN +I    Q+G 
Sbjct: 292 HCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGL 351

Query: 500 GARAIELYEQMLK-EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG--ED 556
              AI +Y  M   EG+ P + TF++VL A ++ G +++G R    MH    I  G   D
Sbjct: 352 ANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMR----MHA-LSIKTGLNLD 406

Query: 557 HYAR--FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
            Y     IDL  + GK  EA  + + +P + + P W A++AG  +HG+    +    Q+ 
Sbjct: 407 VYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGP-WNAIIAGLGVHGHGAKALSLFSQMQ 465

Query: 615 Q--LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648
           Q  + P H  T+V L    ++ G  D       LM+
Sbjct: 466 QEEIKPDHV-TFVSLLAACSHAGLVDQGRSFFDLMQ 500



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 142/350 (40%), Gaps = 75/350 (21%)

Query: 34  ARSVHAHMISSGFKPREHII-NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           A+SVH ++   G+   + I  N ++D+Y K  K+  A+ +FD +P  D+V+  TLI    
Sbjct: 288 AKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLI---- 343

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMR-RDDVKPDNFT 151
                                        T Y  N   + AI ++ DM   + +KP   T
Sbjct: 344 -----------------------------TGYMQNGLANEAIRIYNDMHNHEGLKPIQGT 374

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           F SVL A + +    +Q M+MH   +K+G  L   V   LI +Y KC           + 
Sbjct: 375 FVSVLPAYSYL-GGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKC---------GKLV 424

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A  +F+ MP R    W  ++ G   + +   A      M +                  
Sbjct: 425 EAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQE----------------- 467

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                 I+ D  T+ S+++AC+++GL   G+     L++T     P         +V + 
Sbjct: 468 -----EIKPDHVTFVSLLAACSHAGLVDQGRSFFD-LMQTVYGIVPIAKH--YTCMVDML 519

Query: 332 WKCGKVNEARDIFNQMPER-DLVSWNAILSAYVSAGLIDEAK----SLFE 376
            + G+++EA +    MP + D   W A+L A    G ++  K    +LFE
Sbjct: 520 GRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFE 569



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 102/248 (41%), Gaps = 23/248 (9%)

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY-DSSLSAGNALITMYARCGVVEAA 472
            +P  + F   + +  G  +     QLHA  +  G    ++ A  +L+  Y R G V  A
Sbjct: 65  LRPDSFTFPPLVRAAPGPAS---AAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEA 121

Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
             VF+ MP  D  +WNAM++ L ++   A A+ L  +M+ EG+  D +T  +VL  C   
Sbjct: 122 YRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMC--- 178

Query: 533 GLVKEGRRYFETMHGPYGIPPGEDHYA----RFIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
             V  G R    +   Y +  G           ID+  + G  +EA  V   +  +    
Sbjct: 179 --VVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALR-DLV 235

Query: 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG-----TYVLLSNMYANLGRWDDAARV 643
            W ++++     G     + AA +LF  M          T V L++  A  G    A  V
Sbjct: 236 TWNSIISANEQGGK----VAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSV 291

Query: 644 RKLMRDRG 651
              +R RG
Sbjct: 292 HCYVRRRG 299


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 253/726 (34%), Positives = 400/726 (55%), Gaps = 73/726 (10%)

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           A+ LFD IPQPD    +TLI+A++        R + N+                      
Sbjct: 85  AQQLFDNIPQPDPTTCSTLISAFTT-------RGLPNE---------------------- 115

Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL 188
               AI L+  +R   +KP N  F +V  A      +  +  ++H   ++ G      + 
Sbjct: 116 ----AIRLYASLRARGIKPHNSVFLTVAKACG-ASGDASRVKEVHDDAIRCGMMSDAFLG 170

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           NALI  Y KC           +  ARRVFD++  +D +SWT+M + YV            
Sbjct: 171 NALIHAYGKC---------KCVEGARRVFDDLVVKDVVSWTSMSSCYVNCGLPRL----- 216

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
            G++    + WN                 ++ +  T +S++ AC+     + G+ +H + 
Sbjct: 217 -GLAVFCEMGWNG----------------VKPNSVTLSSILPACSELKDLKSGRAIHGFA 259

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
           +R         ++ V +ALV+LY +C  V +AR +F+ MP RD+VSWN +L+AY +    
Sbjct: 260 VRHGMIE----NVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREY 315

Query: 369 DEAKSLFEAMRERNL----LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
           D+  +LF  M  + +     +W  +I G  +NG  E+ +++  +M+  GFKP     +  
Sbjct: 316 DKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSF 375

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           + +C+ L +L  G+++H  +        L+   AL+ MYA+CG +  +  VF+ +   D 
Sbjct: 376 LPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDV 435

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
           V+WN MI A   HGNG   + L+E ML+ GI P+ +TF  VLS C+H+ LV+EG + F +
Sbjct: 436 VAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNS 495

Query: 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
           M   + + P  +HYA  +D+  RAG+  EA + I  +P +P+A  W ALL  CR++ N++
Sbjct: 496 MGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVE 555

Query: 605 LGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVD 664
           L   +A +LF++ P++ G YV L N+      W +A+  R LM++RG+ K PGCSW++V 
Sbjct: 556 LAKISANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWLQVG 615

Query: 665 NKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSE 724
           ++VH F+V D  + E+  +Y +L++L  +M+  GY PDT +VL D++ ++K  +L +HSE
Sbjct: 616 DRVHTFVVGDKNNMESDKIYNFLDELGEKMKSAGYKPDTDYVLQDIDQEEKAESLCSHSE 675

Query: 725 KLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKC 784
           KLAVAFG++ L G +++RV KNLRICGDCHNA K++SKVVG  I+VRD  RFHHFR+G C
Sbjct: 676 KLAVAFGILNLNGQSSIRVFKNLRICGDCHNAIKYVSKVVGVTIIVRDSLRFHHFRNGNC 735

Query: 785 SCGDYW 790
           SC D W
Sbjct: 736 SCQDLW 741



 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 143/332 (43%), Gaps = 40/332 (12%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R++H   +  G      + + L+ +Y + L +  AR +FD +P  D+V+   ++ AY  
Sbjct: 252 GRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFT 311

Query: 94  SDNVKLAREMFNKTPLK--MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
           +        +F++   K    D   +NA+I     N     A+E+ R M+    KP+  T
Sbjct: 312 NREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQIT 371

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
            +S L A + I+E  +   ++HC V +       + + AL+ +Y KC           + 
Sbjct: 372 ISSFLPACS-ILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGD---------LN 421

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            +R VFD +  +D ++W TM+   + N      RE L                       
Sbjct: 422 LSRNVFDMICRKDVVAWNTMI---IANAMHGNGREVLLLFES------------------ 460

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE-AKPTPEFSLPVNNALVTL 330
            ML   I+ +  T+T V+S C++S L   G Q+   + R    +P           +V +
Sbjct: 461 -MLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYA----CMVDV 515

Query: 331 YWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
           + + G+++EA +   +MP E    +W A+L A
Sbjct: 516 FSRAGRLHEAYEFIQRMPMEPTASAWGALLGA 547



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 141/330 (42%), Gaps = 22/330 (6%)

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
           +L A ++ G    A+ LF+ + + +  + + +IS     G   E ++L++ +R  G KP 
Sbjct: 72  LLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPH 131

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
           +  F     +C   G     +++H   +  G  S    GNALI  Y +C  VE A  VF+
Sbjct: 132 NSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFD 191

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKE 537
            +   D VSW +M +     G     + ++ +M   G+ P+ +T  ++L AC+    +K 
Sbjct: 192 DLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKS 251

Query: 538 GRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
           GR     +HG    +G+       +  + L  R     +A+ V D +P +     W  +L
Sbjct: 252 GR----AIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVS-WNGVL 306

Query: 595 AGCRIHGNIDLGIQAAEQLFQ--LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
                +   D G+    Q+    +    A    ++     N G+ + A  + + M++ G 
Sbjct: 307 TAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMEN-GQTEKAVEMLRKMQNLGF 365

Query: 653 KKE--------PGCSWIE---VDNKVHVFL 671
           K          P CS +E   +  +VH ++
Sbjct: 366 KPNQITISSFLPACSILESLRMGKEVHCYV 395


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 271/777 (34%), Positives = 412/777 (53%), Gaps = 93/777 (11%)

Query: 26  RNPITSSLARSVHAHMISSGFKPREHIINRLID----------IYCKSLKLVYARTLFDE 75
           R   +S + R     M+SSG +P       ++           I+C +LK  +       
Sbjct: 129 RAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTDGNKIHCLALKFGF------- 181

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
               D+    +LI  Y     V  AR +F++ P   RD   +NAMI+ Y  + N   A+ 
Sbjct: 182 --MWDVYVAASLIHLYCRYGAVVNARILFDEMP--TRDMGSWNAMISGYCQSGNAKEALT 237

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           L   +R      D+ T  S+LSA     +  +  + +H   +K G      V N LI +Y
Sbjct: 238 LSDGLR----AMDSVTVVSLLSACTEAGDFNRG-VTIHSYSIKHGLESELFVSNKLIDLY 292

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            +  S         +   ++VFD M  RD +SW +++  Y  N+                
Sbjct: 293 AEFGS---------LKDCQKVFDRMYVRDLISWNSIIKAYELNE---------------- 327

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                 L +  + +E+++   RIQ D  T  S+ S  +  G  R  + V  + LR     
Sbjct: 328 ----QPLRAILLFQEMRLS--RIQPDCLTLISLASILSQLGEIRACRSVQGFTLR----- 376

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
                                    +  F +    D+   NA++  Y   GL+D A+++F
Sbjct: 377 -------------------------KGWFLE----DITIGNAVVVMYAKLGLVDSARAVF 407

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG--FKPCDYAFAGAITSCAGLGA 433
             +  ++++SW  +ISG AQNG+  E +++++ M  EG         +   + +C+  GA
Sbjct: 408 NWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGA 467

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
           L  G +LH +L+ +G    +  G +L  MY +CG ++ A  +F  +P V+SV WN +IA 
Sbjct: 468 LRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIAC 527

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
            G HG+G +A+ L+++ML EG+ PD ITF+T+LSAC+H+GLV EG   FE M   YGI P
Sbjct: 528 HGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITP 587

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
              HY   +DL  RAG+   A + I S+P +P A IW ALL+ CR+HGN+DLG  A+E L
Sbjct: 588 SLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHL 647

Query: 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVD 673
           F++ P H G +VLLSNMYA+ G+W+    +R +   +G++K PG S +EVDNKV VF   
Sbjct: 648 FEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTG 707

Query: 674 DTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLM 733
           +  HP  + +Y+ L  L  +++ +GYVPD +FVL D+E D+KE+ L +HSE+LA+AF L+
Sbjct: 708 NQTHPMYEEMYRELTALHEKLKMVGYVPDHRFVLQDVEDDEKEHILMSHSERLAMAFALI 767

Query: 734 KLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             P   T+R+ KNLR+CGDCH+  KF+SK+  REI+VRD  RFHHF++G CSCGDYW
Sbjct: 768 TTPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 824



 Score =  192 bits (487), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 167/615 (27%), Positives = 274/615 (44%), Gaps = 99/615 (16%)

Query: 60  YCKSL---KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVF 116
           YC +L   K ++AR +     Q ++     L+  Y    NV LAR  F+   +  RD   
Sbjct: 63  YCTNLQSAKCLHARLVVSNAIQ-NVCISAKLVNLYCYLGNVALARYTFDH--IHNRDVYA 119

Query: 117 YNAMITAYSHNSNGHAAIELFR-DMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
           +N MI+ Y         I  F   M    ++PD  TF SVL A   + +  K    +HC 
Sbjct: 120 WNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTDGNK----IHCL 175

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
            +K G      V  +LI +Y  C     V++R L       FDEMP RD  SW  M++GY
Sbjct: 176 ALKFGFMWDVYVAASLIHLY--CRYGAVVNARIL-------FDEMPTRDMGSWNAMISGY 226

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
            ++     A    DG+                            +D  T  S++SAC  +
Sbjct: 227 CQSGNAKEALTLSDGLR--------------------------AMDSVTVVSLLSACTEA 260

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
           G F  G  +H+Y +    K   E  L V+N L+ LY + G + + + +F++M  RDL+SW
Sbjct: 261 GDFNRGVTIHSYSI----KHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISW 316

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           N+I+ AY               + E+ L                   + LF +MRL   +
Sbjct: 317 NSIIKAY--------------ELNEQPL-----------------RAILLFQEMRLSRIQ 345

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSG-YDSSLSAGNALITMYARCGVVEAANC 474
           P         +  + LG +   R +    +  G +   ++ GNA++ MYA+ G+V++A  
Sbjct: 346 PDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARA 405

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG--ILPDRITFLTVLSACNHA 532
           VFN +PN D +SWN +I+   Q+G  + AIE+Y  M +EG  I  ++ T+++VL AC+ A
Sbjct: 406 VFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQA 465

Query: 533 GLVKEGRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
           G +++G +    +HG     G+           D+  + G+  +A  +   +P   S P 
Sbjct: 466 GALRQGMK----LHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVP- 520

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQ--LMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647
           W  L+A    HG+ +  +   +++    + P H  T+V L +  ++ G  D+     ++M
Sbjct: 521 WNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHI-TFVTLLSACSHSGLVDEGEWCFEMM 579

Query: 648 R-DRGVK---KEPGC 658
           + D G+    K  GC
Sbjct: 580 QTDYGITPSLKHYGC 594



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 122/267 (45%), Gaps = 31/267 (11%)

Query: 329 TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE---------AKSLFEAMR 379
           TL+  C  +  A+ +  +     LV  NAI +  +SA L++          A+  F+ + 
Sbjct: 59  TLFRYCTNLQSAKCLHAR-----LVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIH 113

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL-EGFKPCDYAFAGAITSCAGLGALENGR 438
            R++ +W +MISG  + GY  E ++ FS   L  G +P    F   + +C     + +G 
Sbjct: 114 NRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRN---VTDGN 170

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           ++H   +  G+   +    +LI +Y R G V  A  +F+ MP  D  SWNAMI+   Q G
Sbjct: 171 KIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSG 230

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH- 557
           N   A+ L + +       D +T +++LSAC  AG    G     T+H  Y I  G +  
Sbjct: 231 NAKEALTLSDGLRA----MDSVTVVSLLSACTEAGDFNRG----VTIH-SYSIKHGLESE 281

Query: 558 ---YARFIDLLCRAGKFSEAKDVIDSL 581
                + IDL    G   + + V D +
Sbjct: 282 LFVSNKLIDLYAEFGSLKDCQKVFDRM 308


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 262/717 (36%), Positives = 402/717 (56%), Gaps = 76/717 (10%)

Query: 81  IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
           I A   L   YS + N+     +FNK   K  +   +N++I   + + +   A+  F  M
Sbjct: 88  ICAGAVLRRRYSNNPNLT---TLFNKYVDKT-NVFSWNSVIAELARSGDSVEALRAFSSM 143

Query: 141 RRDDVKPDNFTF-TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           R+  +KP+  TF  ++ S  AL+     +       +      LF S  +AL+ +Y KC 
Sbjct: 144 RKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVS--SALVDMYSKC- 200

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL---DGMSENVG 256
                     +  AR +FDE+  R+ +SWT+M+TGYV+ND  DA R  L   + + E  G
Sbjct: 201 --------GELRDARTLFDEISHRNIVSWTSMITGYVQND--DAHRALLLFKEFLVEESG 250

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
              +                 + +D     SV+SAC+      + + VH +L++      
Sbjct: 251 SEGDG---------------EVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIK------ 289

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
                                        +  E DL   N ++ AY   G +  ++ +F+
Sbjct: 290 -----------------------------RGFEGDLGVENTLMDAYAKCGELGVSRRVFD 320

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY---AFAGAITSCAGLGA 433
            M ER+++SW  +I+  AQNG   E +++F +M  +G    +Y     +  + +CA  G+
Sbjct: 321 GMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDG--EINYNAVTLSAVLLACAHSGS 378

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
              G+ +H Q++  G +S++  G ++I MY +CG VE A   F+ M   +  SW+AM+A 
Sbjct: 379 QRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAG 438

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
            G HG+   A+E++ +M   G+ P+ ITF++VL+AC+HAGL++EG  +F+ M   + + P
Sbjct: 439 YGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEP 498

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
           G +HY   +DLL RAG   EA D+I  +  +P   +W ALL  CR+H N+DLG  +A +L
Sbjct: 499 GVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKL 558

Query: 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVD 673
           F+L P + G YVLLSN+YA+ GRW+D  R+R LM++ G+ K PG S +++  +VHVFLV 
Sbjct: 559 FELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVG 618

Query: 674 DTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLM 733
           D  HP+ + +Y+YLE+L ++++++GYVPD   VLHD+  ++KE  L  HSEKLAVAFG+M
Sbjct: 619 DREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIM 678

Query: 734 KLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
               G T+ ++KNLR+CGDCH A KF+SK+V REIVVRD KRFHHFRDG CSCGDYW
Sbjct: 679 NTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 735



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 119/468 (25%), Positives = 199/468 (42%), Gaps = 93/468 (19%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R  H   +  GF+P   + + L+D+Y K  +L  ARTLFDEI   +IV+ T++I  Y  
Sbjct: 171 GRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQ 230

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
           +D+   A  +F +             ++       +G   +             D     
Sbjct: 231 NDDAHRALLLFKEF------------LVEESGSEGDGEVCV-------------DPIAMV 265

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           SVLSA +  V E+     +H  ++K G      V N L+  Y KC           +G +
Sbjct: 266 SVLSACSR-VSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKC---------GELGVS 315

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           RRVFD M ERD +SW +++  Y +N     + E    M ++  + +NA+           
Sbjct: 316 RRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAV----------- 364

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
                     T ++V+ ACA+SG  RLGK +H  ++    K   E ++ V  +++ +Y K
Sbjct: 365 ----------TLSAVLLACAHSGSQRLGKCIHDQVI----KMGLESNVFVGTSIIDMYCK 410

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
           CGKV  AR  F++M E+++ SW+A                               M++G 
Sbjct: 411 CGKVEMARKAFDRMREKNVKSWSA-------------------------------MVAGY 439

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSS 452
             +G+ +E L++F +M + G KP    F   + +C+  G LE G      + H    +  
Sbjct: 440 GMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPG 499

Query: 453 LSAGNALITMYARCGVV-EAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           +     ++ +  R G + EA + +       D V W A++ A   H N
Sbjct: 500 VEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKN 547



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 148/353 (41%), Gaps = 78/353 (22%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           S+   VH  +I  GF+    + N L+D Y K  +L  +R +FD + + D+++  ++IA Y
Sbjct: 278 SITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVY 337

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPDNF 150
           +                         N M T          ++E+F  M +D ++  +  
Sbjct: 338 AQ------------------------NGMST---------ESMEIFHRMVKDGEINYNAV 364

Query: 151 TFTSVLSALALIVEEE-KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           T ++VL A A    +   +C  +H  V+K G      V  ++I +Y KC           
Sbjct: 365 TLSAVLLACAHSGSQRLGKC--IHDQVIKMGLESNVFVGTSIIDMYCKC---------GK 413

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +  AR+ FD M E++  SW+ M+ GY  + +   A+E L+   E                
Sbjct: 414 VEMARKAFDRMREKNVKSWSAMVAGYGMHGH---AKEALEVFYE---------------- 454

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ-VHAYLLRTEAKPTPEFSLPVNNALV 328
              M M  ++ +  T+ SV++AC+++GL   G     A     + +P  E        +V
Sbjct: 455 ---MNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHY----GCMV 507

Query: 329 TLYWKCGKVNEARDIFNQMPER-DLVSWNAILSAYVSAGLID----EAKSLFE 376
            L  + G + EA D+   M  R D V W A+L A      +D     A+ LFE
Sbjct: 508 DLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFE 560



 Score = 47.8 bits (112), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 37/133 (27%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           +  L + +H  +I  G +    +   +ID+YCK  K+  AR  FD + + ++ + + ++A
Sbjct: 378 SQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVA 437

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA--AIELFRDMRRDDVKP 147
            Y                                     +GHA  A+E+F +M    VKP
Sbjct: 438 GYGM-----------------------------------HGHAKEALEVFYEMNMAGVKP 462

Query: 148 DNFTFTSVLSALA 160
           +  TF SVL+A +
Sbjct: 463 NYITFVSVLAACS 475


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 241/602 (40%), Positives = 355/602 (58%), Gaps = 67/602 (11%)

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           N+LI +Y KC S         +  AR+VFDEM  +D +SWT+++ GY +ND  + A   L
Sbjct: 90  NSLIHLYCKCGS---------VLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLL 140

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
            GM                      L  R + + FT+ S++ A        +G+Q+HA  
Sbjct: 141 PGM----------------------LKGRFKPNGFTFASLLKAAGAHADSGIGRQIHALA 178

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
           ++ +                   W                  D+   +A+L  Y   G++
Sbjct: 179 VKCD-------------------W----------------HEDVYVGSALLDMYARCGMM 203

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
           D A ++F+ +  +N +SW  +ISG A+ G GE  L  F++M   GF+   + ++   +S 
Sbjct: 204 DMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSI 263

Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
           A LGALE G+ +HA ++ S    +  AGN L+ MYA+ G +  A  VF+ + + D V+WN
Sbjct: 264 ARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWN 323

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP 548
            M+ A  Q+G G  A+  +E+M K GI  +++TFL +L+AC+H GLVKEG+RYFE M   
Sbjct: 324 TMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFEMMK-E 382

Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
           Y + P  DH+   + LL RAG  + A   I  +P +P+A +W ALLA CR+H N  +G  
Sbjct: 383 YDLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRMHKNAKVGQF 442

Query: 609 AAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVH 668
           AA+ +F+L P  +G  VLL N+YA+ G+WD AARVR++M+  GVKKEP CSW+E++N VH
Sbjct: 443 AADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRRIMKTTGVKKEPACSWVEMENSVH 502

Query: 669 VFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAV 728
           +F+ +D  HP A+ +YK   Q+  ++RK GYVPD  +VL  ++  ++E  L  HSEKLA+
Sbjct: 503 MFVANDDTHPRAEEIYKMWGQISKKIRKEGYVPDMDYVLLRVDDQEREANLQYHSEKLAL 562

Query: 729 AFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788
           AF L+++P GAT+R++KN+RICGDCH+AFK++SKV GREIVVRD  RFHHF +G CSC D
Sbjct: 563 AFALIEMPAGATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSNGSCSCAD 622

Query: 789 YW 790
           YW
Sbjct: 623 YW 624



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 176/387 (45%), Gaps = 73/387 (18%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           AR VHAH+ SS F     + N LI +YCK   ++ AR +FDE                  
Sbjct: 70  ARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDE------------------ 111

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                          ++ +D V + ++I  Y+ N     AI L   M +   KP+ FTF 
Sbjct: 112 ---------------MRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFA 156

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           S+L A A    +     Q+H   VK        V +AL+ +Y +C          +M  A
Sbjct: 157 SLLKA-AGAHADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARC---------GMMDMA 206

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
             VFD++  ++ +SW  +++G+ +           DG +  +  A             +M
Sbjct: 207 TAVFDKLDSKNGVSWNALISGFARKG---------DGETALMTFA-------------EM 244

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
           L    +   FTY+SV S+ A  G    GK VHA+++++  K T        N L+ +Y K
Sbjct: 245 LRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAF----AGNTLLDMYAK 300

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER----NLLSWTVM 389
            G + +AR +F+++ ++DLV+WN +L+A+   GL  EA S FE MR+     N +++  +
Sbjct: 301 SGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCI 360

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKP 416
           ++  +  G  +EG + F  M+    +P
Sbjct: 361 LTACSHGGLVKEGKRYFEMMKEYDLEP 387



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 153/337 (45%), Gaps = 48/337 (14%)

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
            Y + I+ACA S      ++VHA+L    A         ++N+L+ LY KCG V E    
Sbjct: 53  VYHTFITACAQSKNLEDARKVHAHL----ASSRFAGDAFLDNSLIHLYCKCGSVLE---- 104

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
                                      A+ +F+ MR ++++SWT +I+G AQN   EE +
Sbjct: 105 ---------------------------ARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAI 137

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
            L   M    FKP  + FA  + +         GRQ+HA  V   +   +  G+AL+ MY
Sbjct: 138 GLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAVKCDWHEDVYVGSALLDMY 197

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
           ARCG+++ A  VF+ + + + VSWNA+I+   + G+G  A+  + +ML+ G      T+ 
Sbjct: 198 ARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYS 257

Query: 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA----RFIDLLCRAGKFSEAKDVID 579
           +V S+    G +++G+     M     I   +   A      +D+  ++G   +A+ V D
Sbjct: 258 SVFSSIARLGALEQGKWVHAHM-----IKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFD 312

Query: 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
            +  K     W  +L     +G   LG +A     ++
Sbjct: 313 RVDDK-DLVTWNTMLTAFAQYG---LGKEAVSHFEEM 345



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 133/283 (46%), Gaps = 39/283 (13%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+   + L+  Y+    + +A  +F+K  L  ++ V +NA+I+ ++   +G  A+  F +
Sbjct: 186 DVYVGSALLDMYARCGMMDMATAVFDK--LDSKNGVSWNALISGFARKGDGETALMTFAE 243

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M R+  +  +FT++SV S++A +   E Q   +H  ++KS   +     N L+ +Y K  
Sbjct: 244 MLRNGFEATHFTYSSVFSSIARLGALE-QGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSG 302

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
           S         M  AR+VFD + ++D ++W TM+T + +      A    + M +      
Sbjct: 303 S---------MIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRK------ 347

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
               SG            I L++ T+  +++AC++ GL + GK+    +   + +P  + 
Sbjct: 348 ----SG------------IYLNQVTFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDH 391

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
            + V    V L  + G +N A     +MP E     W A+L+A
Sbjct: 392 FVTV----VALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAA 430



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 4/127 (3%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           VHAHMI S  K      N L+D+Y KS  ++ AR +FD +   D+V   T++ A++    
Sbjct: 275 VHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGL 334

Query: 97  VKLAREMFN---KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
            K A   F    K+ + +    F   ++TA SH          F  M+  D++P+   F 
Sbjct: 335 GKEAVSHFEEMRKSGIYLNQVTFL-CILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHFV 393

Query: 154 SVLSALA 160
           +V++ L 
Sbjct: 394 TVVALLG 400


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/759 (33%), Positives = 400/759 (52%), Gaps = 104/759 (13%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +H+ +I  G++  E I   L+D+Y K    + A  +F  I +PDIV           
Sbjct: 333 GQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVV---------- 382

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                                  ++A+IT          +I+LF  MR  D  P+ +T  
Sbjct: 383 -----------------------WSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTIC 419

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK--CVSSPFVSSRSLMG 211
           S+LSA A      +    +H  V K G     +V NAL+++Y+K  CV            
Sbjct: 420 SLLSA-ATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHD---------- 468

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
              ++++ M +RD +SW   ++G       D            + + ++ L  G++    
Sbjct: 469 -GTKLYESMVDRDLISWNAYLSGLHDCGMYDRP----------LTIFYHMLEEGFIP--- 514

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                    + +T+ S++ +C+       G+QVHA++++                     
Sbjct: 515 ---------NMYTFISILGSCSCLFDVHYGRQVHAHIIK--------------------- 544

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
                        NQ+ + + V   A++  Y     +++A   F  +  R+L +WTV+I+
Sbjct: 545 -------------NQLDDNNFVC-TALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIIT 590

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
             AQ   GE+ L  F QM+ EG KP ++  AG ++ C+ L +LE G+QLH+ +  SG+ S
Sbjct: 591 NYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVS 650

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
            +  G+AL+ MYA+CG +E A  +F  +   D+++WN +I    Q+G G +A+  +  ML
Sbjct: 651 DMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMML 710

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571
            EGI PD +TF  +LSAC+H GLV+EG+ +F +M+  +GI P  DH A  +D+L R GKF
Sbjct: 711 DEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKF 770

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631
            E +D I  +    +A IWE +L   ++H N+ LG +AA +LF+L P    +Y+LLSN++
Sbjct: 771 DELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIF 830

Query: 632 ANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLV 691
           A  GRWDD  RVR LM  +GVKKEPGCSW+E + +VH F+  D +HP+ Q ++  L++L 
Sbjct: 831 ATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELD 890

Query: 692 LEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICG 751
            E+  + YVP T++VLH++   +K+  L  HSE+LA+ F L+       +R+ KNLRIC 
Sbjct: 891 RELASIQYVPKTEYVLHNVGETEKKENLRFHSERLALGFALISTSSEKKIRIFKNLRICR 950

Query: 752 DCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           DCH+  K +S +  +EIVVRD +RFHHF++G CSC D+W
Sbjct: 951 DCHDVMKHISSITNQEIVVRDVRRFHHFKNGACSCNDFW 989



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 132/531 (24%), Positives = 236/531 (44%), Gaps = 114/531 (21%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y+S L+ C  +  +   +A+++H  ++     P  H+   L+++Y K     YAR +  +
Sbjct: 115 YSSMLRECASKRSL--GVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAK 172

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P  D+V+ T LI          L  E F                          + +I 
Sbjct: 173 MPDRDVVSWTALIQG--------LVAEGF-------------------------ANDSIY 199

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM------QMHCTVVKSGTGLFTSVLN 189
           LF++M+ + + P+ FT  + L A +L       CM      QMH    K G  L   V +
Sbjct: 200 LFQEMQNEGIMPNEFTLATGLKACSL-------CMALDLGKQMHAQAFKLGLLLDLFVGS 252

Query: 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD 249
           AL+ +Y KC           +  A ++F  MPE+++++W  ++ GY              
Sbjct: 253 ALVDLYAKC---------GEIELASKMFIGMPEQNDVTWNVLLNGY-------------- 289

Query: 250 GMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
                   A    ++G +     M+ L ++ +EFT T+V+  CANS   + G+ +H+ ++
Sbjct: 290 --------AQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLII 341

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLID 369
           +   +   EF   +   LV +Y KCG   +A  +F  + + D+V W+A+++         
Sbjct: 342 KCGYEGN-EF---IGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITC-------- 389

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
                                  L Q G  EE +KLF  MRL    P  Y     +++  
Sbjct: 390 -----------------------LDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAAT 426

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
             G L+ G+ +HA +   G+++ ++  NAL+TMY + G V     ++ +M + D +SWNA
Sbjct: 427 NTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNA 486

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
            ++ L   G   R + ++  ML+EG +P+  TF+++L +C+    V  GR+
Sbjct: 487 YLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQ 537



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 152/333 (45%), Gaps = 41/333 (12%)

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           Y+S++  CA+     + K +H  +++    P     +    +LV +Y KC     AR + 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWV----SLVNVYAKCRYSAYARLVL 170

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
            +MP+R                               +++SWT +I GL   G+  + + 
Sbjct: 171 AKMPDR-------------------------------DVVSWTALIQGLVAEGFANDSIY 199

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           LF +M+ EG  P ++  A  + +C+   AL+ G+Q+HAQ    G    L  G+AL+ +YA
Sbjct: 200 LFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYA 259

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           +CG +E A+ +F  MP  + V+WN ++    Q G+    ++L+  M++  +  +  T  T
Sbjct: 260 KCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTT 319

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584
           VL  C ++  +K+G +   ++    G    E      +D+  + G   +A  V  ++  K
Sbjct: 320 VLKGCANSKNLKQG-QVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIK-K 377

Query: 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           P   +W AL+      G  +  I    +LF LM
Sbjct: 378 PDIVVWSALITCLDQQGQSEESI----KLFHLM 406



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 104/491 (21%), Positives = 184/491 (37%), Gaps = 102/491 (20%)

Query: 11  TLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYAR 70
           TL N+Y     L    N       +S+HA +   GF+    + N L+ +Y K+       
Sbjct: 411 TLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKN------- 463

Query: 71  TLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNG 130
                                   D  KL   M +      RD + +NA ++        
Sbjct: 464 --------------------GCVHDGTKLYESMVD------RDLISWNAYLSGLHDCGMY 497

Query: 131 HAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNA 190
              + +F  M  +   P+ +TF S+L + + + +      Q+H  ++K+       V  A
Sbjct: 498 DRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYG-RQVHAHIIKNQLDDNNFVCTA 556

Query: 191 LISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDG 250
           LI +Y KC+          +  A   F+ +  RD  +WT ++T Y + +  + A  +   
Sbjct: 557 LIDMYAKCM---------YLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQ 607

Query: 251 MSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
           M +  GV  N                     EFT    +S C++      G+Q+H+ + +
Sbjct: 608 MQQE-GVKPN---------------------EFTLAGCLSGCSSLASLEGGQQLHSMVFK 645

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
           +         + V +ALV +Y KCG + EA  +F  +  RD ++WN I            
Sbjct: 646 SGHVS----DMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTI------------ 689

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
                              I G AQNG G + L  F  M  EG  P    F G +++C+ 
Sbjct: 690 -------------------ICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSH 730

Query: 431 LGALENGRQ-LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWN 488
            G +E G++  ++     G   ++     ++ +  R G  +        M  + +++ W 
Sbjct: 731 QGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWE 790

Query: 489 AMIAALGQHGN 499
            ++ A   H N
Sbjct: 791 TVLGASKMHNN 801


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 264/706 (37%), Positives = 401/706 (56%), Gaps = 74/706 (10%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           LI +Y+   +++ AR++F+K+P    D   +NAMI AYS       A+ L+  M  + V+
Sbjct: 45  LIQSYARLGHIESARQVFDKSPQCGVDA--WNAMIIAYSRRGAMFEALSLYHRMASEGVR 102

Query: 147 PDNFTFTSVLSAL--ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           PD+ T+T VL A   +L +   ++  +     V  G G    V  A++++Y KC      
Sbjct: 103 PDSSTYTVVLKACTRSLDLRSGEETWR---QAVDQGYGDDVFVGAAVLNLYAKC------ 153

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                M  A RVFD+M  RD + WTTM+TG  +N     ARE +D               
Sbjct: 154 ---GKMDEAMRVFDKMGRRDLVCWTTMITGLAQN---GQAREAVD--------------- 192

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
             ++R+  M   R++ D      +I AC   G  ++G  +H Y++R +        + V 
Sbjct: 193 --IYRQ--MHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDII----MDVIVQ 244

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
            +LV +Y K G +  A  +F +M  ++++SW+A                           
Sbjct: 245 TSLVDMYAKNGHLELASCVFRRMLYKNVISWSA--------------------------- 277

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
               +ISG AQNG+    L+L   M+  G+KP   +    + +C+ +G L+ G+ +H  +
Sbjct: 278 ----LISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYI 333

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
           V   +   +S+  A+I MY++CG +  A  VF+ +   DS+SWNA+IA+ G HG+G  A+
Sbjct: 334 VRRLHFDCVSS-TAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEAL 392

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
            L+ QM +  + PD  TF ++LSA +H+GLV++GR +F  M   Y I P E HYA  +DL
Sbjct: 393 SLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDL 452

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624
           L RAG+  EA+++I+S+  +P   IW ALL+GC  HG   +G  AA+++ +L P   G Y
Sbjct: 453 LSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIY 512

Query: 625 VLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVY 684
            L+SN +A   RWD+ A VRK+M+  G+KK PG S +EV+ K+H FL++D +H + + + 
Sbjct: 513 SLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDKSHHQYEEIM 572

Query: 685 KYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVL 744
           + L +L  EM+ +GYVP T+FVLH++E + KE  L  HSE+LA+AFGL+    G  + + 
Sbjct: 573 QVLGKLDYEMKAMGYVPKTEFVLHNLEEEVKERMLCNHSERLAIAFGLLNTGPGTRLLIT 632

Query: 745 KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KNLR+CGDCH A KF+SK+V REIVVRD KRFHHF+DG CSCGDYW
Sbjct: 633 KNLRVCGDCHEATKFISKIVNREIVVRDVKRFHHFKDGVCSCGDYW 678



 Score =  100 bits (250), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 120/276 (43%), Gaps = 39/276 (14%)

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
           N  L+  Y + G +  AR +F++ P+  + +WNA++ AY   G      ++FEA      
Sbjct: 42  NAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRG------AMFEA------ 89

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
                              L L+ +M  EG +P    +   + +C     L +G +   Q
Sbjct: 90  -------------------LSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQ 130

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
            V  GY   +  G A++ +YA+CG ++ A  VF+ M   D V W  MI  L Q+G    A
Sbjct: 131 AVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREA 190

Query: 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG---PYGIPPGEDHYAR 560
           +++Y QM K+ +  D +  L ++ AC   G  K G     ++HG      I         
Sbjct: 191 VDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGL----SIHGYMIRKDIIMDVIVQTS 246

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
            +D+  + G    A  V   + +K +   W AL++G
Sbjct: 247 LVDMYAKNGHLELASCVFRRMLYK-NVISWSALISG 281



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 121/296 (40%), Gaps = 44/296 (14%)

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           ++HA ++ +G     ++   LI  YAR G +E+A  VF+  P     +WNAMI A  + G
Sbjct: 25  KIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRG 84

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
               A+ LY +M  EG+ PD  T+  VL AC  +  ++ G    ET         G+D +
Sbjct: 85  AMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGE---ETWRQAVDQGYGDDVF 141

Query: 559 --ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
             A  ++L  + GK  EA  V D +  +     W  ++ G   +G     +    Q+ + 
Sbjct: 142 VGAAVLNLYAKCGKMDEAMRVFDKMG-RRDLVCWTTMITGLAQNGQAREAVDIYRQMHKK 200

Query: 617 MPHHAGTYVL-LSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVD-- 673
                G  +L L      LG       +   M    ++K+     I +D  V   LVD  
Sbjct: 201 RVEGDGVVMLGLIQACTTLGHSKMGLSIHGYM----IRKD-----IIMDVIVQTSLVDMY 251

Query: 674 -DTAHPE-AQAVYKYL------------------------EQLVLEMRKLGYVPDT 703
               H E A  V++ +                         QLV++M+  GY PD+
Sbjct: 252 AKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDS 307



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 114/290 (39%), Gaps = 76/290 (26%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D V+ T +I  YS   ++  AR +F++  +  RD++ +NA+I +Y  + +G  A+ LF  
Sbjct: 340 DCVSSTAVIDMYSKCGSLSFARTVFDQ--ISFRDSISWNAIIASYGIHGSGEEALSLFLQ 397

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           MR  +VKPD+ TF S+LSA +            H  +V+ G   F+ ++N          
Sbjct: 398 MRETNVKPDHATFASLLSAFS------------HSGLVEKGRYWFSIMVN---------- 435

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA- 258
                             +   +  E  +  M+    +   ++ A+E ++ M    G+A 
Sbjct: 436 ------------------EYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAI 477

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
           W AL+SG                          C N G F +G+     +L         
Sbjct: 478 WVALLSG--------------------------CLNHGKFLIGEMAAKKVLELNPDDPGI 511

Query: 319 FSLPVNNALVTLYWKCGKVNEARDI-----FNQMPERDLVSWNAILSAYV 363
           +SL  N       W   +V E R I       ++P   ++  N  L A++
Sbjct: 512 YSLVSNFFATARRWD--EVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFL 559


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 267/771 (34%), Positives = 409/771 (53%), Gaps = 66/771 (8%)

Query: 38  HAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNV 97
           HA ++ SG +   +I  +LI  Y        A  +   IP P + + ++LI A + +   
Sbjct: 38  HARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLF 97

Query: 98  KLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLS 157
             +  +F++                 +SH         L  D     V P+ F   + LS
Sbjct: 98  SQSIGVFSRM----------------FSHG--------LIPDTH---VLPNLFKVCAELS 130

Query: 158 ALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVF 217
           A        K   Q+HC    SG  +   V  +L  +Y++C           MG AR+VF
Sbjct: 131 AF-------KAGKQIHCVACVSGLDMDAFVQGSLFHMYMRC---------GRMGDARKVF 174

Query: 218 DEMPERDELSWTTMMTGYVKNDYLDAAREFLD-----GMSENVGVAWNALISGY----VH 268
           D M E+D ++ + ++ GY +   L+     L      G+  N+ V+WN ++SG+     H
Sbjct: 175 DRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNI-VSWNGILSGFNRSGYH 233

Query: 269 REL-----KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
           +E      KM  L    D+ T +SV+ +  +S    +G+Q+H Y+++            V
Sbjct: 234 KEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDK----CV 289

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER-- 381
            +A++ +Y K G V     +F++    +    NA ++     GL+D+A  +F   +E+  
Sbjct: 290 ISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKM 349

Query: 382 --NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
             N++SWT +I+G AQNG   E L+LF +M++ G KP        + +C  + AL +GR 
Sbjct: 350 ELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRS 409

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
            H   V       +  G+ALI MYA+CG ++ +  VFN MP  + V WN+++     HG 
Sbjct: 410 THGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGK 469

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA 559
               + ++E +++  + PD I+F ++LSAC   GL  EG +YF  M   YGI P  +HY+
Sbjct: 470 AKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYS 529

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
             ++LL RAGK  EA D+I  +PF+P + +W ALL  CR+  N+DL   AA++LF L P 
Sbjct: 530 CMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPE 589

Query: 620 HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPE 679
           + GTYVL+SN+YA  G W +   +R  M   G+KK PGCSWI+V NKV+  L  D +HP+
Sbjct: 590 NPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNKVYTLLACDKSHPQ 649

Query: 680 AQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGA 739
              + + ++++  EMRK G+ P+  F L D+E  ++E  L  HSEKLAV FGL+  P G 
Sbjct: 650 IDQITEKMDEISEEMRKSGHRPNLDFALQDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGT 709

Query: 740 TVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            ++V+KNLRICGDCH   KF+S   GREI +RD  RFHHF+DG CSCGD+W
Sbjct: 710 PLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/406 (25%), Positives = 191/406 (47%), Gaps = 40/406 (9%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS- 92
            + +H     SG      +   L  +Y +  ++  AR +FD + + D+V  + L+  Y+ 
Sbjct: 135 GKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYAR 194

Query: 93  ---ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
                + V++  EM  K+ ++  + V +N +++ ++ +     A+ +F+ M      PD 
Sbjct: 195 KGCLEEVVRILSEM-EKSGIE-PNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQ 252

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
            T +SVL ++    E      Q+H  V+K G      V++A++ +Y K        S  +
Sbjct: 253 VTVSSVLPSVG-DSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGK--------SGHV 303

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL-----DGMSENVGVAWNALIS 264
            G   ++FDE    +       +TG  +N  +D A E         M  NV V+W ++I+
Sbjct: 304 YGII-KLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNV-VSWTSIIA 361

Query: 265 GYVHR-------EL--KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           G           EL  +M +  ++ +  T  S++ AC N      G+  H + +R     
Sbjct: 362 GCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLD 421

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
                + V +AL+ +Y KCG++  ++ +FN MP ++LV WN++++ Y   G   E  S+F
Sbjct: 422 ----DVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIF 477

Query: 376 EA-MRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKP 416
           E+ MR R   + +S+T ++S   Q G  +EG K F+ M  E G KP
Sbjct: 478 ESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKP 523



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 168/391 (42%), Gaps = 43/391 (10%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           ++ R +H ++I  G    + +I+ ++D+Y KS  +     LFDE    +       I   
Sbjct: 269 NMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGL 328

Query: 92  SASDNVKLAREMFN--KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
           S +  V  A EMF   K      + V + ++I   + N     A+ELFR+M+   VKP+ 
Sbjct: 329 SRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNR 388

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
            T  S+L A   I          H   V+        V +ALI +Y KC           
Sbjct: 389 VTIPSMLPACGNIA-ALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKC---------GR 438

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +  ++ VF+ MP ++ + W ++M GY            + G ++ V   + +L       
Sbjct: 439 IKMSQIVFNMMPTKNLVCWNSLMNGYS-----------MHGKAKEVMSIFESL------- 480

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
               +  R++ D  ++TS++SAC   GL   G + +  ++  E    P   L   + +V 
Sbjct: 481 ----MRTRLKPDFISFTSLLSACGQVGLTDEGWK-YFNMMSEEYGIKPR--LEHYSCMVN 533

Query: 330 LYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLID----EAKSLFEAMRERNLL 384
           L  + GK+ EA D+  ++P E D   W A+L++      +D     A+ LF  +   N  
Sbjct: 534 LLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQKLFH-LEPENPG 592

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           ++ +M +  A  G   E   + ++M   G K
Sbjct: 593 TYVLMSNIYAAKGMWTEVDSIRNKMESLGLK 623


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 264/715 (36%), Positives = 397/715 (55%), Gaps = 75/715 (10%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           DI    +LI  YS     K AR++F++  +  R+ V ++A++  Y H       + LFR+
Sbjct: 60  DITQINSLINLYSKCGQSKCARKLFDR--MLQRNVVSWSALMMGYLHKGEVLEVLGLFRN 117

Query: 140 M-RRDDVKPDNFTFTSVLSALALI--VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           +   D   P+ + FT VLS  A    V+E KQC   H  ++KSG  L   V NALI +Y 
Sbjct: 118 LVSLDSAYPNEYIFTIVLSCCADSGRVKEGKQC---HGYLLKSGLLLHQYVKNALIHMYS 174

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           +C           + +A ++ D +P  D  S+ ++++  V++     A + L  M +   
Sbjct: 175 RCFH---------VDSAMQILDTVPGDDVFSYNSILSALVESGCRGEAAQVLKRMVDEC- 224

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
           V W                     D  TY SV+  CA     +LG Q+HA LL+T     
Sbjct: 225 VIW---------------------DSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLV-- 261

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
             F + V++ L+  Y KCG+V  AR                                 F+
Sbjct: 262 --FDVFVSSTLIDTYGKCGEVLNAR-------------------------------KQFD 288

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
            +R+RN+++WT +++   QNG+ EE L LF++M LE  +P ++ FA  + +CA L AL  
Sbjct: 289 GLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAY 348

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           G  LH ++V SG+ + L  GNALI MY++ G ++++  VF+ M N D ++WNAMI     
Sbjct: 349 GDLLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSH 408

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
           HG G +A+ +++ M+  G  P+ +TF+ VLSAC H  LV+EG  YF+ +   + + PG +
Sbjct: 409 HGLGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLALVQEGFYYFDQIMKKFDVEPGLE 468

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLP-FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
           HY   + LL RAG   EA++ + +    K     W  LL  C IH N +LG Q  E + Q
Sbjct: 469 HYTCMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRTLLNACHIHRNYNLGKQITETVIQ 528

Query: 616 LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
           + PH  GTY LLSNM+A   +WD   ++RKLM++R +KKEPG SW+++ N  HVF+ + +
Sbjct: 529 MDPHDVGTYTLLSNMHAKARKWDGVVKIRKLMKERNIKKEPGASWLDIRNNTHVFVSEGS 588

Query: 676 AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKL 735
            HPE+  +++ ++QL+  ++ LGY PD   VLHD+E +QKE  LS HSEKLA+A+GLMK+
Sbjct: 589 NHPESTQIFEKVQQLLAMIKPLGYAPDVGVVLHDVEDEQKEGYLSHHSEKLALAYGLMKI 648

Query: 736 PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           P    +R++KNLR+C DCH A K +SK   R I+VRD  RFHHFR+G C+C D+W
Sbjct: 649 PPPGPIRIIKNLRMCDDCHIAVKLISKATNRLIIVRDANRFHHFREGLCTCNDHW 703



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 132/260 (50%), Gaps = 44/260 (16%)

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
           SA A S   R GK +HA L+    + + +  +   N+L+ LY KCG+   AR +F++M +
Sbjct: 33  SATAKS--LRFGKTIHAQLV-VRNQTSKDSDITQINSLINLYSKCGQSKCARKLFDRMLQ 89

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
           R++VSW+A++  Y+  G + E   LF     RNL+S                        
Sbjct: 90  RNVVSWSALMMGYLHKGEVLEVLGLF-----RNLVS------------------------ 120

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
            L+   P +Y F   ++ CA  G ++ G+Q H  L+ SG        NALI MY+RC  V
Sbjct: 121 -LDSAYPNEYIFTIVLSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHV 179

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           ++A  + +T+P  D  S+N++++AL + G    A ++ ++M+ E ++ D +T+++VL  C
Sbjct: 180 DSAMQILDTVPGDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLC 239

Query: 530 N-----------HAGLVKEG 538
                       HA L+K G
Sbjct: 240 AQIRDLQLGLQIHAQLLKTG 259



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 138/353 (39%), Gaps = 82/353 (23%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y S L LC     +   L   +HA ++ +G      + + LID Y K  +++ AR  FD 
Sbjct: 232 YVSVLGLCAQIRDL--QLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDG 289

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +   ++VA T ++                                 TAY  N +    + 
Sbjct: 290 LRDRNVVAWTAVL---------------------------------TAYLQNGHFEETLN 316

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LF  M  +D +P+ FTF  +L+A A +V      + +H  +V SG      V NALI++Y
Sbjct: 317 LFTKMELEDTRPNEFTFAVLLNACASLVALAYGDL-LHGRIVMSGFKNHLIVGNALINMY 375

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
                    S    + ++  VF  M  RD ++W  M+ GY  +           G+ +  
Sbjct: 376 ---------SKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHH-----------GLGKQA 415

Query: 256 GVAWNALISG-----YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
            + +  ++S      YV                T+  V+SAC +  L + G     Y  +
Sbjct: 416 LLVFQDMMSAGECPNYV----------------TFIGVLSACVHLALVQEG---FYYFDQ 456

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER--DLVSWNAILSA 361
              K   E  L     +V L  + G ++EA +      +   D+V+W  +L+A
Sbjct: 457 IMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRTLLNA 509


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 271/802 (33%), Positives = 415/802 (51%), Gaps = 119/802 (14%)

Query: 64  LKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITA 123
           +K  +A+ + + +     VA T L+ AYS   +++ AR +F++        +  NAM+  
Sbjct: 48  VKSTHAQIITNSLSTDQFVA-TKLVKAYSDLRSLEAARYVFDQ--FFQPKGLLCNAMLCG 104

Query: 124 YSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGL 183
           Y  +      +ELF  MR  +++ D+ + T  L A A  ++ E   M++  + V+ G   
Sbjct: 105 YLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMG-MEIISSAVEKGM-- 161

Query: 184 FTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDA 243
                                                 E++    ++M++  VK   +  
Sbjct: 162 --------------------------------------EKNRFVGSSMISFLVKFGKIGE 183

Query: 244 AREFLDGMSENVGVAWNALISGYVHRE---------LKMLMLRIQLDEFTYTSVISACAN 294
           A+   DGM     V WN++I GYV             +M    I+    T TS+I AC  
Sbjct: 184 AQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGG 243

Query: 295 SGLFRLGKQVHAYLL---------------------------RTEAKPTPEFSLPVNNAL 327
            G  +LGK +H Y+L                           R      P  +L   NA+
Sbjct: 244 IGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAM 303

Query: 328 VTLYWKCGKVNEARDIFNQMP--------------------------------------E 349
           ++   + G V E+ D+F+++                                       E
Sbjct: 304 ISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRSFE 363

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
            +L+   AI+  Y   G + +A  +F  M++RN+++WT M+ GLAQNG+ E+ L+LF+QM
Sbjct: 364 SNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQM 423

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
           + EG       F   + SCA LG+L+ GR +H  L   G+   +    AL+ MYA+CG +
Sbjct: 424 QEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKI 483

Query: 470 EAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
             A  +F+    + D V WN+MI   G HG+G +A+ +Y +M++EG+ P++ TFL++LSA
Sbjct: 484 NLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSA 543

Query: 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
           C+H+ LV++G   F +M   + I P E HYA  +DLL RAG+F EA+ +I+ +PF+P   
Sbjct: 544 CSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQPGTA 603

Query: 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648
           + EALL+GCR H NI+LGIQ +++L  L   + G Y++LSN+YA   RWD    +R LMR
Sbjct: 604 VLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAEARRWDKVDYIRGLMR 663

Query: 649 DRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLH 708
           +RG+KK PG S +E  N VH F   D +HP  + +Y +LE L   +   GYVPDT  VL 
Sbjct: 664 NRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFLESLRSAVETSGYVPDTSCVLR 723

Query: 709 DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREI 768
           D++ + K   L  HSE+LA+AFGL+  P G+ +R+ KNLR+CGDCH   K++SK+V REI
Sbjct: 724 DVDEEMKVRMLWGHSERLAIAFGLLTTPAGSLIRITKNLRVCGDCHTVTKYISKIVKREI 783

Query: 769 VVRDGKRFHHFRDGKCSCGDYW 790
           +VRD  RFHHF +G+CSCGDYW
Sbjct: 784 IVRDANRFHHFSNGECSCGDYW 805



 Score = 43.1 bits (100), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 6/119 (5%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP-QPDIVARTTLIAAYS 92
            RS+H H+   GF      +  L+D+Y K  K+  A  +F       D+V   ++I  Y 
Sbjct: 451 GRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYG 510

Query: 93  ASDNVKLAREMFNKT---PLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKP 147
              +   A  +++K     LK   T F  ++++A SH+      I LF  M RD +++P
Sbjct: 511 MHGHGYQAVGIYHKMIEEGLKPNQTTFL-SLLSACSHSRLVEQGISLFNSMERDHNIRP 568


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 269/715 (37%), Positives = 385/715 (53%), Gaps = 77/715 (10%)

Query: 80   DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
            DI+   +L+  YS   +V+ A + F  T  +  + V +N M+ AY    N   + E+FR 
Sbjct: 396  DIILEGSLLDLYSKCADVETAHKFFLTT--ETENIVLWNVMLVAYGQLDNLSDSFEIFRQ 453

Query: 140  MRRDDVKPDNFTFTSVL----SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
            M+ + + P+ FT+ S+L    S  AL + E     Q+H  V+K+G  L   V + LI +Y
Sbjct: 454  MQMEGMIPNQFTYPSILRTCTSLGALYLGE-----QIHTHVIKTGFQLNVYVCSVLIDMY 508

Query: 196  VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
             K            +  A R+   +PE D +SWT M+ GYV++D    A +  + M E  
Sbjct: 509  AK---------YGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEM-EYR 558

Query: 256  GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
            G                     IQ D   + S ISACA     R G+Q+HA         
Sbjct: 559  G---------------------IQFDNIGFASAISACAGIRALRQGQQIHA----QSYAA 593

Query: 316  TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
                 L +NNAL++LY +C                               G I EA   F
Sbjct: 594  GFGADLSINNALISLYARC-------------------------------GRIQEAYLAF 622

Query: 376  EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
            E + ++N +SW  ++SGLAQ+GY EE L++F +M     +   + +  AI++ A L  ++
Sbjct: 623  EKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIK 682

Query: 436  NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
             G+Q+H+ ++ +GYDS     N+LI++YA+ G +  A   FN M   + +SWNAMI    
Sbjct: 683  QGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYS 742

Query: 496  QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
            QHG G  A+ L+E+M   GI+P+ +TF+ VLSAC+H GLVKEG  YFE+M   + + P  
Sbjct: 743  QHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKS 802

Query: 556  DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
            +HY   +DLL RAG+   A + I  +P    A IW  LL+ C IH NI++G +AA  L +
Sbjct: 803  EHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLE 862

Query: 616  LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
            L P  + TYVL+SN+YA   +W      RKLM+DRGVKKEPG SWIEV N VH F   D 
Sbjct: 863  LEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGDK 922

Query: 676  AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKL 735
             HP    +Y+Y+  L     ++GYV D+  +L++ E  QK+     HSEKLA+AFGL+ L
Sbjct: 923  LHPLTNQIYEYIGHLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSL 982

Query: 736  PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
                 +RV+KNLR+C DCHN  K++SK+  R I+VRD  RFHHF  G CSC D+W
Sbjct: 983  GNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 156/577 (27%), Positives = 261/577 (45%), Gaps = 84/577 (14%)

Query: 41  MISSGFKPREHIINRLI------DIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           M++ G  P  +    ++      DI    +K V++RT +       +VA   LI  YS +
Sbjct: 150 MLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVA-NLLIDLYSKN 208

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
             ++ A+++FN   + M+D V + AMI+  S N     AI LF DM   ++ P  +  +S
Sbjct: 209 GYIESAKKVFN--CICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSS 266

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           VLSA +  ++  +   Q+HC V+K G    T V N L+++Y +        SR L+ +A 
Sbjct: 267 VLSA-STKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSR--------SRKLI-SAE 316

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
           R+F  M  RD +S+ ++++G V+  + D A E    M  +                    
Sbjct: 317 RIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDC------------------- 357

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
              ++ D  T  S++SACA+ G    G Q+H++ ++          + +  +L+ LY KC
Sbjct: 358 ---LKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSA----DIILEGSLLDLYSKC 410

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
             V  A   F      ++V WN +L AY   G +D     FE                  
Sbjct: 411 ADVETAHKFFLTTETENIVLWNVMLVAY---GQLDNLSDSFE------------------ 449

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
                     +F QM++EG  P  + +   + +C  LGAL  G Q+H  ++ +G+  ++ 
Sbjct: 450 ----------IFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVY 499

Query: 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
             + LI MYA+ G +  A  +   +P  D VSW AMIA   QH   + A++L+E+M   G
Sbjct: 500 VCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRG 559

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHG-PYGIPPGEDHYAR--FIDLLCRAGKF 571
           I  D I F + +SAC     +++G++    +H   Y    G D       I L  R G+ 
Sbjct: 560 IQFDNIGFASAISACAGIRALRQGQQ----IHAQSYAAGFGADLSINNALISLYARCGRI 615

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
            EA    + +  K +   W +L++G    G  +  +Q
Sbjct: 616 QEAYLAFEKIGDKNNIS-WNSLVSGLAQSGYFEEALQ 651



 Score =  197 bits (500), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 152/602 (25%), Positives = 270/602 (44%), Gaps = 112/602 (18%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L   +H  +I  GF    ++ N L+ +Y +S KL+ A  +F                   
Sbjct: 279 LGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIF------------------- 319

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                         + +  RD V YN++I+          A+ELF  M+RD +KPD  T 
Sbjct: 320 --------------STMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITV 365

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            S+LSA A +    K  MQ+H   +K+G      +  +L+ +Y KC           +  
Sbjct: 366 ASLLSACASVGALHKG-MQLHSHAIKAGMSADIILEGSLLDLYSKCAD---------VET 415

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A + F      + + W  M+  Y + D L  + E                         +
Sbjct: 416 AHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFR----------------------Q 453

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           M M  +  ++FTY S++  C + G   LG+Q+H ++++T      + ++ V + L+ +Y 
Sbjct: 454 MQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKT----GFQLNVYVCSVLIDMYA 509

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           K G++  A  I  ++PE D+VSW A+++ YV   +  EA                     
Sbjct: 510 KYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEA--------------------- 548

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
                     L+LF +M   G +  +  FA AI++CAG+ AL  G+Q+HAQ   +G+ + 
Sbjct: 549 ----------LQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGAD 598

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           LS  NALI++YARCG ++ A   F  + + +++SWN++++ L Q G    A++++ +ML+
Sbjct: 599 LSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLR 658

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
                +  T+ + +SA      +K+G++   +M    G     +     I L  ++G  S
Sbjct: 659 TEAEVNMFTYGSAISAAASLANIKQGQQ-IHSMVLKTGYDSEREVSNSLISLYAKSGSIS 717

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ------LMPHHAGTYVL 626
           +A    + +  + +   W A++ G   HG    G++A  +LF+      +MP+H     +
Sbjct: 718 DAWREFNDMS-ERNVISWNAMITGYSQHG---CGMEAL-RLFEEMKVCGIMPNHVTFVGV 772

Query: 627 LS 628
           LS
Sbjct: 773 LS 774



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 130/511 (25%), Positives = 218/511 (42%), Gaps = 86/511 (16%)

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ 171
           R    +N MI  +    +      LFR M  + + P+ +TF  VL          K C+ 
Sbjct: 122 RSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVL----------KACV- 170

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
                   G   F          YVK V S     R+        FD  P    L    +
Sbjct: 171 -------GGDIAFN---------YVKQVHS-----RTFYYG----FDSSP----LVANLL 201

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY----VHRELKMLMLRIQLDE----- 282
           +  Y KN Y+++A++  + +     V W A+ISG     +  E  +L   +   E     
Sbjct: 202 IDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTP 261

Query: 283 FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARD 342
           +  +SV+SA     LF LG+Q+H  +++            V N LV LY +         
Sbjct: 262 YVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSET----YVCNGLVALYSR--------- 308

Query: 343 IFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG 402
                  R L+S                A+ +F  M  R+ +S+  +ISGL Q G+ +  
Sbjct: 309 ------SRKLIS----------------AERIFSTMNSRDGVSYNSLISGLVQQGFSDRA 346

Query: 403 LKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITM 462
           L+LF++M+ +  KP     A  +++CA +GAL  G QLH+  + +G  + +    +L+ +
Sbjct: 347 LELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDL 406

Query: 463 YARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF 522
           Y++C  VE A+  F T    + V WN M+ A GQ  N + + E++ QM  EG++P++ T+
Sbjct: 407 YSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTY 466

Query: 523 LTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582
            ++L  C   G +  G +   T     G        +  ID+  + G+ + A  ++  LP
Sbjct: 467 PSILRTCTSLGALYLGEQ-IHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP 525

Query: 583 FKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
            +     W A++AG   H      +Q  E++
Sbjct: 526 -EDDVVSWTAMIAGYVQHDMFSEALQLFEEM 555



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 123/494 (24%), Positives = 220/494 (44%), Gaps = 109/494 (22%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y S L+ C     +   L   +H H+I +GF+   ++ + LID+Y K  +L  A  +   
Sbjct: 466 YPSILRTCTSLGALY--LGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRR 523

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P+ D+V+ T +IA Y   D       MF++                          A++
Sbjct: 524 LPEDDVVSWTAMIAGYVQHD-------MFSE--------------------------ALQ 550

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LF +M    ++ DN  F S +SA A I    +Q  Q+H     +G G   S+ NALIS+Y
Sbjct: 551 LFEEMEYRGIQFDNIGFASAISACAGI-RALRQGQQIHAQSYAAGFGADLSINNALISLY 609

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            +C           +  A   F+++ +++ +SW ++++G  ++ Y + A +         
Sbjct: 610 ARC---------GRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVF------- 653

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                          ++ML    +++ FTY S ISA A+    + G+Q+H+ +L+T    
Sbjct: 654 ---------------VRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDS 698

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
             E    V+N+L++LY K G +++A   FN M ER+++SWNA+++ Y             
Sbjct: 699 ERE----VSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGY------------- 741

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
                             +Q+G G E L+LF +M++ G  P    F G +++C+ +G ++
Sbjct: 742 ------------------SQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVK 783

Query: 436 NGRQLHAQL--VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIA 492
            G      +  +H     S      ++ +  R G ++ A      MP   D++ W  +++
Sbjct: 784 EGLDYFESMFKIHDLVPKS-EHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLS 842

Query: 493 ALGQHGN---GARA 503
           A   H N   G RA
Sbjct: 843 ACVIHKNIEIGERA 856



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 81/199 (40%), Gaps = 1/199 (0%)

Query: 403 LKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITM 462
           ++L + M   G +     +   +  C   G+L    +LH ++  SG+D      ++L+  
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 463 YARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF 522
           Y R G    A  VF+   N    SWN MI       +  +   L+ +ML EGI P+  TF
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 523 LTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582
             VL AC    +     +   +    YG           IDL  + G    AK V + + 
Sbjct: 163 AGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCIC 222

Query: 583 FKPSAPIWEALLAGCRIHG 601
            K     W A+++G   +G
Sbjct: 223 MKDIVT-WVAMISGLSQNG 240


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 273/795 (34%), Positives = 423/795 (53%), Gaps = 69/795 (8%)

Query: 47  KPREHIINRLIDIYCKSLKL---VYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREM 103
           + RE   NR+  +YC  + L   ++A  +     Q  I     LI  Y+   ++  AR  
Sbjct: 40  EKREIDFNRIF-LYCTKVHLAKQLHALLVVSGKTQS-IFLSAKLINRYAFLGDIPHARLT 97

Query: 104 FNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD-MRRDDVKPDNFTFTSVLSALALI 162
           F++  ++ +D   +N+MI+AY+   + HAA++ F + +    ++ D++TF  V+ A   +
Sbjct: 98  FDQ--IQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNL 155

Query: 163 VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE 222
            +  K    +HC V+K G             VY+      F S    +  A  +FD M  
Sbjct: 156 DDGRK----VHCLVLKLGFE---------CDVYIAASFIHFYSRFGFVSLACNLFDNMMI 202

Query: 223 RDELSWTTMMTGYVKNDYLDAAREFLDGMSEN--------------VGVAWNALISGYVH 268
           RD  +W  M++G+  N  +  A E  D M                 + V  + +ISG V 
Sbjct: 203 RDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISG-VL 261

Query: 269 RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV------------HAYLLRTEAKPT 316
             +  + L ++ D F   ++I+  A  G  R  + +            ++ L   E    
Sbjct: 262 IHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKK 321

Query: 317 PEFSLPVNN---------------ALVTLYWKCGKVNEARDIFNQMPER-----DLVSWN 356
           P  +L V N               +L ++  + G    +R I   +  R     D+   N
Sbjct: 322 PVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGN 381

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL-EGFK 415
           AI+  Y   G ID A+ +FE +  ++++SW  +I+G +QNG   E + ++S MR   G  
Sbjct: 382 AIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAV 441

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P    +   +T+ + LGAL+ G + H QL+ +     +     L+ MY +CG +  A  +
Sbjct: 442 PNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSL 501

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           F  +P+  SVSWNA+I+  G HG G +A++L+++M  EG+ PD ITF+++LSAC+H+GLV
Sbjct: 502 FYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLV 561

Query: 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
            EG+  F+ M   YGI P   HY   +DL  RAG   +A + + ++P +P   +W ALL 
Sbjct: 562 DEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLG 621

Query: 596 GCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKE 655
            CRIH N++L    ++ L ++   + G YVLLSN+YA LG W+    VR L RDRG+KK 
Sbjct: 622 ACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKT 681

Query: 656 PGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQK 715
           PG S IEVD K+ VF   +  HP+ + +Y  L  L  +M+ +GYVPD  FVL D+E D+K
Sbjct: 682 PGWSSIEVDKKIDVFYTGNQTHPKCEEIYSELRNLTAKMKSIGYVPDYNFVLQDVEDDEK 741

Query: 716 EYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKR 775
           E  L++HSE+LA+AFG++  P   T+++ KNLR+CGDCHNA KF+SK+  REI+VRD  R
Sbjct: 742 ENILTSHSERLAMAFGIISTPPKTTLQIFKNLRVCGDCHNATKFISKITEREIIVRDSNR 801

Query: 776 FHHFRDGKCSCGDYW 790
           FHHF+DG CSCGDYW
Sbjct: 802 FHHFKDGVCSCGDYW 816



 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 125/500 (25%), Positives = 211/500 (42%), Gaps = 106/500 (21%)

Query: 17  ASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEI 76
           +S L +C   + I S +   +H + I  G +    + N LI++Y K  +L  A T+F+++
Sbjct: 244 SSLLPICVQLDDIISGVL--IHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQM 301

Query: 77  PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
              DIV+  +L+AA+             NK P+                       A+ +
Sbjct: 302 KVRDIVSWNSLLAAFEQ-----------NKKPV----------------------IALGV 328

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL-NALISVY 195
           +  M    V PD  T  S L+++A  +        +H  V +    L    L NA+I +Y
Sbjct: 329 YNKMHSIGVVPDLLTLVS-LASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMY 387

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            K            + +AR+VF+ +P +D +SW +++TGY +N   + A +    M    
Sbjct: 388 AKL---------GFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYS 438

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           G   N                     + T+ S+++A +  G  + G + H  L+    K 
Sbjct: 439 GAVPN---------------------QGTWVSILTAHSQLGALKQGMKAHGQLI----KN 473

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
              F + V+  LV +Y KCGK+ +A  +F ++P +  VSWNAI+S +   GL        
Sbjct: 474 FLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCH---GL-------- 522

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
                               +GYG + +KLF +M+ EG KP    F   +++C+  G ++
Sbjct: 523 --------------------HGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVD 562

Query: 436 NGRQLHAQLVHSGYD--SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIA 492
            G Q   QL+   Y    SL     ++ ++ R G +E A      MP    VS W A++ 
Sbjct: 563 EG-QWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLG 621

Query: 493 ALGQHGNGARAIELYEQMLK 512
           A   H N      + + +LK
Sbjct: 622 ACRIHENVELVRTVSDHLLK 641


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 267/759 (35%), Positives = 411/759 (54%), Gaps = 44/759 (5%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP----QPDIVARTTLIAAYS 92
           ++  M+  G  P ++    L+    K L L     +   +     + DI    +LI  Y+
Sbjct: 117 LYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYA 176

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
               V L R++F+   +  R+ V + ++I  YS       A+ LF  M    V+P+  T 
Sbjct: 177 ECGKVDLGRKLFDG--MLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTM 234

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKS-GTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             V+SA A +  ++ +  +  C+ +   G  L T ++NAL+ +Y+KC           + 
Sbjct: 235 VCVISACAKL--KDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGD---------IC 283

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
           AAR++FDE   ++ + + T+M+ YV +++       LD                      
Sbjct: 284 AARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILD---------------------- 321

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
           +ML    + D+ T  S I+ACA  G   +GK  HAY+LR   +     S    NA++ +Y
Sbjct: 322 EMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNIS----NAIIDMY 377

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            KCGK   A  +F  MP + +V+WN++++  V  G ++ A  +F+ M ER+L+SW  MI 
Sbjct: 378 MKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIG 437

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
            L Q    EE ++LF +M+ +G         G  ++C  LGAL+  + +   +  +    
Sbjct: 438 ALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHV 497

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
            L  G AL+ M++RCG   +A  VF  M   D  +W A I  +   GN   AIEL+ +ML
Sbjct: 498 DLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEML 557

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571
           ++ + PD + F+ +L+AC+H G V +GR+ F +M   +GI P   HY   +DLL RAG  
Sbjct: 558 EQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLL 617

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631
            EA D+I S+P +P+  +W +LLA CR H N++L   AAE+L QL P   G +VLLSN+Y
Sbjct: 618 EEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIY 677

Query: 632 ANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLV 691
           A+ G+W D ARVR  M+++GV+K PG S IEV   +H F   D +H E   +   LE++ 
Sbjct: 678 ASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIGLMLEEIN 737

Query: 692 LEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICG 751
             + + GYVPDT  VL D++  +KE+ LS HSEKLA+A+GL+    G  +RV+KNLR+C 
Sbjct: 738 CRLSEAGYVPDTTNVLLDVDEQEKEHLLSRHSEKLAMAYGLITTGQGIPIRVVKNLRMCS 797

Query: 752 DCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           DCH+  K +SK+  REI VRD  R+H F++G CSC DYW
Sbjct: 798 DCHSFAKLVSKLYNREITVRDNNRYHFFKEGFCSCRDYW 836



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 153/555 (27%), Positives = 226/555 (40%), Gaps = 106/555 (19%)

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
           +++  AR  F      M     YN +I  Y+    G  AI L+  M    + PD +TF  
Sbjct: 76  ESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPF 135

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           +LSA + I+    + +Q+H  V+K G      V N+LI  Y +C               R
Sbjct: 136 LLSACSKIL-ALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDL---------GR 185

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
           ++FD M ER+ +SWT+++ GY   D    A      M E  GV  N +            
Sbjct: 186 KLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGE-AGVEPNPV------------ 232

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
                    T   VISACA      LGK+V +Y+    ++   E S  + NALV +Y KC
Sbjct: 233 ---------TMVCVISACAKLKDLELGKKVCSYI----SELGMELSTIMVNALVDMYMKC 279

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
           G +  AR IF++   ++LV +N I+S YV                               
Sbjct: 280 GDICAARQIFDECANKNLVMYNTIMSNYV------------------------------- 308

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
            + +  + L +  +M  +G +P        I +CA LG L  G+  HA ++ +G +   +
Sbjct: 309 HHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDN 368

Query: 455 AGNALITMYARCGVVEAANCVFNTMPNV-------------------------------D 483
             NA+I MY +CG  EAA  VF  MPN                                D
Sbjct: 369 ISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERD 428

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG---LVKEGRR 540
            VSWN MI AL Q      AIEL+ +M  +GI  DR+T + + SAC + G   L K    
Sbjct: 429 LVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCT 488

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
           Y E       +  G       +D+  R G  S A  V   +  K     W A +    + 
Sbjct: 489 YIEKNDIHVDLQLG----TALVDMFSRCGDPSSAMHVFKRME-KRDVSAWTAAIGVMAME 543

Query: 601 GNIDLGIQAAEQLFQ 615
           GN +  I+   ++ +
Sbjct: 544 GNTEGAIELFNEMLE 558



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 119/512 (23%), Positives = 216/512 (42%), Gaps = 103/512 (20%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L + V +++   G +    ++N L+D+Y K   +  AR +FDE    ++V   T+++ Y 
Sbjct: 249 LGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYV 308

Query: 93  ----ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPD 148
               ASD + +  EM  K P                                     +PD
Sbjct: 309 HHEWASDVLVILDEMLQKGP-------------------------------------RPD 331

Query: 149 NFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
             T  S ++A A +  +       H  V+++G   + ++ NA+I +Y+KC          
Sbjct: 332 KVTMLSTIAACAQL-GDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKRE------ 384

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
              AA +VF+ MP +  ++W +++ G V++  ++ A    D M E   V+WN +I   V 
Sbjct: 385 ---AACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALV- 440

Query: 269 RELKMLMLRIQL-----------DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
            ++ M    I+L           D  T   + SAC   G   L K V  Y+ + +     
Sbjct: 441 -QVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDI---- 495

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
              L +  ALV ++ +CG  + A  +F +M +RD+ +W                      
Sbjct: 496 HVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAW---------------------- 533

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
                    T  I  +A  G  E  ++LF++M  +  KP D  F   +T+C+  G+++ G
Sbjct: 534 ---------TAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQG 584

Query: 438 RQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALG 495
           RQL   +  + G    +     ++ +  R G++E A  +  +MP   + V W +++AA  
Sbjct: 585 RQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACR 644

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
           +H N   A    E++ +  + P+R+    +LS
Sbjct: 645 KHKNVELAHYAAEKLTQ--LAPERVGIHVLLS 674



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 124/271 (45%), Gaps = 12/271 (4%)

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLV------SWNAILSAYVSAGLI---DEAKSLF 375
           N+   L   C  + E + +   M ++ L+      + N ++++ V  G +   D A++ F
Sbjct: 26  NSSSKLLVNCKTLKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAF 85

Query: 376 --EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
             +     +L  +  +I G A  G G++ + L+ QM + G  P  Y F   +++C+ + A
Sbjct: 86  GDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILA 145

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
           L  G Q+H  ++  G +  +   N+LI  YA CG V+    +F+ M   + VSW ++I  
Sbjct: 146 LSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLING 205

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
                    A+ L+ QM + G+ P+ +T + V+SAC     ++ G++    +    G+  
Sbjct: 206 YSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYI-SELGMEL 264

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584
                   +D+  + G    A+ + D    K
Sbjct: 265 STIMVNALVDMYMKCGDICAARQIFDECANK 295



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 150/333 (45%), Gaps = 42/333 (12%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           S+ +S HA+++ +G +  ++I N +ID+Y K  K   A  +F+ +P   +V   +LIA  
Sbjct: 349 SVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGL 408

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
               +++LA  +F++  +  RD V +N MI A    S    AIELFR+M+   +  D  T
Sbjct: 409 VRDGDMELAWRIFDE--MLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVT 466

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVV-KSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
              + SA   +   +    +  CT + K+   +   +  AL+ ++ +C   P        
Sbjct: 467 MVGIASACGYLGALD--LAKWVCTYIEKNDIHVDLQLGTALVDMFSRC-GDP-------- 515

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
            +A  VF  M +RD  +WT  +         + A E  + M E                 
Sbjct: 516 SSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQ---------------- 559

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVT 329
                 +++ D+  + ++++AC++ G    G+Q+   + +    +P     +     +V 
Sbjct: 560 ------KVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRP----HIVHYGCMVD 609

Query: 330 LYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
           L  + G + EA D+   MP E + V W ++L+A
Sbjct: 610 LLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAA 642


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 238/713 (33%), Positives = 400/713 (56%), Gaps = 40/713 (5%)

Query: 87   LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
            L+  Y+ S N++ A +MF + P    D   +  +I+ ++        + LF  M+   V 
Sbjct: 327  LLNLYAKSQNLEQAHKMFEEIP--QTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVC 384

Query: 147  PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
            P+ FT + VL + +  V + +    +H  ++++G  L   + N+++  YVKC        
Sbjct: 385  PNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKC-------- 436

Query: 207  RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
                G A ++F  M E+D +SW  MM+ Y++   +  + +    +      +WN +I G 
Sbjct: 437  -RCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGL 495

Query: 267  -------VHREL--KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                   V  EL  KM+      ++ T++  +   ++  +  LGKQ+H  +L+       
Sbjct: 496  MRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDG 555

Query: 318  EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
                 V N+L+ +Y KCG++ +A  IF  +P+               + +++  +S  +A
Sbjct: 556  ----FVRNSLIDMYCKCGEMEKASVIFKHLPQE--------------SSMMNSEESCDDA 597

Query: 378  MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
            + E   +SW+ M+SG  QNG  E+ LK FS M     +   +     +++CA  G LE G
Sbjct: 598  VVES--VSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELG 655

Query: 438  RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
            RQ+H  +   G+   +  G+++I MY +CG +  A  +FN   + + V W +MI+    H
Sbjct: 656  RQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALH 715

Query: 498  GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
            G G  A+ L+E M+ EGI P+ ++F+ VL+AC+HAGL++EG +YF  M   YGI PG +H
Sbjct: 716  GQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEH 775

Query: 558  YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
            +   +DL  RAG+ +E K+ I +      + +W + L+ CR+H NI++GI   ++L +L 
Sbjct: 776  FTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELE 835

Query: 618  PHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAH 677
            P  AG Y+L S++ A   RW++AA++R LM+ RGVKK P  SWI++ N+VH F++ D +H
Sbjct: 836  PFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQSWIQLKNQVHSFVMGDRSH 895

Query: 678  PEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPG 737
            P+   +Y YL++L+  ++++GY  D   V+ D+E +Q++  L  HSEKLA+A+G++    
Sbjct: 896  PQDTKIYSYLDELIGRLKEIGYSTDVTPVMQDVEQEQRQVLLGYHSEKLAIAYGIISTAP 955

Query: 738  GATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            G  +RV+KNLR+C DCHN  K+ S+++GREI++RD  RFHHF+ G CSC DYW
Sbjct: 956  GTPIRVMKNLRVCIDCHNFIKYASELLGREIIIRDIHRFHHFKHGHCSCADYW 1008



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 127/498 (25%), Positives = 226/498 (45%), Gaps = 84/498 (16%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
           S + + +H  ++ +G      + N ++D Y K     YA  LF  + + D V+   ++++
Sbjct: 404 SRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSS 463

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
           Y    +++ + ++F + P K  D   +N MI     N     A+EL   M       +  
Sbjct: 464 YLQIGDMQKSVDLFRQLPGK--DAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKL 521

Query: 151 TFTSVLSALALIVEEEKQCM----QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           TF+     +AL++      +    Q+H  V+K G      V N+LI +Y KC        
Sbjct: 522 TFS-----IALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKC-------- 568

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              M  A  +F  +P+      ++MM      D  DA  E          V+W++++SGY
Sbjct: 569 -GEMEKASVIFKHLPQE-----SSMMNSEESCD--DAVVE---------SVSWSSMVSGY 611

Query: 267 VHR-----ELK----MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
           V        LK    M+  ++++D+FT TSV+SACA++G+  LG+QVH Y+     K   
Sbjct: 612 VQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYI----QKIGH 667

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
              + + ++++ +Y KCG +N+A  IFNQ  +R++V W ++                   
Sbjct: 668 GLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSM------------------- 708

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
                       ISG A +G G E ++LF  M  EG  P + +F G +T+C+  G LE G
Sbjct: 709 ------------ISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEG 756

Query: 438 RQLHAQLVHSGYDSSLSAGN--ALITMYARCGVV-EAANCVFNTMPNVDSVSWNAMIAAL 494
            + + +L+   Y     A +   ++ +Y R G + E    + N   +  S  W + +++ 
Sbjct: 757 CK-YFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSC 815

Query: 495 GQHGNGARAIELYEQMLK 512
             H N    I + +++L+
Sbjct: 816 RVHKNIEMGIWVCKKLLE 833



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 122/265 (46%), Gaps = 37/265 (13%)

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           N +L+ Y  +  +++A  +FE + + ++ SWTV+ISG A+ G   + L LF++M+ +G  
Sbjct: 325 NHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVC 384

Query: 416 PCDYAFAGAITSCAG-LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
           P  +  +  + SC+  +     G+ +H  ++ +G D      N+++  Y +C     A  
Sbjct: 385 PNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEK 444

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ------------------------- 509
           +F  M   D+VSWN M+++  Q G+  ++++L+ Q                         
Sbjct: 445 LFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVA 504

Query: 510 ------MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR--F 561
                 M+  G   +++TF   L   +   ++  G++   T     G+   +D + R   
Sbjct: 505 LELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQ-IHTQVLKVGVL--DDGFVRNSL 561

Query: 562 IDLLCRAGKFSEAKDVIDSLPFKPS 586
           ID+ C+ G+  +A  +   LP + S
Sbjct: 562 IDMYCKCGEMEKASVIFKHLPQESS 586



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
           N   LHA+L+ +G       GN L+ +YA+   +E A+ +F  +P  D  SW  +I+   
Sbjct: 306 NSEVLHAKLIKNGCVGI--RGNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFA 363

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
           + G  A  + L+ +M  +G+ P++ T   VL +C+
Sbjct: 364 RIGLSADVLGLFTKMQDQGVCPNQFTLSIVLKSCS 398


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 269/714 (37%), Positives = 384/714 (53%), Gaps = 70/714 (9%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           +I+   +LI  Y     ++LAR +F++  + +R  V YN ++  Y H+      ++LF++
Sbjct: 54  NIIQLNSLINLYVKCSKLRLARYLFDE--MSLRSVVSYNVLMGGYLHSGEHLEVVKLFKN 111

Query: 140 MRRDDVKPDNFTFTSVLSALALI--VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           M     +P+ + FT+VLSA A    V E  QC   H  + K G      V ++L+ +Y K
Sbjct: 112 MVSSLYQPNEYVFTTVLSACAHSGRVFEGMQC---HGFLFKFGLVFHHFVKSSLVHMYSK 168

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C       +  ++ +     D   + D   + +++   V++  L  A E L  M +  GV
Sbjct: 169 CFHVDL--ALQVLESEHGNIDN--DNDAFCYNSVLNALVESGRLGEAVEVLGRMVDE-GV 223

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
            W                     D  TY SV+  C       LG QVHA LL    K   
Sbjct: 224 VW---------------------DSVTYVSVMGLCGQIRDLGLGLQVHAQLL----KGGL 258

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
            F + V + LV ++ KCG V  AR +F                               + 
Sbjct: 259 TFDVFVGSMLVDMFGKCGDVLSARKVF-------------------------------DG 287

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
           ++ RN++ WT +++   QNG  EE L L S M  EG    ++ FA  + + AG+ AL +G
Sbjct: 288 LQNRNVVVWTSLMTAYLQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHG 347

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
             LHA++   G  + +  GNALI MY++CG ++++  VF  M N D ++WNAMI    QH
Sbjct: 348 DLLHARVEKLGIKNRVIVGNALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQH 407

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
           G G +A+ L++ ML  G  P+ +TF+ VLSAC H  LV EG  Y   +   + + PG +H
Sbjct: 408 GLGKQALLLFQDMLSAGECPNHVTFVGVLSACAHLALVNEGFYYLNQLMKHFKVEPGLEH 467

Query: 558 YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           Y   + +LCRAG   EA++ + +   K     W  LL  C IH N +LG + AE + Q+ 
Sbjct: 468 YTCVVAVLCRAGMLEEAENFMRTTQVKWDVVAWRVLLNACNIHRNYNLGTKIAETILQMD 527

Query: 618 PHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAH 677
           P   GTY LLSNMYA    WD    +RK+MR+R VKKEPG SWIE+ N VHVF  D + H
Sbjct: 528 PRDMGTYTLLSNMYAKARSWDSVTMIRKMMRERNVKKEPGVSWIEIRNAVHVFSSDGSNH 587

Query: 678 PEAQAVYKYLEQLVLEM-RKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLP 736
           PE   +Y  + QL+LEM ++LGYVP+ + VLHD+E +QKE  L+ HSEKLA+A+GLMK+P
Sbjct: 588 PECIQIYNKV-QLLLEMIKQLGYVPNIEAVLHDVEDEQKESYLNYHSEKLAIAYGLMKIP 646

Query: 737 GGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             A +RV+KNLRIC DCH A K +SKV  R I+VRD  RFHHFRDG C+C D+W
Sbjct: 647 SPAPIRVIKNLRICEDCHTAVKLISKVTNRLIIVRDASRFHHFRDGTCTCTDHW 700



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 127/264 (48%), Gaps = 29/264 (10%)

Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQ 408
           E +++  N++++ YV    +  A+ LF+ M  R+++S+ V++ G   +G   E +KLF  
Sbjct: 52  EFNIIQLNSLINLYVKCSKLRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKN 111

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
           M    ++P +Y F   +++CA  G +  G Q H  L   G        ++L+ MY++C  
Sbjct: 112 MVSSLYQPNEYVFTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFH 171

Query: 469 VEAANCVF-----NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
           V+ A  V      N   + D+  +N+++ AL + G    A+E+  +M+ EG++ D +T++
Sbjct: 172 VDLALQVLESEHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYV 231

Query: 524 TVLSACN-----------HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
           +V+  C            HA L+K G   F+   G           +  +D+  + G   
Sbjct: 232 SVMGLCGQIRDLGLGLQVHAQLLKGGLT-FDVFVG-----------SMLVDMFGKCGDVL 279

Query: 573 EAKDVIDSLPFKPSAPIWEALLAG 596
            A+ V D L  + +  +W +L+  
Sbjct: 280 SARKVFDGLQNR-NVVVWTSLMTA 302



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 8/113 (7%)

Query: 434 LENGRQLHAQLV--------HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV 485
           L  G+ +H QL+        HS  + ++   N+LI +Y +C  +  A  +F+ M     V
Sbjct: 28  LNFGKSIHTQLLIRNQSSTHHSYREFNIIQLNSLINLYVKCSKLRLARYLFDEMSLRSVV 87

Query: 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG 538
           S+N ++      G     ++L++ M+     P+   F TVLSAC H+G V EG
Sbjct: 88  SYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQPNEYVFTTVLSACAHSGRVFEG 140


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 245/602 (40%), Positives = 357/602 (59%), Gaps = 67/602 (11%)

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           N+LI +Y KC        RS++ A R VFD+M  +D +SWT+++ GY +ND    A   L
Sbjct: 90  NSLIHMYCKC--------RSVLDA-RNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLL 140

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
            G                      ML  R + + FT+ S++ A         G+Q+HA  
Sbjct: 141 PG----------------------MLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHALA 178

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
           ++          + V +AL+ +Y +CGK++ A  +F+++  ++ VSWNA           
Sbjct: 179 VKCGWHE----DVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNA----------- 223

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
                               +ISG A+ G GE  L  F++M   GF+   + ++   +S 
Sbjct: 224 --------------------LISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSI 263

Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
           A LGALE G+ +HA ++ S    +   GN L+ MYA+ G +  A  VF+ + N D V+WN
Sbjct: 264 ARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWN 323

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP 548
           +M+ A  Q+G G  A+  +E+M K G+  ++ITFL +L+AC+H GLVKEG+RYFE M   
Sbjct: 324 SMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFEMMK-E 382

Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
           Y + P  DHY   + LL RAG  + A   I  +P +P+A +W ALLA CR+H N  +G  
Sbjct: 383 YDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQF 442

Query: 609 AAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVH 668
           AA+ +F+L P  +G  VLL N+YA+ G+WD AARVR +M+  GVKKEP CSW+E++N VH
Sbjct: 443 AADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRMMMKTTGVKKEPACSWVEMENSVH 502

Query: 669 VFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAV 728
           +F+ +D  HP+A+ +YK   ++  ++RK GYVPD  +VL  ++  +KE  L  HSEKLA+
Sbjct: 503 MFVANDDTHPQAEEIYKMWGEISKKIRKEGYVPDMDYVLLHVDDQEKEANLQYHSEKLAL 562

Query: 729 AFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788
           AF L+++P GAT+R++KN+RICGDCH+AFK++SKV GREIVVRD  RFHHF  G CSCGD
Sbjct: 563 AFALIEMPAGATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSSGSCSCGD 622

Query: 789 YW 790
           YW
Sbjct: 623 YW 624



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 177/387 (45%), Gaps = 73/387 (18%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           AR +HAH+ SS F     + N LI +YCK   ++ AR +FD+                  
Sbjct: 70  ARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQ------------------ 111

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                          ++ +D V + ++I  Y+ N     AI L   M +   KP+ FTF 
Sbjct: 112 ---------------MRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFA 156

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           S+L A A    +     Q+H   VK G      V +AL+ +Y +C           M  A
Sbjct: 157 SLLKA-AGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARC---------GKMDMA 206

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
             VFD++  ++ +SW  +++G+ +           DG S  +  A             +M
Sbjct: 207 TAVFDKLDSKNGVSWNALISGFARKG---------DGESALMTFA-------------EM 244

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
           L    +   FTY+SV S+ A  G    GK VHA+++++  K T      V N L+ +Y K
Sbjct: 245 LRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAF----VGNTLLDMYAK 300

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER----NLLSWTVM 389
            G + +AR +F+++  +DLV+WN++L+A+   GL  EA S FE MR+     N +++  +
Sbjct: 301 SGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCI 360

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKP 416
           ++  +  G  +EG + F  M+    +P
Sbjct: 361 LTACSHGGLVKEGKRYFEMMKEYDLEP 387



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 124/256 (48%), Gaps = 35/256 (13%)

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
            Y S I+ACA S      +++HA+L  +           ++N+L+ +Y KC  V +AR++
Sbjct: 53  VYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAF----LDNSLIHMYCKCRSVLDARNV 108

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
                                          F+ MR ++++SWT +I+G AQN    E +
Sbjct: 109 -------------------------------FDQMRRKDMVSWTSLIAGYAQNDMPVEAI 137

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
            L   M    FKP  + FA  + +         GRQ+HA  V  G+   +  G+AL+ MY
Sbjct: 138 GLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMY 197

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
           ARCG ++ A  VF+ + + + VSWNA+I+   + G+G  A+  + +ML+ G      T+ 
Sbjct: 198 ARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYS 257

Query: 524 TVLSACNHAGLVKEGR 539
           +V S+    G +++G+
Sbjct: 258 SVFSSIARLGALEQGK 273



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 134/283 (47%), Gaps = 39/283 (13%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+   + L+  Y+    + +A  +F+K  L  ++ V +NA+I+ ++   +G +A+  F +
Sbjct: 186 DVYVGSALLDMYARCGKMDMATAVFDK--LDSKNGVSWNALISGFARKGDGESALMTFAE 243

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M R+  +  +FT++SV S++A +   E Q   +H  V+KS   L   V N L+ +Y K  
Sbjct: 244 MLRNGFEATHFTYSSVFSSIARLGALE-QGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSG 302

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
           S         M  AR+VFD +  +D ++W +M+T + +      A    + M +      
Sbjct: 303 S---------MIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRK------ 347

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
               SG            + L++ T+  +++AC++ GL + GK+    +   + +P  + 
Sbjct: 348 ----SG------------VYLNQITFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDH 391

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
            + V    V L  + G +N A     +MP E     W A+L+A
Sbjct: 392 YVTV----VALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAA 430


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 257/689 (37%), Positives = 397/689 (57%), Gaps = 56/689 (8%)

Query: 113 DTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQM 172
           + + +N M   ++ + +  +A++L+  M    + P+++TF  +L + A + +  K+ +Q+
Sbjct: 27  NLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKL-KASKEGLQI 85

Query: 173 HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMM 232
           H  V+K G  L   V  +LIS+YV+            +  A +VFD    RD +S+T ++
Sbjct: 86  HGHVLKLGYELDLYVHTSLISMYVQ---------NERLEDAHKVFDRSSHRDVVSYTALV 136

Query: 233 TGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR-------EL--KMLMLRIQLDEF 283
           TGY    Y+++AR   D +     V+WNA+ISGYV         EL  +M+   ++ DE 
Sbjct: 137 TGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDES 196

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
           T  +VISA A SG   LG+QVH+++    A      +L + NAL+  Y KCG+       
Sbjct: 197 TMVTVISASARSGSIELGRQVHSWI----ADHGFGSNLKIVNALIDFYSKCGE------- 245

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
                                   ++ A  LF  +  ++++SW ++I G       +E L
Sbjct: 246 ------------------------METACGLFLGLSYKDVISWNILIGGYTHLNLYKEAL 281

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH--SGYDSSLSAGNALIT 461
            LF +M   G  P D      + +CA LGA++ GR +H  +     G  ++ S   +LI 
Sbjct: 282 LLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLID 341

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           MY++CG +EAA+ VFN+M +    +WNAMI     HG    A +++ +M K  I PD IT
Sbjct: 342 MYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDIT 401

Query: 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581
           F+ +LSAC+HAG++  GR  F +M   Y I P  +HY   IDLL  +G F EA+++I ++
Sbjct: 402 FVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTM 461

Query: 582 PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAA 641
             +P   IW +LL  C++HGN++LG + A+ LF++ P++ G+YVLLSN+YA  GRW++ A
Sbjct: 462 TMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVA 521

Query: 642 RVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVP 701
           R+R L+ D+G+KK PGCS IE+D+ VH F++ D  HP  + +Y  LE++ + +++ G+VP
Sbjct: 522 RIRGLLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVP 581

Query: 702 DTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMS 761
           DT  VL +ME + KE AL  HSEKLA+AFGL+       + ++KNLR+C +CH A K +S
Sbjct: 582 DTSEVLQEMEEEFKEGALRHHSEKLAIAFGLISTKPETKLTIVKNLRVCRNCHEATKLIS 641

Query: 762 KVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           K+  REI+ RD  RFHHFRDG CSC DYW
Sbjct: 642 KIYKREIIARDRTRFHHFRDGVCSCNDYW 670



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/422 (27%), Positives = 208/422 (49%), Gaps = 37/422 (8%)

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY-VKNDYLDAAREFLDGMSENVG 256
           C+ SP       +  A  VF+ + E + L W TM  G+ +  D + A + +         
Sbjct: 4   CILSPHFEG---LPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLY--------- 51

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
                         + M+ L +  + +T+  ++ +CA     + G Q+H ++L    K  
Sbjct: 52  --------------VCMISLGLLPNSYTFPFLLKSCAKLKASKEGLQIHGHVL----KLG 93

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
            E  L V+ +L+++Y +  ++ +A  +F++   RD+VS+ A+++ Y S G I+ A+++F+
Sbjct: 94  YELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTGYASRGYIESARNMFD 153

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
            +  ++++SW  MISG  + G  +E L+LF +M     +P +      I++ A  G++E 
Sbjct: 154 EIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIEL 213

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           GRQ+H+ +   G+ S+L   NALI  Y++CG +E A  +F  +   D +SWN +I     
Sbjct: 214 GRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTH 273

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY-GIPPGE 555
                 A+ L+++ML+ G  P+ +T L++L AC H G +  GR     +     G+    
Sbjct: 274 LNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNAS 333

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
                 ID+  + G    A  V +S+  K S P W A++ G  +HG  +    AA  +F 
Sbjct: 334 SLRTSLIDMYSKCGDIEAAHQVFNSMLHK-SLPAWNAMIFGFAMHGRAN----AAFDIFS 388

Query: 616 LM 617
            M
Sbjct: 389 RM 390



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 136/500 (27%), Positives = 220/500 (44%), Gaps = 73/500 (14%)

Query: 12  LANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYART 71
           L N Y     L        S     +H H++  G++   ++   LI +Y ++ +L  A  
Sbjct: 60  LPNSYTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHK 119

Query: 72  LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           +FD     D+V+ T L+  Y++   ++ AR MF++ P+K  D V +NAMI+ Y    N  
Sbjct: 120 VFDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVK--DVVSWNAMISGYVETGNYK 177

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
            A+ELF++M + +V+PD  T  +V+SA A     E    Q+H  +   G G    ++NAL
Sbjct: 178 EALELFKEMMKTNVRPDESTMVTVISASARSGSIELG-RQVHSWIADHGFGSNLKIVNAL 236

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           I  Y KC           M  A  +F  +  +D +SW  ++ GY    +L+  +E L   
Sbjct: 237 IDFYSKCGE---------METACGLFLGLSYKDVISWNILIGGYT---HLNLYKEALLLF 284

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
            E        L SG    ++ ML            S++ ACA+ G   +G+ +H Y+ + 
Sbjct: 285 QE-------MLRSGESPNDVTML------------SILHACAHLGAIDIGRWIHVYIDKR 325

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
               T   SL    +L+ +Y KCG +  A  +FN M  + L +WNA              
Sbjct: 326 LKGVTNASSL--RTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNA-------------- 369

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
                            MI G A +G       +FS+MR    KP D  F G +++C+  
Sbjct: 370 -----------------MIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHA 412

Query: 432 GALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNA 489
           G L+ GR +   + H+      L     +I +    G+ + A  + +TM    D V W +
Sbjct: 413 GMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCS 472

Query: 490 MIAALGQHGNGARAIELYEQ 509
           ++ A   HGN    +EL E+
Sbjct: 473 LLKACKMHGN----VELGEK 488



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 136/308 (44%), Gaps = 47/308 (15%)

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
           A S+FE ++E NLL W  M  G A +      LKL+  M   G  P  Y F   + SCA 
Sbjct: 16  AISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 75

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITM---------------------------- 462
           L A + G Q+H  ++  GY+  L    +LI+M                            
Sbjct: 76  LKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTAL 135

Query: 463 ---YARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
              YA  G +E+A  +F+ +P  D VSWNAMI+   + GN   A+EL+++M+K  + PD 
Sbjct: 136 VTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDE 195

Query: 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579
            T +TV+SA   +G ++ GR+    +   +G           ID   + G+   A  +  
Sbjct: 196 STMVTVISASARSGSIELGRQVHSWI-ADHGFGSNLKIVNALIDFYSKCGEMETACGLFL 254

Query: 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT---YVLLSNMYA---- 632
            L +K     W  L+ G   H N+    + A  LFQ M     +     +LS ++A    
Sbjct: 255 GLSYKDVIS-WNILIGG-YTHLNL---YKEALLLFQEMLRSGESPNDVTMLSILHACAHL 309

Query: 633 ---NLGRW 637
              ++GRW
Sbjct: 310 GAIDIGRW 317


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 253/701 (36%), Positives = 400/701 (57%), Gaps = 37/701 (5%)

Query: 106 KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEE 165
           KT + + +T+   + +  + H       I +F  M    + PD+    +V+   A +   
Sbjct: 37  KTGISLPETIQIFSKLNHFGH------VIRVFSYMLTQGIVPDSRVLPTVIKTCAALSAL 90

Query: 166 EKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDE 225
           +    QMHC  + SG GL + VL++L+ +YV+            +  AR VFD++P+   
Sbjct: 91  QTG-KQMHCFALVSGLGLDSVVLSSLLHMYVQ---------FDHLKDARNVFDKLPQPGV 140

Query: 226 LSWTTMMTGYVKNDYLDAAREFLD-----GMSENVGVAWNALISGY---------VHREL 271
           ++ + +++ + +   +   +E        G+  N+ V+WN +ISG+         V    
Sbjct: 141 VTSSALISRFARKGRVKETKELFYQTRDLGVELNL-VSWNGMISGFNRSGSYLDAVLMFQ 199

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
            M +  ++ D  + +SV+ A  +  +  +G Q+H Y+++    P  +F   V +AL+ +Y
Sbjct: 200 NMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPD-KF---VVSALIDMY 255

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR--ERNLLSWTVM 389
            KC   +E   +FN+M E D+ + NA+++     GL+D A  +F+  +  + N++SWT M
Sbjct: 256 GKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSM 315

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           I+  +QNG   E L+LF +M++EG KP        + +C  + AL +G+  H   + +G 
Sbjct: 316 IASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGI 375

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
            + +  G+ALI MYA+CG + A+   F+ MPN + VSWN+++A    HG    AI ++E 
Sbjct: 376 FNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFEL 435

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
           M + G  PD ++F  VLSAC   GL +EG  YF++M   +G+    +HY+  + LL R+G
Sbjct: 436 MQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSG 495

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629
           +  EA  +I  +PF+P + +W ALL+ CR+H  +DLG  AA+++F+L P + G Y+LLSN
Sbjct: 496 RLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPRNPGNYILLSN 555

Query: 630 MYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQ 689
           +YA+   W +   VR +MR RG+KK PG SWIE+ NKVH+ L  D++HP+   + + L +
Sbjct: 556 IYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLLAGDSSHPQMPQIIEKLAK 615

Query: 690 LVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRI 749
           L +EM+K GYVP T FVL D+E   KE  L  HSEKLAV  GL+    G  ++V+KNLRI
Sbjct: 616 LTVEMKKSGYVPHTDFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTKPGFPLQVIKNLRI 675

Query: 750 CGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           C DCH   KF+S    REI VRD  RFH F+ G CSCGDYW
Sbjct: 676 CRDCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCGDYW 716



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 129/487 (26%), Positives = 226/487 (46%), Gaps = 76/487 (15%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +H   + SG      +++ L+ +Y +   L  AR +FD++PQP +V  + LI+ ++ 
Sbjct: 93  GKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFAR 152

Query: 94  SDNVKLAREMFNKTPLKMRD------TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147
              VK  +E+F +T    RD       V +N MI+ ++ + +   A+ +F++M  + +KP
Sbjct: 153 KGRVKETKELFYQT----RDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKP 208

Query: 148 DNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSR 207
           D  + +SVL A+  + +     +Q+HC V+K G G    V++ALI +Y KC  +  +S  
Sbjct: 209 DGTSVSSVLPAVGDL-DMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSG- 266

Query: 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREF---LDGMSENVGVAWNALIS 264
                   VF+EM E D  +   ++TG  +N  +D A E      GM  NV V+W ++I+
Sbjct: 267 --------VFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNV-VSWTSMIA 317

Query: 265 GYVHRELKMLMLR---------IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                   M  L          ++ +  T   ++ AC N      GK  H + LR     
Sbjct: 318 SCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFN 377

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
                + V +AL+ +Y KCG++  +R  F+ MP R+LVSWN++++ Y   G   EA ++F
Sbjct: 378 ----DVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIF 433

Query: 376 EAM----RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
           E M    ++ + +S+T ++S   Q G  EEG   F  M                      
Sbjct: 434 ELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSR-------------------- 473

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAM 490
                         + G ++ +   + ++T+  R G +E A  +   MP   DS  W A+
Sbjct: 474 --------------NHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGAL 519

Query: 491 IAALGQH 497
           +++   H
Sbjct: 520 LSSCRVH 526


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 264/710 (37%), Positives = 387/710 (54%), Gaps = 73/710 (10%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM-RRD 143
            +L+  Y     + LAR +F+  PL  R+ V +N ++  Y H  N    + LF++M    
Sbjct: 54  NSLVHLYVKCGQLGLARNLFDAMPL--RNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQ 111

Query: 144 DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
           +  P+ + FT+ LSA +      K+ MQ H  + K G      V +AL+ +Y +C     
Sbjct: 112 NACPNEYVFTTALSACSH-GGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRC----- 165

Query: 204 VSSRSLMGAARRVFDEMPER---DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWN 260
               S +  A +V D +P     D  S+ +++   V++   + A E L  M +   VAW 
Sbjct: 166 ----SHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDEC-VAW- 219

Query: 261 ALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
                               D  TY  V+  CA     +LG +VHA LLR        F 
Sbjct: 220 --------------------DHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLM----FD 255

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
             V + L+ +Y KCG+V  AR++F                               + ++ 
Sbjct: 256 EFVGSMLIDMYGKCGEVLNARNVF-------------------------------DGLQN 284

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
           RN++ WT +++   QNGY EE L LF+ M  EG  P +Y FA  + +CAG+ AL +G  L
Sbjct: 285 RNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLL 344

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           HA++   G+ + +   NALI MY++ G ++++  VF  M   D ++WNAMI     HG G
Sbjct: 345 HARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLG 404

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
            +A+++++ M+     P+ +TF+ VLSA +H GLVKEG  Y   +   + I PG +HY  
Sbjct: 405 KQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYTC 464

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
            + LL RAG   EA++ + +   K     W  LL  C +H N DLG + AE + Q+ PH 
Sbjct: 465 MVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPHD 524

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEA 680
            GTY LLSNMYA   RWD    +RKLMR+R +KKEPG SW+++ N +HVFL + + HPE+
Sbjct: 525 VGTYTLLSNMYAKARRWDGVVTIRKLMRERNIKKEPGASWLDIRNDIHVFLSEGSNHPES 584

Query: 681 QAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT 740
             +YK ++QL+  ++ LGYVP+   VLHD+E +QKE  LS HSEKLA+A+GLMK+P  A 
Sbjct: 585 IQIYKKVQQLLALIKPLGYVPNIASVLHDVEDEQKEGYLSYHSEKLALAYGLMKIPSPAP 644

Query: 741 VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +R++KNLR+C DCH A K +SKV  R I+VRD  RFHHFRDG C+C D+W
Sbjct: 645 IRIIKNLRMCDDCHTAVKLISKVTNRLIIVRDANRFHHFRDGSCTCLDHW 694



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 148/310 (47%), Gaps = 40/310 (12%)

Query: 292 CANSGLFRLGKQVHA-YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           CA+      GK +HA +L+R +       S    N+LV LY KCG++  AR++F+ MP R
Sbjct: 22  CADVKWLPFGKAMHAQFLIRNQTSNHSHISHL--NSLVHLYVKCGQLGLARNLFDAMPLR 79

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           ++VSWN +++ Y+  G   E   LF+ M                              + 
Sbjct: 80  NVVSWNVLMAGYLHGGNHLEVLVLFKNM------------------------------VS 109

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
           L+   P +Y F  A+++C+  G ++ G Q H  L   G        +AL+ MY+RC  VE
Sbjct: 110 LQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVE 169

Query: 471 AANCVFNTMPNV---DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
            A  V +T+P     D  S+N+++ AL + G G  A+E+  +M+ E +  D +T++ V+ 
Sbjct: 170 LALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMG 229

Query: 528 ACNHAGLVKEGRR-YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
            C     ++ G R +   + G  G+   E   +  ID+  + G+   A++V D L  + +
Sbjct: 230 LCAQIRDLQLGLRVHARLLRG--GLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNR-N 286

Query: 587 APIWEALLAG 596
             +W AL+  
Sbjct: 287 VVVWTALMTA 296



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 91/396 (22%), Positives = 146/396 (36%), Gaps = 121/396 (30%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
            L   VHA ++  G    E + + LID+Y K  +++ AR +FD                 
Sbjct: 238 QLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFD----------------- 280

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                            L+ R+ V + A++TAY  N     ++ LF  M R+   P+ +T
Sbjct: 281 ----------------GLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYT 324

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           F  +L+A A I       + +H  V K G      V NALI++Y K  S         + 
Sbjct: 325 FAVLLNACAGIAALRHGDL-LHARVEKLGFKNHVIVRNALINMYSKSGS---------ID 374

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
           ++  VF +M  RD ++W                               NA+I GY H  L
Sbjct: 375 SSYNVFTDMIYRDIITW-------------------------------NAMICGYSHHGL 403

Query: 272 KMLMLRIQLD---------EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
               L++  D           T+  V+SA ++ GL + G     +L+R   K  P   L 
Sbjct: 404 GKQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRN-FKIEP--GLE 460

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA-------------------- 361
               +V L  + G ++EA +       + D+V+W  +L+A                    
Sbjct: 461 HYTCMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQM 520

Query: 362 --------------YVSAGLIDEAKSLFEAMRERNL 383
                         Y  A   D   ++ + MRERN+
Sbjct: 521 DPHDVGTYTLLSNMYAKARRWDGVVTIRKLMRERNI 556


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 276/780 (35%), Positives = 429/780 (55%), Gaps = 72/780 (9%)

Query: 52  IINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS----ASDNVKLAREMFNK- 106
           ++N L+++Y K+     A  LF ++P+ D+++ +T+IA Y+    A++ + L  EM  K 
Sbjct: 208 LVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKR 267

Query: 107 ---------TPLK-------------------MRDTVFYNAMITAYSHNSNGHAAIELFR 138
                    + L+                    +D V + A+++ Y+ N   + ++ +FR
Sbjct: 268 FEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKDVVSWVALLSGYAQNGMAYKSMGVFR 327

Query: 139 DMRRDDVKPDNFTFTSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           +M  D ++PD      +L+A + L + ++  C+  H  VV+SG      V  +LI +Y K
Sbjct: 328 NMLSDGIQPDAVAVVKILAASSELGIFQQALCL--HGYVVRSGFNSNVFVGASLIELYSK 385

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C S         +G A ++F  M  RD + W++M+  Y  +     A E  D M + +  
Sbjct: 386 CGS---------LGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMIQVM-- 434

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
               + S Y       + ++ Q+        I++C  +    +  +V A+ +R   +   
Sbjct: 435 --QGITSCY------QISMQPQVQP---PLAITSCTLAT--HIPWKVKAFYMRAHFRWLG 481

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
            F         T  ++   ++++ +IF    + D          YVS   ID A  +FE 
Sbjct: 482 HFW----EIFPTYPFQAADMSKS-NIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFED 536

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD-------YAFAGAITSCAG 430
           +       W VMI G A +G     L+L+S+M  +G KP +        +    + +C  
Sbjct: 537 IPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGN 596

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
           LGAL  G   H+ ++ +G++  +    A++ MY++CG ++ A C+F+     D V W+AM
Sbjct: 597 LGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAM 656

Query: 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
           IA+ G HG+G +AI+L++QM+K G+ P  +TF  VLSAC+H+GL++EG+ YF+ M   + 
Sbjct: 657 IASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFV 716

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
           I     +YA  +DLL RAG+ SEA D+I+++P +P A IW +LL  CRIH N+DL  + A
Sbjct: 717 IARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIA 776

Query: 611 EQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVF 670
           + LF L P HAG +VLLSN+YA   RW++  +VRK+M  RG  K  G S +E DN+VH F
Sbjct: 777 DHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKF 836

Query: 671 LVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAF 730
            V D +HP+ + +Y  LE+L   M+ LGYVP T FVLHD+E + KE ALS HSE+LA+AF
Sbjct: 837 GVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAIAF 896

Query: 731 GLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           GL+    G T+R+ KNLRICGDCHNA K +SK+V R I+VRD  RFH F DG CSCGDYW
Sbjct: 897 GLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDYW 956



 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 115/487 (23%), Positives = 190/487 (39%), Gaps = 114/487 (23%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           Q+H  V K+G    T     L S+Y KC S         + AAR+VFDE P  +   W +
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCAS---------LQAARKVFDETPHPNVHLWNS 72

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
            +  Y +    +        M    G A                      D FT    + 
Sbjct: 73  TLRSYCREKQWEETLRLFHLMICTAGEA---------------------PDNFTIPIALK 111

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           ACA   +  LGK +H +  + +   +  F   V +ALV LY KCG++ EA  +F +    
Sbjct: 112 ACAGLRMLELGKVIHGFAKKNDEIGSDMF---VGSALVELYSKCGQMGEALKVFEEFQRP 168

Query: 351 DLVSW------------------------------------NAILSAYVSAGLIDEAKSL 374
           D V W                                    N++L+ Y   G    A +L
Sbjct: 169 DTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANL 228

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
           F  M E++++SW+ MI+  A N    E L LF +M  + F+P       A+ +CA    L
Sbjct: 229 FSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNL 288

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
           E G+++H   V                                     D VSW A+++  
Sbjct: 289 EEGKKIHKIAVWK-----------------------------------DVVSWVALLSGY 313

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
            Q+G   +++ ++  ML +GI PD +  + +L+A +  G+ ++       +HG Y +  G
Sbjct: 314 AQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQAL----CLHG-YVVRSG 368

Query: 555 EDHY----ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
            +      A  I+L  + G   +A  +   +  +    IW +++A   IHG     ++  
Sbjct: 369 FNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVR-DVVIWSSMIAAYGIHGRGGEALEIF 427

Query: 611 EQLFQLM 617
           +Q+ Q+M
Sbjct: 428 DQMIQVM 434



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 138/631 (21%), Positives = 258/631 (40%), Gaps = 140/631 (22%)

Query: 56  LIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNV------------------ 97
           L+++Y K  ++  A  +F+E  +PD V  T+++  Y  +++                   
Sbjct: 145 LVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCFDG 204

Query: 98  ------------------KLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
                             K+A  +F+K P K  D + ++ MI  Y++N   + A+ LF +
Sbjct: 205 DLPLVNSLLNLYAKTGCEKIAANLFSKMPEK--DVISWSTMIACYANNEAANEALNLFHE 262

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M     +P++ T  S L A A+                                      
Sbjct: 263 MIEKRFEPNSVTVVSALQACAV-------------------------------------- 284

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS-ENVGVA 258
                 SR+L    +++      +D +SW  +++GY +N           GM+ +++GV 
Sbjct: 285 ------SRNL-EEGKKIHKIAVWKDVVSWVALLSGYAQN-----------GMAYKSMGVF 326

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
            N L  G            IQ D      +++A +  G+F+    +H Y++R+       
Sbjct: 327 RNMLSDG------------IQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNS--- 371

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
            ++ V  +L+ LY KCG + +A  +F  M  RD+V W+++++AY   G   EA  +F+ M
Sbjct: 372 -NVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQM 430

Query: 379 RE--RNLLS-WTVMISGLAQNGYGEEGLKLFSQM--RLEGF-KPCDYAFAGAITSCAGLG 432
            +  + + S + + +    Q         L + +  +++ F     + + G         
Sbjct: 431 IQVMQGITSCYQISMQPQVQPPLAITSCTLATHIPWKVKAFYMRAHFRWLGHFWEIFPTY 490

Query: 433 ALENGRQLHAQLVHSG--YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
             +      + +   G  YDS +    A+  MY     ++AA+ VF  +PN  S  WN M
Sbjct: 491 PFQAADMSKSNIFAYGLQYDSRILTKFAI--MYVSFNRIDAASIVFEDIPNPCSFLWNVM 548

Query: 491 IAALGQHGNGARAIELYEQMLKE-------GILPDRITFLTVLSACNHAGLVKEGRRYFE 543
           I      G    ++ELY +M+++       G++P+R++ L+VL AC + G +++G    E
Sbjct: 549 IRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKG----E 604

Query: 544 TMHGPYGIPPGEDH----YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI 599
             H  Y I  G +         +D+  + G    A+ + D    K     W A++A   I
Sbjct: 605 WFHS-YVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGK-DLVCWSAMIASYGI 662

Query: 600 HGNIDLGIQAAEQLFQ--LMPHHAGTYVLLS 628
           HG+    I   +Q+ +  + P H     +LS
Sbjct: 663 HGHGRKAIDLFDQMVKAGVRPSHVTFTCVLS 693



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 35/137 (25%)

Query: 38  HAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNV 97
           H+++I +GF+    +   ++D+Y K   L  AR LFDE    D+V  + +IA+Y      
Sbjct: 607 HSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGI---- 662

Query: 98  KLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLS 157
                                        + +G  AI+LF  M +  V+P + TFT VLS
Sbjct: 663 -----------------------------HGHGRKAIDLFDQMVKAGVRPSHVTFTCVLS 693

Query: 158 ALAL--IVEEEKQCMQM 172
           A +   ++EE K   Q+
Sbjct: 694 ACSHSGLLEEGKMYFQL 710


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 295/899 (32%), Positives = 430/899 (47%), Gaps = 162/899 (18%)

Query: 1   MMMKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIY 60
           M+ KN ++   +   +A  L+ C   N ++      +HA  I+SGF+    I N LID+Y
Sbjct: 154 MLTKNVEFDERI---FAVVLRGCSG-NAVSFRFVEQIHAKTITSGFESSTFICNPLIDLY 209

Query: 61  CKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKM--------- 111
            K+  L  A+ +F+ +   D V+   +I+  S +   + A  +F +  L           
Sbjct: 210 FKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEF 269

Query: 112 --------------RDTVFYNAMITAYSHNSNGHA------------------------- 132
                          +T   NA++T YS + N  +                         
Sbjct: 270 GKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQ 329

Query: 133 ------AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS 186
                 A+ LF+ M  D  KPD  T  S+LSA A  V       Q H   +K+G      
Sbjct: 330 QGYINRALALFKKMNLDCQKPDCVTVASLLSACA-SVGALPNGKQFHSYAIKAGMTSDIV 388

Query: 187 VLNALISVYVKC-----VSSPFVSSRSL--MGAARRVFDEM------PER---------- 223
           V  +L+ +YVKC         F+    L  +  + ++F +M      P +          
Sbjct: 389 VEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTC 448

Query: 224 ---------DELSWTTMMTGYVKNDY--------------LDAAREFLDGMSENVGVAWN 260
                    +++    + TG+  N Y              LD A +    + EN  V+W 
Sbjct: 449 TTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWT 508

Query: 261 ALISGYVHRE---------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
           A+I+GY   +          +M    I+ D   + S ISACA       G+Q+HA    +
Sbjct: 509 AMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLS 568

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
                    L + NALV+LY +CGKV EA   F+Q+  +D VSWN+++S +  +G     
Sbjct: 569 GYSD----DLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSG----- 619

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
                                     Y EE L +F+QM   G +   + F  A+++ A +
Sbjct: 620 --------------------------YFEEALNIFAQMNKAGLEINSFTFGSAVSAAANI 653

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
             +  G+Q+H  +  +GYDS     NALIT+YA+CG              +D +SWN+MI
Sbjct: 654 ANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGT-------------IDDISWNSMI 700

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
               QHG G  A++L+E M +  +LP+ +TF+ VLSAC+H GLV EG  YF +M   + +
Sbjct: 701 TGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNL 760

Query: 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611
            P  +HYA  +DLL R+G  S AK  ++ +P +P A +W  LL+ C +H NID+G  AA 
Sbjct: 761 VPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAAS 820

Query: 612 QLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFL 671
            L +L P  + TYVL+SNMYA  G+WD   R R++M+DRGVKKEPG SW+EVDN VH F 
Sbjct: 821 HLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAFF 880

Query: 672 VDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFG 731
             D  HP A  +Y+YL  L     + GYVP    +L D E  QK+     HSE+LA+AFG
Sbjct: 881 AGDQNHPRADMIYEYLRGLDFRAAENGYVPRCNSLLSDAEIRQKDPTEIIHSERLAIAFG 940

Query: 732 LMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           L+ L     + V KNLR+C DCHN  K +SK+  R I+VRD  RFHHF+ G CSC DYW
Sbjct: 941 LLSLTSSTPLYVFKNLRVCEDCHNWIKHVSKITDRVIIVRDSYRFHHFKVGSCSCKDYW 999



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 156/684 (22%), Positives = 278/684 (40%), Gaps = 127/684 (18%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           LI  Y A  ++  A  +F++ P+  R    +N +   +           LFR M   +V+
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPI--RSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVE 160

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
            D   F  VL   +      +   Q+H   + SG    T + N LI +Y K         
Sbjct: 161 FDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFK--------- 211

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
                                          N +L +A++  + +     V+W A+ISG 
Sbjct: 212 -------------------------------NGFLSSAKKVFENLKARDSVSWVAMISGL 240

Query: 267 VHR--ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
                E + ++L  Q+       V+SAC     F  GKQ+H  +L+            V 
Sbjct: 241 SQNGYEEEAMLLFCQI-------VLSACTKVEFFEFGKQLHGLVLKQGFSSETY----VC 289

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM----RE 380
           NALVTLY + G ++ A  IF+ M +RD VS+N+++S     G I+ A +LF+ M    ++
Sbjct: 290 NALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQK 349

Query: 381 RNLLSWTVMISGLAQNG------------------------------------------- 397
            + ++   ++S  A  G                                           
Sbjct: 350 PDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEF 409

Query: 398 ---YGE-----EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
              YG+     +  ++F+QM++EG  P  + +   + +C  LGA + G Q+H Q++ +G+
Sbjct: 410 FLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGF 469

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
             ++   + LI MYA+ G ++ A  +F  +   D VSW AMIA   QH     A+ L+++
Sbjct: 470 QFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKE 529

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA---RFIDLLC 566
           M  +GI  D I F + +SAC     + +GR+    +H    +    D  +     + L  
Sbjct: 530 MQDQGIKSDNIGFASAISACAGIQALDQGRQ----IHAQSCLSGYSDDLSIGNALVSLYA 585

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL-MPHHAGTYV 625
           R GK  EA    D +  K +   W +L++G    G  +  +    Q+ +  +  ++ T+ 
Sbjct: 586 RCGKVREAYAAFDQIYAKDNVS-WNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFG 644

Query: 626 LLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDD-------TAHP 678
              +  AN+       ++  ++R  G   E   S   +        +DD       T + 
Sbjct: 645 SAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDDISWNSMITGYS 704

Query: 679 EAQAVYKYLEQLVLEMRKLGYVPD 702
           +    ++ L +L  +M++L  +P+
Sbjct: 705 QHGCGFEAL-KLFEDMKQLDVLPN 727



 Score = 42.4 bits (98), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 59/153 (38%), Gaps = 7/153 (4%)

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
           S   G  LI  Y   G +  A  VF+ MP      WN +           R   L+ +ML
Sbjct: 96  SFYDGLKLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRML 155

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY---GIPPGEDHYARFIDLLCRA 568
            + +  D   F  VL  C+   +     R+ E +H      G           IDL  + 
Sbjct: 156 TKNVEFDERIFAVVLRGCSGNAV---SFRFVEQIHAKTITSGFESSTFICNPLIDLYFKN 212

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
           G  S AK V ++L  + S   W A+++G   +G
Sbjct: 213 GFLSSAKKVFENLKARDSVS-WVAMISGLSQNG 244


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 265/715 (37%), Positives = 384/715 (53%), Gaps = 73/715 (10%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
             D    T LI AYS   NV +AR +F+    K  D V +  M+  Y+ N     +++LF
Sbjct: 168 HADAFVGTALIDAYSVRGNVDVARHVFDDICCK--DMVSWTGMVACYAENCFYEESLQLF 225

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKS--GTGLFTSVLNALISVY 195
             MR    KP+NFT +  L +  L +E       +H   +K      LF  +  AL+ +Y
Sbjct: 226 NQMRIMGYKPNNFTISGALKS-CLGLEAFNVGKSVHGCALKGCYDHDLFVGI--ALLELY 282

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            K  S   +        A+R+F+EMP+ D + W+ M+  Y ++D    ++E LD      
Sbjct: 283 AK--SGEIID-------AQRLFEEMPKTDLIPWSLMIARYAQSD---RSKEALDLF---- 326

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                          L+M    +  + FT+ SV+ ACA+S    LGKQ+H+ +L+     
Sbjct: 327 ---------------LRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLK----- 366

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
              F L  +N  V+                          NAI+  Y   G I+ +  LF
Sbjct: 367 ---FGLN-SNVFVS--------------------------NAIMDVYAKCGEIENSMKLF 396

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
           E + +RN ++W  +I G  Q G GE  + LF+ M     +P +  ++  + + A L ALE
Sbjct: 397 EELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALE 456

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            G Q+H+  + + Y+      N+LI MYA+CG +  A   F+ M   D VSWNAMI    
Sbjct: 457 PGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYS 516

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
            HG    A+ L++ M      P+++TF+ VLSAC++AGL+ +G+ +FE+M   Y I P  
Sbjct: 517 MHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCI 576

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
           +HY   + LL R G+F EA  +I  + ++PS  +W ALL  C IH  +DLG   A+ + +
Sbjct: 577 EHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLE 636

Query: 616 LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
           + PH   T+VLLSNMYA  GRWD+ A VRK M+ + V+KEPG SW+E    VH F V DT
Sbjct: 637 MEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVVHYFSVGDT 696

Query: 676 AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKL 735
           +HP+ + +   LE L  + R  GYVPD   VL D++ D+KE  L  HSE+LA+A+GL++ 
Sbjct: 697 SHPDIKLICAMLEWLNKKTRDAGYVPDCNAVLLDVQDDEKERHLWVHSERLALAYGLIRT 756

Query: 736 PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           P   ++R++KNLRIC DCH   K +SKVV REIV+RD  RFHHFR G CSCGDYW
Sbjct: 757 PLSCSIRIIKNLRICIDCHTVMKLISKVVQREIVIRDINRFHHFRHGVCSCGDYW 811



 Score =  191 bits (486), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 155/611 (25%), Positives = 271/611 (44%), Gaps = 115/611 (18%)

Query: 13  ANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTL 72
           ++ YA  LQ    RN       + +H H++  G        N L++ Y +S  L  A  L
Sbjct: 34  SHSYAHMLQQI-IRNGADPIAGKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKL 92

Query: 73  FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
           FDE+PQ + ++  TL   YS                   RD  F+ A+          H 
Sbjct: 93  FDEMPQTNTISFVTLAQGYS-------------------RDHQFHQAL----------HF 123

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
            + +F++    +V P  F FT++L  L + ++    C  +H  V K G      V  ALI
Sbjct: 124 ILRIFKEGH--EVNP--FVFTTLLK-LLVSMDLAHLCWTLHACVYKLGHHADAFVGTALI 178

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
             Y         S R  +  AR VFD++  +D +SWT M+  Y +N + + + +  + M 
Sbjct: 179 DAY---------SVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMR 229

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
                     I GY            + + FT +  + +C     F +GK VH   L   
Sbjct: 230 ----------IMGY------------KPNNFTISGALKSCLGLEAFNVGKSVHGCAL--- 264

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
            K   +  L V  AL+ LY K G++ +A+ +F +MP+ DL+ W+ +++ Y          
Sbjct: 265 -KGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARY---------- 313

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
                                AQ+   +E L LF +MR     P ++ FA  + +CA   
Sbjct: 314 ---------------------AQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSV 352

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
           +L+ G+Q+H+ ++  G +S++   NA++ +YA+CG +E +  +F  +P+ + V+WN +I 
Sbjct: 353 SLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIV 412

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY----FETMHGP 548
              Q G+G RA+ L+  ML+  + P  +T+ +VL A      ++ G +      +TM+  
Sbjct: 413 GYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNK 472

Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
             +          ID+  + G+ ++A+   D +  +     W A++ G  +HG   + ++
Sbjct: 473 DTVVANS-----LIDMYAKCGRINDARLTFDKMNKRDEVS-WNAMICGYSMHG---MSME 523

Query: 609 AAEQLFQLMPH 619
           A   LF +M H
Sbjct: 524 AL-NLFDMMQH 533


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 259/706 (36%), Positives = 385/706 (54%), Gaps = 69/706 (9%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           T LI AYS S  V +ARE+F++  +  +D V +  MI +Y+ N     A+E F  MR   
Sbjct: 85  TALIDAYSVSGCVSMAREVFDE--ISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAG 142

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
            KP+NFTF  VL A  L ++       +HC+V+K+       V   L+ +Y +C  +   
Sbjct: 143 FKPNNFTFAGVLKA-CLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDND-- 199

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                   A R F +MP+ D + W+ M++ + ++   + A E    M     +       
Sbjct: 200 -------DAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIP------ 246

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
                           ++FT++SV+ A A+     L K +H + L+     T  F   V+
Sbjct: 247 ----------------NQFTFSSVLQASADIESLDLSKTIHGHALKA-GLSTDVF---VS 286

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
           NAL+  Y KCG + ++ ++F  + +R+ VSWN I+ +YV                     
Sbjct: 287 NALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYV--------------------- 325

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
                     Q G GE  L LFS M     +  +  ++  + +CA L ALE G Q+H   
Sbjct: 326 ----------QLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLT 375

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
             + Y   ++ GNALI MYA+CG ++ A  +F+ +   D VSWNA+I     HG G  AI
Sbjct: 376 AKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAI 435

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
           +++  M +    PD +TF+ VLSAC++ G + EG++YF +M   YGI P  +HY   + L
Sbjct: 436 KMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWL 495

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624
           + R+G   +A   I+ +PF+PS  IW ALL  C IH +++LG  +A+++ +L P    ++
Sbjct: 496 MGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASH 555

Query: 625 VLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVY 684
           VLLSN+YA   RW + A VRK M+ +GVKKEPG SWIE    VH F V DT+H + + + 
Sbjct: 556 VLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTVADTSHADLKLIN 615

Query: 685 KYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVL 744
             LE L ++ RK GY P    VL D+E D+KE  L  HSE+LA+AFGL+++P G  +R++
Sbjct: 616 GMLEFLNMKTRKAGYSPQLNAVLLDVEDDEKERLLWLHSERLALAFGLVRMPAGCPIRII 675

Query: 745 KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KNLRIC DCH+  K +SK+VGR+I+VRD  RFHHF +G CSC DYW
Sbjct: 676 KNLRICVDCHSVIKLISKIVGRDIIVRDMNRFHHFENGSCSCADYW 721



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 146/558 (26%), Positives = 255/558 (45%), Gaps = 83/558 (14%)

Query: 103 MFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALI 162
           +F++ P   R+TV +  +I  Y+ ++    A ELF  +  +  + + F FT+VL  L + 
Sbjct: 2   VFDEMP--ERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLK-LLVS 58

Query: 163 VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE 222
           +E  +    +H  V+K G G  T +  ALI  Y         S    +  AR VFDE+  
Sbjct: 59  MEWAELGRIVHGCVLKVGYGSNTFIGTALIDAY---------SVSGCVSMAREVFDEISS 109

Query: 223 RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDE 282
           +D +SWT M+  Y +ND    A EF   M           ++G+            + + 
Sbjct: 110 KDMVSWTGMIASYAENDCFSEALEFFSQMR----------VAGF------------KPNN 147

Query: 283 FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARD 342
           FT+  V+ AC     F  GK VH  +L+T      E  L V   L+ LY +CG  ++A  
Sbjct: 148 FTFAGVLKACLGLQNFDAGKTVHCSVLKTNY----ERDLYVGVGLLELYTRCGDNDDAWR 203

Query: 343 IFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG 402
            F  MP+ D++ W+ ++S +                               AQ+G  E+ 
Sbjct: 204 AFGDMPKNDVIPWSFMISRF-------------------------------AQSGQSEKA 232

Query: 403 LKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITM 462
           L++F QMR     P  + F+  + + A + +L+  + +H   + +G  + +   NAL+  
Sbjct: 233 LEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMAC 292

Query: 463 YARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF 522
           YA+CG +E +  +F  + + + VSWN +I +  Q G+G RA+ L+  ML+  +    +T+
Sbjct: 293 YAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTY 352

Query: 523 LTVLSACNHAGLVKEGRR-YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581
            ++L AC     ++ G + +  T    YG      +    ID+  + G   +A+ + D L
Sbjct: 353 SSILRACATLAALELGLQVHCLTAKTIYGQDVAVGN--ALIDMYAKCGSIKDARFMFDML 410

Query: 582 PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG-----TYVLLSNMYANLGR 636
             +     W A++ G  +HG   LG++A  ++F LM          T+V + +  +N GR
Sbjct: 411 DLRDKVS-WNAIICGYSMHG---LGVEAI-KMFNLMKETKCKPDELTFVGVLSACSNTGR 465

Query: 637 WDDAARVRKLMR-DRGVK 653
            D+  +    M+ D G++
Sbjct: 466 LDEGKQYFTSMKQDYGIE 483



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 134/539 (24%), Positives = 212/539 (39%), Gaps = 137/539 (25%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
           + L R VH  ++  G+     I   LID Y  S  +  AR +FDEI   D+V+ T +IA+
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 91  YSASDNVKLAREMFNK----------------------------------TPLKM---RD 113
           Y+ +D    A E F++                                  + LK    RD
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERD 181

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDD----------------------------- 144
                 ++  Y+   +   A   F DM ++D                             
Sbjct: 182 LYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRR 241

Query: 145 --VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSP 202
             V P+ FTF+SVL A A I E       +H   +K+G      V NAL++ Y KC    
Sbjct: 242 AFVIPNQFTFSSVLQASADI-ESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKC---- 296

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL 262
                  +  +  +F+ + +R+++SW T++  YV+    D  R               +L
Sbjct: 297 -----GCIEQSMELFEALSDRNDVSWNTIIVSYVQLG--DGERAL-------------SL 336

Query: 263 ISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
            S        ML  ++Q  E TY+S++ ACA      LG QVH       AK      + 
Sbjct: 337 FS-------NMLRYQVQATEVTYSSILRACATLAALELGLQVHCL----TAKTIYGQDVA 385

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
           V NAL+ +Y KCG + +AR +F+ +  RD VSWNAI+  Y   GL               
Sbjct: 386 VGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGL--------------- 430

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
                           G E +K+F+ M+    KP +  F G +++C+  G L+ G+Q   
Sbjct: 431 ----------------GVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFT 474

Query: 443 QLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGN 499
            +    G +  +     ++ +  R G ++ A      +P   SV  W A++ A   H +
Sbjct: 475 SMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHND 533


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 238/604 (39%), Positives = 357/604 (59%), Gaps = 67/604 (11%)

Query: 187 VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAARE 246
           +LN+LI +Y KC           +  AR VFD +P RD +SWT ++TGY +ND    A  
Sbjct: 99  LLNSLIHMYCKC---------GAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALG 149

Query: 247 FLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
            L                        ML  R +   FT+TS + A    G   +G+Q+HA
Sbjct: 150 LLP----------------------DMLRARFRPSGFTFTSFLKAAGACGGRGIGEQMHA 187

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366
             +    K   +  + V +AL+ +Y +C +++ A  +F+ +  ++ VSWNA         
Sbjct: 188 LAV----KYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNA--------- 234

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
                                 +I+G A+ G GE  L  F++M+  GF    + ++   +
Sbjct: 235 ----------------------LIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFS 272

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
           + A +GALE GR +HA ++ SG   +    N ++ MYA+ G +  A  VF+ +   D V+
Sbjct: 273 ALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVT 332

Query: 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546
           WN M+ A  Q+G G  A+  +E++ K GI  ++ITFL+VL+AC+H GLVKEG++YF+ M 
Sbjct: 333 WNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFDMMK 392

Query: 547 GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLG 606
             Y + P  DHY  F+DLL RAG   EA   +  +P +P+A +W ALL  CR+H N  +G
Sbjct: 393 -DYNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKIG 451

Query: 607 IQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNK 666
             AA+ +F+L P   G  VLL N+YA+ G+WDDAARVRK+M+  GVKKEP CSW+E++N 
Sbjct: 452 QYAADHVFELDPEDTGPPVLLYNIYASTGQWDDAARVRKMMKATGVKKEPACSWVEIENS 511

Query: 667 VHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKL 726
           VH+F+ DD+ HP+++ +Y+  E++   ++K GYVP+T +VL  ++  ++E  L  HSEK+
Sbjct: 512 VHMFVADDSTHPKSEEIYRMWEEVNTRIKKAGYVPNTDYVLLHIKEQERETKLQYHSEKI 571

Query: 727 AVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSC 786
           A+AF L+ +P GAT+R++KN+RICGDCH+AF+++S+V  REIVVRD  RFHHF +G CSC
Sbjct: 572 ALAFALINMPAGATIRIMKNIRICGDCHSAFRYVSEVFKREIVVRDTNRFHHFSNGSCSC 631

Query: 787 GDYW 790
           GDYW
Sbjct: 632 GDYW 635



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 169/388 (43%), Gaps = 75/388 (19%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           AR++H+H+  S       ++N LI +YCK   +  AR +FD IP                
Sbjct: 81  ARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIPT--------------- 125

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                             RD V +  +IT Y+ N     A+ L  DM R   +P  FTFT
Sbjct: 126 ------------------RDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFT 167

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           S L A A          QMH   VK        V +AL+ +Y +C           M  A
Sbjct: 168 SFLKA-AGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARC---------QQMDMA 217

Query: 214 RRVFDEMPERDELSWTTMMTGYV-KNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
            RVFD +  ++E+SW  ++ G+  K D      +F +      G                
Sbjct: 218 IRVFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGAT-------------- 263

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                     FTY+SV SA A  G    G+ VHA+++++  K T      V N ++ +Y 
Sbjct: 264 ---------HFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAF----VANTILGMYA 310

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR----ERNLLSWTV 388
           K G + +AR +F+++ +RDLV+WN +L+A+   GL  EA + FE +R    + N +++  
Sbjct: 311 KSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLS 370

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKP 416
           +++  +  G  +EG + F  M+    +P
Sbjct: 371 VLTACSHGGLVKEGKQYFDMMKDYNVEP 398



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 133/282 (47%), Gaps = 17/282 (6%)

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS----WNAILSAYV 363
           LL  E  PTP     V ++++T   +   +  AR I + +    L       N+++  Y 
Sbjct: 53  LLTGELAPTPR----VYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYC 108

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
             G + +A+ +F+ +  R+++SWT +I+G AQN    E L L   M    F+P  + F  
Sbjct: 109 KCGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTS 168

Query: 424 AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
            + +    G    G Q+HA  V    D  +  G+AL+ MYARC  ++ A  VF+ + + +
Sbjct: 169 FLKAAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKN 228

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFE 543
            VSWNA+IA   + G+G   +  + +M + G      T+ +V SA    G +++GR    
Sbjct: 229 EVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHA 288

Query: 544 TMHGPYGIPPGEDHYA----RFIDLLCRAGKFSEAKDVIDSL 581
            M     I  G+   A      + +  ++G   +A+ V D +
Sbjct: 289 HM-----IKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRV 325



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 87/211 (41%), Gaps = 12/211 (5%)

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
           SG A +     GL+    +      P    +   IT+CA    L   R +H+ L  S   
Sbjct: 35  SGPACSSSSSSGLRELDLLLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLA 94

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
                 N+LI MY +CG V  A  VF+ +P  D VSW  +I    Q+   A A+ L   M
Sbjct: 95  GDGFLLNSLIHMYCKCGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDM 154

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG---PYGIPPGEDHY--ARFIDLL 565
           L+    P   TF + L A    G    GR   E MH     Y +   ED Y  +  +D+ 
Sbjct: 155 LRARFRPSGFTFTSFLKAAGACG----GRGIGEQMHALAVKYNLD--EDVYVGSALLDMY 208

Query: 566 CRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
            R  +   A  V D L  K     W AL+AG
Sbjct: 209 ARCQQMDMAIRVFDWLDSKNEVS-WNALIAG 238


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 238/584 (40%), Positives = 350/584 (59%), Gaps = 34/584 (5%)

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
           R  +  A+ +F ++PE D +S+ TM++ YV+N  ++ A+ F + M      +WN +I+G+
Sbjct: 20  RGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGF 79

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
              +        Q+D+              LF +                P  ++   NA
Sbjct: 80  AQNQ--------QMDK-----------ARDLFLI---------------MPTKNVVTWNA 105

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           +++ Y +CG ++ A  +F + P + +V+W A+++ Y+  G I  A+ LFE M E+NL++W
Sbjct: 106 MISGYVECGDLDSALKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTW 165

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
             MI+G  +N   E+G+KLF  M   G +P     + A+  C+ L AL+ GRQ+H  +  
Sbjct: 166 NAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCK 225

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
           S      +AG +LI+MY +CGV+E    +F  +P  D V+WNAMI+   QHG G +A+ L
Sbjct: 226 SPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGL 285

Query: 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
           +++M+++G+ PD ITF+ VL ACNHAG    G +YF +M   YG+    DHY   +DLL 
Sbjct: 286 FDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLG 345

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626
           RAGK  EA D+I+ +PFKP A ++  LL  CRIH N ++   A+++L  L P  A  YV 
Sbjct: 346 RAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNTEMAEFASQKLLNLDPASATGYVQ 405

Query: 627 LSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKY 686
           L+N+YA   RWD  ARVRK M+   V K PG SWIEV +  H F   D  HPE  +++  
Sbjct: 406 LANVYAATKRWDHVARVRKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKFHPELASIHGK 465

Query: 687 LEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKN 746
           L++L  +M+  GYVPD +F LHD+  +QKE  L  HSEKLA+A+GL+KLP G  +RV KN
Sbjct: 466 LKELEKKMKLAGYVPDLEFALHDVGEEQKEQLLLWHSEKLAIAYGLIKLPPGTPIRVFKN 525

Query: 747 LRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           LR+CGDCH A K++S++  REI+VRD  RFHHF+DG CSC DYW
Sbjct: 526 LRVCGDCHRAIKYISQIERREIIVRDTTRFHHFKDGHCSCADYW 569



 Score =  142 bits (358), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 168/361 (46%), Gaps = 68/361 (18%)

Query: 62  KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMI 121
           K  KL  A+ LF +IP+PD V+  T+++ Y  + N++ A+  F   P+K  DT  +N MI
Sbjct: 19  KRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIK--DTPSWNTMI 76

Query: 122 TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGT 181
           T ++ N     A +LF  M   +V                                    
Sbjct: 77  TGFAQNQQMDKARDLFLIMPTKNV------------------------------------ 100

Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
                  NA+IS YV+C           + +A ++F++ P +  ++WT M+TGY+K   +
Sbjct: 101 ----VTWNAMISGYVECGD---------LDSALKLFEKAPFKSVVAWTAMITGYMKLGRI 147

Query: 242 DAAREFLDGMSENVGVAWNALISGYV--HRE-------LKMLMLRIQLDEFTYTSVISAC 292
             A    + M E   V WNA+I+GY+  HR          M+   IQ +  T +S +  C
Sbjct: 148 GLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGC 207

Query: 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL 352
           +     +LG+QVH  + ++   P  +       +L+++Y KCG + +   +F Q+P RD+
Sbjct: 208 SELSALQLGRQVHQLVCKS---PLCD-DTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDV 263

Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNL----LSWTVMISGLAQNGYGEEGLKLFSQ 408
           V+WNA++S Y   G   +A  LF+ M E+ +    +++  ++      G+ + G+K F  
Sbjct: 264 VTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHS 323

Query: 409 M 409
           M
Sbjct: 324 M 324



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 134/310 (43%), Gaps = 53/310 (17%)

Query: 48  PREHII--NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFN 105
           P ++++  N +I  Y +   L  A  LF++ P   +VA T +I  Y     + LA  +F 
Sbjct: 96  PTKNVVTWNAMISGYVECGDLDSALKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFE 155

Query: 106 KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV------LSAL 159
           K P K  + V +NAMI  Y  N      ++LFR M    ++P++ T +S       LSAL
Sbjct: 156 KMPEK--NLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSAL 213

Query: 160 ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDE 219
            L         Q+H  V KS     T+   +LIS+Y KC          ++    ++F +
Sbjct: 214 QL-------GRQVHQLVCKSPLCDDTTAGTSLISMYCKC---------GVLEDGWKLFVQ 257

Query: 220 MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQ 279
           +P RD ++W  M++GY ++     A    D M E                        ++
Sbjct: 258 VPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEK----------------------GMK 295

Query: 280 LDEFTYTSVISACANSGLFRLG-KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
            D  T+ +V+ AC ++G   LG K  H+          P+        +V L  + GK+ 
Sbjct: 296 PDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHY----TCMVDLLGRAGKLV 351

Query: 339 EARDIFNQMP 348
           EA D+  +MP
Sbjct: 352 EAVDLIEKMP 361


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 264/719 (36%), Positives = 393/719 (54%), Gaps = 81/719 (11%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
            TL+A Y      KLA           RD V +N ++++   N     A+E  R+M  + 
Sbjct: 240 NTLVAMYGKLG--KLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEG 297

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS-VLNALISVYVKCVSSPF 203
           V+PD FT +SVL A + + E  +   ++H   +K+G+    S V +AL+ +Y  C     
Sbjct: 298 VEPDEFTISSVLPACSHL-EMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNC----- 351

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
              + L G  RRVFD M +R    W  M+ GY +N++   A     GM E+ G+  N+  
Sbjct: 352 --KQVLSG--RRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANST- 406

Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
                               T   V+ AC  SG F   + +H +++              
Sbjct: 407 --------------------TMAGVVPACVRSGAFSRKEAIHGFVV-------------- 432

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
                       K    RD F Q         N ++  Y   G ID A  +F  M +R+L
Sbjct: 433 ------------KRGLDRDRFVQ---------NTLMDMYSRLGKIDIAMRIFGKMEDRDL 471

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMR-LE----------GFKPCDYAFAGAITSCAGLG 432
           ++W  MI+G   + + E+ L L  +M+ LE            KP        + SCA L 
Sbjct: 472 VTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALS 531

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
           AL  G+++HA  + +   + ++ G+AL+ MYA+CG ++ +  VF+ +P  + ++WN +I 
Sbjct: 532 ALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIM 591

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552
           A G HGNG  AI+L   M+ +G+ P+ +TF++V +AC+H+G+V EG R F  M   YG+ 
Sbjct: 592 AYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVE 651

Query: 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK-PSAPIWEALLAGCRIHGNIDLGIQAAE 611
           P  DHYA  +DLL RAG+  EA  +++ +P     A  W +LL   RIH N+++G  AA+
Sbjct: 652 PSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQ 711

Query: 612 QLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFL 671
            L QL P+ A  YVLL+N+Y++ G WD A  VR+ M+++GV+KEPGCSWIE  ++VH F+
Sbjct: 712 NLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFV 771

Query: 672 VDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFG 731
             D++HP+++ +  YLE L   MRK GYVPDT  VLH++E D+KE  L  HSEKLA+AFG
Sbjct: 772 AGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFG 831

Query: 732 LMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           ++    G  +RV KNLR+C DCH A KF+SK+V REI++RD +RFH F++G CSCGDYW
Sbjct: 832 ILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 158/659 (23%), Positives = 288/659 (43%), Gaps = 108/659 (16%)

Query: 26  RNPITSSLARS---VHAHMISSGFKPREH----IINRLIDIYCKSL-KLVYARTLFDEIP 77
           R+ + S+L R     +  MI  G KP  +    ++  + D+    L K ++A        
Sbjct: 70  RSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYG 129

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
              +    TL+  Y    +     ++F++  +  R+ V +N++I++         A+E F
Sbjct: 130 VDSVTVANTLVNLYRKCGDFGAVYKVFDR--ISERNQVSWNSLISSLCSFEKWEMALEAF 187

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM--QMHCTVVKSGTGLFTSVLNALISVY 195
           R M  ++V+P +FT  SV++A + +   E   M  Q+H   ++ G  L + ++N L+++Y
Sbjct: 188 RCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGE-LNSFIINTLVAMY 246

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            K       SS+ L+G+          RD ++W T+++   +N+ L  A E+L       
Sbjct: 247 GKL--GKLASSKVLLGS-------FGGRDLVTWNTVLSSLCQNEQLLEALEYL------- 290

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                        RE  M++  ++ DEFT +SV+ AC++  + R GK++HAY L+  +  
Sbjct: 291 -------------RE--MVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLD 335

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
              F   V +ALV +Y  C +V   R +F                               
Sbjct: 336 ENSF---VGSALVDMYCNCKQVLSGRRVF------------------------------- 361

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSCAGLGAL 434
           + M +R +  W  MI+G +QN + +E L LF  M    G        AG + +C   GA 
Sbjct: 362 DGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAF 421

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA- 493
                +H  +V  G D      N L+ MY+R G ++ A  +F  M + D V+WN MI   
Sbjct: 422 SRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGY 481

Query: 494 -LGQHGNGA----RAIELYEQMLKEG-----ILPDRITFLTVLSACNHAGLVKEGRR--- 540
              +H   A      ++  E+ + +G     + P+ IT +T+L +C     + +G+    
Sbjct: 482 VFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHA 541

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
           Y    +    +  G    +  +D+  + G    ++ V D +P K +   W  ++    +H
Sbjct: 542 YAIKNNLATDVAVG----SALVDMYAKCGCLQMSRKVFDQIPQK-NVITWNVIIMAYGMH 596

Query: 601 GNIDLGIQAAEQLFQLM-----PHHAGTYVLLSNMYANLGRWDDAARVRKLMR-DRGVK 653
           GN   G +A + L  +M     P+   T++ +    ++ G  D+  R+  +M+ D GV+
Sbjct: 597 GN---GQEAIDLLRMMMVQGVKPNEV-TFISVFAACSHSGMVDEGLRIFYVMKPDYGVE 651



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 111/221 (50%), Gaps = 7/221 (3%)

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
           A  +  A S+F + + R+   W  ++    ++    E +  +  M + G KP +YAF   
Sbjct: 45  ASAVSGAPSIFIS-QSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPAL 103

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYD-SSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
           + + A L  +E G+Q+HA +   GY   S++  N L+ +Y +CG   A   VF+ +   +
Sbjct: 104 LKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERN 163

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFE 543
            VSWN++I++L        A+E +  ML E + P   T ++V++AC++  +  EG    +
Sbjct: 164 QVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPM-PEGLMMGK 222

Query: 544 TMHGPYGIPPGEDH---YARFIDLLCRAGKFSEAKDVIDSL 581
            +H  YG+  GE +       + +  + GK + +K ++ S 
Sbjct: 223 QVHA-YGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSF 262



 Score = 79.3 bits (194), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 150/334 (44%), Gaps = 63/334 (18%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           S   ++H  ++  G      + N L+D+Y +  K+  A  +F ++   D+V   T+I  Y
Sbjct: 422 SRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGY 481

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
             S++ + A  + +K     R               S G + + L         KP++ T
Sbjct: 482 VFSEHHEDALLLLHKMQNLERKV-------------SKGASRVSL---------KPNSIT 519

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             ++L + A +    K   ++H   +K+      +V +AL+ +Y KC           + 
Sbjct: 520 LMTILPSCAALSALAKG-KEIHAYAIKNNLATDVAVGSALVDMYAKC---------GCLQ 569

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            +R+VFD++P+++ ++W  ++  Y              GM  N   A +          L
Sbjct: 570 MSRKVFDQIPQKNVITWNVIIMAY--------------GMHGNGQEAIDL---------L 606

Query: 272 KMLMLR-IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
           +M+M++ ++ +E T+ SV +AC++SG+   G ++  Y+++ +    P  S      +V L
Sbjct: 607 RMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIF-YVMKPDYGVEP--SSDHYACVVDL 663

Query: 331 YWKCGKVNEARDIFNQMPERDLV---SWNAILSA 361
             + G++ EA  + N MP RD     +W+++L A
Sbjct: 664 LGRAGRIKEAYQLMNMMP-RDFNKAGAWSSLLGA 696


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 264/719 (36%), Positives = 393/719 (54%), Gaps = 81/719 (11%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
            TL+A Y      KLA           RD V +N ++++   N     A+E  R+M  + 
Sbjct: 240 NTLVAMYGKLG--KLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEG 297

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS-VLNALISVYVKCVSSPF 203
           V+PD FT +SVL A + + E  +   ++H   +K+G+    S V +AL+ +Y  C     
Sbjct: 298 VEPDEFTISSVLPACSHL-EMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNC----- 351

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
              + L G  RRVFD M +R    W  M+ GY +N++   A     GM E+ G+  N+  
Sbjct: 352 --KQVLSG--RRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANST- 406

Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
                               T   V+ AC  SG F   + +H +++              
Sbjct: 407 --------------------TMAGVVPACVRSGAFSRKEAIHGFVV-------------- 432

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
                       K    RD F Q         N ++  Y   G ID A  +F  M +R+L
Sbjct: 433 ------------KRGLDRDRFVQ---------NTLMDMYSRLGKIDIAMRIFGKMEDRDL 471

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMR-LE----------GFKPCDYAFAGAITSCAGLG 432
           ++W  MI+G   + + E+ L L  +M+ LE            KP        + SCA L 
Sbjct: 472 VTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALS 531

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
           AL  G+++HA  + +   + ++ G+AL+ MYA+CG ++ +  VF+ +P  + ++WN +I 
Sbjct: 532 ALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIM 591

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552
           A G HGNG  AI+L   M+ +G+ P+ +TF++V +AC+H+G+V EG R F  M   YG+ 
Sbjct: 592 AYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVE 651

Query: 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK-PSAPIWEALLAGCRIHGNIDLGIQAAE 611
           P  DHYA  +DLL RAG+  EA  +++ +P     A  W +LL   RIH N+++G  AA+
Sbjct: 652 PSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQ 711

Query: 612 QLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFL 671
            L QL P+ A  YVLL+N+Y++ G WD A  VR+ M+++GV+KEPGCSWIE  ++VH F+
Sbjct: 712 NLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFV 771

Query: 672 VDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFG 731
             D++HP+++ +  YLE L   MRK GYVPDT  VLH++E D+KE  L  HSEKLA+AFG
Sbjct: 772 AGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFG 831

Query: 732 LMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           ++    G  +RV KNLR+C DCH A KF+SK+V REI++RD +RFH F++G CSCGDYW
Sbjct: 832 ILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 158/659 (23%), Positives = 288/659 (43%), Gaps = 108/659 (16%)

Query: 26  RNPITSSLARS---VHAHMISSGFKPREH----IINRLIDIYCKSL-KLVYARTLFDEIP 77
           R+ + S+L R     +  MI  G KP  +    ++  + D+    L K ++A        
Sbjct: 70  RSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYG 129

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
              +    TL+  Y    +     ++F++  +  R+ V +N++I++         A+E F
Sbjct: 130 VDSVTVANTLVNLYRKCGDFGAVYKVFDR--ISERNQVSWNSLISSLCSFEKWEMALEAF 187

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM--QMHCTVVKSGTGLFTSVLNALISVY 195
           R M  ++V+P +FT  SV++A + +   E   M  Q+H   ++ G  L + ++N L+++Y
Sbjct: 188 RCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGE-LNSFIINTLVAMY 246

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            K       SS+ L+G+          RD ++W T+++   +N+ L  A E+L       
Sbjct: 247 GKL--GKLASSKVLLGS-------FGGRDLVTWNTVLSSLCQNEQLLEALEYL------- 290

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                        RE  M++  ++ DEFT +SV+ AC++  + R GK++HAY L+  +  
Sbjct: 291 -------------RE--MVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLD 335

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
              F   V +ALV +Y  C +V   R +F                               
Sbjct: 336 ENSF---VGSALVDMYCNCKQVLSGRRVF------------------------------- 361

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSCAGLGAL 434
           + M +R +  W  MI+G +QN + +E L LF  M    G        AG + +C   GA 
Sbjct: 362 DGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAF 421

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA- 493
                +H  +V  G D      N L+ MY+R G ++ A  +F  M + D V+WN MI   
Sbjct: 422 SRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGY 481

Query: 494 -LGQHGNGA----RAIELYEQMLKEG-----ILPDRITFLTVLSACNHAGLVKEGRR--- 540
              +H   A      ++  E+ + +G     + P+ IT +T+L +C     + +G+    
Sbjct: 482 VFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHA 541

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
           Y    +    +  G    +  +D+  + G    ++ V D +P K +   W  ++    +H
Sbjct: 542 YAIKNNLATDVAVG----SALVDMYAKCGCLQMSRKVFDQIPQK-NVITWNVIIMAYGMH 596

Query: 601 GNIDLGIQAAEQLFQLM-----PHHAGTYVLLSNMYANLGRWDDAARVRKLMR-DRGVK 653
           GN   G +A + L  +M     P+   T++ +    ++ G  D+  R+  +M+ D GV+
Sbjct: 597 GN---GQEAIDLLRMMMVQGVKPNEV-TFISVFAACSHSGMVDEGLRIFYVMKPDYGVE 651



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 111/221 (50%), Gaps = 7/221 (3%)

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
           A  +  A S+F + + R+   W  ++    ++    E +  +  M + G KP +YAF   
Sbjct: 45  ASAVSGAPSIFIS-QSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPAL 103

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYD-SSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
           + + A L  +E G+Q+HA +   GY   S++  N L+ +Y +CG   A   VF+ +   +
Sbjct: 104 LKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERN 163

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFE 543
            VSWN++I++L        A+E +  ML E + P   T ++V++AC++  +  EG    +
Sbjct: 164 QVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPM-PEGLMMGK 222

Query: 544 TMHGPYGIPPGEDH---YARFIDLLCRAGKFSEAKDVIDSL 581
            +H  YG+  GE +       + +  + GK + +K ++ S 
Sbjct: 223 QVHA-YGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSF 262



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 150/334 (44%), Gaps = 63/334 (18%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           S   ++H  ++  G      + N L+D+Y +  K+  A  +F ++   D+V   T+I  Y
Sbjct: 422 SRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGY 481

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
             S++ + A  + +K     R               S G + + L         KP++ T
Sbjct: 482 VFSEHHEDALLLLHKMQNLERKV-------------SKGASRVSL---------KPNSIT 519

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             ++L + A +    K   ++H   +K+      +V +AL+ +Y KC           + 
Sbjct: 520 LMTILPSCAALSALAKG-KEIHAYAIKNNLATDVAVGSALVDMYAKC---------GCLQ 569

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            +R+VFD++P+++ ++W  ++  Y              GM  N   A +          L
Sbjct: 570 MSRKVFDQIPQKNVITWNVIIMAY--------------GMHGNGQEAIDL---------L 606

Query: 272 KMLMLR-IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
           +M+M++ ++ +E T+ SV +AC++SG+   G ++  Y+++ +    P  S      +V L
Sbjct: 607 RMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIF-YVMKPDYGVEP--SSDHYACVVDL 663

Query: 331 YWKCGKVNEARDIFNQMPERDLV---SWNAILSA 361
             + G++ EA  + N MP RD     +W+++L A
Sbjct: 664 LGRAGRIKEAYQLMNMMP-RDFNKAGAWSSLLGA 696


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 240/583 (41%), Positives = 351/583 (60%), Gaps = 44/583 (7%)

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL----- 271
           F+ MP R+ +S   ++ G+V++  LD+A +  D M E     WNA++SG +  E      
Sbjct: 15  FNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGL 74

Query: 272 ----KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327
               +M  L    DEFT  SV+  CA       GKQVHAY+L    K   EF+L V ++L
Sbjct: 75  FLFREMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVL----KYGYEFNLVVGSSL 130

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWT 387
             +Y K G + E   +   M  R++V+WN                               
Sbjct: 131 AHMYMKSGSLGEGEKVIKAMRIRNVVAWN------------------------------- 159

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447
            +I+G AQNG+ E  L L++ M++ G +P        I+S A L  L  G+Q+HA+ + +
Sbjct: 160 TLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKA 219

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
           G +S+++  ++LI+MY++CG +E +        + DSV W++MIAA G HG G  A+ L+
Sbjct: 220 GANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLF 279

Query: 508 EQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR 567
           EQM +EG+  + +TFL++L AC+H GL ++G  +F+ M   YG+ P  +HY   +DLL R
Sbjct: 280 EQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGR 339

Query: 568 AGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627
           +G   EA+ +I S+P +    IW+ LL+ CRIH N D+  + AE++ +L P  + TYVLL
Sbjct: 340 SGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEEILRLNPQDSATYVLL 399

Query: 628 SNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYL 687
           SN++A+  RW D ++VR  MRDR VKKEPG SW+EV N+V  F + D +HP ++ +  YL
Sbjct: 400 SNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVFQFSMGDKSHPMSEEIDLYL 459

Query: 688 EQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNL 747
           ++L+ EM+  GYVPDT  V HD +S++KE +L  HSEKLA+AFGLM +P G+ +RV+KNL
Sbjct: 460 KELMEEMKLRGYVPDTATVFHDTDSEEKENSLVNHSEKLAIAFGLMNIPPGSPIRVMKNL 519

Query: 748 RICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           RIC DCH A K +S +  REI+VRD  RFHHF+ GKCSCGDYW
Sbjct: 520 RICSDCHVAIKLISDINNREIIVRDTSRFHHFKHGKCSCGDYW 562



 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 154/291 (52%), Gaps = 12/291 (4%)

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           +Y+K G++ EA   FN MP R+++S N +++ +V  G +D A  +F+ M ERN+ +W  M
Sbjct: 1   MYFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAM 60

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           +SGL Q  + E GL LF +M   GF P ++     +  CAGL A   G+Q+HA ++  GY
Sbjct: 61  VSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGY 120

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
           + +L  G++L  MY + G +     V   M   + V+WN +IA   Q+G+    ++LY  
Sbjct: 121 EFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNM 180

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH----YARFIDLL 565
           M   G+ PD+IT ++V+S+      + +G++    +H    I  G +      +  I + 
Sbjct: 181 MKMSGLRPDKITLVSVISSSAELATLFQGQQ----IHAE-AIKAGANSAVAVLSSLISMY 235

Query: 566 CRAGKFSEA-KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
            + G   ++ K ++D     P + +W +++A    HG  +  +   EQ+ Q
Sbjct: 236 SKCGCLEDSMKALLDCE--HPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQ 284



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 107/459 (23%), Positives = 189/459 (41%), Gaps = 77/459 (16%)

Query: 59  IYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYN 118
           +Y K  ++  A   F+ +P  +I++   LI  +    ++  A ++F++  +  R+   +N
Sbjct: 1   MYFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDE--MLERNVATWN 58

Query: 119 AMITA---YSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
           AM++    +  N NG   + LFR+M      PD FT  SVL   A +        Q+H  
Sbjct: 59  AMVSGLIQFEFNENG---LFLFREMHELGFLPDEFTLGSVLRGCAGL-RASYAGKQVHAY 114

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
           V+K G      V ++L  +Y+K  S         +G   +V   M  R+ ++W T++ G 
Sbjct: 115 VLKYGYEFNLVVGSSLAHMYMKSGS---------LGEGEKVIKAMRIRNVVAWNTLIAGN 165

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
            +N + +   +  + M                    KM  LR   D+ T  SVIS+ A  
Sbjct: 166 AQNGHFEGVLDLYNMM--------------------KMSGLRP--DKITLVSVISSSAEL 203

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
                G+Q+HA  ++  A      ++ V ++L+++Y KCG + ++          D V W
Sbjct: 204 ATLFQGQQIHAEAIKAGANS----AVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLW 259

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           +++++AY   G  +EA  LFE M +                               EG  
Sbjct: 260 SSMIAAYGFHGRGEEAVHLFEQMEQ-------------------------------EGLG 288

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANC 474
             D  F   + +C+  G  E G      +V   G    L     ++ +  R G ++ A  
Sbjct: 289 GNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEA 348

Query: 475 VFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           +  +MP   D V W  +++A   H N   A    E++L+
Sbjct: 349 MIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEEILR 387


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 261/719 (36%), Positives = 393/719 (54%), Gaps = 81/719 (11%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
            TL+A Y      KLA           RD V +N ++++   N     A+E  R+M  + 
Sbjct: 153 NTLVAMYGKLG--KLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEG 210

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS-VLNALISVYVKCVSSPF 203
           V+PD FT +SVL A + + E  +   ++H   +K+G+    S V +AL+ +Y  C     
Sbjct: 211 VEPDEFTISSVLPACSHL-EMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNC----- 264

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
              + L G  RRVFD M +R    W  M+ GY +N++   A     GM E+ G+  N+  
Sbjct: 265 --KQVLSG--RRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANST- 319

Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
                               T   V+ AC  SG F   + +H ++++             
Sbjct: 320 --------------------TMAGVVPACVRSGAFSRKEAIHGFVVK------------- 346

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
                                 +  +RD    N ++  Y   G ID A  +F  M +R+L
Sbjct: 347 ----------------------RGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDL 384

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMR-LE----------GFKPCDYAFAGAITSCAGLG 432
           ++W  MI+G   + + E+ L L  +M+ LE            KP        + SCA L 
Sbjct: 385 VTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALS 444

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
           AL  G+++HA  + +   + ++ G+AL+ MYA+CG ++ +  VF+ +P  + ++WN +I 
Sbjct: 445 ALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIM 504

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552
           A G HGNG  AI+L   M+ +G+ P+ +TF++V +AC+H+G+V EG R F  M   YG+ 
Sbjct: 505 AYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVE 564

Query: 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK-PSAPIWEALLAGCRIHGNIDLGIQAAE 611
           P  DHYA  +DLL RAG+  EA  +++ +P     A  W +LL   RIH N+++G  AA+
Sbjct: 565 PSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQ 624

Query: 612 QLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFL 671
            L QL P+ A  YVLL+N+Y++ G WD A  VR+ M+++GV+KEPGCSWIE  ++VH F+
Sbjct: 625 NLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFV 684

Query: 672 VDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFG 731
             D++HP+++ +  YLE L   MRK GYVPDT  VLH++E D+KE  L  HSEKLA+AFG
Sbjct: 685 AGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFG 744

Query: 732 LMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           ++    G  +RV KNLR+C DCH A KF+SK+V REI++RD +RFH F++G CSCGDYW
Sbjct: 745 ILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 803



 Score =  156 bits (395), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 145/596 (24%), Positives = 264/596 (44%), Gaps = 100/596 (16%)

Query: 81  IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
           +    TL+  Y    +     ++F++  +  R+ V +N++I++         A+E FR M
Sbjct: 46  VTVANTLVNLYRKCGDFGAVYKVFDR--ISERNQVSWNSLISSLCSFEKWEMALEAFRCM 103

Query: 141 RRDDVKPDNFTFTSVLSALALIVEEEKQCM--QMHCTVVKSGTGLFTSVLNALISVYVKC 198
             ++V+P +FT  SV++A + +   E   M  Q+H   ++ G  L + ++N L+++Y K 
Sbjct: 104 LDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGE-LNSFIINTLVAMYGKL 162

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
                 SS+ L+G+          RD ++W T+++   +N+ L  A E+L          
Sbjct: 163 --GKLASSKVLLGS-------FGGRDLVTWNTVLSSLCQNEQLLEALEYL---------- 203

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                     RE  M++  ++ DEFT +SV+ AC++  + R GK++HAY L+  +     
Sbjct: 204 ----------RE--MVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 251

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
           F   V +ALV +Y  C +V   R +F                               + M
Sbjct: 252 F---VGSALVDMYCNCKQVLSGRRVF-------------------------------DGM 277

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSCAGLGALENG 437
            +R +  W  MI+G +QN + +E L LF  M    G        AG + +C   GA    
Sbjct: 278 FDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRK 337

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA--LG 495
             +H  +V  G D      N L+ MY+R G ++ A  +F  M + D V+WN MI      
Sbjct: 338 EAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFS 397

Query: 496 QHGNGA----RAIELYEQMLKEG-----ILPDRITFLTVLSACNHAGLVKEGRR---YFE 543
           +H   A      ++  E+ + +G     + P+ IT +T+L +C     + +G+    Y  
Sbjct: 398 EHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAI 457

Query: 544 TMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNI 603
             +    +  G    +  +D+  + G    ++ V D +P K +   W  ++    +HGN 
Sbjct: 458 KNNLATDVAVG----SALVDMYAKCGCLQMSRKVFDQIPQK-NVITWNVIIMAYGMHGN- 511

Query: 604 DLGIQAAEQLFQLM-----PHHAGTYVLLSNMYANLGRWDDAARVRKLMR-DRGVK 653
             G +A + L  +M     P+   T++ +    ++ G  D+  R+  +M+ D GV+
Sbjct: 512 --GQEAIDLLRMMMVQGVKPNEV-TFISVFAACSHSGMVDEGLRIFYVMKPDYGVE 564



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 130/465 (27%), Positives = 209/465 (44%), Gaps = 90/465 (19%)

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFT-SVLNALISVYVKCVSSPF 203
           +KPDN+ F ++L A+A + + E    Q+H  V K G G+ + +V N L+++Y KC     
Sbjct: 6   IKPDNYAFPALLKAVADLQDMELG-KQIHAHVYKFGYGVDSVTVANTLVNLYRKCGD--- 61

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAARE-FLDGMSENVGVAWNAL 262
                  GA  +VFD + ER+++SW ++++     +  + A E F   + ENV       
Sbjct: 62  ------FGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENV------- 108

Query: 263 ISGYVHRELKMLMLRIQLDEFTYTSVISACAN----SGLFRLGKQVHAYLLRTEAKPTPE 318
                           +   FT  SV++AC+N     GL  +GKQVHAY LR       E
Sbjct: 109 ----------------EPSSFTLVSVVTACSNLPMPEGLM-MGKQVHAYGLR-----KGE 146

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
            +  + N LV +Y K GK+  ++ +      RDLV+WN +LS+                 
Sbjct: 147 LNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSS----------------- 189

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
                         L QN    E L+   +M LEG +P ++  +  + +C+ L  L  G+
Sbjct: 190 --------------LCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGK 235

Query: 439 QLHAQLVHSG-YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           +LHA  + +G  D +   G+AL+ MY  C  V +   VF+ M +     WNAMIA   Q+
Sbjct: 236 ELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQN 295

Query: 498 GNGARAIELYEQMLKE-GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
            +   A+ L+  M +  G+L +  T   V+ AC  +G         E +HG + +  G D
Sbjct: 296 EHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRK----EAIHG-FVVKRGLD 350

Query: 557 HYARFI-----DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
              RF+     D+  R GK   A  +   +  +     W  ++ G
Sbjct: 351 R-DRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVT-WNTMITG 393



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 157/332 (47%), Gaps = 49/332 (14%)

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           M++L I+ D + + +++ A A+     LGKQ+HA++ +         S+ V N LV LY 
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVD---SVTVANTLVNLYR 57

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           KCG       +F+++ ER+ VSWN+++S+  S          FE         W      
Sbjct: 58  KCGDFGAVYKVFDRISERNQVSWNSLISSLCS----------FE--------KW------ 93

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN---GRQLHAQLVHSGY 449
                  E  L+ F  M  E  +P  +     +T+C+ L   E    G+Q+HA  +  G 
Sbjct: 94  -------EMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGE 146

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
            +S    N L+ MY + G + ++  +  +    D V+WN ++++L Q+     A+E   +
Sbjct: 147 LNSFII-NTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLRE 205

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG---EDHY--ARFIDL 564
           M+ EG+ PD  T  +VL AC+H  +++ G+     +H  Y +  G   E+ +  +  +D+
Sbjct: 206 MVLEGVEPDEFTISSVLPACSHLEMLRTGKE----LHA-YALKNGSLDENSFVGSALVDM 260

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
            C   +    + V D + F     +W A++AG
Sbjct: 261 YCNCKQVLSGRRVFDGM-FDRKIGLWNAMIAG 291



 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 150/334 (44%), Gaps = 63/334 (18%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           S   ++H  ++  G      + N L+D+Y +  K+  A  +F ++   D+V   T+I  Y
Sbjct: 335 SRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGY 394

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
             S++ + A  + +K     R               S G + + L         KP++ T
Sbjct: 395 VFSEHHEDALLLLHKMQNLERKV-------------SKGASRVSL---------KPNSIT 432

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             ++L + A +    K   ++H   +K+      +V +AL+ +Y KC           + 
Sbjct: 433 LMTILPSCAALSALAKG-KEIHAYAIKNNLATDVAVGSALVDMYAKC---------GCLQ 482

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            +R+VFD++P+++ ++W  ++  Y              GM  N   A +          L
Sbjct: 483 MSRKVFDQIPQKNVITWNVIIMAY--------------GMHGNGQEAIDL---------L 519

Query: 272 KMLMLR-IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
           +M+M++ ++ +E T+ SV +AC++SG+   G ++  Y+++ +    P  S      +V L
Sbjct: 520 RMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIF-YVMKPDYGVEP--SSDHYACVVDL 576

Query: 331 YWKCGKVNEARDIFNQMPERDLV---SWNAILSA 361
             + G++ EA  + N MP RD     +W+++L A
Sbjct: 577 LGRAGRIKEAYQLMNMMP-RDFNKAGAWSSLLGA 609


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 258/687 (37%), Positives = 391/687 (56%), Gaps = 64/687 (9%)

Query: 114 TVFYNAMITAYS-HNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQM 172
           T F +A   ++S   S+   A+  +  MR+ D++ D+F   SVL A + I    +   ++
Sbjct: 73  THFNHAQQVSFSPFESHPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQI-SVARMGKEI 131

Query: 173 HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMM 232
           H   VK+G      V+NAL+ +Y +C S         + +AR +FD+M ERD +SW+TM+
Sbjct: 132 HGFSVKNGLVSDVFVVNALMQMYSECGS---------LVSARLLFDKMSERDVVSWSTMI 182

Query: 233 TGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE---------LKMLMLRIQLDEF 283
             Y+   Y         G S+   V+W A+I+GY+            ++M+   +  ++ 
Sbjct: 183 RAYITLFY---------GFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDI 233

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
           T  S+I +C   G  +LGK++HAY+LR         SL +  ALV +Y KCG++  AR  
Sbjct: 234 TMLSLIISCGFVGAVQLGKRLHAYILRNGFG----MSLALATALVDMYGKCGEIRSAR-- 287

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
                                        ++F++M+ +++++WT MIS  AQ    +   
Sbjct: 288 -----------------------------AIFDSMKNKDVMTWTAMISAYAQANCIDYAF 318

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
           +LF QMR  G +P +      ++ CA  GAL+ G+  HA +   G +  +    ALI MY
Sbjct: 319 QLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMY 378

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
           A+CG +  A  +F+   + D  +WN M+A  G HG G +A++L+ +M   G+ P+ ITF+
Sbjct: 379 AKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFI 438

Query: 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF 583
             L AC+HAGLV EG+  FE M   +G+ P  +HY   +DLL RAG   EA  +I+S+P 
Sbjct: 439 GALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPV 498

Query: 584 KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARV 643
            P+  IW A+LA C+IH N ++G  AA +L  L P + G  VL+SN+YA   RW+D A +
Sbjct: 499 TPNIAIWGAMLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGM 558

Query: 644 RKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDT 703
           RK ++D G+KKEPG S IEV+  VH F + DTAHP  + + + L ++  ++++ GY+PDT
Sbjct: 559 RKAVKDTGIKKEPGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYLPDT 618

Query: 704 KFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKV 763
             VLH+++ ++KE AL+ HSEKLA+AFGL+    G  +RV+KNLRIC DCH   K +SK+
Sbjct: 619 SVVLHNIDEEEKETALNYHSEKLAMAFGLISTAPGTPIRVVKNLRICDDCHTVTKLLSKI 678

Query: 764 VGREIVVRDGKRFHHFRDGKCSCGDYW 790
             R I+VRD  RFHHFR+G CSCG YW
Sbjct: 679 YKRVIIVRDRNRFHHFREGSCSCGGYW 705



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 117/474 (24%), Positives = 221/474 (46%), Gaps = 84/474 (17%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
            + + + +H   + +G      ++N L+ +Y +   LV AR LFD++ + D+V+ +T+I 
Sbjct: 124 VARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIR 183

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
           AY           +F       R  V + AMI  Y   ++      LF  M  ++V P++
Sbjct: 184 AYIT---------LFYG--FSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPND 232

Query: 150 FTFTSVLSALALI--VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSR 207
            T  S++ +   +  V+  K   ++H  ++++G G+  ++  AL+ +Y KC         
Sbjct: 233 ITMLSLIISCGFVGAVQLGK---RLHAYILRNGFGMSLALATALVDMYGKC--------- 280

Query: 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV 267
             + +AR +FD M  +D ++WT M++ Y + + +D A +    M +N             
Sbjct: 281 GEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDN------------- 327

Query: 268 HRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327
                     ++ +E T  S++S CA +G   +GK  HAY+     K   E  + +  AL
Sbjct: 328 ---------GVRPNELTMVSLLSLCAVNGALDMGKWFHAYI----DKQGVEVDVILKTAL 374

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWT 387
           + +Y KCG ++ A+ +F++  +RD+ +WN +++ Y                         
Sbjct: 375 IDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGY------------------------- 409

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447
                   +GYGE+ LKLF++M   G KP D  F GA+ +C+  G +  G+ L  +++H 
Sbjct: 410 ------GMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHD 463

Query: 448 -GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGN 499
            G    +     ++ +  R G+++ A  +  +MP   +++ W AM+AA   H N
Sbjct: 464 FGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKN 517


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 254/679 (37%), Positives = 380/679 (55%), Gaps = 82/679 (12%)

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC---MQM 172
            YN++I A S +     A+ L+  M +  +KPD+ T+  V+ A      E       + +
Sbjct: 162 LYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKA----CNESSVTWFGLLV 217

Query: 173 HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMM 232
           H  VVKSG    + ++++LI +Y         ++   +GAA+++F+    RD        
Sbjct: 218 HTHVVKSGFECDSYIVSSLIHLY---------ANGKDLGAAKQLFNLCSARDV------- 261

Query: 233 TGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISAC 292
                                   V+WNA+I GYV + ++M   R+  D      VIS  
Sbjct: 262 ------------------------VSWNAMIDGYV-KHVEMGHARMVFDRMVCRDVISW- 295

Query: 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL 352
                                           N ++  Y   GK++EA+ +F++MPER+L
Sbjct: 296 --------------------------------NTMINGYAIVGKIDEAKRLFDEMPERNL 323

Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
           VSWN++L+ +V  G +++A  LF  M  R+++SW  M++  AQ G   E L LF QMR  
Sbjct: 324 VSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAV 383

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
           G KP +      +++CA LGAL+ G  LH  +  +  + +   G AL+ MYA+CG +  A
Sbjct: 384 GVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLA 443

Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
             VFN M + D ++WN +IA +  HGN   A +L+++M + G+ P+ ITF+ +LSAC+HA
Sbjct: 444 TQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHA 503

Query: 533 GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592
           G+V EG++  + M   YGI P  +HY   IDLL RAG   EA ++I ++P +P+     A
Sbjct: 504 GMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGA 563

Query: 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           LL GCRIHGN +LG    ++L  L P H+G Y+LLSN+YA   +WDDA +VR LM+  G+
Sbjct: 564 LLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGI 623

Query: 653 KKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRK-LGYVPDTKFVLHDME 711
            K PG S IE+   VH F+  D +HPE+  +Y+ L ++   ++  +GY  DT  VL DME
Sbjct: 624 SKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDME 683

Query: 712 SDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVR 771
            + KE+AL+ HSEKLA+A+GL+ L     +R++KNLR+C DCH+  K +SKV GREI+VR
Sbjct: 684 EEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVR 743

Query: 772 DGKRFHHFRDGKCSCGDYW 790
           D  RFHHF DG+CSC D+W
Sbjct: 744 DRNRFHHFEDGECSCLDFW 762



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/373 (21%), Positives = 152/373 (40%), Gaps = 97/373 (26%)

Query: 37  VHAHMISSGFKPREHII-------------------------------NRLIDIYCKSLK 65
           VH H++ SGF+   +I+                               N +ID Y K ++
Sbjct: 217 VHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVE 276

Query: 66  LVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTP----------------- 108
           + +AR +FD +   D+++  T+I  Y+    +  A+ +F++ P                 
Sbjct: 277 MGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKC 336

Query: 109 ------------LKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
                       +  RD V +N+M+  Y+     + A+ LF  MR   VKP   T  S+L
Sbjct: 337 GNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 396

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
           SA A +   +K  + +H  +  +   + + V  AL+ +Y KC           +  A +V
Sbjct: 397 SACAHLGALDKG-LHLHTYINDNRIEVNSIVGTALVDMYAKC---------GKISLATQV 446

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLML 276
           F+ M  +D L+W T++ G   +  +  A++    M E  GV  N                
Sbjct: 447 FNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKE-AGVEPN---------------- 489

Query: 277 RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVTLYWKCG 335
                + T+ +++SAC+++G+   G+++   +  +   +P  E        ++ L  + G
Sbjct: 490 -----DITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHY----GCVIDLLARAG 540

Query: 336 KVNEARDIFNQMP 348
            + EA ++   MP
Sbjct: 541 FLEEAMELIGTMP 553



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 100/451 (22%), Positives = 177/451 (39%), Gaps = 73/451 (16%)

Query: 298 FRLGKQVHAYLLRTEAK-PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWN 356
           F LG    A L  + ++ P P  + P N  +++L+  C  +   + +  Q+       + 
Sbjct: 69  FGLGGWSDAKLQSSMSRTPNPLTNPPSNPQILSLFNPCKTLRHLKQVHAQIITHHNSPFQ 128

Query: 357 AILSAYVSAG-----LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
               A +SA       +  AK++F  ++      +  +I  L+ +    E L L+  M  
Sbjct: 129 LSALASLSALSPFPTFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQ 188

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
            G KP    +   I +C        G  +H  +V SG++      ++LI +YA    + A
Sbjct: 189 SGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGA 248

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
           A  +FN     D VSWNAMI    +H     A  ++++M    +  D I++ T+++    
Sbjct: 249 AKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRM----VCRDVISWNTMINGYAI 304

Query: 532 AGLVKEGRRYFETM------------HGPYGIPPGEDHYARFIDLLCR------------ 567
            G + E +R F+ M             G       ED +  F ++ CR            
Sbjct: 305 VGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACY 364

Query: 568 --AGKFSEAKDVID---SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622
              GK +EA  + D   ++  KP+     +LL+ C   G +D G+            H  
Sbjct: 365 AQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGL------------HLH 412

Query: 623 TYV-------------LLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHV 669
           TY+              L +MYA  G+   A +V   M  + V      +W    N +  
Sbjct: 413 TYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDV-----LAW----NTIIA 463

Query: 670 FLVDDTAHPEAQAVYKYLEQLVLEMRKLGYV 700
            +       EAQ ++K +++  +E   + +V
Sbjct: 464 GMAIHGNVKEAQQLFKEMKEAGVEPNDITFV 494


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 268/713 (37%), Positives = 389/713 (54%), Gaps = 68/713 (9%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           Q D    T LI AYS   NV  AR++F+    K  D V +  M+  Y+ N     ++ LF
Sbjct: 136 QADAFVGTALIDAYSVCGNVDAARQVFDGIYFK--DMVSWTGMVACYAENYCHEDSLLLF 193

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
             MR    +P+NFT ++ L +   + E  K    +H   +K        V  AL+ +Y K
Sbjct: 194 CQMRIMGYRPNNFTISAALKSCNGL-EAFKVGKSVHGCALKVCYDRDLYVGIALLELYTK 252

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
                       +  A++ F+EMP+ D + W+ M++ Y ++D    A E    M ++  V
Sbjct: 253 ---------SGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVV 303

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
             N                      FT+ SV+ ACA+  L  LG Q+H+ +L    K   
Sbjct: 304 VPN---------------------NFTFASVLQACASLVLLNLGNQIHSCVL----KVGL 338

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
           + ++ V+NAL+ +Y KCG+                               I+ +  LF  
Sbjct: 339 DSNVFVSNALMDVYAKCGE-------------------------------IENSVKLFTG 367

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
             E+N ++W  +I G  Q G GE+ L LFS M     +P +  ++  + + A L ALE G
Sbjct: 368 STEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPG 427

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           RQ+H+  + + Y+      N+LI MYA+CG ++ A   F+ M   D VSWNA+I     H
Sbjct: 428 RQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIH 487

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
           G G  A+ L++ M +    P+++TF+ VLSAC++AGL+ +GR +F++M   YGI P  +H
Sbjct: 488 GLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEH 547

Query: 558 YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           Y   + LL R+G+F EA  +I  +PF+PS  +W ALL  C IH N+DLG   A+++ ++ 
Sbjct: 548 YTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEME 607

Query: 618 PHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAH 677
           P    T+VLLSNMYA   RWD+ A VRK M+ + VKKEPG SW+E    VH F V DT+H
Sbjct: 608 PQDDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSH 667

Query: 678 PEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPG 737
           P  + ++  LE L  + R  GYVPD   VL D+E D+KE  L  HSE+LA+AFGL+++P 
Sbjct: 668 PNIKLIFAMLEWLYKKTRDAGYVPDCSVVLLDVEDDEKERLLWMHSERLALAFGLIQIPS 727

Query: 738 GATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           G ++R++KNLRIC DCH   K +SK+V REIV+RD  RFHHFR G CSCGDYW
Sbjct: 728 GCSIRIIKNLRICVDCHAVIKLVSKIVQREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 152/590 (25%), Positives = 265/590 (44%), Gaps = 100/590 (16%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+ A+  L+  Y     ++ A ++F++ PL   +TV +  +   +S +     A  L   
Sbjct: 37  DLFAQNILLNTYVHFGFLEDASKLFDEMPLT--NTVSFVTLAQGFSRSHQFQRARRLLLR 94

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           + R+  + + F FT++L  L + ++    C+ +H  V K G      V  ALI  Y  C 
Sbjct: 95  LFREGYEVNQFVFTTLLKLL-VSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCG 153

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
           +         + AAR+VFD +  +D +SWT M+  Y +N                     
Sbjct: 154 N---------VDAARQVFDGIYFKDMVSWTGMVACYAEN--------------------- 183

Query: 260 NALISGYVHRELKMLMLRIQL-----DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
                 Y H +  +L  ++++     + FT ++ + +C     F++GK VH   L    K
Sbjct: 184 ------YCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCAL----K 233

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
              +  L V  AL+ LY K G++ EA+  F +MP+ DL+ W+ ++S Y            
Sbjct: 234 VCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRY------------ 281

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG-FKPCDYAFAGAITSCAGLGA 433
                              AQ+   +E L+LF +MR      P ++ FA  + +CA L  
Sbjct: 282 -------------------AQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVL 322

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
           L  G Q+H+ ++  G DS++   NAL+ +YA+CG +E +  +F      + V+WN +I  
Sbjct: 323 LNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVG 382

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY----FETMHGPY 549
             Q G+G +A+ L+  ML   I P  +T+ +VL A      ++ GR+      +TM+   
Sbjct: 383 YVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKD 442

Query: 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609
            +          ID+  + G+  +A+   D +  K     W AL+ G  IHG   LG++A
Sbjct: 443 SVVANS-----LIDMYAKCGRIDDARLTFDKMD-KQDEVSWNALICGYSIHG---LGMEA 493

Query: 610 AEQLFQLMPHHAG-----TYVLLSNMYANLGRWDDA-ARVRKLMRDRGVK 653
              LF +M          T+V + +  +N G  D   A  + +++D G++
Sbjct: 494 L-NLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIE 542



 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 123/470 (26%), Positives = 205/470 (43%), Gaps = 103/470 (21%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           + +SVH   +   +    ++   L+++Y KS ++  A+  F+E+P+ D++  + +I+ Y+
Sbjct: 223 VGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYA 282

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD-VKPDNFT 151
            SD  K                                  A+ELF  MR+   V P+NFT
Sbjct: 283 QSDKSK---------------------------------EALELFCRMRQSSVVVPNNFT 309

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           F SVL A A +V       Q+H  V+K G      V NAL+ VY KC           + 
Sbjct: 310 FASVLQACASLVLLNLG-NQIHSCVLKVGLDSNVFVSNALMDVYAKC---------GEIE 359

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            + ++F    E++E++W T++ GYV+   L    + L+  S                   
Sbjct: 360 NSVKLFTGSTEKNEVAWNTIIVGYVQ---LGDGEKALNLFS------------------- 397

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
            ML L IQ  E TY+SV+ A A+      G+Q+H+  ++T           V N+L+ +Y
Sbjct: 398 NMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDS----VVANSLIDMY 453

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            KCG++++AR  F++M ++D VSWNA++  Y   GL  EA +LF+ M++ N         
Sbjct: 454 AKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSN--------- 504

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR-QLHAQLVHSGYD 450
                                  KP    F G +++C+  G L+ GR    + L   G +
Sbjct: 505 ----------------------SKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIE 542

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV-SWNAMIAALGQHGN 499
             +     ++ +  R G  + A  +   +P   SV  W A++ A   H N
Sbjct: 543 PCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKN 592



 Score =  129 bits (323), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 164/370 (44%), Gaps = 67/370 (18%)

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +HC ++K G  L     N L++ YV             +  A ++FDEMP  + +S+ T+
Sbjct: 25  LHCHILKHGASLDLFAQNILLNTYVH---------FGFLEDASKLFDEMPLTNTVSFVTL 75

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
             G+ ++     AR  L  +             GY            ++++F +T+++  
Sbjct: 76  AQGFSRSHQFQRARRLLLRLFR----------EGY------------EVNQFVFTTLLKL 113

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
             +  L      VHAY+                       +K G             + D
Sbjct: 114 LVSMDLADTCLSVHAYV-----------------------YKLGH------------QAD 138

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
                A++ AY   G +D A+ +F+ +  ++++SWT M++  A+N   E+ L LF QMR+
Sbjct: 139 AFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRI 198

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
            G++P ++  + A+ SC GL A + G+ +H   +   YD  L  G AL+ +Y + G +  
Sbjct: 199 MGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAE 258

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG-ILPDRITFLTVLSACN 530
           A   F  MP  D + W+ MI+   Q      A+EL+ +M +   ++P+  TF +VL AC 
Sbjct: 259 AQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACA 318

Query: 531 HAGLVKEGRR 540
              L+  G +
Sbjct: 319 SLVLLNLGNQ 328


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 265/728 (36%), Positives = 421/728 (57%), Gaps = 67/728 (9%)

Query: 80  DIVARTTLIAAY-SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFR 138
           D+V    LI+ Y S  D+   AR +F+   + +R+++ +N++I+ YS   +  +A +LF 
Sbjct: 236 DVVVCNVLISMYGSCLDSANDARSVFDG--IGIRNSISWNSIISVYSRRGDAVSAYDLFS 293

Query: 139 DMRRDDVKPDNFTF--TSVLSALALIVEEEKQCMQMHCTVVKSG-TGLFTSVLNALISVY 195
            M+++ +    F+F      S  +++ E  ++  ++H  V+++G      ++ N L+++Y
Sbjct: 294 SMQKEGL---GFSFKPNDAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMY 350

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            K            +  A  VF+ M E+D +SW ++++G  +N+  + A E    M E  
Sbjct: 351 AK---------SGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYD 401

Query: 256 GVAWNALISGYVHRE----------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
            V+WN++I      E          L+M+     L   T+ +++SA ++  L  +  Q+H
Sbjct: 402 QVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIH 461

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE-RDLVSWNAILSAYVS 364
           A +L    K        + NAL++ Y KCG++NE   IF +M E RD VSWN+++S Y+ 
Sbjct: 462 ALVL----KYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIH 517

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
             L+ +A  L           W +M  G                 RL+ F      FA  
Sbjct: 518 NELLHKAMDLV----------WFMMQKG----------------QRLDSF-----TFATI 546

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           +++CA +  LE G ++HA  + +  +S +  G+AL+ MY++CG ++ A+  F  MP  + 
Sbjct: 547 LSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNV 606

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
            SWN+MI+   +HG+G +A++L+ +M+ +G  PD +TF+ VLSAC+H G V+EG  +F++
Sbjct: 607 YSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKS 666

Query: 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL-AGCRIHG-N 602
           M   Y + P  +H++  +DLL RAGK  E  D I+S+P KP+  IW  +L A CR +G N
Sbjct: 667 MSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRN 726

Query: 603 IDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIE 662
            +LG +AAE L +L P +A  YVLL+NMYA+  +W+D A+ R  M++  VKKE GCSW+ 
Sbjct: 727 TELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVT 786

Query: 663 VDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTH 722
           + + VHVF+  D  HPE   +Y  L +L  +MR  GY+P TK+ L D+E + KE  LS H
Sbjct: 787 MKDGVHVFVAGDKLHPEKDLIYDKLRELNRKMRDAGYIPQTKYALFDLELENKEELLSYH 846

Query: 723 SEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDG 782
           SEK+AVAF L +      +R++KNLR+CGDCH+AF ++SK+VGR+IV+RD  RFHHF DG
Sbjct: 847 SEKIAVAFVLTR-QSALPIRIMKNLRVCGDCHSAFGYISKIVGRQIVLRDSNRFHHFEDG 905

Query: 783 KCSCGDYW 790
           KCSCGDYW
Sbjct: 906 KCSCGDYW 913



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 151/613 (24%), Positives = 258/613 (42%), Gaps = 98/613 (15%)

Query: 2   MMKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYC 61
           +  +++   +L NRY         +    S  AR +H   I  GF     + N LI+IY 
Sbjct: 95  LFSSSETFESLINRY---------QGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYV 145

Query: 62  KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMI 121
           +   L  A+ LFDE+                                   R+ V +  +I
Sbjct: 146 RIGDLGSAQKLFDEMSN---------------------------------RNLVTWACLI 172

Query: 122 TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEE-----KQCMQMHCTV 176
           + Y+ N     A   FRDM R    P+++ F S L A     +E      K  +Q+H  +
Sbjct: 173 SGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRA----CQESGPSGCKLGVQIHGLI 228

Query: 177 VKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV 236
            K+  G    V N LIS+Y  C+ S           AR VFD +  R+ +SW ++++ Y 
Sbjct: 229 SKTRYGSDVVVCNVLISMYGSCLDSA--------NDARSVFDGIGIRNSISWNSIISVYS 280

Query: 237 -KNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
            + D + A   F     E +G ++                     D F+  SV+      
Sbjct: 281 RRGDAVSAYDLFSSMQKEGLGFSFKP------------------NDAFSEFSVLEEGR-- 320

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
              R G++VHA+++RT         + + N LV +Y K G + +A  +F  M E+D VSW
Sbjct: 321 ---RKGREVHAHVIRTGLNDNK---VAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSW 374

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG-EEGLKLFSQMRLEGF 414
           N+++S        ++A  +F  M E + +SW  +I  L+ +     + +K F QM   G+
Sbjct: 375 NSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGW 434

Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
                 F   +++ + L   E   Q+HA ++        + GNAL++ Y +CG +     
Sbjct: 435 GLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEK 494

Query: 475 VFNTMPNV-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533
           +F  M    D VSWN+MI+    +    +A++L   M+++G   D  TF T+LSAC    
Sbjct: 495 IFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVA 554

Query: 534 LVKEGRRYFETMHGPYGIPPGEDH----YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
            ++ G           GI    +      +  +D+  + G+   A    + +P + +   
Sbjct: 555 TLERGMEVHAC-----GIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLR-NVYS 608

Query: 590 WEALLAGCRIHGN 602
           W ++++G   HG+
Sbjct: 609 WNSMISGYARHGH 621



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 131/475 (27%), Positives = 221/475 (46%), Gaps = 94/475 (19%)

Query: 34  ARSVHAHMISSGFKPREHII-NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
            R VHAH+I +G    +  I N L+++Y KS  +  A ++F+ + + D V+  +LI+   
Sbjct: 323 GREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLD 382

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHN-SNGHAAIELFRDMRRDDVKPDNFT 151
            ++  + A EMF+  P    D V +N++I A S + ++   A++ F  M R        T
Sbjct: 383 QNECSEDAAEMFSLMP--EYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVT 440

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           F ++LSA++ +   E    Q+H  V+K      T++ NAL+S Y KC           M 
Sbjct: 441 FINILSAVSSLSLHEVS-HQIHALVLKYCLSDDTAIGNALLSCYGKC---------GEMN 490

Query: 212 AARRVFDEMPE-RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
              ++F  M E RDE                               V+WN++ISGY+H E
Sbjct: 491 ECEKIFARMSETRDE-------------------------------VSWNSMISGYIHNE 519

Query: 271 LK---------MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
           L          M+    +LD FT+ +++SACA+      G +VHA  +R       E  +
Sbjct: 520 LLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRA----CLESDV 575

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
            V +ALV +Y KCG+++ A   F  MP R++ SWN+++S Y                   
Sbjct: 576 VVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGY------------------- 616

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
                       A++G+GE+ LKLF++M L+G  P    F G +++C+ +G +E G + H
Sbjct: 617 ------------ARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFE-H 663

Query: 442 AQLVHSGYDSS--LSAGNALITMYARCGVVEAANCVFNTMPNVDSV-SWNAMIAA 493
            + +   Y  S  +   + ++ +  R G ++      N+MP   +V  W  ++ A
Sbjct: 664 FKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGA 718



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 149/308 (48%), Gaps = 24/308 (7%)

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVS----WNAILSAYVSAGLIDEAKSLFEAMRER 381
           +L+  Y       EAR++  Q  +   V      N +++ YV  G +  A+ LF+ M  R
Sbjct: 104 SLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNR 163

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC--AGLGALENGRQ 439
           NL++W  +ISG  QNG  +E    F  M   GF P  YAF  A+ +C  +G    + G Q
Sbjct: 164 NLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQ 223

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN---CVFNTMPNVDSVSWNAMIAALGQ 496
           +H  +  + Y S +   N LI+MY  C  +++AN    VF+ +   +S+SWN++I+   +
Sbjct: 224 IHGLISKTRYGSDVVVCNVLISMYGSC--LDSANDARSVFDGIGIRNSISWNSIISVYSR 281

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
            G+   A +L+  M KEG+     +F     A +   +++EGRR    +H         D
Sbjct: 282 RGDAVSAYDLFSSMQKEGL---GFSFKPN-DAFSEFSVLEEGRRKGREVHAHVIRTGLND 337

Query: 557 HYAR----FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
           +        +++  ++G  ++A  V + +  K S   W +L++G     + +   + A +
Sbjct: 338 NKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVS-WNSLISGL----DQNECSEDAAE 392

Query: 613 LFQLMPHH 620
           +F LMP +
Sbjct: 393 MFSLMPEY 400


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 268/760 (35%), Positives = 417/760 (54%), Gaps = 68/760 (8%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+   T+L+  Y    +V   R++F   P   R+ V + +++T Y  +      +ELF  
Sbjct: 138 DVGVGTSLVDMYMKWHSVVDGRKVFEAMP--KRNVVTWTSLLTGYIQDGALSDVMELFFR 195

Query: 140 MRRDDVKPDNFTFTSVLSALAL--IVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           MR + V P++ TF SVLS +A   +V+  ++   +H   VK G      V N+L+++Y K
Sbjct: 196 MRAEGVWPNSVTFASVLSVVASQGMVDLGRR---VHAQSVKFGCCSTVFVCNSLMNMYAK 252

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY-LDAAREFLDGMSENVG 256
           C          L+  AR VF  M  RD +SW T+M G V N + L+A + F D  S    
Sbjct: 253 C---------GLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITM 303

Query: 257 VAWNALISGY-VHRELKMLMLRIQLDE-------FTYTSVISAC--ANSGLFRLGKQVHA 306
           +  +   +   +   +K L L  QL          +Y +V++A   A S   +LG  +  
Sbjct: 304 LTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDI 363

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL-------------- 352
           +LL + ++    ++  +N  +     + G V  A  +F++M E  +              
Sbjct: 364 FLLMSGSQNVVSWTAMINGCI-----QNGDVPLAAALFSRMREDGVAPNDFTYSTILTAS 418

Query: 353 ---------------------VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
                                +   A+L++Y      +EA S+F+ + +++++SW+ M++
Sbjct: 419 VASLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLT 478

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA-LENGRQLHAQLVHSGYD 450
             AQ G  +    +F +M + G KP ++  +  I +CA   A ++ GRQ HA  +     
Sbjct: 479 CYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCH 538

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
            +L   +AL++MYAR G +E+A C+F    + D VSWN+M++   QHG   +A++++ QM
Sbjct: 539 DALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQM 598

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
             EGI  D +TFL+V+  C HAGLV+EG+RYF++M   YGI P  +HYA  +DL  RAGK
Sbjct: 599 EAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGK 658

Query: 571 FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630
             EA  +I+ + F     +W  LL  C++H N++LG  AAE+L  L P  + TYVLLSN+
Sbjct: 659 LDEAMSLIEGMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNI 718

Query: 631 YANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQL 690
           Y+  G+W +   VRKLM  + VKKE GCSWI++ NKVH F+  D +HP ++ +Y  L  +
Sbjct: 719 YSAAGKWKEKDEVRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRAM 778

Query: 691 VLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRIC 750
             ++++ GY PDT F LH++  +QKE  L+ HSE+LA+AFGL+  P GA + + KNLR+C
Sbjct: 779 TTKLKQEGYCPDTSFALHEVAEEQKEAMLAMHSERLALAFGLIATPPGAPLHIFKNLRVC 838

Query: 751 GDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           GDCH   K +SK+  REIV+RD  RFHHF  G CSCGD+W
Sbjct: 839 GDCHTVIKMVSKIEDREIVMRDCSRFHHFNSGVCSCGDFW 878



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 133/334 (39%), Gaps = 72/334 (21%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
           +SL   +HA +I + ++    +   L+  Y K      A ++F  I Q D+V+       
Sbjct: 420 ASLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVS------- 472

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
                                     ++AM+T Y+   +   A  +F  M    +KP+ F
Sbjct: 473 --------------------------WSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEF 506

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           T +SV+ A A          Q H   +K        V +AL+S+Y +         +  +
Sbjct: 507 TISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYAR---------KGSI 557

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
            +A+ +F+   +RD +SW +M++GY ++ Y   A +    M                   
Sbjct: 558 ESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAE---------------- 601

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVT 329
                  I++D  T+ SVI  CA++GL   G++    + R     PT E        +V 
Sbjct: 602 ------GIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEH----YACMVD 651

Query: 330 LYWKCGKVNEARDIFNQM--PERDLVSWNAILSA 361
           LY + GK++EA  +   M  P   +V W  +L A
Sbjct: 652 LYSRAGKLDEAMSLIEGMSFPAGPMV-WRTLLGA 684



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 123/288 (42%), Gaps = 15/288 (5%)

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RLEGFKPCDYAFAGAITSCA 429
           A+  F+ +  RN L   +     A+ G   + L  F  + R  G +    A  G +  C 
Sbjct: 57  ARQAFDEIPHRNTLDHALFDH--ARRGSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCG 114

Query: 430 GLGALENGRQLHAQLVHSGYD-SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
            +     G+QLH   +  G+D   +  G +L+ MY +   V     VF  MP  + V+W 
Sbjct: 115 SVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWT 174

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP 548
           +++    Q G  +  +EL+ +M  EG+ P+ +TF +VLS     G+V  GRR        
Sbjct: 175 SLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRR-VHAQSVK 233

Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
           +G           +++  + G   EA+ V   +  +     W  L+AG  ++G+ DL   
Sbjct: 234 FGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVS-WNTLMAGLVLNGH-DL--- 288

Query: 609 AAEQLFQ-----LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
            A QLF      +      TY  +  + AN+ +   A ++   +  RG
Sbjct: 289 EALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRG 336


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/624 (39%), Positives = 346/624 (55%), Gaps = 50/624 (8%)

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           ++ V +E    D      +M  Y        AR   D   E   V +N +I  YV+  L 
Sbjct: 59  SKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLY 118

Query: 273 ---------MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
                    ML      D +T+  V+ AC+     R+G QVH  +++       + +L +
Sbjct: 119 VEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGL----DTNLFI 174

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA------------ 371
            NALV +Y KCG + EAR + +QMP RD+VSWN++++ Y  +G  D+A            
Sbjct: 175 GNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNL 234

Query: 372 -------------------------KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
                                     ++FE M ++NL+SW VMI+    N    E + LF
Sbjct: 235 NHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLF 294

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
            QM   G KP     A  + +C  L AL  GR+LH  +       +L   NAL+ MYA+C
Sbjct: 295 LQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKC 354

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G +E A  VF+ M   D VSW +M++A G+ G G  A+ L+ +ML  G  PD I F++VL
Sbjct: 355 GCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVL 414

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
           SAC+H GL+ +GR YF  M   YGI P  +H+A  +DL  RAG+  EA   I  +P +P+
Sbjct: 415 SACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPN 474

Query: 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKL 646
             +W ALL+ CR+H  +D+G+ AA+ LFQL P  +G YVLLSN+YA  G W D   VR  
Sbjct: 475 ERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYA 534

Query: 647 MRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFV 706
           M+  G+KK PG S +E++ +VH FL  D  HP+A+ +Y  L+ LV +M++LGY+P T+  
Sbjct: 535 MKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESA 594

Query: 707 LHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGR 766
           LHD+E + KE  L+ HSEKLA+ F ++    G  +R+ KNLR+CGDCH A K +SK+V R
Sbjct: 595 LHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSR 654

Query: 767 EIVVRDGKRFHHFRDGKCSCGDYW 790
            I+VRD  RFHHF +G CSCGDYW
Sbjct: 655 NIIVRDCNRFHHFSNGICSCGDYW 678



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 224/486 (46%), Gaps = 99/486 (20%)

Query: 62  KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMI 121
           K+L  ++++ + +E  + D      L+ AYSA     +AR +F+++  K  + VF+N MI
Sbjct: 52  KTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEK--NVVFFNVMI 109

Query: 122 TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSG- 180
            +Y +N+    A+ +F+ M      PD++TF  VL A + + +  +  +Q+H  +VK G 
Sbjct: 110 RSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGL-DNLRVGLQVHDAIVKVGL 168

Query: 181 -TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND 239
            T LF    NAL+++Y KC           +  AR+V D+MP RD +SW +M+ GY ++ 
Sbjct: 169 DTNLFIG--NALVAMYGKC---------GCLREARKVLDQMPYRDVVSWNSMVAGYAQSG 217

Query: 240 YLDAAREFLDGMS-----------------------ENVG--------------VAWNAL 262
             D A E    M                        ENV               ++WN +
Sbjct: 218 QFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVM 277

Query: 263 ISGYVHREL--KMLMLRIQLDE-------FTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
           I+ YV+  +  + + L +Q++E        T  S++ AC +     LG+++H Y+ +   
Sbjct: 278 IAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNL 337

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
           +P    +L + NAL+ +Y KCG + EARD+F++M  RD+VSW +++SAY           
Sbjct: 338 QP----NLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAY----------- 382

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
                                ++G G + + LF++M   G  P   AF   +++C+  G 
Sbjct: 383 --------------------GRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGL 422

Query: 434 LENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMI 491
           L+ GR     +    G    +     ++ ++ R G VE A      MP   +   W A++
Sbjct: 423 LDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALL 482

Query: 492 AALGQH 497
           +A   H
Sbjct: 483 SACRVH 488



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 6/129 (4%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP----QPDIVARTTLIA 89
           A S+   M   G KP    I  L+        L   R L   I     QP+++    L+ 
Sbjct: 290 AVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLD 349

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
            Y+    ++ AR++F+K  +++RD V + +M++AY  +  G+ A+ LF  M      PD+
Sbjct: 350 MYAKCGCLEEARDVFDK--MRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDS 407

Query: 150 FTFTSVLSA 158
             F SVLSA
Sbjct: 408 IAFVSVLSA 416



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 119/270 (44%), Gaps = 26/270 (9%)

Query: 439 QLHAQLV---HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
           +LH+++V   H   D +L+    L+  Y+  G    A  +F+     + V +N MI +  
Sbjct: 56  KLHSKIVINEHLRIDPTLAI--KLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYV 113

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
            +     A+ +++ ML     PD  TF  VL AC+    ++ G +  + +    G+    
Sbjct: 114 NNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAI-VKVGLDTNL 172

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
                 + +  + G   EA+ V+D +P++     W +++AG    G  D  ++  +++  
Sbjct: 173 FIGNALVAMYGKCGCLREARKVLDQMPYRDVVS-WNSMVAGYAQSGQFDDALEICKEMDS 231

Query: 616 L-MPHHAGTYVLLSNM--YANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLV 672
           L + H AGT   LS +  Y +L    +  +    M +R  KK    SW    N +    V
Sbjct: 232 LNLNHDAGTMASLSPVVCYTSL----ENVQYIHNMFERMTKKNL-ISW----NVMIAIYV 282

Query: 673 DDTAHPEAQAVYKYLEQLVLEMRKLGYVPD 702
           +++   EA +++       L+M + G  PD
Sbjct: 283 NNSMPNEAVSLF-------LQMEECGMKPD 305


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 272/770 (35%), Positives = 418/770 (54%), Gaps = 92/770 (11%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLK---LVYARTLFDEIPQPDIVARTTLIAAY 91
           R +HA MI +G     + +++LI+    S     L YA ++F+ I +P+++         
Sbjct: 4   RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLL--------- 54

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                                    +N M   ++ +S+  +A+ L+  M    + P+ +T
Sbjct: 55  ------------------------IWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYT 90

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           F  +L + A   +  ++  Q+H  V+K G  L   V  +LIS+YV+            + 
Sbjct: 91  FPFLLKSCAK-SKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQ---------NGRLE 140

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR-- 269
            AR+VFD+   RD +S+T ++TGY    Y+ +A++  D +     V+WNA+ISGY     
Sbjct: 141 DARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGN 200

Query: 270 -----EL--KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
                EL  +M+   ++ DE T  SV+SACA S    LG+QVH+++           +L 
Sbjct: 201 NKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGS----NLK 256

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
           + NAL+ LY KC                               G ++ A  LFE +  ++
Sbjct: 257 IVNALIDLYIKC-------------------------------GEVETACGLFEGLSYKD 285

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
           ++SW  +I G       +E L LF +M   G  P D      + +CA LGA+E GR +H 
Sbjct: 286 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHV 345

Query: 443 QLVH--SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
            +     G  ++ S   +LI MYA+CG +EAA  VF+++ N    SWNAMI     HG  
Sbjct: 346 YINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRA 405

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
             A +++ +M K  I PD ITF+ +LSAC+H+G++  GR  F +M   Y I P  +HY  
Sbjct: 406 NAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGC 465

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
            IDLL  +G F EA+++I+++  +P   IW +LL  C++HGN++LG   A+ L ++ P +
Sbjct: 466 MIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKN 525

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEA 680
            G+YVLLSN+YA  GRW++ A++R L+ D+G+KK PGCS IE+D+ VH F++ D  HP  
Sbjct: 526 PGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRN 585

Query: 681 QAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT 740
           + +Y  LE++ + + + G+VPDT  VL +ME + KE AL  HSEKLA+AFGL+    G  
Sbjct: 586 REIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTK 645

Query: 741 VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           + ++KNLR+C +CH A K +SK+  REI+ RD  RFHHFRDG CSC DYW
Sbjct: 646 LTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 695



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 165/388 (42%), Gaps = 72/388 (18%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R VH+ +   GF     I+N LID+Y K  ++  A  LF+ +   D+++  TLI  Y+
Sbjct: 238 LGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYT 297

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
              ++ L +E                              A+ LF++M R    P++ T 
Sbjct: 298 ---HMNLYKE------------------------------ALLLFQEMLRSGESPNDVTM 324

Query: 153 TSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
            S+L A A L   E  + + ++      G    +S   +LI +Y KC           + 
Sbjct: 325 LSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGD---------IE 375

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
           AA++VFD +  R   SW  M+ G+  +   +AA +    M +N                 
Sbjct: 376 AAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKN----------------- 418

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                 I+ D+ T+  ++SAC++SG+  LG+ +    ++ + K TP+  L     ++ L 
Sbjct: 419 -----EIEPDDITFVGLLSACSHSGMLDLGRHIFRS-MKEDYKITPK--LEHYGCMIDLL 470

Query: 332 WKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFE---AMRERNLLSWT 387
              G   EA ++ N M  E D V W ++L A    G ++  +S  +    +  +N  S+ 
Sbjct: 471 GHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYV 530

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           ++ +  A  G   E  K+ + +  +G K
Sbjct: 531 LLSNIYATAGRWNEVAKIRALLNDKGMK 558


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 246/580 (42%), Positives = 350/580 (60%), Gaps = 48/580 (8%)

Query: 223 RDELSW-TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE-----LKML-- 274
           RD+L    T++  Y K   L  AR+  D MS    V W ALI+GY   +     L +L  
Sbjct: 47  RDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPE 106

Query: 275 MLRIQL--DEFTYTSVISACANSGLFRL--GKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
           MLRI L  ++FT  S++ A +  G   +  G+Q+H   LR        +    N     +
Sbjct: 107 MLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLR--------YGYDSN-----V 153

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y  C                      AIL  Y     ++EA+ +F+ M  +N +SW  +I
Sbjct: 154 YVSC----------------------AILDMYARCHHLEEAQLIFDVMVSKNEVSWNALI 191

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
           +G A+ G G++   LFS M  E  KP  + ++  + +CA +G+LE G+ +HA ++  G  
Sbjct: 192 AGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEK 251

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
                GN L+ MYA+ G +E A  VF+ +   D VSWN+M+    QHG G  A++ +E+M
Sbjct: 252 LVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEM 311

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
           L+  I P+ ITFL VL+AC+HAGL+ EGR YF+ M   Y + P   HY   +DLL RAG 
Sbjct: 312 LRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMK-KYNVEPQISHYVTMVDLLGRAGH 370

Query: 571 FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630
              A   I  +P KP+A +W ALL  CR+H N++LG  AAE +F+L  H+ GT+VLL N+
Sbjct: 371 LDRAIQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNI 430

Query: 631 YANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQL 690
           YA  GRW+DAA+VRK+M++ GVKKEP CSW+E++N+VHVF+ DD AHP+ + ++   EQ+
Sbjct: 431 YALAGRWNDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQI 490

Query: 691 VLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRIC 750
             +++++GYVPD+  VL  M+  ++E  L  HSEKLA+AF L+  P G+T+R+ KN+RIC
Sbjct: 491 SDKIKEIGYVPDSSHVLLCMDQQEREAKLQYHSEKLALAFALLNTPPGSTIRIKKNIRIC 550

Query: 751 GDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           GDCH+AFKF+SK+V REI+VRD  RFHHF DG CSC DYW
Sbjct: 551 GDCHSAFKFVSKLVEREIIVRDTNRFHHFCDGACSCEDYW 590



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 155/300 (51%), Gaps = 19/300 (6%)

Query: 329 TLYWKC---GKVNEARDI----FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
           TL  +C    K+NE + I     N     DLV  N +L+ Y   G +  A+ LF+ M  R
Sbjct: 20  TLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSR 79

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE--NGRQ 439
           ++++WT +I+G +Q+   ++ L L  +M   G KP  +  A  + + +G+G+ +   GRQ
Sbjct: 80  DVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQ 139

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           LH   +  GYDS++    A++ MYARC  +E A  +F+ M + + VSWNA+IA   + G 
Sbjct: 140 LHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQ 199

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA 559
           G +A  L+  ML+E + P   T+ +VL AC   G +++G+     M     I  GE   A
Sbjct: 200 GDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALM-----IKWGEKLVA 254

Query: 560 ----RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
                 +D+  ++G   +AK V D L  K     W ++L G   HG   + +Q  E++ +
Sbjct: 255 FVGNTLLDMYAKSGSIEDAKKVFDRLA-KRDVVSWNSMLTGYSQHGLGKVALQRFEEMLR 313



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 117/482 (24%), Positives = 199/482 (41%), Gaps = 103/482 (21%)

Query: 20  LQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQP 79
           L+ C   N +     + +HA +++S F+    + N L+++Y K   LVYAR LFDE+   
Sbjct: 22  LKRCTHLNKLNE--GKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSR 79

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+V  T L                                 IT YS +     A+ L  +
Sbjct: 80  DVVTWTAL---------------------------------ITGYSQHDRPQDALLLLPE 106

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEK-QCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
           M R  +KP+ FT  S+L A + +   +  Q  Q+H   ++ G      V  A++ +Y +C
Sbjct: 107 MLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARC 166

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
                      +  A+ +FD M  ++E+SW  ++ GY +    D A              
Sbjct: 167 ---------HHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSN-------- 209

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                         ML   ++   FTY+SV+ ACA+ G    GK VHA +++   K    
Sbjct: 210 --------------MLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVA- 254

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
               V N L+ +Y K G + +A+ +F+++ +RD+VSWN++L+ Y                
Sbjct: 255 ---FVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGY---------------- 295

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
                          +Q+G G+  L+ F +M      P D  F   +T+C+  G L+ GR
Sbjct: 296 ---------------SQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGR 340

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQH 497
                +     +  +S    ++ +  R G ++ A    + MP    +  W A++ A   H
Sbjct: 341 HYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRMH 400

Query: 498 GN 499
            N
Sbjct: 401 KN 402



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 35/143 (24%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y+S L  C     +     + VHA MI  G K    + N L+D+Y KS  +  A+ +FD 
Sbjct: 222 YSSVLCACASMGSLEQ--GKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDR 279

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           + + D+V+                                 +N+M+T YS +  G  A++
Sbjct: 280 LAKRDVVS---------------------------------WNSMLTGYSQHGLGKVALQ 306

Query: 136 LFRDMRRDDVKPDNFTFTSVLSA 158
            F +M R  + P++ TF  VL+A
Sbjct: 307 RFEEMLRTRIAPNDITFLCVLTA 329


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 258/762 (33%), Positives = 402/762 (52%), Gaps = 76/762 (9%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKS--LKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           +  H HMI +G     +  ++L  +   S    L YAR +FDEIP+P+  A         
Sbjct: 47  KQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFA--------- 97

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM-RRDDVKPDNFT 151
                                   +N +I AY+   +   +I  F DM       P+ +T
Sbjct: 98  ------------------------WNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYT 133

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           F  ++ A A  V        +H   VKS  G    V N+LI  Y  C           + 
Sbjct: 134 FPFLIKAAAE-VSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGD---------LD 183

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM-SENVGVAWNALISGYVHRE 270
           +A +VF  + E+D +SW +M+ G+V+    D A E    M SE+V  +            
Sbjct: 184 SACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKAS------------ 231

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
                        T   V+SACA       G+QV +Y+           +L + NA++ +
Sbjct: 232 -----------HVTMVGVLSACAKIRNLEFGRQVCSYIEENRVN----VNLTLANAMLDM 276

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y KCG + +A+ +F+ M E+D V+W  +L  Y  +   + A+ +  +M ++++++W  +I
Sbjct: 277 YTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALI 336

Query: 391 SGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           S   QNG   E L +F +++L+   K         +++CA +GALE GR +H+ +   G 
Sbjct: 337 SAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGI 396

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
             +    +ALI MY++CG +E +  VFN++   D   W+AMI  L  HG G  A++++ +
Sbjct: 397 RMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYK 456

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
           M +  + P+ +TF  V  AC+H GLV E    F  M   YGI P E HYA  +D+L R+G
Sbjct: 457 MQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSG 516

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629
              +A   I+++P  PS  +W ALL  C+IH N++L   A  +L +L P + G +VLLSN
Sbjct: 517 YLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSN 576

Query: 630 MYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQ 689
           +YA LG+W++ + +RK MR  G+KKEPGCS IE+D  +H FL  D AHP ++ VY  L +
Sbjct: 577 IYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHE 636

Query: 690 LVLEMRKLGYVPDTKFVLHDMESDQ-KEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLR 748
           ++ +++  GY P+   VL  +E ++ KE +L+ HSEKLA+ +GL+       +RV+KNLR
Sbjct: 637 VMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLR 696

Query: 749 ICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +CGDCH+  K +S++  REI+VRD  RFHHFR+G+CSC D+W
Sbjct: 697 VCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 115/483 (23%), Positives = 217/483 (44%), Gaps = 102/483 (21%)

Query: 167 KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDEL 226
           +Q  Q H  ++++GT  F+   +A      K  +   +SS + +  AR+VFDE+P+ +  
Sbjct: 44  RQLKQTHGHMIRTGT--FSDPYSA-----SKLFAMAALSSFASLEYARKVFDEIPKPNSF 96

Query: 227 SWTTMMTGYVKN-DYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTY 285
           +W T++  Y    D + +   FLD +SE+                      +   +++T+
Sbjct: 97  AWNTLIRAYASGPDPVLSIWAFLDMVSES----------------------QCYPNKYTF 134

Query: 286 TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFN 345
             +I A A      LG+ +H   +++         + V N+L+  Y+ CG ++ A  +F 
Sbjct: 135 PFLIKAAAEVSSLSLGQSLHGMAVKSAVGS----DVFVANSLIHCYFSCGDLDSACKVFT 190

Query: 346 QMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKL 405
            + E+D+VSWN++++ +V  G  D+A                               L+L
Sbjct: 191 TIKEKDVVSWNSMINGFVQKGSPDKA-------------------------------LEL 219

Query: 406 FSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465
           F +M  E  K       G +++CA +  LE GRQ+ + +  +  + +L+  NA++ MY +
Sbjct: 220 FKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTK 279

Query: 466 CGVV-------------------------------EAANCVFNTMPNVDSVSWNAMIAAL 494
           CG +                               EAA  V N+MP  D V+WNA+I+A 
Sbjct: 280 CGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAY 339

Query: 495 GQHGNGARA-IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
            Q+G    A I  +E  L++ +  ++IT ++ LSAC   G ++ G R+  +    +GI  
Sbjct: 340 EQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELG-RWIHSYIKKHGIRM 398

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
                +  I +  + G   ++++V +S+  K    +W A++ G  +HG    G +A +  
Sbjct: 399 NFHVTSALIHMYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGGLAMHG---CGNEAVDMF 454

Query: 614 FQL 616
           +++
Sbjct: 455 YKM 457


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/624 (39%), Positives = 346/624 (55%), Gaps = 50/624 (8%)

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           ++ V +E    D      +M  Y        AR   D   E   V +N +I  YV+  L 
Sbjct: 59  SKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLY 118

Query: 273 ---------MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
                    ML      D +T+  V+ AC+     R+G QVH  +++       + +L +
Sbjct: 119 VEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGL----DTNLFI 174

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA------------ 371
            NALV +Y KCG + EAR + +QMP RD+VSWN++++ Y  +G  D+A            
Sbjct: 175 GNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNL 234

Query: 372 -------------------------KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
                                     ++FE M ++NL+SW VMI+    N    E + LF
Sbjct: 235 NHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLF 294

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
            QM   G KP     A  + +C  L AL  GR+LH  +       +L   NAL+ MYA+C
Sbjct: 295 LQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKC 354

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G +E A  VF+ M   D VSW +M++A G+ G G  A+ L+ +ML  G  PD I F++VL
Sbjct: 355 GCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVL 414

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
           SAC+H GL+ +GR YF  M   YGI P  +H+A  +DL  RAG+  EA   I  +P +P+
Sbjct: 415 SACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPN 474

Query: 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKL 646
             +W ALL+ CR+H  +D+G+ AA+ LFQL P  +G YVLLSN+YA  G W D   VR  
Sbjct: 475 ERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYA 534

Query: 647 MRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFV 706
           M+  G+KK PG S +E++ +VH FL  D  HP+A+ +Y  L+ LV +M++LGY+P T+  
Sbjct: 535 MKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESA 594

Query: 707 LHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGR 766
           LHD+E + KE  L+ HSEKLA+ F ++    G  +R+ KNLR+CGDCH A K +SK+V R
Sbjct: 595 LHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSR 654

Query: 767 EIVVRDGKRFHHFRDGKCSCGDYW 790
            I+VRD  RFHHF +G CSCGDYW
Sbjct: 655 NIIVRDCNRFHHFSNGICSCGDYW 678



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 224/486 (46%), Gaps = 99/486 (20%)

Query: 62  KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMI 121
           K+L  ++++ + +E  + D      L+ AYSA     +AR +F+++  K  + VF+N MI
Sbjct: 52  KTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEK--NVVFFNVMI 109

Query: 122 TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSG- 180
            +Y +N+    A+ +F+ M      PD++TF  VL A + + +  +  +Q+H  +VK G 
Sbjct: 110 RSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGL-DNLRVGLQVHDAIVKVGL 168

Query: 181 -TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND 239
            T LF    NAL+++Y KC           +  AR+V D+MP RD +SW +M+ GY ++ 
Sbjct: 169 DTNLFIG--NALVAMYGKC---------GCLREARKVLDQMPYRDVVSWNSMVAGYAQSG 217

Query: 240 YLDAAREFLDGMS-----------------------ENVG--------------VAWNAL 262
             D A E    M                        ENV               ++WN +
Sbjct: 218 QFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVM 277

Query: 263 ISGYVHREL--KMLMLRIQLDE-------FTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
           I+ YV+  +  + + L +Q++E        T  S++ AC +     LG+++H Y+ +   
Sbjct: 278 IAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNL 337

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
           +P    +L + NAL+ +Y KCG + EARD+F++M  RD+VSW +++SAY           
Sbjct: 338 RP----NLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAY----------- 382

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
                                ++G G + + LF++M   G  P   AF   +++C+  G 
Sbjct: 383 --------------------GRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGL 422

Query: 434 LENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMI 491
           L+ GR     +    G    +     ++ ++ R G VE A      MP   +   W A++
Sbjct: 423 LDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALL 482

Query: 492 AALGQH 497
           +A   H
Sbjct: 483 SACRVH 488



 Score = 55.8 bits (133), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 6/129 (4%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ----PDIVARTTLIA 89
           A S+   M   G KP    I  L+        L   R L   I +    P+++    L+ 
Sbjct: 290 AVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLD 349

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
            Y+    ++ AR++F+K  +++RD V + +M++AY  +  G+ A+ LF  M      PD+
Sbjct: 350 MYAKCGCLEEARDVFDK--MRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDS 407

Query: 150 FTFTSVLSA 158
             F SVLSA
Sbjct: 408 IAFVSVLSA 416



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 119/270 (44%), Gaps = 26/270 (9%)

Query: 439 QLHAQLV---HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
           +LH+++V   H   D +L+    L+  Y+  G    A  +F+     + V +N MI +  
Sbjct: 56  KLHSKIVINEHLRIDPTLAI--KLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYV 113

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
            +     A+ +++ ML     PD  TF  VL AC+    ++ G +  + +    G+    
Sbjct: 114 NNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAI-VKVGLDTNL 172

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
                 + +  + G   EA+ V+D +P++     W +++AG    G  D  ++  +++  
Sbjct: 173 FIGNALVAMYGKCGCLREARKVLDQMPYRDVVS-WNSMVAGYAQSGQFDDALEICKEMDS 231

Query: 616 L-MPHHAGTYVLLSNM--YANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLV 672
           L + H AGT   LS +  Y +L    +  +    M +R  KK    SW    N +    V
Sbjct: 232 LNLNHDAGTMASLSPVVCYTSL----ENVQYIHNMFERMTKKNL-ISW----NVMIAIYV 282

Query: 673 DDTAHPEAQAVYKYLEQLVLEMRKLGYVPD 702
           +++   EA +++       L+M + G  PD
Sbjct: 283 NNSMPNEAVSLF-------LQMEECGMKPD 305


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 269/762 (35%), Positives = 401/762 (52%), Gaps = 108/762 (14%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           ++   +HA ++  GF+    + N LI +  KS  L  AR +FD                 
Sbjct: 220 AIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDN---------------- 263

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                            ++ +D+V +N+MI  +  N     A E F +M+    KP + T
Sbjct: 264 -----------------MENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHAT 306

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC--VSSPFVSSRSL 209
           F SV+ + A + +E      +HC  +KSG     +VL AL+    KC  +   F S  SL
Sbjct: 307 FASVIKSCASL-KELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAF-SLFSL 364

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           M   + V         +SWT M++GY++N   D A      M                 R
Sbjct: 365 MHGVQSV---------VSWTAMISGYLQNGDTDQAVNLFSLM----------------RR 399

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
           E       ++ + FTY+++++      +F    ++HA +++T                  
Sbjct: 400 E------GVKPNHFTYSTILTV--QHAVFI--SEIHAEVIKTN----------------- 432

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
            Y K   V                   A+L A+V  G I +A  +FE +  +++++W+ M
Sbjct: 433 -YEKSSSVG-----------------TALLDAFVKIGNISDAVKVFELIETKDVIAWSAM 474

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC-AGLGALENGRQLHAQLVHSG 448
           ++G AQ G  EE  K+F Q+  EG KP ++ F   I +C A   ++E G+Q HA  +   
Sbjct: 475 LAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLR 534

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
            +++L   ++L+T+YA+ G +E+A+ +F      D VSWN+MI+   QHG   +A+E++E
Sbjct: 535 LNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFE 594

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568
           +M K  +  D ITF+ V+SAC HAGLV +G+ YF  M   + I P  +HY+  IDL  RA
Sbjct: 595 EMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRA 654

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628
           G   +A D+I+ +PF P+A +W  +LA  R+H NI+LG  AAE++  L P H+  YVLLS
Sbjct: 655 GMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLS 714

Query: 629 NMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLE 688
           N+YA  G W +   VRKLM  R VKKEPG SWIEV NK + FL  D +HP +  +Y  L 
Sbjct: 715 NIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKLS 774

Query: 689 QLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLR 748
           +L   +R +GY PDT +V HD+E +QKE  LS HSE+LA+AFGL+       ++++KNLR
Sbjct: 775 ELNTRLRDVGYQPDTNYVFHDIEDEQKETILSHHSERLAIAFGLIATLPEIPLQIVKNLR 834

Query: 749 ICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +CGDCH+  K +S V  R IVVRD  RFHHF+ G CSCGDYW
Sbjct: 835 VCGDCHSFIKLVSLVEKRYIVVRDSNRFHHFKGGLCSCGDYW 876



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 152/521 (29%), Positives = 237/521 (45%), Gaps = 84/521 (16%)

Query: 98  KLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLS 157
           + A+++F++TPL  RD   +N ++  YS       A+ LF  + R  + PD++T + VLS
Sbjct: 53  RFAQQLFDQTPL--RDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLS 110

Query: 158 ALA----LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
             A      V E     Q+HC  VK G     SV N+L+ +Y K  +         +   
Sbjct: 111 VCAGSFNGTVGE-----QVHCQCVKCGLVHHLSVGNSLVDMYTKTGN---------VRDG 156

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           RRVFDEM +RD +SW +++TGY  N + D   E    M           + GY       
Sbjct: 157 RRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQ----------VEGY------- 199

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
                + D +T ++VI+A AN G   +G Q+HA ++    K   E    V N+L+++  K
Sbjct: 200 -----RPDYYTVSTVIAALANQGAVAIGMQIHALVV----KLGFETERLVCNSLISMLSK 250

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
            G + +AR +F+ M  +D VSWN+                               MI+G 
Sbjct: 251 SGMLRDARVVFDNMENKDSVSWNS-------------------------------MIAGH 279

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL 453
             NG   E  + F+ M+L G KP    FA  I SCA L  L   R LH + + SG  ++ 
Sbjct: 280 VINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQ 339

Query: 454 SAGNALITMYARCGVVEAANCVFNTMPNVDS-VSWNAMIAALGQHGNGARAIELYEQMLK 512
           +   AL+    +C  ++ A  +F+ M  V S VSW AMI+   Q+G+  +A+ L+  M +
Sbjct: 340 NVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRR 399

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
           EG+ P+  T+ T+L+   HA  + E   + E +   Y            +D   + G  S
Sbjct: 400 EGVKPNHFTYSTILTV-QHAVFISE--IHAEVIKTNY--EKSSSVGTALLDAFVKIGNIS 454

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
           +A  V + +  K     W A+LAG    G  +   +   QL
Sbjct: 455 DAVKVFELIETK-DVIAWSAMLAGYAQAGETEEAAKIFHQL 494



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 132/534 (24%), Positives = 239/534 (44%), Gaps = 85/534 (15%)

Query: 86  TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
           +L+  Y+ + NV+  R +F++  +  RD V +N+++T YS N       ELF  M+ +  
Sbjct: 142 SLVDMYTKTGNVRDGRRVFDE--MGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGY 199

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVS 205
           +PD +T ++V++ALA         MQ+H  VVK G      V N+LIS+         +S
Sbjct: 200 RPDYYTVSTVIAALA-NQGAVAIGMQIHALVVKLGFETERLVCNSLISM---------LS 249

Query: 206 SRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265
              ++  AR VFD M  +D +SW +M+ G+V N     A E  + M              
Sbjct: 250 KSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQ------------- 296

Query: 266 YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
                    +   +    T+ SVI +CA+     L + +H   L++           V  
Sbjct: 297 ---------LAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQN----VLT 343

Query: 326 ALVTLYWKCGKVNEARDIFNQMPE-RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
           AL+    KC ++++A  +F+ M   + +VSW A++S Y+  G  D+A             
Sbjct: 344 ALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQA------------- 390

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
                             + LFS MR EG KP  + ++  +T    +   E    +HA++
Sbjct: 391 ------------------VNLFSLMRREGVKPNHFTYSTILTVQHAVFISE----IHAEV 428

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
           + + Y+ S S G AL+  + + G +  A  VF  +   D ++W+AM+A   Q G    A 
Sbjct: 429 IKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAA 488

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNH-AGLVKEGRRYFETMHGPYGIPPGEDH----YA 559
           +++ Q+ +EGI P+  TF ++++AC      V++G+++       Y I    ++     +
Sbjct: 489 KIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFH-----AYAIKLRLNNALCVSS 543

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
             + L  + G    A ++      +     W ++++G   HG     ++  E++
Sbjct: 544 SLVTLYAKRGNIESAHEIFKRQKERDLVS-WNSMISGYAQHGQAKKALEVFEEM 596



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/429 (24%), Positives = 184/429 (42%), Gaps = 74/429 (17%)

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A+++FD+ P RD      ++  Y + D    A                      +H  + 
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEA----------------------LHLFVS 92

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           +    +  D +T + V+S CA S    +G+QVH   +    K      L V N+LV +Y 
Sbjct: 93  LYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCV----KCGLVHHLSVGNSLVDMYT 148

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           K G V + R +                               F+ M +R+++SW  +++G
Sbjct: 149 KTGNVRDGRRV-------------------------------FDEMGDRDVVSWNSLLTG 177

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
            + N + ++  +LF  M++EG++P  Y  +  I + A  GA+  G Q+HA +V  G+++ 
Sbjct: 178 YSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETE 237

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
               N+LI+M ++ G++  A  VF+ M N DSVSWN+MIA    +G    A E +  M  
Sbjct: 238 RLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQL 297

Query: 513 EGILPDRITFLTVLSAC---NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
            G  P   TF +V+ +C      GLV    R         G+   ++     +  L +  
Sbjct: 298 AGAKPTHATFASVIKSCASLKELGLV----RVLHCKTLKSGLSTNQNVLTALMVALTKCK 353

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM------PHHAGT 623
           +  +A  +   +    S   W A+++G   +G+ D  +     LF LM      P+H   
Sbjct: 354 EIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAV----NLFSLMRREGVKPNHFTY 409

Query: 624 YVLLSNMYA 632
             +L+  +A
Sbjct: 410 STILTVQHA 418


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 268/715 (37%), Positives = 384/715 (53%), Gaps = 77/715 (10%)

Query: 80   DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
            DI+   +L+  YS   +V+ A + F  T  +  + V +N M+ AY    N   + E+FR 
Sbjct: 396  DIILEGSLLDLYSKCADVETAHKFFLXT--ETENIVLWNVMLVAYGQLDNLSDSFEIFRQ 453

Query: 140  MRRDDVKPDNFTFTSVL----SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
            M+ + + P+ FT+ S+L    S  AL + E     Q+H  V+K+G  L   V + LI +Y
Sbjct: 454  MQMEGMIPNQFTYPSILRTCTSLGALYLGE-----QIHTHVIKTGFQLNVYVCSVLIDMY 508

Query: 196  VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
             K            +  A R+   +PE D +SWT M+ GYV++D    A +  + M E  
Sbjct: 509  AK---------YGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEM-EYR 558

Query: 256  GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
            G                     IQ D   + S ISACA     R G+Q+HA         
Sbjct: 559  G---------------------IQFDNIGFASAISACAGIRALRQGQQIHA----QSYAA 593

Query: 316  TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
                 L +NNAL++LY +C                               G I EA   F
Sbjct: 594  GFGADLSINNALISLYARC-------------------------------GRIQEAYLAF 622

Query: 376  EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
            E + ++N +SW  ++SGLAQ+GY EE L++F +M     +   + +  AI++ A L  ++
Sbjct: 623  EKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIK 682

Query: 436  NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
             G+Q+H+ ++ +GYDS     N+LI++YA+ G +  A   FN M   + +SWNAMI    
Sbjct: 683  QGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYS 742

Query: 496  QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
            QHG G  A+ L+E+M   GI+P+ +TF+ VLSAC+H GLVKEG  YFE+M   + + P  
Sbjct: 743  QHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKS 802

Query: 556  DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
            +HY   +DLL RAG+   A + I  +P    A IW  LL+ C IH NI++G +AA  L +
Sbjct: 803  EHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLE 862

Query: 616  LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
            L P  + TYVL+SN+YA   +W      RKLM+D GVKKEPG SWIEV N VH F   D 
Sbjct: 863  LEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGDK 922

Query: 676  AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKL 735
             HP    +Y+Y+  L     ++GYV D+  +L++ E  QK+     HSEKLA+AFGL+ L
Sbjct: 923  LHPLTNQIYEYIGHLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSL 982

Query: 736  PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
                 +RV+KNLR+C DCHN  K++SK+  R I+VRD  RFHHF  G CSC D+W
Sbjct: 983  GNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 156/577 (27%), Positives = 261/577 (45%), Gaps = 84/577 (14%)

Query: 41  MISSGFKPREHIINRLI------DIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           M++ G  P  +    ++      DI    +K V++RT +       +VA   LI  YS +
Sbjct: 150 MLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVA-NLLIDLYSKN 208

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
             ++ A+++FN   + M+D V + AMI+  S N     AI LF DM   ++ P  +  +S
Sbjct: 209 GYIESAKKVFN--CICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSS 266

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           VLSA +  ++  +   Q+HC V+K G    T V N L+++Y +        SR L+ +A 
Sbjct: 267 VLSA-STKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSR--------SRKLI-SAE 316

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
           R+F  M  RD +S+ ++++G V+  + D A E    M  +                    
Sbjct: 317 RIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDC------------------- 357

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
              ++ D  T  S++SACA+ G    G Q+H++ ++          + +  +L+ LY KC
Sbjct: 358 ---LKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSA----DIILEGSLLDLYSKC 410

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
             V  A   F      ++V WN +L AY   G +D     FE                  
Sbjct: 411 ADVETAHKFFLXTETENIVLWNVMLVAY---GQLDNLSDSFE------------------ 449

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
                     +F QM++EG  P  + +   + +C  LGAL  G Q+H  ++ +G+  ++ 
Sbjct: 450 ----------IFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVY 499

Query: 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
             + LI MYA+ G +  A  +   +P  D VSW AMIA   QH   + A++L+E+M   G
Sbjct: 500 VCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRG 559

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHG-PYGIPPGEDHYAR--FIDLLCRAGKF 571
           I  D I F + +SAC     +++G++    +H   Y    G D       I L  R G+ 
Sbjct: 560 IQFDNIGFASAISACAGIRALRQGQQ----IHAQSYAAGFGADLSINNALISLYARCGRI 615

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
            EA    + +  K +   W +L++G    G  +  +Q
Sbjct: 616 QEAYLAFEKIGDKNNIS-WNSLVSGLAQSGYFEEALQ 651



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 152/602 (25%), Positives = 270/602 (44%), Gaps = 112/602 (18%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L   +H  +I  GF    ++ N L+ +Y +S KL+ A  +F                   
Sbjct: 279 LGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIF------------------- 319

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                         + +  RD V YN++I+          A+ELF  M+RD +KPD  T 
Sbjct: 320 --------------STMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITV 365

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            S+LSA A +    K  MQ+H   +K+G      +  +L+ +Y KC           +  
Sbjct: 366 ASLLSACASVGALHKG-MQLHSHAIKAGMSADIILEGSLLDLYSKCAD---------VET 415

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A + F      + + W  M+  Y + D L  + E                         +
Sbjct: 416 AHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFR----------------------Q 453

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           M M  +  ++FTY S++  C + G   LG+Q+H ++++T      + ++ V + L+ +Y 
Sbjct: 454 MQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKT----GFQLNVYVCSVLIDMYA 509

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           K G++  A  I  ++PE D+VSW A+++ YV   +  EA                     
Sbjct: 510 KYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEA--------------------- 548

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
                     L+LF +M   G +  +  FA AI++CAG+ AL  G+Q+HAQ   +G+ + 
Sbjct: 549 ----------LQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGAD 598

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           LS  NALI++YARCG ++ A   F  + + +++SWN++++ L Q G    A++++ +ML+
Sbjct: 599 LSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLR 658

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
                +  T+ + +SA      +K+G++   +M    G     +     I L  ++G  S
Sbjct: 659 TEAEVNMFTYGSAISAAASLANIKQGQQ-IHSMVLKTGYDSEREVSNSLISLYAKSGSIS 717

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ------LMPHHAGTYVL 626
           +A    + +  + +   W A++ G   HG    G++A  +LF+      +MP+H     +
Sbjct: 718 DAWREFNDMS-ERNVISWNAMITGYSQHG---CGMEAL-RLFEEMKVCGIMPNHVTFVGV 772

Query: 627 LS 628
           LS
Sbjct: 773 LS 774



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 123/494 (24%), Positives = 220/494 (44%), Gaps = 109/494 (22%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y S L+ C     +   L   +H H+I +GF+   ++ + LID+Y K  +L  A  +   
Sbjct: 466 YPSILRTCTSLGALY--LGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRR 523

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P+ D+V+ T +IA Y   D       MF++                          A++
Sbjct: 524 LPEDDVVSWTAMIAGYVQHD-------MFSE--------------------------ALQ 550

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LF +M    ++ DN  F S +SA A I    +Q  Q+H     +G G   S+ NALIS+Y
Sbjct: 551 LFEEMEYRGIQFDNIGFASAISACAGI-RALRQGQQIHAQSYAAGFGADLSINNALISLY 609

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            +C           +  A   F+++ +++ +SW ++++G  ++ Y + A +         
Sbjct: 610 ARC---------GRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVF------- 653

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                          ++ML    +++ FTY S ISA A+    + G+Q+H+ +L+T    
Sbjct: 654 ---------------VRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDS 698

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
             E    V+N+L++LY K G +++A   FN M ER+++SWNA+++ Y             
Sbjct: 699 ERE----VSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGY------------- 741

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
                             +Q+G G E L+LF +M++ G  P    F G +++C+ +G ++
Sbjct: 742 ------------------SQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVK 783

Query: 436 NGRQLHAQL--VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIA 492
            G      +  +H     S      ++ +  R G ++ A      MP   D++ W  +++
Sbjct: 784 EGLDYFESMFKIHDLVPKS-EHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLS 842

Query: 493 ALGQHGN---GARA 503
           A   H N   G RA
Sbjct: 843 ACVIHKNIEIGERA 856



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 129/511 (25%), Positives = 217/511 (42%), Gaps = 86/511 (16%)

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ 171
           R    +N MI  +    +      LFR M  + + P+ +TF  VL          K C+ 
Sbjct: 122 RSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVL----------KACV- 170

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
                   G   F          YVK V S     R+        FD  P    L    +
Sbjct: 171 -------GGDIAFN---------YVKQVHS-----RTFYYG----FDSSP----LVANLL 201

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY----VHRELKMLMLRIQLDE----- 282
           +  Y KN Y+++A++  + +     V W A+ISG     +  E  +L   +   E     
Sbjct: 202 IDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTP 261

Query: 283 FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARD 342
           +  +SV+SA     LF LG+Q+H  +++            V N LV LY +         
Sbjct: 262 YVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSET----YVCNGLVALYSR--------- 308

Query: 343 IFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG 402
                  R L+S                A+ +F  M  R+ +S+  +ISGL Q G+ +  
Sbjct: 309 ------SRKLIS----------------AERIFSTMNSRDGVSYNSLISGLVQQGFSDRA 346

Query: 403 LKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITM 462
           L+LF++M+ +  KP     A  +++CA +GAL  G QLH+  + +G  + +    +L+ +
Sbjct: 347 LELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDL 406

Query: 463 YARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF 522
           Y++C  VE A+  F      + V WN M+ A GQ  N + + E++ QM  EG++P++ T+
Sbjct: 407 YSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTY 466

Query: 523 LTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582
            ++L  C   G +  G +   T     G        +  ID+  + G+ + A  ++  LP
Sbjct: 467 PSILRTCTSLGALYLGEQ-IHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP 525

Query: 583 FKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
            +     W A++AG   H      +Q  E++
Sbjct: 526 -EDDVVSWTAMIAGYVQHDMFSEALQLFEEM 555



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 81/199 (40%), Gaps = 1/199 (0%)

Query: 403 LKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITM 462
           ++L + M   G +     +   +  C   G+L    +LH ++  SG+D      ++L+  
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 463 YARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF 522
           Y R G    A  VF+   N    SWN MI       +  +   L+ +ML EGI P+  TF
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 523 LTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582
             VL AC    +     +   +    YG           IDL  + G    AK V + + 
Sbjct: 163 AGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCIC 222

Query: 583 FKPSAPIWEALLAGCRIHG 601
            K     W A+++G   +G
Sbjct: 223 MKDIVT-WVAMISGLSQNG 240


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/532 (41%), Positives = 340/532 (63%), Gaps = 26/532 (4%)

Query: 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
           D  +  +V+ ACA+ G +  GK VH   +R+ +       L V NALV +Y KCG V+EA
Sbjct: 12  DVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFE----DLFVGNALVDMYAKCGMVDEA 67

Query: 341 RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL----LSWTVMISGLAQN 396
             +F+++ E+D+VSWNA+++ Y   G  ++A  LFE MRE N+    +SW+ +I+  AQ 
Sbjct: 68  SKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQR 127

Query: 397 GYGEEGLKLFSQMR-------LEGF----------KPCDYAFAGAITSCAGLGALENGRQ 439
           G G E L +F +M+       LE F          KP  +  + A+ +CA L AL  GRQ
Sbjct: 128 GLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQ 187

Query: 440 LHAQLVHSGYDSS-LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           +HA ++ + +DS+ L   N LI MYA+ G ++ A  VF+ +   + VSW +++   G HG
Sbjct: 188 IHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHG 247

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
            G  A+E++++M + G+ PD +T L VL AC+H+G++ +G  +F +M   +G+ PG++HY
Sbjct: 248 RGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHY 307

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
           A  +DLL RAG+ +EA ++I+ +  +PS+ +W ALL+GCRIH N++LG  AA+QL +L  
Sbjct: 308 ACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNS 367

Query: 619 HHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHP 678
            + G+Y LLSN+YAN  RW D ARVR LM++ G++K PGCSW++       F V D  HP
Sbjct: 368 ENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKTHP 427

Query: 679 EAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGG 738
           +++ +Y+ L  L   ++ LGYVP+T F LHD++ ++K   L  HSEKLA+A+G++    G
Sbjct: 428 QSKQIYEILRSLTQRIKVLGYVPETSFALHDVDDEEKVDLLFEHSEKLALAYGILISAPG 487

Query: 739 ATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           A +R+ KNLR+CGDCHNA  ++S ++  EI++RD  RFHHF+ G CSC  YW
Sbjct: 488 APIRITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFKKGSCSCSGYW 539



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 151/357 (42%), Gaps = 72/357 (20%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            ++VH   + SG      + N L+D+Y K   +  A  +FD I + D+V+   ++  YS 
Sbjct: 32  GKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVFDRIKEKDVVSWNAMVNGYSQ 91

Query: 94  SDNVKLAREMFNKTPLKMRD------TVFYNAMITAYSHNSNGHAAIELFRDMRRDD--- 144
               + A  +F     KMR+       V ++A+I A++    G   +++FR+M+  +   
Sbjct: 92  IGRFEDALGLFE----KMREENIELNVVSWSAVIAAFAQRGLGCETLDVFREMQHGEAND 147

Query: 145 --------------VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSG-TGLFTSVLN 189
                         VKP+ FT +  L A A +    +   Q+H  ++++     F  V N
Sbjct: 148 ALELFSWMFKQDGLVKPNCFTISCALIACARLA-ALRLGRQIHAYILRNHFDSAFLYVAN 206

Query: 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD 249
            LI +Y K            +  AR VFD + +++ +SWT++MTGY  +     A E  D
Sbjct: 207 CLIDMYAKSGD---------IDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFD 257

Query: 250 GMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
            M   VG                     +Q D  T   V+ AC++SG+   G +    + 
Sbjct: 258 EM-RRVG---------------------LQPDGVTLLVVLYACSHSGMIDQGIEFFNSM- 294

Query: 310 RTEAKPTPEFSLPVNN----ALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
                 + EF +         +V L  + G++NEA ++   M  E   + W A+LS 
Sbjct: 295 ------SKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSG 345



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 74/134 (55%), Gaps = 1/134 (0%)

Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
           +P   +    + +CA +GA  +G+ +H   V SG    L  GNAL+ MYA+CG+V+ A+ 
Sbjct: 10  RPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASK 69

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
           VF+ +   D VSWNAM+    Q G    A+ L+E+M +E I  + +++  V++A    GL
Sbjct: 70  VFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGL 129

Query: 535 VKEGRRYFETM-HG 547
             E    F  M HG
Sbjct: 130 GCETLDVFREMQHG 143



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 90/235 (38%), Gaps = 75/235 (31%)

Query: 33  LARSVHAHMISSGFKPR-EHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           L R +HA+++ + F     ++ N LID+Y KS  +  AR +FD + Q + V+ T+L    
Sbjct: 184 LGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSL---- 239

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                                        +T Y  +  G  A+E+F +MRR  ++PD  T
Sbjct: 240 -----------------------------MTGYGMHGRGKEALEVFDEMRRVGLQPDGVT 270

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
              VL A +            H  ++  G   F S+                        
Sbjct: 271 LLVVLYACS------------HSGMIDQGIEFFNSM------------------------ 294

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS-ENVGVAWNALISG 265
              + F  +P ++  +    + G  +   L+ A E ++GM  E   + W AL+SG
Sbjct: 295 --SKEFGVIPGQEHYACMVDLLG--RAGRLNEAMELIEGMQMEPSSIVWVALLSG 345


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 204/370 (55%), Positives = 276/370 (74%)

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
            AG + +CA + ALE G+Q+HA ++  G++  +S  N L+ MY +CG +E A  VF+ + 
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
             D  SWNAMI+ L QHG G  A+ L+EQML+ G+ P++ITF+ VLS C+HAGLV EGR 
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
           YF++M   +GI P  +HY+  +DL  RAG   EA + I+ +P +P+A +W +LL  CR+H
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 601 GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSW 660
           GNI+L  +A EQL +L P + GTYVLLSN+YA  GRWDDA +VRK+M+DR VKKEPGCSW
Sbjct: 181 GNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSW 240

Query: 661 IEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALS 720
           IEV NKVH F+V D++HP+ + +Y+ LE L L+M+  GY+P+T FVLHD+E +QKE+ L 
Sbjct: 241 IEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILG 300

Query: 721 THSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFR 780
            HSEKLA+AFG++  P G T+RV+KNLR+CGDCH A KF+S++V REIV+RD  RFHHF+
Sbjct: 301 HHSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFK 360

Query: 781 DGKCSCGDYW 790
           DG+CSCGDYW
Sbjct: 361 DGQCSCGDYW 370



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 102/227 (44%), Gaps = 37/227 (16%)

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           ++ ACA+      GKQVHA +++       E  + V+N LV +Y KCG+           
Sbjct: 4   ILRACASVAALEQGKQVHADIIKIGF----ELDVSVSNGLVDMYGKCGR----------- 48

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
                               I++A+ +F  + E ++ SW  MISGLAQ+G G+E + LF 
Sbjct: 49  --------------------IEDAQEVFSKLLEPDVASWNAMISGLAQHGCGKEAVLLFE 88

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARC 466
           QM   G KP    F   ++ C+  G ++ GR     +    G        + ++ ++ R 
Sbjct: 89  QMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRA 148

Query: 467 GVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGNGARAIELYEQMLK 512
           G ++ A    N MP   + S W +++ A   HGN   A    EQ+++
Sbjct: 149 GCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIELAERAVEQLIE 195



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 38/231 (16%)

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
              +L A A +   E Q  Q+H  ++K G  L  SV N L+ +Y KC           + 
Sbjct: 1   MAGILRACASVAALE-QGKQVHADIIKIGFELDVSVSNGLVDMYGKC---------GRIE 50

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A+ VF ++ E D  SW  M++G  ++     A    +                      
Sbjct: 51  DAQEVFSKLLEPDVASWNAMISGLAQHGCGKEAVLLFE---------------------- 88

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVTL 330
           +ML   ++ ++ T+  V+S C+++GL   G+     + R     P  E      + +V L
Sbjct: 89  QMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHY----SCMVDL 144

Query: 331 YWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           + + G ++EA +  NQMP E +   W ++L A    G I+ A+   E + E
Sbjct: 145 FGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIELAERAVEQLIE 195



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 33/127 (25%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + VHA +I  GF+    + N L+D+Y K  ++  A+ +F ++ +PD+ +          
Sbjct: 17  GKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDVAS---------- 66

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                                  +NAMI+  + +  G  A+ LF  M +  VKP+  TF 
Sbjct: 67  -----------------------WNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFV 103

Query: 154 SVLSALA 160
            VLS  +
Sbjct: 104 VVLSGCS 110


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 232/565 (41%), Positives = 353/565 (62%), Gaps = 28/565 (4%)

Query: 238 NDYLDAAREFLDGMSENVGVAWNALI-----SGYVHRELK----MLMLRIQLDEFTYTSV 288
           N Y+D    F          +WN++I     SG     L+    M  L ++ +  T+   
Sbjct: 33  NKYVDKTNVF----------SWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCA 82

Query: 289 ISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
           I +C+       G+Q H   L    +P     L V++ALV +Y KCG++ +AR +F+++ 
Sbjct: 83  IKSCSALLDLHSGRQAHQQALIFGFEP----DLFVSSALVDMYSKCGELRDARTLFDEIS 138

Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQ 408
            R++VSW ++++ YV       A  +F+ M ER+++SW  +I+  AQNG   E +++F +
Sbjct: 139 HRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHR 198

Query: 409 MRLEGFKPCDY---AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465
           M  +G    +Y     +  + +CA  G+   G+ +H Q++  G +S++  G ++I MY +
Sbjct: 199 MVKDG--EINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCK 256

Query: 466 CGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTV 525
           CG VE A   F+ M   +  SW+AM+A  G HG+   A+E++ +M   G+ P+ ITF++V
Sbjct: 257 CGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSV 316

Query: 526 LSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP 585
           L+AC+HAGL++EG  +F+ M   + + PG +HY   +DLL RAG   EA D+I  +  +P
Sbjct: 317 LAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRP 376

Query: 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645
              +W ALL  CR+H N+DLG  +A +LF+L P + G YVLLSN+YA+ GRW+D  R+R 
Sbjct: 377 DFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRI 436

Query: 646 LMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKF 705
           LM++ G+ K PG S +++  +VHVFLV D  HP+ + +Y+YLE+L ++++++GYVPD   
Sbjct: 437 LMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTS 496

Query: 706 VLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVG 765
           VLHD+  ++KE  L  HSEKLAVAFG+M    G T+ ++KNLR+CGDCH A KF+SK+V 
Sbjct: 497 VLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVD 556

Query: 766 REIVVRDGKRFHHFRDGKCSCGDYW 790
           REIVVRD KRFHHFRDG CSCGDYW
Sbjct: 557 REIVVRDSKRFHHFRDGLCSCGDYW 581



 Score =  146 bits (368), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 110/410 (26%), Positives = 190/410 (46%), Gaps = 60/410 (14%)

Query: 103 MFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF-TSVLSALAL 161
           +FNK   K  +   +N++I   + + +   A+  F  MR+  +KP+  TF  ++ S  AL
Sbjct: 31  LFNKYVDKT-NVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSAL 89

Query: 162 IVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMP 221
           +     +       +      LF S  +AL+ +Y KC           +  AR +FDE+ 
Sbjct: 90  LDLHSGRQAHQQALIFGFEPDLFVS--SALVDMYSKC---------GELRDARTLFDEIS 138

Query: 222 ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR-------ELKML 274
            R+ +SWT+M+TGYV+ND    A    DGM+E   ++WN++I+ Y          E+   
Sbjct: 139 HRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHR 198

Query: 275 MLR---IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
           M++   I  +  T ++V+ ACA+SG  RLGK +H  ++    K   E ++ V  +++ +Y
Sbjct: 199 MVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVI----KMGLESNVFVGTSIIDMY 254

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            KCGKV  AR  F++M E+++ SW+A                               M++
Sbjct: 255 CKCGKVEMARKAFDRMREKNVKSWSA-------------------------------MVA 283

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYD 450
           G   +G+ +E L++F +M + G KP    F   + +C+  G LE G      + H    +
Sbjct: 284 GYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVE 343

Query: 451 SSLSAGNALITMYARCGVV-EAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
             +     ++ +  R G + EA + +       D V W A++ A   H N
Sbjct: 344 PGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKN 393



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 183/397 (46%), Gaps = 49/397 (12%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R  H   +  GF+P   + + L+D+Y K  +L  ARTLFDEI   +IV+ T++I  Y  
Sbjct: 95  GRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQ 154

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPDNFTF 152
           +D+   A  +F+   +  RD + +N++I  Y+ N     ++E+F  M +D ++  +  T 
Sbjct: 155 NDDAHRALRVFD--GMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTL 212

Query: 153 TSVLSALALIVEEE-KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           ++VL A A    +   +C  +H  V+K G      V  ++I +Y KC           + 
Sbjct: 213 SAVLLACAHSGSQRLGKC--IHDQVIKMGLESNVFVGTSIIDMYCKC---------GKVE 261

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            AR+ FD M E++  SW+ M+ GY  + +   A+E L+   E                  
Sbjct: 262 MARKAFDRMREKNVKSWSAMVAGYGMHGH---AKEALEVFYE------------------ 300

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQ-VHAYLLRTEAKPTPEFSLPVNNALVTL 330
            M M  ++ +  T+ SV++AC+++GL   G     A     + +P  E        +V L
Sbjct: 301 -MNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHY----GCMVDL 355

Query: 331 YWKCGKVNEARDIFNQMPER-DLVSWNAILSAYVSAGLID----EAKSLFEAMRERNLLS 385
             + G + EA D+   M  R D V W A+L A      +D     A+ LFE +  +N   
Sbjct: 356 LGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFE-LDPKNCGY 414

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGF-KPCDYAF 421
           + ++ +  A  G  E+  ++   M+  G  KP  ++ 
Sbjct: 415 YVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSL 451



 Score = 47.8 bits (112), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 37/133 (27%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           +  L + +H  +I  G +    +   +ID+YCK  K+  AR  FD + + ++ + + ++A
Sbjct: 224 SQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVA 283

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA--AIELFRDMRRDDVKP 147
            Y                                     +GHA  A+E+F +M    VKP
Sbjct: 284 GYGM-----------------------------------HGHAKEALEVFYEMNMAGVKP 308

Query: 148 DNFTFTSVLSALA 160
           +  TF SVL+A +
Sbjct: 309 NYITFVSVLAACS 321


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 275/770 (35%), Positives = 418/770 (54%), Gaps = 92/770 (11%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLK---LVYARTLFDEIPQPDIVARTTLIAAY 91
           R +HA MI  G     + +++LI+    S     L YA ++F  I +P+++         
Sbjct: 50  RIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLL--------- 100

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                                    +N M   ++ +S+  +A++L+  M    + P+++T
Sbjct: 101 ------------------------IWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYT 136

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           F  VL + A   +  K+  Q+H  V+K G  L   V  +LIS+YV+            + 
Sbjct: 137 FPFVLKSCAK-SKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQ---------NGRLE 186

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR-- 269
            A +VFD+ P RD +S+T ++ GY    Y++ A++  D +     V+WNA+ISGY     
Sbjct: 187 DAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGN 246

Query: 270 -----EL--KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
                EL   M+   ++ DE T  +V+SACA SG   LG+QVH ++           +L 
Sbjct: 247 YKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGS----NLK 302

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
           + NAL+ LY KCG+                               ++ A  LFE +  ++
Sbjct: 303 IVNALIDLYSKCGE-------------------------------LETACGLFERLPYKD 331

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
           ++SW  +I G       +E L LF +M   G  P D      + +CA LGA++ GR +H 
Sbjct: 332 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHV 391

Query: 443 QLVH--SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
            +     G  ++ S   +LI MYA+CG +EAA+ VFN++ +    SWNAMI     HG  
Sbjct: 392 YIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRA 451

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
             + +L+ +M K GI PD ITF+ +LSAC+H+G++  GR  F TM   Y + P  +HY  
Sbjct: 452 DASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGC 511

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
            IDLL  +G F EA+++I+ +  +P   IW +LL  C++HGN++LG   AE L ++ P +
Sbjct: 512 MIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPEN 571

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEA 680
            G+YVLLSN+YA+ GRW++ A+ R L+ D+G+KK PGCS IE+D+ VH F++ D  HP  
Sbjct: 572 PGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRN 631

Query: 681 QAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT 740
           + +Y  LE++ + + K G+VPDT  VL +ME + KE AL  HSEKLA+AFGL+    G  
Sbjct: 632 REIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTK 691

Query: 741 VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           + ++KNLR+C +CH A K +SK+  REI+ RD  RFHHFRDG CSC DYW
Sbjct: 692 LTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 119/454 (26%), Positives = 184/454 (40%), Gaps = 78/454 (17%)

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE------ 370
           P +    N+  ++L   C  +   R I  QM +  L + N  LS  +   ++        
Sbjct: 26  PPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLP 85

Query: 371 -AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
            A S+F+ ++E NLL W  M  G A +      LKL+  M   G  P  Y F   + SCA
Sbjct: 86  YAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCA 145

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITM--------------------------- 462
              A + G+Q+H  ++  G D  L    +LI+M                           
Sbjct: 146 KSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTA 205

Query: 463 ----YARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
               YA  G +E A  +F+ +P  D VSWNAMI+   + GN   A+EL++ M+K  + PD
Sbjct: 206 LIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPD 265

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVI 578
             T +TV+SAC  +G ++ GR+    +   +G           IDL  + G+   A  + 
Sbjct: 266 ESTMVTVVSACAQSGSIELGRQVHLWI-DDHGFGSNLKIVNALIDLYSKCGELETACGLF 324

Query: 579 DSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT---YVLLSNMYA--- 632
           + LP+K     W  L+ G   H N+    + A  LFQ M     T     +LS + A   
Sbjct: 325 ERLPYKDVIS-WNTLIGG-YTHMNL---YKEALLLFQEMLRSGETPNDVTMLSILPACAH 379

Query: 633 ----NLGRWDDAARVRKL--------MRDRGVKKEPGCSWIEVDNKV------------H 668
               ++GRW      ++L        +R   +     C  IE  ++V            +
Sbjct: 380 LGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWN 439

Query: 669 VFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPD 702
             +     H  A A +     L   MRK+G  PD
Sbjct: 440 AMIFGFAMHGRADASF----DLFSRMRKIGIQPD 469



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 122/288 (42%), Gaps = 66/288 (22%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R VH  +   GF     I+N LID+Y K  +L  A  LF+ +P  D+++  TLI  Y+
Sbjct: 284 LGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYT 343

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
              ++ L +E                              A+ LF++M R    P++ T 
Sbjct: 344 ---HMNLYKE------------------------------ALLLFQEMLRSGETPNDVTM 370

Query: 153 TSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
            S+L A A L   +  + + ++      G    +S+  +LI +Y KC           + 
Sbjct: 371 LSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGD---------IE 421

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
           AA +VF+ +  +   SW  M+ G+  +   DA+ +                         
Sbjct: 422 AAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFS---------------------- 459

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
           +M  + IQ D+ T+  ++SAC++SG+  LG+ +   + + + K TP+ 
Sbjct: 460 RMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQ-DYKMTPKL 506


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 258/685 (37%), Positives = 382/685 (55%), Gaps = 64/685 (9%)

Query: 117 YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTV 176
           + ++I  Y+ +   H ++  F  M    + PD+  F SVL + AL+++       +H  +
Sbjct: 74  WKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLG-ESLHGYI 132

Query: 177 VKSGTGLFTSVLNALISVYVKCVSSPFV--SSRSLMGAARRVFDEMPERDELSWTTMMTG 234
           ++ G        NAL+++Y K     F+  S R  +GA   VFDEM ER      ++ T 
Sbjct: 133 IRVGLDFDLYTGNALMNMYSKL---RFLEESGRQRLGAG-EVFDEMTERTR----SVRTV 184

Query: 235 YVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLR---------IQLDEFTY 285
            V ++  D+ R+  + M E   V+WN +I+G     L    LR         ++ D FT 
Sbjct: 185 SVLSE--DSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTL 242

Query: 286 TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFN 345
           +SV+   A +     GK++H   +R       +  + V ++L+ +Y KC +V ++  +F 
Sbjct: 243 SSVLPLIAENVDISRGKEIHGCSIRQGL----DADIYVASSLIDMYAKCTRVADSCRVFT 298

Query: 346 QMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKL 405
            + ERD +SWN+I++  V  GL D                               EGL+ 
Sbjct: 299 LLTERDGISWNSIIAGCVQNGLFD-------------------------------EGLRF 327

Query: 406 FSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465
           F QM +   KP  Y+F+  + +CA L  L  G+QLH  +  +G+D ++   ++L+ MYA+
Sbjct: 328 FRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAK 387

Query: 466 CGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTV 525
           CG +  A  +F+ M   D VSW AMI     HG    AIEL+EQM  EGI         V
Sbjct: 388 CGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGI-------KAV 440

Query: 526 LSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP 585
           L+AC+H GLV E  +YF +M   +GI PG +HYA   DLL RAG+  EA D I  +   P
Sbjct: 441 LTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGP 500

Query: 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645
           +  IW  LL+ CR+H NID+  + A ++ ++ P++ G Y+LL+N+Y+   RW +AA+ R 
Sbjct: 501 TGSIWATLLSACRVHKNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRA 560

Query: 646 LMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKF 705
            MR  G++K P CSWIEV NKV+ F+  D +HP  + + + +E LV  M K GYVPDT  
Sbjct: 561 SMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSE 620

Query: 706 VLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVG 765
           V HD+E +QK+Y + +HSE+LA+ FG++  P G T+RV KNLR+C DCH A KF+SK+VG
Sbjct: 621 VHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVG 680

Query: 766 REIVVRDGKRFHHFRDGKCSCGDYW 790
           REIVVRD  RFHHF++G CSCGDYW
Sbjct: 681 REIVVRDNSRFHHFKNGTCSCGDYW 705



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 178/379 (46%), Gaps = 38/379 (10%)

Query: 256 GVAWNALISGYV-----HRELK----MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
            +AW ++I  Y      H+ L     ML   +  D   + SV+ +CA      LG+ +H 
Sbjct: 71  ALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHG 130

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE-------ARDIFNQMPERDL-VSWNAI 358
           Y++R       +F L   NAL+ +Y K   + E       A ++F++M ER   V   ++
Sbjct: 131 YIIRVGL----DFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSV 186

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
           LS        D  + +FE M E++L+SW  +I+G A+NG  EE L++  +M     KP  
Sbjct: 187 LSE-------DSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDS 239

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478
           +  +  +   A    +  G+++H   +  G D+ +   ++LI MYA+C  V  +  VF  
Sbjct: 240 FTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTL 299

Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG 538
           +   D +SWN++IA   Q+G     +  + QML   I P   +F +++ AC H   +  G
Sbjct: 300 LTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLG 359

Query: 539 RRYFETMHGPYGIPPGEDH----YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
           ++    +HG Y    G D      +  +D+  + G    AK + D +  +     W A++
Sbjct: 360 KQ----LHG-YITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVS-WTAMI 413

Query: 595 AGCRIHGNIDLGIQAAEQL 613
            GC +HG     I+  EQ+
Sbjct: 414 MGCALHGQAPDAIELFEQM 432



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 122/471 (25%), Positives = 211/471 (44%), Gaps = 64/471 (13%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCK-------SLKLVYARTLFDEIPQPDIVAR 84
           +L  S+H ++I  G     +  N L+++Y K         + + A  +FDE+ +     R
Sbjct: 123 NLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVR 182

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           T  + +    D+V   R++F   P K  D V +N +I   + N      + + R+M   +
Sbjct: 183 TVSVLS---EDSV---RKIFEMMPEK--DLVSWNTIIAGNARNGLYEETLRMIREMGGAN 234

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           +KPD+FT +SVL  +A  V+  +   ++H   ++ G      V ++LI +Y KC      
Sbjct: 235 LKPDSFTLSSVLPLIAENVDISRG-KEIHGCSIRQGLDADIYVASSLIDMYAKC------ 287

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
              + +  + RVF  + ERD +SW +++ G V+N   D    F                 
Sbjct: 288 ---TRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFR--------------- 329

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
                  +MLM +I+   ++++S++ ACA+     LGKQ+H Y+ R         ++ + 
Sbjct: 330 -------QMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDE----NIFIA 378

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
           ++LV +Y KCG +  A+ IF++M  RD+VSW A++      G   +A  LFE M    + 
Sbjct: 379 SSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGI- 437

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQM-RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
               +++  +  G  +E  K F+ M R  G  P    +A         G LE        
Sbjct: 438 --KAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICG 495

Query: 444 LVHSGYDSSLSAGNALITMYARCGV---VEAANCVFNTMPNVDSVSWNAMI 491
           + H G   S+ A     T+ + C V   ++ A  V N +  VD  +  A I
Sbjct: 496 M-HIGPTGSIWA-----TLLSACRVHKNIDMAEKVANRILEVDPNNTGAYI 540



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 110/289 (38%), Gaps = 42/289 (14%)

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
           Y    L+ ++  LF  +     L+W  +I     +G   + L  F  M   G  P    F
Sbjct: 50  YSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVF 109

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE----------- 470
              + SCA L  L  G  LH  ++  G D  L  GNAL+ MY++   +E           
Sbjct: 110 PSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGE 169

Query: 471 ---------------------AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
                                +   +F  MP  D VSWN +IA   ++G     + +  +
Sbjct: 170 VFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIRE 229

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH----YARFIDLL 565
           M    + PD  T  +VL        +  G+     +HG   I  G D      +  ID+ 
Sbjct: 230 MGGANLKPDSFTLSSVLPLIAENVDISRGKE----IHG-CSIRQGLDADIYVASSLIDMY 284

Query: 566 CRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
            +  + +++  V   L  +     W +++AGC  +G  D G++   Q+ 
Sbjct: 285 AKCTRVADSCRVFTLLTERDGIS-WNSIIAGCVQNGLFDEGLRFFRQML 332



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 5/114 (4%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           T  L + +H ++  +GF     I + L+D+Y K   +  A+ +FD +   D+V+ T +I 
Sbjct: 355 TLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIM 414

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD 143
             +       A E+F +      +T    A++TA SH      A + F  M RD
Sbjct: 415 GCALHGQAPDAIELFEQM-----ETEGIKAVLTACSHGGLVDEAWKYFNSMTRD 463


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 252/620 (40%), Positives = 359/620 (57%), Gaps = 35/620 (5%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           Q+H  ++K+ + L +  L+ + SV        F SS S    A+ +F  +   +   W T
Sbjct: 33  QLHAHLLKTNSPLSSLPLSRVASV------CAFNSSFSY---AKLIFQLLDASEVTHWNT 83

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
            +            R F +G S       +A+   Y  RE       I  D +T + V+ 
Sbjct: 84  CL------------RSFAEGDSPA-----DAISLFYRLREFD-----ISPDHYTCSFVLK 121

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           AC+     R GK VH Y+     K   + ++ + N +V LY  CG++  AR +F++MP+R
Sbjct: 122 ACSRLLDVRNGKIVHGYV----EKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQR 177

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           D+++WN +++  V  G  + A  LF  M ERN+ SWT MI G AQ G  +E + LF +M 
Sbjct: 178 DVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEME 237

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
             G  P +      + +CA +G L  GR++H     SGY+ ++   N LI MY +CG +E
Sbjct: 238 DAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLE 297

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
            A  +F+ M     VSW+AMIA L  HG    A+ L+ +M+  G+ P+ +TF+ +L AC+
Sbjct: 298 DACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACS 357

Query: 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590
           H G+V++GR+YF +M   YGI P  +HY   +DL  RAG   EA + I ++P  P+  +W
Sbjct: 358 HMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVW 417

Query: 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650
            ALL GC++H NI L  +A   L +L P + G YV+LSN+YA  GRW+D ARVRKLMRDR
Sbjct: 418 GALLGGCKVHKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDR 477

Query: 651 GVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDM 710
           GVKK PG S I V+  V+ F+  D  HP+ + +++  E+L+  M+  GYVP+T  VL DM
Sbjct: 478 GVKKTPGWSSIMVEGVVYNFVAGDDTHPQTEEIFQTWEKLLQRMKLKGYVPNTSVVLLDM 537

Query: 711 ESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVV 770
           E DQKE  L  HSEKLAV FGL+K   G  +R++KNLR+C DCH A K +S V  REIVV
Sbjct: 538 EEDQKEKFLYRHSEKLAVVFGLIKTTPGTVIRIMKNLRVCEDCHAALKIISVVSTREIVV 597

Query: 771 RDGKRFHHFRDGKCSCGDYW 790
           RD  RFH F++G CSCGDYW
Sbjct: 598 RDRNRFHCFKNGSCSCGDYW 617



 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 98/404 (24%), Positives = 171/404 (42%), Gaps = 57/404 (14%)

Query: 21  QLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPD 80
           +L D RN       + VH ++   G +    + N ++ +Y    ++  AR +FD++PQ D
Sbjct: 125 RLLDVRN------GKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRD 178

Query: 81  IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
           ++    +IA      + + A ++F + P   R+   + +MI  Y+       AI+LF +M
Sbjct: 179 VITWNIMIARLVKMGDAEGAYKLFAEMP--ERNVRSWTSMIGGYAQCGKSKEAIDLFLEM 236

Query: 141 RRDDVKPDNFTFTSVLSALA----LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
               + P+  T  +VL A A    L++       ++H    +SG      V N LI +YV
Sbjct: 237 EDAGLLPNEVTVVAVLVACADMGNLVLGR-----RIHDFSNRSGYEKNIRVCNTLIDMYV 291

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           KC           +  A R+FD M ER  +SW+ M+ G   +   + A    + M  N G
Sbjct: 292 KC---------GCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMI-NTG 341

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KP 315
           V  NA+                     T+  ++ AC++ G+   G++  A + R     P
Sbjct: 342 VKPNAV---------------------TFIGILHACSHMGMVEKGRKYFASMTRDYGIVP 380

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA---YVSAGLIDEA 371
             E        +V L+ + G + EA +    MP   + V W A+L     + +  L +EA
Sbjct: 381 RIEHY----GCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEA 436

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
                 +   N   + V+ +  A+ G  E+  ++   MR  G K
Sbjct: 437 TRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVK 480


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 273/763 (35%), Positives = 397/763 (52%), Gaps = 105/763 (13%)

Query: 99  LAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA 158
           LAR++F++ P    D   YNA+I AYS     HAAI+L+R M R  V P+ +TF  VL A
Sbjct: 52  LARQVFDRIPAP--DARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKA 109

Query: 159 LALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVF 217
            + +V+    + +  H       T LF S   ALI +Y++C            G AR VF
Sbjct: 110 CSALVDLRAGRTIHAHAAAAGLHTDLFVST--ALIDLYIRCAR---------FGPARNVF 158

Query: 218 DEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLR 277
            +MP RD ++W  M+ GY  +     A   L  M ++ G+  NA                
Sbjct: 159 AKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNA---------------- 202

Query: 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE------------------- 318
                 T  S++   A  G    G  +HAY LR   +   E                   
Sbjct: 203 -----STLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLV 257

Query: 319 ------FSLPVNN-----ALVTLYWKCGKVNEARDIFNQM-------------------- 347
                   +PV N     AL+  +  C ++ EA ++F  M                    
Sbjct: 258 YACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVC 317

Query: 348 --------------------PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWT 387
                                  DL + N++LS Y  AGLI+EA   F+ +  ++ +S+ 
Sbjct: 318 ASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYG 377

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447
            ++SG  QNG  EE   +F +M+    +P        I +C+ L AL++G+  H  ++  
Sbjct: 378 ALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIR 437

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
           G     S  N+LI MYA+CG ++ +  VF+ MP  D VSWN MIA  G HG G  A  L+
Sbjct: 438 GLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLF 497

Query: 508 EQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR 567
             M  +G  PD +TF+ +++AC+H+GLV EG+ +F+TM   YGI P  +HY   +DLL R
Sbjct: 498 LGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLAR 557

Query: 568 AGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627
            G   EA   I S+P K    +W ALL  CRIH NIDLG Q +  + +L P   G +VLL
Sbjct: 558 GGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLL 617

Query: 628 SNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYL 687
           SN+++  GR+D+AA VR + + +G KK PG SWIE++  +H F+  D +HP ++ +Y  L
Sbjct: 618 SNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHEL 677

Query: 688 EQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNL 747
           + ++++++KLGY  DT FVL D+E ++KE AL  HSEKLA+AFG++ L    T+ V KNL
Sbjct: 678 DNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNL 737

Query: 748 RICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           R+CGDCH A K+M+ V  R I+VRD  RFHHF++G+CSCG++W
Sbjct: 738 RVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 120/490 (24%), Positives = 203/490 (41%), Gaps = 113/490 (23%)

Query: 36  SVHAHMISSGFKPREH---IINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           S+HA+ + +  +  E    I   L+D+Y K  +LVYA  +F  +P  + V  + LI  + 
Sbjct: 223 SIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFV 282

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
             D +    E FN                              LF+DM  + +     + 
Sbjct: 283 LCDRMT---EAFN------------------------------LFKDMLVEGLC--FLSA 307

Query: 153 TSVLSALALIVEEEKQCM--QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           TSV SAL +        M  Q+H  + KSG     +  N+L+S+Y K           L+
Sbjct: 308 TSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKA---------GLI 358

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
             A   FDE+  +D +S+  +++G V+N           G +E   + +           
Sbjct: 359 NEATMFFDEIAVKDTISYGALLSGCVQN-----------GKAEEAFLVFK---------- 397

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH-AYLLRTEAKPTPEFSLPVNNALVT 329
            KM    ++ D  T  S+I AC++    + GK  H + ++R  A  T      + N+L+ 
Sbjct: 398 -KMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALET-----SICNSLID 451

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           +Y KCGK++ +R +F++MP RD+VSWN +++ Y   GL  EA +LF  M+          
Sbjct: 452 MYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKN--------- 502

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-G 448
                                 +GF P D  F   I +C+  G +  G+     + H  G
Sbjct: 503 ----------------------QGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYG 540

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN---GARAI 504
               +     ++ + AR G+++ A     +MP   D   W A++ A   H N   G +  
Sbjct: 541 ILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVS 600

Query: 505 ELYEQMLKEG 514
            + +++  EG
Sbjct: 601 RIIQKLGPEG 610



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 97/399 (24%), Positives = 167/399 (41%), Gaps = 57/399 (14%)

Query: 223 RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY-----VHREL----KM 273
           +D+  W   +  ++    L  AR+  D +      A+NALI  Y      H  +     M
Sbjct: 32  KDKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSM 91

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL----LRTEAKPTPEFSLPVNNALVT 329
           L  R+  +++T+  V+ AC+     R G+ +HA+     L T+        L V+ AL+ 
Sbjct: 92  LRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTD--------LFVSTALID 143

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           LY +C +   AR++F +MP RD+V+WNA+L+ Y + G+   A +    M++         
Sbjct: 144 LYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHG------- 196

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
                                  G +P        +   A  GAL  G  +HA  + +  
Sbjct: 197 -----------------------GLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACL 233

Query: 450 DSS---LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
           + +   +  G AL+ MYA+C  +  A  VF+ MP  + V+W+A+I           A  L
Sbjct: 234 EQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNL 293

Query: 507 YEQMLKEGI-LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLL 565
           ++ ML EG+      +  + L  C     +  G +    +    GI          + + 
Sbjct: 294 FKDMLVEGLCFLSATSVASALRVCASLADLHMGTQ-LHALIAKSGIHADLTASNSLLSMY 352

Query: 566 CRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
            +AG  +EA    D +  K +   + ALL+GC  +G  +
Sbjct: 353 AKAGLINEATMFFDEIAVKDTIS-YGALLSGCVQNGKAE 390


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 263/763 (34%), Positives = 407/763 (53%), Gaps = 68/763 (8%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+  R  L+  Y     ++ A ++F++ P    + + +N  I     +      +ELFR 
Sbjct: 167 DVYLRCALMNFYGRCWGLEKANQVFHEMP--NPEALLWNEAIILNLQSEKLQKGVELFRK 224

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M+   +K +  T   VL A   +        Q+H  V + G     S+ N LIS+Y    
Sbjct: 225 MQFSFLKAETATIVRVLQACGKM-GALNAAKQIHGYVFRFGLDSDVSLCNPLISMY---- 279

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL-DAAREFLDGMSENVG-- 256
                S    +  ARRVFD M  R+  SW +M++ Y    +L DA   F +  S ++   
Sbjct: 280 -----SKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPD 334

Query: 257 -VAWNALISG-YVH---RELKMLMLRIQLDEF-----TYTSVISACANSGLFRLGKQVHA 306
            V WN L+SG ++H    E+  ++ R+Q + F     + TSV+ A +  G   +GK+ H 
Sbjct: 335 IVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHG 394

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366
           Y+LR       +  + V  +L+ +Y K   +  A+ +F+ M  R++ +WN+++S Y   G
Sbjct: 395 YVLRNGF----DCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKG 450

Query: 367 LIDEAKSLFEAMRER---------------------------------------NLLSWT 387
           + ++A  L   M +                                        N++SWT
Sbjct: 451 MFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWT 510

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447
            +ISG +Q G   + LK F+QM+ EG  P   +    + +CA L  L+ G+++H   + +
Sbjct: 511 ALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRN 570

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
           G+   +    ALI MY++   ++ A+ VF  + N    SWN MI      G G  AI ++
Sbjct: 571 GFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVF 630

Query: 508 EQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR 567
            +M K G+ PD ITF  +LSAC ++GL+ EG +YF++M   Y I P  +HY   +DLL R
Sbjct: 631 NEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGR 690

Query: 568 AGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627
           AG   EA D+I ++P KP A IW ALL  CRIH N+     AA+ LF+L P+++  Y+L+
Sbjct: 691 AGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILM 750

Query: 628 SNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYL 687
            N+Y+   RW+D   +R+LM   GV+     SWI+++ +VHVF  D+  HP+A  +Y  L
Sbjct: 751 MNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFEL 810

Query: 688 EQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNL 747
            QLV EM+KLGYVPD   V  +M+  +K+  L +H+EKLA+ +GL+K+  G  +RV+KN 
Sbjct: 811 YQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNT 870

Query: 748 RICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           RIC DCH+A K++S V  RE+ +RDG RFHHFR+GKCSC D+W
Sbjct: 871 RICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 913



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 137/575 (23%), Positives = 255/575 (44%), Gaps = 84/575 (14%)

Query: 63  SLKLVYARTLFDEIPQ---PDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNA 119
           S+K+++A+ +  ++PQ   PD  A+  + +     D    A   +   P   R+ + +N+
Sbjct: 48  SVKMMHAQMI--KLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLP---RNYLKWNS 102

Query: 120 MITAYSHNSNG-HAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVK 178
            +  +  ++   H  +E+F+++    V  D+  ++  L     +++     M++H  ++K
Sbjct: 103 FVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLG-MEIHGCLIK 161

Query: 179 SGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKN 238
            G  L   +  AL++ Y +C           +  A +VF EMP  + L W   +   +++
Sbjct: 162 RGFDLDVYLRCALMNFYGRCWG---------LEKANQVFHEMPNPEALLWNEAIILNLQS 212

Query: 239 DYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLF 298
           + L    E                         KM    ++ +  T   V+ AC   G  
Sbjct: 213 EKLQKGVELFR----------------------KMQFSFLKAETATIVRVLQACGKMGAL 250

Query: 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAI 358
              KQ+H Y+ R       +  + + N L+++Y K GK+  AR +F+ M  R+  SWN++
Sbjct: 251 NAAKQIHGYVFRFGL----DSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSM 306

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNL----LSWTVMISGLAQNGYGEEGLKLFSQMRLEGF 414
           +S+Y + G +++A SLF  +   ++    ++W  ++SG   +GY EE L +  +M+ EGF
Sbjct: 307 ISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGF 366

Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
           KP   +    + + + LG L  G++ H  ++ +G+D  +  G +LI MY +   + +A  
Sbjct: 367 KPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQA 426

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
           VF+ M N +  +WN++++     G    A+ L  QM KEGI PD +T+  ++S     G 
Sbjct: 427 VFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGC 486

Query: 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
            KE       +H                                 SL   P+   W AL+
Sbjct: 487 GKEA---LAVLHQ------------------------------TKSLGLTPNVVSWTALI 513

Query: 595 AGCRIHGNIDLGIQAAEQLFQ--LMPHHAGTYVLL 627
           +G    GN    ++   Q+ Q  +MP+ A    LL
Sbjct: 514 SGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLL 548



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 107/450 (23%), Positives = 194/450 (43%), Gaps = 82/450 (18%)

Query: 20  LQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQP 79
           LQ C     + +  A+ +H ++   G      + N LI +Y K+ KL  AR +FD +   
Sbjct: 241 LQACGKMGALNA--AKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENR 298

Query: 80  DIVARTTLIAAYSASDNVKLAREMF---NKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
           +  +  ++I++Y+A   +  A  +F     + +K  D V +N +++ +  +      + +
Sbjct: 299 NTSSWNSMISSYAALGFLNDAWSLFYELESSDMK-PDIVTWNCLLSGHFLHGYKEEVLNI 357

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQM----HCTVVKSGTGLFTSVLNALI 192
            + M+ +  KP++ + TSVL A++     E   + M    H  V+++G      V  +LI
Sbjct: 358 LQRMQGEGFKPNSSSMTSVLQAIS-----ELGFLNMGKETHGYVLRNGFDCDVYVGTSLI 412

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
            +YVK  S         + +A+ VFD M  R+  +W ++++GY      + A   L+ M 
Sbjct: 413 DMYVKNHS---------LTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQM- 462

Query: 253 ENVG-----VAWNALISGY-----------VHRELKMLMLRIQLDEFT------------ 284
           E  G     V WN +ISGY           V  + K L L   +  +T            
Sbjct: 463 EKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNN 522

Query: 285 ---------------------YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
                                 T ++ ACA+  L + GK++H   +R          + V
Sbjct: 523 RDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIE----DVFV 578

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
             AL+ +Y K   +  A  +F ++  + L SWN ++  +   GL  EA S+F  M++  +
Sbjct: 579 ATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGV 638

Query: 384 ----LSWTVMISGLAQNGYGEEGLKLFSQM 409
               +++T ++S    +G   EG K F  M
Sbjct: 639 GPDAITFTALLSACKNSGLIGEGWKYFDSM 668



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 155/370 (41%), Gaps = 77/370 (20%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           ++ +  H +++ +GF    ++   LID+Y K+  L  A+ +FD +   +I A  +L++ Y
Sbjct: 387 NMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGY 446

Query: 92  S----ASDNVKLAREMFNKTPLKMRDTVFYNAMITAY----------------------- 124
           S      D ++L  +M  K  +K  D V +N MI+ Y                       
Sbjct: 447 SFKGMFEDALRLLNQM-EKEGIK-PDLVTWNGMISGYAMWGCGKEALAVLHQTKSLGLTP 504

Query: 125 ------------SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQM 172
                       S   N   +++ F  M+++ V P++ + T +L A A +   +K   ++
Sbjct: 505 NVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKG-KEI 563

Query: 173 HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMM 232
           HC  +++G      V  ALI +Y K  S         +  A +VF  +  +   SW  M+
Sbjct: 564 HCLSIRNGFIEDVFVATALIDMYSKSSS---------LKNAHKVFRRIQNKTLASWNCMI 614

Query: 233 TGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISAC 292
            G+        A    + M + VGV                       D  T+T+++SAC
Sbjct: 615 MGFAIFGLGKEAISVFNEM-QKVGVG---------------------PDAITFTALLSAC 652

Query: 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER-D 351
            NSGL   G +    ++ T+ +  P   L     +V L  + G ++EA D+ + MP + D
Sbjct: 653 KNSGLIGEGWKYFDSMI-TDYRIVPR--LEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPD 709

Query: 352 LVSWNAILSA 361
              W A+L +
Sbjct: 710 ATIWGALLGS 719


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 264/707 (37%), Positives = 386/707 (54%), Gaps = 75/707 (10%)

Query: 86  TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
           +LI+ YS    ++ AR++F+K  +++RD V +N+MI  Y  N       E+F  M+   V
Sbjct: 234 SLISLYSRLGMLRDARDVFDK--MEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGV 291

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVS 205
           KP + TF SV+ + A +  E      M C  +KSG      V+ AL+    KC       
Sbjct: 292 KPTHMTFASVIKSCASL-RELALVKLMQCKALKSGFTTDQIVITALMVALSKCKE----- 345

Query: 206 SRSLMGAARRVFDEMPE-RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
               M  A  +F  M E ++ +SWT M++G ++N   D A      M             
Sbjct: 346 ----MDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQM------------- 388

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
               RE       ++ + FTY+++++   +  +F    ++HA +++T      E S  V 
Sbjct: 389 ---RRE------GVKPNHFTYSAILT--VHYPVFV--SEMHAEVIKTNY----ERSSSVG 431

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
            AL+  Y K G   +A  +F  +  +DL++W+A+L+ Y   G  +EA             
Sbjct: 432 TALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAA------------ 479

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG-LGALENGRQLHAQ 443
                              KLF Q+  EG KP ++ F+  I +CA    A E G+Q HA 
Sbjct: 480 -------------------KLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAY 520

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
            +    +++L   +AL+TMYA+ G +++A+ VF      D VSWN+MI+   QHG   +A
Sbjct: 521 AIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKA 580

Query: 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563
           +E++++M K  +  D +TF+ V++AC HAGLV++G++YF +M   + I P   HY+  ID
Sbjct: 581 LEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMID 640

Query: 564 LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623
           L  RAG   +A  +I+ +PF P A +W  LL   R+H N++LG  AAE+L  L P  +  
Sbjct: 641 LYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAA 700

Query: 624 YVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAV 683
           YVLLSNMYA  G W +   VRKLM  R VKKEPG SWIEV NK + FL  D  HP +  +
Sbjct: 701 YVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQI 760

Query: 684 YKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRV 743
           Y  L +L + ++  GY PDTK V HD+E +QKE  LS HSE+LA+AFGL+  P    +++
Sbjct: 761 YSKLSELSIRLKDAGYQPDTKNVFHDIEDEQKETILSHHSERLAIAFGLIATPPEIPIQI 820

Query: 744 LKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +KNLR+CGDCHN  K +S V  R IVVRD  RFHHF+DG CSCGDYW
Sbjct: 821 VKNLRVCGDCHNFTKLVSLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 122/431 (28%), Positives = 210/431 (48%), Gaps = 70/431 (16%)

Query: 99  LAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA 158
           +A  +F+K P +      +N ++ +YS +     A+ LF  +    ++PD  T + V + 
Sbjct: 43  IAHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNI 102

Query: 159 LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFD 218
            A  ++  K   Q+HC  VK G     SV  +L+ +Y+K  +         +   RRVFD
Sbjct: 103 CAGSLDG-KLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTEN---------VNDGRRVFD 152

Query: 219 EMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL-KMLMLR 277
           EM ER+ +SWT+++ GY                      +WN L  GYV     +M    
Sbjct: 153 EMGERNVVSWTSLLAGY----------------------SWNGLY-GYVWELFCQMQYEG 189

Query: 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
           +  + +T ++VI+A  N G+  +G QVHA ++    K   E ++PV N+L++LY + G +
Sbjct: 190 VLPNRYTVSTVIAALVNEGVVGIGLQVHAMVV----KHGFEEAIPVFNSLISLYSRLGML 245

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNG 397
            +ARD+F++M  RD V+WN++++ YV                               +NG
Sbjct: 246 RDARDVFDKMEIRDWVTWNSMIAGYV-------------------------------RNG 274

Query: 398 YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN 457
              E  ++F++M+L G KP    FA  I SCA L  L   + +  + + SG+ +      
Sbjct: 275 QDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVIT 334

Query: 458 ALITMYARCGVVEAANCVFNTMPN-VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
           AL+   ++C  ++ A  +F+ M    + VSW AMI+   Q+G   +A+ L+ QM +EG+ 
Sbjct: 335 ALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVK 394

Query: 517 PDRITFLTVLS 527
           P+  T+  +L+
Sbjct: 395 PNHFTYSAILT 405



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 166/370 (44%), Gaps = 52/370 (14%)

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL----PVNNA 326
           + +L   +Q DE T + V + CA S   +LG+QVH   ++        F L     V  +
Sbjct: 82  VSLLHSSLQPDESTLSCVFNICAGSLDGKLGRQVHCQCVK--------FGLVDHVSVGTS 133

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           LV +Y K   VN+ R +F++M ER++VSW ++L+ Y   GL                   
Sbjct: 134 LVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLY------------------ 175

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
                     GY  E   LF QM+ EG  P  Y  +  I +    G +  G Q+HA +V 
Sbjct: 176 ----------GYVWE---LFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVK 222

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
            G++ ++   N+LI++Y+R G++  A  VF+ M   D V+WN+MIA   ++G      E+
Sbjct: 223 HGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEI 282

Query: 507 YEQMLKEGILPDRITFLTVLSAC---NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563
           + +M   G+ P  +TF +V+ +C       LVK      +      G    +      + 
Sbjct: 283 FNKMQLAGVKPTHMTFASVIKSCASLRELALVK----LMQCKALKSGFTTDQIVITALMV 338

Query: 564 LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ--LMPHHA 621
            L +  +  +A  +   +    +   W A+++GC  +G  D  +    Q+ +  + P+H 
Sbjct: 339 ALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHF 398

Query: 622 GTYVLLSNMY 631
               +L+  Y
Sbjct: 399 TYSAILTVHY 408



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 120/265 (45%), Gaps = 38/265 (14%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           T L+ AY    N   A ++F    ++ +D + ++AM+  Y+       A +LF  + ++ 
Sbjct: 432 TALLDAYVKLGNTIDAVKVFE--IIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEG 489

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           +KP+ FTF+SV++A A      +Q  Q H   +K        V +AL+++Y K       
Sbjct: 490 IKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAK------- 542

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
             R  + +A  VF    ERD +SW +M++GY ++     A E  D M +           
Sbjct: 543 --RGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKR---------- 590

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT-EAKPTPEFSLPV 323
                        + +D  T+  VI+AC ++GL   G++    ++      PT    +  
Sbjct: 591 ------------NMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPT----MKH 634

Query: 324 NNALVTLYWKCGKVNEARDIFNQMP 348
            + ++ LY + G + +A  I N+MP
Sbjct: 635 YSCMIDLYSRAGMLEKAMGIINEMP 659



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 111/245 (45%), Gaps = 7/245 (2%)

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
            +S   +   +++  L D+       ++E N L ++      +++   +E L LF  +  
Sbjct: 32  FISNTVLCVPHIAHNLFDKIPHRPTTLKEHNQLLFS-----YSRDKQTKEALNLFVSLLH 86

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
              +P +   +     CAG    + GRQ+H Q V  G    +S G +L+ MY +   V  
Sbjct: 87  SSLQPDESTLSCVFNICAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVND 146

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
              VF+ M   + VSW +++A    +G      EL+ QM  EG+LP+R T  TV++A  +
Sbjct: 147 GRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVN 206

Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
            G+V  G +    M   +G       +   I L  R G   +A+DV D +  +     W 
Sbjct: 207 EGVVGIGLQ-VHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVT-WN 264

Query: 592 ALLAG 596
           +++AG
Sbjct: 265 SMIAG 269


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 278/789 (35%), Positives = 413/789 (52%), Gaps = 77/789 (9%)

Query: 27  NPITSSLARSVHAHMISSGF-----KPREHIINRLID-IYCKSLKLVYARTLFDEIPQPD 80
            P T   A  +HA + +SG          H++N L++ +    L L YA  LFD +P   
Sbjct: 8   TPRTVRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRMPPST 67

Query: 81  IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
            +  T L A   A                                  S+ H    LFR M
Sbjct: 68  FLFDTALRACSRA---------------------------------GSDPHRPFLLFRRM 94

Query: 141 RRDDVKPDNFTFTSVLSALALIVEEEKQ--CMQMHCTVVKS---GTGLFTSVLNALISVY 195
           RR  V+PD FTF  +    +          C  +H   +++       F S  N+LI +Y
Sbjct: 95  RRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVS--NSLIHMY 152

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
           ++           L   ARR FDE+  +D ++WT +++G  K   L   +  L       
Sbjct: 153 IRL---------GLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRD 203

Query: 256 GVAWNALISGYVH----REL-----KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
            ++W +LI+ Y      RE       ML   I  DE T  +V+SACA      LG+ +H 
Sbjct: 204 VISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLH- 262

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM-----PERDLVSWNAILSA 361
            L+  +  PT E +L V  AL+ +Y KCG    A+ +F+ +     P+    SWNAI+  
Sbjct: 263 LLVEEKGMPTSE-NLVV--ALIDMYAKCGDFGHAQQVFDALGRGPRPQ----SWNAIIDG 315

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
           Y   G +D A+SLF+ M  R+++++  M++G   +G   E L LF  MR    +  ++  
Sbjct: 316 YCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTV 375

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
              +T+CA LGAL+ GR LHA +     ++ +  G AL+ MY +CG V+ A  VF  M  
Sbjct: 376 VNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGK 435

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY 541
            D  +W AMIA L  +G G  A+E + QM  +G  P+ ++++ VL+AC+H+ L+ EGR Y
Sbjct: 436 RDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLY 495

Query: 542 FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
           F+ M   Y I P  +HY   IDLL R+G   EA D++ ++P +P+A IW ++L+ CR+H 
Sbjct: 496 FDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHK 555

Query: 602 NIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWI 661
           +IDL   AAE L +L P   G YV L N+Y +  +W++A+++R LM +R VKK  G S I
Sbjct: 556 HIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSI 615

Query: 662 EVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALST 721
            V  +VH F+V D +HP    +   LE++   ++ LGY P T  +  D++ ++KE AL  
Sbjct: 616 TVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQITVDVDEEEKEQALLA 675

Query: 722 HSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRD 781
           HSEKLA+AFGL+ L     V + KNLR+C DCH+A K +S++  REI+VRD  RFHHFR+
Sbjct: 676 HSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNREIIVRDRSRFHHFRE 735

Query: 782 GKCSCGDYW 790
           G CSC D+W
Sbjct: 736 GTCSCNDFW 744


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 239/602 (39%), Positives = 356/602 (59%), Gaps = 67/602 (11%)

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           N+LI +Y KC S         +  A +VFD+M ++D +SWT+++ GY +ND    A   L
Sbjct: 90  NSLIHLYCKCGS---------VVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLL 140

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
            GM                      L  R + + FT+ S++ A        +G Q+HA  
Sbjct: 141 PGM----------------------LKGRFKPNGFTFASLLKAAGAYADSGIGGQIHALA 178

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
           ++ +        + V +AL+ +Y +CGK                               +
Sbjct: 179 VKCDWHE----DVYVGSALLDMYARCGK-------------------------------M 203

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
           D A ++F+ +  +N +SW  +ISG A+ G GE  L +F++M+  GF+   + ++   +  
Sbjct: 204 DMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGL 263

Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
           AG+GALE G+ +HA +V S    +   GN ++ MYA+ G +  A  VF  + N D V+WN
Sbjct: 264 AGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWN 323

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP 548
           +M+ A  Q+G G  A+  +E+M K GI  ++ITFL +L+AC+H GLVKEG+ YF+ M   
Sbjct: 324 SMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFD-MIKE 382

Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
           Y + P  +HY   +DLL RAG  + A   I  +P +P+A +W ALLA CR+H N  +G  
Sbjct: 383 YNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQF 442

Query: 609 AAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVH 668
           AA+ +FQL P  +G  VLL N+YA+ G WD AARVRK+M+  GVKKEP CSW+E+ N VH
Sbjct: 443 AADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIGNSVH 502

Query: 669 VFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAV 728
           +F+ +D  HP A+ +YK  +++ +++RK GYVPD  +VL  ++  ++E  L  HSEK+A+
Sbjct: 503 MFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDYVLLHVDEQEREANLQYHSEKIAL 562

Query: 729 AFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788
           AF L+++P GAT+R++KN+RICGDCH+AFK++SKV  REIVVRD  RFHHF +G CSCGD
Sbjct: 563 AFALIQMPAGATIRIMKNIRICGDCHSAFKYISKVFEREIVVRDTNRFHHFSNGSCSCGD 622

Query: 789 YW 790
           YW
Sbjct: 623 YW 624



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 168/387 (43%), Gaps = 73/387 (18%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           AR +H H+ SS F+    + N LI +YCK   +V A  +FD+                  
Sbjct: 70  ARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDK------------------ 111

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                          ++ +D V + ++I  Y+ N     AI L   M +   KP+ FTF 
Sbjct: 112 ---------------MRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFA 156

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           S+L A A    +     Q+H   VK        V +AL+ +Y +C           M  A
Sbjct: 157 SLLKA-AGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARC---------GKMDMA 206

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
             VFD++  ++ +SW  +++G+ +    + A      M  N                   
Sbjct: 207 TAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRN------------------- 247

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
                +   FTY+S+ S  A  G    GK VHA+++++  K T      V N ++ +Y K
Sbjct: 248 ---GFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTA----FVGNTMLDMYAK 300

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER----NLLSWTVM 389
            G + +AR +F ++  +DLV+WN++L+A+   GL  EA S FE MR+     N +++  +
Sbjct: 301 SGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCI 360

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKP 416
           ++  +  G  +EG   F  ++    +P
Sbjct: 361 LTACSHGGLVKEGKHYFDMIKEYNLEP 387



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 121/237 (51%), Gaps = 8/237 (3%)

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP----ERDLVSWNAILSAY 362
           +L   E  PTP     V +A +T   +   +++AR I   +     E D    N+++  Y
Sbjct: 41  HLDSGELAPTPR----VYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLY 96

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
              G + EA  +F+ MR+++++SWT +I+G AQN    E + L   M    FKP  + FA
Sbjct: 97  CKCGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFA 156

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
             + +         G Q+HA  V   +   +  G+AL+ MYARCG ++ A  VF+ + + 
Sbjct: 157 SLLKAAGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSK 216

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
           + VSWNA+I+   + G+G  A+ ++ +M + G      T+ ++ S     G +++G+
Sbjct: 217 NGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGK 273



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 134/285 (47%), Gaps = 39/285 (13%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
             D+   + L+  Y+    + +A  +F+K  L  ++ V +NA+I+ ++   +G  A+ +F
Sbjct: 184 HEDVYVGSALLDMYARCGKMDMATAVFDK--LDSKNGVSWNALISGFARKGDGETALMVF 241

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
            +M+R+  +  +FT++S+ S LA I   E Q   +H  +VKS   L   V N ++ +Y K
Sbjct: 242 AEMQRNGFEATHFTYSSIFSGLAGIGALE-QGKWVHAHMVKSRQKLTAFVGNTMLDMYAK 300

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
             S         M  AR+VF+ +  +D ++W +M+T + +      A    + M +    
Sbjct: 301 SGS---------MIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRK---- 347

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                 SG            I L++ T+  +++AC++ GL + GK  H + +  E    P
Sbjct: 348 ------SG------------IYLNQITFLCILTACSHGGLVKEGK--HYFDMIKEYNLEP 387

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
           E    V   +V L  + G +N A     +MP E     W A+L+A
Sbjct: 388 EIEHYVT--VVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAA 430


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 264/757 (34%), Positives = 398/757 (52%), Gaps = 103/757 (13%)

Query: 37  VHAHMISSGF--KPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           VHA  +  GF   P   + N L+  YC+  +L  A  LF+EIP+                
Sbjct: 169 VHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPE---------------- 212

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
                            +D+V +N +IT Y  +     +I LF  MR+   +P +FTF+ 
Sbjct: 213 -----------------KDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSG 255

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           VL A+ + + +     Q+H   V +G     SV N ++  Y K         R L    R
Sbjct: 256 VLKAV-VGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSK-------HDRVL--ETR 305

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
            +FDEMPE D +S+  +++ Y + D  +A+  F   M             G+  R     
Sbjct: 306 MLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQ----------CMGFDRRN---- 351

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
                   F + +++S  AN    ++G+Q+H   L   A       L V N+LV +Y KC
Sbjct: 352 --------FPFATMLSIAANLSSLQMGRQLHCQALLATADSI----LHVGNSLVDMYAKC 399

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
                                           + +EA+ +F+++ +R  +SWT +ISG  
Sbjct: 400 E-------------------------------MFEEAELIFKSLPQRTTVSWTALISGYV 428

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
           Q G    GLKLF++MR    +     FA  + + A   +L  G+QLHA ++ SG   ++ 
Sbjct: 429 QKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVF 488

Query: 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
           +G+ L+ MYA+CG ++ A  VF  MP+ ++VSWNA+I+A   +G+G  AI  + +M++ G
Sbjct: 489 SGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESG 548

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
           + PD ++ L VL+AC+H G V++G  YF+ M   YGI P + HYA  +DLL R G+F+EA
Sbjct: 549 LQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEA 608

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP-HHAGTYVLLSNMYAN 633
           + ++D +PF+P   +W ++L  CRIH N  L  +AAE+LF +     A  YV +SN+YA 
Sbjct: 609 EKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAA 668

Query: 634 LGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLE 693
            G W+    V+K MR+RG+KK P  SW+EV++K+HVF  +D  HP    + + + +L  E
Sbjct: 669 AGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAE 728

Query: 694 MRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDC 753
           + + GY PDT  V+ D++   K  +L  HSE+LAVAF L+  P G  + V+KNLR C DC
Sbjct: 729 IEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDC 788

Query: 754 HNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           H A K +SK+V REI VRD  RFHHF +G CSCGDYW
Sbjct: 789 HAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825



 Score =  209 bits (531), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 169/628 (26%), Positives = 288/628 (45%), Gaps = 104/628 (16%)

Query: 5   NADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSL 64
           N++ +R+     A+  QL  P +P T    R V A +I +GF       N +++   +  
Sbjct: 6   NSNEVRS--RTLATLRQLRQP-SPATFLDTRRVDARIIKTGFDTDTCRSNFIVEDLLRRG 62

Query: 65  KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
           ++  AR ++DE+P  + V+  T+I+ +  + +V  AR++F+  P   R  V +  ++  Y
Sbjct: 63  QVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMP--DRTVVTWTILMGWY 120

Query: 125 SHNSNGHAAIELFRDMRRDD--VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSG-- 180
           + NS+   A +LFR M R      PD+ TFT++L      V  +    Q+H   VK G  
Sbjct: 121 ARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAV-PQNAVGQVHAFAVKLGFD 179

Query: 181 TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY 240
           T  F +V N L+  Y +            +  A  +F+E+PE+D +++ T++TGY K   
Sbjct: 180 TNPFLTVSNVLLKSYCEV---------RRLDLACVLFEEIPEKDSVTFNTLITGYEK--- 227

Query: 241 LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRL 300
                              + L +  +H  LKM     Q  +FT++ V+ A      F L
Sbjct: 228 -------------------DGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFAL 268

Query: 301 GKQVHAYLLRTEAKPTPEFS--LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAI 358
           G+Q+HA  +      T  FS    V N ++  Y K  +V E R +F++MPE D VS+N +
Sbjct: 269 GQQLHALSV------TTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVV 322

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
           +S+Y                               +Q    E  L  F +M+  GF   +
Sbjct: 323 ISSY-------------------------------SQADQYEASLHFFREMQCMGFDRRN 351

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478
           + FA  ++  A L +L+ GRQLH Q + +  DS L  GN+L+ MYA+C + E A  +F +
Sbjct: 352 FPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKS 411

Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN-------- 530
           +P   +VSW A+I+   Q G     ++L+ +M    +  D+ TF TVL A          
Sbjct: 412 LPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLG 471

Query: 531 ---HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSA 587
              HA +++ G    E +    G+          +D+  + G   +A  V + +P + +A
Sbjct: 472 KQLHAFIIRSGN--LENVFSGSGL----------VDMYAKCGSIKDAVQVFEEMPDR-NA 518

Query: 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
             W AL++    +G+ +  I A  ++ +
Sbjct: 519 VSWNALISAHADNGDGEAAIGAFAKMIE 546


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 247/681 (36%), Positives = 374/681 (54%), Gaps = 64/681 (9%)

Query: 117 YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTV 176
           ++++I  Y+ +S  H +   F  MR   V P+   F S+L A  L+ +  K    +H   
Sbjct: 78  WSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLL-KHHKLAHSLHACT 136

Query: 177 VKSGTGLFTSVLNALISVYVKCVSSPFV------SSRSLMGAARRVFDEMPERDELSWTT 230
           V+ G      + NALI+ Y K  ++  V         S +   ++VFD MP RD +SW T
Sbjct: 137 VRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNT 196

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++ G+ +N     A + +  M +N                      +++ D FT +S++ 
Sbjct: 197 VIAGFAQNGMYVEALDMVREMGKNG---------------------KLKPDSFTLSSILP 235

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
             A       GK++H Y +R       +  + + ++L+ +Y KC ++  +   F  +P +
Sbjct: 236 IFAEHVDVNKGKEIHGYAVRNGF----DGDVFIGSSLIDMYAKCNRLECSLRAFYILPRK 291

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           D +SWN+I                               I+G  QNG  + GL  F +M 
Sbjct: 292 DAISWNSI-------------------------------IAGCVQNGEFDRGLGFFRRML 320

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
            E  KP   +F+  I +CA L AL  GRQLH  +V  G+D +    ++L+ MYA+CG ++
Sbjct: 321 KENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIK 380

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
            A  VF+ +   D V+W A+I     HG+   A+ L+E ML++G+ P  + F+ VL+AC+
Sbjct: 381 MARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACS 440

Query: 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSAPI 589
           HAGLV EG RYF +M   +GI PG +HYA   DLL RAG+  EA D I ++   +P+  +
Sbjct: 441 HAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSV 500

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
           W  LLA CR H +++L  +  ++L  +   + G YVL+SN+Y+   RW DAAR+R  MR 
Sbjct: 501 WSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRIHMRK 560

Query: 650 RGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHD 709
           +G+KK P CSWIEV N+VH F+  D +HP    + K L+ L+ +M K GYV DT  VLHD
Sbjct: 561 KGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQMEKEGYVIDTNQVLHD 620

Query: 710 MESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIV 769
           ++ + K   L  HSE+LA+A+G++    G T+RV+KN+R+C DCH A KF++K+VGREI 
Sbjct: 621 VDEELKRELLHNHSERLAIAYGIISTTAGTTIRVIKNIRVCADCHTAIKFITKIVGREIT 680

Query: 770 VRDGKRFHHFRDGKCSCGDYW 790
           VRD  RFHHF++G CSCGDYW
Sbjct: 681 VRDNSRFHHFKNGSCSCGDYW 701



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 120/485 (24%), Positives = 214/485 (44%), Gaps = 93/485 (19%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           LA S+HA  +  G     +I N LI+ Y    K   A  +FD  P+              
Sbjct: 128 LAHSLHACTVRLGLDSDLYIANALINTYA---KFHNAGKVFDVFPK-------------R 171

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPDNFT 151
               +   +++F+  P+  RD V +N +I  ++ N     A+++ R+M ++  +KPD+FT
Sbjct: 172 GESGIDCVKKVFDMMPV--RDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFT 229

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
            +S+L   A  V+  K   ++H   V++G      + ++LI +Y KC         + + 
Sbjct: 230 LSSILPIFAEHVDVNKG-KEIHGYAVRNGFDGDVFIGSSLIDMYAKC---------NRLE 279

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            + R F  +P +D +SW +++ G V+N   D    F                        
Sbjct: 280 CSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFR---------------------- 317

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
           +ML   ++    +++SVI ACA+     LG+Q+H  ++R       EF   + ++LV +Y
Sbjct: 318 RMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDN-EF---IASSLVDMY 373

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            KCG +  AR +F+++ +RD+V+W AI                               I 
Sbjct: 374 AKCGNIKMARYVFDRIDKRDMVAWTAI-------------------------------IM 402

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG-RQLHAQLVHSGYD 450
           G A +G+  + + LF  M  +G +PC  AF   +T+C+  G ++ G R  ++     G  
Sbjct: 403 GCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIA 462

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS--WNAMIAALGQHGNGARAIELYE 508
             L    A+  +  R G +E A    + M  V      W+ ++AA   H    +++EL E
Sbjct: 463 PGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSILLAACRAH----KSVELAE 518

Query: 509 QMLKE 513
           ++L +
Sbjct: 519 KVLDK 523



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 165/386 (42%), Gaps = 68/386 (17%)

Query: 258 AWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
           AW+++I  Y    L          M  L +  +   + S++ A       +L   +HA  
Sbjct: 77  AWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACT 136

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWK---CGKVNEA------------RDIFNQMPERDLV 353
           +R       +  L + NAL+  Y K    GKV +             + +F+ MP RD+V
Sbjct: 137 VRLGL----DSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVV 192

Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
           SWN +                               I+G AQNG   E L +  +M   G
Sbjct: 193 SWNTV-------------------------------IAGFAQNGMYVEALDMVREMGKNG 221

Query: 414 -FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
             KP  +  +  +   A    +  G+++H   V +G+D  +  G++LI MYA+C  +E +
Sbjct: 222 KLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECS 281

Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
              F  +P  D++SWN++IA   Q+G   R +  + +MLKE + P  ++F +V+ AC H 
Sbjct: 282 LRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHL 341

Query: 533 GLVKEGRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
             +  GR+    +HG     G    E   +  +D+  + G    A+ V D +  K     
Sbjct: 342 TALSLGRQ----LHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRID-KRDMVA 396

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQ 615
           W A++ GC +HG+    +   E + +
Sbjct: 397 WTAIIMGCAMHGHALDAVSLFENMLE 422



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 39/152 (25%)

Query: 9   IRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVY 68
           ++ +A  ++S +  C     +  SL R +H  ++  GF   E I + L+D+Y K   +  
Sbjct: 324 VKPMAVSFSSVIPACAHLTAL--SLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKM 381

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           AR +FD I + D+VA T +I   +                                    
Sbjct: 382 ARYVFDRIDKRDMVAWTAIIMGCAM----------------------------------- 406

Query: 129 NGHA--AIELFRDMRRDDVKPDNFTFTSVLSA 158
           +GHA  A+ LF +M  D V+P    F +VL+A
Sbjct: 407 HGHALDAVSLFENMLEDGVRPCYVAFMAVLTA 438


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 273/766 (35%), Positives = 398/766 (51%), Gaps = 105/766 (13%)

Query: 96  NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV 155
            + LAR++F++ P    D   YNA+I AYS     HAAI+L+R M R  V P+ +TF  V
Sbjct: 49  QLALARQVFDRIPAP--DARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFV 106

Query: 156 LSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           L A + +V+    + +  H       T LF S   ALI +Y++C            G AR
Sbjct: 107 LKACSALVDLRAGRTIHAHAAAAGLHTDLFVST--ALIDLYIRCAR---------FGPAR 155

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
            VF +MP RD ++W  M+ GY  +     A   L  M ++ G+  NA             
Sbjct: 156 NVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNA------------- 202

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE---------------- 318
                    T  S++   A  G    G  +HAY LR   +   E                
Sbjct: 203 --------STLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCK 254

Query: 319 ---------FSLPVNN-----ALVTLYWKCGKVNEARDIFNQM----------------- 347
                      +PV N     AL+  +  C ++ EA ++F  M                 
Sbjct: 255 QLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASAL 314

Query: 348 -----------------------PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
                                     DL + N++LS Y  AGLI+EA   F+ +  ++ +
Sbjct: 315 RVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTI 374

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
           S+  ++SG  QNG  EE   +F +M+    +P        I +C+ L AL++G+  H  +
Sbjct: 375 SYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSV 434

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
           +  G     S  N+LI MYA+CG ++ +  VF+ MP  D VSWN MIA  G HG G  A 
Sbjct: 435 IIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEAT 494

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
            L+  M  +G  PD +TF+ +++AC+H+GLV EG+ +F+TM   YGI P  +HY   +DL
Sbjct: 495 TLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDL 554

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624
           L R G   EA   I S+P K    +W ALL  CRIH NIDLG Q +  + +L P   G +
Sbjct: 555 LARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNF 614

Query: 625 VLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVY 684
           VLLSN+++  GR+D+AA VR + + +G KK PG SWIE++  +H F+  D +HP ++ +Y
Sbjct: 615 VLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIY 674

Query: 685 KYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVL 744
             L+ ++++++KLGY  DT FVL D+E ++KE AL  HSEKLA+AFG++ L    T+ V 
Sbjct: 675 HELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVT 734

Query: 745 KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KNLR+CGDCH A K+M+ V  R I+VRD  RFHHF++G+CSCG++W
Sbjct: 735 KNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 120/490 (24%), Positives = 203/490 (41%), Gaps = 113/490 (23%)

Query: 36  SVHAHMISSGFKPREH---IINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           S+HA+ + +  +  E    I   L+D+Y K  +LVYA  +F  +P  + V  + LI  + 
Sbjct: 223 SIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFV 282

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
             D +    E FN                              LF+DM  + +     + 
Sbjct: 283 LCDRMT---EAFN------------------------------LFKDMLVEGLC--FLSA 307

Query: 153 TSVLSALALIVEEEKQCM--QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           TSV SAL +        M  Q+H  + KSG     +  N+L+S+Y K           L+
Sbjct: 308 TSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKA---------GLI 358

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
             A   FDE+  +D +S+  +++G V+N           G +E   + +           
Sbjct: 359 NEATMFFDEIAVKDTISYGALLSGCVQN-----------GKAEEAFLVFK---------- 397

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH-AYLLRTEAKPTPEFSLPVNNALVT 329
            KM    ++ D  T  S+I AC++    + GK  H + ++R  A  T      + N+L+ 
Sbjct: 398 -KMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALET-----SICNSLID 451

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           +Y KCGK++ +R +F++MP RD+VSWN +++ Y   GL  EA +LF  M+          
Sbjct: 452 MYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKN--------- 502

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-G 448
                                 +GF P D  F   I +C+  G +  G+     + H  G
Sbjct: 503 ----------------------QGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYG 540

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN---GARAI 504
               +     ++ + AR G+++ A     +MP   D   W A++ A   H N   G +  
Sbjct: 541 ILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVS 600

Query: 505 ELYEQMLKEG 514
            + +++  EG
Sbjct: 601 RIIQKLGPEG 610



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 95/395 (24%), Positives = 164/395 (41%), Gaps = 49/395 (12%)

Query: 223 RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY-----VHREL----KM 273
           +D+  W   +  ++    L  AR+  D +      A+NALI  Y      H  +     M
Sbjct: 32  KDKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSM 91

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
           L  R+  +++T+  V+ AC+     R G+ +HA+             L V+ AL+ LY +
Sbjct: 92  LRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHT----DLFVSTALIDLYIR 147

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
           C +   AR++F +MP RD+V+WNA+L+ Y + G+   A +    M++             
Sbjct: 148 CARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHG----------- 196

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS- 452
                              G +P        +   A  GAL  G  +HA  + +  + + 
Sbjct: 197 -------------------GLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNE 237

Query: 453 --LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
             +  G AL+ MYA+C  +  A  VF+ MP  + V+W+A+I           A  L++ M
Sbjct: 238 EQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDM 297

Query: 511 LKEGI-LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
           L EG+      +  + L  C     +  G +    +    GI          + +  +AG
Sbjct: 298 LVEGLCFLSATSVASALRVCASLADLHMGTQ-LHALIAKSGIHADLTASNSLLSMYAKAG 356

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
             +EA    D +  K +   + ALL+GC  +G  +
Sbjct: 357 LINEATMFFDEIAVKDTIS-YGALLSGCVQNGKAE 390



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 156/346 (45%), Gaps = 53/346 (15%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+ A  +L++ Y+ +  +  A   F++  +K  DT+ Y A+++    N     A  +F+ 
Sbjct: 341 DLTASNSLLSMYAKAGLINEATMFFDEIAVK--DTISYGALLSGCVQNGKAEEAFLVFKK 398

Query: 140 MRRDDVKPDNFTFTSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
           M+  +++PD  T  S++ A + L   +  +C   H +V+  G  L TS+ N+LI +Y KC
Sbjct: 399 MQACNMEPDIATMVSLIPACSHLAALQHGKCS--HGSVIIRGLALETSICNSLIDMYAKC 456

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
                      +  +R+VFD+MP RD +SW TM+ GY  +     A     GM +N G A
Sbjct: 457 ---------GKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGM-KNQGFA 506

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ-----VHAYLLRTEA 313
                                 D+ T+  +I+AC++SGL   GK       H Y +    
Sbjct: 507 ---------------------PDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGIL--- 542

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAK 372
            P  E  +     +V L  + G ++EA      MP + D+  W A+L A      ID  K
Sbjct: 543 -PRMEHYI----CMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGK 597

Query: 373 S---LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
               + + +      ++ ++ +  +  G  +E  ++    +++GFK
Sbjct: 598 QVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFK 643


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 252/705 (35%), Positives = 397/705 (56%), Gaps = 38/705 (5%)

Query: 118 NAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALAL-IVEEEKQCMQMHCTV 176
           N M+  Y   ++   AI +++ M   +V  DN+T+  +  + ++ + E + +C+Q H  V
Sbjct: 95  NTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDH--V 152

Query: 177 VKSGTGLFTSVLNALISVYVKCVSSP-------------FVSSRSLMGA---------AR 214
           +K G      + N LI++Y  C +                VS  S++           A+
Sbjct: 153 LKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAK 212

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL--- 271
            V+D MPER+ ++  +M+  + K   ++ A +  + M +   V+W+ALIS Y   E+   
Sbjct: 213 DVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEE 272

Query: 272 KMLMLR------IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
            +++ +      I +DE    SV+SAC+   +   GK VH  +++       E  + + N
Sbjct: 273 ALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGI----ETYVNLQN 328

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
           AL+ +Y  C +V  A+ +F++    D +SWN+++S YV  G I++A++LF++M +++ +S
Sbjct: 329 ALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVS 388

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
           W+ MISG AQ     E L LF +M++EG KP +      I++C  L AL+ G+ +HA + 
Sbjct: 389 WSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIR 448

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIE 505
            +G   ++  G  LI MY + G VE A  VF  +      +WNA+I  L  +G   ++++
Sbjct: 449 KNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLK 508

Query: 506 LYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLL 565
            + +M + G+ P+ ITF+ VL AC H GLV EG R+F +M   + I P   HY   +DLL
Sbjct: 509 TFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLL 568

Query: 566 CRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYV 625
            RAG   EA+++I+S+P  P    W ALL  C+ +G+ + G +   +L +L P H G  V
Sbjct: 569 GRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDGFNV 628

Query: 626 LLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYK 685
           LLSN+YA+ G W D   VR +MR  GV K PGCS IE   +VH FL  D  HP+ + +  
Sbjct: 629 LLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQNEHIEH 688

Query: 686 YLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLK 745
            L+++  +++  GY PDT+ V  D++ ++KE  L  HSEKLA+AFGL+ +     +R++K
Sbjct: 689 MLDEMAKKLKLEGYAPDTREVSLDIDEEEKETTLFRHSEKLAIAFGLIAIDPPTPIRIVK 748

Query: 746 NLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           NLRIC DCH A K +SK   REIVVRD  RFHHF+ G CSC DYW
Sbjct: 749 NLRICNDCHTAAKLISKAFNREIVVRDRHRFHHFKQGSCSCMDYW 793



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 133/536 (24%), Positives = 244/536 (45%), Gaps = 91/536 (16%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +  H++  GF    +I N LI++Y     L  AR +FD     D+V+  +++A Y  
Sbjct: 145 GKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVL 204

Query: 94  SDNVKLAREMFNKTP-----------------------------LKMRDTVFYNAMITAY 124
             NV+ A++++++ P                             +K +D V ++A+I+ Y
Sbjct: 205 VGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCY 264

Query: 125 SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA--LIVEEEKQCMQMHCTVVKSGTG 182
             N     A+ LF++M  + +  D     SVLSA +  L+V   K    +H  VVK G  
Sbjct: 265 EQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGK---LVHGLVVKVGIE 321

Query: 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLD 242
            + ++ NALI +Y  C           +  A+++F E    D++SW +M++GYVK   ++
Sbjct: 322 TYVNLQNALIHMYSSCEE---------VVTAQKLFSESCCLDQISWNSMISGYVKCGEIE 372

Query: 243 AAREFLDGMSENVGVAWNALISGYVHR----ELKMLMLRIQL-----DEFTYTSVISACA 293
            AR   D M +   V+W+A+ISGY  +    E  +L   +Q+     DE    SVISAC 
Sbjct: 373 KARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACT 432

Query: 294 NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV 353
           +      GK +HAY+ +   K     ++ +   L+ +Y K G V +A ++F  + E+ + 
Sbjct: 433 HLAALDQGKWIHAYIRKNGLK----INIILGTTLINMYMKLGCVEDALEVFKGLEEKGVS 488

Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
           +WNA++      GL+D++                               LK FS+M+  G
Sbjct: 489 TWNALILGLAMNGLVDKS-------------------------------LKTFSEMKEHG 517

Query: 414 FKPCDYAFAGAITSCAGLGALENG-RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
             P +  F   + +C  +G ++ G R  ++ +       ++     ++ +  R G+++ A
Sbjct: 518 VTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEA 577

Query: 473 NCVFNTMPNVDSVS-WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
             +  +MP    VS W A++ A  ++G+      +  ++++  + PD   F  +LS
Sbjct: 578 EELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVE--LHPDHDGFNVLLS 631



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 108/249 (43%), Gaps = 17/249 (6%)

Query: 307 YLLRTEAKPT----PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE----RDLVSWNAI 358
           YL +    PT    P  +LP+   L T   KC  + +   I +QM      +D  + + +
Sbjct: 8   YLSKPFKIPTFTLKPTLTLPI---LETHLQKCQNIKQFNQILSQMILSGFFKDSFAASRL 64

Query: 359 L--SAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
           L  S  +    I+++  +F  +   N      M+ G  Q     + + ++  M       
Sbjct: 65  LKFSTELPFININQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAA 124

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
            +Y +     SC+   A  +G+ +   ++  G+DS +   N LI MYA CG +  A  VF
Sbjct: 125 DNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVF 184

Query: 477 NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536
           +    +D VSWN+M+A     GN   A ++Y++M +  ++       +++      G V+
Sbjct: 185 DGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNVIASN----SMIVLFGKKGNVE 240

Query: 537 EGRRYFETM 545
           E  + F  M
Sbjct: 241 EACKLFNEM 249


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 260/691 (37%), Positives = 380/691 (54%), Gaps = 69/691 (9%)

Query: 100 AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL 159
            R +F++  +K  +   +N MI     N     AIE +  MR +   P+NFTF  VL A 
Sbjct: 65  TRFLFHQ--IKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKAC 122

Query: 160 ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDE 219
           A +++ +   +++H  VVK G      V  +L+ +Y KC           +  A +VFD+
Sbjct: 123 ARLLDLQLG-VKIHTLVVKGGFDCDVFVKTSLVCLYAKC---------GYLEDAHKVFDD 172

Query: 220 MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQ 279
           +P+++ +SWT +++GY+    +   RE +D                      ++L + + 
Sbjct: 173 IPDKNVVSWTAIISGYIG---VGKFREAIDMFR-------------------RLLEMNLA 210

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            D FT   V+SAC   G    G+ +H  ++          ++ V  +LV +Y KCG + +
Sbjct: 211 PDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVR----NVFVGTSLVDMYAKCGNMEK 266

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
           AR +F+ MPE+D+VSW A++  Y   GL  EA                            
Sbjct: 267 ARSVFDGMPEKDIVSWGAMIQGYALNGLPKEA---------------------------- 298

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
              + LF QM+ E  KP  Y   G +++CA LGALE G  +   +  + +  +   G AL
Sbjct: 299 ---IDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTAL 355

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           I +YA+CG +  A  VF  M   D V WNA+I+ L  +G    +  L+ Q+ K GI PD 
Sbjct: 356 IDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDG 415

Query: 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579
            TF+ +L  C HAGLV EGRRYF +M+  + + P  +HY   +DLL RAG   EA  +I 
Sbjct: 416 NTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIR 475

Query: 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639
           ++P + +A +W ALL  CRIH +  L   A +QL +L P ++G YVLLSN+Y+   +WD+
Sbjct: 476 NMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDE 535

Query: 640 AARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGY 699
           AA+VR  M ++ ++K PGCSWIEVD  VH FLV D  HP ++ +Y  L++L  +M+  GY
Sbjct: 536 AAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGY 595

Query: 700 VPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKF 759
           VP T FVL D+E ++KE+ L  HSEKLA+AFGL+     A +RV+KNLR+CGDCH A K 
Sbjct: 596 VPTTDFVLFDIEEEEKEHFLGCHSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMAIKL 655

Query: 760 MSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +S + GREI VRD  RFH FR+G CSC DYW
Sbjct: 656 ISSITGREITVRDNNRFHCFREGSCSCNDYW 686



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 130/261 (49%), Gaps = 6/261 (2%)

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           N IL         +  + LF  +++ N+  W  MI GL  N   ++ ++ +  MR EGF 
Sbjct: 50  NMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFL 109

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P ++ F   + +CA L  L+ G ++H  +V  G+D  +    +L+ +YA+CG +E A+ V
Sbjct: 110 PNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKV 169

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           F+ +P+ + VSW A+I+     G    AI+++ ++L+  + PD  T + VLSAC   G +
Sbjct: 170 FDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDL 229

Query: 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
             G    + +    G+          +D+  + G   +A+ V D +P K     W A++ 
Sbjct: 230 NSGEWIHKCIM-EMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVS-WGAMIQ 287

Query: 596 GCRIHG----NIDLGIQAAEQ 612
           G  ++G     IDL +Q   +
Sbjct: 288 GYALNGLPKEAIDLFLQMQRE 308



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 129/284 (45%), Gaps = 40/284 (14%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           ++   T+L+  Y+   N++ AR +F+  P K  D V + AMI  Y+ N     AI+LF  
Sbjct: 247 NVFVGTSLVDMYAKCGNMEKARSVFDGMPEK--DIVSWGAMIQGYALNGLPKEAIDLFLQ 304

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL-NALISVYVKC 198
           M+R++VKPD +T   VLSA A +   E    +    +V     L+  VL  ALI +Y KC
Sbjct: 305 MQRENVKPDCYTVVGVLSACARLGALELG--EWVSGLVDRNEFLYNPVLGTALIDLYAKC 362

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
            S         M  A  VF  M E+D + W  +++G   N Y+  +     G  E +G  
Sbjct: 363 GS---------MSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLF-GQVEKLG-- 410

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                              I+ D  T+  ++  C ++GL   G++    + R  +  TP 
Sbjct: 411 -------------------IKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSL-TP- 449

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
            S+     +V L  + G ++EA  +   MP E + + W A+L A
Sbjct: 450 -SIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGA 492


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 266/784 (33%), Positives = 406/784 (51%), Gaps = 104/784 (13%)

Query: 7   DYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKL 66
           D +R +   YA  LQLC     +     R +H  +I++GF+    ++  ++ +Y K  ++
Sbjct: 139 DEVRLVVGDYACLLQLCGENLDLKK--GREIHGLIITNGFESNLFVMTAVMSLYAKCRQI 196

Query: 67  VYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSH 126
             A  +F+ +   D+V+ TT                                 ++  Y+ 
Sbjct: 197 DNAYKMFERMQHKDLVSWTT---------------------------------LVAGYAQ 223

Query: 127 NSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS 186
           N +   A++L   M+    KPD+ T  S+L A+A  ++  +    +H    +SG     +
Sbjct: 224 NGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVA-DMKALRIGRSIHGYAFRSGFESLVN 282

Query: 187 VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAARE 246
           V NAL+ +Y KC S+           AR VF  M  +  +SW TM+ G  +N        
Sbjct: 283 VTNALLDMYFKCGSARI---------ARLVFKGMRSKTVVSWNTMIDGCAQN-------- 325

Query: 247 FLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
              G SE     +           LKML         T   V+ ACAN G    G  VH 
Sbjct: 326 ---GESEEAFATF-----------LKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHK 371

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366
            L     K   + ++ V N+L+++Y KC +V                             
Sbjct: 372 LL----DKLKLDSNVSVMNSLISMYSKCKRV----------------------------- 398

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
             D A S+F  + + N+ +W  MI G AQNG  +E L LF  M+ +G K   +   G IT
Sbjct: 399 --DIAASIFNNLEKTNV-TWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVIT 455

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
           + A        + +H   V +  D+++    AL+ MYA+CG ++ A  +F+ M     ++
Sbjct: 456 ALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVIT 515

Query: 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546
           WNAMI   G HG G   ++L+ +M K  + P+ ITFL+V+SAC+H+G V+EG   F++M 
Sbjct: 516 WNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQ 575

Query: 547 GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLG 606
             Y + P  DHY+  +DLL RAG+  +A + I  +P KP   +  A+L  C+IH N++LG
Sbjct: 576 EDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELG 635

Query: 607 IQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNK 666
            +AA++LF+L P   G +VLL+N+YA+   WD  A+VR  M D+G+ K PGCSW+E+ N+
Sbjct: 636 EKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNE 695

Query: 667 VHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKL 726
           +H F    T HPE++ +Y +LE L  E++  GYVPD   + HD+E D K+  LS+HSE+L
Sbjct: 696 IHTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVPDPDSI-HDVEEDVKKQLLSSHSERL 754

Query: 727 AVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSC 786
           A+AFGL+    G T+ + KNLR+CGDCH+  K++S V GREI+VRD +RFHHF++G CSC
Sbjct: 755 AIAFGLLNTSPGTTLHIRKNLRVCGDCHDTTKYISLVTGREIIVRDLRRFHHFKNGSCSC 814

Query: 787 GDYW 790
           GDYW
Sbjct: 815 GDYW 818



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 135/522 (25%), Positives = 229/522 (43%), Gaps = 80/522 (15%)

Query: 84  RTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD 143
           +T +I+ +    +   A  +F    LK+   V Y+ M+  Y+ NS+   A+  F  M  D
Sbjct: 82  QTKVISLFCKFGSNSEAARVFEHVELKL--DVLYHIMLKGYAKNSSLGDALCFFLRMMCD 139

Query: 144 DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
           +V+     +  +L      ++ +K   ++H  ++ +G      V+ A++S+Y KC     
Sbjct: 140 EVRLVVGDYACLLQLCGENLDLKKG-REIHGLIITNGFESNLFVMTAVMSLYAKCRQ--- 195

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
                 +  A ++F+ M  +D +SWTT++ GY +N +   A + +  M E          
Sbjct: 196 ------IDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQE---------- 239

Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
           +G             + D  T  S++ A A+    R+G+ +H Y  R+      E  + V
Sbjct: 240 AGQ------------KPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGF----ESLVNV 283

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
            NAL+ +Y+KCG    AR +F  M  + +VSWN                           
Sbjct: 284 TNALLDMYFKCGSARIARLVFKGMRSKTVVSWNT-------------------------- 317

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
                MI G AQNG  EE    F +M  EG  P      G + +CA LG LE G  +H  
Sbjct: 318 -----MIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKL 372

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
           L     DS++S  N+LI+MY++C  V+ A  +FN +   + V+WNAMI    Q+G    A
Sbjct: 373 LDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTN-VTWNAMILGYAQNGCVKEA 431

Query: 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH----YA 559
           + L+  M  +GI  D  T + V++A     + ++ +     +HG   +    D+      
Sbjct: 432 LNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAK----WIHG-LAVRACMDNNVFVST 486

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
             +D+  + G    A+ + D +  +     W A++ G   HG
Sbjct: 487 ALVDMYAKCGAIKTARKLFDMMQ-ERHVITWNAMIDGYGTHG 527


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 254/725 (35%), Positives = 393/725 (54%), Gaps = 73/725 (10%)

Query: 66  LVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYS 125
           L+  R L D    P I       AA    D +  A  +FN   +   ++  YN MI   +
Sbjct: 44  LLKTRRLLD----PIITEAVLESAALLLPDTIDYALSIFNH--IDKPESSAYNVMIRGLA 97

Query: 126 HNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFT 185
              +   A+ LF+ M    V+ D FTF+SVL A + + +  ++  Q+H  ++KSG     
Sbjct: 98  FKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRM-KALREGEQVHALILKSGFKSNE 156

Query: 186 SVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245
            V N LI +Y  C           +G AR VFD MPER  ++W +M++GY KN       
Sbjct: 157 FVENTLIQMYANC---------GQIGVARHVFDGMPERSIVAWNSMLSGYTKNGL----- 202

Query: 246 EFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
                        W+ ++  +     K+L LRI+ D+ T  SV+ AC       +G+ + 
Sbjct: 203 -------------WDEVVKLF----RKILELRIEFDDVTMISVLMACGRLANLEIGELIG 245

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365
            Y++    +     +     +L+ +Y KCG+V+ AR +F++M +RD+V+W+A++S Y  A
Sbjct: 246 EYIVSKGLRRNNTLT----TSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQA 301

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425
               EA +LF  M++ N+                                P +      +
Sbjct: 302 DRCKEALNLFHEMQKGNVY-------------------------------PNEVTMVSVL 330

Query: 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV 485
            SCA LGA E G+ +H  +       +++ G  LI  YA+CG ++ +  VF  M   +  
Sbjct: 331 YSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVF 390

Query: 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETM 545
           +W A+I  L  +G G  A+E +  ML+  + P+ +TF+ VLSAC+HA LV +GR  F +M
Sbjct: 391 TWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSM 450

Query: 546 HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDL 605
              + I P  +HY   +D+L RAG   EA   ID++PF P+A +W  LLA CR H NI++
Sbjct: 451 RRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEM 510

Query: 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDN 665
             ++ E + +L P H+G Y+LLSN YA +GR +DA RVR L++++ +KK PGCS IE+D 
Sbjct: 511 AEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDG 570

Query: 666 KVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEK 725
            VH F  +D  H  ++ ++  L++++ ++++LGYVP+T     + E + KE ++S HSEK
Sbjct: 571 VVHEFFSEDGEHKHSKEIHDALDKMMKQIKRLGYVPNTDDARLEAEEESKETSVSHHSEK 630

Query: 726 LAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCS 785
           LA+A+GL++     T+R+ KNLR+C DCHNA KF+S+V  R I+VRD  RFHHF+DG CS
Sbjct: 631 LAIAYGLIRTSPRTTIRISKNLRMCRDCHNATKFISQVFERMIIVRDRNRFHHFKDGLCS 690

Query: 786 CGDYW 790
           C DYW
Sbjct: 691 CNDYW 695



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 117/499 (23%), Positives = 206/499 (41%), Gaps = 108/499 (21%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           ++S L+ C     +       VHA ++ SGFK  E + N LI +Y    ++  AR +FD 
Sbjct: 124 FSSVLKACSRMKALRE--GEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDG 181

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P+  IVA                                 +N+M++ Y+ N      ++
Sbjct: 182 MPERSIVA---------------------------------WNSMLSGYTKNGLWDEVVK 208

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LFR +    ++ D+ T  SVL A   +   E   + +   +V  G     ++  +LI +Y
Sbjct: 209 LFRKILELRIEFDDVTMISVLMACGRLANLEIGEL-IGEYIVSKGLRRNNTLTTSLIDMY 267

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            KC           +  AR++FDEM +RD ++W+ M++GY + D    A      M +  
Sbjct: 268 AKC---------GQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKG- 317

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                                 +  +E T  SV+ +CA  G +  GK VH Y+ + + K 
Sbjct: 318 ---------------------NVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKL 356

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
           T    + +   L+  Y KCG ++ + ++F +M  +++ +W                    
Sbjct: 357 T----VTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTW-------------------- 392

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
                      T +I GLA NG G+  L+ FS M     KP D  F G +++C+    ++
Sbjct: 393 -----------TALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVD 441

Query: 436 NGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAA 493
            GR L   +      +  +     ++ +  R G +E A    + MP   ++V W  ++A+
Sbjct: 442 QGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLAS 501

Query: 494 LGQHGNGARAIELYEQMLK 512
              H N    IE+ E+ L+
Sbjct: 502 CRAHKN----IEMAEKSLE 516



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 90/416 (21%), Positives = 167/416 (40%), Gaps = 74/416 (17%)

Query: 40  HMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKL 99
           +++S G +    +   LID+Y K  ++  AR LFDE+ + D+VA + +I+ Y+ +D  K 
Sbjct: 247 YIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCK- 305

Query: 100 AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL 159
                                            A+ LF +M++ +V P+  T  SVL + 
Sbjct: 306 --------------------------------EALNLFHEMQKGNVYPNEVTMVSVLYSC 333

Query: 160 ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDE 219
           A++   E     +H  + K    L  ++   LI  Y KC           +  +  VF E
Sbjct: 334 AMLGAYETG-KWVHFYIKKKKMKLTVTLGTQLIDFYAKC---------GYIDRSVEVFKE 383

Query: 220 MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQ 279
           M  ++  +WT ++ G   N     A EF   M EN                       ++
Sbjct: 384 MSFKNVFTWTALIQGLANNGEGKMALEFFSSMLEN----------------------DVK 421

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRT-EAKPTPEFSLPVNNALVTLYWKCGKVN 338
            ++ T+  V+SAC+++ L   G+ +   + R  + +P  E        +V +  + G + 
Sbjct: 422 PNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHY----GCMVDILGRAGFLE 477

Query: 339 EARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEA-KSLFEAMRERNLLS--WTVMISGLA 394
           EA    + MP   + V W  +L++  +   I+ A KSL    R     S  + ++ +  A
Sbjct: 478 EAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYA 537

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
             G  E+ +++ S ++ +  K         +         E+G   H++ +H   D
Sbjct: 538 LVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIHDALD 593


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 267/762 (35%), Positives = 397/762 (52%), Gaps = 107/762 (14%)

Query: 33   LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
            L + +H  ++ SG      + N LI++Y K+  +  AR++F ++ + D+++         
Sbjct: 953  LGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLIS--------- 1003

Query: 93   ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                    +N MI+  + +     ++ +F  + RD + PD FT 
Sbjct: 1004 ------------------------WNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTV 1039

Query: 153  TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
             SVL A + +        Q+H   +K+G  L + V  ALI VY         S R  M  
Sbjct: 1040 ASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVY---------SKRGKMEE 1090

Query: 213  ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
            A  +F      D  SW  +M GY+                          +SG   + L+
Sbjct: 1091 AEFLFVNQDGFDLASWNAIMHGYI--------------------------VSGDFPKALR 1124

Query: 273  MLMLRIQLDEFT--YTSVISACANSGLFRL--GKQVHAYLLRTEAKPTPEFSLPVNNALV 328
            + +L  +  E +   T V +A A  GL  L  GKQ+HA ++    K      L V + ++
Sbjct: 1125 LYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVV----KRGFNLDLFVTSGVL 1180

Query: 329  TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV 388
             +Y KCG+                               ++ A+ +F  +   + ++WT 
Sbjct: 1181 DMYLKCGE-------------------------------MESARRVFSEIPSPDDVAWTT 1209

Query: 389  MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG 448
            MISG  +NG  E  L  + QMRL   +P +Y FA  + +C+ L ALE GRQ+HA +V   
Sbjct: 1210 MISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLN 1269

Query: 449  YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
                     +L+ MYA+CG +E A  +F         SWNAMI  L QHGN   A++ ++
Sbjct: 1270 CAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFK 1329

Query: 509  QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568
             M   G++PDR+TF+ VLSAC+H+GLV E    F +M   YGI P  +HY+  +D L RA
Sbjct: 1330 YMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRA 1389

Query: 569  GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628
            G+  EA+ VI S+PF+ SA ++  LL  CR+  + + G + AE+L  L P  +  YVLLS
Sbjct: 1390 GRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLS 1449

Query: 629  NMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLE 688
            N+YA   +W++ A  R +MR   VKK+PG SW+++ NKVH+F+  D +H E   +Y  +E
Sbjct: 1450 NVYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVE 1509

Query: 689  QLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLR 748
             ++  +R+ GYVPDT F L D+E + KE +L  HSEKLA+A+GLMK P   T+RV+KNLR
Sbjct: 1510 YIMKRIREEGYVPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLR 1569

Query: 749  ICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            +CGDCH+A K++SKV  REIV+RD  RFHHFR+G CSCGDYW
Sbjct: 1570 VCGDCHSAIKYISKVFKREIVLRDANRFHHFRNGICSCGDYW 1611



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 157/643 (24%), Positives = 266/643 (41%), Gaps = 141/643 (21%)

Query: 30   TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
            + S + S+H + +  G +    +   L++IY K   +  AR LFD +   D+V    ++ 
Sbjct: 775  SPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMK 834

Query: 90   AY-----------------------------SASDNVKLAREMFNKTPLKM--------- 111
            AY                             + S  VK  + +      K          
Sbjct: 835  AYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKLFMYD 894

Query: 112  ---RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQ 168
                D + +N  ++ +        A++ F DM    V  D  TF  +L+ +A +      
Sbjct: 895  DDGSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGL-----N 949

Query: 169  CM----QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERD 224
            C+    Q+H  V++SG     SV N LI++YVK  S         +  AR VF +M E D
Sbjct: 950  CLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGS---------VSRARSVFGQMNEVD 1000

Query: 225  ELSWTTMMTGYVKNDYLDAAREFLDGMSE-NVGVAWNALISGYVHRELKMLMLRIQL--D 281
             +SW TM++G             L G+ E +VG+        +VH      +LR  L  D
Sbjct: 1001 LISWNTMISGCT-----------LSGLEECSVGM--------FVH------LLRDSLLPD 1035

Query: 282  EFTYTSVISACAN-SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
            +FT  SV+ AC++  G + L  Q+HA  +    K        V+ AL+ +Y K GK    
Sbjct: 1036 QFTVASVLRACSSLEGGYYLATQIHACAM----KAGVVLDSFVSTALIDVYSKRGK---- 1087

Query: 341  RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGE 400
                                       ++EA+ LF      +L SW  ++ G   +G   
Sbjct: 1088 ---------------------------MEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFP 1120

Query: 401  EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALI 460
            + L+L+  M+  G +        A  +  GL  L+ G+Q+HA +V  G++  L   + ++
Sbjct: 1121 KALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVL 1180

Query: 461  TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI 520
             MY +CG +E+A  VF+ +P+ D V+W  MI+   ++G    A+  Y QM    + PD  
Sbjct: 1181 DMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEY 1240

Query: 521  TFLTVLSACNHAGLVKEGRRYFETM------HGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
            TF T++ AC+    +++GR+    +        P+ +          +D+  + G   +A
Sbjct: 1241 TFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVM-------TSLVDMYAKCGNIEDA 1293

Query: 575  KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
            + +      +  A  W A++ G   HGN     + A Q F+ M
Sbjct: 1294 RGLFKRTNTRRIAS-WNAMIVGLAQHGN----AKEALQFFKYM 1331



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 147/624 (23%), Positives = 236/624 (37%), Gaps = 132/624 (21%)

Query: 32   SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
            SL +  HA +++SG  P   + N LI +Y K   L  AR LFD  P  +           
Sbjct: 673  SLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTN----------- 721

Query: 92   SASDNVKLAREMFNKTPLKMRDTVFYNAMITAY-SHNSNGHAAIELFRDMRRDDVKPDNF 150
                                RD V +NA+++A  +H    H    LFR +RR  V     
Sbjct: 722  --------------------RDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRH 761

Query: 151  TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
            T   V   + L+         +H   VK G      V  AL+++Y K           L+
Sbjct: 762  TLAPVFK-MCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKF---------GLI 811

Query: 211  GAARRVFDEMPERDELSWTTMMTGYV---------------------------------- 236
              AR +FD M  RD + W  MM  YV                                  
Sbjct: 812  REARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVV 871

Query: 237  --KNDYLD-------AAREFLDGMSENVGVAWNALISGYVHRE---------LKMLMLRI 278
              K + L+       A + F+     +  + WN  +S ++ R          + M+  R+
Sbjct: 872  KCKKNILELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRV 931

Query: 279  QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
              D  T+  +++  A      LGKQ+H  ++R+         + V N L+ +Y K G V+
Sbjct: 932  ACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQV----VSVGNCLINMYVKAGSVS 987

Query: 339  EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGY 398
             AR +F QM E DL+SWN                                MISG   +G 
Sbjct: 988  RARSVFGQMNEVDLISWN-------------------------------TMISGCTLSGL 1016

Query: 399  GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL-GALENGRQLHAQLVHSGYDSSLSAGN 457
             E  + +F  +  +   P  +  A  + +C+ L G      Q+HA  + +G         
Sbjct: 1017 EECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVST 1076

Query: 458  ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
            ALI +Y++ G +E A  +F      D  SWNA++      G+  +A+ LY  M + G   
Sbjct: 1077 ALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERS 1136

Query: 518  DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577
            D+IT +    A      +K+G++    +    G        +  +D+  + G+   A+ V
Sbjct: 1137 DQITLVNAAKAAGGLVGLKQGKQIHAVV-VKRGFNLDLFVTSGVLDMYLKCGEMESARRV 1195

Query: 578  IDSLPFKPSAPIWEALLAGCRIHG 601
               +P  P    W  +++GC  +G
Sbjct: 1196 FSEIP-SPDDVAWTTMISGCVENG 1218


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 218/510 (42%), Positives = 327/510 (64%), Gaps = 4/510 (0%)

Query: 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
           D  T+  ++ AC+     RLG+ +H+++ +          + V+N LV +Y  CG +  A
Sbjct: 135 DVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSS----EVSVSNFLVQMYASCGLIESA 190

Query: 341 RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGE 400
             +F++ PE D  SWN ++  Y+  G+   A+ +FEAM +R+++SW+VMI+G  Q    +
Sbjct: 191 GLVFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFK 250

Query: 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALI 460
           EGL LF  M  E  +P +     A+++CA LGA+E G+ +   +       ++  G ALI
Sbjct: 251 EGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALI 310

Query: 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI 520
            MY++CG VE A  VF+ M   + ++W+AMI  L  +G G  A+ L+ QM  +G+ P+ +
Sbjct: 311 DMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEV 370

Query: 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580
           TF+ +L+AC+H+ LV EG  +F +M   YG+ P   H+   +DL  RAG   +A+ VI S
Sbjct: 371 TFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKS 430

Query: 581 LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA 640
           +PFKP++ IW ALL  CRIHG+ +LG Q  ++L +L P+H G YVLLSN+YA  GRWD  
Sbjct: 431 MPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRV 490

Query: 641 ARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYV 700
           A +R++MR+R V K PGCS+I++ + +H F+  D++HP+ + +Y  L ++  E++  GY 
Sbjct: 491 AELRRMMRERQVSKTPGCSFIDLGDTIHEFVAGDSSHPQLEMIYAKLGEMSQELKAAGYK 550

Query: 701 PDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFM 760
           PDT  VL DM+ ++KE AL  HSEKLA+AFGL+K   G T+R+ KNLR+C DCH+A K +
Sbjct: 551 PDTGQVLLDMDEEEKETALCHHSEKLAIAFGLIKTDPGTTIRITKNLRVCADCHSATKLI 610

Query: 761 SKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           SK+  REI+VRD  RFHHFRDG CSC D+W
Sbjct: 611 SKIYNREIIVRDRCRFHHFRDGSCSCMDFW 640



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 139/502 (27%), Positives = 229/502 (45%), Gaps = 73/502 (14%)

Query: 61  CKSLK---LVYARTLFDEIPQPDIVARTTL-IAAYSASDNVKLAREMFNKTPLKMRDTVF 116
           CK+LK    ++A+T+   I   + VA   L  AA S   ++  AR +F +  ++  D   
Sbjct: 45  CKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYR--IRKPDIFI 102

Query: 117 YNAMITAYSHNSNGHAAIELFRDMRRDDVK-PDNFTFTSVLSALALIVEEEKQCMQMHCT 175
            N +I AY+ + N   A+  + +M    V  PD  TF  +L A + I    +    +H  
Sbjct: 103 ANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEI-PSLRLGEAIHSH 161

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
           V K G     SV N L+ +Y  C          L+ +A  VFD  PE D  SW  M+ GY
Sbjct: 162 VFKLGWSSEVSVSNFLVQMYASC---------GLIESAGLVFDRTPECDGASWNIMIGGY 212

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE---------LKMLMLRIQLDEFTYT 286
           +K     +AR   + M +   V+W+ +I+GYV              M+  +I+ +E    
Sbjct: 213 LKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLV 272

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
           + +SACA+ G    G+ +  Y+ R   +     ++ +  AL+ +Y KCG V  A ++F++
Sbjct: 273 NALSACAHLGAMEQGQWIERYMERKNVR----LTVRLGTALIDMYSKCGSVERALEVFHK 328

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
           M E+++++W+A                               MI+GLA NG G++ L LF
Sbjct: 329 MKEKNVLAWSA-------------------------------MINGLAINGQGKDALNLF 357

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ-LHAQLVHSGYDSSLSAGNALITMYAR 465
           SQM ++G KP +  F G + +C+    ++ G    H+     G   +      ++ +Y R
Sbjct: 358 SQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGR 417

Query: 466 CGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD-----R 519
            G+++ A  V  +MP   +S  W A++ A   HG+     EL EQ+ K  +  D     R
Sbjct: 418 AGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGD----TELGEQVGKRLLELDPNHGGR 473

Query: 520 ITFLT-VLSACNHAGLVKEGRR 540
              L+ + +AC     V E RR
Sbjct: 474 YVLLSNIYAACGRWDRVAELRR 495



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 145/332 (43%), Gaps = 42/332 (12%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L  ++H+H+   G+     + N L+ +Y     +  A  +FD  P+ D  +   +I  Y 
Sbjct: 154 LGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYL 213

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                K AR MF   P   RD V ++ MI  Y   S     + LF+DM  + ++P+    
Sbjct: 214 KCGVFKSARRMFEAMP--DRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVL 271

Query: 153 TSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
            + LSA A L   E+ Q ++ +  + +    L   +  ALI +Y KC S         + 
Sbjct: 272 VNALSACAHLGAMEQGQWIERY--MERKNVRLTVRLGTALIDMYSKCGS---------VE 320

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A  VF +M E++ L+W+ M+ G   N      ++ L+  S+                  
Sbjct: 321 RALEVFHKMKEKNVLAWSAMINGLAIN---GQGKDALNLFSQ------------------ 359

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQ-VHAYLLRTEAKPTPEFSLPVNNALVTL 330
            M M  ++ +E T+  +++AC++S L   G    H+       KP        +  +V L
Sbjct: 360 -MEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHH----HCCMVDL 414

Query: 331 YWKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
           Y + G +++A+ +   MP + +   W A+L+A
Sbjct: 415 YGRAGMLDQAQTVIKSMPFKPNSAIWGALLNA 446



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 135/331 (40%), Gaps = 52/331 (15%)

Query: 315 PTPEF--SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVS------AG 366
           PTP+     P+   L +    C  + +   I  Q     + S N + S  +S       G
Sbjct: 28  PTPQLLCKYPILRHLSS----CKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHG 83

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK-PCDYAFAGAI 425
            I  A+ LF  +R+ ++     +I   A +    + +  +S+M       P  + F   +
Sbjct: 84  SIPYARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLL 143

Query: 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV 485
            +C+ + +L  G  +H+ +   G+ S +S  N L+ MYA CG++E+A  VF+  P  D  
Sbjct: 144 KACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGA 203

Query: 486 SWNAMIAALGQHG------------------------NG-------ARAIELYEQMLKEG 514
           SWN MI    + G                        NG          + L++ M+ E 
Sbjct: 204 SWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEK 263

Query: 515 ILPDRITFLTVLSACNHAGLVKEGR---RYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571
           I P+    +  LSAC H G +++G+   RY E  +    +  G       ID+  + G  
Sbjct: 264 IEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLG----TALIDMYSKCGSV 319

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
             A +V   +  K +   W A++ G  I+G 
Sbjct: 320 ERALEVFHKMKEK-NVLAWSAMINGLAINGQ 349


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 261/679 (38%), Positives = 380/679 (55%), Gaps = 68/679 (10%)

Query: 117  YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL---SALALIVEEEKQCMQMH 173
            +N++I   +   +   A+  F  +R+  + P   +F   +   SAL  +V       Q  
Sbjct: 1110 WNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAF 1169

Query: 174  CTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMT 233
              V    T LF S  +ALI +Y KC           +  AR +FDE+P R+ +SWT+M+T
Sbjct: 1170 --VFGFETDLFVS--SALIDMYSKC---------GQLKDARALFDEIPLRNVVSWTSMIT 1216

Query: 234  GYVKNDYLD-AAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISAC 292
            GYV+N+  D A   F D + E   V                    + LD     SV+SAC
Sbjct: 1217 GYVQNEQADNALLLFKDFLEEETEVEDGN---------------NVPLDSVVMVSVLSAC 1261

Query: 293  ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL 352
            +      + + VH +++    K   + S+ V N L+  Y KCG+               L
Sbjct: 1262 SRVSGKGITEGVHGFVV----KKGFDGSIGVGNTLMDAYAKCGQ--------------PL 1303

Query: 353  VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RL 411
            VS                 K +F+ M E++ +SW  MI+  AQ+G   E L++F  M R 
Sbjct: 1304 VS-----------------KKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRH 1346

Query: 412  EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
             G +      +  + +CA  GAL  G+ +H Q++    + ++  G ++I MY +CG VE 
Sbjct: 1347 VGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEM 1406

Query: 472  ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
            A   F+ M   +  SW AM+A  G HG    A++++ +M++ G+ P+ ITF++VL+AC+H
Sbjct: 1407 AKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSH 1466

Query: 532  AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
            AGLV+EG  +F  M   Y I PG +HY   +DL  RAG  +EA ++I  +  KP   +W 
Sbjct: 1467 AGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWG 1526

Query: 592  ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
            +LL  CRIH N+DLG  AA++LF+L P + G YVLLSN+YA+ GRW D  R+R LM++R 
Sbjct: 1527 SLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQ 1586

Query: 652  VKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDME 711
            + K PG S +E+  +VHVFLV D  HP  + +YKYLE+L LE++K+GYVP+   VLHD++
Sbjct: 1587 LVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVD 1646

Query: 712  SDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVR 771
             ++KE  L  HSEKLAVAFG+M    G T+ ++KNLR+CGDCH   K +SK+V R+ VVR
Sbjct: 1647 EEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVR 1706

Query: 772  DGKRFHHFRDGKCSCGDYW 790
            D KRFHHF+DG CSCGDYW
Sbjct: 1707 DSKRFHHFKDGVCSCGDYW 1725



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 130/410 (31%), Positives = 201/410 (49%), Gaps = 39/410 (9%)

Query: 167 KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDEL 226
           K   Q+H  +++SG      +   LI +Y         S+   +  A  +F ++      
Sbjct: 41  KHLRQIHAKIIRSGLSNDQLLTRKLIHLY---------STHGRIAYAILLFYQIQNPCTF 91

Query: 227 SWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYT 286
           +W  ++               ++G+SE   + +             M+   I  D+FT+ 
Sbjct: 92  TWNLIIRANT-----------INGLSEQALMLYK-----------NMVCQGIAADKFTFP 129

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS--LPVNNALVTLYWKCGKVNEARDIF 344
            VI AC N     LGK VH  L++        FS  + V N L+  Y+KCG    A  +F
Sbjct: 130 FVIKACTNFLSIDLGKVVHGSLIKYG------FSGDVFVQNNLIDFYFKCGHTRFALKVF 183

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
            +M  R++VSW  ++S  +S G + EA+ +F+ +  +N++SWT MI+G  +N   EE L+
Sbjct: 184 EKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALE 243

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           LF +M+ E   P +Y     I +C  +G L  GR +H   + +  +  +  G ALI MY+
Sbjct: 244 LFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYS 303

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           +CG ++ A  VF TMP     +WN+MI +LG HG G  A+ L+ +M +  + PD ITF+ 
Sbjct: 304 KCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIG 363

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
           VL AC H   VKEG  YF  M   YGI P  +HY    +L  R+    EA
Sbjct: 364 VLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 124/461 (26%), Positives = 204/461 (44%), Gaps = 82/461 (17%)

Query: 78   QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
            + D+   + LI  YS    +K AR +F++ PL  R+ V + +MIT Y  N     A+ LF
Sbjct: 1174 ETDLFVSSALIDMYSKCGQLKDARALFDEIPL--RNVVSWTSMITGYVQNEQADNALLLF 1231

Query: 138  RDMRRDD--------VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLN 189
            +D   ++        V  D+    SVLSA +  V  +     +H  VVK G      V N
Sbjct: 1232 KDFLEEETEVEDGNNVPLDSVVMVSVLSACSR-VSGKGITEGVHGFVVKKGFDGSIGVGN 1290

Query: 190  ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD 249
             L+  Y KC   P VS        ++VFD M E+D++SW +M+  Y ++     A E   
Sbjct: 1291 TLMDAYAKC-GQPLVS--------KKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFH 1341

Query: 250  GMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
            GM  +VGV +NA+                     T ++V+ ACA++G  R GK +H  ++
Sbjct: 1342 GMVRHVGVRYNAV---------------------TLSAVLLACAHAGALRAGKCIHDQVI 1380

Query: 310  RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLID 369
            + +     E+++ V  +++ +Y KCG+V  A+  F++M E+++ SW A            
Sbjct: 1381 KMDL----EYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTA------------ 1424

Query: 370  EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
                               M++G   +G  +E L +F +M   G KP    F   + +C+
Sbjct: 1425 -------------------MVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACS 1465

Query: 430  GLGALENGRQLHAQLVHSGYD--SSLSAGNALITMYARCGVV-EAANCVFNTMPNVDSVS 486
              G +E G      + H  YD    +     ++ ++ R G + EA N +       D V 
Sbjct: 1466 HAGLVEEGWHWFNAMKHK-YDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVV 1524

Query: 487  WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
            W +++ A   H N     E+  Q L E + PD   +  +LS
Sbjct: 1525 WGSLLGACRIHKNVDLG-EIAAQKLFE-LDPDNCGYYVLLS 1563



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 141/303 (46%), Gaps = 36/303 (11%)

Query: 371  AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
            A   ++ + + N+ SW  +I+ LA+ G   E L+ FS +R  G  P   +F   I SC+ 
Sbjct: 1095 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSA 1154

Query: 431  LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
            L  L +GR  H Q    G+++ L   +ALI MY++CG ++ A  +F+ +P  + VSW +M
Sbjct: 1155 LCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSM 1214

Query: 491  IAALGQHGNGARAIELYEQMLKE--------GILPDRITFLTVLSACNHAGLVKEGRRYF 542
            I    Q+     A+ L++  L+E         +  D +  ++VLSAC+       G+   
Sbjct: 1215 ITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRV----SGKGIT 1270

Query: 543  ETMHGPYGIPPGEDHYA----RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCR 598
            E +HG + +  G D         +D   + G+   +K V D +  K     W +++A   
Sbjct: 1271 EGVHG-FVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDIS-WNSMIA--- 1325

Query: 599  IHGNIDLGIQAAEQLFQLMPHHAG--------TYVLLSNMYANLGRWDDAARVRKLMRDR 650
            ++    L  +A E +F  M  H G        + VLL+  +A       A R  K + D+
Sbjct: 1326 VYAQSGLSGEALE-VFHGMVRHVGVRYNAVTLSAVLLACAHAG------ALRAGKCIHDQ 1378

Query: 651  GVK 653
             +K
Sbjct: 1379 VIK 1381



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 113/242 (46%), Gaps = 30/242 (12%)

Query: 1   MMMKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIY 60
           M+ KN       A+++     +    N ++  L + VH  +I  GF     + N LID Y
Sbjct: 111 MLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFY 170

Query: 61  CKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAM 120
            K     +A  +F+++   ++V+ TT+I+   +  +++ AR +F++ P K  + V + AM
Sbjct: 171 FKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSK--NVVSWTAM 228

Query: 121 ITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQM-------- 172
           I  Y  N     A+ELF+ M+ +++ P+ +T  S++          K C +M        
Sbjct: 229 INGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLI----------KACTEMGILTLGRG 278

Query: 173 -HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
            H   +K+   +   +  ALI +Y KC S         +  A  VF+ MP +   +W +M
Sbjct: 279 IHDYAIKNCIEIGVYLGTALIDMYSKCGS---------IKDAIEVFETMPRKSLPTWNSM 329

Query: 232 MT 233
           +T
Sbjct: 330 IT 331



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 18/129 (13%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           T LI  YS   ++K A E+F   P K   T  +N+MIT+   +  G  A+ LF +M R +
Sbjct: 296 TALIDMYSKCGSIKDAIEVFETMPRKSLPT--WNSMITSLGVHGLGQEALNLFSEMERVN 353

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLN----ALISVYVKCVS 200
           VKPD  TF  VL            C  +H   VK G   FT +      A I  + +C++
Sbjct: 354 VKPDAITFIGVL------------CACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMT 401

Query: 201 SPFVSSRSL 209
             +  S +L
Sbjct: 402 ELYARSNNL 410


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 261/679 (38%), Positives = 380/679 (55%), Gaps = 68/679 (10%)

Query: 117  YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL---SALALIVEEEKQCMQMH 173
            +N++I   +   +   A+  F  +R+  + P   +F   +   SAL  +V       Q  
Sbjct: 1983 WNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAF 2042

Query: 174  CTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMT 233
              V    T LF S  +ALI +Y KC           +  AR +FDE+P R+ +SWT+M+T
Sbjct: 2043 --VFGFETDLFVS--SALIDMYSKC---------GQLKDARALFDEIPLRNVVSWTSMIT 2089

Query: 234  GYVKNDYLDAARE-FLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISAC 292
            GYV+N+  D A   F D + E   V                    + LD     SV+SAC
Sbjct: 2090 GYVQNEQADNALLLFKDFLEEETEVEDGN---------------NVPLDSVVMVSVLSAC 2134

Query: 293  ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL 352
            +      + + VH +++    K   + S+ V N L+  Y KCG+               L
Sbjct: 2135 SRVSGKGITEGVHGFVV----KKGFDGSIGVGNTLMDAYAKCGQ--------------PL 2176

Query: 353  VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RL 411
            VS                 K +F+ M E++ +SW  MI+  AQ+G   E L++F  M R 
Sbjct: 2177 VS-----------------KKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRH 2219

Query: 412  EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
             G +      +  + +CA  GAL  G+ +H Q++    + ++  G ++I MY +CG VE 
Sbjct: 2220 VGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEM 2279

Query: 472  ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
            A   F+ M   +  SW AM+A  G HG    A++++ +M++ G+ P+ ITF++VL+AC+H
Sbjct: 2280 AKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSH 2339

Query: 532  AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
            AGLV+EG  +F  M   Y I PG +HY   +DL  RAG  +EA ++I  +  KP   +W 
Sbjct: 2340 AGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWG 2399

Query: 592  ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
            +LL  CRIH N+DLG  AA++LF+L P + G YVLLSN+YA+ GRW D  R+R LM++R 
Sbjct: 2400 SLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQ 2459

Query: 652  VKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDME 711
            + K PG S +E+  +VHVFLV D  HP  + +YKYLE+L LE++K+GYVP+   VLHD++
Sbjct: 2460 LVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVD 2519

Query: 712  SDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVR 771
             ++KE  L  HSEKLAVAFG+M    G T+ ++KNLR+CGDCH   K +SK+V R+ VVR
Sbjct: 2520 EEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVR 2579

Query: 772  DGKRFHHFRDGKCSCGDYW 790
            D KRFHHF+DG CSCGDYW
Sbjct: 2580 DSKRFHHFKDGVCSCGDYW 2598



 Score =  215 bits (547), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 130/410 (31%), Positives = 201/410 (49%), Gaps = 39/410 (9%)

Query: 167 KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDEL 226
           K   Q+H  +++SG      +   LI +Y         S+   +  A  +F ++      
Sbjct: 41  KHLRQIHAKIIRSGLSNDQLLTRKLIHLY---------STHGRIAYAILLFYQIQNPCTF 91

Query: 227 SWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYT 286
           +W  ++               ++G+SE   + +             M+   I  D+FT+ 
Sbjct: 92  TWNLIIRANT-----------INGLSEQALMLYK-----------NMVCQGIAADKFTFP 129

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS--LPVNNALVTLYWKCGKVNEARDIF 344
            VI AC N     LGK VH  L++        FS  + V N L+  Y+KCG    A  +F
Sbjct: 130 FVIKACTNFLSIDLGKVVHGSLIKYG------FSGDVFVQNNLIDFYFKCGHTRFALKVF 183

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
            +M  R++VSW  ++S  +S G + EA+ +F+ +  +N++SWT MI+G  +N   EE L+
Sbjct: 184 EKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALE 243

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           LF +M+ E   P +Y     I +C  +G L  GR +H   + +  +  +  G ALI MY+
Sbjct: 244 LFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYS 303

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           +CG ++ A  VF TMP     +WN+MI +LG HG G  A+ L+ +M +  + PD ITF+ 
Sbjct: 304 KCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIG 363

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
           VL AC H   VKEG  YF  M   YGI P  +HY    +L  R+    EA
Sbjct: 364 VLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 124/461 (26%), Positives = 204/461 (44%), Gaps = 82/461 (17%)

Query: 78   QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
            + D+   + LI  YS    +K AR +F++ PL  R+ V + +MIT Y  N     A+ LF
Sbjct: 2047 ETDLFVSSALIDMYSKCGQLKDARALFDEIPL--RNVVSWTSMITGYVQNEQADNALLLF 2104

Query: 138  RDMRRDD--------VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLN 189
            +D   ++        V  D+    SVLSA +  V  +     +H  VVK G      V N
Sbjct: 2105 KDFLEEETEVEDGNNVPLDSVVMVSVLSACSR-VSGKGITEGVHGFVVKKGFDGSIGVGN 2163

Query: 190  ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD 249
             L+  Y KC   P VS        ++VFD M E+D++SW +M+  Y ++     A E   
Sbjct: 2164 TLMDAYAKC-GQPLVS--------KKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFH 2214

Query: 250  GMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
            GM  +VGV +NA+                     T ++V+ ACA++G  R GK +H  ++
Sbjct: 2215 GMVRHVGVRYNAV---------------------TLSAVLLACAHAGALRAGKCIHDQVI 2253

Query: 310  RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLID 369
            + +     E+++ V  +++ +Y KCG+V  A+  F++M E+++ SW A            
Sbjct: 2254 KMDL----EYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTA------------ 2297

Query: 370  EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
                               M++G   +G  +E L +F +M   G KP    F   + +C+
Sbjct: 2298 -------------------MVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACS 2338

Query: 430  GLGALENGRQLHAQLVHSGYD--SSLSAGNALITMYARCGVV-EAANCVFNTMPNVDSVS 486
              G +E G      + H  YD    +     ++ ++ R G + EA N +       D V 
Sbjct: 2339 HAGLVEEGWHWFNAMKHK-YDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVV 2397

Query: 487  WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
            W +++ A   H N     E+  Q L E + PD   +  +LS
Sbjct: 2398 WGSLLGACRIHKNVDLG-EIAAQKLFE-LDPDNCGYYVLLS 2436



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 138/288 (47%), Gaps = 26/288 (9%)

Query: 351  DLVSWNAILSAYVSAGLIDE---AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
            D +++N+IL   V +G  D    A   ++ + + N+ SW  +I+ LA+ G   E L+ FS
Sbjct: 1946 DGITYNSILFG-VPSGREDHSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFS 2004

Query: 408  QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467
             +R  G  P   +F   I SC+ L  L +GR  H Q    G+++ L   +ALI MY++CG
Sbjct: 2005 SLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCG 2064

Query: 468  VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE--------GILPDR 519
             ++ A  +F+ +P  + VSW +MI    Q+     A+ L++  L+E         +  D 
Sbjct: 2065 QLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDS 2124

Query: 520  ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA----RFIDLLCRAGKFSEAK 575
            +  ++VLSAC+       G+   E +HG + +  G D         +D   + G+   +K
Sbjct: 2125 VVMVSVLSACSRVS----GKGITEGVHG-FVVKKGFDGSIGVGNTLMDAYAKCGQPLVSK 2179

Query: 576  DVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623
             V D +  K     W +++A   ++    L  +A E +F  M  H G 
Sbjct: 2180 KVFDWMEEKDDIS-WNSMIA---VYAQSGLSGEALE-VFHGMVRHVGV 2222



 Score = 85.9 bits (211), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 113/242 (46%), Gaps = 30/242 (12%)

Query: 1   MMMKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIY 60
           M+ KN       A+++     +    N ++  L + VH  +I  GF     + N LID Y
Sbjct: 111 MLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFY 170

Query: 61  CKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAM 120
            K     +A  +F+++   ++V+ TT+I+   +  +++ AR +F++ P K  + V + AM
Sbjct: 171 FKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSK--NVVSWTAM 228

Query: 121 ITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQM-------- 172
           I  Y  N     A+ELF+ M+ +++ P+ +T  S++ A          C +M        
Sbjct: 229 INGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKA----------CTEMGILTLGRG 278

Query: 173 -HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
            H   +K+   +   +  ALI +Y KC S         +  A  VF+ MP +   +W +M
Sbjct: 279 IHDYAIKNCIEIGVYLGTALIDMYSKCGS---------IKDAIEVFETMPRKSLPTWNSM 329

Query: 232 MT 233
           +T
Sbjct: 330 IT 331



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 18/129 (13%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           T LI  YS   ++K A E+F   P K   T  +N+MIT+   +  G  A+ LF +M R +
Sbjct: 296 TALIDMYSKCGSIKDAIEVFETMPRKSLPT--WNSMITSLGVHGLGQEALNLFSEMERVN 353

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLN----ALISVYVKCVS 200
           VKPD  TF  VL            C  +H   VK G   FT +      A I  + +C++
Sbjct: 354 VKPDAITFIGVL------------CACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMT 401

Query: 201 SPFVSSRSL 209
             +  S +L
Sbjct: 402 ELYARSNNL 410


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 239/604 (39%), Positives = 356/604 (58%), Gaps = 67/604 (11%)

Query: 187 VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAARE 246
           +LN+LI +Y KC           +  AR VFD+MP RD +SWT ++ GY +N Y+ A   
Sbjct: 97  LLNSLIHMYCKC---------GAVSDARHVFDKMPSRDVVSWTYLIAGYAQN-YMPA--- 143

Query: 247 FLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
                 E +G+  +            ML  R + + FT+TS++ A    G   +G+Q+HA
Sbjct: 144 ------EAIGLLPD------------MLRARFRPNGFTFTSLLKATGACGGCSIGEQMHA 185

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366
             ++                     W                + D+   +A+L  Y    
Sbjct: 186 LAVKYN-------------------W----------------DEDVYVGSALLDMYARCE 210

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
            +D A  +F+ +  +N +SW  +I+G A+   GE  L  F++M+  GF    + ++   +
Sbjct: 211 QMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFS 270

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
           + A +GALE GR +HA L+ SG   +   GN ++ MYA+ G +  A  VF+ M   D V+
Sbjct: 271 AFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVT 330

Query: 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546
           WN M+ AL Q+G G  A+  +E++ K GI  ++ITFL+VL+AC+H GLVKEG+ YF+ M 
Sbjct: 331 WNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMK 390

Query: 547 GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLG 606
             Y + P  DHY  F+DLL RAG   EA   +  +P +P+A +W ALL  CR+H N  +G
Sbjct: 391 -DYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMG 449

Query: 607 IQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNK 666
             AA+ +F+L P   G  VLL N+YA+ G+W+DAARVRK+M+  GVKKEP CSW++++N 
Sbjct: 450 QYAADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENS 509

Query: 667 VHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKL 726
           VH+F+ DD  HP++  +Y+  E++ + ++K GYVP+T  VL  +   ++E  L  HSEK+
Sbjct: 510 VHMFVADDDTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKI 569

Query: 727 AVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSC 786
           A+AF L+ +P GA++R++KN+RICGDCH+AFK++SKV  REIVVRD  RFHHF +G CSC
Sbjct: 570 ALAFALINMPAGASIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSC 629

Query: 787 GDYW 790
           GDYW
Sbjct: 630 GDYW 633



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 168/392 (42%), Gaps = 83/392 (21%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           AR++HAH+  S       ++N LI +YCK                               
Sbjct: 79  ARAIHAHLSRSCLAGDAFLLNSLIHMYCKC------------------------------ 108

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
              V  AR +F+K P   RD V +  +I  Y+ N     AI L  DM R   +P+ FTFT
Sbjct: 109 -GAVSDARHVFDKMP--SRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFT 165

Query: 154 SVLSALALI----VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           S+L A        + E     QMH   VK        V +AL+ +Y +C           
Sbjct: 166 SLLKATGACGGCSIGE-----QMHALAVKYNWDEDVYVGSALLDMYARC---------EQ 211

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYV-KNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
           M  A  VFD +  ++E+SW  ++ G+  K D      +F +      G            
Sbjct: 212 MDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGAT---------- 261

Query: 269 RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALV 328
                         FTY+S+ SA A  G    G+ VHA+L+++  K T      V N ++
Sbjct: 262 -------------HFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAF----VGNTML 304

Query: 329 TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR----ERNLL 384
            +Y K G + +AR +F++M +RDLV+WN +L+A    GL  EA + FE +R    + N +
Sbjct: 305 GMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQI 364

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
           ++  +++  +  G  +EG   F  M+    +P
Sbjct: 365 TFLSVLTACSHGGLVKEGKHYFDMMKDYNVQP 396



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 149/336 (44%), Gaps = 48/336 (14%)

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           Y S+I+ACA        + +HA+L R+       F L   N+L+ +Y KCG V++AR +F
Sbjct: 63  YHSIIAACAQFKNLAGARAIHAHLSRS-CLAGDAFLL---NSLIHMYCKCGAVSDARHVF 118

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           ++MP RD+VSW                               T +I+G AQN    E + 
Sbjct: 119 DKMPSRDVVSW-------------------------------TYLIAGYAQNYMPAEAIG 147

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           L   M    F+P  + F   + +    G    G Q+HA  V   +D  +  G+AL+ MYA
Sbjct: 148 LLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYA 207

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           RC  ++ A  VF+ + + + VSWNA+IA   +  +G   +  + +M + G      T+ +
Sbjct: 208 RCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSS 267

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA----RFIDLLCRAGKFSEAKDVIDS 580
           + SA    G +++GR     +     I  G+   A      + +  ++G   +A+ V D 
Sbjct: 268 MFSAFARIGALEQGRWVHAHL-----IKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDR 322

Query: 581 LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           +  K     W  +L     +G   LG +A     ++
Sbjct: 323 MD-KRDLVTWNTMLTALAQYG---LGKEAVAHFEEI 354



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 83/198 (41%), Gaps = 8/198 (4%)

Query: 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALIT 461
           GL+    +      P    +   I +CA    L   R +HA L  S         N+LI 
Sbjct: 44  GLRELDLLHAGELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIH 103

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           MY +CG V  A  VF+ MP+ D VSW  +IA   Q+   A AI L   ML+    P+  T
Sbjct: 104 MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 163

Query: 522 FLTVLSACNHAGLVKEGRRYFETMHG-PYGIPPGEDHY--ARFIDLLCRAGKFSEAKDVI 578
           F ++L A    G    G    E MH         ED Y  +  +D+  R  +   A  V 
Sbjct: 164 FTSLLKATGACGGCSIG----EQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVF 219

Query: 579 DSLPFKPSAPIWEALLAG 596
           D L  K     W AL+AG
Sbjct: 220 DRLVSKNEVS-WNALIAG 236


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  467 bits (1202), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 256/679 (37%), Positives = 392/679 (57%), Gaps = 56/679 (8%)

Query: 117 YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTV 176
           +N MI  ++ +S+  +A+ L+  M    + P+++TF  +  + A   +  ++  Q+H  +
Sbjct: 46  WNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAK-SKAAQEGKQIHAQI 104

Query: 177 VKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV 236
           +K G  +   V  +LIS+Y +           ++  A +VFD    RD +S+T M+TGY 
Sbjct: 105 LKYGLTVDLHVHTSLISMYAQ---------NGIVEDAHKVFDTSSHRDVVSYTAMITGYA 155

Query: 237 KNDYLDAAREFLDGMSENVGVAWNALISGYV----HREL-----KMLMLRIQLDEFTYTS 287
               +D A++  D +     V+WNA+ISGY     ++E      +M+ + ++ DE T  +
Sbjct: 156 SRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMAT 215

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           V+S C +SG   LG+Q+H+++           +L + NAL+ LY KCG+           
Sbjct: 216 VLSTCTHSGNVELGRQIHSWIDNHGFGS----NLKLVNALIDLYSKCGE----------- 260

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
                               ++ A  LFE ++ ++++SW  +I G A   + +E L +F 
Sbjct: 261 --------------------MERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQ 300

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS--GYDSSLSAGNALITMYAR 465
           +M   G  P D      + +CA LGA++ GR +H  +     G  ++ S   +LI MYA+
Sbjct: 301 EMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAK 360

Query: 466 CGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTV 525
           CG +EAAN VF+T+ N    S NAMI     HG    A +L  +M K+GI PD ITF+ +
Sbjct: 361 CGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGL 420

Query: 526 LSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP 585
           LSAC+HAGL   GR+ F++M   Y I P  +HY   IDLL R+G F EA+++I+S+  +P
Sbjct: 421 LSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEP 480

Query: 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645
              IW +LL  C+IH N++LG   A++L ++ P + G+YVLLSN+YA   RWDD ARVR 
Sbjct: 481 DGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRT 540

Query: 646 LMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKF 705
           L+ D+G+KK PGCS IE+D+ VH FL+ D  HP+ + +YK LE++   + + G+V DT  
Sbjct: 541 LLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFHPQNKEIYKMLEEIDSLLAETGFVSDTSE 600

Query: 706 VLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVG 765
           VL +ME + KE ALS HSEKLA+AFGL+    G  +R++KNLR+C +CH A K +SK+  
Sbjct: 601 VLQEMEEELKEGALSYHSEKLAIAFGLISTKPGTKLRIVKNLRVCRNCHEATKLISKIYK 660

Query: 766 REIVVRDGKRFHHFRDGKC 784
           REI+ RD  RFHHF+DG C
Sbjct: 661 REIIARDRSRFHHFKDGMC 679



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/408 (29%), Positives = 209/408 (51%), Gaps = 31/408 (7%)

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C+ +P+      +  A  VF  + E ++LSW TM+ G+               +S +   
Sbjct: 19  CILTPYFHG---LPYAISVFKSIQEPNQLSWNTMIRGH--------------ALSSDPIS 61

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
           A N     YV+    M+ L +  + +T+  +  +CA S   + GKQ+HA +L    K   
Sbjct: 62  ALNL----YVY----MISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQIL----KYGL 109

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
              L V+ +L+++Y + G V +A  +F+    RD+VS+ A+++ Y S G +D+A+ +F+ 
Sbjct: 110 TVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDE 169

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
           +  ++++SW  MISG A+ G  +E L+LF++M     KP +   A  +++C   G +E G
Sbjct: 170 IPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELG 229

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           RQ+H+ + + G+ S+L   NALI +Y++CG +E A+ +F  +   D +SWN +I      
Sbjct: 230 RQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYI 289

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY-GIPPGED 556
            +   A+ ++++MLK G  P+ +T L++L AC H G +  GR     +     GI     
Sbjct: 290 NHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTS 349

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
                ID+  + G    A  V D++    S     A++ G  +HG  D
Sbjct: 350 LQTSLIDMYAKCGNIEAANQVFDTI-LNKSLSSCNAMIFGFAMHGRAD 396



 Score =  162 bits (411), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 122/468 (26%), Positives = 208/468 (44%), Gaps = 69/468 (14%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +HA ++  G     H+   LI +Y ++  +  A  +FD     D+V+ T +I  Y++
Sbjct: 97  GKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYAS 156

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
             N+  A++MF++ P+K  D V +NAMI+ Y+       A+ELF +M + DVKPD  T  
Sbjct: 157 RGNMDKAQKMFDEIPIK--DVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMA 214

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           +VLS        E    Q+H  +   G G    ++NALI +Y KC           M  A
Sbjct: 215 TVLSTCTHSGNVE-LGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGE---------MERA 264

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
             +F+ +  +D +SW T++ GY    Y++  +E L    E                   M
Sbjct: 265 HGLFEGLQYKDVISWNTLIGGYA---YINHHKEALLVFQE-------------------M 302

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
           L L    ++ T  S++ ACA+ G   +G+ +H Y+ +         SL    +L+ +Y K
Sbjct: 303 LKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSL--QTSLIDMYAK 360

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
           CG +  A  +F+ +  + L S NA                               MI G 
Sbjct: 361 CGNIEAANQVFDTILNKSLSSCNA-------------------------------MIFGF 389

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL-VHSGYDSS 452
           A +G  +    L S+M+ +G +P D  F G +++C+  G  + GR++   + +    +  
Sbjct: 390 AMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPK 449

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
           L     +I +  R G+ + A  + N+M    D V W +++ A   H N
Sbjct: 450 LEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKN 497



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 141/333 (42%), Gaps = 73/333 (21%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R +H+ + + GF     ++N LID+Y K  ++  A  LF+ +   D+++  TLI  Y+
Sbjct: 228 LGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYA 287

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
             ++ K                                  A+ +F++M +    P++ T 
Sbjct: 288 YINHHK---------------------------------EALLVFQEMLKLGETPNDVTM 314

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLF--TSVLNALISVYVKCVSSPFVSSRSLM 210
            S+L A A +   +     +H  + K   G+   TS+  +LI +Y KC +         +
Sbjct: 315 LSILPACAHLGAIDIG-RWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGN---------I 364

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
            AA +VFD +  +   S   M+ G+  +   DAA + L  M ++                
Sbjct: 365 EAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKD---------------- 408

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL-LRTEAKPTPEFSLPVNNALVT 329
                  I+ D+ T+  ++SAC+++GL  LG+++   + L    +P  E        ++ 
Sbjct: 409 ------GIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHY----GCMID 458

Query: 330 LYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
           L  + G   EA ++ N M  E D V W ++L A
Sbjct: 459 LLGRSGLFKEAEELINSMTMEPDGVIWGSLLKA 491


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  467 bits (1202), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 273/784 (34%), Positives = 414/784 (52%), Gaps = 69/784 (8%)

Query: 27  NPITSSLARSVHAHMISSG--FKP--REHIINRLIDIYCKS--LKLVYARTLFDEIPQPD 80
            P +   A  +HA +++SG    P    H++N L++ +  +  L L YA  LFD +P   
Sbjct: 8   TPRSVRQAAELHAVLVASGRLLHPPSASHLLNSLVNCFTPTDPLHLRYALCLFDRMPCST 67

Query: 81  IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
            +  T L A + AS                                 S   + + L+R M
Sbjct: 68  FLFDTALRACFRAS---------------------------------SGPESPLILYRRM 94

Query: 141 RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHC----TVVKSGTGLFTSVLNALISVYV 196
           RR  V  D FTF  +    A        C  +H     T++ S   L   V N +I +YV
Sbjct: 95  RRTGVCTDAFTFHFLFKCCARGRAHVLLCQMLHAACFRTMLPSAVPL---VSNPIIHMYV 151

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           +           L G ARR FD++P +D ++WTT+++G  K   LD A   L        
Sbjct: 152 EL---------GLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNV 202

Query: 257 VAWNALISGY---------VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY 307
           ++W  LISGY         V     ML   I+ DE T   ++SACA       G+ +H  
Sbjct: 203 ISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKL 262

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE-RDLVSWNAILSAYVSAG 366
           +     +     S  +  AL+ +Y KCG +  A ++F+ +   R   SWNA++  Y   G
Sbjct: 263 V----GEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLG 318

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
            +D A+ LF+ M +R+L+++  +I+G    G   E L LF QMR    +  ++     +T
Sbjct: 319 HVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLT 378

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
           +CA LGAL  GR LHA +     +  +  G AL+ MY +CG VE A+ VF  M   D  +
Sbjct: 379 ACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHT 438

Query: 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546
           W+AMIA L  +G G  A+E +  M  +G  P+ +T++ +L+AC+H+ L+ EGR YFE M 
Sbjct: 439 WSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMR 498

Query: 547 GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLG 606
             + I P  +HY   IDLL R+G   EA D++ ++P +P+A IW ++L+ CR+H + +L 
Sbjct: 499 LLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASILSACRVHKDANLA 558

Query: 607 IQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNK 666
             AAE L +L P     YV L N+Y +  +W+DA+++R+LM +RGVKK  G S I V  +
Sbjct: 559 RNAAEHLLKLEPDEDAVYVQLYNIYIDSRQWEDASQIRRLMEERGVKKAAGYSSITVAGQ 618

Query: 667 VHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKL 726
           VH F+V D  HP+   +   +E++   ++ +GY P T  +  D++ ++KE+AL  HSEK+
Sbjct: 619 VHKFIVCDRTHPQIMEITAMMEEITRRLKSVGYSPITSQITVDVDEEEKEHALLAHSEKI 678

Query: 727 AVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSC 786
           A+AFGL+ L     + ++KNLR+C DCH+A K +S++  REI+VRD  RFHHFRDG CSC
Sbjct: 679 AIAFGLISLAPNLPLHIIKNLRVCEDCHSAIKLISRIWNREIIVRDRSRFHHFRDGTCSC 738

Query: 787 GDYW 790
            D+W
Sbjct: 739 NDFW 742


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  467 bits (1202), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 248/717 (34%), Positives = 397/717 (55%), Gaps = 44/717 (6%)

Query: 79  PDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFR 138
           P   ++   IAA S+  +++ AR++F++ P    ++  +N +I AY+   +   +I  F 
Sbjct: 63  PYSASKLFAIAALSSFASLEYARKVFDEIP--QPNSFTWNTLIRAYASGPDPVCSIWAFL 120

Query: 139 DMRRDDVK--PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           DM   + +  P+ +TF  ++ A A  V        +H   +KS  G    V N+LI  Y 
Sbjct: 121 DMVSSESQCYPNKYTFPFLIKAAAE-VSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYF 179

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM-SENV 255
            C           + +A +VF  + E+D +SW +M+ G+V+    D A E    M SE+V
Sbjct: 180 SCGD---------LDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDV 230

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                                  +    T   V+SACA       G++V +Y+       
Sbjct: 231 -----------------------KASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVN- 266

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
               +L + NA++ +Y KCG + +A+ +F+ M E+D V+W  +L  Y  +   + A+ + 
Sbjct: 267 ---VNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVL 323

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSCAGLGAL 434
            AM ++++++W  +IS   QNG   E L +F +++L+   K         +++CA +GAL
Sbjct: 324 NAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGAL 383

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
           E GR +H+ +  +G   +    +ALI MY++CG +E A  VFN++   D   W+AMI  L
Sbjct: 384 ELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGL 443

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
             HG G+ A++++ +M +  + P+ +TF  V  AC+H GLV E    F  M   YGI P 
Sbjct: 444 AMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPE 503

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
           + HYA  +D+L R+G   +A   I+++P  PS  +W ALL  C+IH N+ L   A  +L 
Sbjct: 504 DKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLL 563

Query: 615 QLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDD 674
           +L P + G +VLLSN+YA  G+WD+ + +RK MR  G+KKEPGCS IE+D  +H FL  D
Sbjct: 564 ELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGD 623

Query: 675 TAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQ-KEYALSTHSEKLAVAFGLM 733
            AHP ++ VY  L +++ +++  GY P+   VL  +E ++ KE +L+ HSEKLA+ +GL+
Sbjct: 624 NAHPMSEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSLNLHSEKLAICYGLI 683

Query: 734 KLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
                  +RV+KNLR+CGDCH   K +S++  REI+VRD  RFHHFR+G+CSC D+W
Sbjct: 684 STEAPKAIRVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYRFHHFRNGQCSCNDFW 740



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 134/492 (27%), Positives = 216/492 (43%), Gaps = 105/492 (21%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKS--LKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           +  HAHMI +G     +  ++L  I   S    L YAR +FDEIPQP+     TLI AY+
Sbjct: 48  KQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYA 107

Query: 93  ASDN----------------------------VKLAREM--------FNKTPLKM---RD 113
           +  +                            +K A E+         +   +K     D
Sbjct: 108 SGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSD 167

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDV---------------------------- 145
               N++I  Y    +  +A ++F  ++  DV                            
Sbjct: 168 VFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMES 227

Query: 146 ---KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSG-TGLFTSVLNALISVYVKCVSS 201
              K  + T   VLSA A I + E    +  C+ ++     +  ++ NA++ +Y KC S 
Sbjct: 228 EDVKASHVTMVGVLSACAKIRDLEFG--RRVCSYIEENRVNVNLTLANAMLDMYTKCGS- 284

Query: 202 PFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNA 261
                   +  A+R+FD M E+D ++WTTM+ GY  ++  +AARE L+ M +   VAWNA
Sbjct: 285 --------IEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNA 336

Query: 262 LISGY-----------VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
           LIS Y           V  EL+ L   I+L++ T  S +SACA  G   LG+ +H+Y+ +
Sbjct: 337 LISAYEQNGKPNEALLVFHELQ-LQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKK 395

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
              K     +  V +AL+ +Y KCG + +AR++FN + +RD+  W+A++      G   E
Sbjct: 396 NGIK----MNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSE 451

Query: 371 AKSLFEAMRERNL----LSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAI 425
           A  +F  M+E N+    +++T +    +  G  +E   LF +M    G  P D  +A  +
Sbjct: 452 AVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIV 511

Query: 426 TSCAGLGALENG 437
                 G LE  
Sbjct: 512 DVLGRSGYLEKA 523



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 114/483 (23%), Positives = 214/483 (44%), Gaps = 101/483 (20%)

Query: 167 KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDEL 226
           +Q  Q H  +++  TG+F+   +A      K  +   +SS + +  AR+VFDE+P+ +  
Sbjct: 45  RQLKQTHAHMIR--TGMFSDPYSA-----SKLFAIAALSSFASLEYARKVFDEIPQPNSF 97

Query: 227 SWTTMMTGYVKN-DYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTY 285
           +W T++  Y    D + +   FLD +S       N                     ++T+
Sbjct: 98  TWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPN---------------------KYTF 136

Query: 286 TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFN 345
             +I A A      LG+ +H   +++         + V N+L+  Y+ CG ++ A  +F 
Sbjct: 137 PFLIKAAAEVSSLSLGQSLHGMAIKSAVGS----DVFVANSLIHCYFSCGDLDSACKVFT 192

Query: 346 QMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKL 405
            + E+D+VSWN++++ +V  G  D+A                               L+L
Sbjct: 193 TIKEKDVVSWNSMINGFVQKGSPDKA-------------------------------LEL 221

Query: 406 FSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465
           F +M  E  K       G +++CA +  LE GR++ + +  +  + +L+  NA++ MY +
Sbjct: 222 FKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTK 281

Query: 466 CGVV-------------------------------EAANCVFNTMPNVDSVSWNAMIAAL 494
           CG +                               EAA  V N MP  D V+WNA+I+A 
Sbjct: 282 CGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAY 341

Query: 495 GQHGNGARAIELYEQM-LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
            Q+G    A+ ++ ++ L++ I  ++IT ++ LSAC   G ++ G R+  +     GI  
Sbjct: 342 EQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELG-RWIHSYIKKNGIKM 400

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
                +  I +  + G   +A++V +S+  K    +W A++ G  +HG    G +A +  
Sbjct: 401 NFYVTSALIHMYSKCGDLEKAREVFNSVE-KRDVFVWSAMIGGLAMHG---CGSEAVDMF 456

Query: 614 FQL 616
           +++
Sbjct: 457 YKM 459



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 168/369 (45%), Gaps = 42/369 (11%)

Query: 52  IINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKM 111
           + N ++D+Y K   +  A+ LFD + + D V  TT++  Y+ S++ + ARE+ N  P K 
Sbjct: 271 LANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKK- 329

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMR-RDDVKPDNFTFTSVLSALALIVEEEKQCM 170
            D V +NA+I+AY  N   + A+ +F +++ + ++K +  T  S LSA A +   E    
Sbjct: 330 -DIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELG-R 387

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
            +H  + K+G  +   V +ALI +Y KC           +  AR VF+ + +RD   W+ 
Sbjct: 388 WIHSYIKKNGIKMNFYVTSALIHMYSKCGD---------LEKAREVFNSVEKRDVFVWSA 438

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           M+                       G+A +   S  V    KM    ++ +  T+T+V  
Sbjct: 439 MIG----------------------GLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFC 476

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           AC+++GL    + +  Y + +     PE        +V +  + G + +A      MP  
Sbjct: 477 ACSHTGLVDEAESLF-YKMESSYGIVPEDKHYA--CIVDVLGRSGYLEKAVKFIEAMPIP 533

Query: 351 DLVS-WNAILSA---YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
              S W A+L A   + +  L + A +    +  RN  +  ++ +  A++G  +   +L 
Sbjct: 534 PSTSVWGALLGACKIHANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELR 593

Query: 407 SQMRLEGFK 415
             MR+ G K
Sbjct: 594 KHMRVTGLK 602


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/700 (35%), Positives = 385/700 (55%), Gaps = 54/700 (7%)

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTG 182
           AY   ++ H A  L++ M  + +  DN+T+  ++ A + I   E +  Q+H  V+K G  
Sbjct: 187 AYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACS-IRRSEWEAKQVHNHVLKLGFD 245

Query: 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLD 242
               V N LI+ +  C         S M  A RVF+E    D +SW +++ GY++   ++
Sbjct: 246 SDVYVRNTLINCFSVC---------SNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVE 296

Query: 243 AAR-------------------------------EFLDGMSENVGVAWNALISGYVHREL 271
            A+                               +  D M E   V W+ALI+ +   E+
Sbjct: 297 EAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEM 356

Query: 272 KMLMLR---------IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
               +R         + +DE    S +SACAN  +  +GK +H+  L+       E  + 
Sbjct: 357 YEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGT----ESYIN 412

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
           + NAL+ +Y KCG +  AR +F++    DL+SWN+++S Y+   L+D AK++F++M E++
Sbjct: 413 LQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKD 472

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
           ++SW+ MISG AQN   +E L LF +M++ GFKP +      I++CA L ALE G+ +HA
Sbjct: 473 VVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHA 532

Query: 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
            +  +G   ++  G  LI MY +CG VE A  VF  M      +WNA+I  L  +G    
Sbjct: 533 YIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVES 592

Query: 503 AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562
           +++++  M K  + P+ ITF+ VL AC H GLV EG+ +F +M   + I P   HY   +
Sbjct: 593 SLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMV 652

Query: 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622
           DLL RAGK  EA+++++ +P  P    W ALL  C+ HG+ ++G +   +L +L P H G
Sbjct: 653 DLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDG 712

Query: 623 TYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQA 682
            +VLLSN+YA+ G+WDD   +R +M    V K PGCS IE +  +H FL  D  HP+  A
Sbjct: 713 FHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDA 772

Query: 683 VYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVR 742
           +   L ++ ++++  GY PD   VL D++ ++KE  L  HSEKLA+AFGL+ +     +R
Sbjct: 773 IEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIR 832

Query: 743 VLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDG 782
           ++KNLRIC DCH A K +SK   R+IVVRD  RFHHF  G
Sbjct: 833 IMKNLRICNDCHTAAKLISKAFCRKIVVRDRHRFHHFEQG 872



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 146/564 (25%), Positives = 246/564 (43%), Gaps = 93/564 (16%)

Query: 6   ADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLK 65
           ++Y+      Y   +Q C  R   +   A+ VH H++  GF    ++ N LI+ +     
Sbjct: 206 SNYLGADNYTYPLLIQACSIRR--SEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSN 263

Query: 66  LVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTP----------------- 108
           +  A  +F+E    D V+  +++A Y    NV+ A+ ++++ P                 
Sbjct: 264 MTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMR 323

Query: 109 ------------LKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
                       +  +D V ++A+I  +  N     AI  F  M +  V  D     S L
Sbjct: 324 GLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSAL 383

Query: 157 SALA--LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           SA A  L+V   K    +H   +K GT  + ++ NALI +Y KC           +  AR
Sbjct: 384 SACANLLVVNMGK---LIHSLSLKIGTESYINLQNALIYMYSKCGD---------IMVAR 431

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL--- 271
           ++FDE    D +SW +M++GY+K + +D A+   D M E   V+W+++ISGY   +L   
Sbjct: 432 KLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDE 491

Query: 272 ------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
                 +M M   + DE T  SVISACA       GK VHAY+ R         ++ +  
Sbjct: 492 TLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLT----INVILGT 547

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
            L+ +Y KCG V  A ++F  M E+ + +WNA+                           
Sbjct: 548 TLIDMYMKCGCVETALEVFYGMIEKGISTWNAL--------------------------- 580

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
               I GLA NG  E  L +FS M+     P +  F G + +C  +G ++ G+     ++
Sbjct: 581 ----ILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMI 636

Query: 446 HS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARA 503
           H      ++     ++ +  R G ++ A  + N MP   D  +W A++ A  +HG+    
Sbjct: 637 HDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMG 696

Query: 504 IELYEQMLKEGILPDRITFLTVLS 527
             +  ++++  + PD   F  +LS
Sbjct: 697 RRVGRKLIE--LQPDHDGFHVLLS 718


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 267/721 (37%), Positives = 392/721 (54%), Gaps = 97/721 (13%)

Query: 86  TLIAAYSASDNV-KLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR-D 143
           +L+ A +AS  +   A  +F   P     T  YN ++ A  H  +   A+ LF +M    
Sbjct: 54  SLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVA 113

Query: 144 DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTV----------VKSGTGLFTSVLNALIS 193
            V PD  T    L          K C +M CT+          VK G      VL++LI 
Sbjct: 114 SVCPDQHTVACAL----------KSCSRM-CTLDVGRGIQAYAVKRGLMADRFVLSSLIH 162

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
           +Y  C           + AA+ +FD + E   + W  ++T Y+KN       E   GM E
Sbjct: 163 MYASCRD---------VAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLE 213

Query: 254 NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
            VGVA+                     DE T  SV++AC   G  +LGK V  Y+     
Sbjct: 214 -VGVAF---------------------DEITLVSVVTACGRIGDAKLGKWVAEYV----- 246

Query: 314 KPTPEFSLPVN----NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLID 369
               E  L  N     AL+ +Y KCG++ +AR                            
Sbjct: 247 ---DEKGLVRNRNLMTALIDMYAKCGELGKAR---------------------------- 275

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
               LF+ M+ R++++W+ MISG  Q     E L LFS+M+L   +P D      +++CA
Sbjct: 276 ---RLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACA 332

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
            LGALE G+ +H+ +       ++  G AL+  YA+CG ++ A   F +MP  +S +W A
Sbjct: 333 VLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTA 392

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY 549
           +I  +  +G G  A+EL+  M K  I P  +TF+ VL AC+H+ LV+EGRR+F++M   Y
Sbjct: 393 LIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDY 452

Query: 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609
           GI P  +HY   +DLL RAG   EA   I ++P +P+A IW ALL+ C +H N+++G +A
Sbjct: 453 GIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEA 512

Query: 610 AEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHV 669
            +Q+  L P H+G Y+LLSN+YA++G+W +AA +RK M+DRG++K PGCS IE+D  V  
Sbjct: 513 LKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVE 572

Query: 670 FLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVA 729
           F  +D+ HP+ + +Y+ +E+++  ++  GY+P+T  V  +++  +KE ++S HSEKLA+A
Sbjct: 573 FFAEDSDHPQLKEIYQKVEEMIDRIKMAGYIPNTADVRLEVDEHEKEVSVSHHSEKLAIA 632

Query: 730 FGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
           FGLMKL  GAT+R+ KNLR+C DCH+A K +SKV  REIVVRD  RFHHF+DG CSC DY
Sbjct: 633 FGLMKLDPGATIRLSKNLRVCTDCHSATKLISKVYNREIVVRDRNRFHHFKDGTCSCNDY 692

Query: 790 W 790
           W
Sbjct: 693 W 693



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 119/279 (42%), Gaps = 40/279 (14%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           T LI  Y+    +  AR +F+   ++ RD V ++AMI+ Y+       A+ LF +M+  +
Sbjct: 259 TALIDMYAKCGELGKARRLFDG--MQSRDVVAWSAMISGYTQADQCREALALFSEMQLAE 316

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           V+P++ T  SVLSA A++   E     +H  + +    L   +  AL+  Y KC      
Sbjct: 317 VEPNDVTMVSVLSACAVLGALETG-KWVHSYIRRKRLSLTIILGTALVDFYAKC------ 369

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                +  A   F+ MP ++  +WT ++ G   N     A E    M +           
Sbjct: 370 ---GCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKA---------- 416

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPV 323
                        I+  + T+  V+ AC++S L   G++    + +    KP  E     
Sbjct: 417 ------------SIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEH---- 460

Query: 324 NNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
              +V L  + G ++EA      MP E + V W A+LS+
Sbjct: 461 YGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSS 499



 Score = 47.4 bits (111), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 81  IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
           I+  T L+  Y+    +  A E F   P+K  ++  + A+I   + N  G  A+ELF  M
Sbjct: 356 IILGTALVDFYAKCGCIDDAVEAFESMPVK--NSWTWTALIKGMATNGRGREALELFSSM 413

Query: 141 RRDDVKPDNFTFTSVLSAL--ALIVEEEKQ 168
           R+  ++P + TF  VL A   + +VEE ++
Sbjct: 414 RKASIEPTDVTFIGVLMACSHSCLVEEGRR 443


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/626 (37%), Positives = 368/626 (58%), Gaps = 68/626 (10%)

Query: 167 KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDEL 226
           ++  ++H  ++K+       +   LI +Y KC           +G ARRV DEMPER+ +
Sbjct: 27  REGQRVHAHMIKTCYEPPVYLRTRLIVLYNKC---------RCLGDARRVLDEMPERNVV 77

Query: 227 SWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYT 286
           SWT M++GY +  Y   A                      +H  ++MLM     +EFT+ 
Sbjct: 78  SWTAMISGYSQRGYASEA----------------------LHLFVEMLMSGTAPNEFTFA 115

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
           +V+++C +S  F+LG+Q+H+ +++T    + E  + V ++L+ +Y K GK+ EAR +F+ 
Sbjct: 116 TVLTSCTSSSGFQLGRQIHSLVIKT----SFESHIFVGSSLLDMYAKAGKICEARRVFDG 171

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
           +PERD+VS  AI+S Y   GL +EA                               L LF
Sbjct: 172 LPERDVVSCTAIISGYAQLGLDEEA-------------------------------LDLF 200

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
            +++ EG +     +A  +T+ +GL AL++GRQ+H+ ++ +     +   N+LI MY++C
Sbjct: 201 RRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKC 260

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG-ILPDRITFLTV 525
           G +  +  +F++MP    +SWNAM+    +HG G  A+EL++ M +E  + PD +TFL V
Sbjct: 261 GSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAV 320

Query: 526 LSACNHAGLVKEGRR-YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584
           LS C+H G+   G   ++E ++   G  P  +HY   +DL  RAG+  EA + I  +PF+
Sbjct: 321 LSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFE 380

Query: 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVR 644
           P+A IW +LL  CR+H N+ +G   A +L ++   +AG YV+LSN+YA+ GRWDD   VR
Sbjct: 381 PTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVR 440

Query: 645 KLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTK 704
           +LM+++ V KEPG SWIE+D  +H F   D +HP  + V+  + +L +++++ GYVP+  
Sbjct: 441 ELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELS 500

Query: 705 FVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVV 764
            VL+D++ +QKE  L  HSEKLA+AFGL+  PGG  VR++KNLRIC DCHN  KF+S+V 
Sbjct: 501 CVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKFLSRVY 560

Query: 765 GREIVVRDGKRFHHFRDGKCSCGDYW 790
           GRE+ +RD  RFHH   G CSCGDYW
Sbjct: 561 GREVSLRDKNRFHHIVGGTCSCGDYW 586



 Score =  149 bits (375), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 132/492 (26%), Positives = 216/492 (43%), Gaps = 114/492 (23%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y S L  C  +  I     + VHAHMI + ++P  ++  RLI +Y K       R L D 
Sbjct: 13  YDSVLTECISQTAIRE--GQRVHAHMIKTCYEPPVYLRTRLIVLYNK------CRCLGD- 63

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
                                   AR + ++ P   R+ V + AMI+ YS       A+ 
Sbjct: 64  ------------------------ARRVLDEMP--ERNVVSWTAMISGYSQRGYASEALH 97

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LF +M      P+ FTF +VL++        +   Q+H  V+K+       V ++L+ +Y
Sbjct: 98  LFVEMLMSGTAPNEFTFATVLTSCT-SSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMY 156

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            K            +  ARRVFD +PERD +S T +++GY +   L    E LD      
Sbjct: 157 AKA---------GKICEARRVFDGLPERDVVSCTAIISGYAQ---LGLDEEALD------ 198

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                      + R L+   +R   +  TY SV++A +       G+QVH+++LR +   
Sbjct: 199 -----------LFRRLQREGMRS--NYVTYASVLTALSGLAALDHGRQVHSHVLRAKLP- 244

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
              F + + N+L+ +Y KCG +  +R IF+ MPER ++SWNA+L  Y   GL  EA  LF
Sbjct: 245 ---FYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELF 301

Query: 376 EAMRERNL-----LSWTVMISGLAQNGYGEEGLKLFSQM--RLEGFKPCDYAFAGAITSC 428
           + M+E N      +++  ++SG +  G  + GL++F +M  + +GF+P            
Sbjct: 302 KLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEP------------ 349

Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-W 487
                         ++ H G          ++ ++ R G VE A      MP   + + W
Sbjct: 350 --------------EIEHYG---------CVVDLFGRAGRVEEAFEFIKKMPFEPTAAIW 386

Query: 488 NAMIAALGQHGN 499
            +++ A   H N
Sbjct: 387 GSLLGACRVHQN 398



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 7/177 (3%)

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
           M ++G +     +   +T C    A+  G+++HA ++ + Y+  +     LI +Y +C  
Sbjct: 1   MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC 60

Query: 469 VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
           +  A  V + MP  + VSW AMI+   Q G  + A+ L+ +ML  G  P+  TF TVL++
Sbjct: 61  LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 120

Query: 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHY---ARFIDLLCRAGKFSEAKDVIDSLP 582
           C  +   + GR+    +H        E H    +  +D+  +AGK  EA+ V D LP
Sbjct: 121 CTSSSGFQLGRQ----IHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLP 173


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 257/718 (35%), Positives = 387/718 (53%), Gaps = 74/718 (10%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + ++   T L+  Y+    +  A+E+F+K  +  RD V +N+MI+ +S +   +  +   
Sbjct: 151 ESNVYVSTALVDFYAKCGCLDDAKEVFDK--MHKRDVVAWNSMISGFSLHEGSYDEVARL 208

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
               ++DV P++ T   VL A+A  V   +   ++H   V+ G      V   ++ VY K
Sbjct: 209 LVQMQNDVSPNSSTIVGVLPAVAQ-VNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGK 267

Query: 198 CVSSPFVSSRSLMGAARRVFDEMP-ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           C    +         ARR+FD M   ++E++W+ M+  YV  D++  A E          
Sbjct: 268 CQCIDY---------ARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELF-------- 310

Query: 257 VAWNALISGYVHRELKMLMLR---IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
                          ++LML+   I L   T  +VI  CAN      G  +H Y +++  
Sbjct: 311 --------------CQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSG- 355

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
                F L                             DL+  N +LS Y   G+I+ A  
Sbjct: 356 -----FVL-----------------------------DLMVGNTLLSMYAKCGIINGAMR 381

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
            F  M  R+ +S+T +ISG  QNG  EEGL++F +M+L G  P     A  + +CA L  
Sbjct: 382 FFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAG 441

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
           L  G   H   +  G+ +     NALI MYA+CG ++ A  VF+ M     VSWN MI A
Sbjct: 442 LHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIA 501

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
            G HG G  A+ L++ M  EG+ PD +TF+ ++SAC+H+GLV EG+ +F  M   +GI P
Sbjct: 502 YGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIP 561

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
             +HYA  +DLL RAG F E    I+ +P +P   +W ALL+ CR++ N++LG   ++++
Sbjct: 562 RMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKI 621

Query: 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVD 673
            +L P   G +VLLSNMY+ +GRWDDAA+VR   +++G +K PGCSWIE+   VH FL  
Sbjct: 622 QKLGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGG 681

Query: 674 D-TAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGL 732
              +HP+   +   L++L++EM++LGY  ++ +V  D+E ++KE  L  HSEKLA+AFG+
Sbjct: 682 GYRSHPQLTQISNKLDELLVEMKRLGYQAESSYVFQDVEEEEKERVLLYHSEKLAIAFGI 741

Query: 733 MKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           + L     + V KNLR+CGDCH A KF+S V  R+I VRD  RFHHF+DG C+CGD+W
Sbjct: 742 LSLSPDKHIIVTKNLRVCGDCHTAIKFISLVTKRDITVRDASRFHHFKDGICNCGDFW 799



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 142/529 (26%), Positives = 239/529 (45%), Gaps = 80/529 (15%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           L+  Y A   +K+AR +F+K P + ++ V +N +I AY+ N     AI+L+  M    + 
Sbjct: 57  LVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGIT 116

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           P+ FTF  VL A + + +E  +  ++HC + +        V  AL+  Y KC        
Sbjct: 117 PNRFTFPFVLKACSAL-KEASEGREIHCDIKRLRLESNVYVSTALVDFYAKC-------- 167

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              +  A+ VFD+M +RD ++W +M++G+             +G  + V           
Sbjct: 168 -GCLDDAKEVFDKMHKRDVVAWNSMISGF----------SLHEGSYDEVA---------- 206

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
             R L  +   +  +  T   V+ A A     R GK++H + +R          + V   
Sbjct: 207 --RLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVG----DVVVGTG 260

Query: 327 LVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
           ++ +Y KC  ++ AR IF+ M   ++ V+W+A++ AYV    + EA  LF  +       
Sbjct: 261 ILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQL------- 313

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
             +M+         ++ + + S + L          A  I  CA L  L  G  LH   +
Sbjct: 314 --LML---------KDDVIVLSAVTL----------ATVIRVCANLTDLSTGTCLHCYAI 352

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIE 505
            SG+   L  GN L++MYA+CG++  A   FN M   D+VS+ A+I+   Q+GN    + 
Sbjct: 353 KSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLR 412

Query: 506 LYEQMLKEGILPDRITFLTVLSACNH-AGLVKEGRRYFETMHGPYGIPPGEDHYAR---- 560
           ++ +M   GI P++ T  +VL AC H AGL      ++ +    Y I  G          
Sbjct: 413 MFLEMQLSGINPEKATLASVLPACAHLAGL------HYGSCSHCYAIICGFTADTMICNA 466

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609
            ID+  + GK   A+ V D +  K     W  ++    IHG   +G++A
Sbjct: 467 LIDMYAKCGKIDTARKVFDRM-HKRGIVSWNTMIIAYGIHG---IGLEA 511



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 126/282 (44%), Gaps = 46/282 (16%)

Query: 274 LMLRIQLDEFTYTSVISACANS-GLFRLGKQVHAYLL----RTEAKPTPEFSLPVNNALV 328
           + LR +L     T ++ +C  S  LFR GK +H +LL    RT       F +P    LV
Sbjct: 1   MQLRTRLSLEYCTVLLESCIQSKSLFR-GKLIHQHLLKCLHRTHETNLTNFDVPFEK-LV 58

Query: 329 TLYWKCGKVNEARDIFNQMPER--DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
            LY  C ++  AR +F++MP R  ++V WN ++ AY                        
Sbjct: 59  DLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAY------------------------ 94

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
                  A NG  EE + L+ +M   G  P  + F   + +C+ L     GR++H  +  
Sbjct: 95  -------AWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEASEGREIHCDIKR 147

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH-GNGARAIE 505
              +S++    AL+  YA+CG ++ A  VF+ M   D V+WN+MI+    H G+      
Sbjct: 148 LRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVAR 207

Query: 506 LYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
           L  QM +  + P+  T + VL A      ++ G+     +HG
Sbjct: 208 LLVQM-QNDVSPNSSTIVGVLPAVAQVNSLRHGKE----IHG 244



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 33/123 (26%)

Query: 38  HAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNV 97
           H + I  GF     I N LID+Y K  K+  AR +FD + +  IV+              
Sbjct: 449 HCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVS-------------- 494

Query: 98  KLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLS 157
                              +N MI AY  +  G  A+ LF +M+ + +KPD+ TF  ++S
Sbjct: 495 -------------------WNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLIS 535

Query: 158 ALA 160
           A +
Sbjct: 536 ACS 538


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 269/729 (36%), Positives = 411/729 (56%), Gaps = 93/729 (12%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
            +L+  Y    N++ A ++F +  +  +D V +NAMI A      G  A+ LFR M + +
Sbjct: 263 NSLVTFYGKCGNLQHASQLFER--ISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVE 320

Query: 145 --VKPDNFTFTSVLSALALIVEEEKQC-MQMHCTVVKSGTGLFTSVLNALISVYVKCVSS 201
             V+P+  TF S+LSA++ +     +C  ++H  + +    + TS+ N+LI+ Y KC   
Sbjct: 321 PPVQPNRVTFLSLLSAVSGL--SALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCRE- 377

Query: 202 PFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNA 261
                   +G AR +F+ +  RD +SW +M+ GY +N              E  G  ++ 
Sbjct: 378 --------VGKAREIFERLLLRDIISWNSMLAGYEQN--------------EQQGRCFDI 415

Query: 262 LISGYVHRELKMLMLRIQLDEFTYTSVISACA--NSGL--FRLGKQVHAYLLRTEAKPTP 317
                     +M++  I+ D  + T + +A +  +SGL  FR GK++H Y+LR   + TP
Sbjct: 416 F--------KRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILR---RITP 464

Query: 318 E-FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
              SL V+NA++ +Y K          FN+                     I +A+ +F+
Sbjct: 465 GGVSLSVSNAILKMYAK----------FNR---------------------IADAEKIFK 493

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY-AFAGAITSCAGLGALE 435
            M+ R+  SW  M+ G ++N   E+ L +F  +  +GF P D+ + +  +TSC  L +L+
Sbjct: 494 GMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGF-PLDHVSLSILLTSCGRLVSLQ 552

Query: 436 NGRQLHAQLVH-------SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
            G+Q HA +            DS LS  NALI+MY++CG ++ A  VF  M   D  SW 
Sbjct: 553 LGKQFHAVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLKMERKDVFSWT 612

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP 548
           AMI     HG    A++L+E+M  +GI P+++TFL +L AC H GLV+EG  YF++M+  
Sbjct: 613 AMITGCAHHGLAVEALQLFERMKTDGIKPNQVTFLALLMACAHGGLVQEGSYYFDSMYND 672

Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS--LPFKPSAP----IWEALLAGCRIHGN 602
           YG+ P  +HYA  IDL  R+G+F  AK +++     FKP       +W+ LL  C     
Sbjct: 673 YGLSPSIEHYACMIDLFGRSGQFDRAKSLVEFGITLFKPYHDDILNLWKVLLGACHASKQ 732

Query: 603 IDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIE 662
           +DLG++AA ++ +L P    TY+LL+N+YA+ G W+DA +VRK MRD+G++KE GCSWI+
Sbjct: 733 LDLGVEAATKILELEPEDEATYILLANLYASSGLWEDAIKVRKAMRDKGLRKEVGCSWID 792

Query: 663 VDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTH 722
             N+ HVF+  D  HP+ + +Y+ L QL    R++GYVP T+ VLHD++  +KE  L  H
Sbjct: 793 TGNRRHVFVAGDVYHPQRKEIYEKLAQLNYSCRRMGYVPMTELVLHDVDETEKEAILGCH 852

Query: 723 SEKLAVAFGLMKLP-GGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRD 781
           SEKLAV+FGL+    G   +RV+KNLR+C DCH+  KF S +  REI++RD +RFH FRD
Sbjct: 853 SEKLAVSFGLLNCGVGNGVIRVMKNLRVCEDCHSWMKFASLLEKREILLRDSQRFHLFRD 912

Query: 782 GKCSCGDYW 790
           G CSCGDYW
Sbjct: 913 GSCSCGDYW 921



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 135/526 (25%), Positives = 244/526 (46%), Gaps = 85/526 (16%)

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR 142
           A +  + + S  + +K A+++F+  P   RD + ++A+I AYS   N   A  LF+ M  
Sbjct: 57  ACSKFLVSQSEHERLKCAQQLFDNFP--NRDVISWSALIAAYSRCGNFAQAFGLFQKMMG 114

Query: 143 DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSP 202
           + ++P+ F+  S+L  ++    E   C Q+H   +++G GL + +  A I++Y +C    
Sbjct: 115 EGLQPNGFSLASLLK-VSCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRC---- 169

Query: 203 FVSSRSLMGAARRVFDE--MPERDELSWTTMMTGYVKND-YLDAAREFLDGMSENVGVAW 259
                 ++  A+RVFDE  +   D L W +++  Y+ +  +++  R F   +S  VGV  
Sbjct: 170 -----GVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKMVS--VGV-- 220

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                             +   E TY SV++AC +SG  + G  VH  +++   + T  +
Sbjct: 221 ------------------VAPTELTYASVVNACGSSGEEKYGAMVHGRIIKAGLEATNLW 262

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
                N+LVT Y KCG +  A  +F ++  +D+VSWNA                      
Sbjct: 263 -----NSLVTFYGKCGNLQHASQLFERISRKDVVSWNA---------------------- 295

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RLE-GFKPCDYAFAGAITSCAGLGALENG 437
                    MI+   Q G GE  L LF +M ++E   +P    F   +++ +GL AL  G
Sbjct: 296 ---------MIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCG 346

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           R++HA +     +   S  N+LIT Y++C  V  A  +F  +   D +SWN+M+A   Q+
Sbjct: 347 REIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQN 406

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSAC--NHAGLV-----KEGRRYFETMHGPYG 550
               R  +++++M+  GI PD  +   + +A   + +GL+     KE   Y      P G
Sbjct: 407 EQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGG 466

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           +     +    + +  +  + ++A+ +   +  + S   W A++ G
Sbjct: 467 VSLSVSN--AILKMYAKFNRIADAEKIFKGMKNRDSYS-WNAMMDG 509



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 143/594 (24%), Positives = 259/594 (43%), Gaps = 88/594 (14%)

Query: 41  MISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQP----DIVARTTLIAAYSASDN 96
           M+  G +P    +  L+ + C + ++   R L     +     D   R   I  YS    
Sbjct: 112 MMGEGLQPNGFSLASLLKVSCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGV 171

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV-KPDNFTFTSV 155
           ++ A+ +F++T L   D + +N++I AY  +      + LF  M    V  P   T+ SV
Sbjct: 172 LEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASV 231

Query: 156 LSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARR 215
           ++A     EE+   M +H  ++K+G    T++ N+L++ Y KC +         +  A +
Sbjct: 232 VNACGSSGEEKYGAM-VHGRIIKAGLEA-TNLWNSLVTFYGKCGN---------LQHASQ 280

Query: 216 VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLM 275
           +F+ +  +D +SW  M+                   +E  G   NAL  G   R LK + 
Sbjct: 281 LFERISRKDVVSWNAMIAA-----------------NEQRGEGENAL--GLFRRMLK-VE 320

Query: 276 LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG 335
             +Q +  T+ S++SA +     R G+++HA++ R     + E    + N+L+T Y KC 
Sbjct: 321 PPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRL----SLEVDTSITNSLITFYSKCR 376

Query: 336 KVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQ 395
           +V +AR+I                               FE +  R+++SW  M++G  Q
Sbjct: 377 EVGKAREI-------------------------------FERLLLRDIISWNSMLAGYEQ 405

Query: 396 NGYGEEGLKLFSQMRLEGFKPCDYA----FAGAITSCAGLGALENGRQLHAQLVH--SGY 449
           N        +F +M L G +P  ++    F  A    +GL     G+++H  ++   +  
Sbjct: 406 NEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPG 465

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
             SLS  NA++ MYA+   +  A  +F  M N DS SWNAM+    ++      + ++  
Sbjct: 466 GVSLSVSNAILKMYAKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLD 525

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP--PGEDHYAR----FID 563
           +LK+G   D ++   +L++C     ++ G+++   +   +     P +D         I 
Sbjct: 526 ILKQGFPLDHVSLSILLTSCGRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALIS 585

Query: 564 LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           +  + G   +A  V   +  K     W A++ GC  HG   L ++A  QLF+ M
Sbjct: 586 MYSKCGSIKDAAQVFLKMERKDVFS-WTAMITGCAHHG---LAVEAL-QLFERM 634



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 159/347 (45%), Gaps = 51/347 (14%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + D     +LI  YS    V  ARE+F +  L +RD + +N+M+  Y  N       ++F
Sbjct: 359 EVDTSITNSLITFYSKCREVGKAREIFER--LLLRDIISWNSMLAGYEQNEQQGRCFDIF 416

Query: 138 RDMRRDDVKPDNFTFTSVLSALA-----LIVEEEKQCMQMHCTVVKSGT--GLFTSVLNA 190
           + M    ++PD+ + T + +A +     LI     +  ++H  +++  T  G+  SV NA
Sbjct: 417 KRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGK--EIHGYILRRITPGGVSLSVSNA 474

Query: 191 LISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKN-DYLDAAREFLD 249
           ++ +Y K          + +  A ++F  M  RD  SW  MM GY +N  + D    FLD
Sbjct: 475 ILKMYAKF---------NRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLD 525

Query: 250 GMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY-- 307
            + +                          LD  + + ++++C      +LGKQ HA   
Sbjct: 526 ILKQG-----------------------FPLDHVSLSILLTSCGRLVSLQLGKQFHAVVA 562

Query: 308 -LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366
            L   +  P  +  L +NNAL+++Y KCG + +A  +F +M  +D+ SW A+++     G
Sbjct: 563 KLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLKMERKDVFSWTAMITGCAHHG 622

Query: 367 LIDEAKSLFEAMR----ERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
           L  EA  LFE M+    + N +++  ++   A  G  +EG   F  M
Sbjct: 623 LAVEALQLFERMKTDGIKPNQVTFLALLMACAHGGLVQEGSYYFDSM 669



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 12/139 (8%)

Query: 469 VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
           ++ A  +F+  PN D +SW+A+IAA  + GN A+A  L+++M+ EG+ P+  +  ++L  
Sbjct: 71  LKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKV 130

Query: 529 CNHAGLVKEGRRYFETMHG-----PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF 583
               G +   R+    +HG      +G+  G    A +I +  R G   +A+ V D    
Sbjct: 131 SCSTGEIGLCRQ----LHGWSIRTGFGLDSGIR--AAWITMYSRCGVLEDAQRVFDETSL 184

Query: 584 KP-SAPIWEALLAGCRIHG 601
                 +W +++A    HG
Sbjct: 185 LALDILLWNSIIAAYIFHG 203


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 270/770 (35%), Positives = 417/770 (54%), Gaps = 92/770 (11%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLK---LVYARTLFDEIPQPDIVARTTLIAAY 91
           R +HA MI +G     + +++LI+    S     L YA ++F+ I +P+++         
Sbjct: 19  RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLL--------- 69

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                                    +N M   ++ +S+  +A+ L+  M    + P+ +T
Sbjct: 70  ------------------------IWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYT 105

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           F  +L + A   +  ++  Q+H  V+K G  L   V  +LIS+YV+            + 
Sbjct: 106 FPFLLKSCAK-SKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQ---------NGRLE 155

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR-- 269
            AR+VFD+   RD +S+T ++TGY    Y+ +A++  D +     V+WNA+ISGY     
Sbjct: 156 DARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGN 215

Query: 270 -----EL--KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
                EL  +M+   ++ DE T  SV+SACA S    LG+QVH+++           +L 
Sbjct: 216 NKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGS----NLK 271

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
           + NAL+ LY KC                               G ++ A  LFE +  ++
Sbjct: 272 IVNALIDLYIKC-------------------------------GEVETACGLFEGLSYKD 300

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
           ++SW  +I G       +E L LF +M   G  P D      + +CA LGA+E GR +H 
Sbjct: 301 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHV 360

Query: 443 QLVH--SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
            +     G  ++ S   +LI MYA+CG +EAA  VF+++ N    SWNAMI     HG  
Sbjct: 361 YINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRA 420

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
             A +++ +M K  I PD ITF+ +LSAC+H+G++  GR  F +M   Y I P  +HY  
Sbjct: 421 NAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGC 480

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
            IDLL  +G F EA+++I+++  +P   IW +LL  C+++ N++LG   A+ L ++ P +
Sbjct: 481 MIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKN 540

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEA 680
            G+YVLLSN+YA  GRW++ A++R L+ D+G+KK PGCS IE+D+ VH F++ D  HP  
Sbjct: 541 PGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRN 600

Query: 681 QAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT 740
           + +Y  LE++ + + + G+VPDT  VL +ME + KE AL  HSEKLA+AFGL+    G  
Sbjct: 601 REIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTK 660

Query: 741 VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           + ++KNLR+C +CH A K +SK+  REI+ RD  RFHHFRDG CSC DYW
Sbjct: 661 LTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 163/388 (42%), Gaps = 72/388 (18%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R VH+ +   GF     I+N LID+Y K  ++  A  LF+ +   D+++  TLI  Y+
Sbjct: 253 LGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYT 312

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
              ++ L +E                              A+ LF++M R    P++ T 
Sbjct: 313 ---HMNLYKE------------------------------ALLLFQEMLRSGESPNDVTM 339

Query: 153 TSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
            S+L A A L   E  + + ++      G    +S   +LI +Y KC           + 
Sbjct: 340 LSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGD---------IE 390

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
           AA++VFD +  R   SW  M+ G+  +   +AA +    M +N                 
Sbjct: 391 AAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKN----------------- 433

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                 I+ D+ T+  ++SAC++SG+  LG+ +    ++ + K TP+  L     ++ L 
Sbjct: 434 -----EIEPDDITFVGLLSACSHSGMLDLGRHIFRS-MKEDYKITPK--LEHYGCMIDLL 485

Query: 332 WKCGKVNEARDIFNQMP-ERDLVSWNAILSA---YVSAGLIDEAKSLFEAMRERNLLSWT 387
              G   EA ++ N M  E D V W ++L A   Y +  L +        +  +N  S+ 
Sbjct: 486 GHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYV 545

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           ++ +  A  G   E  K+ + +  +G K
Sbjct: 546 LLSNIYATAGRWNEVAKIRALLNDKGMK 573


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 258/709 (36%), Positives = 388/709 (54%), Gaps = 75/709 (10%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           + L  AY+ + ++  A       P        +NA++ A+S  ++ H A+ +FR +    
Sbjct: 40  SCLATAYARAGDLAAAESTLATAPTSPSSIPAWNALLAAHSRGASPHEALRVFRALP-PA 98

Query: 145 VKPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
            +PD+ TFT  LSA A + +    + +    +    G  +F  V ++++++Y KC     
Sbjct: 99  ARPDSTTFTLALSACARLGDLATGEVVTDRASGAGYGNDIF--VCSSVLNLYAKC----- 151

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
                 M  A +VFD M +RD ++W+TM+TG+V                 N G    A+ 
Sbjct: 152 ----GAMDDAVKVFDRMRKRDRVTWSTMVTGFV-----------------NAGQPVQAI- 189

Query: 264 SGYVHRELKMLMLR--IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
                 E+ M M R  ++ DE     V+ ACA +G  R+G  VH YLLR       +  +
Sbjct: 190 ------EMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAM----QMDV 239

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
            ++ +LV +Y K G  ++AR +F  MP R+ VSW+A++S     G  DEA          
Sbjct: 240 VISTSLVDMYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEA---------- 289

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
                                L LF  M++ G  P      GA+ +C+ LG L+ G+ +H
Sbjct: 290 ---------------------LGLFRMMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIH 328

Query: 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGA 501
             ++ +  +     G A+I MY++CG + +A  +F+ + + D +SWN MIA  G HG G 
Sbjct: 329 GFILRT-LELDRMVGTAVIDMYSKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGR 387

Query: 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF 561
            A+ L+++M +  + PD  TF ++LSA +H+GLV+EG+ +F  M   YGI PGE H    
Sbjct: 388 DALSLFQEMKRNEVRPDHATFASLLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKHLVCI 447

Query: 562 IDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621
           +DLL R+G   EA  ++ SL  KP+  I  ALL+GC  +  ++LG   AE++ +L P   
Sbjct: 448 VDLLARSGLVEEANGLVASLHSKPTISILVALLSGCLNNNKLELGESTAEKILELQPGDV 507

Query: 622 GTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQ 681
           G   L+SN+YA    W     VRKLM+D G KK PGCS IE+   +H F+++D +HP+ +
Sbjct: 508 GVLALVSNLYAAAKNWYKVREVRKLMKDHGSKKAPGCSSIEIRGALHTFVMEDQSHPQHR 567

Query: 682 AVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATV 741
            + + + +L  EMRK+GY+P T+FV HD+E   KE  LS HSE+LA AFGL+    G  +
Sbjct: 568 QILQMVMKLDSEMRKMGYIPKTEFVYHDLEEGVKEQLLSRHSERLATAFGLLNTSPGTRL 627

Query: 742 RVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            V+KNLR+CGDCH+A K+MSK+  REIVVRD KRFHHF+DG CSCGDYW
Sbjct: 628 VVIKNLRVCGDCHDAIKYMSKIADREIVVRDAKRFHHFKDGACSCGDYW 676



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 12/114 (10%)

Query: 62  KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMI 121
           KS+     RTL     + D +  T +I  YS   ++  A+ +F+K  +  RD + +N MI
Sbjct: 325 KSIHGFILRTL-----ELDRMVGTAVIDMYSKCGSLSSAQMLFDK--VVSRDLISWNVMI 377

Query: 122 TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALAL--IVEEEK---QCM 170
                +  G  A+ LF++M+R++V+PD+ TF S+LSAL+   +VEE K    CM
Sbjct: 378 ACCGAHGRGRDALSLFQEMKRNEVRPDHATFASLLSALSHSGLVEEGKFWFNCM 431


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 246/704 (34%), Positives = 378/704 (53%), Gaps = 69/704 (9%)

Query: 87   LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
            L+  Y+   +++ A   F +T  ++ + V +N M+ AY    +   +  +FR M+ +++ 
Sbjct: 413  LLNLYAKCSDIETALNYFLET--EVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIV 470

Query: 147  PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
            P+ +T+ S+L     + + E    Q+H  ++K+   L   V + LI +Y K         
Sbjct: 471  PNQYTYPSILKTCIRLGDLELG-EQIHSQIIKTSFQLNAYVCSVLIDMYAKL-------- 521

Query: 207  RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
               +  A  +      +D +SWTTM+ GY + ++ D A                      
Sbjct: 522  -GKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFR----------------- 563

Query: 267  VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                 +ML   I+ DE   T+ +SACA     + G+Q+HA    +         LP  NA
Sbjct: 564  -----QMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSS----DLPFQNA 614

Query: 327  LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
            LVTLY KCG                                I+EA   FE     + ++W
Sbjct: 615  LVTLYSKCGN-------------------------------IEEAYLAFEQTEAGDNIAW 643

Query: 387  TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
              ++SG  Q+G  EE L++F++M  EG    ++ F  A+ + +    ++ G+Q+HA +  
Sbjct: 644  NALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITK 703

Query: 447  SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
            +GYDS     NA+I+MYA+CG +  A   F  +   + VSWNAMI A  +HG G+ A++ 
Sbjct: 704  TGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDS 763

Query: 507  YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
            ++QM+   + P+ +T + VLSAC+H GLV +G  YFE+M+  YG+ P  +HY   +D+L 
Sbjct: 764  FDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLT 823

Query: 567  RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626
            RAG  S AKD I  +P +P A +W  LL+ C +H N+++G  AA  L +L P  + TYVL
Sbjct: 824  RAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVL 883

Query: 627  LSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKY 686
            LSN+YA   +WD     R+ M+++GVKKEPG SWIEV N +H F V D  HP A  +++Y
Sbjct: 884  LSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEY 943

Query: 687  LEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKN 746
             + L     ++GYV D   +L +++ +QK+  +  HSEKLA++FGL+ LP    + V+KN
Sbjct: 944  FKDLTKRASEIGYVQDCFSLLSELQQEQKDPTIFIHSEKLAISFGLLSLPATMPINVMKN 1003

Query: 747  LRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            LR+C DCH+  KF+SKV  REI+VRD  RFHHF  G CSC DYW
Sbjct: 1004 LRVCNDCHDWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1047



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 146/623 (23%), Positives = 260/623 (41%), Gaps = 122/623 (19%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           ++S L  C     +   +   +H  ++  GF    ++ N L+ +Y     L+ A  +F  
Sbjct: 274 FSSVLSACKKIESL--EIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSN 331

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           + Q                                 RD V YN +I   S    G  A+E
Sbjct: 332 MSQ---------------------------------RDAVTYNTLINGLSQCGYGEKAME 358

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALA----LIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
           LF+ M+ D ++PD+ T  S++ A +    L   +     Q+H    K G      +  AL
Sbjct: 359 LFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQ-----QLHAYTTKLGFASNDKIEGAL 413

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY-VKNDYLDAAREFLDG 250
           +++Y KC         S +  A   F E    + + W  M+  Y + +D  ++ R F   
Sbjct: 414 LNLYAKC---------SDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIF--- 461

Query: 251 MSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
                                +M +  I  +++TY S++  C   G   LG+Q+H+ +++
Sbjct: 462 --------------------RQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIK 501

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
           T    + + +  V + L+ +Y K GK++ A DI  +   +D+VSW  +++ Y        
Sbjct: 502 T----SFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGY-------- 549

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
                                   Q  + ++ L  F QM   G +  +     A+++CAG
Sbjct: 550 -----------------------TQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAG 586

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
           L AL+ G+Q+HAQ   SG+ S L   NAL+T+Y++CG +E A   F      D+++WNA+
Sbjct: 587 LQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNAL 646

Query: 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
           ++   Q GN   A+ ++ +M +EGI  +  TF + + A +    +K+G++    +    G
Sbjct: 647 VSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVI-TKTG 705

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
                +     I +  + G  S+AK     L  K     W A++     HG    G +A 
Sbjct: 706 YDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVS-WNAMINAYSKHG---FGSEAL 761

Query: 611 EQLFQLM-----PHHAGTYVLLS 628
           +   Q++     P+H     +LS
Sbjct: 762 DSFDQMIHSNVRPNHVTLVGVLS 784



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 146/572 (25%), Positives = 245/572 (42%), Gaps = 119/572 (20%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R +H+ ++  GF     +  +L+D Y     L  A  +FDE+P+               
Sbjct: 87  GRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPE--------------- 131

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                  R +F            +N MI   +  S       LF  M  ++V P+  TF+
Sbjct: 132 -------RTIFT-----------WNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFS 173

Query: 154 SVLSA-----LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
            VL A     +A  V E     Q+H  ++  G G  T V N LI +Y         S   
Sbjct: 174 GVLEACRGGSVAFDVVE-----QIHARIIYQGLGKSTIVCNPLIDLY---------SRNG 219

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKND-YLDAAREFLDGMSENVGVAWNALISGYV 267
            +  ARRVFD +  +D  SW  M++G  KN+  ++A R F D                  
Sbjct: 220 FVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCD------------------ 261

Query: 268 HRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327
                M +L I    + ++SV+SAC       +G+Q+H  +L+            V NAL
Sbjct: 262 -----MYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDT----YVCNAL 312

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWT 387
           V+LY+  G                L+S                A+ +F  M +R+ +++ 
Sbjct: 313 VSLYFHLGS---------------LIS----------------AEHIFSNMSQRDAVTYN 341

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447
            +I+GL+Q GYGE+ ++LF +M+L+G +P     A  + +C+  G L +G+QLHA     
Sbjct: 342 TLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKL 401

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
           G+ S+     AL+ +YA+C  +E A   F      + V WN M+ A G   +   +  ++
Sbjct: 402 GFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIF 461

Query: 508 EQMLKEGILPDRITFLTVLSACNHAGLVKEGRR-YFETMHGPYGIPPGEDHY--ARFIDL 564
            QM  E I+P++ T+ ++L  C   G ++ G + + + +   + +    + Y  +  ID+
Sbjct: 462 RQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQL----NAYVCSVLIDM 517

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
             + GK   A D++     K     W  ++AG
Sbjct: 518 YAKLGKLDTAWDILIRFAGKDVVS-WTTMIAG 548



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 109/219 (49%), Gaps = 11/219 (5%)

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSA-----YVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           G ++E R + +Q+ +    + NA LS      Y+  G +D A  +F+ M ER + +W  M
Sbjct: 82  GSLDEGRKLHSQILKLGFDN-NACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKM 140

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC-AGLGALENGRQLHAQLVHSG 448
           I  LA      +   LF +M  E   P +  F+G + +C  G  A +   Q+HA++++ G
Sbjct: 141 IKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQG 200

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
              S    N LI +Y+R G V+ A  VF+ +   D  SW AMI+ L ++     AI L+ 
Sbjct: 201 LGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFC 260

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
            M   GI+P    F +VLSAC     ++ G    E +HG
Sbjct: 261 DMYVLGIMPTPYAFSSVLSACKKIESLEIG----EQLHG 295



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 140/333 (42%), Gaps = 73/333 (21%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +HA    SGF                                 D+  +  L+  YS 
Sbjct: 593 GQQIHAQACVSGFS-------------------------------SDLPFQNALVTLYSK 621

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
             N++ A   F +T  +  D + +NA+++ +  + N   A+ +F  M R+ +  +NFTF 
Sbjct: 622 CGNIEEAYLAFEQT--EAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFG 679

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           S + A A      KQ  Q+H  + K+G    T V NA+IS+Y KC S         +  A
Sbjct: 680 SAVKA-ASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGS---------ISDA 729

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           ++ F E+  ++E+SW  M+  Y K+ +   A +  D                      +M
Sbjct: 730 KKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFD----------------------QM 767

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE--AKPTPEFSLPVNNALVTLY 331
           +   ++ +  T   V+SAC++ GL   G +     + TE    P PE  + V    V + 
Sbjct: 768 IHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFES-MNTEYGLAPKPEHYVCV----VDML 822

Query: 332 WKCGKVNEARDIFNQMP-ERDLVSWNAILSAYV 363
            + G ++ A+D   +MP E D + W  +LSA V
Sbjct: 823 TRAGLLSRAKDFILEMPIEPDALVWRTLLSACV 855



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 7/168 (4%)

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
           G+L+ GR+LH+Q++  G+D++      L+  Y   G ++ A  VF+ MP     +WN MI
Sbjct: 82  GSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMI 141

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY-- 549
             L       +   L+ +M+ E + P+  TF  VL AC    +  +     E +H     
Sbjct: 142 KELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFD---VVEQIHARIIY 198

Query: 550 -GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
            G+          IDL  R G    A+ V D L  K  +  W A+++G
Sbjct: 199 QGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSS-WVAMISG 245


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/626 (38%), Positives = 368/626 (58%), Gaps = 35/626 (5%)

Query: 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS 227
           Q  Q+H  ++++G    + VL  LI +  K V  P  S   L      VF ++   +   
Sbjct: 57  QIKQVHAHIIRNGLSQCSYVLTKLIRMLTK-VDVPMGSYPLL------VFGQVNYPNPFL 109

Query: 228 WTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTS 287
           WT M+ GY     L  +  F   M  + GV       G V               FT+++
Sbjct: 110 WTAMIRGYALQGLLSESTNFYTRMRRD-GV-------GPV--------------SFTFSA 147

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           +  AC  +    LGKQVHA  +      +    L V N+++ LY KCG +  AR +F++M
Sbjct: 148 LFKACGAALNMDLGKQVHAQTILIGGFAS---DLYVGNSMIDLYVKCGFLGCARKVFDEM 204

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
            ERD+VSW  ++ AY   G ++ A  LF+ +  +++++WT M++G AQNG  +E L+ F 
Sbjct: 205 SERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQ 264

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS--LSAGNALITMYAR 465
           +M+  G +  +   AG I++CA LGA+++   +      SG+  S  +  G+ALI MY++
Sbjct: 265 KMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSK 324

Query: 466 CGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTV 525
           CG  + A  VF  M   +  S+++MI     HG    A++L+  MLK  I P+++TF+ +
Sbjct: 325 CGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGI 384

Query: 526 LSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP 585
           LSAC+HAGLV++GR+ F  M   +G+ P  DHYA  +DLL RAG   EA D++ ++P +P
Sbjct: 385 LSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEP 444

Query: 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645
           +  +W ALL  CRIHGN D+   AA +LF+L P+  G Y+LLSN+YA+ GRW++ +++RK
Sbjct: 445 NGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRK 504

Query: 646 LMRDRGVKKEPGCSWIEVDN-KVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTK 704
           ++R++G KK PGCSW E  N ++H F   DT HP +  + + L+QL+  +R  GY P+  
Sbjct: 505 VIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLG 564

Query: 705 FVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVV 764
              +D+  D+KE  L +HSEKLA+A+GL+    G T++++KN+RIC DCHN     S++ 
Sbjct: 565 SAPYDLTDDEKERILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEIT 624

Query: 765 GREIVVRDGKRFHHFRDGKCSCGDYW 790
           GREI+VRD  RFHHF +G CSCG++W
Sbjct: 625 GREIIVRDNMRFHHFHNGTCSCGNFW 650



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 131/486 (26%), Positives = 208/486 (42%), Gaps = 98/486 (20%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLV--YARTLFDEIPQPDIVARTTLIA 89
           S  + VHAH+I +G     +++ +LI +  K    +  Y   +F ++  P          
Sbjct: 56  SQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYP---------- 105

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
                                  +   + AMI  Y+       +   +  MRRD V P +
Sbjct: 106 -----------------------NPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVS 142

Query: 150 FTFTSVLSAL--ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSR 207
           FTF+++  A   AL ++  KQ      T++  G      V N++I +YVKC         
Sbjct: 143 FTFSALFKACGAALNMDLGKQVHAQ--TILIGGFASDLYVGNSMIDLYVKC--------- 191

Query: 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV 267
             +G AR+VFDEM ERD +SWT ++  Y K   +++A    D +     VAW A+++GY 
Sbjct: 192 GFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYA 251

Query: 268 HRE---------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT-- 316
                        KM  + ++ DE T   VISACA     +LG   HA  +R  A+ +  
Sbjct: 252 QNGRPKEALEYFQKMQDVGMETDEVTLAGVISACA-----QLGAVKHANWIRDIAERSGF 306

Query: 317 -PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
            P  ++ V +AL+ +Y KCG  +EA  +F  M ER++ S+++                  
Sbjct: 307 GPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSS------------------ 348

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
                        MI G A +G     L+LF  M     +P    F G +++C+  G +E
Sbjct: 349 -------------MILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVE 395

Query: 436 NGRQLHAQLVH-SGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAA 493
            GRQL A++    G   S      ++ +  R G +E A  +  TMP   +   W A++ A
Sbjct: 396 QGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGA 455

Query: 494 LGQHGN 499
              HGN
Sbjct: 456 CRIHGN 461



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 186/393 (47%), Gaps = 50/393 (12%)

Query: 33  LARSVHAHMI-SSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           L + VHA  I   GF    ++ N +ID+Y K   L  AR +FDE+ + D+V+ T LI AY
Sbjct: 160 LGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAY 219

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
           +   +++ A  +F+  P K  D V + AM+T Y+ N     A+E F+ M+   ++ D  T
Sbjct: 220 AKYGDMESASGLFDDLPSK--DMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVT 277

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL--NALISVYVKCVSSPFVSSRSL 209
              V+SA A +    K    +     +SG G   +V+  +ALI +Y KC  SP       
Sbjct: 278 LAGVISACAQL-GAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKC-GSP------- 328

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
              A +VF+ M ER+  S+++M+ GY  +    +A +                       
Sbjct: 329 -DEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFH-------------------- 367

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR-TEAKPTPEFSLPVNNALV 328
              ML   I+ ++ T+  ++SAC+++GL   G+Q+ A + +     P+P+        +V
Sbjct: 368 --DMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYA----CMV 421

Query: 329 TLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLID----EAKSLFEAMRERNL 383
            L  + G + EA D+   MP E +   W A+L A    G  D     A  LF+   E N 
Sbjct: 422 DLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKL--EPNG 479

Query: 384 LSWTVMISGL-AQNGYGEEGLKLFSQMRLEGFK 415
           +   +++S + A  G  EE  KL   +R +GFK
Sbjct: 480 IGNYILLSNIYASAGRWEEVSKLRKVIREKGFK 512


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 268/770 (34%), Positives = 416/770 (54%), Gaps = 92/770 (11%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLK---LVYARTLFDEIPQPDIVARTTLIAAY 91
           R +HA MI +G     + +++L++    S     L YA ++FD I +P ++         
Sbjct: 19  RIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXLL--------- 69

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                                    +N M   ++ +S+  +A++L+  M    + P+++T
Sbjct: 70  ------------------------IWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYT 105

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           F  +L + A      K+  Q+H  V+K G  L   +  +LIS+YV+            + 
Sbjct: 106 FPFLLKSCAK-SXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQ---------NGRLE 155

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR-- 269
            A++V D+   RD +S+T ++TGY     +++A +  D +     V+WNA ISGY     
Sbjct: 156 DAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGN 215

Query: 270 -----EL--KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
                EL  KM+   ++ DE T  +V+SACA SG   LG+QVH+++           +L 
Sbjct: 216 YKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWI----NDHGFGXNLK 271

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
           + NAL+ LY KCG+                               ++ A  LF+ +  ++
Sbjct: 272 IVNALIDLYSKCGE-------------------------------LETACGLFQGLSNKD 300

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
           ++SW  +I G       +E L LF  M   G KP D      +++CA LGA++ GR +H 
Sbjct: 301 VISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHV 360

Query: 443 QLVH--SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
            +     G  ++ S   +LI MYA+CG +EAA  VF++M N    SWNAMI     HG  
Sbjct: 361 YIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRA 420

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
             A +++ +M K GI PD ITF+ +LSAC+H+G++  GR  F +M   Y + P  +HY  
Sbjct: 421 NAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGC 480

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
            IDL   +G F EA+ +I+++  +P   IW +LL  C++HGN++LG   A+ L ++ P +
Sbjct: 481 MIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPEN 540

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEA 680
            G+YVLLSN+YA   RW++ A+ R L+ D+G+KK PGCS IE+D+ VH F++ D  HP  
Sbjct: 541 PGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRN 600

Query: 681 QAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT 740
           + +Y  LE++ + + + G+VPDT  VL +ME + KE AL  HSEKLA+AFGL+    G  
Sbjct: 601 REIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTK 660

Query: 741 VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           + ++KNLR+C +CH A K +SK+  REI+ RD  RFHHFRDG+CSC DYW
Sbjct: 661 LTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGECSCNDYW 710



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 146/343 (42%), Gaps = 69/343 (20%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R VH+ +   GF     I+N LID+Y K  +L  A  LF  +   D+++  TLI  Y+
Sbjct: 253 LGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYT 312

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
              ++ L +E                              A+ LF+DM R   KP++ T 
Sbjct: 313 ---HMNLYKE------------------------------ALLLFQDMLRSGEKPNDVTM 339

Query: 153 TSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
            S+LSA A L   +  + + ++      G    +S+  +LI +Y KC           + 
Sbjct: 340 LSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGD---------IE 390

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
           AA++VFD M  R   SW  M+ G+  +   +AA +    M +N                 
Sbjct: 391 AAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKN----------------- 433

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                 I+ D+ T+  ++SAC++SG+  LG+ +   + R + K  P+  L     ++ L 
Sbjct: 434 -----GIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTR-DYKLMPK--LEHYGCMIDLX 485

Query: 332 WKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKS 373
              G   EA  + N M  E D V W ++L A    G ++  +S
Sbjct: 486 GHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGES 528


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 249/755 (32%), Positives = 397/755 (52%), Gaps = 104/755 (13%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +H+ +I  G++  E I   L+D+Y K    + A  +F  I +PDIV           
Sbjct: 333 GQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVV---------- 382

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                                  ++A+IT          +I+LF  MR  D  P+ +T  
Sbjct: 383 -----------------------WSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTIC 419

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK--CVSSPFVSSRSLMG 211
           S+LSA A      +    +H  V K G     +V NAL+++Y+K  CV            
Sbjct: 420 SLLSA-ATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHD---------- 468

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
              ++++ M +RD +SW   ++G       D            + + ++ L  G++    
Sbjct: 469 -GTKLYESMVDRDLISWNAYLSGLHDCGMYDRP----------LTIFYHMLEEGFIP--- 514

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                    + +T+ S++ +C+       G+QVHA++++                     
Sbjct: 515 ---------NMYTFISILGSCSCLFDVHYGRQVHAHIIK--------------------- 544

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
                        NQ+ + + V   A++  Y     +++A   F  +  R+L +WTV+I+
Sbjct: 545 -------------NQLDDNNFVC-TALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIIT 590

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
             AQ   GE+ L  F QM+ EG KP ++  AG ++ C+ L +LE G+QLH+ +  SG+ S
Sbjct: 591 NYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVS 650

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
            +  G+AL+ MYA+CG +E A  +F  +   D+++WN +I    Q+G G +A+  +  ML
Sbjct: 651 DMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMML 710

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571
            EGI PD +TF  +LSAC+H GLV+EG+ +F +M+  +GI P  DH A  +D+L R GKF
Sbjct: 711 DEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKF 770

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631
            E +D I  +    +A IWE +L   ++H N+ LG +AA +LF+L P    +Y+LLSN++
Sbjct: 771 DELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIF 830

Query: 632 ANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLV 691
           A  GRWDD  RVR LM  +GVKKEPGCSW+E + +VH F+  D +HP+ Q ++  L++L 
Sbjct: 831 ATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELD 890

Query: 692 LEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICG 751
            E+  + YVP T++VLH++   +K+  L  HSE+LA+ F L+       +R+ KNLRIC 
Sbjct: 891 RELASIQYVPKTEYVLHNVGETEKKENLRFHSERLALGFALISTSSEKKIRIFKNLRICR 950

Query: 752 DCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSC 786
           DCH+  K +S +  +EIVVRD +RFHHF++G CSC
Sbjct: 951 DCHDVMKHISSITNQEIVVRDVRRFHHFKNGACSC 985



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 132/531 (24%), Positives = 236/531 (44%), Gaps = 114/531 (21%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y+S L+ C  +  +   +A+++H  ++     P  H+   L+++Y K     YAR +  +
Sbjct: 115 YSSMLRECASKRSL--GVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAK 172

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P  D+V+ T LI          L  E F                          + +I 
Sbjct: 173 MPDRDVVSWTALIQG--------LVAEGF-------------------------ANDSIY 199

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM------QMHCTVVKSGTGLFTSVLN 189
           LF++M+ + + P+ FT  + L A +L       CM      QMH    K G  L   V +
Sbjct: 200 LFQEMQNEGIMPNEFTLATGLKACSL-------CMALDLGKQMHAQAFKLGLLLDLFVGS 252

Query: 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD 249
           AL+ +Y KC           +  A ++F  MPE+++++W  ++ GY              
Sbjct: 253 ALVDLYAKC---------GEIELASKMFIGMPEQNDVTWNVLLNGY-------------- 289

Query: 250 GMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
                   A    ++G +     M+ L ++ +EFT T+V+  CANS   + G+ +H+ ++
Sbjct: 290 --------AQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLII 341

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLID 369
           +   +   EF   +   LV +Y KCG   +A  +F  + + D+V W+A+++         
Sbjct: 342 KCGYEGN-EF---IGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITC-------- 389

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
                                  L Q G  EE +KLF  MRL    P  Y     +++  
Sbjct: 390 -----------------------LDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAAT 426

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
             G L+ G+ +HA +   G+++ ++  NAL+TMY + G V     ++ +M + D +SWNA
Sbjct: 427 NTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNA 486

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
            ++ L   G   R + ++  ML+EG +P+  TF+++L +C+    V  GR+
Sbjct: 487 YLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQ 537



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 152/333 (45%), Gaps = 41/333 (12%)

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           Y+S++  CA+     + K +H  +++    P     +    +LV +Y KC     AR + 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWV----SLVNVYAKCRYSAYARLVL 170

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
            +MP+R                               +++SWT +I GL   G+  + + 
Sbjct: 171 AKMPDR-------------------------------DVVSWTALIQGLVAEGFANDSIY 199

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           LF +M+ EG  P ++  A  + +C+   AL+ G+Q+HAQ    G    L  G+AL+ +YA
Sbjct: 200 LFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYA 259

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           +CG +E A+ +F  MP  + V+WN ++    Q G+    ++L+  M++  +  +  T  T
Sbjct: 260 KCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTT 319

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584
           VL  C ++  +K+G +   ++    G    E      +D+  + G   +A  V  ++  K
Sbjct: 320 VLKGCANSKNLKQG-QVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIK-K 377

Query: 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           P   +W AL+      G  +  I    +LF LM
Sbjct: 378 PDIVVWSALITCLDQQGQSEESI----KLFHLM 406



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 104/491 (21%), Positives = 184/491 (37%), Gaps = 102/491 (20%)

Query: 11  TLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYAR 70
           TL N+Y     L    N       +S+HA +   GF+    + N L+ +Y K+       
Sbjct: 411 TLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKN------- 463

Query: 71  TLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNG 130
                                   D  KL   M +      RD + +NA ++        
Sbjct: 464 --------------------GCVHDGTKLYESMVD------RDLISWNAYLSGLHDCGMY 497

Query: 131 HAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNA 190
              + +F  M  +   P+ +TF S+L + + + +      Q+H  ++K+       V  A
Sbjct: 498 DRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYG-RQVHAHIIKNQLDDNNFVCTA 556

Query: 191 LISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDG 250
           LI +Y KC+          +  A   F+ +  RD  +WT ++T Y + +  + A  +   
Sbjct: 557 LIDMYAKCM---------YLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQ 607

Query: 251 MSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
           M +  GV  N                     EFT    +S C++      G+Q+H+ + +
Sbjct: 608 MQQE-GVKPN---------------------EFTLAGCLSGCSSLASLEGGQQLHSMVFK 645

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
           +         + V +ALV +Y KCG + EA  +F  +  RD ++WN I            
Sbjct: 646 SGHVS----DMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTI------------ 689

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
                              I G AQNG G + L  F  M  EG  P    F G +++C+ 
Sbjct: 690 -------------------ICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSH 730

Query: 431 LGALENGRQ-LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWN 488
            G +E G++  ++     G   ++     ++ +  R G  +        M  + +++ W 
Sbjct: 731 QGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWE 790

Query: 489 AMIAALGQHGN 499
            ++ A   H N
Sbjct: 791 TVLGASKMHNN 801


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 271/766 (35%), Positives = 414/766 (54%), Gaps = 92/766 (12%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLK---LVYARTLFDEIPQPDIVARTTLIAAY 91
           R +HA MI +G     + +++LI+    S     L YA ++FD I +P+++         
Sbjct: 19  RIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLL--------- 69

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                                    +N M   ++ +S+  +A+ L+  M    + P+++T
Sbjct: 70  ------------------------IWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYT 105

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           F  +L A A   +  ++  Q+H  V+K G  L   V  +LI++YVK              
Sbjct: 106 FPFLLKACAK-SKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVK---------NGRXE 155

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR-- 269
            AR+VFD+   RD +S+T ++ GY  N Y+ +A++  D +     V+WNALISGY     
Sbjct: 156 DARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGN 215

Query: 270 -----EL--KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
                EL  +M+   ++ DE T  +V+SACA S    LG+QVH+++           +L 
Sbjct: 216 YKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGS----NLK 271

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
           + NAL+ LY KC                               G ++ A  LFE +  ++
Sbjct: 272 IVNALIDLYIKC-------------------------------GEVETASGLFEGLSYKD 300

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
           ++SW  +I G       +E L LF +M   G  P +      + +CA LGA++ GR +H 
Sbjct: 301 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHV 360

Query: 443 QLVH--SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
            +     G  +  S   +LI MYA+CG +EAA  VF++M N    SWNAMI     HG  
Sbjct: 361 YIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRA 420

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
             A +++ +M K+GI PD ITF+ +LSAC+H+G++  GR  F +M   Y I P  +HY  
Sbjct: 421 NPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGC 480

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
            IDLL  +G F EA+++I+S+   P   IW +LL  C++HGN++LG   A+ L ++ P +
Sbjct: 481 MIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKN 540

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEA 680
           +G+YVLLSN+YA  GRW++ A+ R L+ D+G+KK PGCS IE+D+ VH F++ D  HP  
Sbjct: 541 SGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRN 600

Query: 681 QAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT 740
           + +Y  LE++ + + + G+VPDT  VL +ME + KE AL  HSEKLA+AFGL+    G  
Sbjct: 601 REIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTK 660

Query: 741 VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSC 786
           + ++KNLR+C +CH A K +SK+  REI+ RD  RFHHF DG CSC
Sbjct: 661 LTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFXDGVCSC 706



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 162/388 (41%), Gaps = 72/388 (18%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R VH+ +   GF     I+N LID+Y K  ++  A  LF+ +   D+++  TLI  Y+
Sbjct: 253 LGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYT 312

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
              ++ L +E                              A+ LF++M R    P+  T 
Sbjct: 313 ---HMNLYKE------------------------------ALLLFQEMLRSGESPNEVTM 339

Query: 153 TSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
            S+L A A L   +  + + ++      G    +S+  +LI +Y KC           + 
Sbjct: 340 LSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGD---------IE 390

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
           AA++VFD M  R   SW  M+ G+  +   + A +    M ++                 
Sbjct: 391 AAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKD----------------- 433

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                 I+ D+ T+  ++SAC++SG+  LG+ +   +   + K TP+  L     ++ L 
Sbjct: 434 -----GIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTE-DYKITPK--LEHYGCMIDLL 485

Query: 332 WKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFE---AMRERNLLSWT 387
              G   EA ++ N M  + D V W ++L A    G ++  +S  +    +  +N  S+ 
Sbjct: 486 GHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYV 545

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           ++ +  A  G   E  K  + +  +G K
Sbjct: 546 LLSNIYATAGRWNEVAKRRALLNDKGMK 573


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 242/655 (36%), Positives = 375/655 (57%), Gaps = 78/655 (11%)

Query: 184 FTSVLNALISVYVKCVSSPFVSSRSL--------MGAARRVFDEMPERDELSWTTMMTGY 235
           F   L+AL+ V  K V S F+S+R +        +  +R  FD++P++D  +W +M++ Y
Sbjct: 34  FAKCLHALLVVAGK-VQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAY 92

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
           V N +            E +G  +  L           L+  I+ D +T+  V+ AC   
Sbjct: 93  VHNGHF----------HEAIGCFYQLL-----------LVSEIRPDFYTFPPVLKAC--- 128

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
           G    G+++H +      K   ++++ V  +L+ +Y + G    AR +F+ MP RD+ SW
Sbjct: 129 GTLVDGRKIHCWAF----KLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSW 184

Query: 356 NAILSA---------------------------------------YVSAGLIDEAKSLFE 376
           NA++S                                        Y   GL+D A  +FE
Sbjct: 185 NAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFE 244

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR-LEGFKPCDYAFAGAITSCAGLGALE 435
            +  ++++SW  +I+G AQNG   E ++++  M   +   P    +   + + A +GAL+
Sbjct: 245 IIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQ 304

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            G ++H +++ +     +     LI +Y +CG +  A  +F  +P   SV+WNA+I+  G
Sbjct: 305 QGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHG 364

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
            HG+  + ++L+ +ML EG+ PD +TF+++LSAC+H+G V+EG+  F  M   YGI P  
Sbjct: 365 IHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-EYGIKPSL 423

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
            HY   +DLL RAG    A D I  +P +P A IW ALL  CRIHGNI+LG  A+++LF+
Sbjct: 424 KHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFE 483

Query: 616 LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
           +   + G YVLLSN+YAN+G+W+   +VR L R+RG+KK PG S IEV+ KV VF   + 
Sbjct: 484 VDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQ 543

Query: 676 AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKL 735
           +HP+ + +Y+ L  L  +M+ LGY+PD  FVL D+E D+KE+ L++HSE+LA+AFG++  
Sbjct: 544 SHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIIST 603

Query: 736 PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           P  + +R+ KNLR+CGDCHNA KF+S++  REIVVRD  RFHHF+DG CSCGDYW
Sbjct: 604 PPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 658



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 132/522 (25%), Positives = 213/522 (40%), Gaps = 136/522 (26%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
           +  A+ +HA ++ +G      I  RL+++Y     +  +R  FD+IPQ D+ A       
Sbjct: 32  TPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYA------- 84

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR-DDVKPDN 149
                                     +N+MI+AY HN + H AI  F  +    +++PD 
Sbjct: 85  --------------------------WNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDF 118

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           +TF  VL A   +V+  K    +HC   K G      V  +LI +Y         S    
Sbjct: 119 YTFPPVLKACGTLVDGRK----IHCWAFKLGFQWNVFVAASLIHMY---------SRFGF 165

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKN-------DYLDAAREFLDGMSENV------- 255
            G AR +FD+MP RD  SW  M++G ++N       D LD  R  L+G+  N        
Sbjct: 166 TGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMR--LEGIKMNFVTVVSIL 223

Query: 256 ---------------------------GVAWNALISGYVHREL--------KML--MLRI 278
                                       ++WN LI+GY    L        KM+     I
Sbjct: 224 PVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEI 283

Query: 279 QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
             ++ T+ S++ A A+ G  + G ++H  +++T         + V   L+ +Y KCG++ 
Sbjct: 284 IPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNL----HLDVFVATCLIDVYGKCGRLV 339

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGY 398
           +A  +F Q+P+   V+WNAI+S +                                 +G+
Sbjct: 340 DAMSLFYQVPQESSVTWNAIISCH-------------------------------GIHGH 368

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
            E+ LKLF +M  EG KP    F   +++C+  G +E G+     +   G   SL     
Sbjct: 369 AEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGC 428

Query: 459 LITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
           ++ +  R G +E A      MP   D+  W A++ A   HGN
Sbjct: 429 MVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGN 470



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 102/430 (23%), Positives = 173/430 (40%), Gaps = 90/430 (20%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R +H      GF+    +   LI +Y +      AR+LFD++P  D+ +   +I+    
Sbjct: 134 GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQ 193

Query: 94  SDNVKLAREMFNKTPLK-------------------------------------MRDTVF 116
           + N   A ++ ++  L+                                     ++D + 
Sbjct: 194 NGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVIS 253

Query: 117 YNAMITAYSHNSNGHAAIELFRDMRR-DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
           +N +IT Y+ N     AIE+++ M    ++ P+  T+ S+L A A  V   +Q M++H  
Sbjct: 254 WNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAH-VGALQQGMKIHGR 312

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
           V+K+   L   V   LI VY KC     V + SL       F ++P+   ++W  +++ +
Sbjct: 313 VIKTNLHLDVFVATCLIDVYGKC--GRLVDAMSL-------FYQVPQESSVTWNAIISCH 363

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK----MLMLRIQLDEFTYTSVISA 291
                                      I G+  + LK    ML   ++ D  T+ S++SA
Sbjct: 364 G--------------------------IHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSA 397

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ER 350
           C++SG    GK     +     KP    SL     +V L  + G +  A D    MP + 
Sbjct: 398 CSHSGFVEEGKWCFRLMQEYGIKP----SLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQP 453

Query: 351 DLVSWNAILSAYVSAGLIDEAK----SLFEAMRERNLLSWTVMISGLAQNGYGEEGL-KL 405
           D   W A+L A    G I+  K     LFE   +   + + V++S +  N    EG+ K+
Sbjct: 454 DASIWGALLGACRIHGNIELGKFASDRLFEV--DSKNVGYYVLLSNIYANVGKWEGVDKV 511

Query: 406 FSQMRLEGFK 415
            S  R  G K
Sbjct: 512 RSLARERGLK 521


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/626 (37%), Positives = 368/626 (58%), Gaps = 68/626 (10%)

Query: 167  KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDEL 226
            ++  ++H  ++K+       +   LI +Y KC           +G ARRV DEMPER+ +
Sbjct: 494  REGQRVHAHMIKTCYEPPVYLRTRLIVLYNKC---------RCLGDARRVLDEMPERNVV 544

Query: 227  SWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYT 286
            SWT M++GY +  Y   A                      +H  ++MLM     +EFT+ 
Sbjct: 545  SWTAMISGYSQRGYASEA----------------------LHLFVEMLMSGTAPNEFTFA 582

Query: 287  SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
            +V+++C +S  F+LG+Q+H+ +++T    + E  + V ++L+ +Y K GK+ EAR +F+ 
Sbjct: 583  TVLTSCTSSSGFQLGRQIHSLVIKT----SFESHIFVGSSLLDMYAKAGKICEARRVFDG 638

Query: 347  MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
            +PERD+VS  AI+S Y   GL +EA                               L LF
Sbjct: 639  LPERDVVSCTAIISGYAQLGLDEEA-------------------------------LDLF 667

Query: 407  SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
             +++ EG +     +A  +T+ +GL AL++GRQ+H+ ++ +     +   N+LI MY++C
Sbjct: 668  RRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKC 727

Query: 467  GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG-ILPDRITFLTV 525
            G +  +  +F++MP    +SWNAM+    +HG G  A+EL++ M +E  + PD +TFL V
Sbjct: 728  GSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAV 787

Query: 526  LSACNHAGLVKEGRR-YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584
            LS C+H G+   G   ++E ++   G  P  +HY   +DL  RAG+  EA + I  +PF+
Sbjct: 788  LSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFE 847

Query: 585  PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVR 644
            P+A IW +LL  CR+H N+ +G   A +L ++   +AG YV+LSN+YA+ GRWDD   VR
Sbjct: 848  PTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVR 907

Query: 645  KLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTK 704
            +LM+++ V KEPG SWIE+D  +H F   D +HP  + V+  + +L +++++ GYVP+  
Sbjct: 908  ELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELS 967

Query: 705  FVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVV 764
             VL+D++ +QKE  L  HSEKLA+AFGL+  PGG  VR++KNLRIC DCHN  KF+S+V 
Sbjct: 968  CVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKFLSRVY 1027

Query: 765  GREIVVRDGKRFHHFRDGKCSCGDYW 790
            GRE+ +RD  RFHH   G CSCGDYW
Sbjct: 1028 GREVSLRDKNRFHHIVGGTCSCGDYW 1053



 Score =  149 bits (375), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 132/492 (26%), Positives = 216/492 (43%), Gaps = 114/492 (23%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y S L  C  +  I     + VHAHMI + ++P  ++  RLI +Y K       R L D 
Sbjct: 480 YDSVLTECISQTAIRE--GQRVHAHMIKTCYEPPVYLRTRLIVLYNK------CRCLGD- 530

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
                                   AR + ++ P   R+ V + AMI+ YS       A+ 
Sbjct: 531 ------------------------ARRVLDEMP--ERNVVSWTAMISGYSQRGYASEALH 564

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LF +M      P+ FTF +VL++        +   Q+H  V+K+       V ++L+ +Y
Sbjct: 565 LFVEMLMSGTAPNEFTFATVLTSCT-SSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMY 623

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            K            +  ARRVFD +PERD +S T +++GY +   L    E LD      
Sbjct: 624 AKA---------GKICEARRVFDGLPERDVVSCTAIISGYAQ---LGLDEEALD------ 665

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                      + R L+   +R   +  TY SV++A +       G+QVH+++LR +   
Sbjct: 666 -----------LFRRLQREGMRS--NYVTYASVLTALSGLAALDHGRQVHSHVLRAKLP- 711

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
              F + + N+L+ +Y KCG +  +R IF+ MPER ++SWNA+L  Y   GL  EA  LF
Sbjct: 712 ---FYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELF 768

Query: 376 EAMRERNL-----LSWTVMISGLAQNGYGEEGLKLFSQM--RLEGFKPCDYAFAGAITSC 428
           + M+E N      +++  ++SG +  G  + GL++F +M  + +GF+P            
Sbjct: 769 KLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEP------------ 816

Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-W 487
                         ++ H G          ++ ++ R G VE A      MP   + + W
Sbjct: 817 --------------EIEHYG---------CVVDLFGRAGRVEEAFEFIKKMPFEPTAAIW 853

Query: 488 NAMIAALGQHGN 499
            +++ A   H N
Sbjct: 854 GSLLGACRVHQN 865



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 7/178 (3%)

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467
           +M ++G +     +   +T C    A+  G+++HA ++ + Y+  +     LI +Y +C 
Sbjct: 467 EMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCR 526

Query: 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
            +  A  V + MP  + VSW AMI+   Q G  + A+ L+ +ML  G  P+  TF TVL+
Sbjct: 527 CLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLT 586

Query: 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHY---ARFIDLLCRAGKFSEAKDVIDSLP 582
           +C  +   + GR+    +H        E H    +  +D+  +AGK  EA+ V D LP
Sbjct: 587 SCTSSSGFQLGRQ----IHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLP 640


>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
 gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
          Length = 770

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 261/712 (36%), Positives = 393/712 (55%), Gaps = 59/712 (8%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+   T+L+ AY      + AR +F+  P   R+ V + A++T Y+ NS     +E+F +
Sbjct: 112 DMFVATSLVNAYMRCSAARDARRLFDGMP--ERNVVTWTALVTGYTLNSQPALGLEVFVE 169

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M      P ++T  + L+A  L   +     Q+H   +K G    TS+ N+L S+Y K  
Sbjct: 170 MLEMGRYPSHYTLGATLNA-CLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLG 228

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
           S         + +A R F  +PE++ ++WTTM++   +++             E V +  
Sbjct: 229 S---------LDSALRAFWRIPEKNVITWTTMISACAEDE-------------ECVELGM 266

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
           +  I         MLM  +  +EFT TSV+S C       LGKQV A+  +       E 
Sbjct: 267 SLFID--------MLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGC----ET 314

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
           +LPV N+ + LY + G+ +EA  +F QM +  +++WNA++S Y  A ++D AK   +A R
Sbjct: 315 NLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGY--AQIMDSAKDDLQA-R 371

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
            R                 G + L +F  ++    KP  + F+  ++ C+ + ALE G Q
Sbjct: 372 SR-----------------GFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQ 414

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           +HAQ + SG+ S +   +AL+ MY +CG ++ AN  F  MP    V+W +MI+   QHG 
Sbjct: 415 IHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQ 474

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA 559
              AI+L+E+M   G+ P+ ITF+++LSAC++AGLV+E   YF+ M   Y I P  DHY 
Sbjct: 475 PQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYG 534

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
             ID+  R G+  +A   I    F+P+  IW +L+AGCR HGN++L   AA++L +L P 
Sbjct: 535 CMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPK 594

Query: 620 HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPE 679
              TY+LL NMY +  RW D ARVRKLM+   V      SWI + +KV+ F  +D  HP+
Sbjct: 595 GIETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQ 654

Query: 680 AQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYA--LSTHSEKLAVAFGLMKLPG 737
           A  +Y+ LE L+ + + +GY P     L D E D+K  A  L  HSE+LAVA GL++ P 
Sbjct: 655 ATELYQLLENLLEKAKAIGYEPYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQTPP 714

Query: 738 GATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
           GATVRV KN+ +C DCH++ K  S +  REI+VRD KR H F+DG+CSCGD+
Sbjct: 715 GATVRVTKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGRCSCGDF 766



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 103/455 (22%), Positives = 194/455 (42%), Gaps = 82/455 (18%)

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H  + K+G      V  +L++ Y++C         S    ARR+FD MPER+ ++WT +
Sbjct: 100 VHGHMAKTGASADMFVATSLVNAYMRC---------SAARDARRLFDGMPERNVVTWTAL 150

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           +TGY  N       E                        ++ML +      +T  + ++A
Sbjct: 151 VTGYTLNSQPALGLEVF----------------------VEMLEMGRYPSHYTLGATLNA 188

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           C  S    LGKQVH Y ++  A+        + N+L +LY K G ++ A   F ++PE++
Sbjct: 189 CLASCDVDLGKQVHGYAIKYGAESITS----MGNSLCSLYAKLGSLDSALRAFWRIPEKN 244

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEE-GLKLFSQMR 410
           +++                               WT MIS  A++    E G+ LF  M 
Sbjct: 245 VIT-------------------------------WTTMISACAEDEECVELGMSLFIDML 273

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
           ++G  P ++     ++ C     L  G+Q+ A     G +++L   N+ + +Y R G  +
Sbjct: 274 MDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETD 333

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQ-----------HGNGARAIELYEQMLKEGILPDR 519
            A  +F  M +   ++WNAMI+   Q              G +A+ ++  + +  + PD 
Sbjct: 334 EAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDL 393

Query: 520 ITFLTVLSACNHAGLVKEGRR-YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVI 578
            TF ++LS C+    +++G + + +T+    G        +  +++  + G   +A    
Sbjct: 394 FTFSSILSVCSAMMALEQGEQIHAQTIKS--GFLSDVVVNSALVNMYNKCGCIQDANKAF 451

Query: 579 DSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
             +P + +   W ++++G   HG     IQ  E++
Sbjct: 452 LEMPTR-TFVTWTSMISGYSQHGQPQEAIQLFEEM 485



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 141/299 (47%), Gaps = 11/299 (3%)

Query: 328 VTLYWKC---GKVNEARDIFNQMPER----DLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           V L  +C   G +  AR +   M +     D+    ++++AY+      +A+ LF+ M E
Sbjct: 82  VPLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSAARDARRLFDGMPE 141

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
           RN+++WT +++G   N     GL++F +M   G  P  Y     + +C     ++ G+Q+
Sbjct: 142 RNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQV 201

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           H   +  G +S  S GN+L ++YA+ G +++A   F  +P  + ++W  MI+A  +    
Sbjct: 202 HGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEEC 261

Query: 501 AR-AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA 559
               + L+  ML +G++P+  T  +V+S C     +  G++  +      G         
Sbjct: 262 VELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQ-VQAFSFKIGCETNLPVKN 320

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG-CRIHGNIDLGIQAAEQLFQLM 617
             + L  R G+  EA  + + +    S   W A+++G  +I  +    +QA  + FQ +
Sbjct: 321 STMYLYLRKGETDEAMRLFEQME-DASIITWNAMISGYAQIMDSAKDDLQARSRGFQAL 378



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 154/350 (44%), Gaps = 53/350 (15%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTL----FDEIPQPDIVARTTLI 88
           L  S+   M+  G  P E  +  ++ +    L L   + +    F    + ++  + + +
Sbjct: 264 LGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTM 323

Query: 89  AAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSH-----------NSNGHAAIELF 137
             Y        A  +F +  ++    + +NAMI+ Y+             S G  A+ +F
Sbjct: 324 YLYLRKGETDEAMRLFEQ--MEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIF 381

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           RD++R  +KPD FTF+S+LS  + ++  E Q  Q+H   +KSG      V +AL+++Y K
Sbjct: 382 RDLKRSVMKPDLFTFSSILSVCSAMMALE-QGEQIHAQTIKSGFLSDVVVNSALVNMYNK 440

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C           +  A + F EMP R  ++WT+M++GY ++     A +  +        
Sbjct: 441 C---------GCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFE-------- 483

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                         +M +  ++ +E T+ S++SAC+ +GL    ++   Y    + +   
Sbjct: 484 --------------EMRLAGVRPNEITFVSLLSACSYAGLV---EEAEHYFDMMKKEYCI 526

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAG 366
           E  +     ++ ++ + G+V +A     +   E +   W+++++   S G
Sbjct: 527 EPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHG 576


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 238/623 (38%), Positives = 351/623 (56%), Gaps = 68/623 (10%)

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           + +AR+VFDE+PER+ +    M+  YV N +            E V V            
Sbjct: 90  VASARKVFDEIPERNVIIINVMIRSYVNNGFY----------GEGVKVFGT--------- 130

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
              M    ++ D +T+  V+ AC+ SG   +G+++H    +     T    L V N LV+
Sbjct: 131 ---MCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSST----LFVGNGLVS 183

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA------------------ 371
           +Y KCG ++EAR + ++M  RD+VSWN+++  Y      D+A                  
Sbjct: 184 MYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGT 243

Query: 372 -------------------KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
                              K +F  M +++L+SW VMI    +N    E ++L+S+M  +
Sbjct: 244 MASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEAD 303

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
           GF+P   +    + +C    AL  G+++H  +       +L   NALI MYA+CG +E A
Sbjct: 304 GFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKA 363

Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
             VF  M + D VSW AMI+A G  G G  A+ L+ ++   G++PD I F+T L+AC+HA
Sbjct: 364 RDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHA 423

Query: 533 GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592
           GL++EGR  F+ M   Y I P  +H A  +DLL RAGK  EA   I  +  +P+  +W A
Sbjct: 424 GLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGA 483

Query: 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           LL  CR+H + D+G+ AA++LFQL P  +G YVLLSN+YA  GRW++   +R +M+ +G+
Sbjct: 484 LLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGL 543

Query: 653 KKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMES 712
           KK PG S +EV+  +H FLV D +HP++  +Y+ L+ LV +M++LGYVPD++  LHD+E 
Sbjct: 544 KKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEE 603

Query: 713 DQKEYALSTHSEKLAVAFGLMKLP-----GGATVRVLKNLRICGDCHNAFKFMSKVVGRE 767
           + KE  L+ HSEKLA+ F LM           T+R+ KNLRICGDCH A K +S++  RE
Sbjct: 604 EDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSRE 663

Query: 768 IVVRDGKRFHHFRDGKCSCGDYW 790
           I++RD  RFH FR G CSCGDYW
Sbjct: 664 IIIRDTNRFHVFRFGVCSCGDYW 686



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 138/537 (25%), Positives = 237/537 (44%), Gaps = 112/537 (20%)

Query: 48  PREHI--INRLIDIY--CKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREM 103
           P+E +  + +++D Y   ++L+ V++R + +++     +    L+ AY++  +V  AR++
Sbjct: 38  PQETVFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLG-VKLMRAYASLKDVASARKV 96

Query: 104 FNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALAL-- 161
           F++ P   R+ +  N MI +Y +N      +++F  M   +V+PD++TF  VL A +   
Sbjct: 97  FDEIP--ERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSG 154

Query: 162 -IVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEM 220
            IV   K    +H +  K G      V N L+S+Y KC           +  AR V DEM
Sbjct: 155 TIVIGRK----IHGSATKVGLSSTLFVGNGLVSMYGKC---------GFLSEARLVLDEM 201

Query: 221 PERDELSWTTMMTGYVKNDYLDAAREFLDGM-----------------------SENVG- 256
             RD +SW +++ GY +N   D A E    M                       +ENV  
Sbjct: 202 SRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMY 261

Query: 257 -------------VAWNALISGYVHRELKM----LMLRIQLDEF-----TYTSVISACAN 294
                        V+WN +I  Y+   + +    L  R++ D F     + TSV+ AC +
Sbjct: 262 VKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGD 321

Query: 295 SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS 354
           +    LGK++H Y+ R +  P    +L + NAL+ +Y KCG + +ARD+F  M  RD+VS
Sbjct: 322 TSALSLGKKIHGYIERKKLIP----NLLLENALIDMYAKCGCLEKARDVFENMKSRDVVS 377

Query: 355 WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF 414
           W A++SAY                                 +G G + + LFS+++  G 
Sbjct: 378 WTAMISAY-------------------------------GFSGRGCDAVALFSKLQDSGL 406

Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLV-HSGYDSSLSAGNALITMYARCGVVEAAN 473
            P   AF   + +C+  G LE GR     +  H      L     ++ +  R G V+ A 
Sbjct: 407 VPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAY 466

Query: 474 CVFNTM---PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
                M   PN     W A++ A   H +    +   +++ +  + P++  +  +LS
Sbjct: 467 RFIQDMSMEPN--ERVWGALLGACRVHSDTDIGLLAADKLFQ--LAPEQSGYYVLLS 519



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 134/305 (43%), Gaps = 19/305 (6%)

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
           ++ AY S   +  A+ +F+ + ERN++   VMI     NG+  EG+K+F  M     +P 
Sbjct: 80  LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
            Y F   + +C+  G +  GR++H      G  S+L  GN L++MY +CG +  A  V +
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG---- 533
            M   D VSWN+++    Q+     A+E+  +M    I  D  T  ++L A ++      
Sbjct: 200 EMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 259

Query: 534 ------LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSA 587
                   K G++   + +   G+          ++L  R        D +      P+ 
Sbjct: 260 MYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPAC 319

Query: 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647
               AL  G +IHG I+          +L+P+      L+ +MYA  G  + A  V + M
Sbjct: 320 GDTSALSLGKKIHGYIERK--------KLIPNLLLENALI-DMYAKCGCLEKARDVFENM 370

Query: 648 RDRGV 652
           + R V
Sbjct: 371 KSRDV 375



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 86/190 (45%), Gaps = 9/190 (4%)

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           R +H++++      + S G  L+  YA    V +A  VF+ +P  + +  N MI +   +
Sbjct: 59  RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP---YGIPPG 554
           G     ++++  M    + PD  TF  VL AC+ +G +  GR+    +HG     G+   
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRK----IHGSATKVGLSST 174

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
                  + +  + G  SEA+ V+D +  +     W +L+ G   +   D  ++   ++ 
Sbjct: 175 LFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVS-WNSLVVGYAQNQRFDDALEVCREME 233

Query: 615 QL-MPHHAGT 623
            + + H AGT
Sbjct: 234 SVKISHDAGT 243



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 35/143 (24%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           SL + +H ++      P   + N LID+Y K   L  AR +F+ +   D+V+ T +I+AY
Sbjct: 326 SLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAY 385

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
             S                                   G  A+ LF  ++   + PD+  
Sbjct: 386 GFS---------------------------------GRGCDAVALFSKLQDSGLVPDSIA 412

Query: 152 FTSVLSAL--ALIVEEEKQCMQM 172
           F + L+A   A ++EE + C ++
Sbjct: 413 FVTTLAACSHAGLLEEGRSCFKL 435


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 257/692 (37%), Positives = 386/692 (55%), Gaps = 44/692 (6%)

Query: 11  TLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYAR 70
           T+++ +A  L  C  +  +++   R VHA +I SGF     I NRLID Y K   L   R
Sbjct: 17  TVSSPFAKLLDSC-IKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGR 75

Query: 71  TLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNG 130
            LFD++PQ ++    +++   +    +  A  +F   P   RD   +N+M++ ++ +   
Sbjct: 76  QLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMP--ERDQCTWNSMVSGFAQHDRC 133

Query: 131 HAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNA 190
             A+  F  M ++    + +TF S LSA + +  +  + +Q+H  + KS       + +A
Sbjct: 134 EEALYYFAMMHKEGFVLNEYTFASGLSACSGL-NDMNRGVQIHSLIAKSPCLSDVYIGSA 192

Query: 191 LISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDG 250
           L+ +Y KC +         +  A++VFDEM +R+ +SW +++T Y +N            
Sbjct: 193 LVDMYSKCGN---------VNDAQQVFDEMGDRNVVSWNSLITCYEQN------------ 231

Query: 251 MSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
                G A  AL    V     ML   ++ DE T  SVISACA+    ++G++VHA +++
Sbjct: 232 -----GPAVEALKVFQV-----MLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVK 281

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
            +        + ++NA V +Y KC ++ EAR IF+ MP R++++  +++S Y  A     
Sbjct: 282 MDKLRN---DIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKA 338

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
           A+ +F  M ERN++SW  +I+G  QNG  EE L LF  ++ E   P  Y FA  + +CA 
Sbjct: 339 ARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACAD 398

Query: 431 LGALENGRQLHAQLV------HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           L  L  G Q H  ++       SG +  +  GN+LI MY +CG VE    VF  M   D 
Sbjct: 399 LADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDC 458

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
           VSWNAMI    Q+G G  A+EL+ +ML  G  PD IT + VLSAC HAG V+EGR YF +
Sbjct: 459 VSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSS 518

Query: 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
           M   +G+ P  DHY   +DLL RAG   EAK +I+ +P +P + IW +LLA C++H NI 
Sbjct: 519 MTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNIT 578

Query: 605 LGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVD 664
           LG   AE+LF++   ++G YVLLSNMYA LG+W DA  VRKLMR  GV K+PGCSWI++ 
Sbjct: 579 LGKYVAEKLFEVETSNSGPYVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCSWIKIP 638

Query: 665 NKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRK 696
              HVF+V D +HP  + ++  L+ L+ EMR+
Sbjct: 639 GHAHVFMVKDKSHPRKKQIHSLLDILIAEMRQ 670


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 255/691 (36%), Positives = 386/691 (55%), Gaps = 44/691 (6%)

Query: 11  TLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYAR 70
           T ++ +A  L  C  ++ +++   R VHA +I SGF     I NRLID Y K   L   R
Sbjct: 17  TDSSPFAKLLDSC-IKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGR 75

Query: 71  TLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNG 130
            +FD++PQ +I    +++   +    +  A  +F   P   RD   +N+M++ ++ +   
Sbjct: 76  QVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMP--ERDQCTWNSMVSGFAQHDRC 133

Query: 131 HAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNA 190
             A+  F  M ++    + ++F SVLSA + + +  K  +Q+H  + KS       + +A
Sbjct: 134 EEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKG-VQVHSLIAKSPFLSDVYIGSA 192

Query: 191 LISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDG 250
           L+ +Y KC +         +  A+RVFDEM +R+ +SW +++T + +N     A E LD 
Sbjct: 193 LVDMYSKCGN---------VNDAQRVFDEMGDRNVVSWNSLITCFEQNG---PAVEALDV 240

Query: 251 MSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
                                 ML  R++ DE T  SVISACA+    ++G++VH  +++
Sbjct: 241 FQ-------------------MMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVK 281

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
            +        + ++NA V +Y KC ++ EAR IF+ MP R++++  +++S Y  A     
Sbjct: 282 NDKLRN---DIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKA 338

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
           A+ +F  M ERN++SW  +I+G  QNG  EE L LF  ++ E   P  Y+FA  + +CA 
Sbjct: 339 ARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACAD 398

Query: 431 LGALENGRQLHAQLV------HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           L  L  G Q H  ++       SG +  +  GN+LI MY +CG VE    VF  M   D 
Sbjct: 399 LAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDC 458

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
           VSWNAMI    Q+G G  A+EL+ +ML+ G  PD IT + VLSAC HAG V+EGR YF +
Sbjct: 459 VSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSS 518

Query: 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
           M   +G+ P  DHY   +DLL RAG   EAK +I+ +P +P + IW +LLA C++H NI 
Sbjct: 519 MTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNIT 578

Query: 605 LGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVD 664
           LG   AE+L ++ P ++G YVLLSNMYA LG+W+D   VRK MR  GV K+PGCSWI++ 
Sbjct: 579 LGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQ 638

Query: 665 NKVHVFLVDDTAHPEAQAVYKYLEQLVLEMR 695
              HVF+V D +HP  + ++  L+ L+ EMR
Sbjct: 639 GHDHVFMVKDKSHPRKKQIHSLLDILIAEMR 669


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 276/763 (36%), Positives = 421/763 (55%), Gaps = 105/763 (13%)

Query: 34  ARSVHAHMISSGFKP-REHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
            R VH H+I++G       I N L+++Y K   +  AR +F                 Y 
Sbjct: 332 GREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVF-----------------YF 374

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
            +D                +D+V +N+MIT    N     A+E ++ MRR D+ P +FT 
Sbjct: 375 MTD----------------KDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTL 418

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            S LS+ A + +  K   Q+H   +K G  L  SV NAL+++Y +            +  
Sbjct: 419 ISSLSSCASL-KWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAE---------TGYLNE 468

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
            R++F  MPE D++SW +++    +++           + E V    NA  +G       
Sbjct: 469 CRKIFSSMPEHDQVSWNSIIGALARSE---------RSLPEAVVCFLNAQRAGQ------ 513

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                 +L+  T++SV+SA ++     LGKQ+H   L+              NAL+  Y 
Sbjct: 514 ------KLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEA----TTENALIACYG 563

Query: 333 KCGKVNEARDIFNQMPE-RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
           KCG+++    IF++M E RD V+WN+++S Y+   L+ +A  L           W ++ +
Sbjct: 564 KCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLV----------WFMLQT 613

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
           G                 RL+ F      +A  +++ A +  LE G ++HA  V +  +S
Sbjct: 614 G----------------QRLDSF-----MYATVLSAFASVATLERGMEVHACSVRACLES 652

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
            +  G+AL+ MY++CG ++ A   FNTMP  +S SWN+MI+   +HG G  A++L+E M 
Sbjct: 653 DVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMK 712

Query: 512 KEG-ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
            +G   PD +TF+ VLSAC+HAGL++EG ++FE+M   YG+ P  +H++   D+L RAG+
Sbjct: 713 LDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGE 772

Query: 571 FSEAKDVIDSLPFKPSAPIWEALL-AGCRIHG-NIDLGIQAAEQLFQLMPHHAGTYVLLS 628
             + +D I+ +P KP+  IW  +L A CR +G   +LG +AAE LFQL P +A  YVLL 
Sbjct: 773 LDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLG 832

Query: 629 NMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLE 688
           NMYA  GRW+D  + RK M+D  VKKE G SW+ + + VH+F+  D +HP+A  +YK L+
Sbjct: 833 NMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLK 892

Query: 689 QLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGL-MKLPGGATVRVLKNL 747
           +L  +MR  GYVP T F L+D+E + KE  LS HSEKLAVAF L  +      +R++KNL
Sbjct: 893 ELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNL 952

Query: 748 RICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           R+CGDCH+AFK++SK+ GR+I++RD  RFHHF+DG CSC D+W
Sbjct: 953 RVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 127/518 (24%), Positives = 228/518 (44%), Gaps = 103/518 (19%)

Query: 12  LANRYA--SQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLV-Y 68
            +N+YA  S L+ C     +     R +H  M    +     + N LI +Y K +  V Y
Sbjct: 99  FSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGY 158

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           A   F +I                                 +++++V +N++I+ YS   
Sbjct: 159 ALCAFGDI---------------------------------EVKNSVSWNSIISVYSQAG 185

Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM-QMHCTVVKSG--TGLFT 185
           +  +A  +F  M+ D  +P  +TF S+++    + E + + + Q+ CT+ KSG  T LF 
Sbjct: 186 DQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLF- 244

Query: 186 SVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245
            V + L+S + K  S  +         AR+VF++M  R+ ++   +M G V+  + + A 
Sbjct: 245 -VGSGLVSAFAKSGSLSY---------ARKVFNQMETRNAVTLNGLMVGLVRQKWGEEAT 294

Query: 246 EFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
           +    M+  + V+  + +              I L  F   S+          + G++VH
Sbjct: 295 KLFMDMNSMIDVSPESYV--------------ILLSSFPEYSLAEEVG----LKKGREVH 336

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365
            +++ T      +F + + N LV +Y KCG + +AR +F  M ++D VSWN++++     
Sbjct: 337 GHVITT---GLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMIT----- 388

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425
                                     GL QNG   E ++ +  MR     P  +    ++
Sbjct: 389 --------------------------GLDQNGCFIEAVERYKSMRRHDILPGSFTLISSL 422

Query: 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV 485
           +SCA L   + G+Q+H + +  G D ++S  NAL+T+YA  G +     +F++MP  D V
Sbjct: 423 SSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQV 482

Query: 486 SWNAMIAALGQHGNG-ARAIELYEQMLKEGILPDRITF 522
           SWN++I AL +       A+  +    + G   +RITF
Sbjct: 483 SWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITF 520



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 134/522 (25%), Positives = 226/522 (43%), Gaps = 82/522 (15%)

Query: 72  LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           L+      D+     LI AY  + +   AR++F++ PL  R+ V +  +++ YS N    
Sbjct: 27  LYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPL--RNCVSWACIVSGYSRNGEHK 84

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQ-CMQMHCTVVKSGTGLFTSVLNA 190
            A+   RDM ++ +  + + F SVL A   I         Q+H  + K    +   V N 
Sbjct: 85  EALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNV 144

Query: 191 LISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDG 250
           LIS+Y KC+ S        +G A   F ++  ++ +SW ++++ Y +     +A      
Sbjct: 145 LISMYWKCIGS--------VGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSS 196

Query: 251 MSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVI-SACA-NSGLFRLGKQVHAYL 308
           M  +                        +  E+T+ S++ +AC+      RL +Q+    
Sbjct: 197 MQYDGS----------------------RPTEYTFGSLVTTACSLTEPDVRLLEQI---- 230

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
           + T  K      L V + LV+ + K G ++ AR +FNQM  R+ V+ N ++   V     
Sbjct: 231 MCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWG 290

Query: 369 DEAKSLF---EAMRERNLLSWTVMISGLAQNGYGEE-GLKLFSQMRLEGFKPCDYAFAGA 424
           +EA  LF    +M + +  S+ +++S   +    EE GLK                    
Sbjct: 291 EEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLK-------------------- 330

Query: 425 ITSCAGLGALENGRQLHAQLVHSGY-DSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
                       GR++H  ++ +G  D  +  GN L+ MYA+CG +  A  VF  M + D
Sbjct: 331 -----------KGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKD 379

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFE 543
           SVSWN+MI  L Q+G    A+E Y+ M +  ILP   T ++ LS+C      K G++   
Sbjct: 380 SVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQ--- 436

Query: 544 TMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582
            +HG     GI          + L    G  +E + +  S+P
Sbjct: 437 -IHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMP 477



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 106/438 (24%), Positives = 192/438 (43%), Gaps = 88/438 (20%)

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
           +AR+VFDEMP R+ +SW  +++GY +N     A  FL  M +  G+  N           
Sbjct: 54  SARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKE-GIFSN----------- 101

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRL--GKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
                     ++ + SV+ AC   G   +  G+Q+H  +     K +      V+N L++
Sbjct: 102 ----------QYAFVSVLRACQEIGSVGILFGRQIHGLMF----KLSYAVDAVVSNVLIS 147

Query: 330 LYWKC-GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV 388
           +YWKC G V  A   F  +  ++ VSWN+I+S Y  AG   + +S F             
Sbjct: 148 MYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAG---DQRSAF------------- 191

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA--LENGRQLHAQLVH 446
                          ++FS M+ +G +P +Y F   +T+   L    +    Q+   +  
Sbjct: 192 ---------------RIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQK 236

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
           SG  + L  G+ L++ +A+ G +  A  VFN M   ++V+ N ++  L +   G  A +L
Sbjct: 237 SGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKL 296

Query: 507 YEQMLKE-GILPDRITFLTVLSACNHAGLVKE-GRRYFETMHGP----------YGIPPG 554
           +  M     + P+  +++ +LS+     L +E G +    +HG            GI  G
Sbjct: 297 FMDMNSMIDVSPE--SYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNG 354

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
                  +++  + G  ++A+ V   +  K S   W +++ G   +G     I+A E+  
Sbjct: 355 ------LVNMYAKCGSIADARRVFYFMTDKDSVS-WNSMITGLDQNGCF---IEAVERYK 404

Query: 615 QLMPHH--AGTYVLLSNM 630
            +  H    G++ L+S++
Sbjct: 405 SMRRHDILPGSFTLISSL 422



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 6/124 (4%)

Query: 425 ITSCAG-LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
           + SC G  GA    R  H++L  +  D  +   N LI  Y   G   +A  VF+ MP  +
Sbjct: 10  VQSCVGHRGA---ARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRN 66

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFE 543
            VSW  +++   ++G    A+     M+KEGI  ++  F++VL AC   G V  G  +  
Sbjct: 67  CVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSV--GILFGR 124

Query: 544 TMHG 547
            +HG
Sbjct: 125 QIHG 128


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/657 (36%), Positives = 372/657 (56%), Gaps = 59/657 (8%)

Query: 146 KPDNFTFTSVLSALALI--VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
           KP   T+ +++   +    +EE K+   +H  +  SG      + N L+ +Y KC S   
Sbjct: 82  KPPASTYCNLIQVCSQTRALEEGKK---VHEHIRTSGFVPGIVIWNRLLRMYAKCGS--- 135

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
                 +  AR+VFDEMP RD  SW  M+ GY +   L+ AR+  D M+E    +W A++
Sbjct: 136 ------LVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMV 189

Query: 264 SGYVHRE-------LKMLMLRI---QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
           +GYV ++       L  LM R+   + + FT +  ++A A     R GK++H +++R   
Sbjct: 190 TGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGL 249

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
                                              + D V W++++  Y   G IDEA++
Sbjct: 250 -----------------------------------DSDEVLWSSLMDMYGKCGCIDEARN 274

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
           +F+ + E++++SWT MI    ++    EG  LFS++     +P +Y FAG + +CA L  
Sbjct: 275 IFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTT 334

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
            E G+Q+H  +   G+D    A ++L+ MY +CG +E+A  V +  P  D VSW ++I  
Sbjct: 335 EELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGG 394

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
             Q+G    A++ ++ +LK G  PD +TF+ VLSAC HAGLV++G  +F ++   + +  
Sbjct: 395 CAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSH 454

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
             DHY   +DLL R+G+F + K VI  +P KPS  +W ++L GC  +GNIDL  +AA++L
Sbjct: 455 TSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQEL 514

Query: 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVD 673
           F++ P +  TYV ++N+YA  G+W++  ++RK M++ GV K PG SW E+  K HVF+  
Sbjct: 515 FKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAA 574

Query: 674 DTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLM 733
           DT+HP    + ++L +L  +M++ GYVP T  VLHD+E +QKE  L  HSEKLAVAF ++
Sbjct: 575 DTSHPMYNQIVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAIL 634

Query: 734 KLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
               G  ++V KNLR C DCH A KF+S +  R+I VRD  RFH F +G+CSCGDYW
Sbjct: 635 STEEGTAIKVFKNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 143/529 (27%), Positives = 243/529 (45%), Gaps = 77/529 (14%)

Query: 13  ANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTL 72
           A+ Y + +Q+C     +     + VH H+ +SGF P   I NRL+ +Y K   LV AR +
Sbjct: 85  ASTYCNLIQVCSQTRALEE--GKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKV 142

Query: 73  FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
           FDE+P  D+ +   ++  Y+    ++ AR++F++  +  +D+  + AM+T Y        
Sbjct: 143 FDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDE--MTEKDSYSWTAMVTGYVKKDQPEE 200

Query: 133 AIELFRDMRR-DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
           A+ L+  M+R  + +P+ FT  S+  A A  V+  ++  ++H  +V++G      + ++L
Sbjct: 201 ALVLYSLMQRVPNSRPNIFT-VSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSL 259

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           + +Y KC           +  AR +FD++ E+D +SWT+M+  Y K+      RE     
Sbjct: 260 MDMYGKC---------GCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRW---REGFSLF 307

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
           SE VG                        +E+T+  V++ACA+     LGKQVH Y+ R 
Sbjct: 308 SELVGSCERP-------------------NEYTFAGVLNACADLTTEELGKQVHGYMTRV 348

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
              P   +S   +++LV +Y KCG +  A+ + +  P+ DLVSW                
Sbjct: 349 GFDP---YSF-ASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSW---------------- 388

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
                          T +I G AQNG  +E LK F  +   G KP    F   +++C   
Sbjct: 389 ---------------TSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHA 433

Query: 432 GALENGRQLHAQLVHSGYDSSLSAG-NALITMYARCGVVEAANCVFNTMPNVDS-VSWNA 489
           G +E G +    +      S  S     L+ + AR G  E    V + MP   S   W +
Sbjct: 434 GLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWAS 493

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKE 537
           ++     +GN   A E  +++ K  I P+  +T++T+ +    AG  +E
Sbjct: 494 VLGGCSTYGNIDLAEEAAQELFK--IEPENPVTYVTMANIYAAAGKWEE 540



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 60/115 (52%)

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
           G++ L+   Q+     KP    +   I  C+   ALE G+++H  +  SG+   +   N 
Sbjct: 66  GQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNR 125

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE 513
           L+ MYA+CG +  A  VF+ MPN D  SWN M+    + G    A +L+++M ++
Sbjct: 126 LLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEK 180



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 10/218 (4%)

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
           L+ EA  L    ++    ++  +I   +Q    EEG K+   +R  GF P    +   + 
Sbjct: 69  LLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLR 128

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
             A  G+L + R++  ++     +  L + N ++  YA  G++E A  +F+ M   DS S
Sbjct: 129 MYAKCGSLVDARKVFDEMP----NRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYS 184

Query: 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546
           W AM+    +      A+ LY  M +  +   R    TV  A   A  VK  RR  E +H
Sbjct: 185 WTAMVTGYVKKDQPEEALVLYSLMQR--VPNSRPNIFTVSIAVAAAAAVKCIRRGKE-IH 241

Query: 547 GPY---GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581
           G     G+   E  ++  +D+  + G   EA+++ D +
Sbjct: 242 GHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKI 279


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/550 (42%), Positives = 336/550 (61%), Gaps = 22/550 (4%)

Query: 259 WNALISGYVHRE--------------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304
           WN LI  +V                 ++M    +Q D  T+  ++ + A+  L  LG+ V
Sbjct: 27  WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSV 86

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVS 364
           HA +LR      P     V  +L+++Y  CG +  AR +F+++P+ DL SWN+I++A   
Sbjct: 87  HAQILRFGLAIDPF----VQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQ 142

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF---KPCDYAF 421
           AGL+D A++LF  M ERN++SW+ MI+G  + G  +E L LF +M++ G    +P ++  
Sbjct: 143 AGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTM 202

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM-P 480
           +G + +C  LGALE+G+  HA +   G    +  G ALI MYA+CG VE A  VF+ + P
Sbjct: 203 SGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGP 262

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
           N D ++W+AMI+ L  HG     + L+ +M+ +G+ P+ +TFL V  AC H GLV EG+ 
Sbjct: 263 NKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKD 322

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
           Y   M   Y I P   HY   +DL  RAG+  EA +V+ S+P +P   +W ALL+G R+H
Sbjct: 323 YLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMH 382

Query: 601 GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSW 660
           G+I+    A ++L +L P ++G YVLLSN+YA  GRW+D   VR LM   G+KK PGCS 
Sbjct: 383 GDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSL 442

Query: 661 IEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALS 720
           IEV   +H F V D +HPE + ++  LE+++  ++  GYV +TK VL D++ + KE ALS
Sbjct: 443 IEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALS 502

Query: 721 THSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFR 780
            HSEKLA+A+G +K   G  +R++KNLRIC DCH A K +SKV  REI+VRD  RFHHF 
Sbjct: 503 LHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFT 562

Query: 781 DGKCSCGDYW 790
            G CSC DYW
Sbjct: 563 QGLCSCRDYW 572



 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 168/362 (46%), Gaps = 48/362 (13%)

Query: 27  NPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTT 86
           +P    L RSVHA ++  G      +   LI +Y     L +AR +FDEIPQPD+ +  +
Sbjct: 76  SPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNS 135

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR---D 143
           +I A   +  V +AR +F   P   R+ + ++ MI  Y        A+ LFR+M+    +
Sbjct: 136 IINANFQAGLVDMARNLFAVMP--ERNVISWSCMINGYVRCGQYKEALALFREMQMLGVN 193

Query: 144 DVKPDNFTFTSVLSALALI--VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSS 201
           DV+P+ FT + VL+A   +  +E  K     H  + K G  +   +  ALI +Y KC S 
Sbjct: 194 DVRPNEFTMSGVLAACGRLGALEHGKWA---HAYIDKCGMPVDVVLGTALIDMYAKCGS- 249

Query: 202 PFVSSRSLMGAARRVFDEM-PERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN-VGVAW 259
                   +  A  VF  + P +D ++W+ M++G             + G++E  VG   
Sbjct: 250 --------VEKATWVFSNLGPNKDVMAWSAMISGLA-----------MHGLAEECVG--- 287

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
             L S       KM+   ++ +  T+ +V  AC + GL   GK    YL R     +   
Sbjct: 288 --LFS-------KMINQGVRPNAVTFLAVFCACVHGGLVSEGKD---YLRRMTEDYSIIP 335

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
           ++     +V LY + G++ EA ++   MP E D++ W A+LS     G I+  +   + +
Sbjct: 336 TIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKL 395

Query: 379 RE 380
            E
Sbjct: 396 IE 397


>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
          Length = 770

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 261/712 (36%), Positives = 393/712 (55%), Gaps = 59/712 (8%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+   T+L+ AY      + AR +F+  P   R+ V + A++T Y+ NS     +E+F +
Sbjct: 112 DMFVATSLVNAYMRCGAARDARRLFDGMP--ERNVVTWTALVTGYTLNSQPALGLEVFVE 169

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M      P ++T  + L+A  L   +     Q+H   +K G    TS+ N+L S+Y K  
Sbjct: 170 MLEMGRYPSHYTLGATLNA-CLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLG 228

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
           S         + +A R F  +PE++ ++WTTM++   +++             E V +  
Sbjct: 229 S---------LDSALRAFWRIPEKNVITWTTMISACAEDE-------------ECVELGL 266

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
           +  I         MLM  +  +EFT TSV+S C       LGKQV A+  +       E 
Sbjct: 267 SLFID--------MLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGC----ET 314

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
           +LPV N+ + LY + G+ +EA  +F QM +  +++WNA++S Y  A ++D AK   +A R
Sbjct: 315 NLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGY--AQIMDSAKDDLQA-R 371

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
            R                 G + L +F  ++    KP  + F+  ++ C+ + ALE G Q
Sbjct: 372 SR-----------------GFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQ 414

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           +HAQ + SG+ S +   +AL+ MY +CG ++ AN  F  MP    V+W +MI+   QHG 
Sbjct: 415 IHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQ 474

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA 559
              AI+L+E+M   G+ P+ ITF+++LSAC++AGLV+E   YF+ M   Y I P  DHY 
Sbjct: 475 PQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYG 534

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
             ID+  R G+  +A   I    F+P+  IW +L+AGCR HGN++L   AA++L +L P 
Sbjct: 535 CMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPK 594

Query: 620 HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPE 679
              TY+LL NMY +  RW D ARVRKLM+   V      SWI + +KV+ F  +D  HP+
Sbjct: 595 GIETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQ 654

Query: 680 AQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYA--LSTHSEKLAVAFGLMKLPG 737
           A  +Y+ LE L+ + + +GY P     L D E D+K  A  L  HSE+LAVA GL++ P 
Sbjct: 655 ATELYQLLENLLEKAKAIGYEPYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQTPP 714

Query: 738 GATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
           GATVRV KN+ +C DCH++ K  S +  REI+VRD KR H F+DG+CSCGD+
Sbjct: 715 GATVRVTKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGRCSCGDF 766



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/455 (22%), Positives = 196/455 (43%), Gaps = 82/455 (18%)

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H  + K+G G    V  +L++ Y++C ++           ARR+FD MPER+ ++WT +
Sbjct: 100 VHGHMAKTGAGADMFVATSLVNAYMRCGAAR---------DARRLFDGMPERNVVTWTAL 150

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           +TGY  N       E                        ++ML +      +T  + ++A
Sbjct: 151 VTGYTLNSQPALGLEVF----------------------VEMLEMGRYPSHYTLGATLNA 188

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           C  S    LGKQVH Y ++  A+        + N+L +LY K G ++ A   F ++PE++
Sbjct: 189 CLASCDVDLGKQVHGYAIKYGAESITS----MGNSLCSLYAKLGSLDSALRAFWRIPEKN 244

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEE-GLKLFSQMR 410
           +++                               WT MIS  A++    E GL LF  M 
Sbjct: 245 VIT-------------------------------WTTMISACAEDEECVELGLSLFIDML 273

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
           ++G  P ++     ++ C     L  G+Q+ A     G +++L   N+ + +Y R G  +
Sbjct: 274 MDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETD 333

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQ-----------HGNGARAIELYEQMLKEGILPDR 519
            A  +F  M +   ++WNAMI+   Q              G +A+ ++  + +  + PD 
Sbjct: 334 EAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDL 393

Query: 520 ITFLTVLSACNHAGLVKEGRR-YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVI 578
            TF ++LS C+    +++G + + +T+    G        +  +++  + G   +A    
Sbjct: 394 FTFSSILSVCSAMMALEQGEQIHAQTIKS--GFLSDVVVNSALVNMYNKCGCIQDANKAF 451

Query: 579 DSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
             +P + +   W ++++G   HG     IQ  E++
Sbjct: 452 LEMPTR-TFVTWTSMISGYSQHGQPQEAIQLFEEM 485



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 142/299 (47%), Gaps = 11/299 (3%)

Query: 328 VTLYWKC---GKVNEARDIFNQMPER----DLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           V L  +C   G +  AR +   M +     D+    ++++AY+  G   +A+ LF+ M E
Sbjct: 82  VPLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGAARDARRLFDGMPE 141

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
           RN+++WT +++G   N     GL++F +M   G  P  Y     + +C     ++ G+Q+
Sbjct: 142 RNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQV 201

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           H   +  G +S  S GN+L ++YA+ G +++A   F  +P  + ++W  MI+A  +    
Sbjct: 202 HGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEEC 261

Query: 501 AR-AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA 559
               + L+  ML +G++P+  T  +V+S C     +  G++  +      G         
Sbjct: 262 VELGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQ-VQAFSFKIGCETNLPVKN 320

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG-CRIHGNIDLGIQAAEQLFQLM 617
             + L  R G+  EA  + + +    S   W A+++G  +I  +    +QA  + FQ +
Sbjct: 321 STMYLYLRKGETDEAMRLFEQME-DASIITWNAMISGYAQIMDSAKDDLQARSRGFQAL 378



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 154/350 (44%), Gaps = 53/350 (15%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTL----FDEIPQPDIVARTTLI 88
           L  S+   M+  G  P E  +  ++ +    L L   + +    F    + ++  + + +
Sbjct: 264 LGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTM 323

Query: 89  AAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSH-----------NSNGHAAIELF 137
             Y        A  +F +  ++    + +NAMI+ Y+             S G  A+ +F
Sbjct: 324 YLYLRKGETDEAMRLFEQ--MEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIF 381

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           RD++R  +KPD FTF+S+LS  + ++  E Q  Q+H   +KSG      V +AL+++Y K
Sbjct: 382 RDLKRSVMKPDLFTFSSILSVCSAMMALE-QGEQIHAQTIKSGFLSDVVVNSALVNMYNK 440

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C           +  A + F EMP R  ++WT+M++GY ++     A +  +        
Sbjct: 441 C---------GCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFE-------- 483

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                         +M +  ++ +E T+ S++SAC+ +GL    ++   Y    + +   
Sbjct: 484 --------------EMRLAGVRPNEITFVSLLSACSYAGLV---EEAEHYFDMMKKEYCI 526

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAG 366
           E  +     ++ ++ + G+V +A     +   E +   W+++++   S G
Sbjct: 527 EPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHG 576


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 242/713 (33%), Positives = 390/713 (54%), Gaps = 70/713 (9%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+   T L+  Y+   ++  A+ +FN    + RD V +NAMI A+S ++     I     
Sbjct: 141 DLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQ 200

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL--NALISVYVK 197
           M++  V P++ T  S+L  +        Q   +H   +++    F +V+   AL+ +Y K
Sbjct: 201 MQQAGVTPNSSTLVSILPTIGQ-ANALHQGKAIHAYYIRN--FFFDNVVLQTALLDMYAK 257

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C          L+  AR++F+ + +++++ W+ M+ GYV +D +  A    D M      
Sbjct: 258 C---------HLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDM------ 302

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                          + +  +     T  +++ ACA     + GK++H +++++      
Sbjct: 303 ---------------LCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGM---- 343

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
           +    V N+L+++Y KCG ++ A    ++M  +D VS++AI+S                 
Sbjct: 344 DLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIIS----------------- 386

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
                         G  QNGY E+ L +F QM+  G  P        + +C+ L AL++G
Sbjct: 387 --------------GCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHG 432

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
              H   V  G+ +  S  NA+I MY++CG +  +  +F+ M N D +SWN MI   G H
Sbjct: 433 TCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIH 492

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
           G    A+ L++++   G+ PD +T + VLSAC+H+GLV EG+ +F +M   + I P   H
Sbjct: 493 GLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAH 552

Query: 558 YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           Y   +DLL RAG   EA   I  +PF P+  IW ALLA CR H NI++G Q ++++  L 
Sbjct: 553 YICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLG 612

Query: 618 PHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAH 677
           P   G +VL+SN+Y+++GRWDDAA +R + R  G KK PGCSW+E+   +HVF+    +H
Sbjct: 613 PEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQSH 672

Query: 678 PEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPG 737
           P++ ++ K L++L+++M+KLGY  D+ FVLHD+E ++KE  L  HSEK+A+AFG++    
Sbjct: 673 PQSASINKKLQELLVQMKKLGYRADSSFVLHDVEEEEKEQILLYHSEKVAIAFGILNTSP 732

Query: 738 GATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            + + V KNLRIC DCH+A KF++ +  REI VRD  RFHHF+DG C+C D+W
Sbjct: 733 SSRILVTKNLRICVDCHSAIKFITLLTEREITVRDASRFHHFKDGICNCQDFW 785



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 134/541 (24%), Positives = 241/541 (44%), Gaps = 87/541 (16%)

Query: 73  FDEIPQP----DIVARTTLIAAYSASDN-VKLAREMFNKTPLKMRDTVFYNAMITAYSHN 127
           F   P P    D  A  T +A Y  S N ++LAR +F++ P      V +N MI  Y+ +
Sbjct: 28  FSPHPHPHRVSDSDAAATQLARYHISRNEIQLARHVFDQIPKP--SVVLWNMMIRTYAWS 85

Query: 128 SNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL-ALIVEEEKQCMQMHCTVVKSGTGLFTS 186
                +I L+  M +  V P NFTF  +L A  +L   +  + +  H  ++     L+ S
Sbjct: 86  GPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVS 145

Query: 187 VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMP--ERDELSWTTMMTGYVKNDYLDAA 244
              AL+ +Y KC           +  A+ +F+ +   +RD ++W  M+  +         
Sbjct: 146 --TALLHMYAKC---------GHLYQAQTLFNSISHQDRDIVAWNAMIAAF--------- 185

Query: 245 REFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304
                        +++AL +  +H   +M    +  +  T  S++     +     GK +
Sbjct: 186 -------------SFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAI 232

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVS 364
           HAY +R         ++ +  AL+ +Y KC  +  AR IFN + +++ V W+A++  YV 
Sbjct: 233 HAYYIRNFFFD----NVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVL 288

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
              I +A +L++ M                              + + G  P     A  
Sbjct: 289 HDSISDALALYDDM------------------------------LCIYGLNPTPATLATM 318

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           + +CA L  L+ G++LH  ++ SG D   + GN+LI+MYA+CG+++ A    + M   D+
Sbjct: 319 LRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDT 378

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
           VS++A+I+   Q+G   +A+ ++ QM   GI P   T + +L AC+H   ++ G      
Sbjct: 379 VSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHG----TC 434

Query: 545 MHGPYGIPPGEDHYAR----FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
            HG Y +  G  +        ID+  + GK + ++++ D +  +     W  ++ G  IH
Sbjct: 435 CHG-YTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIIS-WNTMIIGYGIH 492

Query: 601 G 601
           G
Sbjct: 493 G 493



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 117/483 (24%), Positives = 210/483 (43%), Gaps = 107/483 (22%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            +++HA+ I + F     +   L+D+Y K   L YAR +F+ + + + V  + +I  Y  
Sbjct: 229 GKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVL 288

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
            D++  A  +             Y+ M+  Y  N                   P   T  
Sbjct: 289 HDSISDALAL-------------YDDMLCIYGLN-------------------PTPATLA 316

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           ++L A A +  + K+  ++HC ++KSG  L T+V N+LIS+Y KC          +M  A
Sbjct: 317 TMLRACAQLT-DLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKC---------GIMDNA 366

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
               DEM  +D +S++ +++G V+N Y + A      M ++ G+A       Y+      
Sbjct: 367 VGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQM-QSSGIA------PYLE----- 414

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY-LLRTEAKPTPEFSLPVNNALVTLYW 332
                     T  +++ AC++    + G   H Y ++R     T      + NA++ +Y 
Sbjct: 415 ----------TMIALLPACSHLAALQHGTCCHGYTVVRGFTNDT-----SICNAIIDMYS 459

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           KCGK+  +R+IF++M  RD++SWN ++  Y   GL  EA SLF+                
Sbjct: 460 KCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQ---------------- 503

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDS 451
                          +++  G KP D      +++C+  G +  G+   + +  +     
Sbjct: 504 ---------------ELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKP 548

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGNGARAIELYEQM 510
            ++    ++ + AR G ++ A      MP V +V  W A++AA   H N    IE+ EQ+
Sbjct: 549 RMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKN----IEMGEQV 604

Query: 511 LKE 513
            K+
Sbjct: 605 SKK 607



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 120/247 (48%), Gaps = 10/247 (4%)

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
           ++S   I  A+ +F+ + + +++ W +MI   A +G  ++ + L+  M   G  P ++ F
Sbjct: 51  HISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTF 110

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
              + +C+ L AL+ GR +H      G    L    AL+ MYA+CG +  A  +FN++ +
Sbjct: 111 PFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISH 170

Query: 482 VDS--VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
            D   V+WNAMIAA   H   A+ I    QM + G+ P+  T +++L     A  + +G+
Sbjct: 171 QDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGK 230

Query: 540 RYFETMHGPYGIPPGEDHY---ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
                +H  Y      D+       +D+  +      A+ + +++  K +   W A++ G
Sbjct: 231 ----AIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVN-KKNDVCWSAMIGG 285

Query: 597 CRIHGNI 603
             +H +I
Sbjct: 286 YVLHDSI 292


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/716 (35%), Positives = 391/716 (54%), Gaps = 69/716 (9%)

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +  P   ++     A S S ++  AR++F  T ++  D    N MI  Y+ + N + A+ 
Sbjct: 40  LHNPLFSSKLISFLALSHSGDLNYARKLF--TQMQNPDPFICNTMIRGYARSQNPYEAVS 97

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           L+  M    V  DN+T+  VL+A A +    K   + HC V+K+G G    V+NALI  Y
Sbjct: 98  LYYFMVERGVPVDNYTYPFVLAACARL-GAVKLGRRFHCEVLKNGFGSDLFVINALIQFY 156

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
             C S          G A  VFDE   RD ++W  M+  ++     + A + LD M++  
Sbjct: 157 HNCGS---------FGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTK-- 205

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                              +  ++ DE T  S++ ACA  G    GK +H+Y      + 
Sbjct: 206 -------------------LDNLRPDEVTMVSLVPACAQLGNLERGKFLHSY----SKEL 242

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
             + +L VNNA++ +Y KC                                 I+ A+ +F
Sbjct: 243 GLDENLRVNNAILDMYCKCDD-------------------------------IESAQEVF 271

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
             +RE+++LSWT M+SGLA++GY +E L LF +M+L   +  +    G +++CA  GAL+
Sbjct: 272 NRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALD 331

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            G+ +H  +     +  L    AL+ MYA+CG ++ A  VF  M   +  +WNA+I  L 
Sbjct: 332 QGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLA 391

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
            HG+G  AI L++QM  + ++PD +TF+ +L AC+HAGLV EG   F+ M   + I P  
Sbjct: 392 MHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRM 451

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
           +HY   +DLLCRA K  +A   I+++P K ++ +W  LL  CR  G+ DL  +   ++ +
Sbjct: 452 EHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIE 511

Query: 616 LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
           L P   G YV+LSN+YA + +WD A ++RK M+++G++K PGCSWIE++  +H F+  D 
Sbjct: 512 LEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDR 571

Query: 676 AHPEAQAVYKYLEQLVLEMR-KLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMK 734
           +H + + +Y  +E++   +    G+VP T  VL D+E ++KE++L  HSEKLA+A GL+ 
Sbjct: 572 SHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLIS 631

Query: 735 LPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            P G+ +R++KNLR+C DCH+  K  SKV  REIV RD  RFHHF++G CSC D+W
Sbjct: 632 TPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 687



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 138/318 (43%), Gaps = 42/318 (13%)

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
           KQ HA LLRT     P FS  + + L   +   G +N AR +F QM   D    N ++  
Sbjct: 28  KQAHALLLRTHLLHNPLFSSKLISFLALSH--SGDLNYARKLFTQMQNPDPFICNTMIRG 85

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD-YA 420
           Y  +    EA SL+  M ER +                                P D Y 
Sbjct: 86  YARSQNPYEAVSLYYFMVERGV--------------------------------PVDNYT 113

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
           +   + +CA LGA++ GR+ H +++ +G+ S L   NALI  Y  CG    A  VF+   
Sbjct: 114 YPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDEST 173

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLK-EGILPDRITFLTVLSACNHAGLVKEGR 539
             D V+WN MI A    G   +A +L ++M K + + PD +T ++++ AC   G ++ G 
Sbjct: 174 VRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERG- 232

Query: 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI 599
           ++  +     G+          +D+ C+      A++V + +  K     W ++L+G   
Sbjct: 233 KFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLS-WTSMLSGLAK 291

Query: 600 HGNIDLGIQAAEQLFQLM 617
            G      Q A  LFQ M
Sbjct: 292 SGY----FQEALALFQKM 305


>gi|115465559|ref|NP_001056379.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|52353535|gb|AAU44101.1| unknown protein [Oryza sativa Japonica Group]
 gi|113579930|dbj|BAF18293.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|215737011|dbj|BAG95940.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 687

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 263/728 (36%), Positives = 388/728 (53%), Gaps = 78/728 (10%)

Query: 65  KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
           K V+AR +     + D+V    LIA Y     + LAR++F+  P   R+ V  N +++ Y
Sbjct: 36  KAVHARVV--RAARFDVVQYNNLIALYVKCGRLGLARQVFDAMP--SRNPVSGNLLMSGY 91

Query: 125 SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEE--KQCMQMHCTVVKSGTG 182
           + +     A+ L   +R  D   + +  +S ++A A +   +  +QC   H   +K+G  
Sbjct: 92  ASSGRHRDALAL---LRVADFGLNEYVLSSAVAATAHVRSYDMGRQC---HGYAIKAGLA 145

Query: 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLD 242
               V +A++ +Y +C           M  A +VFD +   +  ++ +M+ G++    +D
Sbjct: 146 EHPYVCSAVLHMYCQCAH---------MDEAVKVFDNVSSFNVFAFNSMINGFLDRGQMD 196

Query: 243 AAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGK 302
            +   +  M  NVG                      Q D  +Y +V+  CA++    LG 
Sbjct: 197 GSTSIVRSMVRNVG----------------------QWDHVSYVAVLGHCASTKEVVLGS 234

Query: 303 QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY 362
           QVH   L    K   E ++ V +ALV +Y KC             P              
Sbjct: 235 QVHTQAL----KRRLELNVYVGSALVDMYGKC-----------DFPH------------- 266

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
                  EA  +FE + E+N++SWT +++   QN   E+ L+LF  M +EG +P ++ +A
Sbjct: 267 -------EANRVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYA 319

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
            A+ SCAGL  L+NG  L A  + +G+   L   NAL+ MY++ G VE A  VF +MP  
Sbjct: 320 VALNSCAGLATLKNGNALGACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFLSMPCR 379

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
           D VSWN++I     HG    A+E +  ML    +P  +TF+ VLSAC   GLV EG  Y 
Sbjct: 380 DVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLVDEGFYYL 439

Query: 543 ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
             M    G+ PG++HY   + LLCR G+  EA+  I+S         W +LL+ C+++ N
Sbjct: 440 NIMMKEVGVKPGKEHYTCMVGLLCRVGRLDEAERFIESNCIGTDVVAWRSLLSSCQVYRN 499

Query: 603 IDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIE 662
             LG + AEQ+FQL P   GTYVLLSNMYA   RWD   +VR+LMR+ GV+KEPG SWI+
Sbjct: 500 YGLGHRVAEQIFQLKPKDVGTYVLLSNMYAKANRWDGVVKVRRLMRELGVRKEPGVSWIQ 559

Query: 663 VDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTH 722
           V ++VHVF  +D  HP  + + K L++L+ +++ +GYVP+    LHD+E +QKE  L  H
Sbjct: 560 VGSEVHVFTSEDKKHPYMEQITKKLQELIDKIKVIGYVPNIAVALHDVEDEQKEEHLMYH 619

Query: 723 SEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDG 782
           SEKLA+AFGL++ P G  +R++KN+RIC DCH A K +S   GR IVVRD  RFH   DG
Sbjct: 620 SEKLALAFGLIRTPKGEAIRIMKNVRICDDCHVAIKLISLATGRRIVVRDTVRFHCIEDG 679

Query: 783 KCSCGDYW 790
            CSC DYW
Sbjct: 680 VCSCDDYW 687



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 104/234 (44%), Gaps = 39/234 (16%)

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
           G   LGK VHA ++R        F +   N L+ LY KCG++  AR +F+ MP R+ VS 
Sbjct: 30  GELSLGKAVHARVVRA-----ARFDVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSG 84

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           N ++S Y S+G            R R+ L+                       +R+  F 
Sbjct: 85  NLLMSGYASSG------------RHRDALAL----------------------LRVADFG 110

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
             +Y  + A+ + A + + + GRQ H   + +G        +A++ MY +C  ++ A  V
Sbjct: 111 LNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKV 170

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           F+ + + +  ++N+MI      G    +  +   M++     D ++++ VL  C
Sbjct: 171 FDNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRSMVRNVGQWDHVSYVAVLGHC 224


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 261/761 (34%), Positives = 396/761 (52%), Gaps = 104/761 (13%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L + VH  ++ +GF     + N LI +Y +   L  AR LFD+I   D+V+ +T+I +Y 
Sbjct: 142 LGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSY- 200

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
             D   L  E                              A++L RDM    VKP     
Sbjct: 201 --DRSGLLDE------------------------------ALDLLRDMHVMRVKPSEIGM 228

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSV--LNALISVYVKCVSSPFVSSRSLM 210
            S+   LA +  + K    MH  V+++G    + V    ALI +YVKC +         +
Sbjct: 229 ISITHVLAELA-DLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCEN---------L 278

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVK-NDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
             ARRVFD + +   +SWT M+  Y+  N+  +  R F                      
Sbjct: 279 AYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLF---------------------- 316

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
            +KML   +  +E T  S++  C  +G   LGK +HA+ LR         SL +  A + 
Sbjct: 317 -VKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFT----LSLVLATAFID 371

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           +Y KCG V  AR +F+    +DL+ W+A++S+Y                           
Sbjct: 372 MYGKCGDVRSARSVFDSFKSKDLMMWSAMISSY--------------------------- 404

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
               AQN   +E   +F  M   G +P +      +  CA  G+LE G+ +H+ +   G 
Sbjct: 405 ----AQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGI 460

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
              +    + + MYA CG ++ A+ +F    + D   WNAMI+    HG+G  A+EL+E+
Sbjct: 461 KGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEE 520

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
           M   G+ P+ ITF+  L AC+H+GL++EG+R F  M   +G  P  +HY   +DLL RAG
Sbjct: 521 MEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAG 580

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629
              EA ++I S+P +P+  ++ + LA C++H NI LG  AA+Q   L PH +G  VL+SN
Sbjct: 581 LLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSN 640

Query: 630 MYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQ 689
           +YA+  RW D A +R+ M+D G+ KEPG S IEV+  +H F++ D  HP+A+ VY+ +++
Sbjct: 641 IYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDREHPDAKKVYEMIDE 700

Query: 690 LVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRI 749
           +  ++   GY PD   VLH+++ ++K  AL+ HSEKLA+A+GL+    G  +R++KNLR+
Sbjct: 701 MREKLEDAGYTPDVSCVLHNIDKEKKVSALNYHSEKLAMAYGLISTAPGVPIRIVKNLRV 760

Query: 750 CGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           C DCHNA K +SK+ GREI+VRD  RFHHF++G CSC DYW
Sbjct: 761 CDDCHNATKLLSKIYGREIIVRDRNRFHHFKEGSCSCCDYW 801



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 141/533 (26%), Positives = 239/533 (44%), Gaps = 90/533 (16%)

Query: 97  VKLAREMFNKTPLKMRDTVFYNA-----MITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
           +K +     + PL   ++   NA     +IT+Y  N+    A +++  MR  D + DNF 
Sbjct: 67  IKTSSNCSYRVPLAALESYSSNAAIHSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFV 126

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             SVL A  LI        ++H  VVK+G      V NALI +Y +  S         + 
Sbjct: 127 IPSVLKACCLI-PSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGS---------LA 176

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            AR +FD++  +D +SW+TM+  Y ++  LD A + L  M                    
Sbjct: 177 LARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMH------------------- 217

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
              ++R++  E    S+    A     +LGK +HAY++R       +  +P+  AL+ +Y
Sbjct: 218 ---VMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRN--GKCGKSGVPLCTALIDMY 272

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            KC  +  AR +F+ + +  ++SW A+++AY+    ++                      
Sbjct: 273 VKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLN---------------------- 310

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
                    EG++LF +M  EG  P +      +  C   GALE G+ LHA  + +G+  
Sbjct: 311 ---------EGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTL 361

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
           SL    A I MY +CG V +A  VF++  + D + W+AMI++  Q+     A +++  M 
Sbjct: 362 SLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMT 421

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK- 570
             GI P+  T +++L  C  AG ++ G ++  +     GI         F+D+    G  
Sbjct: 422 GCGIRPNERTMVSLLMICAKAGSLEMG-KWIHSYIDKQGIKGDMILKTSFVDMYANCGDI 480

Query: 571 ------FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
                 F+EA D   S+        W A+++G  +HG+     +AA +LF+ M
Sbjct: 481 DTAHRLFAEATDRDISM--------WNAMISGFAMHGH----GEAALELFEEM 521



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 165/387 (42%), Gaps = 54/387 (13%)

Query: 279 QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
           ++D F   SV+ AC     F LG++VH ++++          + V NAL+ +Y + G + 
Sbjct: 121 EVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHG----DVFVCNALIMMYSEVGSLA 176

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGY 398
            AR +F+++  +D+VSW+ ++ +Y  +GL+DEA                           
Sbjct: 177 LARLLFDKIENKDVVSWSTMIRSYDRSGLLDEA--------------------------- 209

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY--DSSLSAG 456
               L L   M +   KP +          A L  L+ G+ +HA ++ +G    S +   
Sbjct: 210 ----LDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLC 265

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
            ALI MY +C  +  A  VF+ +     +SW AMIAA     N    + L+ +ML EG+ 
Sbjct: 266 TALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMF 325

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
           P+ IT L+++  C  AG ++ G +         G          FID+  + G    A+ 
Sbjct: 326 PNEITMLSLVKECGTAGALELG-KLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARS 384

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG--------TYVLLS 628
           V DS   K    +W A+++    +  ID       + F +  H  G        T V L 
Sbjct: 385 VFDSFKSK-DLMMWSAMISSYAQNNCID-------EAFDIFVHMTGCGIRPNERTMVSLL 436

Query: 629 NMYANLGRWDDAARVRKLMRDRGVKKE 655
            + A  G  +    +   +  +G+K +
Sbjct: 437 MICAKAGSLEMGKWIHSYIDKQGIKGD 463


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 255/758 (33%), Positives = 398/758 (52%), Gaps = 101/758 (13%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +HA +I  G  P   + N  +++Y K  +L Y   LFD++ Q               
Sbjct: 94  GKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFDKMSQ--------------- 138

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                             R+ V + ++IT ++HNS    A+  F  MR +      F  +
Sbjct: 139 ------------------RNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALS 180

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           SVL A   +   +    Q+HC VVK G G    V + L  +Y KC           +  A
Sbjct: 181 SVLQACTSLGAIQFG-TQVHCLVVKCGFGCELFVGSNLTDMYSKC---------GELSDA 230

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
            + F+EMP +D + WT+M+ G+VKN     A                  ++ Y    +KM
Sbjct: 231 CKAFEEMPCKDAVLWTSMIDGFVKNGDFKKA------------------LTAY----MKM 268

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
           +   + +D+    S +SAC+       GK +HA +L    K   E+   + NAL  +Y K
Sbjct: 269 VTDDVFIDQHVLCSTLSACSALKASSFGKSLHATIL----KLGFEYETFIGNALTDMYSK 324

Query: 334 CGKVNEARDIFNQMPE-RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
            G +  A ++F    +   +VS  AI+  YV    I++A S F  +R R           
Sbjct: 325 SGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRR----------- 373

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
                               G +P ++ F   I +CA    LE+G QLH Q+V   +   
Sbjct: 374 --------------------GIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRD 413

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
               + L+ MY +CG+ + +  +F+ + N D ++WN ++    QHG G  AIE +  M+ 
Sbjct: 414 PFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIH 473

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
            G+ P+ +TF+ +L  C+HAG+V++G  YF +M   YG+ P E+HY+  IDLL RAGK  
Sbjct: 474 RGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLK 533

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632
           EA+D I+++PF+P+   W + L  C+IHG+++    AA++L +L P ++G +VLLSN+YA
Sbjct: 534 EAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAKFAADKLMKLEPENSGAHVLLSNIYA 593

Query: 633 NLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVL 692
              +W+D   +RK+++D  + K PG SW+++ NK HVF V+D +HP+ + +Y+ L+ L+ 
Sbjct: 594 KEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNKTHVFGVEDWSHPQKKEIYEKLDNLLD 653

Query: 693 EMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGD 752
           +++++GYVP T+ VL DM+ + KE  L  HSE++AVAF L+  P G  + V KNLR+C D
Sbjct: 654 QIKRIGYVPQTESVLIDMDDNLKEKLLHYHSERIAVAFSLLTCPTGMPIIVKKNLRVCSD 713

Query: 753 CHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           CH+A KF+SKV  R I+VRD  RFHHF +G CSCGDYW
Sbjct: 714 CHSALKFISKVTERNIIVRDISRFHHFSNGSCSCGDYW 751



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 139/309 (44%), Gaps = 51/309 (16%)

Query: 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
           D  T   +I   A +     GKQ+HA L+R    P    S    N  + LY KCG+++  
Sbjct: 74  DTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLS----NHFLNLYSKCGELDYT 129

Query: 341 RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGE 400
             +F++M +R++VSW +I                               I+G A N   +
Sbjct: 130 IKLFDKMSQRNMVSWTSI-------------------------------ITGFAHNSRFQ 158

Query: 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALI 460
           E L  F QMR+EG     +A +  + +C  LGA++ G Q+H  +V  G+   L  G+ L 
Sbjct: 159 EALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLT 218

Query: 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI 520
            MY++CG +  A   F  MP  D+V W +MI    ++G+  +A+  Y +M+ + +  D+ 
Sbjct: 219 DMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQH 278

Query: 521 TFLTVLSACN-----------HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
              + LSAC+           HA ++K G  Y ET  G        D Y++  D++  + 
Sbjct: 279 VLCSTLSACSALKASSFGKSLHATILKLGFEY-ETFIG----NALTDMYSKSGDMVSASN 333

Query: 570 KFSEAKDVI 578
            F    D I
Sbjct: 334 VFQIHSDCI 342



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 2/188 (1%)

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
           A  I + A    L  G+QLHA L+  G   +    N  + +Y++CG ++    +F+ M  
Sbjct: 79  AHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFDKMSQ 138

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY 541
            + VSW ++I     +     A+  + QM  EG +  +    +VL AC   G ++ G + 
Sbjct: 139 RNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQ- 197

Query: 542 FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
              +    G        +   D+  + G+ S+A    + +P K  A +W +++ G   +G
Sbjct: 198 VHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCK-DAVLWTSMIDGFVKNG 256

Query: 602 NIDLGIQA 609
           +    + A
Sbjct: 257 DFKKALTA 264


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 274/816 (33%), Positives = 420/816 (51%), Gaps = 138/816 (16%)

Query: 65  KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
           KL++ +     +P  D +   +LI  YS S++   A  +F       RD V Y+++I+ +
Sbjct: 72  KLLHHKLTTSNLPL-DTLLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCF 130

Query: 125 SHNSNGHAAIELFRDMR-RDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGL 183
           ++N N   A+E+F  +  +D V P+ + FT+V+ A          C++      K+G  L
Sbjct: 131 ANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRA----------CLKG--GFFKTGLCL 178

Query: 184 FTSVLNA------------LISVYVK-CVSSPFVSSRSLMGAARR--------------- 215
           F  VL              LI ++VK C  +   S+R +    R                
Sbjct: 179 FGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQ 238

Query: 216 ---------VFDEM-------PERDEL--------------------SWT---------- 229
                    +F EM       P+R  L                    SW           
Sbjct: 239 YGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLC 298

Query: 230 ---TMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH----------RELKMLML 276
              +++  Y K   +  AR+  DGM E+  ++W AL++GYV           R    ++L
Sbjct: 299 VGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLL 358

Query: 277 R--IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
           +  +  + FT++ V+ ACA+   F  G+QVH   ++                        
Sbjct: 359 QGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKL----------------------- 395

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
                       +   D V  N ++S Y  +G ++ A+  F+ + E+NL+S TV+     
Sbjct: 396 -----------GLSAIDCVG-NGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNV 443

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
           ++        L  ++   G     + +A  ++  A +G +  G Q+HA +V  G+ + LS
Sbjct: 444 KDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLS 503

Query: 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
             NALI+MY++CG  EAA  VFN M + + ++W ++I    +HG  ++A+EL+  ML+ G
Sbjct: 504 VNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETG 563

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
           + P+ +T++ VLSAC+H GL+ E  ++F +M   +GI P  +HYA  +DLL R+G  SEA
Sbjct: 564 VKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEA 623

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL 634
            + I+S+PF   A +W   L  CR+H N  LG  AA+ + +  PH   TY+LLSN+YA  
Sbjct: 624 IEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDPATYILLSNLYATE 683

Query: 635 GRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEM 694
           GRW+D A +RK M+ + + KE G SWIEV+N+VH F V DT HP+AQ +Y+ L++L L++
Sbjct: 684 GRWEDVAAIRKNMKQKQITKEAGSSWIEVENQVHKFHVGDTLHPKAQQIYEKLDELALKI 743

Query: 695 RKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCH 754
           + +GYVP+T FVLHD+E +QKE  L  HSEKLAVAF L+  P    +RV KNLR+CGDCH
Sbjct: 744 KNVGYVPNTDFVLHDVEDEQKEQYLFQHSEKLAVAFALISTPNPKPIRVFKNLRVCGDCH 803

Query: 755 NAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            A K++S V GREIVVRD  RFHH +DG CSC DYW
Sbjct: 804 TAIKYISMVSGREIVVRDANRFHHMKDGTCSCNDYW 839



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 111/468 (23%), Positives = 210/468 (44%), Gaps = 78/468 (16%)

Query: 41  MISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQP----DIVARTTLIAAYSASDN 96
           ++SSG+ P    +  LI +  +   L   + L   + +     D+    +L+  Y+    
Sbjct: 253 LVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGL 312

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA--AIELFRDMR-RDDVKPDNFTFT 153
           V+ AR++F+   ++  + + + A++  Y     G+   A+ +F +M  +  V P+ FTF+
Sbjct: 313 VQEARKVFD--GMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFS 370

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
            VL A A + + +    Q+H   +K G      V N L+SVY K       S R  M +A
Sbjct: 371 GVLKACASLPDFDFG-EQVHGQTIKLGLSAIDCVGNGLVSVYAK-------SGR--MESA 420

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           R+ FD + E++ +S T +    VK+  L++ ++ LD   E VG       SG        
Sbjct: 421 RKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQD-LDREVEYVG-------SG-------- 464

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
                 +  FTY S++S  A  G    G+Q+HA +++   +      L VNNAL+++Y K
Sbjct: 465 ------VSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRT----DLSVNNALISMYSK 514

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
           CG    A  +FN M + ++++W +I++ +                               
Sbjct: 515 CGNKEAALQVFNDMEDCNVITWTSIINGF------------------------------- 543

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG-RQLHAQLVHSGYDSS 452
           A++G+  + L+LF  M   G KP D  +   +++C+ +G ++   +   +   + G    
Sbjct: 544 AKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPR 603

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
           +     ++ +  R G++  A    N+MP + D++ W   + +   H N
Sbjct: 604 MEHYACMVDLLGRSGLLSEAIEFINSMPFDADALVWRTFLGSCRVHRN 651



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV--DSVSWNAMIAAL 494
           G+ LH +L  S         N+LIT+Y++      A  +F +M N   D VS++++I+  
Sbjct: 71  GKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCF 130

Query: 495 GQHGNGARAIELYEQ-MLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
             + N  +A+E+++Q +L++G+ P+   F  V+ AC   G  K G   F
Sbjct: 131 ANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLF 179


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 277/789 (35%), Positives = 423/789 (53%), Gaps = 120/789 (15%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + D+     L+  YS    +  AR++F++ P+  RD V +N++I+ YS +     A+E++
Sbjct: 138 ESDLYVGNALVDMYSRMGLLSRARQVFDEMPV--RDLVSWNSLISGYSSHGYYEEALEIY 195

Query: 138 RDMRRDDVKPDNFTFTSVLSALA--LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
            ++R   + PD+FT +SVL A A  L+V   KQ   +H   +KSG    + V N L+++Y
Sbjct: 196 HELRNSWIVPDSFTVSSVLPAFANLLVV---KQGQGLHGFTLKSGVNSVSVVNNGLLAMY 252

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL-DAAREFLDGMSEN 254
           +K  S P          ARRVFDEM  RD +++ TM+ GY+K + + ++ + FL+ + + 
Sbjct: 253 LK-FSRP--------TDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLENLDQ- 302

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
                                   + D  T TSV+ AC +     L K ++ Y+LR    
Sbjct: 303 -----------------------FKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRA--- 336

Query: 315 PTPEFSL--PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
               F L   V N L+ +Y KCG +  ARD+FN M  +D VSWN+I+S Y+ +G + EA 
Sbjct: 337 ---GFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAM 393

Query: 373 SLFEAM----RERNLLSWTVMIS------------GLAQNGY------------------ 398
            LF+ M     + + +++ ++IS            GL  NG                   
Sbjct: 394 KLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKSGIYIDLSVSNALIDMY 453

Query: 399 ---GEEG--LKLF-------------------------------SQMRLEGFKPCDYAFA 422
              GE G  LK+F                               +QMR     P    F 
Sbjct: 454 AKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMATFL 513

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
             +  CA L A   G+++H  L+  GY+S L  GNALI MY++CG +E++  VF  M   
Sbjct: 514 VTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLESSFRVFERMSRR 573

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
           D V+W  MI A G +G G +A+E +  M K GI+PD + F+ ++ AC+H+GLV++G   F
Sbjct: 574 DVVTWTGMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACF 633

Query: 543 ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
           E M   Y I P  +HYA  +DLL R+ K S+A++ I ++P +P A IW ++L  CR  G+
Sbjct: 634 EKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIEPDASIWASVLRACRTSGD 693

Query: 603 IDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIE 662
           ++   + + ++ +L P   G  +L SN YA L +WD  + +RK +RD+ +KK PG SWIE
Sbjct: 694 METAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSVRDKHIKKNPGYSWIE 753

Query: 663 VDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDM-ESDQKEYALST 721
           +  KVHVF   D + P+++A++K LE L   M K GY+PD++ V  ++ E ++K   +  
Sbjct: 754 IGKKVHVFCSGDDSAPQSEAIHKSLEILYSLMAKEGYIPDSREVSQNLEEEEEKRRLICG 813

Query: 722 HSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRD 781
           HSE+LA+AFGL+    G  ++V+KNLR+C DCH   K +SK+VGREI+VRD  RFH F+D
Sbjct: 814 HSERLAIAFGLLNTEPGTPLQVMKNLRVCSDCHEVTKLISKIVGREILVRDANRFHLFKD 873

Query: 782 GKCSCGDYW 790
           G CSC D W
Sbjct: 874 GICSCKDRW 882



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 132/526 (25%), Positives = 244/526 (46%), Gaps = 73/526 (13%)

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ 171
           ++   +N++I A+S N     A+E +  +R   V PD +TF SV+ A A + + E   + 
Sbjct: 69  KNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDL- 127

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           ++  +++ G      V NAL+ +Y         S   L+  AR+VFDEMP RD +SW ++
Sbjct: 128 VYKQILEMGFESDLYVGNALVDMY---------SRMGLLSRARQVFDEMPVRDLVSWNSL 178

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           ++GY  + Y + A E                    ++ EL+     I  D FT +SV+ A
Sbjct: 179 ISGYSSHGYYEEALE--------------------IYHELRNSW--IVPDSFTVSSVLPA 216

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
            AN  + + G+ +H + L++           VNN L+ +Y K  +  +AR +F++M  RD
Sbjct: 217 FANLLVVKQGQGLHGFTLKSGVNSVS----VVNNGLLAMYLKFSRPTDARRVFDEMVVRD 272

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
            V++N ++  Y+   ++                               EE +K+F +  L
Sbjct: 273 SVTYNTMICGYLKLEMV-------------------------------EESVKMFLE-NL 300

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
           + FKP        + +C  L  L   + ++  ++ +G+    +  N LI +YA+CG +  
Sbjct: 301 DQFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMIT 360

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
           A  VFN+M   D+VSWN++I+   Q G+   A++L++ M+      D IT+L ++S    
Sbjct: 361 ARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTR 420

Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
              +K G+    +     GI          ID+  + G+  ++  + +S+    +   W 
Sbjct: 421 LADLKFGKG-LHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVT-WN 478

Query: 592 ALLAGCRIHGNIDLGIQAAEQLF--QLMPHHAGTYVLLSNMYANLG 635
            +++ C   G+   G+Q   Q+   +++P  A T+++   M A+L 
Sbjct: 479 TVISACVRFGDFATGLQVTTQMRKNKVVPDMA-TFLVTLPMCASLA 523



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 101/419 (24%), Positives = 178/419 (42%), Gaps = 71/419 (16%)

Query: 201 SPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWN 260
           S F +  S +   RRV    P ++   W +++  + KN +   A EF   + E+      
Sbjct: 50  SHFRAPASSLSVFRRV---SPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRES------ 100

Query: 261 ALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLF--RLGKQVHAYLLRTEAKPTPE 318
                           ++  D++T+ SVI ACA  GLF   +G  V+             
Sbjct: 101 ----------------KVSPDKYTFPSVIKACA--GLFDAEMGDLVY------------- 129

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
                                 + I     E DL   NA++  Y   GL+  A+ +F+ M
Sbjct: 130 ----------------------KQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEM 167

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
             R+L+SW  +ISG + +GY EE L+++ ++R     P  +  +  + + A L  ++ G+
Sbjct: 168 PVRDLVSWNSLISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQ 227

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
            LH   + SG +S     N L+ MY +      A  VF+ M   DSV++N MI    +  
Sbjct: 228 GLHGFTLKSGVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLE 287

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
               +++++ + L +   PD +T  +VL AC H   +   +  +  M    G        
Sbjct: 288 MVEESVKMFLENLDQ-FKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRA-GFVLESTVK 345

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
              ID+  + G    A+DV +S+  K +   W ++++G    G+    +  A +LF++M
Sbjct: 346 NILIDVYAKCGDMITARDVFNSMECKDTVS-WNSIISGYIQSGD----LMEAMKLFKMM 399



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 112/507 (22%), Positives = 209/507 (41%), Gaps = 105/507 (20%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           SLA+ ++ +M+ +GF     + N LID+Y K   ++ AR +F+ +   D V+  ++I+ Y
Sbjct: 324 SLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGY 383

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
             S ++                                   A++LF+ M   + + D+ T
Sbjct: 384 IQSGDL---------------------------------MEAMKLFKMMMIMEEQADHIT 410

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           +  ++S L+  + + K    +H   +KSG  +  SV NALI +Y KC           +G
Sbjct: 411 YLMLIS-LSTRLADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKC---------GEVG 460

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            + ++F+ M   D ++W T+++  V+        +F  G+     +  N ++        
Sbjct: 461 DSLKIFNSMGTLDTVTWNTVISACVRFG------DFATGLQVTTQMRKNKVVP------- 507

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                    D  T+   +  CA+    RLGK++H  LLR       E  L + NAL+ +Y
Sbjct: 508 ---------DMATFLVTLPMCASLAAKRLGKEIHCCLLRFGY----ESELQIGNALIEMY 554

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            KCG +  +  +F +M  RD+V+W  ++ AY                             
Sbjct: 555 SKCGCLESSFRVFERMSRRDVVTWTGMIYAY----------------------------- 585

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL-VHSGYD 450
                G GE+ L+ F  M   G  P    F   I +C+  G +E G     ++  H   D
Sbjct: 586 --GMYGEGEKALESFVDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFEKMKTHYKID 643

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQ 509
             +     ++ + +R   +  A      MP   D+  W +++ A    G+   A  +  +
Sbjct: 644 PMIEHYACVVDLLSRSQKISKAEEFIQAMPIEPDASIWASVLRACRTSGDMETAERVSRR 703

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVK 536
           +++  + PD   + ++L++  +A L K
Sbjct: 704 IIE--LNPDDPGY-SILASNAYAALRK 727



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 93/195 (47%), Gaps = 14/195 (7%)

Query: 424 AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM-PNV 482
           A++S + L  L   R++HA ++  G D S      LI  Y+      ++  VF  + P  
Sbjct: 13  ALSSSSNLNEL---RRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAK 69

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL--VKEGRR 540
           +   WN++I A  ++G   +A+E Y ++ +  + PD+ TF +V+ AC  AGL   + G  
Sbjct: 70  NVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKAC--AGLFDAEMGDL 127

Query: 541 YFETMHGPYGIPPGEDHYA--RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCR 598
            ++ +     +    D Y     +D+  R G  S A+ V D +P +     W +L++G  
Sbjct: 128 VYKQI---LEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVS-WNSLISGYS 183

Query: 599 IHGNIDLGIQAAEQL 613
            HG  +  ++   +L
Sbjct: 184 SHGYYEEALEIYHEL 198


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 245/704 (34%), Positives = 379/704 (53%), Gaps = 69/704 (9%)

Query: 87   LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
            L+  Y+   +++ A + F +T  ++ + V +N M+ AY    +   +  +FR M+ +++ 
Sbjct: 430  LLNLYAKCADIETALDYFLET--EVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIV 487

Query: 147  PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
            P+ +T+ S+L     + + E    Q+H  ++K+   L   V + LI +Y K         
Sbjct: 488  PNQYTYPSILKTCIRLGDLELG-EQIHSQIIKTNFQLNAYVCSVLIDMYAKL-------- 538

Query: 207  RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
               +  A  +      +D +SWTTM+ GY + ++ D A                      
Sbjct: 539  -GKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFR----------------- 580

Query: 267  VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                 +ML   I+ DE   T+ +SACA     + G+Q+HA    +         LP  NA
Sbjct: 581  -----QMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSS----DLPFQNA 631

Query: 327  LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
            LVTLY +CGK                               I+E+   FE     + ++W
Sbjct: 632  LVTLYSRCGK-------------------------------IEESYLAFEQTEAGDNIAW 660

Query: 387  TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
              ++SG  Q+G  EE L++F +M  EG    ++ F  A+ + +    ++ G+Q+HA +  
Sbjct: 661  NALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITK 720

Query: 447  SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
            +GYDS     NALI+MYA+CG +  A   F  +   + VSWNA+I A  +HG G+ A++ 
Sbjct: 721  TGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDS 780

Query: 507  YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
            ++QM+   + P+ +T + VLSAC+H GLV +G  YFE+M+  YG+ P  +HY   +D+L 
Sbjct: 781  FDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLT 840

Query: 567  RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626
            RAG  S AK+ I  +P KP A +W  LL+ C +H N+++G  AA  L +L P  + TYVL
Sbjct: 841  RAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVL 900

Query: 627  LSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKY 686
            LSN+YA   +WD     R+ M+++GVKKEPG SWIEV N +H F V D  HP A  +++Y
Sbjct: 901  LSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEY 960

Query: 687  LEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKN 746
             + L     ++GYV D   +L++++ +QK+  +  HSEKLA++FGL+ LP    + V+KN
Sbjct: 961  FQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKN 1020

Query: 747  LRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            LR+C DCH   KF+SKV  REI+VRD  RFHHF  G CSC DYW
Sbjct: 1021 LRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 153/577 (26%), Positives = 249/577 (43%), Gaps = 96/577 (16%)

Query: 41  MISSGFKPREHIINRLIDIYCKS-------LKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           M+S    P E   + +++  C+        ++ ++AR L+  +    +V    LI  YS 
Sbjct: 177 MVSENVTPNEGTFSGVLEA-CRGGSVAFDVVEQIHARILYQGLRDSTVVC-NPLIDLYSR 234

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
           +  V LAR +F+   L+++D   + AMI+  S N     AI LF DM    + P  + F+
Sbjct: 235 NGFVDLARRVFD--GLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFS 292

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           SVLSA   I E  +   Q+H  V+K G    T V NAL+S+Y    +         + +A
Sbjct: 293 SVLSACKKI-ESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGN---------LISA 342

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
             +F  M +RD +++ T++ G  +  Y + A E                         +M
Sbjct: 343 EHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK----------------------RM 380

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN----ALVT 329
            +  ++ D  T  S++ AC+  G    G+Q+HAY        T +     NN    AL+ 
Sbjct: 381 HLDGLEPDSNTLASLVVACSADGTLFRGQQLHAY--------TTKLGFASNNKIEGALLN 432

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           LY KC  +  A D F +    ++V WN +L AY   GL+D+ ++ F              
Sbjct: 433 LYAKCADIETALDYFLETEVENVVLWNVMLVAY---GLLDDLRNSF-------------- 475

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
                         ++F QM++E   P  Y +   + +C  LG LE G Q+H+Q++ + +
Sbjct: 476 --------------RIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNF 521

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
             +    + LI MYA+ G ++ A  +       D VSW  MIA   Q+    +A+  + Q
Sbjct: 522 QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQ 581

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
           ML  GI  D +     +SAC     +KEG++         G           + L  R G
Sbjct: 582 MLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-IHAQACVSGFSSDLPFQNALVTLYSRCG 640

Query: 570 KFSEAKDVIDSLPFKPSAP----IWEALLAGCRIHGN 602
           K  E+      L F+ +       W AL++G +  GN
Sbjct: 641 KIEESY-----LAFEQTEAGDNIAWNALVSGFQQSGN 672



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 143/622 (22%), Positives = 257/622 (41%), Gaps = 120/622 (19%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           ++S L  C     +   +   +H  ++  GF    ++ N L+ +Y     L+ A  +F  
Sbjct: 291 FSSVLSACKKIESL--EIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSN 348

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           + Q                                 RD V YN +I   S    G  A+E
Sbjct: 349 MSQ---------------------------------RDAVTYNTLINGLSQCGYGEKAME 375

Query: 136 LFRDMRRDDVKPDNFTFTSVL---SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           LF+ M  D ++PD+ T  S++   SA   +   +    Q+H    K G      +  AL+
Sbjct: 376 LFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQ----QLHAYTTKLGFASNNKIEGALL 431

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY-VKNDYLDAAREFLDGM 251
           ++Y KC           +  A   F E    + + W  M+  Y + +D  ++ R F    
Sbjct: 432 NLYAKCAD---------IETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIF---- 478

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
                               +M +  I  +++TY S++  C   G   LG+Q+H+ +++T
Sbjct: 479 -------------------RQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKT 519

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
                 + +  V + L+ +Y K GK++ A DI  +   +D+VSW  +++ Y         
Sbjct: 520 NF----QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGY--------- 566

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
                                  Q  + ++ L  F QM   G +  +     A+++CAGL
Sbjct: 567 ----------------------TQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGL 604

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
            AL+ G+Q+HAQ   SG+ S L   NAL+T+Y+RCG +E +   F      D+++WNA++
Sbjct: 605 QALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALV 664

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
           +   Q GN   A+ ++ +M +EGI  +  TF + + A +    +K+G++    +    G 
Sbjct: 665 SGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVI-TKTGY 723

Query: 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611
               +     I +  + G  S+A+     +  K     W A++     HG    G +A +
Sbjct: 724 DSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVS-WNAIINAYSKHG---FGSEALD 779

Query: 612 QLFQLM-----PHHAGTYVLLS 628
              Q++     P+H     +LS
Sbjct: 780 SFDQMIHSNVRPNHVTLVGVLS 801



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 120/468 (25%), Positives = 201/468 (42%), Gaps = 100/468 (21%)

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A +VFDEMPER   +W  M+                        +A   LI       +
Sbjct: 138 GAFKVFDEMPERTIFTWNKMIK----------------------ELASRNLIGEVFGLFV 175

Query: 272 KMLMLRIQLDEFTYTSVISAC-ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
           +M+   +  +E T++ V+ AC   S  F + +Q+HA +L    +     S  V N L+ L
Sbjct: 176 RMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRD----STVVCNPLIDL 231

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y + G V+ AR +F+ +  +D  SW A                               MI
Sbjct: 232 YSRNGFVDLARRVFDGLRLKDHSSWVA-------------------------------MI 260

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
           SGL++N    E ++LF  M + G  P  YAF+  +++C  + +LE G QLH  ++  G+ 
Sbjct: 261 SGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFS 320

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
           S     NAL+++Y   G + +A  +F+ M   D+V++N +I  L Q G G +A+EL+++M
Sbjct: 321 SDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRM 380

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
             +G+ PD  T  +++ AC+  G +  G++         G           ++L  +   
Sbjct: 381 HLDGLEPDSNTLASLVVACSADGTLFRGQQ-LHAYTTKLGFASNNKIEGALLNLYAKCAD 439

Query: 571 FSEAKD---------------------VIDSL--PFK-----------PSAPIWEALLAG 596
              A D                     ++D L   F+           P+   + ++L  
Sbjct: 440 IETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKT 499

Query: 597 CRIHGNIDLGIQAAEQL----FQLMPHHAGTYVLLSNMYANLGRWDDA 640
           C   G+++LG Q   Q+    FQL   +A    +L +MYA LG+ D A
Sbjct: 500 CIRLGDLELGEQIHSQIIKTNFQL---NAYVCSVLIDMYAKLGKLDTA 544



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 109/219 (49%), Gaps = 11/219 (5%)

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSA-----YVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           G ++E R + +Q+ +  L S N  LS      Y+  G +  A  +F+ M ER + +W  M
Sbjct: 99  GSLDEGRKLHSQILKLGLDS-NGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKM 157

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC-AGLGALENGRQLHAQLVHSG 448
           I  LA      E   LF +M  E   P +  F+G + +C  G  A +   Q+HA++++ G
Sbjct: 158 IKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQG 217

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
              S    N LI +Y+R G V+ A  VF+ +   D  SW AMI+ L ++   A AI L+ 
Sbjct: 218 LRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFC 277

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
            M   GI+P    F +VLSAC     ++ G    E +HG
Sbjct: 278 DMYVLGIMPTPYAFSSVLSACKKIESLEIG----EQLHG 312


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 250/686 (36%), Positives = 381/686 (55%), Gaps = 57/686 (8%)

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ 171
           RD V +N+MI+++S N     A+   R M  + VKPD  TF SVL A + + +  +   +
Sbjct: 179 RDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHL-DLLRTGKE 237

Query: 172 MHCTVVKSGTGLFTS-VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           +H   +++   +  S V +AL+ +Y  C           + + R VFD + +R    W  
Sbjct: 238 IHAYALRTDDVIENSFVGSALVDMYCNC---------GQVESGRLVFDSVLDRKIGLWNA 288

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           M+ GY ++++ + A      M    G+  NA                      T +S++ 
Sbjct: 289 MIAGYAQSEHDEKALMLFIEMEAAAGLYSNAT---------------------TMSSIVP 327

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           A          + +H Y++    K   E +  + NAL+ +Y + G +  ++ IF+ M +R
Sbjct: 328 AYVRCEGISRKEGIHGYVI----KRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDR 383

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           D+VSWN I+++YV  G   +A  L   M+        +         Y +E        +
Sbjct: 384 DIVSWNTIITSYVICGRSSDALLLLHEMQR-------IEEKSTYDGDYNDE--------K 428

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
              FKP        +  CA L AL  G+++HA  + +   S ++ G+AL+ MYA+CG + 
Sbjct: 429 QVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLN 488

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG-----ILPDRITFLTV 525
            A  VF+ MP  + ++WN +I A G HG G  ++EL+E M+ EG     + P  +TF+ +
Sbjct: 489 LARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIAL 548

Query: 526 LSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK- 584
            ++C+H+G+V EG   F  M   +GI P  DHYA  +DL+ RAGK  EA  +++++P   
Sbjct: 549 FASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGF 608

Query: 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVR 644
                W +LL  CRI+ NI++G  AAE L QL P  A  YVLLSN+Y++ G WD A  +R
Sbjct: 609 DKVGAWSSLLGACRIYHNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLR 668

Query: 645 KLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTK 704
           + M+  GVKKEPGCSWIE  ++VH FL  D +HP+++ ++ +LE L   ++K GYVPDT 
Sbjct: 669 RRMKAMGVKKEPGCSWIEYGDEVHKFLAGDLSHPQSEKLHDFLETLSERLKKEGYVPDTA 728

Query: 705 FVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVV 764
            VLHD++ ++KE  L  HSEKLA+AFG++  P G T+RV KNLR+C DCH A KF+SK+ 
Sbjct: 729 CVLHDIDEEEKETILCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHTASKFISKIE 788

Query: 765 GREIVVRDGKRFHHFRDGKCSCGDYW 790
            REI++RD +RFHHF+DG CSCGDYW
Sbjct: 789 DREIILRDARRFHHFKDGTCSCGDYW 814



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 133/448 (29%), Positives = 204/448 (45%), Gaps = 88/448 (19%)

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL--NALISVYVKCVSSPFV 204
           PDNF F +VL A+A I +E     Q+H  V K G G F+SV   N L+++Y KC      
Sbjct: 8   PDNFAFPAVLKAVAGI-QELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGG---- 62

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                +G A +VFD + ERD++SW ++++   + +                   W   I 
Sbjct: 63  -----LGDAYKVFDRITERDQVSWNSIISALCRFE------------------EWEVAIK 99

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACAN----SGLFRLGKQVHAYLLRTEAKPTPEFS 320
            +      MLM   +   FT  S+  AC+N     GL+ LGKQ+H    R     T  FS
Sbjct: 100 AF----RLMLMEGFEPSSFTLVSMALACSNLRKRDGLW-LGKQIHGCCFRKGHWRT--FS 152

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
              NNAL+ +Y K G++++A+ +     +RDLV+WN+                       
Sbjct: 153 ---NNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNS----------------------- 186

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
                   MIS  +QN    E L     M LEG KP    FA  + +C+ L  L  G+++
Sbjct: 187 --------MISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEI 238

Query: 441 HAQLVHSG--YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           HA  + +    ++S   G+AL+ MY  CG VE+   VF+++ +     WNAMIA   Q  
Sbjct: 239 HAYALRTDDVIENSF-VGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSE 297

Query: 499 NGARAIELYEQM-LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG--E 555
           +  +A+ L+ +M    G+  +  T  +++ A        EG    E +HG Y I  G   
Sbjct: 298 HDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRC----EGISRKEGIHG-YVIKRGLET 352

Query: 556 DHYAR--FIDLLCRAGKFSEAKDVIDSL 581
           + Y +   ID+  R G    +K + DS+
Sbjct: 353 NRYLQNALIDMYSRMGDIKTSKRIFDSM 380



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 187/435 (42%), Gaps = 66/435 (15%)

Query: 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
           D F + +V+ A A      LGKQ+HA++ +         S+ ++N LV +Y KCG + +A
Sbjct: 9   DNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFS--SVTIDNTLVNMYGKCGGLGDA 66

Query: 341 RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGE 400
             +                               F+ + ER+ +SW  +IS L +    E
Sbjct: 67  YKV-------------------------------FDRITERDQVSWNSIISALCRFEEWE 95

Query: 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGL---GALENGRQLHAQLVHSGYDSSLSAGN 457
             +K F  M +EGF+P  +       +C+ L     L  G+Q+H      G+  + S  N
Sbjct: 96  VAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKGHWRTFS-NN 154

Query: 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
           AL+ MYA+ G ++ A  +     + D V+WN+MI++  Q+     A+     M+ EG+ P
Sbjct: 155 ALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKP 214

Query: 518 DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577
           D +TF +VL AC+H  L++ G+           +       +  +D+ C  G+    + V
Sbjct: 215 DGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLV 274

Query: 578 IDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRW 637
            DS+       +W A++AG       D   + A  LF  M   AG Y   + M       
Sbjct: 275 FDSV-LDRKIGLWNAMIAG-YAQSEHD---EKALMLFIEMEAAAGLYSNATTM------- 322

Query: 638 DDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEM-RK 696
             ++ V   +R  G+ ++ G         +H +++            +YL+  +++M  +
Sbjct: 323 --SSIVPAYVRCEGISRKEG---------IHGYVI-----KRGLETNRYLQNALIDMYSR 366

Query: 697 LGYVPDTKFVLHDME 711
           +G +  +K +   ME
Sbjct: 367 MGDIKTSKRIFDSME 381



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 184/428 (42%), Gaps = 61/428 (14%)

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
           D++ +   V  + L+  Y     V+  R +F+   +  R    +NAMI  Y+ + +   A
Sbjct: 246 DDVIENSFVG-SALVDMYCNCGQVESGRLVFDS--VLDRKIGLWNAMIAGYAQSEHDEKA 302

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
           + LF +M        N T  S +    +  E   +   +H  V+K G      + NALI 
Sbjct: 303 LMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALID 362

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
           +Y         S    +  ++R+FD M +RD +SW T++T YV       A   L  M  
Sbjct: 363 MY---------SRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQR 413

Query: 254 NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
              +   +   G  + E +   +  + +  T  +V+  CA+      GK++HAY +R   
Sbjct: 414 ---IEEKSTYDGDYNDEKQ---VPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLL 467

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
                  + V +ALV +Y KCG +N AR +F+QMP R++++WN I+ AY           
Sbjct: 468 AS----QVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAY----------- 512

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG-----FKPCDYAFAGAITSC 428
                                 +G G+E L+LF  M  EG      KP +  F     SC
Sbjct: 513 --------------------GMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASC 552

Query: 429 AGLGALENGRQL-HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN-VDSV- 485
           +  G ++ G  L H      G + +      ++ +  R G VE A  + NTMP+  D V 
Sbjct: 553 SHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVG 612

Query: 486 SWNAMIAA 493
           +W++++ A
Sbjct: 613 AWSSLLGA 620



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 69/121 (57%), Gaps = 2/121 (1%)

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS--SLSAGNALITMYARCGVVE 470
           GF P ++AF   + + AG+  L  G+Q+HA +   GY S  S++  N L+ MY +CG + 
Sbjct: 5   GFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLG 64

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
            A  VF+ +   D VSWN++I+AL +      AI+ +  ML EG  P   T +++  AC+
Sbjct: 65  DAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACS 124

Query: 531 H 531
           +
Sbjct: 125 N 125



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 145/337 (43%), Gaps = 59/337 (17%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           S    +H ++I  G +   ++ N LID+Y +   +  ++ +FD +   DIV+  T+I +Y
Sbjct: 336 SRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSY 395

Query: 92  ----SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147
                +SD + L  EM      ++ +   Y+                  + D ++   KP
Sbjct: 396 VICGRSSDALLLLHEM-----QRIEEKSTYDGD----------------YNDEKQVPFKP 434

Query: 148 DNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSR 207
           ++ T  +VL   A +    K   ++H   +++      +V +AL+ +Y KC         
Sbjct: 435 NSITLMTVLPGCASLSALAKG-KEIHAYAIRNLLASQVTVGSALVDMYAKC--------- 484

Query: 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV 267
             +  ARRVFD+MP R+ ++W  ++  Y  +     + E  + M          +  G  
Sbjct: 485 GCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDM----------VAEGAK 534

Query: 268 HRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV-HAYLLRTEAKPTPEFSLPVNNA 326
             E+K         E T+ ++ ++C++SG+   G  + H        +P P+        
Sbjct: 535 GGEVKP-------TEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHY----AC 583

Query: 327 LVTLYWKCGKVNEARDIFNQMPE--RDLVSWNAILSA 361
           +V L  + GKV EA  + N MP     + +W+++L A
Sbjct: 584 IVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGA 620


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/626 (38%), Positives = 368/626 (58%), Gaps = 35/626 (5%)

Query: 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS 227
           Q  Q+H  ++++G    + VL  LI +  K V  P  S   L      VF ++   +   
Sbjct: 57  QIKQVHAHIIRNGLSQCSYVLTKLIRMLTK-VDVPMGSYPLL------VFGQVNYPNPFL 109

Query: 228 WTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTS 287
           WT M+ GY     L  +  F   M  + GV       G V               FT+++
Sbjct: 110 WTAMIRGYALQGLLSESTNFYTRMRRD-GV-------GPV--------------SFTFSA 147

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           +  AC  +    LGKQVHA  +      +    L V N+++ LY KCG +  AR +F++M
Sbjct: 148 LFKACGAALNMDLGKQVHAQTILIGGFAS---DLYVGNSMIDLYVKCGFLGCARKVFDEM 204

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
            ERD+VSW  ++ AY   G ++ A  LF+ +  +++++WT M++G AQNG  +E L+ F 
Sbjct: 205 SERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQ 264

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS--LSAGNALITMYAR 465
           +M+  G +  +   AG I++CA LGA+++   +      SG+  S  +  G+ALI MY++
Sbjct: 265 KMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSK 324

Query: 466 CGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTV 525
           CG  + A  VF  M   +  S+++MI     HG    A++L+  MLK  I P+++TF+ +
Sbjct: 325 CGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGI 384

Query: 526 LSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP 585
           LSAC+HAGLV++GR+ F  M   +G+ P  DHYA  +DLL RAG   EA D++ ++P +P
Sbjct: 385 LSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEP 444

Query: 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645
           +  +W ALL  CRIHGN D+   AA +LF+L P+  G Y+LLSN+YA+ GRW++ +++RK
Sbjct: 445 NGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRK 504

Query: 646 LMRDRGVKKEPGCSWIEVDN-KVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTK 704
           ++R++G KK PGCSW E  N ++H F   DT HP +  + + L+QL+  +R  GY P+  
Sbjct: 505 VIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLG 564

Query: 705 FVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVV 764
              +D+  D+KE  L +HSEKLA+A+GL+    G T++++KN+RIC DCHN     S++ 
Sbjct: 565 SAPYDLTDDEKERILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEIT 624

Query: 765 GREIVVRDGKRFHHFRDGKCSCGDYW 790
           GREI+VRD  RFHHF +G CSCG++W
Sbjct: 625 GREIIVRDNMRFHHFHNGTCSCGNFW 650



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 131/486 (26%), Positives = 208/486 (42%), Gaps = 98/486 (20%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLV--YARTLFDEIPQPDIVARTTLIA 89
           S  + VHAH+I +G     +++ +LI +  K    +  Y   +F ++  P          
Sbjct: 56  SQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYP---------- 105

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
                                  +   + AMI  Y+       +   +  MRRD V P +
Sbjct: 106 -----------------------NPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVS 142

Query: 150 FTFTSVLSAL--ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSR 207
           FTF+++  A   AL ++  KQ      T++  G      V N++I +YVKC         
Sbjct: 143 FTFSALFKACGAALNMDLGKQVHAQ--TILIGGFASDLYVGNSMIDLYVKC--------- 191

Query: 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV 267
             +G AR+VFDEM ERD +SWT ++  Y K   +++A    D +     VAW A+++GY 
Sbjct: 192 GFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYA 251

Query: 268 HRE---------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT-- 316
                        KM  + ++ DE T   VISACA     +LG   HA  +R  A+ +  
Sbjct: 252 QNGRPKEALEYFQKMQDVGMETDEVTLAGVISACA-----QLGAVKHANWIRDIAERSGF 306

Query: 317 -PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
            P  ++ V +AL+ +Y KCG  +EA  +F  M ER++ S+++                  
Sbjct: 307 GPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSS------------------ 348

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
                        MI G A +G     L+LF  M     +P    F G +++C+  G +E
Sbjct: 349 -------------MILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVE 395

Query: 436 NGRQLHAQLVH-SGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAA 493
            GRQL A++    G   S      ++ +  R G +E A  +  TMP   +   W A++ A
Sbjct: 396 QGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGA 455

Query: 494 LGQHGN 499
              HGN
Sbjct: 456 CRIHGN 461



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 187/393 (47%), Gaps = 50/393 (12%)

Query: 33  LARSVHAHMI-SSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           L + VHA  I   GF    ++ N +ID+Y K   L  AR +FDE+ + D+V+ T LI AY
Sbjct: 160 LGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAY 219

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
           +   +++ A  +F+  PLK  D V + AM+T Y+ N     A+E F+ M+   ++ D  T
Sbjct: 220 AKYGDMESASGLFDDLPLK--DMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVT 277

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL--NALISVYVKCVSSPFVSSRSL 209
              V+SA A +    K    +     +SG G   +V+  +ALI +Y KC  SP       
Sbjct: 278 LAGVISACAQL-GAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKC-GSP------- 328

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
              A +VF+ M ER+  S+++M+ GY  +    +A +                       
Sbjct: 329 -DEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFH-------------------- 367

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR-TEAKPTPEFSLPVNNALV 328
              ML   I+ ++ T+  ++SAC+++GL   G+Q+ A + +     P+P+        +V
Sbjct: 368 --DMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYA----CMV 421

Query: 329 TLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLID----EAKSLFEAMRERNL 383
            L  + G + EA D+   MP E +   W A+L A    G  D     A  LF+   E N 
Sbjct: 422 DLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKL--EPNG 479

Query: 384 LSWTVMISGL-AQNGYGEEGLKLFSQMRLEGFK 415
           +   +++S + A  G  EE  KL   +R +GFK
Sbjct: 480 IGNYILLSNIYASAGRWEEVSKLRKVIREKGFK 512


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/706 (34%), Positives = 380/706 (53%), Gaps = 73/706 (10%)

Query: 87   LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
            L+  Y+   +++ A + F +T  ++ + V +N M+ AY    +   +  +FR M+ +++ 
Sbjct: 390  LLNLYAKCADIETALDYFLET--EVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIV 447

Query: 147  PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
            P+ +T+ S+L     + + E    Q+H  ++K+   L   V + LI +Y K         
Sbjct: 448  PNQYTYPSILKTCIRLGDLELG-EQIHSQIIKTNFQLNAYVCSVLIDMYAKL-------- 498

Query: 207  RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
               +  A  +      +D +SWTTM+ GY + ++ D A                      
Sbjct: 499  -GKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFR----------------- 540

Query: 267  VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS--LPVN 324
                 +ML   I+ DE   T+ +SACA     + G+Q+HA            FS  LP  
Sbjct: 541  -----QMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHA------QACVSGFSSDLPFQ 589

Query: 325  NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
            NALVTLY +CGK                               I+E+   FE     + +
Sbjct: 590  NALVTLYSRCGK-------------------------------IEESYLAFEQTEAGDNI 618

Query: 385  SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
            +W  ++SG  Q+G  EE L++F +M  EG    ++ F  A+ + +    ++ G+Q+HA +
Sbjct: 619  AWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVI 678

Query: 445  VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
              +GYDS     NALI+MYA+CG +  A   F  +   + VSWNA+I A  +HG G+ A+
Sbjct: 679  TKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEAL 738

Query: 505  ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
            + ++QM+   + P+ +T + VLSAC+H GLV +G  YFE+M+  YG+ P  +HY   +D+
Sbjct: 739  DSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDM 798

Query: 565  LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624
            L RAG  S AK+ I  +P KP A +W  LL+ C +H N+++G  AA  L +L P  + TY
Sbjct: 799  LTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATY 858

Query: 625  VLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVY 684
            VLLSN+YA   +WD     R+ M+++GVKKEPG SWIEV N +H F V D  HP A  ++
Sbjct: 859  VLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIH 918

Query: 685  KYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVL 744
            +Y + L     ++GYV D   +L++++ +QK+  +  HSEKLA++FGL+ LP    + V+
Sbjct: 919  EYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVM 978

Query: 745  KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            KNLR+C DCH   KF+SKV  REI+VRD  RFHHF  G CSC DYW
Sbjct: 979  KNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1024



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 153/577 (26%), Positives = 249/577 (43%), Gaps = 96/577 (16%)

Query: 41  MISSGFKPREHIINRLIDIYCKS-------LKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           M+S    P E   + +++  C+        ++ ++AR L+  +    +V    LI  YS 
Sbjct: 137 MVSENVTPNEGTFSGVLEA-CRGGSVAFDVVEQIHARILYQGLRDSTVVC-NPLIDLYSR 194

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
           +  V LAR +F+   L+++D   + AMI+  S N     AI LF DM    + P  + F+
Sbjct: 195 NGFVDLARRVFD--GLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFS 252

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           SVLSA   I E  +   Q+H  V+K G    T V NAL+S+Y    +         + +A
Sbjct: 253 SVLSACKKI-ESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGN---------LISA 302

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
             +F  M +RD +++ T++ G  +  Y + A E                         +M
Sbjct: 303 EHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK----------------------RM 340

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN----ALVT 329
            +  ++ D  T  S++ AC+  G    G+Q+HAY        T +     NN    AL+ 
Sbjct: 341 HLDGLEPDSNTLASLVVACSADGTLFRGQQLHAY--------TTKLGFASNNKIEGALLN 392

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           LY KC  +  A D F +    ++V WN +L AY   GL+D+ ++ F              
Sbjct: 393 LYAKCADIETALDYFLETEVENVVLWNVMLVAY---GLLDDLRNSF-------------- 435

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
                         ++F QM++E   P  Y +   + +C  LG LE G Q+H+Q++ + +
Sbjct: 436 --------------RIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNF 481

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
             +    + LI MYA+ G ++ A  +       D VSW  MIA   Q+    +A+  + Q
Sbjct: 482 QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQ 541

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
           ML  GI  D +     +SAC     +KEG++         G           + L  R G
Sbjct: 542 MLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-IHAQACVSGFSSDLPFQNALVTLYSRCG 600

Query: 570 KFSEAKDVIDSLPFKPSAP----IWEALLAGCRIHGN 602
           K  E+      L F+ +       W AL++G +  GN
Sbjct: 601 KIEESY-----LAFEQTEAGDNIAWNALVSGFQQSGN 632



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 143/622 (22%), Positives = 257/622 (41%), Gaps = 120/622 (19%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           ++S L  C     +   +   +H  ++  GF    ++ N L+ +Y     L+ A  +F  
Sbjct: 251 FSSVLSACKKIESL--EIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSN 308

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           + Q                                 RD V YN +I   S    G  A+E
Sbjct: 309 MSQ---------------------------------RDAVTYNTLINGLSQCGYGEKAME 335

Query: 136 LFRDMRRDDVKPDNFTFTSVL---SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           LF+ M  D ++PD+ T  S++   SA   +   +    Q+H    K G      +  AL+
Sbjct: 336 LFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQ----QLHAYTTKLGFASNNKIEGALL 391

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY-VKNDYLDAAREFLDGM 251
           ++Y KC           +  A   F E    + + W  M+  Y + +D  ++ R F    
Sbjct: 392 NLYAKCAD---------IETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIF---- 438

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
                               +M +  I  +++TY S++  C   G   LG+Q+H+ +++T
Sbjct: 439 -------------------RQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKT 479

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
                 + +  V + L+ +Y K GK++ A DI  +   +D+VSW  +++ Y         
Sbjct: 480 NF----QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGY--------- 526

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
                                  Q  + ++ L  F QM   G +  +     A+++CAGL
Sbjct: 527 ----------------------TQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGL 564

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
            AL+ G+Q+HAQ   SG+ S L   NAL+T+Y+RCG +E +   F      D+++WNA++
Sbjct: 565 QALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALV 624

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
           +   Q GN   A+ ++ +M +EGI  +  TF + + A +    +K+G++    +    G 
Sbjct: 625 SGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVI-TKTGY 683

Query: 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611
               +     I +  + G  S+A+     +  K     W A++     HG    G +A +
Sbjct: 684 DSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVS-WNAIINAYSKHG---FGSEALD 739

Query: 612 QLFQLM-----PHHAGTYVLLS 628
              Q++     P+H     +LS
Sbjct: 740 SFDQMIHSNVRPNHVTLVGVLS 761



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 120/468 (25%), Positives = 201/468 (42%), Gaps = 100/468 (21%)

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A +VFDEMPER   +W  M+                        +A   LI       +
Sbjct: 98  GAFKVFDEMPERTIFTWNKMIK----------------------ELASRNLIGEVFGLFV 135

Query: 272 KMLMLRIQLDEFTYTSVISAC-ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
           +M+   +  +E T++ V+ AC   S  F + +Q+HA +L    +     S  V N L+ L
Sbjct: 136 RMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRD----STVVCNPLIDL 191

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y + G V+ AR +F+ +  +D  SW A                               MI
Sbjct: 192 YSRNGFVDLARRVFDGLRLKDHSSWVA-------------------------------MI 220

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
           SGL++N    E ++LF  M + G  P  YAF+  +++C  + +LE G QLH  ++  G+ 
Sbjct: 221 SGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFS 280

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
           S     NAL+++Y   G + +A  +F+ M   D+V++N +I  L Q G G +A+EL+++M
Sbjct: 281 SDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRM 340

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
             +G+ PD  T  +++ AC+  G +  G++         G           ++L  +   
Sbjct: 341 HLDGLEPDSNTLASLVVACSADGTLFRGQQ-LHAYTTKLGFASNNKIEGALLNLYAKCAD 399

Query: 571 FSEAKD---------------------VIDSL--PFK-----------PSAPIWEALLAG 596
              A D                     ++D L   F+           P+   + ++L  
Sbjct: 400 IETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKT 459

Query: 597 CRIHGNIDLGIQAAEQL----FQLMPHHAGTYVLLSNMYANLGRWDDA 640
           C   G+++LG Q   Q+    FQL   +A    +L +MYA LG+ D A
Sbjct: 460 CIRLGDLELGEQIHSQIIKTNFQL---NAYVCSVLIDMYAKLGKLDTA 504



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 109/219 (49%), Gaps = 11/219 (5%)

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSA-----YVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           G ++E R + +Q+ +  L S N  LS      Y+  G +  A  +F+ M ER + +W  M
Sbjct: 59  GSLDEGRKLHSQILKLGLDS-NGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKM 117

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC-AGLGALENGRQLHAQLVHSG 448
           I  LA      E   LF +M  E   P +  F+G + +C  G  A +   Q+HA++++ G
Sbjct: 118 IKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQG 177

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
              S    N LI +Y+R G V+ A  VF+ +   D  SW AMI+ L ++   A AI L+ 
Sbjct: 178 LRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFC 237

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
            M   GI+P    F +VLSAC     ++ G    E +HG
Sbjct: 238 DMYVLGIMPTPYAFSSVLSACKKIESLEIG----EQLHG 272


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 262/725 (36%), Positives = 390/725 (53%), Gaps = 80/725 (11%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE-- 135
           Q D+   T L+  Y     +  A  +F   P   RD V +NAM+  Y+H+   H A+   
Sbjct: 42  QADLFVSTALLDMYVKCACLPDAAHIFATMP--ARDLVAWNAMLAGYAHHGMYHHAVAHL 99

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVK--------SGTGLFTSV 187
           L   M+   ++P+  T  ++L  LA       Q   +H   ++        S + L   V
Sbjct: 100 LSMQMQMHRLRPNASTLVALLPLLAQ-QGALAQGTSVHAYCIRACLHPNRNSKSKLTDGV 158

Query: 188 L--NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245
           L   AL+ +Y KC S  +         ARRVFD MP R+E++W+ ++ G+V    +  A 
Sbjct: 159 LLGTALLDMYAKCGSLLY---------ARRVFDAMPARNEVTWSALIGGFVLCSRMTQAF 209

Query: 246 EFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
                M    G+ +                    L   +  S + ACA+    R+G+Q+H
Sbjct: 210 LLFKAMLAQ-GLCF--------------------LSPTSIASALRACASLDHLRMGEQLH 248

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365
           A L ++                                       DL + N++LS Y  A
Sbjct: 249 ALLAKSGVHA-----------------------------------DLTAGNSLLSMYAKA 273

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425
           GLID+A +LF+ M  ++ +S++ ++SG  QNG  EE   +F +M+    +P        I
Sbjct: 274 GLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLI 333

Query: 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV 485
            +C+ L AL++GR  H  ++  G  S  S  NALI MYA+CG ++ +  VFN MP+ D V
Sbjct: 334 PACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIV 393

Query: 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETM 545
           SWN MIA  G HG G  A  L+ +M   G  PD +TF+ +LSAC+H+GLV EG+ +F  M
Sbjct: 394 SWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVM 453

Query: 546 HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDL 605
              YG+ P  +HY   +DLL R G   EA + I S+P +    +W ALL  CR++ NIDL
Sbjct: 454 GHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDL 513

Query: 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDN 665
           G + +  + +L P   G +VLLSN+Y+  GR+D+AA VR + + +G KK PGCSWIE++ 
Sbjct: 514 GKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEING 573

Query: 666 KVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEK 725
            +H F+  D +HP++  +Y+ L+ +++ ++KLGY PDT FVL D+E ++KE AL  HSEK
Sbjct: 574 SLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEK 633

Query: 726 LAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCS 785
           LA+A+G++ L    T+ V KNLR+CGDCH   K +S V  R I+VRD  RFHHF++G+CS
Sbjct: 634 LAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCS 693

Query: 786 CGDYW 790
           CGD+W
Sbjct: 694 CGDFW 698



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 88/197 (44%), Gaps = 22/197 (11%)

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P +Y F  A+ +C+ L     GR +H   +H+G  + L    AL+ MY +C  +  A  +
Sbjct: 8   PNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHI 67

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIE--LYEQMLKEGILPDRITFLTVLSACNHAG 533
           F TMP  D V+WNAM+A    HG    A+   L  QM    + P+  T + +L      G
Sbjct: 68  FATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQG 127

Query: 534 LVKEGRRYFETMHGPYGI----PPGEDHYAR----------FIDLLCRAGKFSEAKDVID 579
            + +G     ++H  Y I     P  +  ++           +D+  + G    A+ V D
Sbjct: 128 ALAQG----TSVHA-YCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFD 182

Query: 580 SLPFKPSAPIWEALLAG 596
           ++P +     W AL+ G
Sbjct: 183 AMPARNEV-TWSALIGG 198



 Score = 46.2 bits (108), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 15/111 (13%)

Query: 28  PITSSLA-----RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIV 82
           P  S LA     R  H  +I  G      I N LID+Y K  ++  +R +F+ +P  DIV
Sbjct: 334 PACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIV 393

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMR------DTVFYNAMITAYSHN 127
           +  T+IA Y      K A  +F    L+M       D V +  +++A SH+
Sbjct: 394 SWNTMIAGYGIHGLGKEATALF----LEMNNLGFPPDGVTFICLLSACSHS 440


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 269/722 (37%), Positives = 389/722 (53%), Gaps = 89/722 (12%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D V  T +I  YS   +   +R +F+K  L+ ++   +NA+++AY+ N     A+ +F +
Sbjct: 140 DFVLNTRIITMYSMCGSPSDSRMVFDK--LRRKNLFQWNAIVSAYTRNELFEDAMSIFSE 197

Query: 140 M-RRDDVKPDNFTFTSVLSALALIVEEE-KQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           +    + KPDNFT   V+ A A +++    Q +    T +   + +F  V NALI++Y K
Sbjct: 198 LISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVF--VGNALIAMYGK 255

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C     V       A +RVFD M  +   SW                             
Sbjct: 256 C---GLVEE-----AVKRVFDLMDTKTVSSW----------------------------- 278

Query: 258 AWNALISGYVHRE--LKMLMLRIQL-------DEFTYTSVISACANSGLFRLGKQVHAYL 308
             NAL+ GY       K L L +Q+       D FT  S++ AC+       G+++H + 
Sbjct: 279 --NALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFA 336

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
           LR      P   +    +L++LY  CGK   A                            
Sbjct: 337 LRNGLAVDPFIGI----SLLSLYICCGKPFAA---------------------------- 364

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
              + LF+ M  R+L+SW VMI+G +QNG  +E + LF QM  +G +P + A      +C
Sbjct: 365 ---QVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGAC 421

Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
           + L AL  G++LH   + +     +   +++I MYA+ G +  +  +F+ +   D  SWN
Sbjct: 422 SQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWN 481

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP 548
            +IA  G HG G  A+EL+E+ML+ G+ PD  TF  +L AC+HAGLV++G  YF  M   
Sbjct: 482 VIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNL 541

Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
           + I P  +HY   +D+L RAG+  +A  +I+ +P  P + IW +LL+ CRIHGN+ LG +
Sbjct: 542 HNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEK 601

Query: 609 AAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVH 668
            A +L +L P     YVL+SN++A  G+WDD  RVR  M+D G++K+ GCSWIEV  KVH
Sbjct: 602 VANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVH 661

Query: 669 VFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAV 728
            FL+ D   PE + V +   +L +++  +GY PDT  VLHD+E + K   L  HSEKLA+
Sbjct: 662 NFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAI 721

Query: 729 AFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788
           +FGL+    G  VRV KNLRICGDCHNA KF+SKVV R+IVVRD KRFHHFRDG CSCGD
Sbjct: 722 SFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGD 781

Query: 789 YW 790
           YW
Sbjct: 782 YW 783



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 127/487 (26%), Positives = 203/487 (41%), Gaps = 76/487 (15%)

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC---MQMHCTVVKSGTGLFTSVLNA-LI 192
           F     DDV  D+   +  +  L     + K      ++H  V  S       VLN  +I
Sbjct: 89  FLQRESDDVVLDSAQRSEAMGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRII 148

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
           ++Y  C  SP          +R VFD++  ++   W  +++ Y +N+       F D MS
Sbjct: 149 TMYSMC-GSP--------SDSRMVFDKLRRKNLFQWNAIVSAYTRNEL------FEDAMS 193

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
                 ++ LIS   H+           D FT   VI ACA      LG+ +H    + +
Sbjct: 194 -----IFSELISVTEHKP----------DNFTLPCVIKACAGLLDLGLGQIIHGMATKMD 238

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEA-RDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
                   + V NAL+ +Y KCG V EA + +F+ M  + + SWNA+L  Y         
Sbjct: 239 LVS----DVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGY--------- 285

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
                                 AQN    + L L+ QM   G  P  +     + +C+ +
Sbjct: 286 ----------------------AQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRM 323

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
            +L  G ++H   + +G       G +L+++Y  CG   AA  +F+ M +   VSWN MI
Sbjct: 324 KSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMI 383

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
           A   Q+G    AI L+ QML +GI P  I  + V  AC+    ++ G+   E        
Sbjct: 384 AGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGK---ELHCFALKA 440

Query: 552 PPGEDHY--ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609
              ED +  +  ID+  + G    ++ + D L  K  A  W  ++AG  IHG     ++ 
Sbjct: 441 HLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVAS-WNVIIAGYGIHGRGKEALEL 499

Query: 610 AEQLFQL 616
            E++ +L
Sbjct: 500 FEKMLRL 506



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 147/348 (42%), Gaps = 52/348 (14%)

Query: 21  QLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKL------VYARTLFD 74
           Q  DPR       A  ++  M  SG  P    I  L+ + C  +K       ++   L +
Sbjct: 287 QNSDPRK------ALDLYLQMTDSGLDPDWFTIGSLL-LACSRMKSLHYGEEIHGFALRN 339

Query: 75  EIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAI 134
            +     +   +L++ Y        A+ +F+   ++ R  V +N MI  YS N     AI
Sbjct: 340 GLAVDPFIG-ISLLSLYICCGKPFAAQVLFDG--MEHRSLVSWNVMIAGYSQNGLPDEAI 396

Query: 135 ELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
            LFR M  D ++P       V  A + +    +   ++HC  +K+       V +++I +
Sbjct: 397 NLFRQMLSDGIQPYEIAIMCVCGACSQL-SALRLGKELHCFALKAHLTEDIFVSSSIIDM 455

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           Y K            +G ++R+FD + E+D  SW  ++ GY  +     A E  +     
Sbjct: 456 YAK---------GGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFE----- 501

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
                            KML L ++ D+FT+T ++ AC+++GL   G +    +L     
Sbjct: 502 -----------------KMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLH-- 542

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
              E  L     +V +  + G++++A  +  +MP + D   W+++LS+
Sbjct: 543 -NIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSS 589


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 274/792 (34%), Positives = 403/792 (50%), Gaps = 105/792 (13%)

Query: 1   MMMKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIY 60
           M++    ++  +A    + L +C     I   +A  VH   +  G      + N LID+Y
Sbjct: 193 MLVGEESFVPDVAT-LVTVLPVCAGEEDIEKGMA--VHGLAVKLGLNEELMVNNSLIDMY 249

Query: 61  CKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAM 120
            K   L  A+ LFD+  + +IV+                                 +N+M
Sbjct: 250 SKCRFLSEAQLLFDKNDKKNIVS---------------------------------WNSM 276

Query: 121 ITAYSHNSNGHAAIELFRDMRRDD--VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVK 178
           I  Y+   +      L + M+ +D  +K D FT  +VL  + L   E +   ++H    +
Sbjct: 277 IGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVL-PVCLERSELQSLKELHGYSWR 335

Query: 179 SGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKN 238
            G      V NA I+ Y +C           + ++ RVFD M  +   SW  ++ GY +N
Sbjct: 336 HGLQSNELVANAFIAAYTRC---------GALCSSERVFDLMDTKTVSSWNALLCGYAQN 386

Query: 239 DYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLF 298
                 R+ LD                     L+M    +  D FT  S++ AC+     
Sbjct: 387 S---DPRKALD-------------------LYLQMTDSGLDPDWFTIGSLLLACSRMKSL 424

Query: 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAI 358
             G+++H + LR      P   +    +L++LY  CGK   A                  
Sbjct: 425 HYGEEIHGFALRNGLAVDPFIGI----SLLSLYICCGKPFAA------------------ 462

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
                        + LF+ M  R+L+SW VMI+G +QNG  +E + LF QM  +G +P +
Sbjct: 463 -------------QVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYE 509

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478
            A      +C+ L AL  G++LH   + +     +   +++I MYA+ G +  +  +F+ 
Sbjct: 510 IAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDR 569

Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG 538
           +   D  SWN +IA  G HG G  A+EL+E+ML+ G+ PD  TF  +L AC+HAGLV++G
Sbjct: 570 LREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDG 629

Query: 539 RRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCR 598
             YF  M   + I P  +HY   +D+L RAG+  +A  +I+ +P  P + IW +LL+ CR
Sbjct: 630 LEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCR 689

Query: 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGC 658
           IHGN+ LG + A +L +L P     YVL+SN++A  G+WDD  RVR  M+D G++K+ GC
Sbjct: 690 IHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGC 749

Query: 659 SWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYA 718
           SWIEV  KVH FL+ D   PE + V +   +L +++  +GY PDT  VLHD+E + K   
Sbjct: 750 SWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGI 809

Query: 719 LSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHH 778
           L  HSEKLA++FGL+    G  VRV KNLRICGDCHNA KF+SKVV R+IVVRD KRFHH
Sbjct: 810 LRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHH 869

Query: 779 FRDGKCSCGDYW 790
           FRDG CSCGDYW
Sbjct: 870 FRDGICSCGDYW 881



 Score =  166 bits (421), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 138/541 (25%), Positives = 231/541 (42%), Gaps = 75/541 (13%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+     LIA Y     V+ A ++F   P   R+ V +N++I  +S N     +   FR+
Sbjct: 135 DVFVGNALIAMYGKCGLVEEAVKVFEHMP--ERNLVSWNSIICGFSENGFLQESFNAFRE 192

Query: 140 M--RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           M    +   PD  T  +VL   A   + EK  M +H   VK G      V N+LI +Y K
Sbjct: 193 MLVGEESFVPDVATLVTVLPVCAGEEDIEKG-MAVHGLAVKLGLNEELMVNNSLIDMYSK 251

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C           +  A+ +FD+  +++ +SW +M+ GY + +  D  R F          
Sbjct: 252 C---------RFLSEAQLLFDKNDKKNIVSWNSMIGGYAREE--DVCRTF---------- 290

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                   Y+ ++++    +++ DEFT  +V+  C      +  K++H Y  R   +   
Sbjct: 291 --------YLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNE 342

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
                V NA +  Y +CG +  +  +F+ M  + + SWNA+L  Y               
Sbjct: 343 ----LVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGY--------------- 383

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
                           AQN    + L L+ QM   G  P  +     + +C+ + +L  G
Sbjct: 384 ----------------AQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYG 427

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
            ++H   + +G       G +L+++Y  CG   AA  +F+ M +   VSWN MIA   Q+
Sbjct: 428 EEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQN 487

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
           G    AI L+ QML +GI P  I  + V  AC+    ++ G+   E           ED 
Sbjct: 488 GLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGK---ELHCFALKAHLTEDI 544

Query: 558 Y--ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
           +  +  ID+  + G    ++ + D L  K  A  W  ++AG  IHG     ++  E++ +
Sbjct: 545 FVSSSIIDMYAKGGCIGLSQRIFDRLREKDVAS-WNVIIAGYGIHGRGKEALELFEKMLR 603

Query: 616 L 616
           L
Sbjct: 604 L 604



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 134/544 (24%), Positives = 237/544 (43%), Gaps = 84/544 (15%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D V  T +I  YS   +   +R +F+K  L+ ++   +NA+++AY+ N     A+ +F +
Sbjct: 33  DFVLNTRIITMYSMCGSPSDSRMVFDK--LRRKNLFQWNAIVSAYTRNELFEDAMSIFSE 90

Query: 140 M-RRDDVKPDNFTFTSVLSALALIVEEE-KQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           +    + KPDNFT   V+ A A +++    Q +    T +   + +F  V NALI++Y K
Sbjct: 91  LISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVF--VGNALIAMYGK 148

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL----DAAREFLDGMSE 253
           C          L+  A +VF+ MPER+ +SW +++ G+ +N +L    +A RE L G   
Sbjct: 149 C---------GLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEES 199

Query: 254 NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
            V                         D  T  +V+  CA       G  VH   ++   
Sbjct: 200 FVP------------------------DVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGL 235

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
                  L VNN+L+ +Y KC  ++EA+ +F++  ++++VSWN+++  Y     +     
Sbjct: 236 NE----ELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFY 291

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
           L + M+  +                        ++M+ +     ++     +  C     
Sbjct: 292 LLQKMQTED------------------------AKMKAD-----EFTILNVLPVCLERSE 322

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
           L++ ++LH      G  S+    NA I  Y RCG + ++  VF+ M      SWNA++  
Sbjct: 323 LQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCG 382

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG---PYG 550
             Q+ +  +A++LY QM   G+ PD  T  ++L AC+      +   Y E +HG     G
Sbjct: 383 YAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRM----KSLHYGEEIHGFALRNG 438

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
           +          + L    GK   A+ + D +  + S   W  ++AG   +G  D  I   
Sbjct: 439 LAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHR-SLVSWNVMIAGYSQNGLPDEAINLF 497

Query: 611 EQLF 614
            Q+ 
Sbjct: 498 RQML 501



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 142/314 (45%), Gaps = 43/314 (13%)

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           ++ AC       +G+++H  ++    +   +F L  N  ++T+Y  CG  +++R +F+++
Sbjct: 4   LLQACGQRKDIEVGRRLHE-MVSASTQFCNDFVL--NTRIITMYSMCGSPSDSRMVFDKL 60

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
             ++L  WNAI+SAY    L ++A S+F  +                             
Sbjct: 61  RRKNLFQWNAIVSAYTRNELFEDAMSIFSEL----------------------------- 91

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467
            + +   KP ++     I +CAGL  L  G+ +H         S +  GNALI MY +CG
Sbjct: 92  -ISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCG 150

Query: 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML--KEGILPDRITFLTV 525
           +VE A  VF  MP  + VSWN++I    ++G    +   + +ML  +E  +PD  T +TV
Sbjct: 151 LVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTV 210

Query: 526 LSACNHAGLVKEGRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582
           L  C     +++G      +HG     G+          ID+  +    SEA+ + D   
Sbjct: 211 LPVCAGEEDIEKGM----AVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKND 266

Query: 583 FKPSAPIWEALLAG 596
            K +   W +++ G
Sbjct: 267 -KKNIVSWNSMIGG 279


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 256/711 (36%), Positives = 384/711 (54%), Gaps = 85/711 (11%)

Query: 85  TTLIAAYSAS--DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR 142
           + L+A YS    +++  AR +F++  ++ R  + +N +I  Y  N   H  I LF ++  
Sbjct: 49  SRLLALYSDPKINDLGYARSIFDR--IQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVH 106

Query: 143 DDVKPDNFTFTSVLSALAL--IVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVS 200
           + + PDNFT   V+   A   +V+E KQ   +H   +K G G    V  +L+++Y KC  
Sbjct: 107 EYL-PDNFTLPCVIKGCARLGVVQEGKQ---IHGLALKIGFGSDVFVQGSLVNMYSKC-- 160

Query: 201 SPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWN 260
                                                   +D AR+  DGM +   V WN
Sbjct: 161 --------------------------------------GEIDCARKVFDGMIDKDVVLWN 182

Query: 261 ALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
           +LI GY                                R G+   A  L  E      FS
Sbjct: 183 SLIDGYA-------------------------------RCGEIDIALQLFEEMPERDAFS 211

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
             V   LV    KCGKV  AR +F+QMP R+LVSWNA+++ Y+ +G  D A  LF  M  
Sbjct: 212 WTV---LVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPI 268

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
            +L++W +MI+G   NG   + +K+F  M   G +P        +++ +GL  L  GR +
Sbjct: 269 WDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWI 328

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           H+ +  +G++     G +LI MYA+CG +E+A  VF  +       W A+I  LG HG  
Sbjct: 329 HSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMA 388

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
             A+ L+ +M K G+ P+ I F+ VL+ACNHAGLV +GR+YF+ M   Y I P  +HY  
Sbjct: 389 NHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGC 448

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
            +D+LCRAG   EAK+ I+++P  P+  IW +LL G R HG ID+G  AA+++ ++ P  
Sbjct: 449 LVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPET 508

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEA 680
            G Y+LLSNMYA  G W+  + VR++M  RG +K+PGCS +E    +H F+V D +HP+ 
Sbjct: 509 IGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQT 568

Query: 681 QAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESD-QKEYALSTHSEKLAVAFGLMKLPGGA 739
           + +Y  + ++  +++ +G+VPDT  VL  +E + +KE  L  HSE+LA+AFGL+ +  G 
Sbjct: 569 KEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLINVKPGI 628

Query: 740 TVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            +R++KNLR+C DCH+  K +SK+  REI+VRD  RFHHF++G CSC DYW
Sbjct: 629 PIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 679



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 102/468 (21%), Positives = 176/468 (37%), Gaps = 112/468 (23%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +H   +  GF     +   L+++Y K  ++  AR +FD +   D+V   +LI  Y+ 
Sbjct: 131 GKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYAR 190

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
              + +A ++F + P   RD   +  ++   S      +A +LF                
Sbjct: 191 CGEIDIALQLFEEMP--ERDAFSWTVLVDGLSKCGKVESARKLFD--------------- 233

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
                            QM C  + S         NA+I+ Y+K  S  F S       A
Sbjct: 234 -----------------QMPCRNLVS--------WNAMINGYMK--SGDFDS-------A 259

Query: 214 RRVFDEMPERDELSWTTMMTGYVKN-DYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
             +F +MP  D ++W  M+ GY  N  ++DA + F                         
Sbjct: 260 LELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMF-----------------------FM 296

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           ML L  +    T  SV+SA +   +   G+ +H+Y+     K   E    +  +L+ +Y 
Sbjct: 297 MLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYM----EKNGFELDGILGTSLIEMYA 352

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           KCG +  A  +F  + ++ +  W AI                               I G
Sbjct: 353 KCGCIESALTVFRAIQKKKVGHWTAI-------------------------------IVG 381

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDS 451
           L  +G     L LF +M   G KP    F G + +C   G +++GRQ    +++    + 
Sbjct: 382 LGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEP 441

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHG 498
           +L     L+ +  R G +E A      MP + + V W +++     HG
Sbjct: 442 TLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHG 489



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 161/367 (43%), Gaps = 41/367 (11%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
           N LID Y +  ++  A  LF+E+P+ D  + T L+   S    V+ AR++F++ P   R+
Sbjct: 182 NSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLSKCGKVESARKLFDQMPC--RN 239

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM--- 170
            V +NAMI  Y  + +  +A+ELF  M   D+   N              E   Q M   
Sbjct: 240 LVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAG--------YELNGQFMDAV 291

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMP----ERDEL 226
           +M   ++K G+    + L +++S          VS  +++G  R +   M     E D +
Sbjct: 292 KMFFMMLKLGSRPSHATLVSVLSA---------VSGLAVLGKGRWIHSYMEKNGFELDGI 342

Query: 227 SWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY-VHRE--------LKMLMLR 277
             T+++  Y K   +++A      + +     W A+I G  +H          L+M    
Sbjct: 343 LGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTG 402

Query: 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
           ++ +   +  V++AC ++GL   G+Q +  ++  E K  P  +L     LV +  + G +
Sbjct: 403 LKPNAIIFIGVLNACNHAGLVDDGRQ-YFDMMMNEYKIEP--TLEHYGCLVDILCRAGHL 459

Query: 338 NEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
            EA++    MP   + V W ++L    + G ID  +  + A R   +   T+    L  N
Sbjct: 460 EEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGE--YAAQRVIEVAPETIGCYILLSN 517

Query: 397 GYGEEGL 403
            Y   G+
Sbjct: 518 MYAASGM 524


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 239/627 (38%), Positives = 349/627 (55%), Gaps = 46/627 (7%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           ++H  ++K+G      + N L++ Y KC          L+  A ++FD +P RD ++W +
Sbjct: 24  KLHAQIIKAGLNQHEPIPNTLLNAYGKC---------GLIQDALQLFDALPRRDPVAWAS 74

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK----MLMLRIQLDEFTYT 286
           ++T                        A N  +S   HR L     +L      D F + 
Sbjct: 75  LLT------------------------ACN--LSNRPHRALSISRSLLSTGFHPDHFVFA 108

Query: 287 SVISACANSGLFRL--GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           S++ ACAN G+  +  GKQVHA   R    P  +  + V ++L+ +Y K G  +  R +F
Sbjct: 109 SLVKACANLGVLHVKQGKQVHA---RFFLSPFSDDDV-VKSSLIDMYAKFGLPDYGRAVF 164

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           + +   + +SW  ++S Y  +G   EA  LF     RNL +WT +ISGL Q+G G +   
Sbjct: 165 DSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFH 224

Query: 405 LFSQMRLEGFKPCD-YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
           LF +MR EG    D    +  + +CA L   E G+Q+H  ++  GY+S L   NALI MY
Sbjct: 225 LFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQMHGVVITLGYESCLFISNALIDMY 284

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
           A+C  + AA  +F  M   D VSW ++I    QHG    A+ LY++M+  G+ P+ +TF+
Sbjct: 285 AKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFV 344

Query: 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF 583
            ++ AC+HAGLV +GR  F TM   +GI P   HY   +DL  R+G   EA+++I ++P 
Sbjct: 345 GLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPV 404

Query: 584 KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARV 643
            P  P W ALL+ C+ HGN  + ++ A+ L  L P    +Y+LLSN+YA  G W+D ++V
Sbjct: 405 NPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKPEDPSSYILLSNIYAGAGMWEDVSKV 464

Query: 644 RKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDT 703
           RKLM     KK PG S I++    HVF   +T+HP    +   + +L  EMRK GY PDT
Sbjct: 465 RKLMMTLEAKKAPGYSCIDLGKGSHVFYAGETSHPMRDEIIGLMRELDEEMRKRGYAPDT 524

Query: 704 KFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKV 763
             VLHDM+  +KE  L  HSE+LAVA+GL+K   G  +R++KNLR+CGDCH   K +S +
Sbjct: 525 SSVLHDMDQQEKERQLFWHSERLAVAYGLLKAVPGTVIRIVKNLRVCGDCHTVLKLISAI 584

Query: 764 VGREIVVRDGKRFHHFRDGKCSCGDYW 790
             REI VRD KR+HHF+DG CSC D+W
Sbjct: 585 TNREIYVRDAKRYHHFKDGNCSCNDFW 611



 Score =  182 bits (461), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 149/515 (28%), Positives = 232/515 (45%), Gaps = 95/515 (18%)

Query: 11  TLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYAR 70
           +LA    SQL     ++P+   LA+ +HA +I +G    E I N L++ Y K   +  A 
Sbjct: 2   SLAQSLQSQLCSAARQSPL---LAKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDAL 58

Query: 71  TLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNG 130
            LFD +P+                                 RD V + +++TA + ++  
Sbjct: 59  QLFDALPR---------------------------------RDPVAWASLLTACNLSNRP 85

Query: 131 HAAIELFRDMRRDDVKPDNFTFTSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLN 189
           H A+ + R +      PD+F F S++ A A L V   KQ  Q+H     S       V +
Sbjct: 86  HRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVVKS 145

Query: 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND-YLDAAREFL 248
           +LI +Y K           L    R VFD +   + +SWTTM++GY ++    +A R F 
Sbjct: 146 SLIDMYAKF---------GLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFR 196

Query: 249 DGMSENVGVAWNALISGYV---------HRELKMLMLRIQL-DEFTYTSVISACANSGLF 298
                N+  AW ALISG V         H  ++M    I + D    +SV+ ACAN  L+
Sbjct: 197 QTPYRNL-FAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALW 255

Query: 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAI 358
            LGKQ+H  ++        E  L ++NAL+ +Y KC  +  A+ IF +M  +D+VSW +I
Sbjct: 256 ELGKQMHGVVITLGY----ESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSI 311

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
                                          I G AQ+G  EE L L+ +M L G KP +
Sbjct: 312 -------------------------------IVGTAQHGQAEEALALYDEMVLAGVKPNE 340

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFN 477
             F G I +C+  G +  GR L   +V   G   SL     L+ +++R G ++ A  +  
Sbjct: 341 VTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIR 400

Query: 478 TMP-NVDSVSWNAMIAALGQHGNGARAIELYEQML 511
           TMP N D  +W A++++  +HGN   A+ + + +L
Sbjct: 401 TMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLL 435



 Score = 99.8 bits (247), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 156/373 (41%), Gaps = 97/373 (26%)

Query: 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
           + L +   + + SA   S L  L K++HA +++           P+ N L+  Y KCG +
Sbjct: 1   MSLAQSLQSQLCSAARQSPL--LAKKLHAQIIKAGLNQHE----PIPNTLLNAYGKCGLI 54

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNG 397
            +A  +F+ +P RD V+W ++L+A   +     A S+      R+LLS            
Sbjct: 55  QDALQLFDALPRRDPVAWASLLTACNLSNRPHRALSI-----SRSLLS------------ 97

Query: 398 YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL--ENGRQLHAQLVHSGYDSSLSA 455
                          GF P  + FA  + +CA LG L  + G+Q+HA+   S +      
Sbjct: 98  --------------TGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVV 143

Query: 456 GNALITMYARCGVVEAANCVFNTMPNVDSVS----------------------------- 486
            ++LI MYA+ G+ +    VF+++ +++S+S                             
Sbjct: 144 KSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNL 203

Query: 487 --WNAMIAALGQHGNGARAIELYEQMLKEGI-LPDRITFLTVLSACNHAGLVKEGRRYFE 543
             W A+I+ L Q GNG  A  L+ +M  EGI + D +   +V+ AC +  L + G++   
Sbjct: 204 FAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQ--- 260

Query: 544 TMHGPYGIPPGE----------DHYARFIDLLCRAGKFSEA--KDVIDSLPFKPSAPIWE 591
            MHG       E          D YA+  DL+     F E   KDV+           W 
Sbjct: 261 -MHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVS----------WT 309

Query: 592 ALLAGCRIHGNID 604
           +++ G   HG  +
Sbjct: 310 SIIVGTAQHGQAE 322


>gi|302820798|ref|XP_002992065.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
 gi|300140187|gb|EFJ06914.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
          Length = 771

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 271/756 (35%), Positives = 417/756 (55%), Gaps = 68/756 (8%)

Query: 48  PREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKT 107
           P E+  + +I  Y  S ++  AR LFD +P  D      +IAAY+  + +  ARE+F+  
Sbjct: 71  PNEYSWSCIIQAYVSSSRIHDARALFDSMPGFDAFTWNIMIAAYARINRLDDARELFHGM 130

Query: 108 PLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP--DNFTFTSVLSALAL---I 162
            +  RD V +  ++  Y+ +     A  LFR M      P  D  T TSVL   A    +
Sbjct: 131 -ISGRDVVSWAILVAGYARHDRLEEASALFRRM------PLWDTVTCTSVLQGYAHNGHL 183

Query: 163 VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE 222
            E ++   ++     +  T       NA+I+ Y K          + +  A  +F ++  
Sbjct: 184 AEAQELFDRIGGAGDRDATAC-----NAMIAAYGK---------NARVDLAEGLFAQIKL 229

Query: 223 RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDE 282
           R+  SW+ ++  Y +N +LD A++  D M                           Q D 
Sbjct: 230 RNAASWSLLLLTYAQNGHLDLAKKSFDRMP--------------------------QRDS 263

Query: 283 FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARD 342
             +T++ +  ++ G  R  +++  YL            +   NAL+  Y + G ++E R 
Sbjct: 264 IAFTAMTAVLSDQGELRGAREMLRYL--------SAVDVIAWNALLEGYSRTGDLDEVRR 315

Query: 343 IFNQMPERDL---VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
           +F+ M  R +   V    +++ Y   G +D+A+ + +AM  R  +SWT MI+  AQNG  
Sbjct: 316 LFSAMEHRTVATTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNA 375

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG-YDSSLSAGNA 458
            E + LF  M LEG +P D      + SCA LG L  G+++HA++  S  +  SL   NA
Sbjct: 376 AEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPLFSQSLMLLNA 435

Query: 459 LITMYARCGVVEAANCVFNTMP--NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG-I 515
           +ITMY +CG +E A  VF ++P      V+W AMI A  Q+G G  AIEL+++M+ +G  
Sbjct: 436 VITMYGKCGNLELAREVFESVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMVIDGGT 495

Query: 516 LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA- 574
            P+R+TFL+VLSAC+H G +++   +F +M   +G+PP  DHY   +DLL RAG+  EA 
Sbjct: 496 EPNRVTFLSVLSACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAE 555

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL 634
           K ++    F+     W A L+ C+++G+++   +AA+++ +L P +    VLLSN+YA  
Sbjct: 556 KLLLRHKDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAK 615

Query: 635 GRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEM 694
           GR  D AR+R  M+  GVKK  G SWIE++N+VH F+V D +HP    +Y  LE+L  E+
Sbjct: 616 GRRADVARIRNEMKSSGVKKFAGRSWIEINNRVHEFMVSDVSHPRKLEIYSELERLHREI 675

Query: 695 RKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCH 754
           ++ GYVPDTK VL D++ ++K   L  HSE+LA+A G++  P G T+RV+KNLR+C DCH
Sbjct: 676 KEAGYVPDTKMVLRDVDEEKKAQLLGYHSERLAMALGIISTPPGTTLRVVKNLRVCSDCH 735

Query: 755 NAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            A KF+S++VGR+I+VRD  RFHHF+DG CSCGDYW
Sbjct: 736 AATKFISQIVGRQIIVRDTSRFHHFKDGVCSCGDYW 771



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 132/493 (26%), Positives = 211/493 (42%), Gaps = 67/493 (13%)

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H  + +S  G    + N LI ++ KC   P         AAR VF+ +   +E SW+ +
Sbjct: 29  LHDEIARSPHGDNRRLTNLLIDLFGKC-GDP--------DAARAVFNRVRLPNEYSWSCI 79

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH-------REL------------- 271
           +  YV +  +  AR   D M       WN +I+ Y         REL             
Sbjct: 80  IQAYVSSSRIHDARALFDSMPGFDAFTWNIMIAAYARINRLDDARELFHGMISGRDVVSW 139

Query: 272 ----------------KMLMLRIQL-DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
                             L  R+ L D  T TSV+   A++G         A  L     
Sbjct: 140 AILVAGYARHDRLEEASALFRRMPLWDTVTCTSVLQGYAHNGHL-----AEAQELFDRIG 194

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
              +      NA++  Y K  +V+ A  +F Q+  R+  SW+ +L  Y   G +D AK  
Sbjct: 195 GAGDRDATACNAMIAAYGKNARVDLAEGLFAQIKLRNAASWSLLLLTYAQNGHLDLAKKS 254

Query: 375 FEAMRERNLLSWTVMISGLAQNGY---GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
           F+ M +R+ +++T M + L+  G      E L+  S + +        A+   +   +  
Sbjct: 255 FDRMPQRDSIAFTAMTAVLSDQGELRGAREMLRYLSAVDV-------IAWNALLEGYSRT 307

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
           G L+  R+L + + H    +++ AG  L+ +Y +CG V+ A  V + MP   SVSW AMI
Sbjct: 308 GDLDEVRRLFSAMEHRTVATTVVAGT-LVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMI 366

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
           AA  Q+GN A AI L++ M  EG  P  IT ++V+ +C   G +  G+R    +      
Sbjct: 367 AAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPLF 426

Query: 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP-SAPIWEALLAGCRIHGNIDLGIQAA 610
                     I +  + G    A++V +S+P +  S   W A++   R +    +G +A 
Sbjct: 427 SQSLMLLNAVITMYGKCGNLELAREVFESVPLRTRSVVTWTAMI---RAYAQNGVGEEAI 483

Query: 611 EQLFQLMPHHAGT 623
           E LFQ M    GT
Sbjct: 484 E-LFQEMVIDGGT 495



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 169/396 (42%), Gaps = 91/396 (22%)

Query: 289 ISACANSGLFRLGKQVH-AYLLRTEAKPTPEF-SLPVNNALVTLYWKCGKVNEARDIFNQ 346
           I ACA      +G+++H A +L  E   +P   +  + N L+ L+ KCG  + AR +FN+
Sbjct: 14  IRACA------IGRKLHEAKILHDEIARSPHGDNRRLTNLLIDLFGKCGDPDAARAVFNR 67

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAM------------------------RE-- 380
           +   +  SW+ I+ AYVS+  I +A++LF++M                        RE  
Sbjct: 68  VRLPNEYSWSCIIQAYVSSSRIHDARALFDSMPGFDAFTWNIMIAAYARINRLDDARELF 127

Query: 381 ------RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
                 R+++SW ++++G A++   EE   LF +M L     C     G     A  G L
Sbjct: 128 HGMISGRDVVSWAILVAGYARHDRLEEASALFRRMPLWDTVTCTSVLQGY----AHNGHL 183

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALIT-------------------------------MY 463
              ++L  ++  +G D   +A NA+I                                 Y
Sbjct: 184 AEAQELFDRIGGAG-DRDATACNAMIAAYGKNARVDLAEGLFAQIKLRNAASWSLLLLTY 242

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN--GARAIELYEQMLKEGILPDRIT 521
           A+ G ++ A   F+ MP  DS+++ AM A L   G   GAR      +ML+     D I 
Sbjct: 243 AQNGHLDLAKKSFDRMPQRDSIAFTAMTAVLSDQGELRGAR------EMLRYLSAVDVIA 296

Query: 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581
           +  +L   +  G + E RR F  M   +            ++L  + G+  +A+ V+D++
Sbjct: 297 WNALLEGYSRTGDLDEVRRLFSAME--HRTVATTVVAGTLVNLYGKCGRVDDARRVLDAM 354

Query: 582 PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           P + S   W A++A    +GN    I     LFQ M
Sbjct: 355 PVRTSVS-WTAMIAAYAQNGNAAEAI----NLFQCM 385



 Score = 45.8 bits (107), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 112/352 (31%), Gaps = 132/352 (37%)

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN--- 477
           F   I +CA    L   + LH ++  S +  +    N LI ++ +CG  +AA  VFN   
Sbjct: 10  FEERIRACAIGRKLHEAKILHDEIARSPHGDNRRLTNLLIDLFGKCGDPDAARAVFNRVR 69

Query: 478 ----------------------------TMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
                                       +MP  D+ +WN MIAA  +      A EL+  
Sbjct: 70  LPNEYSWSCIIQAYVSSSRIHDARALFDSMPGFDAFTWNIMIAAYARINRLDDARELFHG 129

Query: 510 ML----------------------------KEGILPDRITFLTVLSACNHAGLVKEGRRY 541
           M+                            +   L D +T  +VL    H G + E +  
Sbjct: 130 MISGRDVVSWAILVAGYARHDRLEEASALFRRMPLWDTVTCTSVLQGYAHNGHLAEAQEL 189

Query: 542 FETMHG--------------PYG----IPPGEDHYARF---------IDLLCRA--GKFS 572
           F+ + G               YG    +   E  +A+          + LL  A  G   
Sbjct: 190 FDRIGGAGDRDATACNAMIAAYGKNARVDLAEGLFAQIKLRNAASWSLLLLTYAQNGHLD 249

Query: 573 EAKDVIDSLPFKPSAPI------------------------------WEALLAGCRIHGN 602
            AK   D +P + S                                 W ALL G    G+
Sbjct: 250 LAKKSFDRMPQRDSIAFTAMTAVLSDQGELRGAREMLRYLSAVDVIAWNALLEGYSRTGD 309

Query: 603 IDLGIQAAEQLFQLMPHH-------AGTYVLLSNMYANLGRWDDAARVRKLM 647
           +D       +LF  M H        AGT V   N+Y   GR DDA RV   M
Sbjct: 310 LD----EVRRLFSAMEHRTVATTVVAGTLV---NLYGKCGRVDDARRVLDAM 354


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/570 (41%), Positives = 336/570 (58%), Gaps = 48/570 (8%)

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR------ELKMLMLR--IQL 280
            T++  YVK + L+ A +  D M E   V+W  +IS Y ++      +  +LM R  ++ 
Sbjct: 94  NTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLNDKALKCLILMFREGVRP 153

Query: 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
           + FTY+SV+ AC   GL  L +Q+H  +++T                             
Sbjct: 154 NMFTYSSVLRAC--DGLPNL-RQLHCGIIKTGL--------------------------- 183

Query: 341 RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGE 400
                   E D+   +A++  Y     +D A  +F+ M  R+L+ W  +I G AQN  G 
Sbjct: 184 --------ESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGN 235

Query: 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALI 460
           E L LF +M+  GF          + +C GL  LE GRQ+H  ++   +D  L   NALI
Sbjct: 236 EALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK--FDQDLILNNALI 293

Query: 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI 520
            MY +CG +E AN  F+ M   D +SW+ M+A L Q+G   +A+EL+E M + G  P+ I
Sbjct: 294 DMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYI 353

Query: 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580
           T L VL AC+HAGLV++G  YF +M   +G+ PG +HY   IDLL RAG+  EA  +I  
Sbjct: 354 TVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHE 413

Query: 581 LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA 640
           +  +P +  W  LL  CR+H N+DL I AA+++ +L P  AGTY+LLSN+YAN  RW+D 
Sbjct: 414 MECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDV 473

Query: 641 ARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYV 700
           A VRK M +RG++K PGCSWIEVD ++HVF++ DT+HP+ + + + L  L+  +  +GYV
Sbjct: 474 AEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLNDLIERVMGVGYV 533

Query: 701 PDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFM 760
           PDT FVL D+E +QKE +L  HSEKLA+ FGLM L    TVR+ KNLRICGDCH   K +
Sbjct: 534 PDTNFVLQDLEGEQKEDSLRYHSEKLAIMFGLMNLSREKTVRIRKNLRICGDCHVFAKVV 593

Query: 761 SKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           S++  R IV+RD  R+HHF+DG CSCGDYW
Sbjct: 594 SRMEHRSIVIRDPIRYHHFQDGVCSCGDYW 623



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 128/491 (26%), Positives = 211/491 (42%), Gaps = 110/491 (22%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y+  ++ C  R  +     + VH H+   G++P+  ++N L+++Y K   L  A  LFDE
Sbjct: 58  YSELIKCCSARGAVQE--GKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDE 115

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P+ ++V+ TT                                 MI+AYS+  N   A++
Sbjct: 116 MPERNVVSWTT---------------------------------MISAYSNKLND-KALK 141

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
               M R+ V+P+ FT++SVL A     +      Q+HC ++K+G      V +ALI VY
Sbjct: 142 CLILMFREGVRPNMFTYSSVLRA----CDGLPNLRQLHCGIIKTGLESDVFVRSALIDVY 197

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
                    S  S +  A  VFDEMP RD + W +++ G+ +N   + A      M    
Sbjct: 198 ---------SKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKR-- 246

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                   +G++             D+ T TSV+ AC    L  LG+QVH ++L+ +   
Sbjct: 247 --------AGFL------------ADQATLTSVLRACTGLALLELGRQVHVHVLKFDQ-- 284

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
                L +NNAL+ +Y KCG + +A   F++M E+D++SW+ +++     G   +A  LF
Sbjct: 285 ----DLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELF 340

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
           E+M+E                                G +P      G + +C+  G +E
Sbjct: 341 ESMKE-------------------------------SGSRPNYITVLGVLFACSHAGLVE 369

Query: 436 NGRQLHAQLVH-SGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAA 493
            G      +    G D        LI +  R G ++ A  + + M    DSV+W  ++ A
Sbjct: 370 KGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGA 429

Query: 494 LGQHGNGARAI 504
              H N   AI
Sbjct: 430 CRVHRNVDLAI 440



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 32/193 (16%)

Query: 420 AFAGAIT------SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473
            FA AIT       C+  GA++ G+++H  +   GY+  +   N L+ MY +  ++E A 
Sbjct: 51  VFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAE 110

Query: 474 CVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN--- 530
            +F+ MP  + VSW  MI+A     N  +A++    M +EG+ P+  T+ +VL AC+   
Sbjct: 111 DLFDEMPERNVVSWTTMISAYSNKLND-KALKCLILMFREGVRPNMFTYSSVLRACDGLP 169

Query: 531 -----HAGLVKEGRRYFETMHGPYGIPPGEDHYAR--FIDLLCRAGKFSEAKDVIDSLPF 583
                H G++K G                 D + R   ID+  +      A  V D +P 
Sbjct: 170 NLRQLHCGIIKTGLE--------------SDVFVRSALIDVYSKWSDLDNALGVFDEMPT 215

Query: 584 KPSAPIWEALLAG 596
           +    +W +++ G
Sbjct: 216 R-DLVVWNSIIGG 227


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 211/497 (42%), Positives = 315/497 (63%), Gaps = 36/497 (7%)

Query: 330 LYWKC---GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLID----------------- 369
           +Y KC   G V+++R +F QMPE +++SW AI++AYV +G  D                 
Sbjct: 1   MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVNC 60

Query: 370 ----------------EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
                           +A+  F+ + E+NL+S+  ++ G A+N   EE   LF+++   G
Sbjct: 61  VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTG 120

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473
                + FA  ++  A +GA+  G Q+H +L+  GY S+    NALI+MY+RCG +EAA 
Sbjct: 121 IGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAF 180

Query: 474 CVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533
            VFN M + + +SW +MI    +HG   RA+E++ +ML+ G  P+ IT++ VLSAC+H G
Sbjct: 181 QVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVG 240

Query: 534 LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEAL 593
           ++ EG+++F +M+  +GI P  +HYA  +DLL R+G   EA + I+S+P    A +W  L
Sbjct: 241 MISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTL 300

Query: 594 LAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653
           L  CR+HGN +LG  AAE + +  P     Y+LLSN++A+ G+W D  ++RK M++R + 
Sbjct: 301 LGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLI 360

Query: 654 KEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESD 713
           KE GCSWIEV+N+VH F V +T+HP+A  +Y+ L+QL  +++++GY+PDT FVLHD+E +
Sbjct: 361 KEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEE 420

Query: 714 QKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDG 773
           QKE  L  HSEK+AVAFGL+       +R+ KNLR+CGDCH A K++S   GREIVVRD 
Sbjct: 421 QKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDS 480

Query: 774 KRFHHFRDGKCSCGDYW 790
            RFHH ++G CSC DYW
Sbjct: 481 NRFHHIKNGVCSCNDYW 497



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 161/378 (42%), Gaps = 87/378 (23%)

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDA---------- 243
           +Y KC +   V        +R+VF++MPE + +SWT ++T YV++   D           
Sbjct: 1   MYAKCAADGSVDD------SRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMI 54

Query: 244 -----------------------AREFLDGMSENVGVAWNALISGY---VHRELKMLMLR 277
                                  AR+  D + E   V++NA++ GY   +  E   L+  
Sbjct: 55  SASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFN 114

Query: 278 ------IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                 I +  FT+ S++S  A+ G    G+Q+H  LL+   K        + NAL+++Y
Sbjct: 115 EIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQ----CICNALISMY 170

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            +CG +  A  +FN+M +R+++SW +++                               +
Sbjct: 171 SRCGNIEAAFQVFNEMEDRNVISWTSMI-------------------------------T 199

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG-RQLHAQLVHSGYD 450
           G A++G+    L++F +M   G KP +  +   +++C+ +G +  G +  ++     G  
Sbjct: 200 GFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIV 259

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQ 509
             +     ++ +  R G++  A    N+MP   D++ W  ++ A   HGN        E 
Sbjct: 260 PRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEM 319

Query: 510 MLKEGILPDRITFLTVLS 527
           +L++   PD      +LS
Sbjct: 320 ILEQE--PDDPAAYILLS 335



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 130/278 (46%), Gaps = 38/278 (13%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
            +LI+ Y+ S  ++ AR+ F+   L  ++ V YNA++  Y+ N     A  LF ++    
Sbjct: 63  NSLISMYARSGRMEDARKAFD--ILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTG 120

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           +    FTF S+LS  A I    K   Q+H  ++K G      + NALIS+Y +C +    
Sbjct: 121 IGISAFTFASLLSGAASIGAMGKG-EQIHGRLLKGGYKSNQCICNALISMYSRCGN---- 175

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                + AA +VF+EM +R+ +SWT+M+TG+ K+ +   A E                  
Sbjct: 176 -----IEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFH--------------- 215

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
                  KML    + +E TY +V+SAC++ G+   G Q H   +  E    P   +   
Sbjct: 216 -------KMLETGTKPNEITYVAVLSACSHVGMISEG-QKHFNSMYKEHGIVPR--MEHY 265

Query: 325 NALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
             +V L  + G + EA +  N MP   D + W  +L A
Sbjct: 266 ACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGA 303



 Score = 43.5 bits (101), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
              +H  ++  G+K  + I N LI +Y +   +  A  +F+E+   ++++ T++I  ++ 
Sbjct: 144 GEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAK 203

Query: 94  SDNVKLAREMFNK---TPLKMRDTVFYNAMITAYSH 126
                 A EMF+K   T  K  + + Y A+++A SH
Sbjct: 204 HGFATRALEMFHKMLETGTKPNE-ITYVAVLSACSH 238


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 264/732 (36%), Positives = 395/732 (53%), Gaps = 60/732 (8%)

Query: 103 MFNKTPLKMRDTVFYNAMITAYSHNSNG-HAAIELFRDMRRDDVKPDNFTFTSVLSALAL 161
           +FN   L+  +T  +N ++ A+ +  N  H A+  ++       KPD++T+  +L   A 
Sbjct: 60  IFNH--LRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAA 117

Query: 162 IVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMP 221
            V E  +  Q+H   V SG      V N L+++Y  C S         +G+ARRVF+E P
Sbjct: 118 RVSE-FEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGS---------VGSARRVFEESP 167

Query: 222 ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA----------------------- 258
             D +SW T++ GYV+   ++ A    +GM E   +A                       
Sbjct: 168 VLDLVSWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNG 227

Query: 259 ----------WNALISGYVHREL--KMLMLRIQLD-------EFTYTSVISACANSGLFR 299
                     W+A++S Y   E+  + L+L +++        E    S +SAC+      
Sbjct: 228 VRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVE 287

Query: 300 LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAI 358
           +G+ VH   ++       E  + + NAL+ LY  CG++ +AR IF+   E  DL+SWN++
Sbjct: 288 MGRWVHGLAVKVGV----EDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSM 343

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
           +S Y+  G I +A+ LF +M E++++SW+ MISG AQ+    E L LF +M+L G +P +
Sbjct: 344 ISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDE 403

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478
            A   AI++C  L  L+ G+ +HA +  +    ++     LI MY +CG VE A  VF  
Sbjct: 404 TALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYA 463

Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG 538
           M      +WNA+I  L  +G+  +++ ++  M K G +P+ ITF+ VL AC H GLV +G
Sbjct: 464 MEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDG 523

Query: 539 RRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCR 598
           R YF +M   + I     HY   +DLL RAG   EA+++IDS+P  P    W ALL  CR
Sbjct: 524 RHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACR 583

Query: 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGC 658
            H + ++G +   +L QL P H G +VLLSN+YA+ G W +   +R +M   GV K PGC
Sbjct: 584 KHRDNEMGERLGRKLIQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGC 643

Query: 659 SWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYA 718
           S IE +  VH FL  D  HP+   +   L+ +  +++  GYVP T  V  D++ ++KE A
Sbjct: 644 SMIEANGTVHEFLAGDKTHPQINDIEHMLDVVAAKLKIEGYVPTTSEVSLDIDEEEKETA 703

Query: 719 LSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHH 778
           L  HSEKLAVAFGL+ +     +RV KNLRIC DCH   K +SK   R+IVVRD  RFHH
Sbjct: 704 LFRHSEKLAVAFGLITISPPTPIRVTKNLRICNDCHTVVKLISKAFDRDIVVRDRHRFHH 763

Query: 779 FRDGKCSCGDYW 790
           F+ G CSC D+W
Sbjct: 764 FKHGACSCMDFW 775



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 150/555 (27%), Positives = 254/555 (45%), Gaps = 92/555 (16%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y   LQ C  R  ++    R +HAH +SSGF    ++ N L+++Y     +  AR +F+E
Sbjct: 108 YPILLQCCAAR--VSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEE 165

Query: 76  IPQPDIVARTTLIAAYS---------------------ASDN----------VKLAREMF 104
            P  D+V+  TL+A Y                      AS++          V+ AR +F
Sbjct: 166 SPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIF 225

Query: 105 NKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE 164
           N    + RD V ++AM++ Y  N  G  A+ LF +M+   V  D     S LSA + ++ 
Sbjct: 226 NGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLN 285

Query: 165 EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE-R 223
            E     +H   VK G   + S+ NALI +Y  C           +  ARR+FD+  E  
Sbjct: 286 VEMG-RWVHGLAVKVGVEDYVSLKNALIHLYSSC---------GEIVDARRIFDDGGELL 335

Query: 224 DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL---------KML 274
           D +SW +M++GY++   +  A      M E   V+W+A+ISGY   E          +M 
Sbjct: 336 DLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQ 395

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
           +  ++ DE    S ISAC +     LGK +HAY+ R +     + ++ ++  L+ +Y KC
Sbjct: 396 LHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKL----QVNVILSTTLIDMYMKC 451

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
           G V  A ++F  M E+ + +WNA+                               I GLA
Sbjct: 452 GCVENALEVFYAMEEKGVSTWNAV-------------------------------ILGLA 480

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSL 453
            NG  E+ L +F+ M+  G  P +  F G + +C  +G + +GR     ++H    ++++
Sbjct: 481 MNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANI 540

Query: 454 SAGNALITMYARCGVVEAANCVFNTMPNV-DSVSWNAMIAALGQHGNGARAIELYEQMLK 512
                ++ +  R G+++ A  + ++MP   D  +W A++ A  +H +      L  ++++
Sbjct: 541 KHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQ 600

Query: 513 EGILPDRITFLTVLS 527
             + PD   F  +LS
Sbjct: 601 --LQPDHDGFHVLLS 613


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 269/828 (32%), Positives = 430/828 (51%), Gaps = 141/828 (17%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           +A+S+H  ++  GF    +I N LID+YC+          F+++ +              
Sbjct: 133 MAKSIHDRVLDMGFGSDLYIGNALIDMYCR----------FNDLDK-------------- 168

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                  AR++F + PL  RD V +N++I+ Y+ N   + A+E++   R   V PD++T 
Sbjct: 169 -------ARKVFEEMPL--RDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTM 219

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
           +SVL A   +   E+  + +H  + K G      V N L+S+Y  C  +  +        
Sbjct: 220 SSVLRACGGLGSVEEGDI-IHGLIEKIGIKKDVIVNNGLLSMY--CKFNGLID------- 269

Query: 213 ARRVFDEMPERDELSWTTMMTGYVK-NDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            RR+FD+M  RD +SW TM+ GY +   Y ++ + F++ +++                  
Sbjct: 270 GRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ------------------ 311

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                  + D  T TS++ AC + G    GK VH Y++ +      E     +N L+ +Y
Sbjct: 312 ------FKPDLLTITSILQACGHLGDLEFGKYVHDYMITS----GYECDTTASNILINMY 361

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR---ERNLLSWTV 388
            KCG +  ++++F+ M  +D VSWN++++ Y+  G  DEA  LF+ M+   + + +++ +
Sbjct: 362 AKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVM 421

Query: 389 MIS----------------GLAQNGY-----------------GEEG--LKLFSQM---- 409
           ++S                 LA+ G+                 GE G  LK+F  M    
Sbjct: 422 LLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARD 481

Query: 410 ---------------------------RLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
                                      R EG  P        +  C+ L A   G+++H 
Sbjct: 482 IITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHG 541

Query: 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
            +   G +S +  GN LI MY++CG +  +  VF  M   D V+W A+I+A G +G G +
Sbjct: 542 CIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKK 601

Query: 503 AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562
           A+  + +M   GI+PD + F+ ++ AC+H+GLV+EG  YF  M   Y I P  +HYA  +
Sbjct: 602 AVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVV 661

Query: 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622
           DLL R+    +A+D I S+P KP + IW ALL+ CR+ G+ ++  + +E++ +L P   G
Sbjct: 662 DLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTG 721

Query: 623 TYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQA 682
            YVL+SN+YA LG+WD    +RK ++ RG+KK+PGCSW+E+ NKV+VF        + + 
Sbjct: 722 YYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEE 781

Query: 683 VYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVR 742
           V K L  L   M K GY+ + +FVLHD++ D+K   L  HSE+LA+AFGL+    G  ++
Sbjct: 782 VNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQ 841

Query: 743 VLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           V+KNLR+C DCH   K++SK+V RE++VRD  RFH F+DG CSCGDYW
Sbjct: 842 VMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 889



 Score =  192 bits (488), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 137/498 (27%), Positives = 235/498 (47%), Gaps = 71/498 (14%)

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
            +N++I A +HN     A+ L+ + +R  ++PD +TF SV++A A +++ E     +H  
Sbjct: 82  LWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFE-MAKSIHDR 140

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
           V+  G G    + NALI +Y +          + +  AR+VF+EMP RD +SW ++++GY
Sbjct: 141 VLDMGFGSDLYIGNALIDMYCR---------FNDLDKARKVFEEMPLRDVVSWNSLISGY 191

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
             N Y + A E                   Y  R L ++      D +T +SV+ AC   
Sbjct: 192 NANGYWNEALEIY-----------------YRFRNLGVVP-----DSYTMSSVLRACGGL 229

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
           G    G  +H  + +   K      + VNN L+++Y K   + + R IF++M  RD VSW
Sbjct: 230 GSVEEGDIIHGLIEKIGIKK----DVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSW 285

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           N ++  Y   GL                                EE +KLF +M +  FK
Sbjct: 286 NTMICGYSQVGLY-------------------------------EESIKLFMEM-VNQFK 313

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P        + +C  LG LE G+ +H  ++ SGY+   +A N LI MYA+CG + A+  V
Sbjct: 314 PDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEV 373

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           F+ M   DSVSWN+MI    Q+G+   A++L+ +M+K  + PD +T++ +LS     G +
Sbjct: 374 FSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDL 432

Query: 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
             G+     +    G           +D+  + G+  ++  V +++  +     W  ++A
Sbjct: 433 HLGKELHCDL-AKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIA 490

Query: 596 GCRIHGNIDLGIQAAEQL 613
            C    + +LG++   ++
Sbjct: 491 SCVHSEDCNLGLRMISRM 508



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 174/390 (44%), Gaps = 55/390 (14%)

Query: 259 WNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
           WN++I    H  L         +   +R+Q D +T+ SVI+ACA    F + K +H  +L
Sbjct: 83  WNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVL 142

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLID 369
                      L + NAL+ +Y +          FN +                     D
Sbjct: 143 DMGFGS----DLYIGNALIDMYCR----------FNDL---------------------D 167

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
           +A+ +FE M  R+++SW  +ISG   NGY  E L+++ + R  G  P  Y  +  + +C 
Sbjct: 168 KARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACG 227

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
           GLG++E G  +H  +   G    +   N L++MY +   +     +F+ M   D+VSWN 
Sbjct: 228 GLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNT 287

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY 549
           MI    Q G    +I+L+ +M+ +   PD +T  ++L AC H G ++ G+   + M    
Sbjct: 288 MICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITS- 345

Query: 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609
           G           I++  + G    +++V   +  K S   W +++     +G+ D     
Sbjct: 346 GYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVS-WNSMINVYIQNGSFD----E 400

Query: 610 AEQLFQLMPHHAG----TYVLLSNMYANLG 635
           A +LF++M         TYV+L +M   LG
Sbjct: 401 AMKLFKMMKTDVKPDSVTYVMLLSMSTQLG 430



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 8/218 (3%)

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
           N+  W  +I  L  NG   E L L+S+ +    +P  Y F   I +CAGL   E  + +H
Sbjct: 79  NVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIH 138

Query: 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGA 501
            +++  G+ S L  GNALI MY R   ++ A  VF  MP  D VSWN++I+    +G   
Sbjct: 139 DRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWN 198

Query: 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG---PYGIPPGEDHY 558
            A+E+Y +    G++PD  T  +VL AC   G V+EG    + +HG     GI       
Sbjct: 199 EALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG----DIIHGLIEKIGIKKDVIVN 254

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
              + + C+     + + + D +  + +   W  ++ G
Sbjct: 255 NGLLSMYCKFNGLIDGRRIFDKMVLRDAVS-WNTMICG 291


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 263/714 (36%), Positives = 390/714 (54%), Gaps = 75/714 (10%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+     LI  ++ + ++  AR++FN   L  R  V +  MIT Y        A+ELF  
Sbjct: 182 DVSVGCALIDMFARNGDLVAARKVFNG--LVERTVVVWTLMITRYVQGGCAGKAVELFLG 239

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCM--QMHCTVVKSGTGLFTSVLNALISVYVK 197
           M  D  +PD +T +S++SA A   E+    +  Q+H  V++ G    T V   L+ +Y K
Sbjct: 240 MLEDGFEPDGYTMSSMVSACA---EQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTK 296

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
                 +     M  AR+VF  MP  + +SWT +++GYV+            G  EN   
Sbjct: 297 ------LQMEQSMECARKVFKRMPTHNVMSWTALISGYVQC-----------GGQEN--- 336

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
             NA     V    +ML   I+ +  TY+S++ ACAN      G+Q+HA +++T      
Sbjct: 337 --NA-----VELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGRQIHARVMKTSI---- 385

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
                            G VN              V  NA++S Y  +G ++EA+  F+ 
Sbjct: 386 -----------------GNVN--------------VVGNALVSMYAESGCMEEARKAFDQ 414

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
           + ERNLLS +   S + + G         SQ+         + FA  +++ A +G    G
Sbjct: 415 LYERNLLSTS---SDIGETGRSNASWS--SQIESMDVGVSTFTFASLLSAAATVGLPTKG 469

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV-SWNAMIAALGQ 496
           +QLHA  + +G++S     N+L++MY+RCG ++ A   F+ M +  +V SW ++I+AL +
Sbjct: 470 QQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIISALAK 529

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
           HG+  RA+ L+  M+  G+ P+ +T++ VLSAC+H GLVKEG+ YF +M   + + P  +
Sbjct: 530 HGHAERALSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQKDHRLIPRME 589

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           HYA  +DLL R+G   EA + I+ +P K  A +W+ LL  CR + NI++G  AA  +  L
Sbjct: 590 HYACMVDLLARSGLVQEALEFINEMPCKADALVWKTLLGACRTYENIEIGEIAARHVIDL 649

Query: 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTA 676
            P     YVLLSN+YA+ G WD+ AR+R LMR R + KE G SW+ V N +H F   DT+
Sbjct: 650 EPQDPAPYVLLSNLYAHGGLWDEVARIRSLMRHRNLSKETGLSWMHVGNTIHEFRAGDTS 709

Query: 677 HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLP 736
           HP AQ +Y  L  L+ E++ +GYVPDT  VLHDM    KE  L  HSEK+AVAFGL+   
Sbjct: 710 HPRAQEIYAKLAVLIREIKDIGYVPDTSIVLHDMSDKLKEQCLLQHSEKIAVAFGLITTL 769

Query: 737 GGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
               +R+ KNLR+C DCH+A K++SK  GREI++RD  RFH  +DGKCSCG+YW
Sbjct: 770 PTKPIRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRMKDGKCSCGEYW 823



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 106/209 (50%), Gaps = 3/209 (1%)

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE-RNLLSWTVMISGL 393
           G+    R +  ++ + D +  N++L+ Y   G +  A+ +F+ MR  R+L+SWT M   L
Sbjct: 62  GRALHRRLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCL 121

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC-AGLGALENGRQLHAQLVHSGY-DS 451
            +NG  +E L L  +M   G +P  +    A  +C  G     +G  +    + +G+  +
Sbjct: 122 TRNGAEQEALVLLGEMLESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWGT 181

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
            +S G ALI M+AR G + AA  VFN +     V W  MI    Q G   +A+EL+  ML
Sbjct: 182 DVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGML 241

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRR 540
           ++G  PD  T  +++SAC   G    G++
Sbjct: 242 EDGFEPDGYTMSSMVSACAEQGSAGLGQQ 270



 Score = 44.7 bits (104), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 89/226 (39%), Gaps = 56/226 (24%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +HA  I +GF+  + I N L+ +Y +   L  A   FDE+                 
Sbjct: 469 GQQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDD-------------- 514

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                              + + + ++I+A + + +   A+ LF DM    VKP++ T+ 
Sbjct: 515 ------------------HNVISWTSIISALAKHGHAERALSLFHDMILSGVKPNDVTYI 556

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSV-----LNALISVYVKCVSSPFVSSRS 208
           +VLSA +            H  +VK G   F S+     L   +  Y   V    ++   
Sbjct: 557 AVLSACS------------HVGLVKEGKEYFRSMQKDHRLIPRMEHYACMVD--LLARSG 602

Query: 209 LMGAARRVFDEMP-ERDELSWTTMMTGYVKNDYLD----AAREFLD 249
           L+  A    +EMP + D L W T++      + ++    AAR  +D
Sbjct: 603 LVQEALEFINEMPCKADALVWKTLLGACRTYENIEIGEIAARHVID 648


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 240/620 (38%), Positives = 354/620 (57%), Gaps = 67/620 (10%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           Q+H  ++KSG  +   V + LI+ Y K    P +SS        +VF+E   +   +W++
Sbjct: 75  QIHAHIIKSGLQVIPLVCHYLINFYSK-TQLPLLSS--------QVFEESERKSSTTWSS 125

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           +++ + +N+    A ++                        +M+   +  D+  + S   
Sbjct: 126 VISSFAQNEEPVLAIQYF----------------------CRMIGENLCPDDHIFPSATK 163

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           ACA  G   +GK VH  +++T      +  + V ++LV +Y KCG + EAR++F++MP R
Sbjct: 164 ACAILGRCDVGKSVHCLVIKTGY----DVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHR 219

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           ++VSW+ ++  Y                                Q G  EE ++LF +  
Sbjct: 220 NVVSWSGMIYGYT-------------------------------QLGEHEEAMRLFKEAL 248

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
           LEG    D+  +  I  C     LE G+Q+H     + YD S   G++LI++Y++CG++E
Sbjct: 249 LEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSSLISLYSKCGLIE 308

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
            A  VF+ +P  +   WNAM+ A  QH +   A +L+ +M   G+ P+ ITFL VL AC+
Sbjct: 309 GAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMRPNFITFLCVLYACS 368

Query: 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590
           HAGLV+EG++YF  M   Y I PG  HYA  +DLL RAGK  EA  VI  +P +P+  +W
Sbjct: 369 HAGLVEEGKKYFALMK-KYEIEPGTQHYASMVDLLGRAGKLQEALSVIKGMPTEPTESVW 427

Query: 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650
            A + GCRIHGN DL   AA+++F+L    +G +V+LSN YA  GR++DAA+ RK++RDR
Sbjct: 428 GAFITGCRIHGNTDLAAFAADKVFELGAVSSGLHVMLSNAYAAAGRYEDAAKARKMLRDR 487

Query: 651 GVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDM 710
           GVKKE G SWIE  N+VH F   D  H   + +Y+ LE L  EM + GYV DT FVL ++
Sbjct: 488 GVKKETGLSWIEEGNRVHKFAAGDRFHVRMKEIYQKLEDLGEEMERAGYVADTSFVLREV 547

Query: 711 ESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVV 770
            S++K   +  HSE+LA+AFGL+ +P G  +R++KNLR+CGDCHNA KF+SK+ GR I+V
Sbjct: 548 GSEEKNQTIRYHSERLAIAFGLISIPLGRPIRIMKNLRVCGDCHNAIKFISKLSGRVIIV 607

Query: 771 RDGKRFHHFRDGKCSCGDYW 790
           RD  RFH F DGKCSC DYW
Sbjct: 608 RDNNRFHRFEDGKCSCADYW 627



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/498 (24%), Positives = 219/498 (43%), Gaps = 116/498 (23%)

Query: 14  NRYASQLQ---LCDPRNPITSSLA----RSVHAHMISSGFKPREHIINRLIDIYCKSLKL 66
           NR+ S+ +   +CD     T S +    + +HAH+I SG +    + + LI+ Y K+   
Sbjct: 46  NRFCSEKKYGHICDLLLSQTRSRSLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKT--- 102

Query: 67  VYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSH 126
                   ++P                     L+ ++F ++  K   T  ++++I++++ 
Sbjct: 103 --------QLPL--------------------LSSQVFEESERKSSTT--WSSVISSFAQ 132

Query: 127 NSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC---MQMHCTVVKSGTGL 183
           N     AI+ F  M  +++ PD+  F S   A A++     +C     +HC V+K+G  +
Sbjct: 133 NEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAIL----GRCDVGKSVHCLVIKTGYDV 188

Query: 184 FTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK-NDYLD 242
              V ++L+ +Y KC           +  AR VFDEMP R+ +SW+ M+ GY +  ++ +
Sbjct: 189 DVFVGSSLVDMYAKCGD---------IKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEE 239

Query: 243 AAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGK 302
           A R F + + E + V                       ++FT +SVI  C ++ L  LGK
Sbjct: 240 AMRLFKEALLEGLDV-----------------------NDFTLSSVIRVCGSATLLELGK 276

Query: 303 QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY 362
           Q+H    +T    + + S  V ++L++LY KCG +  A  +F+++P ++L  WNA+L A 
Sbjct: 277 QIHGLCFKT----SYDLSGFVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIA- 331

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
                                          AQ+ + +E   LF++M   G +P    F 
Sbjct: 332 ------------------------------CAQHAHTKEAFDLFTKMENAGMRPNFITFL 361

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
             + +C+  G +E G++  A +     +       +++ +  R G ++ A  V   MP  
Sbjct: 362 CVLYACSHAGLVEEGKKYFALMKKYEIEPGTQHYASMVDLLGRAGKLQEALSVIKGMPTE 421

Query: 483 DSVS-WNAMIAALGQHGN 499
            + S W A I     HGN
Sbjct: 422 PTESVWGAFITGCRIHGN 439



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 104/441 (23%), Positives = 178/441 (40%), Gaps = 96/441 (21%)

Query: 7   DYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKL 66
           D+I   A +  + L  CD        + +SVH  +I +G+     + + L+D+Y K   +
Sbjct: 155 DHIFPSATKACAILGRCD--------VGKSVHCLVIKTGYDVDVFVGSSLVDMYAKCGDI 206

Query: 67  VYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSH 126
             AR +FDE+P  ++V+                                 ++ MI  Y+ 
Sbjct: 207 KEARNVFDEMPHRNVVS---------------------------------WSGMIYGYTQ 233

Query: 127 NSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL--ALIVEEEKQCMQMHCTVVKSGTGLF 184
                 A+ LF++   + +  ++FT +SV+     A ++E  K   Q+H    K+   L 
Sbjct: 234 LGEHEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGK---QIHGLCFKTSYDLS 290

Query: 185 TSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAA 244
             V ++LIS+Y KC          L+  A RVFDE+P ++   W  M+    ++ +   A
Sbjct: 291 GFVGSSLISLYSKC---------GLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEA 341

Query: 245 REFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304
            +    M EN G+  N +                     T+  V+ AC+++GL   GK+ 
Sbjct: 342 FDLFTKM-ENAGMRPNFI---------------------TFLCVLYACSHAGLVEEGKKY 379

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSAYV 363
            A + + E +P  +       ++V L  + GK+ EA  +   MP     S W A ++   
Sbjct: 380 FALMKKYEIEPGTQHY----ASMVDLLGRAGKLQEALSVIKGMPTEPTESVWGAFITGCR 435

Query: 364 SAGLIDEAKSLFEAMRERNLLS--WTVMIS-GLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
             G  D A    + + E   +S    VM+S   A  G  E+  K    +R  G K     
Sbjct: 436 IHGNTDLAAFAADKVFELGAVSSGLHVMLSNAYAAAGRYEDAAKARKMLRDRGVK----- 490

Query: 421 FAGAITSCAGLGALENGRQLH 441
                    GL  +E G ++H
Sbjct: 491 ------KETGLSWIEEGNRVH 505



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 10/168 (5%)

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
           +L  G+Q+HA ++ SG        + LI  Y++  +   ++ VF       S +W+++I+
Sbjct: 69  SLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTTWSSVIS 128

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552
           +  Q+     AI+ + +M+ E + PD   F +   AC   G    G+     +     I 
Sbjct: 129 SFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHCLV-----IK 183

Query: 553 PGED----HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
            G D      +  +D+  + G   EA++V D +P + +   W  ++ G
Sbjct: 184 TGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHR-NVVSWSGMIYG 230


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 256/756 (33%), Positives = 417/756 (55%), Gaps = 71/756 (9%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           +H  ++  G+     + N L+  Y +  +L  AR +FDE+ + ++V+ T++I  Y+  D 
Sbjct: 156 IHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDF 215

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
            K A ++F                                FR +R ++V P++ T   V+
Sbjct: 216 AKDAVDLF--------------------------------FRMVRDEEVTPNSVTMVCVI 243

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
           SA A + E+ +   +++  +  SG  +   +++AL+ +Y+KC         + +  A+R+
Sbjct: 244 SACAKL-EDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKC---------NAIDVAKRL 293

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS-ENVGVAWNALISGYVHRELKMLM 275
           FDE    +      M + YV+            G++ E +GV    + SG          
Sbjct: 294 FDEYGASNLDLCNAMASNYVRQ-----------GLTREALGVFNLMMDSG---------- 332

Query: 276 LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG 335
             ++ D  +  S IS+C+       GK  H Y+LR   +        + NAL+ +Y KC 
Sbjct: 333 --VRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDN----ICNALIDMYMKCH 386

Query: 336 KVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQ 395
           + + A  IF++M  + +V+WN+I++ YV  G +D A   FE M E+N++SW  +ISGL Q
Sbjct: 387 RQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQ 446

Query: 396 NGYGEEGLKLFSQMR-LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
               EE +++F  M+  EG            ++C  LGAL+  + ++  +  +G    + 
Sbjct: 447 GSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVR 506

Query: 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
            G  L+ M++RCG  E+A  +FN++ N D  +W A I A+   GN  RAIEL++ M+++G
Sbjct: 507 LGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQG 566

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
           + PD + F+  L+AC+H GLV++G+  F +M   +G+ P + HY   +DLL RAG   EA
Sbjct: 567 LKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEA 626

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL 634
             +I+ +P +P+  IW +LLA CR+ GN+++   AAE++  L P   G+YVLLSN+YA+ 
Sbjct: 627 VQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASA 686

Query: 635 GRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEM 694
           GRW+D A+VR  M+++G++K PG S I++  K H F   D +HPE   +   L+++    
Sbjct: 687 GRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRA 746

Query: 695 RKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCH 754
             LG+VPD   VL D++  +K + LS HSEKLA+A+GL+    G T+R++KNLR+C DCH
Sbjct: 747 SHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCH 806

Query: 755 NAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +  KF SKV  REI++RD  RFH+ R GKCSCGD+W
Sbjct: 807 SFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 146/559 (26%), Positives = 241/559 (43%), Gaps = 107/559 (19%)

Query: 61  CKSLK--LVYARTLFDEIPQPDIVARTTLIA---AYSASDNVKLAREMFNKTPLKMRDTV 115
           CK++    ++ R+L  +    D+   T L+A        +++  A+E+F  +  +   T 
Sbjct: 42  CKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENS--ESYGTC 99

Query: 116 F-YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHC 174
           F YN++I  Y+ +   + AI LF  M    + PD +TF   LSA A     +   +Q+H 
Sbjct: 100 FMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAK-SRAKGNGIQIHG 158

Query: 175 TVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTG 234
            +VK G      V N+L+  Y +C           + +AR+VFDEM ER+ +SWT+M+ G
Sbjct: 159 LIVKMGYAKDLFVQNSLVHFYAEC---------GELDSARKVFDEMSERNVVSWTSMICG 209

Query: 235 YVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACAN 294
           Y + D+   A +    M  +  V  N++                     T   VISACA 
Sbjct: 210 YARRDFAKDAVDLFFRMVRDEEVTPNSV---------------------TMVCVISACAK 248

Query: 295 SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS 354
                 G++V+A++  +      E +  + +ALV +Y KC  ++ A+ +F++    +L  
Sbjct: 249 LEDLETGEKVYAFIRNSGI----EVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDL 304

Query: 355 WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF 414
            NA+ S YV  GL  EA                               L +F+ M   G 
Sbjct: 305 CNAMASNYVRQGLTREA-------------------------------LGVFNLMMDSGV 333

Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC-------- 466
           +P   +   AI+SC+ L  +  G+  H  ++ +G++S  +  NALI MY +C        
Sbjct: 334 RPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFR 393

Query: 467 -----------------------GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
                                  G V+AA   F TMP  + VSWN +I+ L Q      A
Sbjct: 394 IFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEA 453

Query: 504 IELYEQML-KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562
           IE++  M  +EG+  D +T +++ SAC H G +   +  +  +    GI          +
Sbjct: 454 IEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIE-KNGIQLDVRLGTTLV 512

Query: 563 DLLCRAGKFSEAKDVIDSL 581
           D+  R G    A  + +SL
Sbjct: 513 DMFSRCGDPESAMSIFNSL 531



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 182/394 (46%), Gaps = 60/394 (15%)

Query: 241 LDAAREFLDGMSENVGVA--WNALISGYVH----RELKMLMLR-----IQLDEFTYTSVI 289
           L  A+E  +  SE+ G    +N+LI GY       E  +L LR     I  D++T+   +
Sbjct: 83  LSFAKEVFEN-SESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGL 141

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
           SACA S     G Q+H  ++                          K+  A+D+F Q   
Sbjct: 142 SACAKSRAKGNGIQIHGLIV--------------------------KMGYAKDLFVQ--- 172

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
                 N+++  Y   G +D A+ +F+ M ERN++SWT MI G A+  + ++ + LF +M
Sbjct: 173 ------NSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRM 226

Query: 410 -RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
            R E   P        I++CA L  LE G +++A + +SG + +    +AL+ MY +C  
Sbjct: 227 VRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNA 286

Query: 469 VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
           ++ A  +F+     +    NAM +   + G    A+ ++  M+  G+ PDRI+ L+ +S+
Sbjct: 287 IDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISS 346

Query: 529 CNHAGLVKEGRRYFETMHGPY---GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP 585
           C+    +  G+    + HG     G    ++     ID+  +  +   A  + D +  K 
Sbjct: 347 CSQLRNILWGK----SCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNK- 401

Query: 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
           +   W +++AG   +G +D    AA + F+ MP 
Sbjct: 402 TVVTWNSIVAGYVENGEVD----AAWETFETMPE 431



 Score = 86.3 bits (212), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 144/340 (42%), Gaps = 39/340 (11%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            +S H +++ +GF+  ++I N LID+Y K  +   A  +FD +    +V   +++A Y  
Sbjct: 356 GKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVE 415

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMR-RDDVKPDNFTF 152
           +  V  A E F   P K  + V +N +I+     S    AIE+F  M+ ++ V  D  T 
Sbjct: 416 NGEVDAAWETFETMPEK--NIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTM 473

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            S+ SA   +   +     ++  + K+G  L   +   L+ ++ +C             +
Sbjct: 474 MSIASACGHLGALD-LAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPE---------S 523

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A  +F+ +  RD  +WT  +         + A E  D M E                   
Sbjct: 524 AMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQ------------------ 565

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                ++ D   +   ++AC++ GL + GK++   +L+       +        +V L  
Sbjct: 566 ----GLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHY---GCMVDLLG 618

Query: 333 KCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEA 371
           + G + EA  +   MP E + V WN++L+A    G ++ A
Sbjct: 619 RAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMA 658


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 268/779 (34%), Positives = 401/779 (51%), Gaps = 106/779 (13%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           ++ A T+L+  Y    +V    E+F   P K  + V + +++T  +H       + LF  
Sbjct: 134 EVSAGTSLVDMYMKCGSVCEGIEVFEGMPKK--NVVTWTSLLTGCAHAQMHSEVMALFFR 191

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           MR + + P+ FTF SVLSA+A     +    ++H   VK G      V N+L+++Y KC 
Sbjct: 192 MRAEGIWPNPFTFASVLSAVASQGALDLG-QRVHAQSVKFGCRSSVFVCNSLMNMYAKC- 249

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                    L+  A+ VF+ M  RD +SW T+M G   N+    A +        +G   
Sbjct: 250 --------GLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMG--- 298

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                              ++ + TY +VI  CAN     L +Q+H+ +L+     T   
Sbjct: 299 -------------------KMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGN- 338

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
              V  AL   Y KCG++ +A +IF+     R++VSW AI+S  +  G I  A  LF  M
Sbjct: 339 ---VMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRM 395

Query: 379 RERNLLS-----------------------------------WTVMISGLAQNGYGEEGL 403
           RE  ++                                     T +++  ++ G  E+ L
Sbjct: 396 REDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDAL 455

Query: 404 KLF-------------------------------SQMRLEGFKPCDYAFAGAITSCAGLG 432
            +F                               ++M ++G KP ++  +  I +CA   
Sbjct: 456 SIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPS 515

Query: 433 A-LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
           A ++ GRQ HA  +   Y  ++   +AL++MY+R G +++A  VF    + D VSWN+MI
Sbjct: 516 AGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMI 575

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
           +   QHG   +AIE + QM   GI  D +TFL V+  C H GLV EG++YF++M   + I
Sbjct: 576 SGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKI 635

Query: 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611
            P  +HYA  +DL  RAGK  E   +I  +PF   A +W  LL  CR+H N++LG  +A+
Sbjct: 636 NPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSAD 695

Query: 612 QLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFL 671
           +L  L PH + TYVLLSN+YA  G+W +   VRKLM  R VKKE GCSWI++ NKVH F+
Sbjct: 696 KLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFI 755

Query: 672 VDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFG 731
             D +HP +  +YK L+ ++  +++ GY P+T FVLHD+  DQKE  L  HSE+LA+AFG
Sbjct: 756 AFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFG 815

Query: 732 LMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           L+  P G  ++++KNLR+CGDCH   K +S +  REI++RD  RFHHF  G CSCGD+W
Sbjct: 816 LIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 153/330 (46%), Gaps = 35/330 (10%)

Query: 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
           + +D  T + V+ AC +     LG+Q+H   ++       E S     +LV +Y KCG V
Sbjct: 95  VLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKC-GHDRGEVS--AGTSLVDMYMKCGSV 151

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNG 397
            E  ++F                               E M ++N+++WT +++G A   
Sbjct: 152 CEGIEVF-------------------------------EGMPKKNVVTWTSLLTGCAHAQ 180

Query: 398 YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN 457
              E + LF +MR EG  P  + FA  +++ A  GAL+ G+++HAQ V  G  SS+   N
Sbjct: 181 MHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCN 240

Query: 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
           +L+ MYA+CG+VE A  VFN M   D VSWN ++A L  +     A++L+ +        
Sbjct: 241 SLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKM 300

Query: 518 DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577
            + T+ TV+  C +   +   R+    +   +G     +      D   + G+ ++A ++
Sbjct: 301 TQSTYATVIKLCANLKQLALARQLHSCVL-KHGFHLTGNVMTALADAYSKCGELADALNI 359

Query: 578 IDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
                   +   W A+++GC  +G+I L +
Sbjct: 360 FSMTTGSRNVVSWTAIISGCIQNGDIPLAV 389



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 91/208 (43%), Gaps = 3/208 (1%)

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD-SS 452
           A+ G   E L  FS  R  G        +  + +C  +     G QLH   V  G+D   
Sbjct: 75  ARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGE 134

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           +SAG +L+ MY +CG V     VF  MP  + V+W +++         +  + L+ +M  
Sbjct: 135 VSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRA 194

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
           EGI P+  TF +VLSA    G +  G+R        +G           +++  + G   
Sbjct: 195 EGIWPNPFTFASVLSAVASQGALDLGQR-VHAQSVKFGCRSSVFVCNSLMNMYAKCGLVE 253

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIH 600
           +AK V + +  +     W  L+AG +++
Sbjct: 254 DAKSVFNWMETRDMVS-WNTLMAGLQLN 280


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 261/734 (35%), Positives = 409/734 (55%), Gaps = 83/734 (11%)

Query: 60  YCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNA 119
           + K+ +L  AR +FD+IP P++   T +IA Y+ +D +  A ++F++  + +RD V +N+
Sbjct: 22  HLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDR--MSVRDVVSWNS 79

Query: 120 MITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA---LALIVEEEKQCMQMHCTV 176
           MI       N   A  LF +M   +V     ++T++++       +   ++  + MH   
Sbjct: 80  MIKGCLDCGNLGMATRLFDEMPEKNV----ISWTTMVNGYLKFGRVELAQRLFLDMHVKD 135

Query: 177 VKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV 236
           V        +  NA++  Y       F + R   G   R+F+EMP RD +SWT+M+ G  
Sbjct: 136 V--------AAWNAMVHGY-------FENGRVEEGV--RLFEEMPVRDVISWTSMIGG-- 176

Query: 237 KNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSG 296
               LD     L+G SE     +            KML   ++    T+  V+SACAN+ 
Sbjct: 177 ----LD-----LNGKSEEALFVFK-----------KMLRSGVEPTWSTFACVLSACANAV 216

Query: 297 LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWN 356
            F LG QVH +++    K    F   ++ +L+T Y  C K+  A  IFN+   +++V W 
Sbjct: 217 EFNLGVQVHGHVV----KLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVVKWT 272

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
           A+L+AYV                      W         N   ++ L++F  M   G  P
Sbjct: 273 ALLTAYV----------------------W---------NNKHQDALRVFGDMTKMGALP 301

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
               F+  + +C GL AL+ G+++H   +  G ++ +  GN+L+ MY  CG V +A  VF
Sbjct: 302 NQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVF 361

Query: 477 NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536
             +   D VSWN++I    QHG G  A+  + QM++ G+ P+ ITF  +LSAC+ +G++ 
Sbjct: 362 RNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLL 421

Query: 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           +GR +FE +           HYA  +D+L R GK  EA++++  +P K ++ IW ALL+ 
Sbjct: 422 KGRCFFEYISRYKSNVLRPQHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSA 481

Query: 597 CRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEP 656
           CR+H N+++  +AA+ +  L P+ +  YVLLSN+YA+ GRW D +R+R  M+  G+ K+P
Sbjct: 482 CRVHSNLEVAERAAKHILDLEPNCSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVKQP 541

Query: 657 GCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKE 716
           G SW+ +  K H FL  D +HP ++ +Y+ L+ L  ++++ GYVPD KF LHD+E +QKE
Sbjct: 542 GSSWVVLRGKKHEFLSADRSHPLSERIYEKLDWLGKKLKEFGYVPDQKFALHDVEDEQKE 601

Query: 717 YALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRF 776
             LS HSE+LA+AFGL+    G+T+ V+KNLR+CGDCH+  K MSK+VGR+IVVRD  RF
Sbjct: 602 EMLSFHSERLAIAFGLVSTVEGSTITVMKNLRVCGDCHSVIKLMSKIVGRKIVVRDSGRF 661

Query: 777 HHFRDGKCSCGDYW 790
           HHF++G CSC DYW
Sbjct: 662 HHFKNGICSCSDYW 675



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 115/418 (27%), Positives = 184/418 (44%), Gaps = 42/418 (10%)

Query: 190 ALISVYVKCVSSPFVSS------RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDA 243
           A I+ Y + ++  + +S         +  AR +FD++P  +   +T M+ GY +ND L  
Sbjct: 2   AHITRYTRTITLSYTTSLANHLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCD 61

Query: 244 AREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ 303
           A +  D MS    V+WN++I G +                        C N G+      
Sbjct: 62  ALKLFDRMSVRDVVSWNSMIKGCLD-----------------------CGNLGM------ 92

Query: 304 VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV 363
             A  L  E    PE ++     +V  Y K G+V  A+ +F  M  +D+ +WNA++  Y 
Sbjct: 93  --ATRLFDE---MPEKNVISWTTMVNGYLKFGRVELAQRLFLDMHVKDVAAWNAMVHGYF 147

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
             G ++E   LFE M  R+++SWT MI GL  NG  EE L +F +M   G +P    FA 
Sbjct: 148 ENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFAC 207

Query: 424 AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
            +++CA       G Q+H  +V  G         +LIT YA C  +E A+ +FN     +
Sbjct: 208 VLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKN 267

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFE 543
            V W A++ A   +     A+ ++  M K G LP++ TF   L AC     + +G+    
Sbjct: 268 VVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKGKE-IH 326

Query: 544 TMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
           TM    G+          + +    G  + A  V  ++  K     W +++ G   HG
Sbjct: 327 TMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVS-WNSIIVGSAQHG 383



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 125/517 (24%), Positives = 206/517 (39%), Gaps = 135/517 (26%)

Query: 48  PREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKT 107
           P  H+  ++I  Y ++ +L  A  LFD +   D+V+  ++I       N+ +A  +F++ 
Sbjct: 41  PNLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVVSWNSMIKGCLDCGNLGMATRLFDEM 100

Query: 108 PLK-----------------------------MRDTVFYNAMITAYSHNS---------- 128
           P K                             ++D   +NAM+  Y  N           
Sbjct: 101 PEKNVISWTTMVNGYLKFGRVELAQRLFLDMHVKDVAAWNAMVHGYFENGRVEEGVRLFE 160

Query: 129 -------------------NGHA--AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEK 167
                              NG +  A+ +F+ M R  V+P   TF  VLSA A  VE   
Sbjct: 161 EMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSACANAVEFNL 220

Query: 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS 227
             +Q+H  VVK G      +  +LI+ Y  C+          +  A ++F+E   ++ + 
Sbjct: 221 G-VQVHGHVVKLGCFFHEFISVSLITFYANCMK---------IEHAHKIFNETLTKNVVK 270

Query: 228 WTTMMTGYV-KNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYT 286
           WT ++T YV  N + DA R F D                       M  +    ++ T++
Sbjct: 271 WTALLTAYVWNNKHQDALRVFGD-----------------------MTKMGALPNQSTFS 307

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
             + AC        GK++H   +    K   E  + V N+LV +Y +CG VN A  +F  
Sbjct: 308 ITLKACCGLEALDKGKEIHTMAI----KLGLETDVFVGNSLVVMYTECGNVNSAVAVFRN 363

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
           + E+D+VSWN+I                               I G AQ+G+G   L  F
Sbjct: 364 INEKDIVSWNSI-------------------------------IVGSAQHGFGLWALIFF 392

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN---ALITMY 463
           +QM   G  P +  F G +++C+  G L  GR     +  S Y S++        ++ + 
Sbjct: 393 NQMIRRGVDPNEITFTGLLSACSRSGMLLKGRCFFEYI--SRYKSNVLRPQHYACMVDIL 450

Query: 464 ARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
            RCG ++ A  +   MP   +S+ W A+++A   H N
Sbjct: 451 GRCGKLDEAEELVRYMPVKANSMIWLALLSACRVHSN 487


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 225/544 (41%), Positives = 342/544 (62%), Gaps = 15/544 (2%)

Query: 259 WNALISGYVHRE--LKMLMLR-------IQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
           W ALI GY  +   ++ ++L        I    FT+T+++ AC+ +    LG+QVH   +
Sbjct: 107 WTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTI 166

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLID 369
                 +    L V N L+ +Y KCG +     +F++M +RD++SW +++ AY   G ++
Sbjct: 167 LIGGFGS---DLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNME 223

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
            A  LF+ +  +++++WT M++G AQN    E L++F +M+  G K  +    G I++CA
Sbjct: 224 AASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACA 283

Query: 430 GLGALENGRQLHAQLVHSGY--DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
            LGA +    +      SG+   S++  G+ALI MYA+CG VE A  VF  M   +  S+
Sbjct: 284 QLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSY 343

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
           ++MI     HG    A+EL+++MLK  I P+R+TF+ VL+AC+HAG+V++G++ F  M  
Sbjct: 344 SSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEE 403

Query: 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
            +G+ P EDHYA  +DLL RAG+  EA +++  +P  P   +W ALL  CRIHGN D+  
Sbjct: 404 CHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQ 463

Query: 608 QAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNK- 666
            AA  LF+L P+  G Y+LLSN+YA+ GRWDD ++VRKLMR +G+KK PGCSW+E     
Sbjct: 464 IAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGI 523

Query: 667 VHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKL 726
           +H F   D +HP+++ + + LE L+  ++ LGY P+   V +D+  ++K+  L +HSEKL
Sbjct: 524 IHEFFAGDMSHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEKKRLLMSHSEKL 583

Query: 727 AVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSC 786
           A+AFGL+    G T+R++KNLRIC DCH+     S++ GREIVVRD  RFHHFRDG+CSC
Sbjct: 584 ALAFGLLTTNAGCTIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRFHHFRDGRCSC 643

Query: 787 GDYW 790
           G++W
Sbjct: 644 GNFW 647



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 141/508 (27%), Positives = 219/508 (43%), Gaps = 103/508 (20%)

Query: 10  RTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLV-- 67
           + L +R  S L  C   N +     + VHAH+   G +    ++ +L+    K    +  
Sbjct: 36  KILESRLVSVLHGCTHINQV-----KQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDP 90

Query: 68  YARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHN 127
           Y R +F ++  P+    T LI  Y+             + P  M   + YN+M       
Sbjct: 91  YPRLVFQQVEYPNPFLWTALIRGYAL------------QGPF-MESVLLYNSM------- 130

Query: 128 SNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL--ALIVEEEKQCMQMHCTVVKSGTGLFT 185
                        RR  + P +FTFT++L A   AL V   +Q      T++  G G   
Sbjct: 131 -------------RRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQ--TILIGGFGSDL 175

Query: 186 SVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245
            V N LI +YVKC           +G   RVFDEM +RD +SWT+++  Y K   ++AA 
Sbjct: 176 YVGNTLIDMYVKC---------GCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAAS 226

Query: 246 EFLDGMSENVGVAWNALISGYVH----RELKMLMLRIQ-----LDEFTYTSVISACANSG 296
           E  DG+     VAW A+++GY      RE   +  R+Q      DE T   VISACA   
Sbjct: 227 ELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACA--- 283

Query: 297 LFRLGKQVHAYLLRTEAKPT---PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV 353
             +LG   +A  +R  A+ +   P  ++ V +AL+ +Y KCG V +A  +F +M ER++ 
Sbjct: 284 --QLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVY 341

Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
           S+++++  +   GL   A  LF+ M +  +                              
Sbjct: 342 SYSSMIVGFAMHGLAGAAMELFDEMLKTEI------------------------------ 371

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAA 472
            KP    F G +T+C+  G +E G+QL A +    G   S      ++ +  R G +E A
Sbjct: 372 -KPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEA 430

Query: 473 NCVFNTMP-NVDSVSWNAMIAALGQHGN 499
             +   MP N     W A++ A   HGN
Sbjct: 431 LNLVKMMPMNPHGGVWGALLGACRIHGN 458



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 112/393 (28%), Positives = 184/393 (46%), Gaps = 48/393 (12%)

Query: 32  SLARSVHAHMI-SSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
           +L R VH   I   GF    ++ N LID+Y K   L     +FDE+   D+++ T+LI A
Sbjct: 156 NLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVA 215

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
           Y+   N++ A E+F+  P  M+D V + AM+T Y+ N+    A+E+F  M+   VK D  
Sbjct: 216 YAKVGNMEAASELFDGLP--MKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEV 273

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL--NALISVYVKCVSSPFVSSRS 208
           T   V+SA A +    K    +     +SG G  ++V+  +ALI +Y KC S        
Sbjct: 274 TLVGVISACAQL-GAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGS-------- 324

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
            +  A +VF+ M ER+  S+++M+ G+  +    AA E  D                   
Sbjct: 325 -VEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFD------------------- 364

Query: 269 RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALV 328
              +ML   I+ +  T+  V++AC+++G+   G+Q+ A +         E        +V
Sbjct: 365 ---EMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYA---CMV 418

Query: 329 TLYWKCGKVNEARDIFNQMPERDLVS-WNAILSAYVSAGLIDEAK----SLFEAMRERNL 383
            L  + G++ EA ++   MP       W A+L A    G  D A+     LFE   E N 
Sbjct: 419 DLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFEL--EPNG 476

Query: 384 LSWTVMISGL-AQNGYGEEGLKLFSQMRLEGFK 415
           +   +++S + A  G  ++  K+   MR +G K
Sbjct: 477 IGNYILLSNIYASAGRWDDVSKVRKLMRAKGLK 509



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 95/445 (21%), Positives = 172/445 (38%), Gaps = 93/445 (20%)

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP-----VNNALVTLYWKCGKVNEARD 342
           ++  C  + LF L K  +  L      P   FS+      + + LV++   C  +N+ + 
Sbjct: 1   MVKFCTKTCLFILPKTSYCQLQTQSFIP---FSVRQEQKILESRLVSVLHGCTHINQVKQ 57

Query: 343 IFNQMPERDLVSWNAILSAYV------SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
           +   +  + L     +L+  +         +    + +F+ +   N   WT +I G A  
Sbjct: 58  VHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYALQ 117

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ-LVHSGYDSSLSA 455
           G   E + L++ MR +G  P  + F   + +C+    +  GRQ+H Q ++  G+ S L  
Sbjct: 118 GPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLYV 177

Query: 456 GNALITMYARCGVV-------------------------------EAANCVFNTMPNVDS 484
           GN LI MY +CG +                               EAA+ +F+ +P  D 
Sbjct: 178 GNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDM 237

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
           V+W AM+    Q+     A+E++E+M   G+  D +T + V+SAC   G  K    +   
Sbjct: 238 VAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYA-NWVRD 296

Query: 545 MHGPYGIPPGEDHY--ARFIDLLCRAGKFSEAKDVIDSL--------------------- 581
           +    G  P  +    +  ID+  + G   +A  V + +                     
Sbjct: 297 VAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLA 356

Query: 582 -------------PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT----- 623
                          KP+   +  +L  C   G ++ G    +QLF +M    G      
Sbjct: 357 GAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQG----QQLFAMMEECHGVAPSED 412

Query: 624 -YVLLSNMYANLGRWDDAARVRKLM 647
            Y  + ++    GR ++A  + K+M
Sbjct: 413 HYACMVDLLGRAGRLEEALNLVKMM 437


>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
 gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
          Length = 941

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 266/757 (35%), Positives = 409/757 (54%), Gaps = 81/757 (10%)

Query: 45  GFKPREHIINRLIDIYCKSL------KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVK 98
           G K  E     ++++ C++L      +++ AR L        ++A T+LI+ Y     + 
Sbjct: 255 GVKANEVTYMSMVEV-CRNLDAVKEGEMIDARILESPFCSSTLLA-TSLISLYGQCGILD 312

Query: 99  LAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA 158
            A+ +     +  RD V +NAM+TA + N +   AI L R M  +    +  T+ SVL A
Sbjct: 313 RAKGLLEH--MYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEA 370

Query: 159 LALIVEEEKQCMQMHCTVVKSGT-GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVF 217
            A + E   Q  ++H  V+  G      +V N++I++Y KC  +          AA  VF
Sbjct: 371 CANL-EALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTE---------AAMSVF 420

Query: 218 DEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLR 277
           + MP +D++SW  ++   V N     A E   GM                  EL+ L   
Sbjct: 421 EAMPRKDDVSWNAVINASVGNSKFQDALELFHGM------------------ELEGL--- 459

Query: 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
            + +EFT  S++ AC      +L +Q+HA             S  V N++V +Y +CG  
Sbjct: 460 -RSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGN---STAVGNSVVNMYARCGS- 514

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQ-- 395
                                        L+D AK  F+++ E+ L++W+++++  AQ  
Sbjct: 515 -----------------------------LLD-AKKAFDSLEEKGLVAWSIILAAYAQSK 544

Query: 396 NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY-DSSLS 454
           +G G    K F +M  EG KP +  F  A+ +CA +  LE+GR +H +   SG+ ++SL 
Sbjct: 545 DGPGRRAFKFFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLV 604

Query: 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
            GN +I MY +CG    A  VF+ MP    +SWN++I A   +G+   A+   ++ML +G
Sbjct: 605 LGNTIINMYGKCGSPSDAKLVFDQMPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQG 664

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
             PD  T +++L   +HAGL++ G  +F +    +G+ P        +DLL R G    A
Sbjct: 665 FDPDSGTSVSILYGLSHAGLLERGVEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAA 724

Query: 575 KDVIDSLPFKPSAPI-WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN 633
           +++I + P   +  I W  LLA C+ +G+   GI+ AE++F+L P H+G++V+L+N+YA+
Sbjct: 725 EELILASPACQADTIAWMTLLAACKSYGDPQRGIRCAERVFELEPQHSGSFVVLANLYAS 784

Query: 634 LGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLE 693
           +GRW DA+R+RK+M    VKKEPGCSWIE+   VH F+  ++ HP+ + + + LE+L L 
Sbjct: 785 VGRWSDASRIRKMMERMSVKKEPGCSWIELSGSVHEFISGESKHPKIREICEDLEKLTLR 844

Query: 694 MRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDC 753
           MR+ GYVPDT  V+HD+E   KE  LS HSE+LA+ FGLM    G T+RV+KNLR+C DC
Sbjct: 845 MREAGYVPDTTNVVHDVEEGDKEEILSRHSERLAIVFGLMSTRPGETIRVVKNLRVCSDC 904

Query: 754 HNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           H A K +S VVGREIVVRD  RFHHF+ G+CSCGD+W
Sbjct: 905 HAATKIISSVVGREIVVRDSSRFHHFKHGQCSCGDFW 941



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 147/533 (27%), Positives = 235/533 (44%), Gaps = 58/533 (10%)

Query: 109 LKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQ 168
           +  ++   +  M+ AYS N +   A+ELF  M+ +  +PD   F   L A A   E +  
Sbjct: 18  ISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVVFVIALDACAASGELDHG 77

Query: 169 CMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSW 228
             Q+H +VV SG      + N+L+++Y KC   P          A +VFD M  RD +SW
Sbjct: 78  -RQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVP---------CAEKVFDGMLLRDVVSW 127

Query: 229 TTMMTGYVKNDYLDAAREFLDGMS------------------------------------ 252
           T M+  Y +N     A E L  M                                     
Sbjct: 128 TAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIIN 187

Query: 253 ---ENVGVAWNALISGY----VHRELKMLMLRI-QLDEFTYTSVISACANSGLFRLGKQV 304
              E  G+  NAL+  Y       ++K +  R+ Q     +T++I+ C+ +G +  G  V
Sbjct: 188 EGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLV 247

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTL-YWKCGKVNEARDIFNQMPERDLVSWNAILSAYV 363
              +     K      + +      L   K G++ +AR + +      L++  +++S Y 
Sbjct: 248 FRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLA-TSLISLYG 306

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
             G++D AK L E M +R++++W  M++  AQNG   E + L  +M +EGF      +  
Sbjct: 307 QCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLS 366

Query: 424 AITSCAGLGALENGRQLHAQLVHSG-YDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
            + +CA L AL  GR++HA+++  G     ++ GN++ITMY +CG  EAA  VF  MP  
Sbjct: 367 VLEACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRK 426

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
           D VSWNA+I A   +     A+EL+  M  EG+  +  T L++L AC     +K  R+  
Sbjct: 427 DDVSWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIH 486

Query: 543 ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
                              +++  R G   +AK   DSL  K     W  +LA
Sbjct: 487 ARAAAGGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLEEKGLVA-WSIILA 538



 Score =  149 bits (376), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 160/299 (53%), Gaps = 8/299 (2%)

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
           Y     + +A  +F+ +  +N+ SWT+M++  +QNG+  E L+LF++M+ EG +P    F
Sbjct: 2   YGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVVF 61

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
             A+ +CA  G L++GRQ+H+ +V SG  S++   N+L+ MY +C  V  A  VF+ M  
Sbjct: 62  VIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLL 121

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY 541
            D VSW AM+A   Q+G  ++A+E   +M  EG+ P+++TF+T++  C    L+  GR+ 
Sbjct: 122 RDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKI 181

Query: 542 FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
              +    G+ P        + +    G F + K V   +  + S  +W  ++AGC  +G
Sbjct: 182 HHRIINE-GLEPDGILGNALVHMYGSCGSFDDMKSVFSRMG-QSSVLLWTTMIAGCSQNG 239

Query: 602 NIDLGIQAAEQL-FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCS 659
             + G+    ++  + +  +  TY+ +  +  NL    DA +  +++  R + + P CS
Sbjct: 240 QYEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNL----DAVKEGEMIDAR-ILESPFCS 293



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 166/388 (42%), Gaps = 61/388 (15%)

Query: 216 VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLM 275
           VFD +  ++  SWT MM  Y +N +   A E    M       W                
Sbjct: 14  VFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQ------WEG-------------- 53

Query: 276 LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG 335
              + D+  +   + ACA SG    G+Q+H+ ++ +        ++ ++N+LV +Y KC 
Sbjct: 54  --TRPDKVVFVIALDACAASGELDHGRQIHSSVVGSGLTS----NIIISNSLVNMYGKCQ 107

Query: 336 KVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQ 395
            V  A  +F+ M  RD+VSW A+L+ Y                               AQ
Sbjct: 108 DVPCAEKVFDGMLLRDVVSWTAMLAVY-------------------------------AQ 136

Query: 396 NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSA 455
           NG   + L+  S+M  EG KP    F   +  CA L  L+ GR++H ++++ G +     
Sbjct: 137 NGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIINEGLEPDGIL 196

Query: 456 GNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI 515
           GNAL+ MY  CG  +    VF+ M     + W  MIA   Q+G     + ++ +M  EG+
Sbjct: 197 GNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVFRKMDLEGV 256

Query: 516 LPDRITFLTVLSACNHAGLVKEGRRY-FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
             + +T+++++  C +   VKEG       +  P+            I L  + G    A
Sbjct: 257 KANEVTYMSMVEVCRNLDAVKEGEMIDARILESPF--CSSTLLATSLISLYGQCGILDRA 314

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGN 602
           K +++ + ++     W A++  C  +G+
Sbjct: 315 KGLLEHM-YQRDVVAWNAMVTACAQNGD 341



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 2/134 (1%)

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           MY +C  V  A  VF+ +   +  SW  M+AA  Q+G+   A+EL+ +M  EG  PD++ 
Sbjct: 1   MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVV 60

Query: 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581
           F+  L AC  +G +  GR+   ++ G  G+          +++  +      A+ V D +
Sbjct: 61  FVIALDACAASGELDHGRQIHSSVVGS-GLTSNIIISNSLVNMYGKCQDVPCAEKVFDGM 119

Query: 582 PFKPSAPIWEALLA 595
             +     W A+LA
Sbjct: 120 LLRDVVS-WTAMLA 132



 Score = 43.5 bits (101), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 84/203 (41%), Gaps = 26/203 (12%)

Query: 41  MISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP-----QPDIVARTTLIAAYSASD 95
           M + G KP E      +D       L + R++          +  +V   T+I  Y    
Sbjct: 558 MEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCG 617

Query: 96  NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV 155
           +   A+ +F++ P K    + +N++I AY+HN +   A+   ++M      PD+ T  S+
Sbjct: 618 SPSDAKLVFDQMPEKC--LISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSI 675

Query: 156 LSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLN----ALISVYVKCVSSPFVSSRSLMG 211
           L  L+            H  +++ G   F S +        S  +KC+    ++ +  + 
Sbjct: 676 LYGLS------------HAGLLERGVEHFRSSIQDHGLEPSSGQLKCLVD-LLARKGFLD 722

Query: 212 AARRVFDEMP--ERDELSWTTMM 232
           AA  +    P  + D ++W T++
Sbjct: 723 AAEELILASPACQADTIAWMTLL 745


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 266/715 (37%), Positives = 392/715 (54%), Gaps = 60/715 (8%)

Query: 86  TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
            L++ Y+    V  A+ +F  +   + D V +N MI+          A+++  DM    V
Sbjct: 197 ALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGV 256

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS-VLNALISVYVKCVSSPFV 204
           +PD  TF S L A + + E      ++H  V+K       S V +AL+ +Y         
Sbjct: 257 RPDGVTFASALPACSRL-ELLGVGREVHAFVLKDDDLAANSFVASALVDMY--------- 306

Query: 205 SSRSLMGAARRVFDEMPE--RDELSWTTMMTGYVKNDYLDA-AREFLDGMSENVGVAWNA 261
           +S   +  ARRVFD +PE  R    W  M+ GY ++  +D  A E    M    G A + 
Sbjct: 307 ASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPS- 365

Query: 262 LISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
                               E T   V+ ACA S +F   + VH Y+++ +   +  F  
Sbjct: 366 --------------------ETTMAGVLPACARSEVFTGKEAVHGYVVKRDMA-SNRF-- 402

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
            V NAL+ +Y + G+++EA  IF  +  RD+VSWN +++  +  GLI EA   F+ +RE 
Sbjct: 403 -VQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEA---FQLVREM 458

Query: 382 NL----LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
            L     S   M+ G   +  G+  +            P +      +  CA L A   G
Sbjct: 459 QLPSSAASGETMLEGDDTSVDGQRCM------------PNNITLMTLLPGCAVLAAPARG 506

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           +++H   V    +S L+ G+AL+ MYA+CG +  A  VF+ +P  + ++WN +I A G H
Sbjct: 507 KEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVITWNVLIMAYGMH 566

Query: 498 GNGARAIELYEQMLKEG-ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
           G G  A+ L+++M+  G   P+ +TF+  L+AC+H+GLV  G   F+ M   YG  P   
Sbjct: 567 GLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPY 626

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSL-PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
            +A  +D+L RAG+  EA  +I S+ P +     W  +L  CR+H N+ LG  AAE+LF+
Sbjct: 627 LHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLGRIAAERLFE 686

Query: 616 LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
           L P  A  YVLL N+Y+  G W+++  VR +MR RGV KEPGCSWIE+D  +H F+  ++
Sbjct: 687 LEPDEASHYVLLCNIYSAAGLWENSTEVRGMMRQRGVAKEPGCSWIELDGAIHRFMAGES 746

Query: 676 AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKL 735
           AHPE+  V+ +++ L   MR+ GYVPDT  VLHD++  +K   L  HSEKLA+AFGL++ 
Sbjct: 747 AHPESAQVHAHMDALWERMRREGYVPDTSCVLHDVDEAEKAAMLRYHSEKLAIAFGLLRA 806

Query: 736 PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           P GAT+RV KNLR+C DCH A KF+S++VGREIV+RD +RFHHFRDG CSCGDYW
Sbjct: 807 PPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFRDGTCSCGDYW 861



 Score =  133 bits (334), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 138/557 (24%), Positives = 233/557 (41%), Gaps = 104/557 (18%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           +P       L+ AY+   ++  A  +F  TP  +RD V YN++I+A         A++  
Sbjct: 82  RPTPAVSNALLTAYARCGDLDAALALFAATPPDLRDAVSYNSLISALCLFRRWGHALDAL 141

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEE-EKQCMQMHCTVVKSG---TGLFTSVLNALIS 193
           RDM  D  +  +FT  SVL A + + ++  +   + H   +K G    G      NAL+S
Sbjct: 142 RDMLADH-EVSSFTLVSVLLACSHLADQGHRLGREAHAFALKHGFLDKGRERFPFNALLS 200

Query: 194 VYVKCVSSPFVSSRSLMGAARRVF--DEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           +Y +           L+  A+R+F        D ++W TM++  V+    + A + L   
Sbjct: 201 MYARL---------GLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVL--- 248

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
                                M+ L ++ D  T+ S + AC+   L  +G++VHA++L+ 
Sbjct: 249 -------------------YDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKD 289

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--RDLVSWNAILSAYVSAGLID 369
           +      F   V +ALV +Y    +V+ AR +F+ +PE  R L  WNA++  Y   G +D
Sbjct: 290 DDLAANSF---VASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMD 346

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSC 428
                                         EE ++LFS+M  E G  P +   AG + +C
Sbjct: 347 ------------------------------EEAIELFSRMEAEAGCAPSETTMAGVLPAC 376

Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
           A          +H  +V     S+    NAL+ MYAR G ++ A+ +F  +   D VSWN
Sbjct: 377 ARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWN 436

Query: 489 AMIAALGQHGNGARAIELYEQM-----------LKEG---------ILPDRITFLTVLSA 528
            +I      G  + A +L  +M           + EG          +P+ IT +T+L  
Sbjct: 437 TLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPG 496

Query: 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDH----YARFIDLLCRAGKFSEAKDVIDSLPFK 584
           C        G+     +HG Y +    +      +  +D+  + G  + A+ V D LP +
Sbjct: 497 CAVLAAPARGKE----IHG-YAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLP-R 550

Query: 585 PSAPIWEALLAGCRIHG 601
            +   W  L+    +HG
Sbjct: 551 RNVITWNVLIMAYGMHG 567



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 178/394 (45%), Gaps = 38/394 (9%)

Query: 61  CKSLKL------VYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDT 114
           C  L+L      V+A  L D+    +    + L+  Y++++ V  AR +F+  P   R  
Sbjct: 270 CSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQL 329

Query: 115 VFYNAMITAYS-HNSNGHAAIELFRDMRRD-DVKPDNFTFTSVLSALA---LIVEEEKQC 169
             +NAMI  Y+ H      AIELF  M  +    P   T   VL A A   +   +E   
Sbjct: 330 GMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEA-- 387

Query: 170 MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWT 229
             +H  VVK        V NAL+ +Y +            M  A  +F  +  RD +SW 
Sbjct: 388 --VHGYVVKRDMASNRFVQNALMDMYARL---------GRMDEAHTIFAMIDLRDIVSWN 436

Query: 230 TMMTGYVKNDYLDAAREFLDGMS-ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSV 288
           T++TG +    +  A + +  M   +   +   ++ G    +  +   R   +  T  ++
Sbjct: 437 TLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEG---DDTSVDGQRCMPNNITLMTL 493

Query: 289 ISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
           +  CA       GK++H Y +R       E  L V +ALV +Y KCG +  AR +F+++P
Sbjct: 494 LPGCAVLAAPARGKEIHGYAVRHAL----ESDLAVGSALVDMYAKCGCLALARAVFDRLP 549

Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER-----NLLSWTVMISGLAQNGYGEEGL 403
            R++++WN ++ AY   GL DEA +LF+ M        N +++   ++  + +G  + GL
Sbjct: 550 RRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGL 609

Query: 404 KLFSQMRLE-GFKPCDYAFAGAITSCAGLGALEN 436
           +LF  M+ + GF+P  Y  A  +      G L+ 
Sbjct: 610 ELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDE 643



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 156/359 (43%), Gaps = 61/359 (16%)

Query: 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEA--KPTPEFSLPVNNALVTLYWKCGKVN 338
           D F     I + A     R  + +H   LR     +PTP     V+NAL+T Y +CG ++
Sbjct: 47  DHFALPPAIKSAAALRDSRSTRAIHGASLRRALLHRPTPA----VSNALLTAYARCGDLD 102

Query: 339 EARDIFNQMPE--RDLVSWNAILSAYVSAGLIDEAKSLFEAMRE----RNLLSWTVMISG 392
            A  +F   P   RD VS+N+++SA     L        +A+R+      + S+T++   
Sbjct: 103 AALALFAATPPDLRDAVSYNSLISALC---LFRRWGHALDALRDMLADHEVSSFTLVSVL 159

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
           LA +   ++G +L                               GR+ HA  +  G+   
Sbjct: 160 LACSHLADQGHRL-------------------------------GREAHAFALKHGF--- 185

Query: 453 LSAG------NALITMYARCGVVE-AANCVFNTMPNV-DSVSWNAMIAALGQHGNGARAI 504
           L  G      NAL++MYAR G+V+ A    F++   V D V+WN MI+ L Q G    A+
Sbjct: 186 LDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAV 245

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
           ++   M+  G+ PD +TF + L AC+   L+  GR     +     +       +  +D+
Sbjct: 246 QVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDM 305

Query: 565 LCRAGKFSEAKDVIDSLP-FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622
                + S A+ V D +P       +W A++ G   HG +D   + A +LF  M   AG
Sbjct: 306 YASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMD---EEAIELFSRMEAEAG 361



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 107/473 (22%), Positives = 188/473 (39%), Gaps = 86/473 (18%)

Query: 36  SVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA-- 93
           +VH +++         + N L+D+Y +  ++  A T+F  I   DIV+  TLI       
Sbjct: 387 AVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQG 446

Query: 94  --SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
             S+  +L REM   +     +T     M+     + +G   +            P+N T
Sbjct: 447 LISEAFQLVREMQLPSSAASGET-----MLEGDDTSVDGQRCM------------PNNIT 489

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             ++L   A++    +   ++H   V+       +V +AL+ +Y KC           + 
Sbjct: 490 LMTLLPGCAVLAAPARG-KEIHGYAVRHALESDLAVGSALVDMYAKC---------GCLA 539

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            AR VFD +P R+ ++W  ++  Y  +   D A    D M  N     N           
Sbjct: 540 LARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPN----------- 588

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVTL 330
                     E T+ + ++AC++SGL   G ++   + R    +PTP     ++  +V +
Sbjct: 589 ----------EVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPY----LHACVVDV 634

Query: 331 YWKCGKVNEARDIFNQMP--ERDLVSWNAILSA-----YVSAGLIDEAKSLFEAMRERNL 383
             + G+++EA  I + M   E  + +W+ +L A      V  G I  A+ LFE +     
Sbjct: 635 LGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLGRI-AAERLFE-LEPDEA 692

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP---CDY-AFAGAITS-CAGLGALENGR 438
             + ++ +  +  G  E   ++   MR  G      C +    GAI    AG  A     
Sbjct: 693 SHYVLLCNIYSAAGLWENSTEVRGMMRQRGVAKEPGCSWIELDGAIHRFMAGESAHPESA 752

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
           Q+HA +            +AL     R G V   +CV +   +VD     AM+
Sbjct: 753 QVHAHM------------DALWERMRREGYVPDTSCVLH---DVDEAEKAAML 790



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 121/274 (44%), Gaps = 51/274 (18%)

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSG--YDSSLSAGNALITMYARCGVVEAANCVF 476
           +A   AI S A L    + R +H   +     +  + +  NAL+T YARCG ++AA  +F
Sbjct: 49  FALPPAIKSAAALRDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALALF 108

Query: 477 NTMPN--VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
              P    D+VS+N++I+AL        A++    ML +  +    T ++VL AC+H  L
Sbjct: 109 AATPPDLRDAVSYNSLISALCLFRRWGHALDALRDMLADHEVSS-FTLVSVLLACSH--L 165

Query: 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
             +G R     H  + +  G      F+D     G+        +  PF        ALL
Sbjct: 166 ADQGHRLGREAHA-FALKHG------FLD----KGR--------ERFPFN-------ALL 199

Query: 595 AGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL---GRWDDAARVRKLMRDRG 651
           +   ++  + L +  A++LF       G  V  + M + L   GR ++A +V   M   G
Sbjct: 200 S---MYARLGL-VDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALG 255

Query: 652 VKKE--------PGCSWIE---VDNKVHVFLVDD 674
           V+ +        P CS +E   V  +VH F++ D
Sbjct: 256 VRPDGVTFASALPACSRLELLGVGREVHAFVLKD 289



 Score = 47.8 bits (112), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 4/129 (3%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           + +H + +    +    + + L+D+Y K   L  AR +FD +P+ +++    LI AY   
Sbjct: 507 KEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVITWNVLIMAYGMH 566

Query: 95  DNVKLAREMFNKTPLKMRDT---VFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPDNF 150
                A  +F++       T   V + A + A SH+      +ELF+ M+RD   +P  +
Sbjct: 567 GLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPY 626

Query: 151 TFTSVLSAL 159
               V+  L
Sbjct: 627 LHACVVDVL 635


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 241/585 (41%), Positives = 344/585 (58%), Gaps = 33/585 (5%)

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           + R+F +  E +   + TM+ G V ND    + E    M +                   
Sbjct: 61  SHRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKE------------------ 102

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                +  D FT+  ++ ACA     +LG ++H  ++    K   E    VN +LV+LY 
Sbjct: 103 ----GLSPDSFTFPFLLKACARLLDSKLGIKLHGLVV----KAGCESDAFVNTSLVSLYG 154

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK-------SLFEAMRERNLLS 385
           KCG ++ A  +F+ +PE+++ +W AI+S Y+  G   EA        S+F+ M E++++S
Sbjct: 155 KCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVS 214

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
           W+ MI G A NG  +E L LF +M  EGF+P  YA  G + +CA LGALE G      + 
Sbjct: 215 WSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMD 274

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIE 505
            + +  +   G ALI MYA+CG +++A  VF  M   D V WNA I+ L   G+   A  
Sbjct: 275 RNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFG 334

Query: 506 LYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLL 565
           L+ QM K GI PD  TF+ +L AC HAGLV EGR+YF +M   + + P  +HY   +DLL
Sbjct: 335 LFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLL 394

Query: 566 CRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYV 625
            RAG   EA  ++ S+P + +A +W ALL GCR+H +  L     +QL  L P ++G YV
Sbjct: 395 GRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIALEPSNSGNYV 454

Query: 626 LLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYK 685
           LLSN+Y+   +W+DAA++R +M +RG+KK PG SWIEVD  VH FLV DT+HP ++ +Y 
Sbjct: 455 LLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFLVGDTSHPLSEKIYA 514

Query: 686 YLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLK 745
            L +LV +++  GYVP T +VL D+E ++KE+ +  HSEKLA+AFGL+       +RV+K
Sbjct: 515 KLGELVKDLKASGYVPTTDYVLFDIEEEEKEHFIGCHSEKLAIAFGLISTAPNDKIRVVK 574

Query: 746 NLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           NLR+CGDCH A K +S+  GREI+VRD  RFH F DG CSC DYW
Sbjct: 575 NLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFNDGSCSCKDYW 619



 Score =  156 bits (395), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 128/494 (25%), Positives = 218/494 (44%), Gaps = 90/494 (18%)

Query: 51  HIINRLIDIY--CKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTP 108
           HI  RL   +   K LK V+A  L   + +   +    L  +++   N   +  +F++T 
Sbjct: 11  HIKIRLFQGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFG-NTNYSHRIFHQT- 68

Query: 109 LKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQ 168
            K  +   +N MI     N +   +IE++  MR++ + PD+FTF  +L A A ++ + K 
Sbjct: 69  -KEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLL-DSKL 126

Query: 169 CMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSW 228
            +++H  VVK+G      V  +L+S+Y KC           +  A +VFD++PE++  +W
Sbjct: 127 GIKLHGLVVKAGCESDAFVNTSLVSLYGKC---------GFIDNAFKVFDDIPEKNVAAW 177

Query: 229 TTMMTGYV-------KNDYLDAAREFLDGMSENVGVAWNALISGYVHREL---------K 272
           T +++GY+         D    A    DGM E   V+W+++I GY    L         K
Sbjct: 178 TAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFK 237

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           ML    + D +    V+ ACA  G   LG      + R E    P     +  AL+ +Y 
Sbjct: 238 MLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNP----VLGTALIDMYA 293

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           KCG+++ A ++F  M ++D+V WNA +                               SG
Sbjct: 294 KCGRMDSAWEVFRGMRKKDIVVWNAAI-------------------------------SG 322

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ----------LHA 442
           LA +G+ +    LF QM   G +P    F G + +C   G ++ GRQ          L  
Sbjct: 323 LAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTP 382

Query: 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGA 501
           ++ H G          ++ +  R G ++ A+ +  +MP   +++ W A++     H    
Sbjct: 383 EIEHYG---------CMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLH---- 429

Query: 502 RAIELYEQMLKEGI 515
           R  +L E +LK+ I
Sbjct: 430 RDTQLVEGVLKQLI 443



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 129/302 (42%), Gaps = 48/302 (15%)

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           N +L    + G  + +  +F   +E N+  +  MI GL  N   +E ++++  MR EG  
Sbjct: 46  NKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLS 105

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P  + F   + +CA L   + G +LH  +V +G +S      +L+++Y +CG ++ A  V
Sbjct: 106 PDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKV 165

Query: 476 FNTMP--NV------------------------------------DSVSWNAMIAALGQH 497
           F+ +P  NV                                    D VSW++MI     +
Sbjct: 166 FDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASN 225

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETM--HGPYGIPPGE 555
           G    A++L+ +ML EG  PD    + VL AC   G ++ G      M  +   G P   
Sbjct: 226 GLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPV-- 283

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
                 ID+  + G+   A +V   +  K    +W A ++G  + G+    ++AA  LF 
Sbjct: 284 -LGTALIDMYAKCGRMDSAWEVFRGMR-KKDIVVWNAAISGLAMSGH----VKAAFGLFG 337

Query: 616 LM 617
            M
Sbjct: 338 QM 339



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 143/340 (42%), Gaps = 43/340 (12%)

Query: 29  ITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLI 88
           + S L   +H  ++ +G +    +   L+ +Y K   +  A  +FD+IP+ ++ A T +I
Sbjct: 122 LDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAII 181

Query: 89  AAYSASDNVKLAREMFNKT-----PLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD 143
           + Y      + A +MF +       +  +D V +++MI  Y+ N     A++LF  M  +
Sbjct: 182 SGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNE 241

Query: 144 DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL-NALISVYVKCVSSP 202
             +PD +    VL A A +   E         ++     L   VL  ALI +Y KC    
Sbjct: 242 GFRPDCYAMVGVLCACARLGALELG--NWASNLMDRNEFLGNPVLGTALIDMYAKC---- 295

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL 262
                  M +A  VF  M ++D + W   ++G   + ++ AA     G  E  G      
Sbjct: 296 -----GRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLF-GQMEKSG------ 343

Query: 263 ISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
                          I+ D  T+  ++ AC ++GL   G+Q    + R     TPE  + 
Sbjct: 344 ---------------IEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERV-FTLTPE--IE 385

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
               +V L  + G ++EA  +   MP E + + W A+L  
Sbjct: 386 HYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGG 425



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 8/170 (4%)

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
           G  +L++ + +HA L+  G D      N ++      G    ++ +F+     +   +N 
Sbjct: 19  GFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNT 78

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG-- 547
           MI  L  + +   +IE+Y  M KEG+ PD  TF  +L AC      K G +    +HG  
Sbjct: 79  MIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIK----LHGLV 134

Query: 548 -PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
              G           + L  + G    A  V D +P K  A  W A+++G
Sbjct: 135 VKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAA-WTAIISG 183


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 257/710 (36%), Positives = 392/710 (55%), Gaps = 81/710 (11%)

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
           +A+ N  L   +FNK      D   +N++I   +   +   ++  F  MR+ D+KP+  T
Sbjct: 27  AAATNTNLT-TLFNKY-FDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRST 84

Query: 152 FTSVLSALALIVE--EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           F   + + + + +    KQ  Q    V    + LF S  +ALI +Y KC           
Sbjct: 85  FPCAIKSCSALFDLNSGKQAHQ-QALVFGFESDLFVS--SALIDMYSKC---------GK 132

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAA----REFL----DGMSENVGVAWNA 261
           +  AR +FDE+P R+ ++WT+++TGYV+ND    A    +EFL    +G  E VG +   
Sbjct: 133 LSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTS--- 189

Query: 262 LISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
                             +D     SV+SAC+      + + VH   ++          +
Sbjct: 190 ------------------VDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKV----M 227

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
            V N L+  Y KC                               G +  ++ +F+ M E+
Sbjct: 228 GVENTLLDAYAKC-------------------------------GEVSLSRKVFDDMAEK 256

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQM-RLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
           +++SW  MI+  AQNG   +  ++F  M +  G K  +   +  + +CA  GAL  G  L
Sbjct: 257 DVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCL 316

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           H Q++  GY +++    ++I MY +CG  E A   F+ M   +  SW AMIA  G HG  
Sbjct: 317 HDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFA 376

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
             A++++ QM+  G+ P+ ITF++VL+AC+HAG ++EG R+F  M   Y + PG +HY  
Sbjct: 377 REALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGC 436

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
            +DLL RAG   EA ++I S+  +    +W +LLA CRIH +++L   +A +LF+L P +
Sbjct: 437 MVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSN 496

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEA 680
            G YVLL+N+YA+ GRW D  R+R L++DRG+ K PG S +E+  +VHVFLV D  HP+ 
Sbjct: 497 CGYYVLLANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQH 556

Query: 681 QAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT 740
           + +YKYLE+L +++++ GYVP+   VLHD++ ++KE  +  HSEKLAVAFG+M    G+T
Sbjct: 557 EKIYKYLEELSVKLQEAGYVPNMASVLHDVDEEEKEMIVRVHSEKLAVAFGVMNSIPGST 616

Query: 741 VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           + V+KNLR+CGDCH   K +SK+V REI+VRD KRFHHF+DG CSCGDYW
Sbjct: 617 IHVIKNLRVCGDCHTVIKLISKIVSREIIVRDAKRFHHFKDGLCSCGDYW 666



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 120/487 (24%), Positives = 196/487 (40%), Gaps = 106/487 (21%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            +  H   +  GF+    + + LID+Y K  KL  AR LFDEIP+ +IV  T+LI  Y  
Sbjct: 101 GKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQ 160

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
           +D+   A  +F +   +  +               NG                 D+    
Sbjct: 161 NDDAHEALMVFKEFLFEKSE--------------GNGEEV----------GTSVDSVAMI 196

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           SVLSA +  V  +     +H   +K G      V N L+  Y KC           +  +
Sbjct: 197 SVLSACSR-VSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKC---------GEVSLS 246

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           R+VFD+M E+D +SW +M+  Y +N     A E   GM +  G  +N             
Sbjct: 247 RKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYN------------- 293

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN-----ALV 328
                   E T ++++ ACA+ G  R+G  +H  +++            VNN     +++
Sbjct: 294 --------EVTLSTLLLACAHEGALRVGMCLHDQVIKMGY---------VNNVIMATSII 336

Query: 329 TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV 388
            +Y KCG+   AR+ F+ M E+++ SW A+                              
Sbjct: 337 DMYCKCGQAEMARNAFDGMKEKNVRSWTAM------------------------------ 366

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS- 447
            I+G   +G+  E L +F QM   G KP    F   + +C+  G LE G +    + H  
Sbjct: 367 -IAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEY 425

Query: 448 GYDSSLSAGNALITMYARCGVV-EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
             +  +     ++ +  R G + EA N + +     D V W +++AA   H    + +EL
Sbjct: 426 NVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIH----KDVEL 481

Query: 507 YEQMLKE 513
            E   +E
Sbjct: 482 AEISARE 488



 Score = 43.5 bits (101), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 6/137 (4%)

Query: 26  RNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ----PDI 81
           +N +++      H  + + G K  E  ++ L+        L     L D++ +     ++
Sbjct: 270 QNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNV 329

Query: 82  VARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMR 141
           +  T++I  Y      ++AR  F+   +K ++   + AMI  Y  +     A+++F  M 
Sbjct: 330 IMATSIIDMYCKCGQAEMARNAFD--GMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMI 387

Query: 142 RDDVKPDNFTFTSVLSA 158
              VKP+  TF SVL+A
Sbjct: 388 WAGVKPNYITFISVLAA 404


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 251/711 (35%), Positives = 388/711 (54%), Gaps = 69/711 (9%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+   T LI  Y+   + + A ++F +  +K  + + ++A+ITA++ + +   A+  FR 
Sbjct: 295 DLFVGTALITMYARCRSPEDAAQVFGR--MKQTNLITWSAIITAFADHGHCGEALRYFRM 352

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M+++ + P+  TF S+L+        E +  ++H  + + G    T++ NAL++VY +C 
Sbjct: 353 MQQEGILPNRVTFISLLNGFTTPSGLE-ELSRIHLLITEHGLDDTTTMRNALVNVYGRC- 410

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
            SP          AR VFD++   + +SW +M+  YV+ +  D A +    M +      
Sbjct: 411 ESP--------DDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQ----- 457

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                             IQ D   + +++ AC      R  K VH  +  +    +P  
Sbjct: 458 -----------------GIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSP-- 498

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
              V  +LV +Y K                               AG +D A+ + + M 
Sbjct: 499 --LVQTSLVNMYAK-------------------------------AGELDVAEVILQEMD 525

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
           E+ + +W V+I+G A +G   E L+ + +++LE        F   + +C    +L  G+ 
Sbjct: 526 EQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKM 585

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           +H+  V  G DS +   NAL  MY++CG +E A  +F++MP   +VSWN M+ A  QHG 
Sbjct: 586 IHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGE 645

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA 559
               ++L  +M +EG+  + ITF++VLS+C+HAGL+ EG +YF ++    GI    +HY 
Sbjct: 646 SEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYG 705

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
             +DLL RAGK  EA+  I  +P +P    W +LL  CR+  ++D G  AA +L +L P 
Sbjct: 706 CLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPG 765

Query: 620 HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPE 679
           ++   V+LSN+Y+  G W +AA++R+ M  R VKK PG S I+V NKVH F V DT+HP 
Sbjct: 766 NSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPR 825

Query: 680 AQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGA 739
           A  +Y  +E+L   MR+ GYVPDTK VLHD++ +QKE  L+ HSEKLA+AFGL+  P  +
Sbjct: 826 AAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPETS 885

Query: 740 TVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           ++ + KNLR+C DCH A KF+SK+ GREIVVRD  RFHHFRDG CSC DYW
Sbjct: 886 SLHIFKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 936



 Score =  172 bits (435), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 135/534 (25%), Positives = 240/534 (44%), Gaps = 80/534 (14%)

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
           YS   ++  A   F K  ++ R+ V +N MI+AYS   +   A+ LF  M  + V P+  
Sbjct: 2   YSRCGSLGDAVAAFGK--IRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAI 59

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           T  +VL++      E +  + +H   ++ G    T V  AL+++Y KC           +
Sbjct: 60  TLVAVLNSCGSF-RELRDGILVHALSLERGFFQNTLVATALLNMYGKC---------GTL 109

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
             A+ VF+EM E++ ++W  M+                 G+    G  W   +  +    
Sbjct: 110 LDAQSVFEEMAEKNVVTWNAML-----------------GVYSLQGCCWKLAVELFT--- 149

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
            +ML+  ++ +  T+ +V+++  +    R GK +H+ +  +E        + VN ALV  
Sbjct: 150 -RMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESE----HSLDVFVNTALVNT 204

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y KCG + +AR +F+ MP R + +WN+++SAY              ++ ER         
Sbjct: 205 YTKCGSLTDARKVFDGMPCRSVGTWNSMISAY--------------SISER--------- 241

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
           SG        E   +F +M+ EG +     F   + +C     L++G+ +   +  + ++
Sbjct: 242 SG--------EAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFE 293

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
             L  G ALITMYARC   E A  VF  M   + ++W+A+I A   HG+   A+  +  M
Sbjct: 294 LDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMM 353

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
            +EGILP+R+TF+++L+       ++E  R    +   +G+          +++  R   
Sbjct: 354 QQEGILPNRVTFISLLNGFTTPSGLEELSR-IHLLITEHGLDDTTTMRNALVNVYGRCES 412

Query: 571 FSEAKDVIDSLPFKPSAPIWEALLA---GCRIHGNIDLGIQAAEQLFQLMPHHA 621
             +A+ V D L   P+   W +++     C  H +       A QLF+ M    
Sbjct: 413 PDDARTVFDQLEL-PNLISWNSMIGIYVQCERHDD-------ALQLFRTMQQQG 458



 Score =  166 bits (420), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 143/568 (25%), Positives = 252/568 (44%), Gaps = 78/568 (13%)

Query: 66  LVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYS 125
           LV+A +L     Q  +VA T L+  Y     +  A+ +F +  +  ++ V +NAM+  YS
Sbjct: 79  LVHALSLERGFFQNTLVA-TALLNMYGKCGTLLDAQSVFEE--MAEKNVVTWNAMLGVYS 135

Query: 126 -HNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEE--KQCMQMHCTVVKSGTG 182
                   A+ELF  M  + VK +  TF +VL++   +V+ +  ++   +H  V +S   
Sbjct: 136 LQGCCWKLAVELFTRMLLEGVKANVITFLNVLNS---VVDPDALRKGKFIHSCVRESEHS 192

Query: 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLD 242
           L   V  AL++ Y KC S         +  AR+VFD MP R   +W +M++ Y       
Sbjct: 193 LDVFVNTALVNTYTKCGS---------LTDARKVFDGMPCRSVGTWNSMISAY------- 236

Query: 243 AAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGK 302
                   +SE  G A+      ++ + ++    R   D  T+ S++ AC N    + GK
Sbjct: 237 -------SISERSGEAF------FIFQRMQQEGERC--DRVTFLSILDACVNPETLQHGK 281

Query: 303 QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY 362
            V   +  T    + E  L V  AL+T+Y +C           + PE             
Sbjct: 282 HVRESISET----SFELDLFVGTALITMYARC-----------RSPE------------- 313

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
                  +A  +F  M++ NL++W+ +I+  A +G+  E L+ F  M+ EG  P    F 
Sbjct: 314 -------DAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFI 366

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
             +        LE   ++H  +   G D + +  NAL+ +Y RC   + A  VF+ +   
Sbjct: 367 SLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELP 426

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
           + +SWN+MI    Q      A++L+  M ++GI PDR+ F+T+L AC   G     R+  
Sbjct: 427 NLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACT-IGSHGRTRKLV 485

Query: 543 ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
                  G+          +++  +AG+   A+ ++  +  +     W  L+ G  +HG 
Sbjct: 486 HQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMD-EQQITAWNVLINGYALHGR 544

Query: 603 IDLGIQAAEQL-FQLMPHHAGTYVLLSN 629
               ++A ++L  + +P    T++ + N
Sbjct: 545 SREALEAYQKLQLEAIPVDKVTFISVLN 572



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 150/622 (24%), Positives = 271/622 (43%), Gaps = 93/622 (14%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+   T L+  Y+   ++  AR++F+  P +   T  +N+MI+AYS +     A  +F+ 
Sbjct: 194 DVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGT--WNSMISAYSISERSGEAFFIFQR 251

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M+++  + D  TF S+L A  +  E  +    +  ++ ++   L   V  ALI++Y +C 
Sbjct: 252 MQQEGERCDRVTFLSILDA-CVNPETLQHGKHVRESISETSFELDLFVGTALITMYARC- 309

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                  RS   AA+ VF  M + + ++W+ ++T +  + +   A  +   M +      
Sbjct: 310 -------RSPEDAAQ-VFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQE----- 356

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                G +   +  + L   L+ FT          SGL  L +    +LL TE     + 
Sbjct: 357 -----GILPNRVTFISL---LNGFT--------TPSGLEELSR---IHLLITE--HGLDD 395

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
           +  + NALV +Y +C   ++AR +F+Q+   +L+SWN+++  YV     D+A        
Sbjct: 396 TTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDA-------- 447

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
                                  L+LF  M+ +G +P    F   + +C  +G+    R+
Sbjct: 448 -----------------------LQLFRTMQQQGIQPDRVNFMTILGACT-IGSHGRTRK 483

Query: 440 LHAQLV-HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           L  Q V  SG   S     +L+ MYA+ G ++ A  +   M      +WN +I     HG
Sbjct: 484 LVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHG 543

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
               A+E Y+++  E I  D++TF++VL+AC  +  + EG+     M     +  G D  
Sbjct: 544 RSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGK-----MIHSNAVECGLDSD 598

Query: 559 A----RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
                   ++  + G    A+ + DS+P + SA  W  +L     HG  +  ++   ++ 
Sbjct: 599 VIVKNALTNMYSKCGSMENARRIFDSMPIR-SAVSWNGMLQAYAQHGESEEVLKLIRKME 657

Query: 615 QLMPHHAG-TYVLLSNMYANLGRWDDAAR-VRKLMRDRGVKKEPGCSWIEVDNKVHVFLV 672
           Q      G T+V + +  ++ G   +  +    L  DRG         IEV  + +  LV
Sbjct: 658 QEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRG---------IEVKTEHYGCLV 708

Query: 673 DDTAHP-EAQAVYKYLEQLVLE 693
           D      + Q   KY+ ++ LE
Sbjct: 709 DLLGRAGKLQEAEKYISKMPLE 730



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 106/428 (24%), Positives = 184/428 (42%), Gaps = 61/428 (14%)

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
           DA   F    + NV V+WN +IS Y                 +Y S   A A   LF   
Sbjct: 10  DAVAAFGKIRARNV-VSWNVMISAYS----------------SYKSFQEALA---LF--- 46

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARD---IFNQMPER----DLVS 354
              HA LL   A        P    LV +   CG   E RD   +     ER    + + 
Sbjct: 47  ---HAMLLEGVA--------PNAITLVAVLNSCGSFRELRDGILVHALSLERGFFQNTLV 95

Query: 355 WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG-EEGLKLFSQMRLEG 413
             A+L+ Y   G + +A+S+FE M E+N+++W  M+   +  G   +  ++LF++M LEG
Sbjct: 96  ATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEG 155

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473
            K     F   + S     AL  G+ +H+ +  S +   +    AL+  Y +CG +  A 
Sbjct: 156 VKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDAR 215

Query: 474 CVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533
            VF+ MP     +WN+MI+A         A  ++++M +EG   DR+TFL++L AC +  
Sbjct: 216 KVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPE 275

Query: 534 LVKEGRRYFETMHGPYGIPPGEDHY-------ARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
            ++ G+   E++         E  +          I +  R     +A  V   +  + +
Sbjct: 276 TLQHGKHVRESI--------SETSFELDLFVGTALITMYARCRSPEDAAQVFGRMK-QTN 326

Query: 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQ--LMPHHAGTYVLLSNMYANLGRWDDAARVR 644
              W A++     HG+    ++    + Q  ++P+   T++ L N +      ++ +R+ 
Sbjct: 327 LITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRV-TFISLLNGFTTPSGLEELSRIH 385

Query: 645 KLMRDRGV 652
            L+ + G+
Sbjct: 386 LLITEHGL 393



 Score = 56.2 bits (134), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 44/77 (57%)

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           MY+RCG +  A   F  +   + VSWN MI+A   + +   A+ L+  ML EG+ P+ IT
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 522 FLTVLSACNHAGLVKEG 538
            + VL++C     +++G
Sbjct: 61  LVAVLNSCGSFRELRDG 77


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 268/779 (34%), Positives = 401/779 (51%), Gaps = 106/779 (13%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           ++ A T+L+  Y    +V    E+F   P K  + V + +++T  +H       + LF  
Sbjct: 134 EVSAGTSLVDMYMKCGSVCEGIEVFEGMPKK--NVVTWTSLLTGCAHAQMHSEVMALFFR 191

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           MR + + P+ FTF SVLSA+A     +    ++H   VK G      V N+L+++Y KC 
Sbjct: 192 MRAEGIWPNPFTFASVLSAVASQGALDLG-QRVHAQSVKFGCRSSVFVCNSLMNMYAKC- 249

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                    L+  A+ VF+ M  RD +SW T+M G   N+    A +        +G   
Sbjct: 250 --------GLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMG--- 298

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                              ++ + TY +VI  CAN     L +Q+H+ +L+     T   
Sbjct: 299 -------------------KMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGN- 338

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
              V  AL   Y KCG++ +A +IF+     R++VSW AI+S  +  G I  A  LF  M
Sbjct: 339 ---VMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRM 395

Query: 379 RERNLLS-----------------------------------WTVMISGLAQNGYGEEGL 403
           RE  ++                                     T +++  ++ G  E+ L
Sbjct: 396 REDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDAL 455

Query: 404 KLF-------------------------------SQMRLEGFKPCDYAFAGAITSCAGLG 432
            +F                               ++M ++G KP ++  +  I +CA   
Sbjct: 456 SIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPS 515

Query: 433 A-LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
           A ++ GRQ HA  +   Y  ++   +AL++MY+R G +++A  VF    + D VSWN+MI
Sbjct: 516 AGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMI 575

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
           +   QHG   +AIE + QM   GI  D +TFL V+  C H GLV EG++YF++M   + I
Sbjct: 576 SGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKI 635

Query: 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611
            P  +HYA  +DL  RAGK  E   +I  +PF   A +W  LL  CR+H N++LG  +A+
Sbjct: 636 NPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSAD 695

Query: 612 QLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFL 671
           +L  L PH + TYVLLSN+YA  G+W +   VRKLM  R VKKE GCSWI++ NKVH F+
Sbjct: 696 KLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFI 755

Query: 672 VDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFG 731
             D +HP +  +YK L+ ++  +++ GY P+T FVLHD+  DQKE  L  HSE+LA+AFG
Sbjct: 756 AFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFG 815

Query: 732 LMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           L+  P G  ++++KNLR+CGDCH   K +S +  REI++RD  RFHHF  G CSCGD+W
Sbjct: 816 LIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 153/330 (46%), Gaps = 35/330 (10%)

Query: 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
           + +D  T + V+ AC +     LG+Q+H   ++       E S     +LV +Y KCG V
Sbjct: 95  VLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKC-GHDRGEVS--AGTSLVDMYMKCGSV 151

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNG 397
            E  ++F                               E M ++N+++WT +++G A   
Sbjct: 152 CEGIEVF-------------------------------EGMPKKNVVTWTSLLTGCAHAQ 180

Query: 398 YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN 457
              E + LF +MR EG  P  + FA  +++ A  GAL+ G+++HAQ V  G  SS+   N
Sbjct: 181 MHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCN 240

Query: 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
           +L+ MYA+CG+VE A  VFN M   D VSWN ++A L  +     A++L+ +        
Sbjct: 241 SLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKM 300

Query: 518 DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577
            + T+ TV+  C +   +   R+    +   +G     +      D   + G+ ++A ++
Sbjct: 301 TQSTYATVIKLCANLKQLALARQLHSCVL-KHGFHLTGNVMTALADAYSKCGELADALNI 359

Query: 578 IDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
                   +   W A+++GC  +G+I L +
Sbjct: 360 FSMTTGSRNVVSWTAIISGCIQNGDIPLAV 389



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 131/294 (44%), Gaps = 43/294 (14%)

Query: 70  RTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSN 129
           +T +  IP       T L+A+YS   + + A  +F    ++ +D V ++AM++ ++   +
Sbjct: 428 KTNYQHIPS----VGTALLASYSKFGSTEDALSIFKM--IEQKDVVAWSAMLSCHAQAGD 481

Query: 130 GHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLN 189
              A  LF  M    +KP+ FT +SV+ A A       Q  Q H   +K        V +
Sbjct: 482 CEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSS 541

Query: 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD 249
           AL+S+Y         S +  + +A+ VF+   +RD +SW +M++GY ++ Y   A E   
Sbjct: 542 ALVSMY---------SRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFR 592

Query: 250 GMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
            M            SG            IQ+D  T+ +VI  C ++GL   G+Q    ++
Sbjct: 593 QMEA----------SG------------IQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMV 630

Query: 310 RT-EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
           R  +  PT E        +V LY + GK++E   +   MP     + W  +L A
Sbjct: 631 RDHKINPTMEH----YACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGA 680



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 91/208 (43%), Gaps = 3/208 (1%)

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD-SS 452
           A+ G   E L  FS  R  G        +  + +C  +     G QLH   V  G+D   
Sbjct: 75  ARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGE 134

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           +SAG +L+ MY +CG V     VF  MP  + V+W +++         +  + L+ +M  
Sbjct: 135 VSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRA 194

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
           EGI P+  TF +VLSA    G +  G+R        +G           +++  + G   
Sbjct: 195 EGIWPNPFTFASVLSAVASQGALDLGQR-VHAQSVKFGCRSSVFVCNSLMNMYAKCGLVE 253

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIH 600
           +AK V + +  +     W  L+AG +++
Sbjct: 254 DAKSVFNWMETRDMVS-WNTLMAGLQLN 280


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 253/716 (35%), Positives = 389/716 (54%), Gaps = 71/716 (9%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           +P +    +L+ AY     +  A ++F++  +  RD   +NAM++    N+    A+ LF
Sbjct: 100 RPSVFTSGSLVHAYLRFGRISEAYKVFDE--MSERDVPAWNAMLSGLCRNARAAEAVGLF 157

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
             M  + V  D  T +SVL  + +++ ++   + MH   VK G      V NALI VY K
Sbjct: 158 GRMVGEGVAGDTVTVSSVLP-MCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGK 216

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
                      ++  A+ VF  M  RD ++W ++++G  +     AA +   GM      
Sbjct: 217 L---------GMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRG---- 263

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                 SG            +  D  T  S+ SA A  G  R  K +H Y++R       
Sbjct: 264 ------SG------------VSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRG----- 300

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
                         W                  D+++ NAI+  Y     I+ A+ +F++
Sbjct: 301 --------------WDV---------------DDIIAGNAIVDMYAKLSNIEAAQRMFDS 331

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RLEGFKPCDYAFAGAITSCAGLGALEN 436
           M  ++ +SW  +I+G  QNG   E ++ +  M + EG K     F   + + + LGAL+ 
Sbjct: 332 MPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQ 391

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           G ++HA  +  G +  +  G  LI +YA+CG +  A  +F  MP   +  WNA+I+ LG 
Sbjct: 392 GMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGV 451

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
           HG+GA A+ L+ +M +EGI PD +TF+++L+AC+HAGLV +GR +F+ M   Y I P   
Sbjct: 452 HGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAK 511

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           HYA   D+L RAG+  EA + I ++P KP + +W ALL  CRIHGN+++G  A++ LF+L
Sbjct: 512 HYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFEL 571

Query: 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTA 676
            P + G YVL+SNMYA +G+WD    VR L+R + ++K PG S IEV   V+VF   +  
Sbjct: 572 DPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQT 631

Query: 677 --HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMK 734
             HP+ + +   L  L+ ++R +GYV D  FVL D+E D+KE+ L+ HSE+LA+AFG++ 
Sbjct: 632 EPHPQHEEIQAELRSLLAKIRSVGYVSDYSFVLQDVEDDEKEHILNNHSERLAIAFGIIN 691

Query: 735 LPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            P    + + KNLR+CGDCHNA K++S++  REI+VRD  RFHHF+DG CSCGD+W
Sbjct: 692 TPSRTPLHIYKNLRVCGDCHNATKYISQITEREIIVRDSNRFHHFKDGHCSCGDFW 747



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 146/496 (29%), Positives = 224/496 (45%), Gaps = 89/496 (17%)

Query: 118 NAMITAYSHNSNGHAAIELFRDMRR--DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
           N +I A+S  +    A  L R +       +PD FTF S++ A            Q+H  
Sbjct: 37  NTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRA----APSNASAAQLHAC 92

Query: 176 VVKSG---TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMM 232
            ++ G     +FTS   +L+  Y++            +  A +VFDEM ERD  +W  M+
Sbjct: 93  ALRLGLVRPSVFTS--GSLVHAYLRF---------GRISEAYKVFDEMSERDVPAWNAML 141

Query: 233 TGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISAC 292
           +G  +N     AR      +E VG+    +  G            +  D  T +SV+  C
Sbjct: 142 SGLCRN-----ARA-----AEAVGLFGRMVGEG------------VAGDTVTVSSVLPMC 179

Query: 293 ANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
                  LG QV A ++   A K   +  L V NAL+ +Y K G + EA+ +F+ M  RD
Sbjct: 180 V-----LLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRD 234

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
           LV+WN+I+                               SG  Q G     LK+F  MR 
Sbjct: 235 LVTWNSII-------------------------------SGCEQRGQTAAALKMFQGMRG 263

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD-SSLSAGNALITMYARCGVVE 470
            G  P         ++ A  G   + + LH  ++  G+D   + AGNA++ MYA+   +E
Sbjct: 264 SGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIE 323

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK-EGILPDRITFLTVLSAC 529
           AA  +F++MP  DSVSWN +I    Q+G    A+E Y  M K EG+   + TF++VL A 
Sbjct: 324 AAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAY 383

Query: 530 NHAGLVKEGRRYFETMHG-PYGIPPGEDHYAR--FIDLLCRAGKFSEAKDVIDSLPFKPS 586
           +H G +++G R    MH     I    D Y     IDL  + GK +EA  + + +P + +
Sbjct: 384 SHLGALQQGMR----MHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRST 439

Query: 587 APIWEALLAGCRIHGN 602
            P W A+++G  +HG+
Sbjct: 440 GP-WNAIISGLGVHGH 454



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 142/351 (40%), Gaps = 77/351 (21%)

Query: 34  ARSVHAHMISSGFKPREHII-NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           A+S+H +++  G+   + I  N ++D+Y K   +  A+ +FD +P  D            
Sbjct: 289 AKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQD------------ 336

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR-DDVKPDNFT 151
                                +V +N +IT Y  N   + A+E +  M++ + +K    T
Sbjct: 337 ---------------------SVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGT 375

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           F SVL A + +    +Q M+MH   +K G  +   V   LI +Y KC           + 
Sbjct: 376 FVSVLPAYSHL-GALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKC---------GKLA 425

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A  +F++MP R    W  +++G   + +   A      M +                  
Sbjct: 426 EAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQE----------------- 468

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT-EAKPTPEFSLPVNNALVTL 330
                 I+ D  T+ S+++AC+++GL   G+     +  T +  P  +        +  +
Sbjct: 469 -----GIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHY----ACMADM 519

Query: 331 YWKCGKVNEARDIFNQMPER-DLVSWNAILSAYVSAGLIDEAK----SLFE 376
             + G+++EA +    MP + D   W A+L A    G ++  K    +LFE
Sbjct: 520 LGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFE 570



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 18/209 (8%)

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY-DSSLSAGNALITMYARCGVVEAA 472
           F+P  + F   I +     +  +  QLHA  +  G    S+    +L+  Y R G +  A
Sbjct: 66  FRPDGFTFPSLIRAAP---SNASAAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEA 122

Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
             VF+ M   D  +WNAM++ L ++   A A+ L+ +M+ EG+  D +T  +VL  C   
Sbjct: 123 YKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMC--- 179

Query: 533 GLVKEGRRYFETMHGPYGIPPGEDHYA----RFIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
             V  G +    +   Y +  G D         ID+  + G   EA+ V   +  +    
Sbjct: 180 --VLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECR-DLV 236

Query: 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
            W ++++GC   G       AA ++FQ M
Sbjct: 237 TWNSIISGCEQRGQ----TAAALKMFQGM 261


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 260/802 (32%), Positives = 422/802 (52%), Gaps = 97/802 (12%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           VH H +  GF+   +I N LID+Y + + L  AR +F+E+                    
Sbjct: 143 VHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSN------------------ 184

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
                          RD+V +N++I+ Y  N     A++++   R   + PD FT +SVL
Sbjct: 185 ---------------RDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVL 229

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
            A   ++   K+ + +H  + K G      + N L+S+Y K     F   R     ARRV
Sbjct: 230 LACGSLMAV-KEGVAVHGVIEKIGIAGDVIIGNGLLSMYFK-----FERLRE----ARRV 279

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAA----REFLDGMSENV----------GVAWNAL 262
           F +M  +D ++W TM+ GY +    +A+     + +DG   ++          G + +  
Sbjct: 280 FSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSGDLQ 339

Query: 263 ISGYVHR-------ELKMLMLRIQLDEF----------------------TYTSVISACA 293
           +  +VH+       E   +   I +D +                      T+ S+I+   
Sbjct: 340 VGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYT 399

Query: 294 NSGLFRLGKQVHAYLLRTEAKP-TPEFSLPVNNALVTLYWKCGKVNEAR----DIFNQMP 348
            SG ++ G +    +++ E KP +  F L     L++++ +   +N+ R    D+     
Sbjct: 400 QSGYYKEGLESFK-MMKMERKPDSVTFVL-----LLSIFSQLADINQGRGIHCDVIKFGF 453

Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQ 408
           E +L+  N++L  Y   G +D+   +F  M   +++SW  +I+          G ++ ++
Sbjct: 454 EAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINE 513

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
           MR EG  P +    G +  C+ L     G+++H  +  SG++S++  GNALI MY++CG 
Sbjct: 514 MRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGS 573

Query: 469 VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
           +E    VF  M   D V+W A+I+A G +G G +A++ ++ M   G+LPD + F+  + A
Sbjct: 574 LENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFA 633

Query: 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
           C+H+G+VKEG R+F+ M   Y + P  +HYA  +DLL R+G  ++A++ I S+P KP A 
Sbjct: 634 CSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDAS 693

Query: 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648
           +W ALL+ CR  GN ++  + ++++ +L     G YVL+SN+YA LG+WD    VR  M+
Sbjct: 694 LWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMK 753

Query: 649 DRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLH 708
            +G+KKEPG SWIE+  +V+VF   D +  +   V   LE LV  M K GYV D +F LH
Sbjct: 754 TKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVRLMAKEGYVADLQFALH 813

Query: 709 DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREI 768
           D+E D K   L  HSE+LA+AFGL+    G+ + V+KNLR+CGDCH   K+++K++ REI
Sbjct: 814 DVEEDDKRDMLCGHSERLAIAFGLLNTKPGSPLLVMKNLRVCGDCHTVTKYITKIMQREI 873

Query: 769 VVRDGKRFHHFRDGKCSCGDYW 790
           +VRD  RFH F+DG CSCGD+W
Sbjct: 874 LVRDANRFHRFKDGACSCGDHW 895



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 174/386 (45%), Gaps = 47/386 (12%)

Query: 259 WNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
           WN++I    H  L         +M   ++Q D FT+ SVI++CA      LG  VH + +
Sbjct: 89  WNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAM 148

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLID 369
                   E  L + NAL+ +Y                            S +V    +D
Sbjct: 149 EMGF----ESDLYIGNALIDMY----------------------------SRFVD---LD 173

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
            A+ +FE M  R+ +SW  +ISG   NG+ E+ L ++ + R+ G  P  +  +  + +C 
Sbjct: 174 NARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACG 233

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
            L A++ G  +H  +   G    +  GN L++MY +   +  A  VF+ M   DSV+WN 
Sbjct: 234 SLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNT 293

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY 549
           MI    Q G    +++L+  M+ +G +PD ++  + + AC  +G ++ G+   + + G  
Sbjct: 294 MICGYAQLGRHEASVKLFMDMI-DGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGS- 351

Query: 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609
           G           ID+  + G    A++V D+   K S   W +L+ G    G    G+++
Sbjct: 352 GFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVT-WNSLINGYTQSGYYKEGLES 410

Query: 610 AEQLFQLMPHHAGTYVLLSNMYANLG 635
            + +       + T+VLL ++++ L 
Sbjct: 411 FKMMKMERKPDSVTFVLLLSIFSQLA 436



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 113/482 (23%), Positives = 190/482 (39%), Gaps = 103/482 (21%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           + + VH ++I SGF+      N LID+Y K   L+ A+ +FD     D V   +LI  Y+
Sbjct: 340 VGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYT 399

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
            S   K   E F                                   M + + KPD+ TF
Sbjct: 400 QSGYYKEGLESFK----------------------------------MMKMERKPDSVTF 425

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
             +LS  + +  +  Q   +HC V+K G      + N+L+ VY KC           M  
Sbjct: 426 VLLLSIFSQLA-DINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKC---------GEMDD 475

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
             +VF  M   D +SW T++   V  D      + ++ M                     
Sbjct: 476 LLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTE------------------ 517

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                +  DE T   ++  C+   + R GK++H Y+     K   E ++P+ NAL+ +Y 
Sbjct: 518 ----GLMPDEATVLGILPMCSLLAVRRQGKEIHGYIF----KSGFESNVPIGNALIEMYS 569

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           KCG +     +F  M E+D+V+W A++SA+                              
Sbjct: 570 KCGSLENCIKVFKYMKEKDVVTWTALISAF------------------------------ 599

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL-VHSGYDS 451
               G G++ LK F  M L G  P   AF   I +C+  G ++ G +   ++      + 
Sbjct: 600 -GMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEP 658

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQM 510
            +     ++ + AR G++  A     +MP   D+  W A+++A    GN   A  + +++
Sbjct: 659 RMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKI 718

Query: 511 LK 512
           L+
Sbjct: 719 LE 720



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 105/218 (48%), Gaps = 8/218 (3%)

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
           N+  W  +I  L  NG   + L  +++MR +  +P  + F   I SCA +  LE G  +H
Sbjct: 85  NVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVH 144

Query: 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGA 501
              +  G++S L  GNALI MY+R   ++ A  VF  M N DSVSWN++I+    +G   
Sbjct: 145 EHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWE 204

Query: 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG---PYGIPPGEDHY 558
            A+++Y +    G++PD  T  +VL AC     VKEG      +HG     GI       
Sbjct: 205 DALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGV----AVHGVIEKIGIAGDVIIG 260

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
              + +  +  +  EA+ V   +  K S   W  ++ G
Sbjct: 261 NGLLSMYFKFERLREARRVFSKMAVKDSVT-WNTMICG 297



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 14/174 (8%)

Query: 28  PITSSLA-----RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIV 82
           P+ S LA     + +H ++  SGF+    I N LI++Y K   L     +F  + + D+V
Sbjct: 531 PMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVV 590

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLK--MRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
             T LI+A+      K A + F    L   + D+V + A I A SH+      +  F  M
Sbjct: 591 TWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRM 650

Query: 141 RRD-DVKPDNFTFTSVLSALA---LIVEEEKQCMQMHCTVVKSGTGLFTSVLNA 190
           + D +++P    +  V+  LA   L+ + E+  + M    +K    L+ ++L+A
Sbjct: 651 KTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMP---MKPDASLWGALLSA 701


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 258/718 (35%), Positives = 381/718 (53%), Gaps = 78/718 (10%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + D+   T L+  Y+    +  A+ +F  + +  RD V +NAMI   S       A++L 
Sbjct: 141 ESDVFVCTALVDFYAKCGILVEAQRLF--SSMSHRDVVAWNAMIAGCSLYGLCDDAVQLI 198

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ---MHCTVVKSGTGLFTSVLNALISV 194
             M+ + + P++ T   VL      V E K       +H   V+        V   L+ +
Sbjct: 199 MQMQEEGICPNSSTIVGVLPT----VGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDM 254

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           Y KC    +         AR++FD M  R+E+SW+ M+ GYV +D +  A E  D M   
Sbjct: 255 YAKCQCLLY---------ARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQM--- 302

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDE--FTYTSVISACANSGLFRLGKQVHAYLLRTE 312
                               +L+  +D    T  SV+ ACA       G+++H Y++   
Sbjct: 303 --------------------ILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYII--- 339

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
                               K G V             D++  N +LS Y   G+ID+A 
Sbjct: 340 --------------------KLGSV------------LDILLGNTLLSMYAKCGVIDDAI 367

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
             F+ M  ++ +S++ ++SG  QNG     L +F  M+L G  P      G + +C+ L 
Sbjct: 368 RFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLA 427

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
           AL++G   H  L+  G+ +     NALI MY++CG +  A  VFN M   D VSWNAMI 
Sbjct: 428 ALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMII 487

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552
             G HG G  A+ L+  +L  G+ PD ITF+ +LS+C+H+GLV EGR +F+ M   + I 
Sbjct: 488 GYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIV 547

Query: 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
           P  +H    +D+L RAG   EA   I ++PF+P   IW ALL+ CRIH NI+LG + +++
Sbjct: 548 PRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKK 607

Query: 613 LFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLV 672
           +  L P   G +VLLSN+Y+  GRWDDAA +R   +D G+KK PGCSWIE++  VH F+ 
Sbjct: 608 IQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVG 667

Query: 673 DDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGL 732
            D +H +   + + LE+L++EM++LGY  +  FV  D+E ++KE  L  HSEKLA+AFG+
Sbjct: 668 GDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGI 727

Query: 733 MKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           + L  G  + V KNLR+CGDCH A KFM+ +  REI VRD  RFHHF++G C+CGD+W
Sbjct: 728 LNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 116/452 (25%), Positives = 195/452 (43%), Gaps = 81/452 (17%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           ++H   +K+ +   +SVL+ L  +Y+ C         + +  ARR+FDE+P    + W  
Sbjct: 29  KIHQHFLKNTSNADSSVLHKLTRLYLSC---------NQVVLARRLFDEIPNPSVILWNQ 79

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++  Y                      AWN    G +     ML L ++ +++TY  V+ 
Sbjct: 80  IIRAY----------------------AWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLK 117

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTP-EFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
           AC+       G ++H++     AK    E  + V  ALV  Y KCG + EA+ +F+ M  
Sbjct: 118 ACSGLLAIEDGVEIHSH-----AKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSH 172

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
           RD+V+WNA+++     GL D+A                               ++L  QM
Sbjct: 173 RDVVAWNAMIAGCSLYGLCDDA-------------------------------VQLIMQM 201

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
           + EG  P      G + +     AL +G+ LH   V   +D+ +  G  L+ MYA+C  +
Sbjct: 202 QEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCL 261

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM-LKEGILPDRITFLTVLSA 528
             A  +F+ M   + VSW+AMI           A+EL++QM LK+ + P  +T  +VL A
Sbjct: 262 LYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRA 321

Query: 529 CNHAGLVKEGRR---YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP 585
           C     +  GR+   Y   +     I  G       + +  + G   +A    D +  K 
Sbjct: 322 CAKLTDLSRGRKLHCYIIKLGSVLDILLGN----TLLSMYAKCGVIDDAIRFFDEMNPKD 377

Query: 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           S   + A+++GC  +GN       A  +F++M
Sbjct: 378 SVS-FSAIVSGCVQNGN----AAVALSIFRMM 404



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 158/369 (42%), Gaps = 50/369 (13%)

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
            Y  ++ AC  S      K++H + L    K T      V + L  LY  C +V  AR +
Sbjct: 10  NYLHLLEACIQSKSLTEAKKIHQHFL----KNTSNADSSVLHKLTRLYLSCNQVVLARRL 65

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
           F+++P   ++                                W  +I   A NG  +  +
Sbjct: 66  FDEIPNPSVIL-------------------------------WNQIIRAYAWNGPFDGAI 94

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
            L+  M   G +P  Y +   + +C+GL A+E+G ++H+     G +S +    AL+  Y
Sbjct: 95  DLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFY 154

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
           A+CG++  A  +F++M + D V+WNAMIA    +G    A++L  QM +EGI P+  T +
Sbjct: 155 AKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIV 214

Query: 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH----YARFIDLLCRAGKFSEAKDVID 579
            VL     A  +  G+     +HG Y +    D+        +D+  +      A+ + D
Sbjct: 215 GVLPTVGEAKALGHGK----ALHG-YCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFD 269

Query: 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA--GTYVLLSNMYANLGRW 637
            +  +     W A++ G   +   D   +A E   Q++   A   T V L ++     + 
Sbjct: 270 VMGVRNEVS-WSAMIGG---YVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKL 325

Query: 638 DDAARVRKL 646
            D +R RKL
Sbjct: 326 TDLSRGRKL 334


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 254/706 (35%), Positives = 389/706 (55%), Gaps = 93/706 (13%)

Query: 96  NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV 155
           +++ AR +F+K  ++ ++ V +  MIT YS       A++LF  +   +  PD FT TS+
Sbjct: 197 DIQSARMVFDK--MQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSL 254

Query: 156 LSALALIVEEEKQCM--QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           LSA    VE E   +  Q+H  V++SG             V+V C               
Sbjct: 255 LSA---CVELEFFSLGKQLHSWVIRSGLA---------SDVFVGC--------------- 287

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE--- 270
                           T++  Y K+  ++ +R+  + M  +  ++W ALISGYV      
Sbjct: 288 ----------------TLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQ 331

Query: 271 ------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
                   ML   +  + FT++SV+ ACA+   F +GKQ+H          T +  L   
Sbjct: 332 EAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHG--------QTIKLGLSTI 383

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
           N +                            N++++ Y  +G ++ A+  F  + E+NL+
Sbjct: 384 NCV---------------------------GNSLINMYARSGTMECARKAFNILFEKNLI 416

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
           S+       A+    +E      ++   G     + +A  ++  A +G +  G Q+HA +
Sbjct: 417 SYNTAADANAKALDSDESFN--HEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALI 474

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
           V SG+ ++L   NALI+MY++CG  EAA  VFN M   + ++W ++I+   +HG   +A+
Sbjct: 475 VKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKAL 534

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
           EL+ +ML+ G+ P+ +T++ VLSAC+H GL+ E  ++F +MH  + I P  +HYA  +DL
Sbjct: 535 ELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDL 594

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624
           L R+G   EA + I+S+PF   A +W   L  CR+H N  LG  AA+++ +  PH   TY
Sbjct: 595 LGRSGLLLEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATY 654

Query: 625 VLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVY 684
           +LLSN+YA+ GRWDD A +RK M+ + + KE G SWIEVDN+VH F V DT+HP+A+ +Y
Sbjct: 655 ILLSNLYASEGRWDDVAALRKSMKQKKLIKETGYSWIEVDNQVHKFHVGDTSHPQARKIY 714

Query: 685 KYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVL 744
             L++L L+++ LGY+P+T FVLHD+E +QKE  L  HSEK+AVA+ L+  P    +RV 
Sbjct: 715 DELDELALKIKNLGYIPNTDFVLHDVEDEQKEQYLFQHSEKIAVAYALISTPKPKPIRVF 774

Query: 745 KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KNLR+CGDCH A K++S V GREIVVRD  RFHH +DGKCSC DYW
Sbjct: 775 KNLRVCGDCHTAIKYISIVTGREIVVRDANRFHHIKDGKCSCNDYW 820



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 139/594 (23%), Positives = 250/594 (42%), Gaps = 98/594 (16%)

Query: 65  KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
           KL++ + +   +P  D V   +LI  YS   + + A  +F       RD V ++A+I+ +
Sbjct: 59  KLLHHKLIDSGLPL-DSVLLNSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCF 117

Query: 125 SHNSNGHAAIELFRDM---RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGT 181
           ++NS    A+  F  M    R+ + P+ + FT++L + +            +     +G 
Sbjct: 118 ANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCS------------NPLFFTTGL 165

Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMG----AARRVFDEMPERDELSWTTMMTGYVK 237
            +F  +L         CV    +   +  G    +AR VFD+M  ++ ++WT M+T Y +
Sbjct: 166 AIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQ 225

Query: 238 NDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGL 297
              LD A +                         ++L+     D+FT TS++SAC     
Sbjct: 226 LGLLDDAVDLF----------------------CRLLVSEYTPDKFTLTSLLSACVELEF 263

Query: 298 FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA 357
           F LGKQ+H++++R+         + V   LV +Y K   V  +R IFN M   +++SW A
Sbjct: 264 FSLGKQLHSWVIRSGLAS----DVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTA 319

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
           ++S YV                               Q+   +E +KLF  M      P 
Sbjct: 320 LISGYV-------------------------------QSRQEQEAIKLFCNMLHGHVTPN 348

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
            + F+  + +CA L     G+QLH Q +  G  +    GN+LI MYAR G +E A   FN
Sbjct: 349 CFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFN 408

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE----GILPDRITFLTVLSACNHAG 533
            +   + +S+N    A       A+A++  E    E    G+     T+  +LS     G
Sbjct: 409 ILFEKNLISYNTAADA------NAKALDSDESFNHEVEHTGVGASPFTYACLLSGAACIG 462

Query: 534 LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEAL 593
            + +G +    +    G           I +  + G    A  V + + ++ +   W ++
Sbjct: 463 TIVKGEQ-IHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYR-NVITWTSI 520

Query: 594 LAGCRIHGNIDLGIQAAEQLFQLM-----PHHAGTYVLLSNMYANLGRWDDAAR 642
           ++G   HG      +A E  ++++     P+   TY+ + +  +++G  D+A +
Sbjct: 521 ISGFAKHG---FATKALELFYEMLEIGVKPNEV-TYIAVLSACSHVGLIDEAWK 570



 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 103/425 (24%), Positives = 190/425 (44%), Gaps = 79/425 (18%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+    TL+  Y+ S  V+ +R++FN   +   + + + A+I+ Y  +     AI+LF +
Sbjct: 282 DVFVGCTLVDMYAKSAAVENSRKIFN--TMLHHNVMSWTALISGYVQSRQEQEAIKLFCN 339

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M    V P+ FTF+SVL A A +  +     Q+H   +K G      V N+LI++Y +  
Sbjct: 340 MLHGHVTPNCFTFSSVLKACASL-PDFGIGKQLHGQTIKLGLSTINCVGNSLINMYAR-- 396

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                     M  AR+ F+ + E++ +S+ T      K   LD+   F +   E+ GV  
Sbjct: 397 -------SGTMECARKAFNILFEKNLISYNTAADANAKA--LDSDESF-NHEVEHTGVG- 445

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                                  FTY  ++S  A  G    G+Q+HA ++++        
Sbjct: 446 --------------------ASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGT---- 481

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
           +L +NNAL+++Y KCG    A  +FN M  R++++W +I+S +                 
Sbjct: 482 NLCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGF----------------- 524

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
                         A++G+  + L+LF +M   G KP +  +   +++C+ +G ++   +
Sbjct: 525 --------------AKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWK 570

Query: 440 LHAQLVHSGYDSSLSAG----NALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAAL 494
            H   +H  Y+ S+S        ++ +  R G++  A    N+MP + D++ W   + + 
Sbjct: 571 -HFNSMH--YNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFLGSC 627

Query: 495 GQHGN 499
             H N
Sbjct: 628 RVHRN 632



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 186/405 (45%), Gaps = 78/405 (19%)

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ---------MHCTVVKSGTGLFTSV 187
           F  +R+   + D  T TS L   +L++   K C++         +H  ++ SG  L + +
Sbjct: 21  FESLRKAISRLD-LTTTSPLIKSSLLL---KACIRSGNLELGKLLHHKLIDSGLPLDSVL 76

Query: 188 LNALISVYVKCVSSPFVSSRSLMGAARRVFDEMP--ERDELSWTTMMTGYVKNDYLDAAR 245
           LN+LI++Y KC              A  +F  M   +RD +SW+ +++ +  N     +R
Sbjct: 77  LNSLITLYSKCGD---------WENALSIFRNMGHHKRDLVSWSAIISCFANNSM--ESR 125

Query: 246 EFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
             L                 ++H  L+     I  +E+ +T+++ +C+N   F  G  + 
Sbjct: 126 ALLT----------------FLHM-LQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIF 168

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365
           A+LL+T    +    + V  AL+ ++ K                                
Sbjct: 169 AFLLKTGYFDS---HVCVGCALIDMFTK-------------------------------G 194

Query: 366 GL-IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
           GL I  A+ +F+ M+ +NL++WT+MI+  +Q G  ++ + LF ++ +  + P  +     
Sbjct: 195 GLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSL 254

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           +++C  L     G+QLH+ ++ SG  S +  G  L+ MYA+   VE +  +FNTM + + 
Sbjct: 255 LSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNV 314

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           +SW A+I+   Q      AI+L+  ML   + P+  TF +VL AC
Sbjct: 315 MSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKAC 359



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 137/318 (43%), Gaps = 48/318 (15%)

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN----NALVTLYWKCGKVNEARDI 343
           ++ AC  SG   LGK +H  L+ +         LP++    N+L+TLY KCG        
Sbjct: 45  LLKACIRSGNLELGKLLHHKLIDS--------GLPLDSVLLNSLITLYSKCG-------- 88

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
                      W   LS + + G             +R+L+SW+ +IS  A N      L
Sbjct: 89  ----------DWENALSIFRNMG-----------HHKRDLVSWSAIISCFANNSMESRAL 127

Query: 404 KLFSQM---RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY-DSSLSAGNAL 459
             F  M         P +Y F   + SC+       G  + A L+ +GY DS +  G AL
Sbjct: 128 LTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCAL 187

Query: 460 ITMYARCGV-VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           I M+ + G+ +++A  VF+ M + + V+W  MI    Q G    A++L+ ++L     PD
Sbjct: 188 IDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPD 247

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVI 578
           + T  ++LSAC        G++   +     G+          +D+  ++     ++ + 
Sbjct: 248 KFTLTSLLSACVELEFFSLGKQ-LHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIF 306

Query: 579 DSLPFKPSAPIWEALLAG 596
           +++    +   W AL++G
Sbjct: 307 NTM-LHHNVMSWTALISG 323


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 258/718 (35%), Positives = 381/718 (53%), Gaps = 78/718 (10%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + D+   T L+  Y+    +  A+ +F  + +  RD V +NAMI   S       A++L 
Sbjct: 141 ESDVFVCTALVDFYAKCGILVEAQRLF--SSMSHRDVVAWNAMIAGCSLYGLCDDAVQLI 198

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ---MHCTVVKSGTGLFTSVLNALISV 194
             M+ + + P++ T   VL      V E K       +H   V+        V   L+ +
Sbjct: 199 MQMQEEGICPNSSTIVGVLPT----VGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDM 254

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           Y KC    +         AR++FD M  R+E+SW+ M+ GYV +D +  A E  D M   
Sbjct: 255 YAKCQCLLY---------ARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQM--- 302

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDE--FTYTSVISACANSGLFRLGKQVHAYLLRTE 312
                               +L+  +D    T  SV+ ACA       G+++H Y++   
Sbjct: 303 --------------------ILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYII--- 339

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
                               K G V             D++  N +LS Y   G+ID+A 
Sbjct: 340 --------------------KLGXV------------LDILLGNTLLSMYAKCGVIDDAI 367

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
             F+ M  ++ +S++ ++SG  QNG     L +F  M+L G  P      G + +C+ L 
Sbjct: 368 RFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLA 427

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
           AL++G   H  L+  G+ +     NALI MY++CG +  A  VFN M   D VSWNAMI 
Sbjct: 428 ALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMII 487

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552
             G HG G  A+ L+  +L  G+ PD ITF+ +LS+C+H+GLV EGR +F+ M   + I 
Sbjct: 488 GYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIV 547

Query: 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
           P  +H    +D+L RAG   EA   I ++PF+P   IW ALL+ CRIH NI+LG + +++
Sbjct: 548 PRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKK 607

Query: 613 LFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLV 672
           +  L P   G +VLLSN+Y+  GRWDDAA +R   +D G+KK PGCSWIE++  VH F+ 
Sbjct: 608 IQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVG 667

Query: 673 DDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGL 732
            D +H +   + + LE+L++EM++LGY  +  FV  D+E ++KE  L  HSEKLA+AFG+
Sbjct: 668 GDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGI 727

Query: 733 MKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           + L  G  + V KNLR+CGDCH A KFM+ +  REI VRD  RFHHF++G C+CGD+W
Sbjct: 728 LNLKAGRPILVTKNLRVCGDCHAAIKFMTVITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 116/452 (25%), Positives = 195/452 (43%), Gaps = 81/452 (17%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           ++H   +K+ +   +SVL+ L  +Y+ C         + +  ARR+FDE+P    + W  
Sbjct: 29  KIHQHFLKNTSNADSSVLHKLTRLYLSC---------NQVVLARRLFDEIPNPSVILWNQ 79

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++  Y                      AWN    G +     ML L ++ +++TY  V+ 
Sbjct: 80  IIRAY----------------------AWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLK 117

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTP-EFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
           AC+       G ++H++     AK    E  + V  ALV  Y KCG + EA+ +F+ M  
Sbjct: 118 ACSGLLAIEDGVEIHSH-----AKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSH 172

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
           RD+V+WNA+++     GL D+A                               ++L  QM
Sbjct: 173 RDVVAWNAMIAGCSLYGLCDDA-------------------------------VQLIMQM 201

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
           + EG  P      G + +     AL +G+ LH   V   +D+ +  G  L+ MYA+C  +
Sbjct: 202 QEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCL 261

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM-LKEGILPDRITFLTVLSA 528
             A  +F+ M   + VSW+AMI           A+EL++QM LK+ + P  +T  +VL A
Sbjct: 262 LYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRA 321

Query: 529 CNHAGLVKEGRR---YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP 585
           C     +  GR+   Y   +     I  G       + +  + G   +A    D +  K 
Sbjct: 322 CAKLTDLSRGRKLHCYIIKLGXVLDILLGN----TLLSMYAKCGVIDDAIRFFDXMNPKD 377

Query: 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           S   + A+++GC  +GN       A  +F++M
Sbjct: 378 SVS-FSAIVSGCVQNGN----AAVALSIFRMM 404



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 158/369 (42%), Gaps = 50/369 (13%)

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
            Y  ++ AC  S      K++H + L    K T      V + L  LY  C +V  AR +
Sbjct: 10  NYLHLLEACIQSKSLTEAKKIHQHFL----KNTSNADSSVLHKLTRLYLSCNQVVLARRL 65

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
           F+++P   ++                                W  +I   A NG  +  +
Sbjct: 66  FDEIPNPSVIL-------------------------------WNQIIRAYAWNGPFDGAI 94

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
            L+  M   G +P  Y +   + +C+GL A+E+G ++H+     G +S +    AL+  Y
Sbjct: 95  DLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFY 154

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
           A+CG++  A  +F++M + D V+WNAMIA    +G    A++L  QM +EGI P+  T +
Sbjct: 155 AKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIV 214

Query: 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH----YARFIDLLCRAGKFSEAKDVID 579
            VL     A  +  G+     +HG Y +    D+        +D+  +      A+ + D
Sbjct: 215 GVLPTVGEAKALGHGK----ALHG-YCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFD 269

Query: 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA--GTYVLLSNMYANLGRW 637
            +  +     W A++ G   +   D   +A E   Q++   A   T V L ++     + 
Sbjct: 270 VMGVRNEVS-WSAMIGG---YVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKL 325

Query: 638 DDAARVRKL 646
            D +R RKL
Sbjct: 326 TDLSRGRKL 334


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 258/727 (35%), Positives = 391/727 (53%), Gaps = 84/727 (11%)

Query: 85   TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
              L+  Y+    V  A+ +F       +D V +N +I++ S N     A+     M  D 
Sbjct: 472  NALVTMYARLGRVNDAKALFGV--FDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDG 529

Query: 145  VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS-VLNALISVYVKCVSSPF 203
            V+PD  T  SVL A + + E  +   ++HC  +++G  +  S V  AL+ +Y  C     
Sbjct: 530  VRPDGVTLASVLPACSQL-ERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNC----- 583

Query: 204  VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
                           + P++                     R   DG+       WNAL+
Sbjct: 584  ---------------KQPKK--------------------GRLVFDGVVRRTVAVWNALL 608

Query: 264  SGYVHRE-----LKMLMLRIQLDEF-----TYTSVISACANSGLFRLGKQVHAYLLRTEA 313
            +GY   E     L++ +  I   EF     T+ SV+ AC    +F   + +H Y+++   
Sbjct: 609  AGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGF 668

Query: 314  KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
                     V NAL+ +Y + G+V  ++ IF +M +RD+VSWN +++  +  G  D+A +
Sbjct: 669  GKDKY----VQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALN 724

Query: 374  LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG---FKPCDYAFAGAITSCAG 430
            L   M+ R                 GE+G   F     +G   FKP        +  CA 
Sbjct: 725  LLHEMQRRQ----------------GEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAA 768

Query: 431  LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
            L AL  G+++HA  V       ++ G+AL+ MYA+CG +  A+ VF+ MP  + ++WN +
Sbjct: 769  LAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVL 828

Query: 491  IAALGQHGNGARAIELYEQML------KEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
            I A G HG G  A+EL+  M       +E I P+ +T++ + +AC+H+G+V EG   F T
Sbjct: 829  IMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHT 888

Query: 545  MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK-PSAPIWEALLAGCRIHGNI 603
            M   +G+ P  DHYA  +DLL R+G+  EA ++I+++P        W +LL  CRIH ++
Sbjct: 889  MKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSV 948

Query: 604  DLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEV 663
            + G  AA+ LF L P+ A  YVL+SN+Y++ G WD A  VRK M++ GV+KEPGCSWIE 
Sbjct: 949  EFGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEH 1008

Query: 664  DNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHS 723
             ++VH FL  D +HP+++ +++YLE L   MRK GYVPD   VLH+++ ++KE  L  HS
Sbjct: 1009 GDEVHKFLSGDASHPQSKELHEYLETLSQRMRKEGYVPDISCVLHNVDDEEKETMLCGHS 1068

Query: 724  EKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGK 783
            E+LA+AFGL+  P G T+RV KNLR+C DCH A K +SK+V REI++RD +RFHHF +G 
Sbjct: 1069 ERLAIAFGLLNTPPGTTIRVAKNLRVCNDCHVATKIISKIVDREIILRDVRRFHHFANGT 1128

Query: 784  CSCGDYW 790
            CSCGDYW
Sbjct: 1129 CSCGDYW 1135



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 141/503 (28%), Positives = 224/503 (44%), Gaps = 101/503 (20%)

Query: 120 MITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM--QMHCTVV 177
           ++ + +H+S+   AI  +  M      PDNF F +VL A A +      C+  Q+H  V 
Sbjct: 301 LLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAV---HDLCLGKQIHAHVF 357

Query: 178 KSGTGLFTS--VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
           K G    +S  V N+L+++Y KC           + AAR+VFD++P+RD +SW +M+   
Sbjct: 358 KFGHAPPSSVAVANSLVNMYGKCGD---------LTAARQVFDDIPDRDHVSWNSMI--- 405

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDE------FTYTSVI 289
                                    A +  +   EL + + R+ L E      FT  SV 
Sbjct: 406 -------------------------ATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVA 440

Query: 290 SACAN-SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
            AC++  G  RLGKQVHAY LR       +     NNALVT+Y + G+VN+A+ +F    
Sbjct: 441 HACSHVRGGVRLGKQVHAYTLRNG-----DLRTYTNNALVTMYARLGRVNDAKALFGVFD 495

Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQ 408
            +DLVSWN +                               IS L+QN   EE L     
Sbjct: 496 GKDLVSWNTV-------------------------------ISSLSQNDRFEEALMYVYL 524

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG--YDSSLSAGNALITMYARC 466
           M ++G +P     A  + +C+ L  L  GR++H   + +G   ++S   G AL+ MY  C
Sbjct: 525 MIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSF-VGTALVDMYCNC 583

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG-ILPDRITFLTV 525
              +    VF+ +       WNA++A   ++    +A+ L+ +M+ E    P+  TF +V
Sbjct: 584 KQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASV 643

Query: 526 LSACNHAGLVKEGRRYFETMHGPYGIPP--GEDHYAR--FIDLLCRAGKFSEAKDVIDSL 581
           L AC    +  +     E +HG Y +    G+D Y +   +D+  R G+   +K +   +
Sbjct: 644 LPACVRCKVFSDK----EGIHG-YIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRM 698

Query: 582 PFKPSAPIWEALLAGCRIHGNID 604
             K     W  ++ GC + G  D
Sbjct: 699 N-KRDIVSWNTMITGCIVCGRYD 720



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 149/615 (24%), Positives = 247/615 (40%), Gaps = 132/615 (21%)

Query: 33  LARSVHAHMISSGFKPREHII--NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
           L + +HAH+   G  P   +   N L+++Y K   L  AR +FD+I  PD          
Sbjct: 348 LGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDI--PD---------- 395

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
                                RD V +N+MI           ++ LFR M  ++V P +F
Sbjct: 396 ---------------------RDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSF 434

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           T  SV  A + +    +   Q+H   +++G  L T   NAL+++Y +        +++L 
Sbjct: 435 TLVSVAHACSHVRGGVRLGKQVHAYTLRNGD-LRTYTNNALVTMYARL--GRVNDAKALF 491

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
           G    VFD    +D +SW T+++   +ND  +                  AL+  Y+   
Sbjct: 492 G----VFD---GKDLVSWNTVISSLSQNDRFE-----------------EALMYVYL--- 524

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
             M++  ++ D  T  SV+ AC+     R+G+++H Y LR        F   V  ALV +
Sbjct: 525 --MIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSF---VGTALVDM 579

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y  C +  + R +F+ +  R +  WNA+L+ Y                            
Sbjct: 580 YCNCKQPKKGRLVFDGVVRRTVAVWNALLAGY---------------------------- 611

Query: 391 SGLAQNGYGEEGLKLFSQMRLEG-FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
              A+N + ++ L+LF +M  E  F P    FA  + +C       +   +H  +V  G+
Sbjct: 612 ---ARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGF 668

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
                  NAL+ MY+R G VE +  +F  M   D VSWN MI      G    A+ L  +
Sbjct: 669 GKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHE 728

Query: 510 MLKEG------------------ILPDRITFLTVLSACNHAGLVKEGRR---YFETMHGP 548
           M +                      P+ +T +TVL  C     + +G+    Y       
Sbjct: 729 MQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLA 788

Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
             +  G    +  +D+  + G  + A  V D +P + +   W  L+    +HG    G +
Sbjct: 789 MDVAVG----SALVDMYAKCGCLNLASRVFDQMPIR-NVITWNVLIMAYGMHGK---GEE 840

Query: 609 AAEQLFQLMPHHAGT 623
           A E LF++M    G+
Sbjct: 841 ALE-LFRIMTAGGGS 854



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 101/419 (24%), Positives = 179/419 (42%), Gaps = 73/419 (17%)

Query: 13  ANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTL 72
           A  +AS L  C  R  + S     +H +++  GF   +++ N L+D+Y +  ++  ++T+
Sbjct: 637 ATTFASVLPAC-VRCKVFSD-KEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTI 694

Query: 73  FDEIPQPDIVARTTLIAAYSA----SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           F  + + DIV+  T+I          D + L  EM                         
Sbjct: 695 FGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEM----------------------QRR 732

Query: 129 NGHAAIELFRDMRRDD---VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFT 185
            G    + F D   D     KP++ T  +VL   A +    K   ++H   VK    +  
Sbjct: 733 QGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKG-KEIHAYAVKQKLAMDV 791

Query: 186 SVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245
           +V +AL+ +Y KC           +  A RVFD+MP R+ ++W  ++  Y  +   + A 
Sbjct: 792 AVGSALVDMYAKC---------GCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEAL 842

Query: 246 EFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV- 304
           E    M+            G  +RE+      I+ +E TY ++ +AC++SG+   G  + 
Sbjct: 843 ELFRIMTA----------GGGSNREV------IRPNEVTYIAIFAACSHSGMVDEGLHLF 886

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--RDLVSWNAILSA- 361
           H        +P  +        LV L  + G+V EA ++ N MP     + +W+++L A 
Sbjct: 887 HTMKASHGVEPRGDHYA----CLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGAC 942

Query: 362 ----YVSAGLIDEAKSLFEAMRERNLLSWTVMISGL-AQNGYGEEGLKLFSQMRLEGFK 415
                V  G I  AK LF  + E N+ S  V++S + +  G  ++ L +  +M+  G +
Sbjct: 943 RIHQSVEFGEI-AAKHLF--VLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVR 998


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 258/734 (35%), Positives = 399/734 (54%), Gaps = 84/734 (11%)

Query: 64  LKLVYARTL-----FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYN 118
           LK ++A+ L     FD      IVA  +L      S +++ AR +F++ P     T   N
Sbjct: 4   LKQIHAQMLRTGLFFDPFTASKIVAFCSL----QESGSLQYARLVFSQIPNPTSYTC--N 57

Query: 119 AMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVK 178
           ++I   +  +    A+  +++M    + PD +TF S+  +         +  Q+HC   K
Sbjct: 58  SIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKS----CRNSSEGKQIHCHSTK 113

Query: 179 SGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKN 238
            G    T   N L+++Y  C           + +AR+VFD+M ++  +SW TM+  + + 
Sbjct: 114 LGFASDTYAQNTLMNMYSNC---------GCLVSARKVFDKMEDKTVVSWATMIGVHAQW 164

Query: 239 DYLDAAREFLDGM--SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSG 296
           D  + A    D M  SENV                       + +E T  +V++ACA + 
Sbjct: 165 DQPNEAVRLFDRMMKSENV-----------------------KPNEVTLVNVLTACARAR 201

Query: 297 LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWN 356
              + K++H Y+     +      + +N  L+ +Y KCG                     
Sbjct: 202 DLAMVKRIHEYI----DEHGFGRHVVLNTVLMDVYCKCG--------------------- 236

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
                      +  A+ LF+  +E+NL SW +MI+G  ++   EE L LF +M+ +G K 
Sbjct: 237 ----------CVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKG 286

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
                A  + +C  LGALE G+ LHA +     D  ++ G AL+ MYA+CG +E A  VF
Sbjct: 287 DKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVF 346

Query: 477 NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536
           + MP  D ++W A+I  L   G    A++ +++M  +G+ PD ITF+ VL+AC+HAG V 
Sbjct: 347 HEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVD 406

Query: 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           EG  +F +M   YGI P  +HY   +D+L RAG+ +EA+++I S+P  P   +   LL  
Sbjct: 407 EGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGA 466

Query: 597 CRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEP 656
           CRIHGN++   +AA+QL ++ P+H+GTYVLLSN+Y +  +W++A R R+LM +RG++K P
Sbjct: 467 CRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPP 526

Query: 657 GCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKE 716
           GCS IEV   VH F+  D++H ++  + + LE ++ +++  GYVPD   VL DM  ++KE
Sbjct: 527 GCSQIEVHGVVHEFVKGDSSHRQSSEINEMLEDMISKLKNAGYVPDKSEVLFDMAEEEKE 586

Query: 717 YALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRF 776
             LS HSEKLA+AFGL+    G  +RV+KNLRIC DCH+A K +SK+  REI+VRD  RF
Sbjct: 587 TELSLHSEKLAIAFGLLSTSVGTPIRVVKNLRICSDCHSATKLISKLYNREIIVRDRNRF 646

Query: 777 HHFRDGKCSCGDYW 790
           HHF+DG CSC  +W
Sbjct: 647 HHFKDGTCSCRGFW 660



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 113/485 (23%), Positives = 199/485 (41%), Gaps = 103/485 (21%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
           SS  + +H H    GF    +  N L+++Y     LV AR +FD++    +V+  T+I  
Sbjct: 101 SSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGV 160

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
           ++  D    A  +F+                                R M+ ++VKP+  
Sbjct: 161 HAQWDQPNEAVRLFD--------------------------------RMMKSENVKPNEV 188

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           T  +VL+A A    +     ++H  + + G G    +   L+ VY KC           +
Sbjct: 189 TLVNVLTACAR-ARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKC---------GCV 238

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKN-DYLDAAREFLDGMSENVGVAWNALISGYVHR 269
             AR +FD+  E++  SW  M+ G+V++ +Y +A   F +  ++                
Sbjct: 239 QLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKG--------------- 283

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
                   I+ D+ T  S++ AC + G   LGK +HAY+     K   +  + +  ALV 
Sbjct: 284 --------IKGDKVTMASLLLACTHLGALELGKWLHAYI----KKQRIDVDVALGTALVD 331

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           +Y KCG +  A  +F++MPE+D+++W                               T +
Sbjct: 332 MYAKCGSIETAIQVFHEMPEKDVMTW-------------------------------TAL 360

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG-RQLHAQLVHSG 448
           I GLA  G  E  L+ F +M ++G KP    F G + +C+  G ++ G    ++     G
Sbjct: 361 ILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYG 420

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNV-DSVSWNAMIAALGQHGNGARAIELY 507
              ++     L+ +  R G +  A  +  +MP   D      ++ A   HGN   A    
Sbjct: 421 IQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAA 480

Query: 508 EQMLK 512
           +Q+L+
Sbjct: 481 KQLLE 485


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 249/649 (38%), Positives = 370/649 (57%), Gaps = 71/649 (10%)

Query: 145 VKPDNFTFTSVLSALALIVE--EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSP 202
           V P  F   +  +AL   ++  E  +   +HC ++K G  L     N L+++YVK   S 
Sbjct: 31  VSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVK---SD 87

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKN-DYLDAAREFLDGMSENVGVAWNA 261
           F+        A ++FDEMPER+ +S+ T++ GY ++  +L+A   F+             
Sbjct: 88  FLCD------ASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFV------------- 128

Query: 262 LISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
                +HRE       +  ++FT+ SV+ ACA      LG Q+H +++            
Sbjct: 129 ----RLHRE-------VLPNQFTFASVLQACATMEGLNLGNQIHCHVI------------ 165

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
                         K+    D+F        VS NA++  Y   G ++ +  LF     R
Sbjct: 166 --------------KIGLHSDVF--------VS-NALMDVYAKCGRMENSMELFAESPHR 202

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
           N ++W  +I G  Q G GE+ L+LF  M     +  +  ++ A+ +CA L ALE G Q+H
Sbjct: 203 NDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIH 262

Query: 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGA 501
           +  V + +D  +   NALI MYA+CG ++ A  VF+ M   D VSWNAMI+    HG G 
Sbjct: 263 SLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGR 322

Query: 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF 561
            A+ ++++M +  + PD++TF+ VLSAC +AGL+ +G+ YF +M   +GI P  +HY   
Sbjct: 323 EALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCM 382

Query: 562 IDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621
           + LL R G   +A  +ID +PF+PS  +W ALL  C IH +I+LG  +A+++ ++ P   
Sbjct: 383 VWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDK 442

Query: 622 GTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQ 681
            T+VLLSNMYA   RWD+ A VRK M+ +GVKKEPG SWIE    VH F V DT+HPE +
Sbjct: 443 ATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVR 502

Query: 682 AVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATV 741
            +   LE L ++ +K GY+P+   VL D+E ++KE  L  HSE+LA++FG+++ P G+ +
Sbjct: 503 VINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPI 562

Query: 742 RVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           R++KNLRIC DCH A K +SKVV REIVVRD  RFHHF++G CSCGDYW
Sbjct: 563 RIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 611



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/423 (28%), Positives = 196/423 (46%), Gaps = 74/423 (17%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+ A   L+  Y  SD +  A ++F++ P   R+T+ +  +I  Y+ +     AIELF  
Sbjct: 72  DLFAWNILLNMYVKSDFLCDASKLFDEMP--ERNTISFVTLIQGYAESVRFLEAIELFVR 129

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           + R+ V P+ FTF SVL A A  +E      Q+HC V+K G      V NAL+ VY KC 
Sbjct: 130 LHRE-VLPNQFTFASVLQACA-TMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKC- 186

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK-NDYLDAAREFLDGMSENVGVA 258
                     M  +  +F E P R++++W T++ G+V+  D   A R FL+         
Sbjct: 187 --------GRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLN--------- 229

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                         ML  R+Q  E TY+S + ACA+      G Q+H+  ++T    T +
Sbjct: 230 --------------MLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKT----TFD 271

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
             + V NAL+ +Y KCG + +AR +F+ M ++D VSWNA++S Y   GL           
Sbjct: 272 KDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGL----------- 320

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
                               G E L++F +M+    KP    F G +++CA  G L+ G+
Sbjct: 321 --------------------GREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQ 360

Query: 439 QLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV-SWNAMIAALGQ 496
                ++   G +  +     ++ +  R G ++ A  + + +P   SV  W A++ A   
Sbjct: 361 AYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVI 420

Query: 497 HGN 499
           H +
Sbjct: 421 HND 423



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 143/349 (40%), Gaps = 71/349 (20%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           +AS LQ C     +  +L   +H H+I  G      + N L+D+Y K  ++  +  LF E
Sbjct: 141 FASVLQACATMEGL--NLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAE 198

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
            P                                  R+ V +N +I  +    +G  A+ 
Sbjct: 199 SPH---------------------------------RNDVTWNTVIVGHVQLGDGEKALR 225

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LF +M    V+    T++S L A A +   E   +Q+H   VK+       V NALI +Y
Sbjct: 226 LFLNMLEYRVQATEVTYSSALRACASLAALEPG-LQIHSLTVKTTFDKDIVVTNALIDMY 284

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            KC S         +  AR VFD M ++DE+SW  M++GY  +     A    D M E  
Sbjct: 285 AKCGS---------IKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQET- 334

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                                 ++ D+ T+  V+SACAN+GL   G+   AY        
Sbjct: 335 ---------------------EVKPDKLTFVGVLSACANAGLLDQGQ---AYFTSMIQDH 370

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYV 363
             E  +     +V L  + G +++A  + +++P +  ++ W A+L A V
Sbjct: 371 GIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACV 419


>gi|302820671|ref|XP_002992002.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
 gi|300140244|gb|EFJ06970.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
          Length = 620

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 245/662 (37%), Positives = 368/662 (55%), Gaps = 53/662 (8%)

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M+ +  +PD   F   L A A   E +    Q+H +VV SG      + N+L+++Y KC 
Sbjct: 1   MQWEGTRPDKVVFVIALDACAASGELDHG-RQIHSSVVDSGLTSNIIISNSLVNMYGKCQ 59

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
             P          A +VFD M  RD +SWT M+  Y +N     A    + M     V+W
Sbjct: 60  DVP---------CAEKVFDGMLLRDVVSWTAMLAVYAQNGCWSQALHVFEAMPRKDDVSW 110

Query: 260 NALISGYVHR-------EL--KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
           NA+I+  V         EL   M +  ++ +EFT  S++ AC      +L +Q+HA    
Sbjct: 111 NAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAA 170

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
                    S  V N++V +Y +CG + + +  F+ + E+ LV+W+ +L+AY        
Sbjct: 171 GGFGGN---STAVGNSVVNMYARCGSLLDTKKAFDSLEEKGLVAWSIMLAAYAQ------ 221

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
                                  +++G G    K F +M  EG KP +  F  A+ +CA 
Sbjct: 222 -----------------------SKDGSGRRAFKFFQEMEAEGIKPGEVTFVSALDACAA 258

Query: 431 LGALENGRQLHAQLVHSGY-DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
           +  LE+GR +H +   SG+ ++SL  GN +I MY +CG    A  VF+ MP    +SWN+
Sbjct: 259 MATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEKCLISWNS 318

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY 549
           +I A   +G+   A+   ++ML +G  PD  T +++L   +HAGL++ G  +F +    +
Sbjct: 319 LIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGLSHAGLLERGVEHFRSSIQDH 378

Query: 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI-WEALLAGCRIHGNIDLGIQ 608
           G+ P        +DLL R G    A+++I + P   +  I W  LLA C+ +G+   GI+
Sbjct: 379 GLEPSSGQLKCLVDLLARKGFLDAAEELILASPACQADTIAWMTLLAACKSYGDPQRGIR 438

Query: 609 AAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVH 668
            AE++F+L P H+G++V+L+N+YA++GRW DA+R+RK+M    VKKEPGCSWIE+   VH
Sbjct: 439 CAERVFELEPQHSGSFVVLANLYASVGRWSDASRIRKMMERMSVKKEPGCSWIELSGSVH 498

Query: 669 VFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAV 728
            F+  ++ HP+ + + + LE+L L MR+ GYVPDT  V+HD+E   KE  LS HSE+LA+
Sbjct: 499 EFISGESKHPKIREICEELEKLTLRMREAGYVPDTTNVVHDVEEGDKEEILSRHSERLAI 558

Query: 729 AFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788
            FGLM    G T+RV+KNLR+C DCH A K +S VVGREIVVRD  RFHHF+ G+CSCGD
Sbjct: 559 VFGLMSTRPGETIRVVKNLRVCSDCHAATKIISSVVGREIVVRDSSRFHHFKHGQCSCGD 618

Query: 789 YW 790
           +W
Sbjct: 619 FW 620



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 122/483 (25%), Positives = 213/483 (44%), Gaps = 70/483 (14%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R +H+ ++ SG      I N L+++Y K   +  A  +FD +   D+V+ T ++A Y+ 
Sbjct: 29  GRQIHSSVVDSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWTAMLAVYAQ 88

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
           +     A  +F   P K  D V +NA+I A   NS    A+ELF  M  + ++ + FT  
Sbjct: 89  NGCWSQALHVFEAMPRK--DDVSWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLL 146

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGL-FTSVLNALISVYVKCVSSPFVSSRSLMGA 212
           S+L A   + E+ K   Q+H      G G   T+V N+++++Y +C S         +  
Sbjct: 147 SLLEACGGL-EDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGS---------LLD 196

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
            ++ FD + E+  ++W+ M+  Y ++      R F                     +E++
Sbjct: 197 TKKAFDSLEEKGLVAWSIMLAAYAQSKDGSGRRAF------------------KFFQEME 238

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                I+  E T+ S + ACA       G+ +H    R  A    E SL + N ++ +Y 
Sbjct: 239 --AEGIKPGEVTFVSALDACAAMATLEHGRSMHR---RAAASGFVETSLVLGNTIINMYG 293

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           KCG  ++A+ +F+QMPE+ L+SWN+++ AY                              
Sbjct: 294 KCGSPSDAKLVFDQMPEKCLISWNSLIVAY------------------------------ 323

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG-RQLHAQLVHSGYDS 451
            A NG+  E L    +M L+GF P        +   +  G LE G     + +   G + 
Sbjct: 324 -AHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGLSHAGLLERGVEHFRSSIQDHGLEP 382

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMP--NVDSVSWNAMIAALGQHGNGARAIELYEQ 509
           S      L+ + AR G ++AA  +    P    D+++W  ++AA   +G+  R I   E+
Sbjct: 383 SSGQLKCLVDLLARKGFLDAAEELILASPACQADTIAWMTLLAACKSYGDPQRGIRCAER 442

Query: 510 MLK 512
           + +
Sbjct: 443 VFE 445


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 267/768 (34%), Positives = 404/768 (52%), Gaps = 101/768 (13%)

Query: 41  MISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQP-----DIVARTTLIAAYSASD 95
           +I  G +P  + +  +I   C+ LK +    L   I        D      L+  Y    
Sbjct: 21  LIRCGARPDNYTLPFVIRA-CRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCR 79

Query: 96  NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV 155
            ++ AR +F+K  ++ RD V +  MI  Y+     + ++ LF  MR + V PD     +V
Sbjct: 80  EIEDARFLFDK--MQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTV 137

Query: 156 LSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARR 215
           + A A +    K                       +I  Y++                R+
Sbjct: 138 VFACAKLGAMHKA---------------------RIIDDYIQ----------------RK 160

Query: 216 VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR------ 269
            F    + D +  T M+  Y K   +++ARE  D M E   ++W+A+I+ Y +       
Sbjct: 161 KF----QLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKA 216

Query: 270 -ELKMLMLRIQL--DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN- 325
            +L  +ML   +  D+ T  S++ AC++    ++G+ +H  + +        F L +++ 
Sbjct: 217 LDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYK--------FGLDLDHF 268

Query: 326 ---ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
              ALV +Y KC ++ +AR                                LF+ M ER+
Sbjct: 269 VCAALVDMYGKCREIEDAR-------------------------------FLFDKMPERD 297

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
           L++WTVMI G A+ G   E L LF +MR EG  P   A    + +CA LGA+   R +  
Sbjct: 298 LVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDD 357

Query: 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
            +    +   +  G A+I M+A+CG VE+A  +F+ M   + +SW+AMIAA G HG G +
Sbjct: 358 YIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRK 417

Query: 503 AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562
           A++L+  ML+ GILP++IT +++L AC+HAGLV+EG R+F  M   Y +     HY   +
Sbjct: 418 ALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVV 477

Query: 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622
           DLL RAG+  EA  +I+S+  +    +W A L  CR H ++ L  +AA  L +L P + G
Sbjct: 478 DLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPG 537

Query: 623 TYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQA 682
            Y+LLSN+YAN GRW+D A+ R LM  R +KK PG +WIEVDNK H F V DT HP ++ 
Sbjct: 538 HYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKE 597

Query: 683 VYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVR 742
           +Y+ L+ L  ++  +GYVPDT FVLHD++ + K   L +HSEKLA+AFGL+  P    +R
Sbjct: 598 IYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIR 657

Query: 743 VLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           ++KNLR+CGDCH   K +S + GR I+VRD  RFHHF++G CSCGDYW
Sbjct: 658 IIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 705



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 123/473 (26%), Positives = 207/473 (43%), Gaps = 83/473 (17%)

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQM----HCTVVKSGTGLFTSVLNALI 192
           FR++ R   +PDN+T   V+ A       + + +QM    H  V K G  L   V  AL+
Sbjct: 18  FRELIRCGARPDNYTLPFVIRAC-----RDLKNLQMGRLIHHIVYKFGLDLDHFVCAALV 72

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
            +YVKC           +  AR +FD+M ERD ++WT M+ GY +    + +    + M 
Sbjct: 73  DMYVKCRE---------IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMR 123

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
           E   V                       D+    +V+ ACA  G     + +  Y+ R +
Sbjct: 124 EEGVVP----------------------DKVAMVTVVFACAKLGAMHKARIIDDYIQRKK 161

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
                +  + +  A++ +Y KCG V  AR+IF++M E++++SW+A+++AY          
Sbjct: 162 F----QLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAY---------- 207

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
                                  +G G + L LF  M   G  P     A  + +C+ L 
Sbjct: 208 ---------------------GYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLK 246

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
            L+ GR +H  +   G D       AL+ MY +C  +E A  +F+ MP  D V+W  MI 
Sbjct: 247 NLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIG 306

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR---YFETMHGPY 549
              + GN   ++ L+++M +EG++PD++  +TV+ AC   G + + R    Y +      
Sbjct: 307 GYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQL 366

Query: 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
            +  G       ID+  + G    A+++ D +  K +   W A++A    HG 
Sbjct: 367 DVILG----TAMIDMHAKCGCVESAREIFDRMEEK-NVISWSAMIAAYGYHGQ 414



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 12/232 (5%)

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG 448
           M+ G A+ G        F ++   G +P +Y     I +C  L  L+ GR +H  +   G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
            D       AL+ MY +C  +E A  +F+ M   D V+W  MI    + G    ++ L+E
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGR---RYFETMHGPYGIPPGEDHYARFIDLL 565
           +M +EG++PD++  +TV+ AC   G + + R    Y +       +  G       ID+ 
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILG----TAMIDMY 176

Query: 566 CRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
            + G    A+++ D +  K +   W A++A    HG      + A  LF++M
Sbjct: 177 AKCGCVESAREIFDRMEEK-NVISWSAMIAAYGYHGQ----GRKALDLFRMM 223



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 94/411 (22%), Positives = 164/411 (39%), Gaps = 93/411 (22%)

Query: 17  ASQLQLC-DPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           AS L  C D +N     + R +H  +   G      +   L+D+Y K  ++  AR LFD+
Sbjct: 236 ASLLYACSDLKNL---QMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDK 292

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P+ D+V  T +I  Y+                                    N + ++ 
Sbjct: 293 MPERDLVTWTVMIGGYAEC---------------------------------GNANESLV 319

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LF  MR + V PD     +V+ A A +    K    +   + +    L   +  A+I ++
Sbjct: 320 LFDKMREEGVVPDKVAMVTVVFACAKLGAMHKA-RTIDDYIQRKKFQLDVILGTAMIDMH 378

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            KC           + +AR +FD M E++ +SW+ M+  Y    Y    R+ LD      
Sbjct: 379 AKC---------GCVESAREIFDRMEEKNVISWSAMIAAY---GYHGQGRKALD------ 420

Query: 256 GVAWNALISGYVHRELKMLMLR--IQLDEFTYTSVISACANSGLFRLGKQVHA-----YL 308
                          L  +MLR  I  ++ T  S++ AC+++GL   G +  +     Y 
Sbjct: 421 ---------------LFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYS 465

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA---YVS 364
           +R + K            +V L  + G+++EA  +   M  E+D   W A L A   +  
Sbjct: 466 VRADVKHY--------TCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKD 517

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK---LFSQMRLE 412
             L ++A +    ++ +N   + ++ +  A  G  E+  K   L SQ RL+
Sbjct: 518 VVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLK 568


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 268/828 (32%), Positives = 429/828 (51%), Gaps = 141/828 (17%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           +A+S+H  ++  GF    +I N LID+YC+          F+++ +              
Sbjct: 192 MAKSIHDRVLXMGFGSDLYIGNALIDMYCR----------FNDLDK-------------- 227

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                  AR++F + PL  RD V +N++I+ Y+ N   + A+E++   R   V PD++T 
Sbjct: 228 -------ARKVFEEMPL--RDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTM 278

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
           +SVL A   +   E+  + +H  + K G      V N L+S+Y  C  +  +        
Sbjct: 279 SSVLRACGGLGSVEEGDI-IHGLIEKIGIKKDVIVNNGLLSMY--CKFNGLID------- 328

Query: 213 ARRVFDEMPERDELSWTTMMTGYVK-NDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            RR+FD+M  RD +SW TM+ GY +   Y ++ + F++ +++                  
Sbjct: 329 GRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ------------------ 370

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                  + D  T TS++ AC + G    GK VH Y++ +      E     +N L+ +Y
Sbjct: 371 ------FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGY----ECDTTASNILINMY 420

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR---ERNLLSWTV 388
            KCG +  ++++F+ M  +D VSWN++++ Y+  G  DEA  LF+ M+   + + +++ +
Sbjct: 421 AKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVM 480

Query: 389 MIS----------------GLAQNGY-----------------GEEG--LKLFSQM---- 409
           ++S                 LA+ G+                 GE G  LK+F  M    
Sbjct: 481 LLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARD 540

Query: 410 ---------------------------RLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
                                      R EG  P        +  C+ L A   G+++H 
Sbjct: 541 IITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHG 600

Query: 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
            +   G +S +  GN LI MY++CG +  +  VF  M   D V+W A+I+A G +G G +
Sbjct: 601 CIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKK 660

Query: 503 AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562
           A+  + +M   GI+PD + F+ ++ AC+H+GLV+EG  YF  M   Y I P  +HYA  +
Sbjct: 661 AVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVV 720

Query: 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622
           DLL R+    +A+D I S+P KP + IW ALL+ CR+ G+ ++  + +E++ +L P   G
Sbjct: 721 DLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTG 780

Query: 623 TYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQA 682
            YVL+SN+YA LG+WD    +RK ++ RG+KK+PGCSW+E+ NKV+VF        + + 
Sbjct: 781 YYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEE 840

Query: 683 VYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVR 742
           V K L  L   M K GY+ + +FVLHD++ D+K   L  HSE+LA+AFGL+    G  ++
Sbjct: 841 VNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQ 900

Query: 743 VLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           V+KNLR+C DCH   K++SK+  RE++VRD  RFH F+DG CSCGDYW
Sbjct: 901 VMKNLRVCEDCHTVTKYISKIXQRELLVRDANRFHVFKDGACSCGDYW 948



 Score =  192 bits (488), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 137/497 (27%), Positives = 235/497 (47%), Gaps = 71/497 (14%)

Query: 117 YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTV 176
           +N++I A +HN     A+ L+ + +R  ++PD +TF SV++A A +++ E     +H  V
Sbjct: 142 WNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFE-MAKSIHDRV 200

Query: 177 VKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV 236
           +  G G    + NALI +Y +          + +  AR+VF+EMP RD +SW ++++GY 
Sbjct: 201 LXMGFGSDLYIGNALIDMYCR---------FNDLDKARKVFEEMPLRDVVSWNSLISGYN 251

Query: 237 KNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSG 296
            N Y + A E                   Y  R L ++      D +T +SV+ AC   G
Sbjct: 252 ANGYWNEALEIY-----------------YRFRNLGVVP-----DSYTMSSVLRACGGLG 289

Query: 297 LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWN 356
               G  +H  + +   K      + VNN L+++Y K   + + R IF++M  RD VSWN
Sbjct: 290 SVEEGDIIHGLIEKIGIKK----DVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWN 345

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
            ++  Y   GL                                EE +KLF +M +  FKP
Sbjct: 346 TMICGYSQVGLY-------------------------------EESIKLFMEM-VNQFKP 373

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
                   + +C  LG LE G+ +H  ++ SGY+   +A N LI MYA+CG + A+  VF
Sbjct: 374 DLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVF 433

Query: 477 NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536
           + M   DSVSWN+MI    Q+G+   A++L+ +M+K  + PD +T++ +LS     G + 
Sbjct: 434 SGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLX 492

Query: 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
            G+     +    G           +D+  + G+  ++  V +++  +     W  ++A 
Sbjct: 493 LGKELHCDL-AKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIAS 550

Query: 597 CRIHGNIDLGIQAAEQL 613
           C    + +LG++   ++
Sbjct: 551 CVHSEDCNLGLRMISRM 567



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 174/390 (44%), Gaps = 55/390 (14%)

Query: 259 WNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
           WN++I    H  L         +   +R+Q D +T+ SVI+ACA    F + K +H  +L
Sbjct: 142 WNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVL 201

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLID 369
                      L + NAL+ +Y +          FN +                     D
Sbjct: 202 XMGFGS----DLYIGNALIDMYCR----------FNDL---------------------D 226

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
           +A+ +FE M  R+++SW  +ISG   NGY  E L+++ + R  G  P  Y  +  + +C 
Sbjct: 227 KARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACG 286

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
           GLG++E G  +H  +   G    +   N L++MY +   +     +F+ M   D+VSWN 
Sbjct: 287 GLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNT 346

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY 549
           MI    Q G    +I+L+ +M+ +   PD +T  ++L AC H G ++ G+   + M    
Sbjct: 347 MICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITS- 404

Query: 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609
           G           I++  + G    +++V   +  K S   W +++     +G+ D     
Sbjct: 405 GYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVS-WNSMINVYIQNGSFD----E 459

Query: 610 AEQLFQLMPHHAG----TYVLLSNMYANLG 635
           A +LF++M         TYV+L +M   LG
Sbjct: 460 AMKLFKMMKTDVKPDSVTYVMLLSMSTQLG 489



 Score =  115 bits (289), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 8/218 (3%)

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
           N+  W  +I  L  NG   E L L+S+ +    +P  Y F   I +CAGL   E  + +H
Sbjct: 138 NVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIH 197

Query: 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGA 501
            +++  G+ S L  GNALI MY R   ++ A  VF  MP  D VSWN++I+    +G   
Sbjct: 198 DRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWN 257

Query: 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG---PYGIPPGEDHY 558
            A+E+Y +    G++PD  T  +VL AC   G V+EG    + +HG     GI       
Sbjct: 258 EALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG----DIIHGLIEKIGIKKDVIVN 313

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
              + + C+     + + + D +  + +   W  ++ G
Sbjct: 314 NGLLSMYCKFNGLIDGRRIFDKMVLRDAVS-WNTMICG 350


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/585 (40%), Positives = 338/585 (57%), Gaps = 44/585 (7%)

Query: 215  RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV------- 267
            ++F    + D    T     YV  + +DAA    + +       WN +I G+        
Sbjct: 742  KIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLS 801

Query: 268  HREL--KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
              EL  KM+   ++ D+F +   + +CA     + GK +H +L+           L V+ 
Sbjct: 802  SLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSN----DLFVDA 857

Query: 326  ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
            ALV +Y KCG +  AR +F++M  RDLVSW +++S Y                       
Sbjct: 858  ALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGY----------------------- 894

Query: 386  WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
                    A NGY  E L  F  MR  G  P   +    + +C  LGAL  G   H+ ++
Sbjct: 895  --------AHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVI 946

Query: 446  HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIE 505
             +G++  +    A++ MY++CG ++ A C+F+     D V W+AMIA+ G HG+G +AI+
Sbjct: 947  QTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAID 1006

Query: 506  LYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLL 565
            L++QM+K G+ P  +TF  VLSAC+H+GL++EG+ YF+ M   + I     +YA  +DLL
Sbjct: 1007 LFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLL 1066

Query: 566  CRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYV 625
             RAG+ SEA D+I+++P +P A IW +LL  CRIH N+DL  + A+ LF L P HAG +V
Sbjct: 1067 GRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHV 1126

Query: 626  LLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYK 685
            LLSN+YA   RW++  +VRK+M  RG  K  G S +E DN+VH F V D +HP+ + +Y 
Sbjct: 1127 LLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYA 1186

Query: 686  YLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLK 745
             LE+L   M+ LGYVP T FVLHD+E + KE ALS HSE+LA+AFGL+    G T+R+ K
Sbjct: 1187 KLEELAAPMKHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITK 1246

Query: 746  NLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            NLRICGDCHNA K +SK+V R I+VRD  RFH F DG CSCGDYW
Sbjct: 1247 NLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDYW 1291



 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 216/639 (33%), Positives = 335/639 (52%), Gaps = 74/639 (11%)

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
           DEI   D+   + L+  YS    +  A ++F +   +  DTV + +M+T Y  N++   A
Sbjct: 133 DEIGS-DMFVGSALVELYSKCGQMGEALKVFEE--FQRPDTVLWTSMVTGYQQNNDPEEA 189

Query: 134 IELFRDM-RRDDVKPDNFTFTSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
           + LF  M   D V  D  T  SV+SA A L+  +   C+  H  V++        ++N+L
Sbjct: 190 LALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCV--HGLVIRREFDGDLPLVNSL 247

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           +++Y K               A  +F +MPE+D +SW+TM+  Y  N+   AA E L+  
Sbjct: 248 LNLYAKTGCEKI---------AANLFSKMPEKDVISWSTMIACYANNE---AANEALNLF 295

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
            E                   M+  R + +  T  S + ACA S     GK++H    + 
Sbjct: 296 HE-------------------MIEKRFEPNSVTVVSALQACAVSRNLEEGKKIH----KI 332

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
                 E    V+ AL+ +Y KC   +EA D+F ++P++D+VSW A+LS Y         
Sbjct: 333 AVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGY--------- 383

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
                                 AQNG   + + +F  M  +G +P   A    + + + L
Sbjct: 384 ----------------------AQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSEL 421

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
           G  +    LH  +V SG++S++  G +LI +Y++CG +  A  +F  M   D V W++MI
Sbjct: 422 GIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMI 481

Query: 492 AALGQHGNGARAIELYEQMLKEG-ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
           AA G HG G  A+E+++QM+K   + P+ +TFL++LSAC+HAGLV+EG + F+ M   Y 
Sbjct: 482 AAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQ 541

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
           + P  +H+   +DLL R G+  +A D+I+ +P      +W ALL  CRIH NI++G  AA
Sbjct: 542 LRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAA 601

Query: 611 EQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVF 670
           + LF L P HAG Y+LLSN+YA  G+WD+ A +R  +++RG+KK  G S +EV   VH F
Sbjct: 602 KNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSF 661

Query: 671 LVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHD 709
           L  D  HP++Q +Y+ L +L  +M K  Y+PD  F+LHD
Sbjct: 662 LASDRFHPDSQKIYELLRKLEAQMGKEVYIPDLDFLLHD 700



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 160/636 (25%), Positives = 272/636 (42%), Gaps = 75/636 (11%)

Query: 34   ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            A  +H +++ SGF     +   LI++Y K   L  A  LF  +   D+V  +++IAAY  
Sbjct: 427  ALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGI 486

Query: 94   SDNVKLAREMFN---KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPDN 149
                  A E+F+   K      + V + ++++A SH       +++F  M  D  ++PD+
Sbjct: 487  HGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDS 546

Query: 150  FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
              F  ++  L  I +  K    ++   + +G  ++ ++L A             +     
Sbjct: 547  EHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGAC-----------RIHHNIE 595

Query: 210  MG--AARRVFDEMPERDELSWTTMMTGY---VKNDYLDAAREFLDGMSENVGVAWNALIS 264
            MG  AA+ +F   P            GY   + N Y       +DG  +NV      L +
Sbjct: 596  MGEAAAKNLFWLDPSH---------AGYYILLSNIYA------VDGKWDNVA----ELRT 636

Query: 265  GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV- 323
                R LK +  +  ++      V S  A+       ++++  L + EA+   E  +P  
Sbjct: 637  RIKERGLKKMFGQSMVE--VRGGVHSFLASDRFHPDSQKIYELLRKLEAQMGKEVYIPDL 694

Query: 324  -----NNALVTLYWKCGKVNEAR-DIFNQMPERDLVSWNAILSA---------------- 361
                 +   V  +W+  K  E++       P  D +S  + L                  
Sbjct: 695  DFLLHDTGAVLQFWQRIKATESKYKTIGSAPGTDTISCFSCLKKTHAKIFAYGLQYDSRI 754

Query: 362  -------YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF 414
                   YVS   ID A  +FE +       W VMI G A +G     L+L+S+M  +G 
Sbjct: 755  LTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGL 814

Query: 415  KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
            KP  +AF  A+ SCAGL  L+ G+ +H  LV  G  + L    AL+ MYA+CG +EAA  
Sbjct: 815  KPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARL 874

Query: 475  VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
            VF+ M   D VSW +MI+    +G  +  +  ++ M   G++P+R++ L+VL AC + G 
Sbjct: 875  VFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGA 934

Query: 535  VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
            +++G  +F +     G           +D+  + G    A+ + D    K     W A++
Sbjct: 935  LRKG-EWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGK-DLVCWSAMI 992

Query: 595  AGCRIHGNIDLGIQAAEQLFQ--LMPHHAGTYVLLS 628
            A   IHG+    I   +Q+ +  + P H     +LS
Sbjct: 993  ASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLS 1028



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/427 (25%), Positives = 175/427 (40%), Gaps = 67/427 (15%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           Q+H  V K+G    T     L S+Y KC S         + AAR+VFDE P  +   W +
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCAS---------LQAARKVFDETPHPNVHLWNS 72

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
            +  Y +    +        M    G A                      D FT    + 
Sbjct: 73  TLRSYCREKQWEETLRLFHLMICTAGEA---------------------PDNFTIPIALK 111

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           ACA   +  LGK +H +  + +   +  F   V +ALV LY KCG++ EA  +F +    
Sbjct: 112 ACAGLRMLELGKVIHGFAKKNDEIGSDMF---VGSALVELYSKCGQMGEALKVFEEFQRP 168

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           D V W ++++ Y                                QN   EE L LFSQM 
Sbjct: 169 DTVLWTSMVTGY-------------------------------QQNNDPEEALALFSQMV 197

Query: 411 LEGFKPCD-YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
           +      D       +++CA L  ++ G  +H  ++   +D  L   N+L+ +YA+ G  
Sbjct: 198 MMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCE 257

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           + A  +F+ MP  D +SW+ MIA    +     A+ L+ +M+++   P+ +T ++ L AC
Sbjct: 258 KIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQAC 317

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
             +  ++EG++    +    G           ID+  +     EA D+   LP K     
Sbjct: 318 AVSRNLEEGKK-IHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLP-KKDVVS 375

Query: 590 WEALLAG 596
           W ALL+G
Sbjct: 376 WVALLSG 382



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/472 (23%), Positives = 195/472 (41%), Gaps = 106/472 (22%)

Query: 32   SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
            S  +  HA + + G +    I+ +   +Y    ++  A  +F++IP P            
Sbjct: 734  SCLKKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPC----------- 782

Query: 92   SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                                  +  +N MI  ++ +    +++EL+  M    +KPD F 
Sbjct: 783  ----------------------SFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFA 820

Query: 152  FTSVLSALALIVEEEK-QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
            F   L + A + + ++ + +  H         LF     AL+ +Y KC           +
Sbjct: 821  FPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDA--ALVDMYAKCGD---------I 869

Query: 211  GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
             AAR VFD+M  RD +SWT+M++GY  N Y      F D M            SG +   
Sbjct: 870  EAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRS----------SGVIPNR 919

Query: 271  LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
            + +L            SV+ AC N G  R G+  H+Y+++T      EF + V  A++ +
Sbjct: 920  VSIL------------SVLLACGNLGALRKGEWFHSYVIQTGF----EFDILVATAIMDM 963

Query: 331  YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
            Y KCG ++ AR +F++   +DLV W+A++++Y                            
Sbjct: 964  YSKCGSLDLARCLFDETAGKDLVCWSAMIASY---------------------------- 995

Query: 391  SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY- 449
                 +G+G + + LF QM   G +P    F   +++C+  G LE G+ ++ QL+   + 
Sbjct: 996  ---GIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGK-MYFQLMTEEFV 1051

Query: 450  -DSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
                LS    ++ +  R G +  A  +   MP   D+  W +++ A   H N
Sbjct: 1052 IARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNN 1103



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 177/381 (46%), Gaps = 80/381 (20%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           VH  +I   F     ++N L+++Y K+     A  LF ++P+ D+++ +T+IA       
Sbjct: 228 VHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIA------- 280

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
                                      Y++N   + A+ LF +M     +P++ T  S L
Sbjct: 281 --------------------------CYANNEAANEALNLFHEMIEKRFEPNSVTVVSAL 314

Query: 157 SALALI--VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
            A A+   +EE K   ++H   V  G  L  SV  ALI +Y+KC S P          A 
Sbjct: 315 QACAVSRNLEEGK---KIHKIAVWKGFELDFSVSTALIDMYMKC-SCP--------DEAV 362

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS-ENVGVAWNALISGYVHRELKM 273
            +F  +P++D +SW  +++GY +N           GM+ +++GV  N L  G        
Sbjct: 363 DLFQRLPKKDVVSWVALLSGYAQN-----------GMAYKSMGVFRNMLSDG-------- 403

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
               IQ D      +++A +  G+F+    +H Y++R+        ++ V  +L+ LY K
Sbjct: 404 ----IQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNS----NVFVGASLIELYSK 455

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER-----NLLSWTV 388
           CG + +A  +F  M  RD+V W+++++AY   G   EA  +F+ M +      N +++  
Sbjct: 456 CGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLS 515

Query: 389 MISGLAQNGYGEEGLKLFSQM 409
           ++S  +  G  EEGLK+F +M
Sbjct: 516 ILSACSHAGLVEEGLKIFDRM 536



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 116/254 (45%), Gaps = 41/254 (16%)

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           +  AC N    R   Q+H+ + +T       F+  +N    +LY KC  +  AR +F++ 
Sbjct: 10  LFQACNNG---RSVSQLHSQVFKTGILHDTFFATKLN----SLYAKCASLQAARKVFDET 62

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
           P  ++  WN+ L +Y                RE+    W             EE L+LF 
Sbjct: 63  PHPNVHLWNSTLRSYC---------------REKQ---W-------------EETLRLFH 91

Query: 408 QMRLE-GFKPCDYAFAGAITSCAGLGALENGRQLHA-QLVHSGYDSSLSAGNALITMYAR 465
            M    G  P ++    A+ +CAGL  LE G+ +H     +    S +  G+AL+ +Y++
Sbjct: 92  LMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSK 151

Query: 466 CGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM-LKEGILPDRITFLT 524
           CG +  A  VF      D+V W +M+    Q+ +   A+ L+ QM + + ++ D +T ++
Sbjct: 152 CGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVS 211

Query: 525 VLSACNHAGLVKEG 538
           V+SAC     VK G
Sbjct: 212 VVSACAQLLNVKAG 225



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 113/577 (19%), Positives = 234/577 (40%), Gaps = 84/577 (14%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D    T LI  Y        A ++F + P K  D V + A+++ Y+ N   + ++ +FR+
Sbjct: 341 DFSVSTALIDMYMKCSCPDEAVDLFQRLPKK--DVVSWVALLSGYAQNGMAYKSMGVFRN 398

Query: 140 MRRDDVKPDNFTFTSVLSALA-LIVEEEKQCMQMHCTVVKSG------------------ 180
           M  D ++PD      +L+A + L + ++  C+  H  VV+SG                  
Sbjct: 399 MLSDGIQPDAVAVVKILAASSELGIFQQALCL--HGYVVRSGFNSNVFVGASLIELYSKC 456

Query: 181 ------TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER-----DELSWT 229
                   LF  ++   + ++   +++  +  R   G A  +FD+M +      + +++ 
Sbjct: 457 GSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRG--GEALEIFDQMVKNSTVRPNNVTFL 514

Query: 230 TMMTGYVKNDYLDAAREFLDGM---------SENVGVAWNALIS-GYVHRELKML-MLRI 278
           ++++       ++   +  D M         SE+ G+  + L   G + + + ++  + I
Sbjct: 515 SILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPI 574

Query: 279 QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA-----LVTLYWK 333
                 + +++ AC          ++H  +   EA     F L  ++A     L  +Y  
Sbjct: 575 PAGPHVWGALLGAC----------RIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAV 624

Query: 334 CGKVNEARDIFNQMPERDLVSW---------NAILSAYVSAGLIDEAKSLFEAMRE-RNL 383
            GK +   ++  ++ ER L              + S   S     +++ ++E +R+    
Sbjct: 625 DGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYELLRKLEAQ 684

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
           +   V I  L    +    +  F Q R++  +   Y   G+      +      ++ HA+
Sbjct: 685 MGKEVYIPDLDFLLHDTGAVLQFWQ-RIKATES-KYKTIGSAPGTDTISCFSCLKKTHAK 742

Query: 444 LVHSG--YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGA 501
           +   G  YDS +    A+  MY     ++AA+ VF  +PN  S  WN MI      G   
Sbjct: 743 IFAYGLQYDSRILTKFAI--MYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFL 800

Query: 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY--A 559
            ++ELY +M+++G+ PD+  F   L +C     ++ G+   + +          D +  A
Sbjct: 801 SSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHL---VCCGCSNDLFVDA 857

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
             +D+  + G    A+ V D +  +     W ++++G
Sbjct: 858 ALVDMYAKCGDIEAARLVFDKMAVRDLVS-WTSMISG 893



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 13/172 (7%)

Query: 433 ALENGR---QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
           A  NGR   QLH+Q+  +G          L ++YA+C  ++AA  VF+  P+ +   WN+
Sbjct: 13  ACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNS 72

Query: 490 MIAALGQHGNGARAIELYEQML-KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG- 547
            + +  +       + L+  M+   G  PD  T    L AC    +++ G+     +HG 
Sbjct: 73  TLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGK----VIHGF 128

Query: 548 -PYGIPPGEDHY--ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
                  G D +  +  ++L  + G+  EA  V +    +P   +W +++ G
Sbjct: 129 AKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQ-RPDTVLWTSMVTG 179


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/559 (40%), Positives = 337/559 (60%), Gaps = 17/559 (3%)

Query: 241 LDAAREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISA 291
           LD +    +   E    +++A+I  +V   L         +ML   ++ + FT++SV+ +
Sbjct: 95  LDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKS 154

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           C+       GK +H   ++          L V   LV +Y + G V  AR +F++MPER 
Sbjct: 155 CS----LESGKVLHCQAIKLGLGS----DLYVRTGLVDVYARGGDVVCARQLFDKMPERS 206

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
           LVS   +L+ Y   G +D+A+SLFE M+ER+++ W VMI G AQ+G   E LKLF +M +
Sbjct: 207 LVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLV 266

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
               P +      +++C  LGALE+GR +H+ + + G   ++  G ALI MY++CG +E 
Sbjct: 267 AKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLED 326

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
           A  VF+ + + D V+WN+MI     HG    A++L+E+M + G  P  ITF+ +LSAC H
Sbjct: 327 ARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGH 386

Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
            GLV+EGR +F  M   YGI P  +HY   ++LL RAG   EA  ++ ++       +W 
Sbjct: 387 GGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWG 446

Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
            LL  CR+H NI LG + A+ L      ++GTYVLLSNMYA  G W+  A++R LM++ G
Sbjct: 447 TLLGCCRLHVNIKLGEEIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHG 506

Query: 652 VKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDME 711
           ++KE GCS IEVDNKVH F+  +  HP+++ +Y  L ++   ++  GY P T  VLHD+ 
Sbjct: 507 IEKEHGCSSIEVDNKVHEFVAGERKHPKSKEIYVMLNEINSWLKARGYTPQTDVVLHDLR 566

Query: 712 SDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVR 771
            +QKE +L  HSEKLA+AFGL+    G TV+++KNLR+C DCH   K +S++ GR+IV+R
Sbjct: 567 EEQKEQSLEVHSEKLAIAFGLISTKPGTTVKIVKNLRVCSDCHTVMKMISEITGRKIVMR 626

Query: 772 DGKRFHHFRDGKCSCGDYW 790
           D  RFHHF DG CSCGDYW
Sbjct: 627 DRNRFHHFEDGLCSCGDYW 645



 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 115/407 (28%), Positives = 184/407 (45%), Gaps = 64/407 (15%)

Query: 117 YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTV 176
           ++A+I ++  +     A   +  M    V+P+ FTF+SVL + +L  E  K    +HC  
Sbjct: 113 FSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCSL--ESGKV---LHCQA 167

Query: 177 VKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV 236
           +K G G    V   L+ VY +            +  AR++FD+MPER  +S TTM+T Y 
Sbjct: 168 IKLGLGSDLYVRTGLVDVYARGGD---------VVCARQLFDKMPERSLVSLTTMLTCYS 218

Query: 237 KNDYLDAAREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTS 287
           K   LD AR   +GM E   V WN +I GY    +         +ML+ +   +E T  +
Sbjct: 219 KMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLA 278

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           V+SAC   G    G+ +H+Y+   E K   + ++ V  AL+ +Y KCG + +AR +F+++
Sbjct: 279 VLSACGQLGALESGRWIHSYI---ENKGI-QINVHVGTALIDMYSKCGSLEDARLVFDRI 334

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
            ++D+V+WN+++  Y   G    A  LFE M E                           
Sbjct: 335 RDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTE--------------------------- 367

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARC 466
                G KP D  F G +++C   G +E GR     +    G +  +     ++ +  R 
Sbjct: 368 ----TGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRA 423

Query: 467 GVVEAA-NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           G +E A   V N     D V W  ++     H N    I+L E++ K
Sbjct: 424 GHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVN----IKLGEEIAK 466



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 102/414 (24%), Positives = 181/414 (43%), Gaps = 51/414 (12%)

Query: 16  YASQLQLC--DPRNPITSSLARS--------VHAHMISSGFKPREHIINRLIDIYCKSLK 65
           Y SQ+  C  +P     SS+ +S        +H   I  G     ++   L+D+Y +   
Sbjct: 132 YYSQMLSCGVEPNAFTFSSVLKSCSLESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGD 191

Query: 66  LVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYS 125
           +V AR LFD++P+  +V+ TT++  YS    +  AR +F    +K RD V +N MI  Y+
Sbjct: 192 VVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFE--GMKERDVVCWNVMIGGYA 249

Query: 126 HNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFT 185
            +   + +++LFR M      P+  T  +VLSA   +   E     +H  +   G  +  
Sbjct: 250 QSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESG-RWIHSYIENKGIQINV 308

Query: 186 SVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245
            V  ALI +Y KC S         +  AR VFD + ++D ++W +M+ GY  + +   A 
Sbjct: 309 HVGTALIDMYSKCGS---------LEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHAL 359

Query: 246 EFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
           +  + M+E          +G+            +  + T+  ++SAC + GL   G+   
Sbjct: 360 QLFEEMTE----------TGH------------KPTDITFIGILSACGHGGLVEEGRSFF 397

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA--- 361
             L+R +    P+  +     +V L  + G + EA  +   M    D V W  +L     
Sbjct: 398 R-LMRDKYGIEPK--IEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRL 454

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           +V+  L +E        +  N  ++ ++ +  A  G  E   K+ + M+  G +
Sbjct: 455 HVNIKLGEEIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIE 508



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 138/326 (42%), Gaps = 46/326 (14%)

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
           +Y + G +D +  +F    E N+ S++ +I    Q+   +     +SQM   G +P  + 
Sbjct: 88  SYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFT 147

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
           F+  + SC    +LE+G+ LH Q +  G  S L     L+ +YAR G V  A  +F+ MP
Sbjct: 148 FSSVLKSC----SLESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMP 203

Query: 481 -------------------------------NVDSVSWNAMIAALGQHGNGARAIELYEQ 509
                                            D V WN MI    Q G    +++L+ +
Sbjct: 204 ERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRR 263

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
           ML    +P+ +T L VLSAC   G ++ G R+  +     GI          ID+  + G
Sbjct: 264 MLVAKAIPNEVTVLAVLSACGQLGALESG-RWIHSYIENKGIQINVHVGTALIDMYSKCG 322

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG-----TY 624
              +A+ V D +  K     W +++ G  +HG      Q A QLF+ M          T+
Sbjct: 323 SLEDARLVFDRIRDKDVVA-WNSMIVGYAMHGF----SQHALQLFEEMTETGHKPTDITF 377

Query: 625 VLLSNMYANLGRWDDAARVRKLMRDR 650
           + + +   + G  ++     +LMRD+
Sbjct: 378 IGILSACGHGGLVEEGRSFFRLMRDK 403



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 9/146 (6%)

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           Q+HA L+  G   +      L   YA  G ++ +  VFNT    +  S++A+I +  Q  
Sbjct: 65  QIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSR 124

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
              RA   Y QML  G+ P+  TF +VL +C+      E  +         G+  G D Y
Sbjct: 125 LFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS-----LESGKVLHCQAIKLGL--GSDLY 177

Query: 559 AR--FIDLLCRAGKFSEAKDVIDSLP 582
            R   +D+  R G    A+ + D +P
Sbjct: 178 VRTGLVDVYARGGDVVCARQLFDKMP 203


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 234/602 (38%), Positives = 358/602 (59%), Gaps = 67/602 (11%)

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           N L+++Y KC S         +  AR+VF++MP+RD ++WTT+++GY ++D    A  F 
Sbjct: 99  NTLLNMYAKCGS---------LEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFF 149

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
           +                      +ML      +EFT +SVI A A       G Q+H + 
Sbjct: 150 N----------------------QMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFC 187

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
           +    K   + ++ V +AL+ LY + G +++A+ +F+ +  R+ VSWNA           
Sbjct: 188 V----KCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNA----------- 232

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
                               +I+G A+    E+ L+LF  M  +GF+P  +++A    +C
Sbjct: 233 --------------------LIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGAC 272

Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
           +  G LE G+ +HA ++ SG      AGN L+ MYA+ G +  A  +F+ +   D VSWN
Sbjct: 273 SSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWN 332

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP 548
           +++ A  QHG G  A+  +E+M + GI P+ I+FL+VL+AC+H+GL+ EG  Y+E M   
Sbjct: 333 SLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD 392

Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
            GI P   HY   +DLL RAG  + A   I+ +P +P+A IW+ALL  CR+H N +LG  
Sbjct: 393 -GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAY 451

Query: 609 AAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVH 668
           AAE +F+L P   G +V+L N+YA+ GRW+DAARVRK M++ GVKKEP CSW+E++N +H
Sbjct: 452 AAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIH 511

Query: 669 VFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAV 728
           +F+ +D  HP+ + + +  E+++ ++++LGYVPDT  V+  ++  ++E  L  HSEK+A+
Sbjct: 512 MFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIAL 571

Query: 729 AFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788
           AF L+  P G+T+ + KN+R+CGDCH A K  SKVVGREI+VRD  RFHHF+DG CSC D
Sbjct: 572 AFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKD 631

Query: 789 YW 790
           YW
Sbjct: 632 YW 633



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 119/447 (26%), Positives = 199/447 (44%), Gaps = 78/447 (17%)

Query: 65  KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
           ++V+A  L   I + DIV   TL+  Y+   +++ AR++F K P   RD V +  +I+ Y
Sbjct: 80  RIVHAHIL-QSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP--QRDFVTWTTLISGY 136

Query: 125 SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM--QMHCTVVKSGTG 182
           S +     A+  F  M R    P+ FT +SV+ A A    E + C   Q+H   VK G  
Sbjct: 137 SQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAA---AERRGCCGHQLHGFCVKCGFD 193

Query: 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLD 242
               V +AL+ +Y +           LM  A+ VFD +  R+++SW  ++ G+ +    +
Sbjct: 194 SNVHVGSALLDLYTR---------YGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTE 244

Query: 243 AAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGK 302
            A E   GM          L  G+            +   F+Y S+  AC+++G    GK
Sbjct: 245 KALELFQGM----------LRDGF------------RPSHFSYASLFGACSSTGFLEQGK 282

Query: 303 QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY 362
            VHAY++++  K          N L+ +Y K G +++AR IF+++ +RD+VSWN++L+AY
Sbjct: 283 WVHAYMIKSGEK----LVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAY 338

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
              G                               +G+E +  F +MR  G +P + +F 
Sbjct: 339 AQHG-------------------------------FGKEAVWWFEEMRRVGIRPNEISFL 367

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
             +T+C+  G L+ G   +  +   G          ++ +  R G +  A      MP  
Sbjct: 368 SVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIE 427

Query: 483 DSVS-WNAMIAALGQHGN---GARAIE 505
            + + W A++ A   H N   GA A E
Sbjct: 428 PTAAIWKALLNACRMHKNTELGAYAAE 454



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 156/307 (50%), Gaps = 20/307 (6%)

Query: 308 LLRTEAKPTPEFSLPVNNALV-TLYWKC--------GKVNEARDIFNQMPERDLVSWNAI 358
           LLRT +       +P +     TL  KC        G++  A  I   +   D+V  N +
Sbjct: 43  LLRTSSNDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAH-ILQSIFRHDIVMGNTL 101

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
           L+ Y   G ++EA+ +FE M +R+ ++WT +ISG +Q+    + L  F+QM   G+ P +
Sbjct: 102 LNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNE 161

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478
           +  +  I + A       G QLH   V  G+DS++  G+AL+ +Y R G+++ A  VF+ 
Sbjct: 162 FTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDA 221

Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG 538
           + + + VSWNA+IA   +     +A+EL++ ML++G  P   ++ ++  AC+  G +++G
Sbjct: 222 LESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQG 281

Query: 539 RRYFETMHGPYGIPPGEDHYA----RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
           +     +H  Y I  GE   A      +D+  ++G   +A+ + D L  K     W +LL
Sbjct: 282 K----WVHA-YMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNSLL 335

Query: 595 AGCRIHG 601
                HG
Sbjct: 336 TAYAQHG 342



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 35/143 (24%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           YAS    C     +     + VHA+MI SG K      N L+D+Y KS  +  AR +FD 
Sbjct: 265 YASLFGACSSTGFLEQ--GKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDR 322

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           + + D+V+                                 +N+++TAY+ +  G  A+ 
Sbjct: 323 LAKRDVVS---------------------------------WNSLLTAYAQHGFGKEAVW 349

Query: 136 LFRDMRRDDVKPDNFTFTSVLSA 158
            F +MRR  ++P+  +F SVL+A
Sbjct: 350 WFEEMRRVGIRPNEISFLSVLTA 372


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 256/717 (35%), Positives = 375/717 (52%), Gaps = 74/717 (10%)

Query: 77  PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
           P P  +    L+  YS  D    A+ + + TP   R  V + A+I     N    +A+  
Sbjct: 39  PLPSFI-YNHLVNMYSKLDRPNSAQLLLSLTP--NRSVVTWTALIAGSVQNGRFTSALFH 95

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           F +MRRD ++P++FTF     A   +        Q+H   VK+G          +  V+V
Sbjct: 96  FSNMRRDSIQPNDFTFPCAFKASGSL-RSPLVGKQVHALAVKAGQ---------ISDVFV 145

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV-KNDYLDAAREFLDGMSENV 255
            C +    S   L   AR++FDEMPER+  +W   ++  V +  Y DA   F++   E  
Sbjct: 146 GCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHE-- 203

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
              W                   + +  T+ + ++ACA +   RLG+Q+H ++L++    
Sbjct: 204 --GW-------------------EPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGF-- 240

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
             E  + V N L+  Y KC +V  +  IF+                              
Sbjct: 241 --EADVSVANGLIDFYGKCHQVGCSEIIFS------------------------------ 268

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
             + + N +SW  MI    QN   E+   +F + R EG +P D+  +  +++CAGL  LE
Sbjct: 269 -GISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLE 327

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            G+ +H   V +    ++  G+AL+ MY +CG +E A   F+ MP  + V+WNAMI    
Sbjct: 328 VGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYA 387

Query: 496 QHGNGARAIELYEQML--KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
             G    A+ L+++M      + P+ +TF+ VLSAC+ AG V  G   FE+M G YGI P
Sbjct: 388 HQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEP 447

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
           G +HYA  +DLL RAG   +A   I  +P +P+  +W ALL   ++ G  +LG  AA+ L
Sbjct: 448 GAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNL 507

Query: 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVD 673
           F+L P  +G +VLLSNM+A  GRW++A  VRK M+D G+KK  GCSWI   N VHVF   
Sbjct: 508 FELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAK 567

Query: 674 DTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLM 733
           DT+H     +   L +L  EM   GY+PDT F L D+E ++K   +  HSEK+A+AFGL+
Sbjct: 568 DTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAFGLI 627

Query: 734 KLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            +P G  +R+ KNLRICGDCH+A KF+S +VGREI+VRD   FH FRD +CSC DYW
Sbjct: 628 SIPAGVPIRITKNLRICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 684



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 120/264 (45%), Gaps = 38/264 (14%)

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
           +  S++ +  ++   RLG+  HA +++T   P P F   + N LV +Y K  + N A+ +
Sbjct: 8   SLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSF---IYNHLVNMYSKLDRPNSAQLL 64

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
            +  P R +V+W A                               +I+G  QNG     L
Sbjct: 65  LSLTPNRSVVTWTA-------------------------------LIAGSVQNGRFTSAL 93

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
             FS MR +  +P D+ F  A  +   L +   G+Q+HA  V +G  S +  G +   MY
Sbjct: 94  FHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMY 153

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
           ++ G+ E A  +F+ MP  +  +WNA ++     G    A+  + +   EG  P+ ITF 
Sbjct: 154 SKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFC 213

Query: 524 TVLSACNHAGLVKEGRRYFETMHG 547
             L+AC  A  ++ GR+    +HG
Sbjct: 214 AFLNACAGASYLRLGRQ----LHG 233



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 163/400 (40%), Gaps = 77/400 (19%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R +H  ++ SGF+    + N LID Y K  ++  +  +F  I +P+ V+         
Sbjct: 227 LGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVS--------- 277

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                   + +MI +Y  N     A  +F   R++ ++P +F  
Sbjct: 278 ------------------------WCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMV 313

Query: 153 TSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           +SVLSA A L V E  +   +H   VK+       V +AL+ +Y KC S         + 
Sbjct: 314 SSVLSACAGLSVLEVGK--SVHTLAVKACVVGNIFVGSALVDMYGKCGS---------IE 362

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A R FDEMPER+ ++W  M+ GY      D A    D                    E+
Sbjct: 363 DAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFD--------------------EM 402

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL-RTEAKPTPEFSLPVNNALVTL 330
                R+  +  T+  V+SAC+ +G   +G ++   +  R   +P  E    V    V L
Sbjct: 403 TCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACV----VDL 458

Query: 331 YWKCGKVNEARDIFNQMPERDLVS-WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWT-- 387
             + G V +A     +MP R  VS W A+L A    G  +  K   + + E + L     
Sbjct: 459 LGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNH 518

Query: 388 VMISGL-AQNGYGEEGLKLFSQMRLEGFKP---CDYAFAG 423
           V++S + A  G  EE   +  +M+  G K    C +  AG
Sbjct: 519 VLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAG 558


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 273/787 (34%), Positives = 410/787 (52%), Gaps = 75/787 (9%)

Query: 27  NPITSSLARSVHAHMISSG---FKPR-EHIINRLIDIYCKSLKLVYARTLFDEIPQPDIV 82
            P +   A  +HA + +SG    +P  EH+++ L +       L Y  +LFD +P     
Sbjct: 8   TPRSVRQASQLHALLTTSGRIAHRPSAEHLLSSLTNTISAPRHLRYVLSLFDRLPHS--- 64

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR 142
             TT +                           F  A+      ++     + L R MR 
Sbjct: 65  --TTFL---------------------------FDTALRACLQASAGADHPVLLLRRMRS 95

Query: 143 DDVKPDNFTFTSVLSALALIVEEEKQ-CMQMHC----TVVKSGTGLFTSVLNALISVYVK 197
             V+   FTF  V    A         C+ +H     T++ S   L   V N LI +Y  
Sbjct: 96  GGVRTGAFTFHFVFRCCAAGARARAGLCLMLHAACLRTMLPSAAPL---VANPLIHMY-- 150

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
                  +S  L   ARR FDE+P +D + W T++ G V+   LD AR  L    E   V
Sbjct: 151 -------ASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVV 203

Query: 258 AWNALISGY---------VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
           +W +LI+GY         V+    ML   +  DE      +SAC+      LG+ +H  +
Sbjct: 204 SWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLV 263

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFN-----QMPERDLVSWNAILSAYV 363
            +   + T    +    AL+ +Y KCG + +A+ +F+     Q PE     WNAI+  Y 
Sbjct: 264 GQKRIRMTDNLVV----ALIDMYAKCGDIAQAQAVFDAVGRGQKPE----PWNAIIDGYC 315

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
             G +D A+SLF+ M  R+++++  MI+G   +G   + L+LF QMR  G +  ++    
Sbjct: 316 KLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVS 375

Query: 424 AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
            +T+CA LGAL +GR LHA +     +  +  G AL+ MY +CG V+ A  VF+ M   D
Sbjct: 376 LLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERD 435

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFE 543
             +W AMIA L  +G G  A+E + QM ++G  P  +T++ VL+AC+H+ L+ EGR +F 
Sbjct: 436 VHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFN 495

Query: 544 TMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNI 603
            M   + + P  +HY   IDLL R+G   EA  ++ ++P +P+A IW ++L+ CR+H NI
Sbjct: 496 EMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSILSACRVHKNI 555

Query: 604 DLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEV 663
           DL   AAE L +L P     YV L N+Y +  +W DA RVR LM +RGVKK  G S I V
Sbjct: 556 DLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWADAKRVRMLMEERGVKKTAGYSSITV 615

Query: 664 DNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHS 723
             +VH F+ +D +HP    +   +E++   ++ +GY P T  +  D++ ++KE AL  HS
Sbjct: 616 AGQVHKFVANDQSHPWTLEIMAMMEEIACRLKSVGYSPVTSRIAVDVDEEEKEQALLAHS 675

Query: 724 EKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGK 783
           EK+A+AFGL+ LP    + ++KNLR+C DCH+A K +S++  REI+VRD  RFHHFRDG 
Sbjct: 676 EKIAIAFGLISLPPSLPIHIVKNLRVCEDCHSAIKLVSQLWNREIIVRDRSRFHHFRDGA 735

Query: 784 CSCGDYW 790
           CSC D+W
Sbjct: 736 CSCNDFW 742


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/617 (38%), Positives = 354/617 (57%), Gaps = 65/617 (10%)

Query: 212  AARRVFDEMPERDELSWTTMMTGYVKND-YLDAAREFLDGMSENVGVAWNALISGYVHRE 270
            + R +FDE+P+++ + +  M+  YV N  Y DA   F +             ++G+    
Sbjct: 1078 STRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKN-------------MAGH---- 1120

Query: 271  LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
                   I  D +TY  V+ A + S    +G Q+HA ++R       + ++ V N L+++
Sbjct: 1121 ------GIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGL----DLNVFVGNGLISM 1170

Query: 331  YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA------------------- 371
            Y KCG + EA  + +ZMP RD+VSWN++++     G  D+A                   
Sbjct: 1171 YGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTM 1230

Query: 372  ------------------KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
                              K +F  +  ++L+SW VMI+    N    E + +F QM    
Sbjct: 1231 ASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHA 1290

Query: 414  FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473
              P   + A  + +C  L AL  GR++H  +V      +L   NALI MYA+CG +E A 
Sbjct: 1291 VDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAR 1350

Query: 474  CVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533
             VF+ M   D VSW +MI+A G +G G  A+ L+ +M   G+ PD I F++VLSAC+HAG
Sbjct: 1351 EVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAG 1410

Query: 534  LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEAL 593
            L+ EGR YF+ M     I P  +H+   +DLL RAG+  EA   I  +P +P+  +W AL
Sbjct: 1411 LLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGAL 1470

Query: 594  LAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653
            L+ CR++ N+ +G+ AA+QLFQL P  +G YVLLSN+YA  GRW+D   VR +M+ +G+K
Sbjct: 1471 LSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIK 1530

Query: 654  KEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESD 713
            K PG S  E+DN+VH FL  D +HP+++ +Y+ L+ LV +M++ GYVP+T   LHD+E +
Sbjct: 1531 KMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVLVGKMKEAGYVPETDSALHDVEEE 1590

Query: 714  QKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDG 773
             KE  L+ HSEKLA+AF ++    G+ +R+ KNLR+CGDCH A K +SK+VGREI +RD 
Sbjct: 1591 DKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDT 1650

Query: 774  KRFHHFRDGKCSCGDYW 790
             RFHHF +G CSCGDYW
Sbjct: 1651 NRFHHFYNGVCSCGDYW 1667



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 144/579 (24%), Positives = 253/579 (43%), Gaps = 114/579 (19%)

Query: 14   NRYASQLQLCD----PRNPITSSLARSVHA--HMISSGFKPR---------EHIINRLID 58
            +R  S+++LCD    P + I++S   +V     ++ S  KP+         E++  +++D
Sbjct: 976  DRTPSRIKLCDNLIDPVDLISASPPSAVKQLQTLVLSIQKPKFTQQXVVLTENLCGQILD 1035

Query: 59   IY--CKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVF 116
                 K LK ++++   D     +      L+ AY+        R +F++ P K  + VF
Sbjct: 1036 KNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKK--NVVF 1093

Query: 117  YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTV 176
            +N MI +Y +N     A+ +F++M    + PD++T+  VL A +   E+    MQ+H  V
Sbjct: 1094 FNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSG-SEDLWVGMQIHAAV 1152

Query: 177  VKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV 236
            V+ G  L   V N LIS+Y KC           +  A RV DZMP RD +SW +++ G  
Sbjct: 1153 VRVGLDLNVFVGNGLISMYGKC---------GCLVEACRVLDZMPCRDVVSWNSLVAGCA 1203

Query: 237  KNDYLDAAREF-----LDGMSENVG--------------------------------VAW 259
            +N   D A E      L G+  + G                                V+W
Sbjct: 1204 RNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSW 1263

Query: 260  NALISGYVHRE---------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
            N +I+ Y++           L+M    +  D  +  SV+ AC +     LG+++H Y++R
Sbjct: 1264 NVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVR 1323

Query: 311  TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
               +P    +L + NAL+ +Y KCG +  AR++F+QM  RD+VSW +++SAY        
Sbjct: 1324 KRLQP----NLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAY-------- 1371

Query: 371  AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
                                     NG G + + LFS+M+  G  P   AF   +++C+ 
Sbjct: 1372 -----------------------GMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSH 1408

Query: 431  LGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWN 488
             G L+ GR     +         +     ++ +  R G V+ A      MP   +   W 
Sbjct: 1409 AGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWG 1468

Query: 489  AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
            A+++A   + N    +   +Q+ +  + P++  +  +LS
Sbjct: 1469 ALLSACRVYSNMIIGLLAADQLFQ--LCPEQSGYYVLLS 1505



 Score = 96.3 bits (238), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 115/253 (45%), Gaps = 10/253 (3%)

Query: 358  ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
            ++ AY   G     + +F+ + ++N++ + VMI     N    + L +F  M   G  P 
Sbjct: 1066 LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 1125

Query: 418  DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
             Y +   + + +G   L  G Q+HA +V  G D ++  GN LI+MY +CG +  A  V +
Sbjct: 1126 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLD 1185

Query: 478  TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL--- 534
             MP  D VSWN+++A   ++G    A+E+ ++M   G+ PD  T  ++L A  +  L   
Sbjct: 1186 ZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNV 1245

Query: 535  --VKE-----GRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSA 587
              VKE       +   + +    +       A  +D+  +    +   D I      P+ 
Sbjct: 1246 SFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPAC 1305

Query: 588  PIWEALLAGCRIH 600
                ALL G RIH
Sbjct: 1306 GDLSALLLGRRIH 1318



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 89/204 (43%), Gaps = 28/204 (13%)

Query: 438  RQLHAQL-VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
            ++LH+++ +     S+ S G  L+  YA CG   +   +F+ +P  + V +N MI +   
Sbjct: 1044 KKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVN 1103

Query: 497  HGNGARAIELYEQMLKEGILPDRITFLTVLSACN-----------HAGLVKEGRRYFETM 545
            +   + A+ +++ M   GI PD  T+  VL A +           HA +V+ G       
Sbjct: 1104 NHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLD-LNVF 1162

Query: 546  HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDL 605
             G              I +  + G   EA  V+D +P +     W +L+AGC  +G  D 
Sbjct: 1163 VG-----------NGLISMYGKCGCLVEACRVLDZMPCRDVVS-WNSLVAGCARNGQFDD 1210

Query: 606  GIQAAE--QLFQLMPHHAGTYVLL 627
             ++  +  +L  L P  AGT   L
Sbjct: 1211 ALEVCKEMELLGLKP-DAGTMASL 1233


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 266/766 (34%), Positives = 401/766 (52%), Gaps = 109/766 (14%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
           S L R++HAH+I      R H+                        P P  ++   L+  
Sbjct: 22  SILGRTIHAHII------RTHVT-----------------------PLPSFLS-NHLVNM 51

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
           YS  D +  A+ + + T L  R  V + ++I+   HN     A+  F +MRRD+V+P++F
Sbjct: 52  YSKLDLLNSAQHVLSLTHL--RTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQPNDF 109

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           TF  V  A A  V+      Q+H   +K G          +  V+V C            
Sbjct: 110 TFPCVFKASAF-VQIPMTGKQIHGLALKGGM---------IYDVFVGCSCFDMYCKTGFR 159

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKN----DYLDAAREFLDGMSENVGVAWNALISGY 266
           G A  +FDEMP+R+  +W   ++  V++    D + A +EFL                  
Sbjct: 160 GDACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFL-----------------C 202

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
           VH E          +  T+ + ++AC +     LG+Q+HA+++R   K      + V N 
Sbjct: 203 VHGE---------PNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKE----DVSVANG 249

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           L+  Y KCG +  A  +FN++  R                              +N++SW
Sbjct: 250 LIDFYGKCGDIVSAEMVFNRIGNR------------------------------KNVVSW 279

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
             M++ L QN   E    +F Q R E  +P D+  +  +++CA LG LE GR +HA  V 
Sbjct: 280 CSMLAALVQNHEEERACMVFLQARKE-VEPTDFMISSVLSACAELGGLELGRSVHALAVK 338

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
           +  + ++  G+AL+ MY +CG +E A  VF+ +P  + V+WNAMI      G+   A+ L
Sbjct: 339 ACVEDNIFVGSALVDMYGKCGSIENAEQVFSELPERNLVTWNAMIGGYAHQGDIDMALRL 398

Query: 507 YEQML--KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
           +E+M     GI P  +T +++LS C+  G V+ G + FE+M   YGI PG +H+A  +DL
Sbjct: 399 FEEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRLNYGIEPGAEHFACVVDL 458

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624
           L R+G    A + I ++  +P+  +W ALL  CR+HG  +LG  AAE+LF+L    +G +
Sbjct: 459 LGRSGLVDRAYEFIQNMAIQPTISVWGALLGACRMHGKTELGKIAAEKLFELDHVDSGNH 518

Query: 625 VLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVY 684
           V+LSNM A+ GRW++A  VRK M+D G+KK  G SWI V N++HVF   D++H     + 
Sbjct: 519 VVLSNMLASAGRWEEATVVRKEMKDIGIKKNVGYSWIAVKNRIHVFQAKDSSHDRNSEIQ 578

Query: 685 KYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVL 744
             L +L   M++ GYVPDT   L D+E ++K   +  HSEK+A+AFGL+ LP G  +R+ 
Sbjct: 579 AMLGKLRGGMKEAGYVPDTNLSLFDLEDEEKASEVWYHSEKIALAFGLIALPQGVPIRIT 638

Query: 745 KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KNLRICGDCH+A KF+S++VGREI+VRD  RFH F+DG CSC DYW
Sbjct: 639 KNLRICGDCHSAIKFISRIVGREIIVRDNHRFHRFKDGCCSCKDYW 684


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 227/586 (38%), Positives = 347/586 (59%), Gaps = 26/586 (4%)

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
           S  SL+  A R+F ++   +   +  M+ G+  +   D A  F                 
Sbjct: 64  SGTSLIDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHF----------------- 106

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
            YV  + + L+     D  T+  ++ +C       +G Q H +++    K   E  + V 
Sbjct: 107 -YVQSQRQGLLP----DNLTFPFLVKSCTKLHCISMGSQAHGHII----KHGFEKDVYVQ 157

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
           N+LV +Y   G    A  IF +M   D+VSW +++  +   G ++ A+ LF+ M E+NL+
Sbjct: 158 NSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLV 217

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
           +W+ MISG AQN + ++ ++LF  ++ +G +  +      I+SCA LGALE G + H  +
Sbjct: 218 TWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYV 277

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
           V +G   +L  G AL+ MYARCG ++ A  VF  +P  D++SW A+IA L  HG   R++
Sbjct: 278 VKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSL 337

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
           + +  M++ G+ P  ITF  VLSAC+H GLV+ G + FE+M   + + P  +HY   +DL
Sbjct: 338 KYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDL 397

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624
           L RAGK  EA+  +  +P KP+AP+W ALL  CRIH N ++G +  + L QL+P H+G Y
Sbjct: 398 LGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLLPQHSGYY 457

Query: 625 VLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVY 684
           VLLSN+YAN   W+    +R++M+ +G+KK PG S IE+D +VH F + D++HPE   + 
Sbjct: 458 VLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIGDSSHPEMDKIE 517

Query: 685 KYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVL 744
           +  E++++ +R  GY  +T   L D++ ++KE AL  HSEKLA+AFG+M+   G  +R++
Sbjct: 518 RMWEEILMRIRAAGYRGNTADALFDIDEEEKESALHRHSEKLAIAFGMMRSEAGTPIRIV 577

Query: 745 KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KNLR+C DCH A K +SKV GRE++VRD  RFHHFR G CSC DYW
Sbjct: 578 KNLRVCEDCHTATKLISKVFGRELIVRDRNRFHHFRQGLCSCMDYW 623



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 141/540 (26%), Positives = 232/540 (42%), Gaps = 99/540 (18%)

Query: 64  LKLVYARTLFDEIPQPDIVARTTLIA----AYSASDNVKLAREMFNKTPLKMRDTVFYNA 119
           LK+++A  +   I   D+ A + LIA      S +  +  A  +F++  ++  +   +NA
Sbjct: 33  LKIIHAYMIRTHII-CDVFAASRLIAFCVDPSSGTSLIDYASRIFSQ--IQNPNLFIFNA 89

Query: 120 MITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT---- 175
           MI  +S + N   A   +   +R  + PDN TF  ++          K C ++HC     
Sbjct: 90  MIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLV----------KSCTKLHCISMGS 139

Query: 176 -----VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
                ++K G      V N+L+ +Y     +          AA  +F  M   D +SWT+
Sbjct: 140 QAHGHIIKHGFEKDVYVQNSLVHMYATFGDTE---------AATLIFQRMYYVDVVSWTS 190

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE--------LKMLMLR-IQLD 281
           M+ G+ K   +++AR+  D M E   V W+ +ISGY             K+L  + ++ +
Sbjct: 191 MIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRAN 250

Query: 282 EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEAR 341
           E    SVIS+CA+ G   LG++ H Y++    K     +L +  ALV +Y +CG +++A 
Sbjct: 251 ETVMVSVISSCAHLGALELGERAHDYVV----KNGMTLNLILGTALVDMYARCGSIDKAV 306

Query: 342 DIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEE 401
            +F  +PERD +SW                               T +I+GLA +GY E 
Sbjct: 307 WVFEDLPERDTLSW-------------------------------TALIAGLAMHGYSER 335

Query: 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG-YDSSLSAGNALI 460
            LK F+ M   G  P D  F   +++C+  G +E G Q+   +      +  L     ++
Sbjct: 336 SLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMV 395

Query: 461 TMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN---GARAIELYEQMLKEGIL 516
            +  R G +E A      MP   ++  W A++ A   H N   G R  ++  Q+     L
Sbjct: 396 DLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQL-----L 450

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFE--TMHGPYGI--PPGEDHYARFIDLLCRAGKFS 572
           P    +  +LS  N     KE  +  E   M    G+  PPG       I+L  R  KF+
Sbjct: 451 PQHSGYYVLLS--NIYANAKEWEKVTEMRQMMKAKGLKKPPGHS----LIELDGRVHKFT 504



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 162/331 (48%), Gaps = 38/331 (11%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           S+    H H+I  GF+   ++ N L+ +Y        A  +F  +   D+V+ T++I  +
Sbjct: 136 SMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGF 195

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
           +   +V+ AR++F++ P K  + V ++ MI+ Y+ N++   A+ELF+ ++   V+ +   
Sbjct: 196 NKCGDVESARKLFDQMPEK--NLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETV 253

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             SV+S+ A +   E    + H  VVK+G  L   +  AL+ +Y +C S         + 
Sbjct: 254 MVSVISSCAHLGALELG-ERAHDYVVKNGMTLNLILGTALVDMYARCGS---------ID 303

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A  VF+++PERD LSWT ++ G   + Y + + ++   M E          +G   R++
Sbjct: 304 KAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVE----------AGLTPRDI 353

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                       T+T+V+SAC++ GL   G Q+   + R + +  P   L     +V L 
Sbjct: 354 ------------TFTAVLSACSHGGLVERGFQIFESMKR-DHRVEPR--LEHYGCMVDLL 398

Query: 332 WKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
            + GK+ EA     +MP + +   W A+L A
Sbjct: 399 GRAGKLEEAERFVLKMPVKPNAPVWGALLGA 429


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/578 (40%), Positives = 348/578 (60%), Gaps = 58/578 (10%)

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           AR VFD+MP RD +SWT ++ GY +N Y+ A         E +G+  +            
Sbjct: 11  ARHVFDKMPSRDVVSWTYLIAGYAQN-YMPA---------EAIGLLPD------------ 48

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           ML  R + + FT+TS++ A    G   +G+Q+HA  +    K   +  + V +AL+ +Y 
Sbjct: 49  MLRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAV----KYNWDEDVYVGSALLDMYA 104

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           +C +                               +D A  +F+ +  +N +SW  +I+G
Sbjct: 105 RCEQ-------------------------------MDMAIMVFDRLVSKNEVSWNALIAG 133

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
            A+   GE  L  F++M+  GF    + ++   ++ A +GALE GR +HA L+ SG   +
Sbjct: 134 FARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLT 193

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
              GN ++ MYA+ G +  A  VF+ M   D V+WN M+ AL Q+G G  A+  +E++ K
Sbjct: 194 AFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRK 253

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
            GI  ++ITFL+VL+AC+H GLVKEG+ YF+ M   Y + P  DHY  F+DLL RAG   
Sbjct: 254 CGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMK-DYNVQPEIDHYVSFVDLLGRAGLLK 312

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632
           EA   +  +P +P+A +W ALL  CR+H N  +G  AA+ +F+L P   G  VLL N+YA
Sbjct: 313 EALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYA 372

Query: 633 NLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVL 692
           + G+W+DAARVRK+M+  GVKKEP CSW++++N VH+F+ DD  HP++  +Y+  E++ +
Sbjct: 373 STGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEINM 432

Query: 693 EMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGD 752
            ++K GYVP+T  VL  +   ++E  L  HSEK+A+AF L+ +P GA++R++KN+RICGD
Sbjct: 433 RIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGASIRIMKNIRICGD 492

Query: 753 CHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           CH+AFK++SKV  REIVVRD  RFHHF +G CSCGDYW
Sbjct: 493 CHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 530



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 52/335 (15%)

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
           Y     V  AR +F+K P   RD V +  +I  Y+ N     AI L  DM R   +P+ F
Sbjct: 2   YCKCGAVSDARHVFDKMP--SRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGF 59

Query: 151 TFTSVLSALALI----VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           TFTS+L A        + E     QMH   VK        V +AL+ +Y +C        
Sbjct: 60  TFTSLLKATGACGGCSIGE-----QMHALAVKYNWDEDVYVGSALLDMYARC-------- 106

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYV-KNDYLDAAREFLDGMSENVGVAWNALISG 265
              M  A  VFD +  ++E+SW  ++ G+  K D      +F +      G         
Sbjct: 107 -EQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGAT------- 158

Query: 266 YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
                            FTY+S+ SA A  G    G+ VHA+L+++  K T      V N
Sbjct: 159 ----------------HFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTA----FVGN 198

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR----ER 381
            ++ +Y K G + +AR +F++M +RDLV+WN +L+A    GL  EA + FE +R    + 
Sbjct: 199 TMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQL 258

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
           N +++  +++  +  G  +EG   F  M+    +P
Sbjct: 259 NQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQP 293



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 121/259 (46%), Gaps = 13/259 (5%)

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
           Y   G + +A+ +F+ M  R+++SWT +I+G AQN    E + L   M    F+P  + F
Sbjct: 2   YCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTF 61

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
              + +    G    G Q+HA  V   +D  +  G+AL+ MYARC  ++ A  VF+ + +
Sbjct: 62  TSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVS 121

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY 541
            + VSWNA+IA   +  +G   +  + +M + G      T+ ++ SA    G +++GR  
Sbjct: 122 KNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWV 181

Query: 542 FETMHGPYGIPPGEDHYA----RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
              +     I  G+   A      + +  ++G   +A+ V D +  K     W  +L   
Sbjct: 182 HAHL-----IKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMD-KRDLVTWNTMLTAL 235

Query: 598 RIHGNIDLGIQAAEQLFQL 616
             +G   LG +A     ++
Sbjct: 236 AQYG---LGKEAVAHFEEI 251



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 62/138 (44%), Gaps = 8/138 (5%)

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           MY +CG V  A  VF+ MP+ D VSW  +IA   Q+   A AI L   ML+    P+  T
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 522 FLTVLSACNHAGLVKEGRRYFETMHG-PYGIPPGEDHY--ARFIDLLCRAGKFSEAKDVI 578
           F ++L A    G    G    E MH         ED Y  +  +D+  R  +   A  V 
Sbjct: 61  FTSLLKATGACGGCSIG----EQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVF 116

Query: 579 DSLPFKPSAPIWEALLAG 596
           D L  K     W AL+AG
Sbjct: 117 DRLVSKNEVS-WNALIAG 133



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 35/141 (24%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R VHAH+I SG K    + N ++ +Y KS  +V AR +FD + +               
Sbjct: 178 GRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDK--------------- 222

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                             RD V +N M+TA +    G  A+  F ++R+  ++ +  TF 
Sbjct: 223 ------------------RDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFL 264

Query: 154 SVLSALAL--IVEEEKQCMQM 172
           SVL+A +   +V+E K    M
Sbjct: 265 SVLTACSHGGLVKEGKHYFDM 285


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 257/723 (35%), Positives = 394/723 (54%), Gaps = 93/723 (12%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+     LI  ++ + ++   R +F+   L  R  V +  +IT Y+ +     A+ELF D
Sbjct: 188 DVSVGCALIDMFAKNGDLVAMRRVFDG--LFERTVVVWTLLITRYAQSGYSDEAVELFLD 245

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M  +  +PD +T +S+LSA   +    +   Q+H   ++ G    + V   L+ +Y K  
Sbjct: 246 MLENGFQPDQYTLSSMLSACTEL-GSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSH 304

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
           +   + +      AR VF+ MP+ + +                               AW
Sbjct: 305 NGQSLHN------AREVFNRMPKHNVM-------------------------------AW 327

Query: 260 NALISGYVHRE----------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
            AL+SGYV R            KML   I+ +  TY+S++ ACAN G    G+Q+H +  
Sbjct: 328 TALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQIHTH-- 385

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL-VSWNAILSAYVSAGLI 368
                                   C K N A          DL V  NA++S Y  +G I
Sbjct: 386 ------------------------CVKSNLA----------DLNVVGNALVSMYAESGSI 411

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
           +EA+  F+ + E+N++S++  + G  ++   ++    +   R+E      + F   I++ 
Sbjct: 412 EEARHAFDQLYEKNMVSFSGNLDGDGRSNTYQD----YQIERME-LGISTFTFGSLISAA 466

Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
           A +G L  G++LHA  + +G+ S  + GN+L++MY+RCG +  A  VF+ M + + +SW 
Sbjct: 467 ASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWT 526

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP 548
           +MI+ L +HG  ARA+EL+  M+  G+ P+ +T++ VLSAC+HAGLVKEG+ +F  M   
Sbjct: 527 SMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKH 586

Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
           +G+ P  +HYA  +DLL R+G   +A D I+ +P +  A +W+ LL  C+ H N+D+G  
Sbjct: 587 HGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEI 646

Query: 609 AAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVH 668
           AA  + QL P     YVLLSN+YA  G WD  AR+R LMRD+ + KE G SW+ VDN +H
Sbjct: 647 AANHVIQLEPQDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIH 706

Query: 669 VFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAV 728
            F   DT+HP+A+ +Y  LE L+ E++ +GYVPDT  VLHDM  + KE  L  HSEK+AV
Sbjct: 707 EFRAGDTSHPQAEEIYTKLETLIREIKVMGYVPDTSVVLHDMSDELKELCLLQHSEKIAV 766

Query: 729 AFGLMKLPGGAT-VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCG 787
           AFGL+        +R+ KNLR+C DCH+A K++SK  GREI++RD  RFH  +DG+CSCG
Sbjct: 767 AFGLISCTSATKPIRIFKNLRVCVDCHSALKYVSKATGREIILRDSNRFHRMKDGECSCG 826

Query: 788 DYW 790
           +YW
Sbjct: 827 EYW 829



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 144/305 (47%), Gaps = 13/305 (4%)

Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE--RNLLSWTVMISGLAQNGYGEEGLKLF 406
           E D V  N++L+ Y     +  A+S+F+ M    R+L+SWT M S L++NG   E L+LF
Sbjct: 81  ETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCLSRNGAEAEALRLF 140

Query: 407 SQMRLEGFKPCDYAFAGAITSC--AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
            +   EG  P  +    A  +C  + L  L  G  L        + + +S G ALI M+A
Sbjct: 141 GETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWGTDVSVGCALIDMFA 200

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           + G + A   VF+ +     V W  +I    Q G    A+EL+  ML+ G  PD+ T  +
Sbjct: 201 KNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSS 260

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA---GKFSEAKDVIDSL 581
           +LSAC   G  + G++   ++    G+          +D+  ++        A++V + +
Sbjct: 261 MLSACTELGSFRLGQQ-LHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRM 319

Query: 582 PFKPSAPIWEALLAGCRIHGNID--LGIQAAEQLFQ-LMPHHAGTYVLLSNMYANLGRWD 638
           P K +   W ALL+G    G+ D  + I   + L + + P+H  TY  +    ANLG  D
Sbjct: 320 P-KHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHI-TYSSMLKACANLGDQD 377

Query: 639 DAARV 643
              ++
Sbjct: 378 SGRQI 382



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 4/97 (4%)

Query: 437 GRQLHAQLVHSG--YDSSLSAGNALITMYARCGVVEAANCVFNTMPN--VDSVSWNAMIA 492
           GR L   L+ +G   ++     N+L+T+Y++C  V AA  VF+ MP    D VSW AM +
Sbjct: 66  GRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMAS 125

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
            L ++G  A A+ L+ + L+EG+LP+  T      AC
Sbjct: 126 CLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQAC 162



 Score = 46.2 bits (108), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 88/212 (41%), Gaps = 47/212 (22%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +HA  + +GF     I N L+ +Y +   LV A  +FDE+   ++++          
Sbjct: 475 GQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVIS---------- 524

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                                  + +MI+  + +     A+ELF DM    VKP++ T+ 
Sbjct: 525 -----------------------WTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYI 561

Query: 154 SVLSAL--ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           +VLSA   A +V+E K+    H  +++   GL   + +    V         +    L+ 
Sbjct: 562 AVLSACSHAGLVKEGKE----HFRMMQKHHGLIPRMEHYACMV-------DLLGRSGLVE 610

Query: 212 AARRVFDEMP-ERDELSWTTMMTGYVKNDYLD 242
            A    +EMP + D L W T++     ++ +D
Sbjct: 611 DALDFINEMPCQVDALVWKTLLGACKTHNNMD 642


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/617 (38%), Positives = 353/617 (57%), Gaps = 65/617 (10%)

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKND-YLDAAREFLDGMSENVGVAWNALISGYVHRE 270
           + R +FDE+P+++ + +  M+  YV N  Y DA   F +             ++G+    
Sbjct: 89  STRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKN-------------MAGH---- 131

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
                  I  D +TY  V+ A + S    +G Q+HA ++R       + ++ V N L+++
Sbjct: 132 ------GIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGL----DLNVFVGNGLISM 181

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA------------------- 371
           Y KCG + EA  + +QMP RD+VSWN++++     G  D+A                   
Sbjct: 182 YGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTM 241

Query: 372 ------------------KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
                             K +F  +  ++L+SW VMI+    N    E + +F QM    
Sbjct: 242 ASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHA 301

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473
             P   + A  + +C  L AL  GR++H  +V      +L   NALI MYA+CG +E A 
Sbjct: 302 VDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAR 361

Query: 474 CVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533
            VF+ M   D VSW +MI+A G +G G  A+ L+ +M   G+ PD I F++VLSAC+HAG
Sbjct: 362 EVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAG 421

Query: 534 LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEAL 593
           L+ EGR YF+ M     I P  +H+   +DLL RAG+  EA   I  +P +P+  +W AL
Sbjct: 422 LLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGAL 481

Query: 594 LAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653
           L+ CR++ N+ +G+ AA+QLFQL P  +G YVLLSN+YA  GRW+D   VR +M+ +G+K
Sbjct: 482 LSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIK 541

Query: 654 KEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESD 713
           K PG S  E+DN+VH FL  D +HP+++ +Y+ L+  V +M++ GYVP+T   LHD+E +
Sbjct: 542 KMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVSVGKMKEAGYVPETDSALHDVEEE 601

Query: 714 QKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDG 773
            KE  L+ HSEKLA+AF ++    G+ +R+ KNLR+CGDCH A K +SK+VGREI +RD 
Sbjct: 602 DKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDT 661

Query: 774 KRFHHFRDGKCSCGDYW 790
            RFHHF +G CSCGDYW
Sbjct: 662 NRFHHFYNGVCSCGDYW 678



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 133/525 (25%), Positives = 229/525 (43%), Gaps = 99/525 (18%)

Query: 51  HIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLK 110
            I+++  DI  K LK ++++   D     +      L+ AY+        R +F++ P K
Sbjct: 43  QILDKNPDI--KYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKK 100

Query: 111 MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM 170
             + VF+N MI +Y +N     A+ +F++M    + PD++T+  VL A +   E+    M
Sbjct: 101 --NVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSG-SEDLWVGM 157

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           Q+H  VV+ G  L   V N LIS+Y KC           +  A RV D+MP RD +SW +
Sbjct: 158 QIHAAVVRVGLDLNVFVGNGLISMYGKC---------GCLVEACRVLDQMPCRDVVSWNS 208

Query: 231 MMTGYVKNDYLDAAREF-----LDGMSENVG----------------------------- 256
           ++ G  +N   D A E      L G+  + G                             
Sbjct: 209 LVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLAN 268

Query: 257 ---VAWNALISGYVHRELKMLMLRIQL---------DEFTYTSVISACANSGLFRLGKQV 304
              V+WN +I+ Y++  +    + I L         D  +  SV+ AC +     LG+++
Sbjct: 269 KSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRI 328

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVS 364
           H Y++R   +P    +L + NAL+ +Y KCG +  AR++F+QM  RD+VSW +++SAY  
Sbjct: 329 HEYVVRKRLQP----NLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAY-- 382

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
                                          NG G + + LFS+M+  G  P   AF   
Sbjct: 383 -----------------------------GMNGKGRDAVSLFSRMQDLGLNPDSIAFVSV 413

Query: 425 ITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NV 482
           +++C+  G L+ GR     +         +     ++ +  R G V+ A      MP   
Sbjct: 414 LSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEP 473

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
           +   W A+++A   + N    +   +Q+ +  + P++  +  +LS
Sbjct: 474 NERVWGALLSACRVYSNMIIGLLAADQLFQ--LCPEQSGYYVLLS 516



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 143/346 (41%), Gaps = 45/346 (13%)

Query: 269 RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL- 327
           ++L+ L+L IQ  +FT  +V+      G          YL +  +K   +  L  N +L 
Sbjct: 15  KQLQTLVLSIQKPKFTQQNVVLTENLCGQILDKNPDIKYLKKLHSKICIDHDLHSNPSLG 74

Query: 328 ---VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
              +  Y  CG+    R IF+++P++                               N++
Sbjct: 75  IKLMRAYAVCGEPWSTRHIFDEIPKK-------------------------------NVV 103

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
            + VMI     N    + L +F  M   G  P  Y +   + + +G   L  G Q+HA +
Sbjct: 104 FFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAV 163

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
           V  G D ++  GN LI+MY +CG +  A  V + MP  D VSWN+++A   ++G    A+
Sbjct: 164 VRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDAL 223

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGL-----VKE-----GRRYFETMHGPYGIPPG 554
           E+ ++M   G+ PD  T  ++L A  +  L     VKE       +   + +    +   
Sbjct: 224 EVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMN 283

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
               A  +D+  +    +   D I      P+     ALL G RIH
Sbjct: 284 NSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIH 329



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 33/128 (25%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R +H +++    +P   + N LID+Y K   L YAR +FD++   D+V+ T++I+AY 
Sbjct: 324 LGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYG 383

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                             N  G  A+ LF  M+   + PD+  F
Sbjct: 384 M---------------------------------NGKGRDAVSLFSRMQDLGLNPDSIAF 410

Query: 153 TSVLSALA 160
            SVLSA +
Sbjct: 411 VSVLSACS 418



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 28/200 (14%)

Query: 438 RQLHAQL-VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           ++LH+++ +     S+ S G  L+  YA CG   +   +F+ +P  + V +N MI +   
Sbjct: 55  KKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVN 114

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACN-----------HAGLVKEGRRYFETM 545
           +   + A+ +++ M   GI PD  T+  VL A +           HA +V+ G       
Sbjct: 115 NHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLD----- 169

Query: 546 HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDL 605
                +  G       I +  + G   EA  V+D +P +     W +L+AGC  +G  D 
Sbjct: 170 ---LNVFVGNG----LISMYGKCGCLVEACRVLDQMPCRDVVS-WNSLVAGCARNGQFDD 221

Query: 606 GIQAAE--QLFQLMPHHAGT 623
            ++  +  +L  L P  AGT
Sbjct: 222 ALEVCKEMELLGLKP-DAGT 240


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 267/710 (37%), Positives = 390/710 (54%), Gaps = 74/710 (10%)

Query: 86  TLIAAYSASDNV-KLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR-- 142
           +L+ A +AS  +   A  +F   P     T  YN ++ A+ H  +   A+ LF +M    
Sbjct: 54  SLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAA 113

Query: 143 DDVKPDNFTFTSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSS 201
                D  T    L + + +   +  + +Q +   VK G      VL++LI +Y  C   
Sbjct: 114 SACPADQHTAACALKSCSRMCALDVGRGVQAY--AVKRGLVADRFVLSSLIHMYASCGD- 170

Query: 202 PFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKN-DYLDAAREFLDGMSENVGVAWN 260
                   + AAR VFD   E   + W  ++  Y+KN D+++   E   GM E VGVA+ 
Sbjct: 171 --------VAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVV-EMFKGMLE-VGVAF- 219

Query: 261 ALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
                               DE T  SV++AC   G  +LGK V  ++         E  
Sbjct: 220 --------------------DEVTLVSVVTACGRIGDAKLGKWVAGHV--------DEEG 251

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           L  N  LVT                           A++  Y   G I +A+ LF+ M+ 
Sbjct: 252 LARNPKLVT---------------------------ALMDMYAKCGEIGKARRLFDGMQS 284

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
           R++++W+ MISG  Q     E L LFS+M+L   +P D      +++CA LGALE G+ +
Sbjct: 285 RDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWV 344

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           H+ +       +   G AL+  YA+CG ++ A   F +MP  +S +W A+I  +  +G G
Sbjct: 345 HSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRG 404

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
             A+EL+  M + GI P  +TF+ VL AC+H+ LV+EGRR+F++M   YGI P  +HY  
Sbjct: 405 REALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGC 464

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
            +DLL RAG   EA   I ++P +P+A IW ALL+ C +H N+ +G +A +Q+  L P H
Sbjct: 465 MVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSH 524

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEA 680
           +G YVLLSN+YA+ G+W DAA VRK M+DRG++K PGCS IE+D  V  F  +D+ HPE 
Sbjct: 525 SGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSDHPEL 584

Query: 681 QAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT 740
           + +Y+ +E+++  ++  GYVP+T  V  ++E  +KE ++S HSEKLA+AFGLMKL  GAT
Sbjct: 585 REIYQKVEEMIGRIKVAGYVPNTADVRLEVEEREKEVSVSHHSEKLAIAFGLMKLDPGAT 644

Query: 741 VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +R+ KNLR+C DCH+A K +SKV  REIVVRD   FHHF+DG CSC DYW
Sbjct: 645 IRLSKNLRVCADCHSATKLISKVYDREIVVRDRNIFHHFKDGTCSCNDYW 694



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 189/433 (43%), Gaps = 75/433 (17%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           ++LI  Y++  +V  AR +F+    +    V +NA++ AY  N +    +E+F+ M    
Sbjct: 159 SSLIHMYASCGDVAAARLVFDAA--EESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVG 216

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           V  D  T  SV++A   I  + K    +   V + G      ++ AL+ +Y KC      
Sbjct: 217 VAFDEVTLVSVVTACGRI-GDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKC------ 269

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                +G ARR+FD M  RD ++W+ M++GY + D     RE L   SE           
Sbjct: 270 ---GEIGKARRLFDGMQSRDVVAWSAMISGYTQADQ---CREALGLFSE----------- 312

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
                   M + R++ ++ T  SV+SACA  G    GK VH+Y+ R         +  + 
Sbjct: 313 --------MQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLS----LTTILG 360

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
            ALV  Y KCG +++A + F  MP ++  +W A++    + G   EA  LF +MRE    
Sbjct: 361 TALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRE---- 416

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
                                       G +P D  F G + +C+    +E GR+    +
Sbjct: 417 ---------------------------AGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSM 449

Query: 445 VHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGAR 502
               G    +     ++ +  R G+V+ A     TMP   ++V W A++++   H N   
Sbjct: 450 ARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRN--- 506

Query: 503 AIELYEQMLKEGI 515
            + + E+ LK+ I
Sbjct: 507 -VGIGEEALKQII 518



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 140/288 (48%), Gaps = 21/288 (7%)

Query: 354 SWNAIL-SAYVSAGLIDEAKSLFEAMRERNLLS---WTVMISGLAQNGYGEEGLKLFSQM 409
           S++++L +A  S  L+  A SLF  +  R  LS   + V++      G+ E+ L LF +M
Sbjct: 51  SFHSLLEAAAASPTLLPYAVSLFR-LGPRPPLSTPCYNVLMRAFLHAGHPEDALHLFIEM 109

Query: 410 RLEGFKPC---DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
            L     C    +  A A+ SC+ + AL+ GR + A  V  G  +     ++LI MYA C
Sbjct: 110 -LHAASACPADQHTAACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASC 168

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G V AA  VF+       V WNA++AA  ++G+    +E+++ ML+ G+  D +T ++V+
Sbjct: 169 GDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVV 228

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
           +AC   G  K G ++        G+          +D+  + G+  +A+ + D +  +  
Sbjct: 229 TACGRIGDAKLG-KWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSR-D 286

Query: 587 APIWEALLAG------CRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628
              W A+++G      CR      LG+ +  QL ++ P+      +LS
Sbjct: 287 VVAWSAMISGYTQADQCREA----LGLFSEMQLARVEPNDVTMVSVLS 330



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 146/343 (42%), Gaps = 45/343 (13%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
            P +V  T L+  Y+    +  AR +F+   ++ RD V ++AMI+ Y+       A+ LF
Sbjct: 255 NPKLV--TALMDMYAKCGEIGKARRLFDG--MQSRDVVAWSAMISGYTQADQCREALGLF 310

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
            +M+   V+P++ T  SVLSA A++   E     +H  V +    L T +  AL+  Y K
Sbjct: 311 SEMQLARVEPNDVTMVSVLSACAVLGALETG-KWVHSYVRRKRLSLTTILGTALVDFYAK 369

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C           +  A   F+ MP ++  +WT ++ G   N     A E    M E    
Sbjct: 370 C---------GCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREA--- 417

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPT 316
                               I+  + T+  V+ AC++S L   G++    + R    KP 
Sbjct: 418 -------------------GIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPR 458

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA---YVSAGLIDEAK 372
            E        +V L  + G V+EA      MP E + V W A+LS+   + + G+ +EA 
Sbjct: 459 VEH----YGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEAL 514

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
               ++   +   + ++ +  A  G  ++   +  +M+  G +
Sbjct: 515 KQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIE 557


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 227/566 (40%), Positives = 340/566 (60%), Gaps = 31/566 (5%)

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA-----------CANSGLFRLGKQV 304
           G+A N+   G V   + ML L I+ D  T   V+ +           C + G+ +LG + 
Sbjct: 112 GLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEF 171

Query: 305 HAY--------------------LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
            ++                    L     +     S+ + N L+    K G +++A  +F
Sbjct: 172 DSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLF 231

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
             MPER+  SWN++++ +V  G +D A+ LF  M E+N++SWT MI+G +QNG  E+ L 
Sbjct: 232 EAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALS 291

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           +F +M  EG +P D     A+ +C  +GAL+ G ++H  L  +G+  +   G AL+ MYA
Sbjct: 292 MFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYA 351

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           +CG +++A+ VF      D ++W+ MI     HG   +A++ + +M   GI PD + FL 
Sbjct: 352 KCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLA 411

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584
           +L+AC+H+G V +G  +FE+M   Y I P   HY   +DLL RAG+  EA   I S+P  
Sbjct: 412 ILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPIN 471

Query: 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVR 644
           P   IW AL   CR H NI++    AE+L QL P H G+YV LSN+YA +GRW+D  RVR
Sbjct: 472 PDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVR 531

Query: 645 KLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTK 704
            LM++RGV+K+PG S+IEV+ +VH F+  D AH  A+ +   LE++    ++ GY+P+T 
Sbjct: 532 TLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETA 591

Query: 705 FVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVV 764
           +VLH++E ++KE AL +HSEKLA+AFGL+    G+T+R++KNLR+CGDCH+  K+ SK+ 
Sbjct: 592 WVLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLS 651

Query: 765 GREIVVRDGKRFHHFRDGKCSCGDYW 790
            REI++RD KRFHHF+DG CSCGDYW
Sbjct: 652 RREIILRDIKRFHHFKDGTCSCGDYW 677



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 118/527 (22%), Positives = 211/527 (40%), Gaps = 109/527 (20%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           +HA +          ++ +LI   C    L YA ++F     P++               
Sbjct: 59  IHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFV------------- 105

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
                               +NA+I   + NS    ++  F  M R  ++PD  T   VL
Sbjct: 106 --------------------FNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVL 145

Query: 157 SALALIVEEE-KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF-----------V 204
            ++A +V+    +C  +H  V+K G    + V  +L+ +YVK     F            
Sbjct: 146 KSVAALVDVGLGRC--LHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRN 203

Query: 205 SSRSL---------------MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD 249
            + S+               +  A  +F+ MPER+  SW +++ G+V+N  LD ARE   
Sbjct: 204 KAESILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFV 263

Query: 250 GMSENVGVAWNALISGYVHRE---------LKMLMLRIQLDEFTYTSVISACANSGLFRL 300
            M E   V+W  +I+G+              +ML   ++ ++ T  S + AC   G  ++
Sbjct: 264 QMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQV 323

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           G+++H YL    +    + +  +  ALV +Y KCG +  A  +F +   +DL++W+    
Sbjct: 324 GERIHNYL----SSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWS---- 375

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
                                      VMI G A +G  ++ L+ F +M+  G  P +  
Sbjct: 376 ---------------------------VMIWGWAIHGCFDQALQCFVKMKSAGINPDEVI 408

Query: 421 FAGAITSCAGLGALENGRQLHAQL-VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
           F   +T+C+  G ++ G      + +    + ++     ++ +  R G ++ A     +M
Sbjct: 409 FLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSM 468

Query: 480 P-NVDSVSWNAMIAALGQHGNGARAIELYEQMLK-EGILPDRITFLT 524
           P N D V W A+  A   H N   A    E++L+ E   P    FL+
Sbjct: 469 PINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLS 515



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 98/244 (40%), Gaps = 40/244 (16%)

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           Q+HAQ+      S+      LI+       ++ A  +F    + +   +NA+I  L ++ 
Sbjct: 58  QIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENS 117

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSA-----------CNHAGLVKEGRRYFETMHG 547
               ++  +  ML+  I PDR+T   VL +           C H G++K G  +      
Sbjct: 118 RFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEF------ 171

Query: 548 PYGIPPGEDHYAR--FIDLLCRAGKFSEAKDVIDSLPFKPSAP---IWEALLAGCRIHGN 602
                   D + R   +D+  + G+      + D  P +  A    +W  L+ GC   G+
Sbjct: 172 --------DSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGD 223

Query: 603 IDLGIQAAEQLFQLMPH-HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWI 661
               +  A  LF+ MP  +AG++  L N +   G  D A  +   M ++ V      SW 
Sbjct: 224 ----LSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNV-----VSWT 274

Query: 662 EVDN 665
            + N
Sbjct: 275 TMIN 278


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 256/720 (35%), Positives = 376/720 (52%), Gaps = 87/720 (12%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D +   +L+  Y  S +++ A ++F+       + V +N M+ AY    +   + ++F  
Sbjct: 278 DYIMEGSLLDLYVKSGDIEEALQIFDSG--DRTNVVLWNLMLVAYGQIDDLAKSFDIFYR 335

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M    V+P+ FT+  +L        E     Q+H   +K+G   F S       +YV  V
Sbjct: 336 MLAAGVRPNKFTYPCMLRTCTH-TGEIGLGEQIHSLTIKNG---FQS------DMYVSGV 385

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                                          ++  Y K  +LD A+  LD + E   V+W
Sbjct: 386 -------------------------------LIDMYSKYGWLDKAQRILDMIEEKDVVSW 414

Query: 260 NALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
            ++I+GYV  E          +M    I  D     S ISACA       G Q+HA    
Sbjct: 415 TSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHA---- 470

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
                            V+ Y                   D+  WN ++  Y   G+  E
Sbjct: 471 --------------RVYVSGY-----------------SADVSIWNGLVYLYARCGISKE 499

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
           A S FEA+  +  ++W  +ISG AQ+G  EE LK+F +M   G K   + F  +I++ A 
Sbjct: 500 AFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASAN 559

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
           L  ++ G+Q+HA+++ +GY S     NALI++Y +CG +E A   F  M   + VSWN +
Sbjct: 560 LADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTI 619

Query: 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
           I    QHG G  A++L++QM ++G+ P  +TF+ VL+AC+H GLV+EG  YF++M   +G
Sbjct: 620 ITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHG 679

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
           I P  DHYA  +D+L RAG+   AK  ++ +P    + +W  LL+ C++H N+++G  AA
Sbjct: 680 IHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAA 739

Query: 611 EQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVF 670
           + L +L PH + +YVLLSN YA  G+W    ++RK+M+DRGV+KEPG SWIEV N VH F
Sbjct: 740 KHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNVVHAF 799

Query: 671 LVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAF 730
            V D  HP A  +Y +L  L   + K+GY  +   + H+ E + K+     HSEKLAVAF
Sbjct: 800 FVGDRLHPLADQIYNFLSHLNDRLYKIGYKQENYHLFHEKEKEGKDPTAFVHSEKLAVAF 859

Query: 731 GLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           GLM LP    +RV+KNLR+C DCH   KF S V+GREIV+RD  RFHHF +G CSCGDYW
Sbjct: 860 GLMSLPSCMPLRVIKNLRVCNDCHTWMKFTSGVMGREIVLRDVYRFHHFNNGSCSCGDYW 919



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 148/606 (24%), Positives = 264/606 (43%), Gaps = 116/606 (19%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           LI  Y+    V+ AR +F +  L +RD V + A+++ Y+ N  G  A+ L+R+M R  V 
Sbjct: 83  LIDLYAKKGFVRRARRVFEE--LSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVV 140

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVS------ 200
           P  +  +S+LSA     E  +    +H  V K G    T V NALIS+Y++C S      
Sbjct: 141 PTPYVLSSILSACTK-TELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADR 199

Query: 201 -------------SPFVSSRSLMGAARR---VFDEM------PE---------------- 222
                        +  +S  +  G   R   +FDEM      P+                
Sbjct: 200 VFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGD 259

Query: 223 ------------RDELSWTTMMTG-----YVKNDYLDAAREFLDGMSENVGVAWNALISG 265
                       +  +S   +M G     YVK+  ++ A +  D       V WN ++  
Sbjct: 260 LRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVA 319

Query: 266 YVHRE---------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
           Y   +          +ML   ++ ++FTY  ++  C ++G   LG+Q+H           
Sbjct: 320 YGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIH----------- 368

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
              SL + N                       + D+     ++  Y   G +D+A+ + +
Sbjct: 369 ---SLTIKNGF---------------------QSDMYVSGVLIDMYSKYGWLDKAQRILD 404

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
            + E++++SWT MI+G  Q+ + +E L+ F +M+  G  P +   A AI++CAG+ A+  
Sbjct: 405 MIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQ 464

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           G Q+HA++  SGY + +S  N L+ +YARCG+ + A   F  + + + ++WN +I+   Q
Sbjct: 465 GSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQ 524

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
            G    A++++ +M + G   +  TF++ +SA  +   +K+G++    +    G     +
Sbjct: 525 SGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKT-GYTSETE 583

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI-WEALLAGCRIHGNIDLGIQAAEQLFQ 615
                I L  + G   +AK  +D         + W  ++  C  HG    G++A + LF 
Sbjct: 584 ISNALISLYGKCGSIEDAK--MDFFEMTKRNEVSWNTIITCCSQHGR---GLEALD-LFD 637

Query: 616 LMPHHA 621
            M    
Sbjct: 638 QMKQQG 643



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 120/487 (24%), Positives = 201/487 (41%), Gaps = 106/487 (21%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y   L+ C     I   L   +H+  I +GF+   ++   LID+Y K   L  A+ + D 
Sbjct: 348 YPCMLRTCTHTGEI--GLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDM 405

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           I + D+V+ T++IA Y   +  K                                  A+E
Sbjct: 406 IEEKDVVSWTSMIAGYVQHEFCK---------------------------------EALE 432

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
            F++M+   + PDN    S +SA A I +   Q  Q+H  V  SG     S+ N L+ +Y
Sbjct: 433 TFKEMQACGIWPDNIGLASAISACAGI-KAVHQGSQIHARVYVSGYSADVSIWNGLVYLY 491

Query: 196 VKC-VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
            +C +S    SS          F+ +  ++ ++W  +++G+ ++   + A +    M + 
Sbjct: 492 ARCGISKEAFSS----------FEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKM-DQ 540

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
            G  +N                      FT+ S ISA AN    + GKQ+HA +++T   
Sbjct: 541 AGAKYNV---------------------FTFVSSISASANLADIKQGKQIHARVIKTGYT 579

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
              E S    NAL++LY KCG + +A+  F +M +R+ VSWN I++     G   EA  L
Sbjct: 580 SETEIS----NALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDL 635

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
           F+ M++                               +G KP D  F G +T+C+ +G +
Sbjct: 636 FDQMKQ-------------------------------QGLKPSDVTFVGVLTACSHVGLV 664

Query: 435 ENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIA 492
           E G      + +  G          ++ +  R G ++ A      MP   DS+ W  +++
Sbjct: 665 EEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLS 724

Query: 493 ALGQHGN 499
           A   H N
Sbjct: 725 ACKVHKN 731



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 132/249 (53%), Gaps = 5/249 (2%)

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           N ++  Y   G +  A+ +FE +  R+ +SW  ++SG AQNG GEE ++L+ +M   G  
Sbjct: 81  NLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVV 140

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P  Y  +  +++C      + GR +H Q+   G+ S    GNALI++Y RC     A+ V
Sbjct: 141 PTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRV 200

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           F  M   DSV++N +I+   Q G+G RA+ ++++M   G+ PD +T  ++L+AC+  G +
Sbjct: 201 FCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDL 260

Query: 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
           ++G++    +    G+          +DL  ++G   EA  + DS   + +  +W  +L 
Sbjct: 261 RKGKQLHSYLLKA-GMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGD-RTNVVLWNLMLV 318

Query: 596 GCRIHGNID 604
               +G ID
Sbjct: 319 A---YGQID 324



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 11/125 (8%)

Query: 421 FAGAITSCAGLGALENGR------QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
           FA A+ +C G     +GR      ++HA+ +  G       GN LI +YA+ G V  A  
Sbjct: 44  FACALRACRG-----SGRRWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARR 98

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
           VF  +   D+VSW A+++   Q+G G  A+ LY +M + G++P      ++LSAC    L
Sbjct: 99  VFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTEL 158

Query: 535 VKEGR 539
            + GR
Sbjct: 159 FQLGR 163


>gi|302791701|ref|XP_002977617.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
 gi|300154987|gb|EFJ21621.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
          Length = 805

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 278/779 (35%), Positives = 404/779 (51%), Gaps = 112/779 (14%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           ++L+  Y    +++ A ++F+K   K    V +  +I+AY    +  AAI LF  + ++ 
Sbjct: 66  SSLVYMYLRCGSLESAIDVFHKIAHK--SIVLWTVLISAYVSRGHSAAAIALFHRILQEG 123

Query: 145 VKPDNFTFTSVLSALALIVEEE--KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSP 202
           +  D   F SVLSA +    EE       +H   V++G GL   V +AL+S+Y +C S  
Sbjct: 124 IALDAIVFVSVLSACS---SEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGS-- 178

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL 262
              + +L G   R  D +       W  M+T   +N     A E                
Sbjct: 179 LRDANALFGHLERHLDVVL------WNAMITANSQNGSPREALEIF-------------- 218

Query: 263 ISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG--KQVHAYLLRTEAKPTPEFS 320
                    +ML L I  D  T+ SV  AC++S   R    K  HA L  T         
Sbjct: 219 --------YRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHACLDETGLGS----D 266

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVS---------------A 365
           + V  ALV  Y +CG+++ AR  F +MPER+ VSW ++++A+                  
Sbjct: 267 VVVATALVNAYARCGEIDCARKFFAEMPERNAVSWTSMIAAFTQIGHLLAVETFHAMLLE 326

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQN---------------GYG----------- 399
           G++    +LF A+     L    ++  +AQ                 Y            
Sbjct: 327 GVVPTRSTLFAALEGCEDLRVARLVEAIAQEIGVVTDVAIVTDLVMAYARCDGQEDAIRV 386

Query: 400 ----EEG----------LKLFSQMR-------------LEGFKPCDYAFAGAITSCAGLG 432
               EEG          + +++Q R               G  P    +  A+ +CA L 
Sbjct: 387 FSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITALDACASLA 446

Query: 433 ALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
           AL  GRQ+HA +      D  ++ GNA+++MY +CG +  A   F+ MP  D +SWNAM+
Sbjct: 447 ALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEISWNAML 506

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
           +A  QHG      +L+  ML+EG   +RI FL +LSAC HAGLVK G  +F  M G +G+
Sbjct: 507 SASAQHGRVEDCCDLFRAMLQEGFDAERIAFLNLLSACAHAGLVKAGCEHFSAMTGDHGV 566

Query: 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611
            P  +HY   +DLL R G+ ++A  ++ ++P  P A  W AL+  CRI+G+ + G  AAE
Sbjct: 567 VPATEHYGCMVDLLGRKGRLADAHGIVQAMPVPPDAATWMALMGACRIYGDTERGRFAAE 626

Query: 612 QLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFL 671
           ++ +L   H   YV L N+Y+  GRWDDAA VRK+M D G++K PG S IE+ +KVH F+
Sbjct: 627 RVLELRADHTAAYVALCNIYSAAGRWDDAAAVRKIMADLGLRKIPGVSSIEIRSKVHEFV 686

Query: 672 VDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFG 731
           V D +HP+++A+Y  LE+++  + + GY   T  VLHD+E +QKE  L  HSEKLA+AFG
Sbjct: 687 VRDRSHPQSEAIYAELERVMGAIERAGYRAVTGEVLHDVEEEQKEQLLRFHSEKLAIAFG 746

Query: 732 LMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +M  P G+T+RV+KNLR+C DCHNA KF+SKV GREIVVRD +RFHHF+DG CSCGDYW
Sbjct: 747 MMSTPQGSTLRVIKNLRVCVDCHNASKFISKVFGREIVVRDVRRFHHFKDGACSCGDYW 805



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 125/308 (40%), Gaps = 45/308 (14%)

Query: 61  CKSLKLVYARTLFDEIPQ-----PDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTV 115
           C+ L++     L + I Q      D+   T L+ AY+  D  + A  +F+       D  
Sbjct: 342 CEDLRVA---RLVEAIAQEIGVVTDVAIVTDLVMAYARCDGQEDAIRVFSAREEGEWDAA 398

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMH-C 174
              AMI  Y+   +  +  +L+       + PD   + + L A A +    +   Q+H C
Sbjct: 399 LVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITALDACASLAALSEG-RQIHAC 457

Query: 175 TVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTG 234
                      ++ NA++S+Y +C S         +  AR  FD MP RDE+SW  M++ 
Sbjct: 458 VAADRRLDRDVTLGNAIVSMYGQCGS---------LRDARDAFDGMPARDEISWNAMLSA 508

Query: 235 YVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACAN 294
             ++  ++   +    M          L  G+              +   + +++SACA+
Sbjct: 509 SAQHGRVEDCCDLFRAM----------LQEGF------------DAERIAFLNLLSACAH 546

Query: 295 SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLV 353
           +GL + G + H   +  +    P  +      +V L  + G++ +A  I   MP   D  
Sbjct: 547 AGLVKAGCE-HFSAMTGDHGVVP--ATEHYGCMVDLLGRKGRLADAHGIVQAMPVPPDAA 603

Query: 354 SWNAILSA 361
           +W A++ A
Sbjct: 604 TWMALMGA 611


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 273/763 (35%), Positives = 395/763 (51%), Gaps = 108/763 (14%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
           S+  R +HA  ++SGF     + + L  +Y    +   AR +FD +P PD          
Sbjct: 139 SAALRPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPD---------- 188

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMR-RDDVKPDN 149
                                  TV +N ++   S    G  A+E F  M     V+PD+
Sbjct: 189 -----------------------TVLWNTLLAGLS----GSEALEAFVRMAGAGSVRPDS 221

Query: 150 FTFTSVLSALALIVEEE-KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
            T  SVL A A +      +C+  H    K G      V+  LIS+Y KC          
Sbjct: 222 TTLASVLPAAAEVANTTMGRCV--HAFGEKCGLAQHEHVVTGLISLYAKCGD-------- 271

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
            M  AR +FD M   D +++  +++GY  N  + ++ E                      
Sbjct: 272 -MECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELF-------------------- 310

Query: 269 RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALV 328
           +EL  + LR      T  ++I   +  G   L   +HA+++    K   + + PV+ AL 
Sbjct: 311 KELVGMGLRPS--SSTLVALIPVHSPFGHEPLAGCLHAHVV----KAGLDANAPVSTALT 364

Query: 329 TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV 388
           TLY +          FN M                     D A+  F+AM E+ + SW  
Sbjct: 365 TLYCR----------FNDM---------------------DSARRAFDAMPEKTMESWNA 393

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG 448
           MISG AQNG  E  + LF QM+    +P     + A+++CA LGAL  G+ +H  + +  
Sbjct: 394 MISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANEK 453

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
            + ++    ALI MY +CG +  A C+F++M N + VSWN MI+  G HG GA A++LY+
Sbjct: 454 LELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYK 513

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568
            M+   + P   TFL+VL AC+H GLVKEG   F +M   YGI PG +H    +DLL RA
Sbjct: 514 DMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRA 573

Query: 569 GKFSEAKDVIDSLPFKPSAP-IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627
           G+  EA ++I   P     P IW ALL  C +H + DL   A+++LF+L P + G YVLL
Sbjct: 574 GQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLFELEPENTGYYVLL 633

Query: 628 SNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYL 687
           SN+Y +  ++ +AA VR+  + R + K PGC+ IE+ ++ HVF+  D AHP++ A+Y YL
Sbjct: 634 SNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHVFMAGDRAHPQSDAIYLYL 693

Query: 688 EQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNL 747
           E+L  +M + GY PDT+  L+D+E ++KE+ +  HSEKLA+AFGL+    G  +R++KNL
Sbjct: 694 EKLTAKMIEAGYRPDTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLNTEPGTEIRIIKNL 753

Query: 748 RICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           R+C DCHNA K +SKV  R IVVRD  RFHHFRDG CSCGDYW
Sbjct: 754 RVCLDCHNATKIISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 796


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 269/800 (33%), Positives = 412/800 (51%), Gaps = 121/800 (15%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y+S LQLC     +T    + VH+ + S+     E +  +L+ +Y     L   R +FD 
Sbjct: 102 YSSVLQLCAGSKSLTD--GKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDT 159

Query: 76  IPQPDIVARTTLIAAYSASDNVK--------------------LAREMFNKTPLKMRDTV 115
           + + ++     +++ Y+   + K                     A E+F+K  L  RD +
Sbjct: 160 MEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDK--LCDRDVI 217

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA----LIVEEEKQCMQ 171
            +N+MI+ Y  N      +E+++ M    +  D  T  SVL   A    L + +      
Sbjct: 218 SWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGK-----A 272

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H   +KS      +  N L+ +Y KC           +  A RVF++M ER+ +SWT+M
Sbjct: 273 VHSLAIKSTFERRINFSNTLLDMYSKCGD---------LDGALRVFEKMGERNVVSWTSM 323

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           + GY ++   D A   L  M E  GV                     +LD    TS++ A
Sbjct: 324 IAGYTRDGRSDGAIRLLQQM-EKEGV---------------------KLDVVATTSILHA 361

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           CA SG    GK VH Y+               NN                       E +
Sbjct: 362 CARSGSLDNGKDVHDYI-------------KANNM----------------------ESN 386

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
           L   NA++  Y   G +D A S+F  M  ++++SW  MI  L                  
Sbjct: 387 LFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGEL------------------ 428

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
              KP     A  + +CA L ALE G+++H  ++ +GY S     NAL+ +Y +CGV+  
Sbjct: 429 ---KPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGL 485

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
           A  +F+ +P+ D VSW  MI+  G HG G  AI  + +M   GI PD ++F+++L AC+H
Sbjct: 486 ARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSH 545

Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
           +GL+++G R+F  M   + I P  +HYA  +DLL R G  S+A + I++LP  P A IW 
Sbjct: 546 SGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWG 605

Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
           ALL GCRI+ +I+L  + AE++F+L P + G YVLL+N+YA   +W++  R+R+ +  +G
Sbjct: 606 ALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKG 665

Query: 652 VKKEPGCSWIEVDNKVHVFLV-DDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDM 710
           ++K PGCSWIE+  KV++F+  ++++HP ++ +   L+++  +M++ GY P TK+ L + 
Sbjct: 666 LRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINA 725

Query: 711 ESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVV 770
           +  QKE AL  HSEKLA+AFGL+ LP   TVRV KNLR+CGDCH   KFMSK   REIV+
Sbjct: 726 DEMQKEMALCGHSEKLAMAFGLLALPPRKTVRVTKNLRVCGDCHEMAKFMSKETRREIVL 785

Query: 771 RDGKRFHHFRDGKCSCGDYW 790
           RD  RFHHF++G CSC  +W
Sbjct: 786 RDSNRFHHFKNGYCSCRGFW 805



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 146/531 (27%), Positives = 233/531 (43%), Gaps = 111/531 (20%)

Query: 107 TPLKM--RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE 164
           TP +   R    YNA I  +    N   A+EL    ++ +++   ++    L A +  + 
Sbjct: 57  TPTRTIDRQVTDYNAKILHFCQLGNLENAMELVCMCQKSELETKTYSSVLQLCAGSKSLT 116

Query: 165 EEKQCMQMHCTVVKSGTGLFTSVLN-ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER 223
           + K+   +H +++KS       VL   L+S+Y  C           +   RRVFD M ++
Sbjct: 117 DGKK---VH-SIIKSNNVAVDEVLGLKLVSLYATCGD---------LKEGRRVFDTMEKK 163

Query: 224 DELSWTTMMTGYVK-NDYLDA-------------------AREFLDGMSENVGVAWNALI 263
           +   W  M++ Y K  D+ ++                   A E  D + +   ++WN++I
Sbjct: 164 NVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMI 223

Query: 264 SGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
           SGYV   L         +M+ L I +D  T  SV+  CANSG   LGK VH+  +    K
Sbjct: 224 SGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAI----K 279

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
            T E  +  +N L+ +Y KCG                                +D A  +
Sbjct: 280 STFERRINFSNTLLDMYSKCGD-------------------------------LDGALRV 308

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
           FE M ERN++SWT MI+G  ++G  +  ++L  QM  EG K    A    + +CA  G+L
Sbjct: 309 FEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSL 368

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
           +NG+ +H  +  +  +S+L   NAL+ MY +CG ++ AN VF+TM   D +SWN MI  L
Sbjct: 369 DNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGEL 428

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
                                 PD  T   +L AC     ++ G+     +HG Y +  G
Sbjct: 429 K---------------------PDSRTMACILPACASLSALERGKE----IHG-YILRNG 462

Query: 555 ---EDHYAR-FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
              + H A   +DL  + G    A+ + D +P K     W  +++G  +HG
Sbjct: 463 YSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVS-WTVMISGYGMHG 512


>gi|357121739|ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 770

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 259/715 (36%), Positives = 391/715 (54%), Gaps = 65/715 (9%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           DI   T+L+  Y    N + AR +F++ P K  + V + A+IT Y+ NS    A+E+F +
Sbjct: 112 DIFVATSLVNVYMRCGNSQDARNLFDEMPEK--NVVTWTALITGYTLNSQPVLALEVFVE 169

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M +    P ++T   +LSA  +         Q+H   +K G    TS+ N+L  +Y K  
Sbjct: 170 MLKLGRYPSDYTLGGMLSA-CVASHNIDLGKQVHGYTIKYGAASITSIGNSLCRLYTKSG 228

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND-YLDAAREFLDGMSENVGVA 258
           +         + +  R F  +P+++ ++WTTM++   +++ Y +                
Sbjct: 229 N---------LESGIRAFKRIPDKNVITWTTMISACAEDENYTELGLNLF---------- 269

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                       L ML   +  +EFT TSV+S C  S    LGKQV  +  +        
Sbjct: 270 ------------LDMLKGEVMPNEFTLTSVMSLCGTSLDMNLGKQVQGFCFKIGCAT--- 314

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
            +LPV N+ + LY + G+  EA  +F +M +  +++WNA++S +  A ++D AK    A 
Sbjct: 315 -NLPVKNSTMYLYLRKGETEEAMRLFEEMEDNSVITWNAMISGF--AQIMDSAKDDLHA- 370

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
           R R                 G + LK+F  +     KP  + F+  ++ C+ + ALE G 
Sbjct: 371 RSR-----------------GFQALKIFRDLVRSAMKPDLFTFSSILSVCSTMMALEQGE 413

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           Q+HAQ + +G+ S +   +AL+ MY +CG +E A   F  MP    V+W +MI+   QHG
Sbjct: 414 QIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEYATKAFVEMPTRTLVTWTSMISGYSQHG 473

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
               AI+L+E M+  G  P+ ITF+++LSAC++AGLV+E  RYF+ M   Y I P  DHY
Sbjct: 474 RPHDAIQLFEDMILAGAKPNEITFVSLLSACSYAGLVEEAMRYFDMMQNEYHIEPLMDHY 533

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
              ID+  R G+  +A   I    F+P+  IW +L+AGCR HGN++L   AA++L +L P
Sbjct: 534 GCMIDMFVRLGRLDDAYAFIKRKGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLELKP 593

Query: 619 HHAGTYVLLSNMYANLGRWDDAARVRKLMR--DRGVKKEPGCSWIEVDNKVHVFLVDDTA 676
               TYVLL NMY + GRW D ARVRKL +  D G+ ++   SWI + +KV+ F  DD +
Sbjct: 594 KVVETYVLLLNMYISTGRWRDVARVRKLSKHEDLGILRDR--SWITIRDKVYFFKADDRS 651

Query: 677 HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYA--LSTHSEKLAVAFGLMK 734
           HP++  +Y+ LE L+ + + +GY P     L+D E D K  A  L  HSE+LAVA GL+K
Sbjct: 652 HPQSTELYQLLETLLEKAKAIGYEPYQNTELYDSEEDGKPAAGSLKHHSERLAVALGLLK 711

Query: 735 LPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
            P G TVR+ KN+ +C DCH++ KF S +  REIVVRD KR H F+DG+CSCGD+
Sbjct: 712 APPGVTVRITKNITMCRDCHSSIKFFSLLANREIVVRDSKRLHKFKDGRCSCGDF 766



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 10/174 (5%)

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
           C   G+L   + LH  +V +G    +    +L+ +Y RCG  + A  +F+ MP  + V+W
Sbjct: 88  CIETGSLGGAKALHGHMVKTGTIVDIFVATSLVNVYMRCGNSQDARNLFDEMPEKNVVTW 147

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
            A+I     +     A+E++ +MLK G  P   T   +LSAC  +  +  G++    +HG
Sbjct: 148 TALITGYTLNSQPVLALEVFVEMLKLGRYPSDYTLGGMLSACVASHNIDLGKQ----VHG 203

Query: 548 PYGIPPGEDHYARFIDLLCR----AGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
            Y I  G        + LCR    +G           +P K +   W  +++ C
Sbjct: 204 -YTIKYGAASITSIGNSLCRLYTKSGNLESGIRAFKRIPDK-NVITWTTMISAC 255


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 251/720 (34%), Positives = 380/720 (52%), Gaps = 87/720 (12%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D +   +L+  Y    +++ A ++FN       + V +N M+ AY   S+   + E+F  
Sbjct: 279 DYITEGSLLDLYVKCGDIETAHDIFNLG--DRTNVVLWNLMLVAYGQISDLAKSFEIFGQ 336

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M+   + P+ FT+  +L       + E    Q+H   +K+G   F S       +YV  V
Sbjct: 337 MQATGIHPNKFTYPCILRTCTCTGQIELG-EQIHSLSIKNG---FES------DMYVSGV 386

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                                          ++  Y K   LD AR+ L+ + +   V+W
Sbjct: 387 -------------------------------LIDMYSKYRCLDKARKILEMLEKRDVVSW 415

Query: 260 NALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
            ++I+GYV  +          +M    +  D     S  SACA     R G Q+HA    
Sbjct: 416 TSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHA---- 471

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
                                           ++      D+  WN +++ Y   G  +E
Sbjct: 472 -------------------------------RVYVSGYAADISIWNTLVNLYARCGRSEE 500

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
           A SLF  +  ++ ++W  +ISG  Q+   E+ L +F +M   G K   + F  AI++ A 
Sbjct: 501 AFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALAN 560

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
           L  ++ G+Q+H + V +G+ S     NALI++Y +CG +E A  +F+ M   + VSWN +
Sbjct: 561 LADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTI 620

Query: 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
           I +  QHG G  A++L++QM +EG+ P+ +TF+ VL+AC+H GLV+EG  YF++M   YG
Sbjct: 621 ITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYG 680

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
           + P  DHYA  +D+L RAG+   A+  +D +P   +A IW  LL+ C++H NI++G  AA
Sbjct: 681 LNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAA 740

Query: 611 EQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVF 670
           + L +L PH + +YVLLSN YA  G+W +  +VRK+M+DRG++KEPG SWIEV N VH F
Sbjct: 741 KHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAF 800

Query: 671 LVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAF 730
            V D  HP +  +YK+L +L   + K+GY  +   + H+ E +QK+     HSEKLAVAF
Sbjct: 801 FVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAF 860

Query: 731 GLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           GLM LP    +RV+KNLR+C DCH+  KF S+V  REIV+RD  RFHHF  G CSCGDYW
Sbjct: 861 GLMTLPPCIPLRVIKNLRVCDDCHSWMKFTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  162 bits (410), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 134/510 (26%), Positives = 221/510 (43%), Gaps = 71/510 (13%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           LI  Y+ +  V  AR++F +  L  RD V + AM++ Y+    G  A  L+  M    V 
Sbjct: 84  LIDLYAKNGLVWQARQVFKE--LSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVI 141

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           P  +  +SVLSA     +   Q   +H  V K      T V NALI++Y+   S      
Sbjct: 142 PTPYVLSSVLSACTK-GKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKL--- 197

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
                 A RVF +M   D +++ T+++G+ +  + + A +  D M           +SG 
Sbjct: 198 ------AERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQ----------LSG- 240

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                      ++ D  T  S+++ACA+ G  + GKQ+H+YLL    K    F      +
Sbjct: 241 -----------LRPDCVTVASLLAACASVGDLQKGKQLHSYLL----KAGMSFDYITEGS 285

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           L+ LY KCG +  A DIFN     ++V WN +L AY   G I +    FE          
Sbjct: 286 LLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAY---GQISDLAKSFE---------- 332

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
                             +F QM+  G  P  + +   + +C   G +E G Q+H+  + 
Sbjct: 333 ------------------IFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIK 374

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
           +G++S +     LI MY++   ++ A  +   +   D VSW +MIA   QH     A+  
Sbjct: 375 NGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALAT 434

Query: 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
           +++M   G+ PD I   +  SAC     +++G +    ++   G       +   ++L  
Sbjct: 435 FKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVS-GYAADISIWNTLVNLYA 493

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           R G+  EA  +   +  K     W  L++G
Sbjct: 494 RCGRSEEAFSLFREIDHKDEIT-WNGLISG 522



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 139/514 (27%), Positives = 216/514 (42%), Gaps = 118/514 (22%)

Query: 170 MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWT 229
           +++H T V  G G    + N LI +Y K           L+  AR+VF E+  RD +SW 
Sbjct: 63  LEIHATSVVRGLGADRLIGNLLIDLYAK---------NGLVWQARQVFKELSSRDHVSWV 113

Query: 230 TMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVI 289
            M++GY +      A      M       W A+I                   +  +SV+
Sbjct: 114 AMLSGYAQRGLGKEAFRLYSQMH------WTAVIP----------------TPYVLSSVL 151

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
           SAC    LF  G+ +HA + + +A  +  F   V NAL+ LY   G    A  +F  M  
Sbjct: 152 SACTKGKLFAQGRMIHAQVYK-QAFCSETF---VGNALIALYLGFGSFKLAERVFCDMLF 207

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
            D V++N +                               ISG AQ G+GE  L++F +M
Sbjct: 208 CDRVTFNTL-------------------------------ISGHAQCGHGECALQIFDEM 236

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
           +L G +P     A  + +CA +G L+ G+QLH+ L+ +G         +L+ +Y +CG +
Sbjct: 237 QLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDI 296

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           E A+ +FN     + V WN M+ A GQ  + A++ E++ QM   GI P++ T+  +L  C
Sbjct: 297 ETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTC 356

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPG--EDHYAR--FIDLLCRAGKFSEAKDVIDSLPFKP 585
              G ++ G    E +H    I  G   D Y     ID+  +     +A+ +++ L  K 
Sbjct: 357 TCTGQIELG----EQIH-SLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLE-KR 410

Query: 586 SAPIWEALLAGCRIH--------------------GNIDL--------GIQAAEQLFQLM 617
               W +++AG   H                     NI L        GI+A  Q  Q+ 
Sbjct: 411 DVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQI- 469

Query: 618 PHHAGTYV-----------LLSNMYANLGRWDDA 640
             HA  YV            L N+YA  GR ++A
Sbjct: 470 --HARVYVSGYAADISIWNTLVNLYARCGRSEEA 501



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 124/486 (25%), Positives = 206/486 (42%), Gaps = 104/486 (21%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y   L+ C     I   L   +H+  I +GF+   ++   LID+Y K   L  AR + + 
Sbjct: 349 YPCILRTCTCTGQI--ELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEM 406

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           + + D+V+ T++IA Y   D  +                                  A+ 
Sbjct: 407 LEKRDVVSWTSMIAGYVQHDFCE---------------------------------EALA 433

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
            F++M+   V PDN    S  SA A I +  +Q +Q+H  V  SG     S+ N L+++Y
Sbjct: 434 TFKEMQDCGVWPDNIGLASAASACAGI-KAMRQGLQIHARVYVSGYAADISIWNTLVNLY 492

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            +C  S           A  +F E+  +DE++W  +++G+ ++   + A      MS+  
Sbjct: 493 ARCGRSE---------EAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQ-A 542

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           G  +N                      FT+ S ISA AN    + GKQVH   ++T    
Sbjct: 543 GAKYNV---------------------FTFISAISALANLADIKQGKQVHGRAVKTGHTS 581

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
             E    V NAL++LY KCG + +A+ IF++M  R+ VSWN I+++              
Sbjct: 582 ETE----VANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITS-------------- 623

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
                             +Q+G G E L LF QM+ EG KP D  F G + +C+ +G +E
Sbjct: 624 -----------------CSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVE 666

Query: 436 NGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAA 493
            G      + +  G +        ++ +  R G ++ A    + MP   +++ W  +++A
Sbjct: 667 EGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSA 726

Query: 494 LGQHGN 499
              H N
Sbjct: 727 CKVHKN 732


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 257/707 (36%), Positives = 383/707 (54%), Gaps = 72/707 (10%)

Query: 85   TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
             +LIA Y  S  V  A ++F++  L  RD V +N+MI+    N   H+A+E F  M    
Sbjct: 592  NSLIATYFKSGEVDSAHKLFDE--LGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILR 649

Query: 145  VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
            V  D  T  + ++A A  V        +H   VK+         N L+ +Y KC +    
Sbjct: 650  VGVDLATLVNSVAACA-NVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGN---- 704

Query: 205  SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND-YLDAAREFLDGMSENVGVAWNALI 263
                 +  A + F++M ++  +SWT+++  YV+   Y DA R F +  S+ V        
Sbjct: 705  -----LNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGV-------- 751

Query: 264  SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
                             D ++ TSV+ ACA       G+ VH Y+     K      LPV
Sbjct: 752  ---------------SPDVYSMTSVLHACACGNSLDKGRDVHNYI----RKNNMALCLPV 792

Query: 324  NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
            +NAL+ +                               Y   G ++EA  +F  +  +++
Sbjct: 793  SNALMDM-------------------------------YAKCGSMEEAYLVFSQIPVKDI 821

Query: 384  LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
            +SW  MI G ++N    E LKLF++M+ E  +P     A  + +C  L ALE GR +H  
Sbjct: 822  VSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGC 880

Query: 444  LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
            ++ +GY S L   NALI MY +CG +  A  +F+ +P  D ++W  MI+  G HG G  A
Sbjct: 881  ILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEA 940

Query: 504  IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563
            I  +++M   GI PD ITF ++L AC+H+GL+ EG  +F +M     + P  +HYA  +D
Sbjct: 941  IATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVD 1000

Query: 564  LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623
            LL R G  S+A ++I+++P KP A IW ALL GCRIH +++L  + AE +F+L P +AG 
Sbjct: 1001 LLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGY 1060

Query: 624  YVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAV 683
            YVLL+N+YA   +W++  ++R+ +  RG+KK PGCSWIEV  K   F+  DTAHP+A+++
Sbjct: 1061 YVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSI 1120

Query: 684  YKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRV 743
            +  L  L ++M+  G+ P  ++ L +    +KE AL  HSEKLA+AFG++ LP G T+RV
Sbjct: 1121 FSLLNNLRIKMKNEGHSPKMRYALINAGDMEKEVALCGHSEKLAMAFGILNLPSGRTIRV 1180

Query: 744  LKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             KNLR+C DCH   KFMSK   REI++RD  RFHHF+DG CSC D+W
Sbjct: 1181 AKNLRVCDDCHEMAKFMSKTTRREIILRDSNRFHHFKDGFCSCRDFW 1227



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 162/592 (27%), Positives = 269/592 (45%), Gaps = 112/592 (18%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIIN-RLIDIYCKSLKLVYARTL 72
           N Y+S LQLC     +     + VH+ +ISS   P E ++  +L+ +Y     L   R +
Sbjct: 452 NAYSSILQLCAEHKCLQE--GKMVHS-VISSNGIPIEGVLGAKLVFMYVSCGALREGRRI 508

Query: 73  FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
           FD I                 SDN                    +N M++ Y+   +   
Sbjct: 509 FDHI----------------LSDN----------------KVFLWNLMMSEYAKIGDYRE 536

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           +I LF+ M++  +  +++TF+ +L   A +     +C ++H  V K G G + +V+N+LI
Sbjct: 537 SIYLFKKMQKLGITGNSYTFSCILKCFATL-GRVGECKRIHGCVYKLGFGSYNTVVNSLI 595

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
           + Y K            + +A ++FDE+ +RD +SW +M++G V N +  +A EF     
Sbjct: 596 ATYFK---------SGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFF---- 642

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
                             ++ML+LR+ +D  T  + ++ACAN G   LG+ +H       
Sbjct: 643 ------------------VQMLILRVGVDLATLVNSVAACANVGSLSLGRALHG----QG 680

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
            K      +  NN L+ +Y KCG +N+A   F +M ++ +VSW ++++AYV  GL D+A 
Sbjct: 681 VKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDA- 739

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
                                         ++LF +M  +G  P  Y+    + +CA   
Sbjct: 740 ------------------------------IRLFYEMESKGVSPDVYSMTSVLHACACGN 769

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
           +L+ GR +H  +  +     L   NAL+ MYA+CG +E A  VF+ +P  D VSWN MI 
Sbjct: 770 SLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIG 829

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY--G 550
              ++     A++L+ +M KE   PD IT   +L AC     ++ GR     +HG     
Sbjct: 830 GYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGR----GIHGCILRN 884

Query: 551 IPPGEDHYAR-FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
               E H A   ID+  + G    A+ + D +P K     W  +++GC +HG
Sbjct: 885 GYSSELHVANALIDMYVKCGSLVHARLLFDMIPEK-DLITWTVMISGCGMHG 935



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 122/498 (24%), Positives = 203/498 (40%), Gaps = 105/498 (21%)

Query: 32   SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
            SL R++H   + + F       N L+D+Y K   L  A   F+++ Q  +V+ T+LIAAY
Sbjct: 671  SLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAY 730

Query: 92   SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                               +R+ ++ +              AI LF +M    V PD ++
Sbjct: 731  -------------------VREGLYDD--------------AIRLFYEMESKGVSPDVYS 757

Query: 152  FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             TSVL A A     +K    +H  + K+   L   V NAL+ +Y KC S         M 
Sbjct: 758  MTSVLHACACGNSLDKG-RDVHNYIRKNNMALCLPVSNALMDMYAKCGS---------ME 807

Query: 212  AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
             A  VF ++P +D +SW TM+ GY KN   + A +    M +                  
Sbjct: 808  EAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES---------------- 851

Query: 272  KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                   + D  T   ++ AC +     +G+ +H  +LR          L V NAL+ +Y
Sbjct: 852  -------RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSS----ELHVANALIDMY 900

Query: 332  WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
             KCG +  AR +F+ +PE+DL++W  ++S     GL +EA                    
Sbjct: 901  VKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEA-------------------- 940

Query: 392  GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV-HSGYD 450
                       +  F +MR+ G KP +  F   + +C+  G L  G      ++     +
Sbjct: 941  -----------IATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNME 989

Query: 451  SSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQ 509
              L     ++ + AR G +  A  +  TMP   D+  W A++     H +   A ++ E 
Sbjct: 990  PKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEH 1049

Query: 510  MLKEGILPDRITFLTVLS 527
            + +  + PD   +  +L+
Sbjct: 1050 VFE--LEPDNAGYYVLLA 1065



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 144/331 (43%), Gaps = 46/331 (13%)

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
           EL  +  + +LD   Y+S++  CA     + GK VH+ ++ +   P       +   LV 
Sbjct: 439 ELLRMSQKSELDLNAYSSILQLCAEHKCLQEGKMVHS-VISSNGIPIEGV---LGAKLVF 494

Query: 330 LYWKCGKVNEARDIFNQ-MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV 388
           +Y  CG + E R IF+  + +  +  WN ++S Y                          
Sbjct: 495 MYVSCGALREGRRIFDHILSDNKVFLWNLMMSEY-------------------------- 528

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG 448
                A+ G   E + LF +M+  G     Y F+  +   A LG +   +++H  +   G
Sbjct: 529 -----AKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLG 583

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
           + S  +  N+LI  Y + G V++A+ +F+ + + D VSWN+MI+    +G    A+E + 
Sbjct: 584 FGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFV 643

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF----IDL 564
           QML   +  D  T +  ++AC + G +  GR     +HG  G+         F    +D+
Sbjct: 644 QMLILRVGVDLATLVNSVAACANVGSLSLGR----ALHGQ-GVKACFSREVMFNNTLLDM 698

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
             + G  ++A    + +  K     W +L+A
Sbjct: 699 YSKCGNLNDAIQAFEKMGQKTVVS-WTSLIA 728


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 255/682 (37%), Positives = 383/682 (56%), Gaps = 63/682 (9%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           R VHA ++ + F     I NRLID+Y K   L  AR LFD +PQ +     +LI+  + S
Sbjct: 35  RLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKS 94

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
             +  A  +F   P    D   +N+M++ ++ +     ++E F  M R+D   + ++F S
Sbjct: 95  GFLDEAARLFGSMPEP--DQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGS 152

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
            LSA A ++ +     Q+H  V KS       + +ALI +Y KC S         +  A 
Sbjct: 153 ALSACAGLM-DLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGS---------VACAE 202

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
            VF  M ER+ ++W +++T Y +N     A E                        ++M+
Sbjct: 203 EVFSGMIERNLVTWNSLITCYEQNGPASEALEVF----------------------VRMM 240

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
              ++ DE T  SV+SACA+    + G Q+HA +++T         L + NALV +Y KC
Sbjct: 241 DSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRD---DLVLGNALVDMYAKC 297

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
            KVNEAR +F++M  R++VS  +++S Y  A  +  A+ +F  M +RN++SW  +I+G  
Sbjct: 298 SKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYT 357

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
           QNG  EE L+LF  ++ E   P  Y F   +                         S + 
Sbjct: 358 QNGENEEALRLFRLLKRESIWPTHYTFGNLLK------------------------SDIF 393

Query: 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
            GN+LI MY +CG +E  + VF  M   D VSWNA+I    Q+G GA A++++ +ML  G
Sbjct: 394 VGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCG 453

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
             PD +T + VL AC+HAGLV+EGR YF +M   +G+ P +DHY   +DLL RAG  +EA
Sbjct: 454 EKPDHVTMIGVLCACSHAGLVEEGRHYFFSME-EHGLIPLKDHYTCMVDLLGRAGCLNEA 512

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL 634
           K++I+++P  P A +W +LLA C++HGNI++G  AAE+L ++ P ++G YVLLSNMYA L
Sbjct: 513 KNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAEL 572

Query: 635 GRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEM 694
           GRW D  RVRKLMR +GV K+PGCSWIEV+++VHVFLV D +HP  + +Y  L+ L  +M
Sbjct: 573 GRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQM 632

Query: 695 RKLGYVPDTK-FVLHDMESDQK 715
           +++GY+PD   F  +D +S  +
Sbjct: 633 KRVGYIPDANDFEAYDEQSKSE 654



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 131/483 (27%), Positives = 205/483 (42%), Gaps = 95/483 (19%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           ++   VHA +  S +    ++ + LID+Y K   +  A  +F  + + ++V         
Sbjct: 164 NMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVT-------- 215

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                                    +N++IT Y  N     A+E+F  M    ++PD  T
Sbjct: 216 -------------------------WNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVT 250

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL-NALISVYVKCVSSPFVSSRSLM 210
             SV+SA A +    K+ +Q+H  VVK+       VL NAL+ +Y KC         S +
Sbjct: 251 LASVVSACASLC-ALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKC---------SKV 300

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
             ARRVFD M  R+ +S T+M++GY +   + AAR     M++   V+WNALI+GY    
Sbjct: 301 NEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNG 360

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
                LR                   LFRL K+   +          +  + V N+L+ +
Sbjct: 361 ENEEALR-------------------LFRLLKRESIWPTHYTFGNLLKSDIFVGNSLIDM 401

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y KCG + +   +F +M ERD VSWNAI+  Y                            
Sbjct: 402 YMKCGSIEDGSRVFEKMKERDCVSWNAIIVGY---------------------------- 433

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
              AQNGYG E L++F +M + G KP      G + +C+  G +E GR     +   G  
Sbjct: 434 ---AQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLI 490

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQ 509
                   ++ +  R G +  A  +   MP N D+V W +++AA   HGN        E+
Sbjct: 491 PLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEK 550

Query: 510 MLK 512
           +L+
Sbjct: 551 LLE 553



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 122/478 (25%), Positives = 208/478 (43%), Gaps = 100/478 (20%)

Query: 11  TLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHII--NRLIDIYCKSLKLVY 68
           TLA+  ++   LC  +  +       +HA ++ +  K R+ ++  N L+D+Y K  K+  
Sbjct: 250 TLASVVSACASLCALKEGL------QIHARVVKTN-KFRDDLVLGNALVDMYAKCSKVNE 302

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           AR +FD +   ++V+ T++++ Y+ + +VK AR MF+K  +  R+ V +NA+I  Y+ N 
Sbjct: 303 ARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSK--MTQRNVVSWNALIAGYTQNG 360

Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL 188
               A+ LFR ++R+ + P ++TF ++L                        + +F  V 
Sbjct: 361 ENEEALRLFRLLKRESIWPTHYTFGNLLK-----------------------SDIF--VG 395

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           N+LI +Y+KC S         +    RVF++M ERD +SW  ++ GY +N Y   A +  
Sbjct: 396 NSLIDMYMKCGS---------IEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIF 446

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
                                  KML+   + D  T   V+ AC+++GL   G+    Y 
Sbjct: 447 R----------------------KMLVCGEKPDHVTMIGVLCACSHAGLVEEGRH---YF 481

Query: 309 LRTEAKPTPEFSLPVNN---ALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVS 364
              E        +P+ +    +V L  + G +NEA+++   MP   D V W ++L+A   
Sbjct: 482 FSMEEHGL----IPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKV 537

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG-----LKLFSQMRLEGFKPCDY 419
            G I+  K   E + E +   W      L  N Y E G     +++   MR +G      
Sbjct: 538 HGNIEMGKHAAEKLLEID--PWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQG------ 589

Query: 420 AFAGAITSCAGLGALENGRQLHAQLV----HSGYDSSLSAGNALITMYARCGVVEAAN 473
                +T   G   +E   ++H  LV    H       S    L     R G +  AN
Sbjct: 590 -----VTKQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMKRVGYIPDAN 642



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 65/133 (48%), Gaps = 4/133 (3%)

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473
           + P    FA  + SC    +    R +HA+++ + +   +   N LI +Y +C  ++ A 
Sbjct: 11  YLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDAR 70

Query: 474 CVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533
            +F+ MP  ++ +WN++I+ L + G    A  L+  M +    PD+ ++ +++S      
Sbjct: 71  KLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPE----PDQCSWNSMVSGFAQHD 126

Query: 534 LVKEGRRYFETMH 546
             +E   YF  MH
Sbjct: 127 RFEESLEYFVKMH 139


>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
          Length = 730

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 256/692 (36%), Positives = 384/692 (55%), Gaps = 59/692 (8%)

Query: 100 AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL 159
           AR +F+  P   R+ V + A++T Y+ NS     +E+F +M      P ++T  + L+A 
Sbjct: 92  ARRLFDGMP--ERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNA- 148

Query: 160 ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDE 219
            L   +     Q+H   +K G    TS+ N+L S+Y K  S         + +A R F  
Sbjct: 149 CLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGS---------LDSALRAFWR 199

Query: 220 MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQ 279
           +PE++ ++WTTM++   +++             E V +  +  I         MLM  + 
Sbjct: 200 IPEKNVITWTTMISACAEDE-------------ECVELGMSLFID--------MLMDGVM 238

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            +EFT TSV+S C       LGKQV A+  +       E +LPV N+ + LY + G+ +E
Sbjct: 239 PNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGC----ETNLPVKNSTMYLYLRKGETDE 294

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
           A  +F QM +  +++WNA++S Y  A ++D AK   +A R R                 G
Sbjct: 295 AMRLFEQMEDASIITWNAMISGY--AQIMDSAKDDLQA-RSR-----------------G 334

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
            + L +F  ++    KP  + F+  ++ C+ + ALE G Q+HAQ + SG+ S +   +AL
Sbjct: 335 FQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSAL 394

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           + MY +CG ++ AN  F  MP    V+W +MI+   QHG    AI+L+E+M   G+ P+ 
Sbjct: 395 VNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNE 454

Query: 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579
           ITF+++LSAC++AGLV+E   YF+ M   Y I P  DHY   ID+  R G+  +A   I 
Sbjct: 455 ITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIK 514

Query: 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639
              F+P+  IW +L+AGCR HGN++L   AA++L +L P    TY+LL NMY +  RW D
Sbjct: 515 RTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQD 574

Query: 640 AARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGY 699
            ARVRKLM+   V      SWI + +KV+ F  +D  HP+A  +Y+ LE L+ + + +GY
Sbjct: 575 VARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQLLENLLEKAKAIGY 634

Query: 700 VPDTKFVLHDMESDQKEYA--LSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAF 757
            P     L D E D+K  A  L  HSE+LAVA GL++ P GATVRV KN+ +C DCH++ 
Sbjct: 635 EPYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQTPPGATVRVTKNITMCRDCHSSI 694

Query: 758 KFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
           K  S +  REI+VRD KR H F+DG+CSCGD+
Sbjct: 695 KLFSLLENREIIVRDSKRLHKFKDGRCSCGDF 726



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 121/250 (48%), Gaps = 4/250 (1%)

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
           +A+ LF+ M ERN+++WT +++G   N     GL++F +M   G  P  Y     + +C 
Sbjct: 91  DARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACL 150

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
               ++ G+Q+H   +  G +S  S GN+L ++YA+ G +++A   F  +P  + ++W  
Sbjct: 151 ASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTT 210

Query: 490 MIAALGQHGNGAR-AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP 548
           MI+A  +        + L+  ML +G++P+  T  +V+S C     +  G++  +     
Sbjct: 211 MISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQ-VQAFSFK 269

Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG-CRIHGNIDLGI 607
            G           + L  R G+  EA  + + +    S   W A+++G  +I  +    +
Sbjct: 270 IGCETNLPVKNSTMYLYLRKGETDEAMRLFEQME-DASIITWNAMISGYAQIMDSAKDDL 328

Query: 608 QAAEQLFQLM 617
           QA  + FQ +
Sbjct: 329 QARSRGFQAL 338



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 154/350 (44%), Gaps = 53/350 (15%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTL----FDEIPQPDIVARTTLI 88
           L  S+   M+  G  P E  +  ++ +    L L   + +    F    + ++  + + +
Sbjct: 224 LGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTM 283

Query: 89  AAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSH-----------NSNGHAAIELF 137
             Y        A  +F +  ++    + +NAMI+ Y+             S G  A+ +F
Sbjct: 284 YLYLRKGETDEAMRLFEQ--MEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIF 341

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           RD++R  +KPD FTF+S+LS  + ++  E Q  Q+H   +KSG      V +AL+++Y K
Sbjct: 342 RDLKRSVMKPDLFTFSSILSVCSAMMALE-QGEQIHAQTIKSGFLSDVVVNSALVNMYNK 400

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C           +  A + F EMP R  ++WT+M++GY ++     A +  +        
Sbjct: 401 C---------GCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFE-------- 443

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                         +M +  ++ +E T+ S++SAC+ +GL    ++   Y    + +   
Sbjct: 444 --------------EMRLAGVRPNEITFVSLLSACSYAGLV---EEAEHYFDMMKKEYCI 486

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAG 366
           E  +     ++ ++ + G+V +A     +   E +   W+++++   S G
Sbjct: 487 EPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHG 536


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 224/510 (43%), Positives = 315/510 (61%), Gaps = 4/510 (0%)

Query: 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
           D FT +SV+ AC N      G+ +H  + +   +     +L + N +V LY  CG++ EA
Sbjct: 127 DTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRS----NLYLQNMIVHLYASCGEMGEA 182

Query: 341 RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGE 400
           R +F +MP+RD+V+WN +++  +  G  + A  LF  M ERN+ SWT MI+G  Q G  +
Sbjct: 183 RLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAK 242

Query: 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALI 460
           E + LF++M   G K  +      + +CA LGAL+ G ++H      G+  ++   N LI
Sbjct: 243 EAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLI 302

Query: 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI 520
            MY +CG +E A  VF  M     VSW+AMI  L  HG    A+ L+  M + GI P+ +
Sbjct: 303 DMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGV 362

Query: 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580
           TF+ +L AC+H GL+ EGRR+F +M   YGI P  +HY   +DLL RAG   EA + I +
Sbjct: 363 TFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILN 422

Query: 581 LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA 640
           +P KP+  +W ALL  CR+H N+++  +A + L +L P + G YV+LSN+YA  GRW+D 
Sbjct: 423 MPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDT 482

Query: 641 ARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYV 700
           ARVRK M+DR VKK PG S I VD  VH F+  + +HP+ + +++  E+L+ EMR  GYV
Sbjct: 483 ARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYV 542

Query: 701 PDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFM 760
           P+T  VL D+E  +K   +S HSEKLA+ FGLM  P    +R++KNLRIC DCH+AFK +
Sbjct: 543 PNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLI 602

Query: 761 SKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           S +V REIVVRD  RFH F D  CSC DYW
Sbjct: 603 SAIVNREIVVRDRNRFHCFNDNSCSCRDYW 632



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 126/467 (26%), Positives = 215/467 (46%), Gaps = 59/467 (12%)

Query: 64  LKLVYARTLFDEIPQPDI-VARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
           L+ V+A+ +    P   + + R  L+ A++ S     A+++F     +  +T  +N+ + 
Sbjct: 44  LRQVHAQIIKTNAPLSILPLTRVGLVCAFTPS--FHYAQQIFKCVEKQKPETFVWNSCLK 101

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTG 182
           A +   +   AI LF  +R+ DV PD FT +SVL A   +++     + +H  V K G  
Sbjct: 102 ALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRI-LHGVVEKVGFR 160

Query: 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLD 242
               + N ++ +Y  C           MG AR +F++MP+RD ++W  M+   +K    +
Sbjct: 161 SNLYLQNMIVHLYASC---------GEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHE 211

Query: 243 AAREFLDGMSENVGVAWNALISGYV---------HRELKMLMLRIQLDEFTYTSVISACA 293
            A +    M E    +W ++I+GYV         H   KM    ++ +E T  +V++ACA
Sbjct: 212 GAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACA 271

Query: 294 NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV 353
           + G   LG ++H Y  R   K     ++ ++N L+ +Y KCG + EA  +F +M ER +V
Sbjct: 272 DLGALDLGMRIHEYSNRHGFKR----NVRISNTLIDMYVKCGCLEEACKVFEEMEERTVV 327

Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
           SW+A                               MI GLA +G  EE L+LFS M   G
Sbjct: 328 SWSA-------------------------------MIGGLAMHGRAEEALRLFSDMSQVG 356

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAA 472
            +P    F G + +C+ +G +  GR+  A +    G    +     ++ + +R G++  A
Sbjct: 357 IEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEA 416

Query: 473 NCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           +     MP   + V W A++ A   H N   A E  + +L+   L D
Sbjct: 417 HEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLND 463



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 150/336 (44%), Gaps = 38/336 (11%)

Query: 27  NPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTT 86
           N +  S  R +H  +   GF+   ++ N ++ +Y    ++  AR LF+++PQ D+V    
Sbjct: 140 NLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNI 199

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           +IA      + + A ++F++ P   R+   + +MI  Y        AI LF  M    VK
Sbjct: 200 MIAQLIKQGDHEGAYDLFSRMP--ERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVK 257

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
            +  T  +VL+A A +   +   M++H    + G      + N LI +YVKC        
Sbjct: 258 CNEVTVVAVLAACADLGALDLG-MRIHEYSNRHGFKRNVRISNTLIDMYVKC-------- 308

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              +  A +VF+EM ER  +SW+ M+ G   +   + A      MS+ VG+  N +    
Sbjct: 309 -GCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQ-VGIEPNGV---- 362

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                            T+  ++ AC++ GL   G++  A + R +    P+  +     
Sbjct: 363 -----------------TFIGLLHACSHMGLISEGRRFFASMTR-DYGIIPQ--IEHYGC 402

Query: 327 LVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
           +V L  + G ++EA +    MP + + V W A+L A
Sbjct: 403 MVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGA 438


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 266/785 (33%), Positives = 414/785 (52%), Gaps = 116/785 (14%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+V  T L+  Y+   ++ L+   F    ++ ++   +N+M++AY        +++   +
Sbjct: 82  DVVLLTQLVTLYATLGDLSLSSTTFKH--IQRKNIFSWNSMVSAYVRRGRYRDSMDCVTE 139

Query: 140 MRR-DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
           +     V+PD +TF  VL A   + + EK    MHC V+K G      V  +LI +Y   
Sbjct: 140 LLSLSGVRPDFYTFPPVLKACLSLADGEK----MHCWVLKMGFEHDVYVAASLIHLY--- 192

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
                 S    +  A +VF +MP RD  SW  M++G+ +N  +  A   LD M       
Sbjct: 193 ------SRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTE---- 242

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                              +++D  T +S++  CA S     G  VH Y++    K   E
Sbjct: 243 ------------------EVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVI----KHGLE 280

Query: 319 FSLPVNNALVTLYWKCGKVN---------EARD--------------------------- 342
             + V+NAL+ +Y K G++          E RD                           
Sbjct: 281 SDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEM 340

Query: 343 -----------------IFNQMPER------------------DLVSWNAILSAYVSAGL 367
                            IF Q+ +R                  D+V  NA+++ Y   G 
Sbjct: 341 LFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGS 400

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG--FKPCDYAFAGAI 425
           ID A+++FE +  R+++SW  +I+G AQNG   E +  ++ M  EG    P    +   +
Sbjct: 401 IDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMME-EGRTIVPNQGTWVSIL 459

Query: 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV 485
            + + +GAL+ G ++H +L+ +     +     LI MY +CG +E A  +F  +P   SV
Sbjct: 460 PAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSV 519

Query: 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETM 545
            WNA+I++LG HG+G +A++L++ M  +G+  D ITF+++LSAC+H+GLV E +  F+TM
Sbjct: 520 PWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTM 579

Query: 546 HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDL 605
              Y I P   HY   +DL  RAG   +A +++ ++P +  A IW  LLA CRIHGN +L
Sbjct: 580 QKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAEL 639

Query: 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDN 665
           G  A+++L ++   + G YVLLSN+YAN+G+W+ A +VR L RDRG++K PG S + V +
Sbjct: 640 GTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPGWSSVVVGS 699

Query: 666 KVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEK 725
            V VF   + +HP+   +Y+ L  L  +M+ LGYVPD  FVL D+E D+KE  L++HSE+
Sbjct: 700 VVEVFYAGNQSHPQCAEIYEELRVLNAKMKSLGYVPDYSFVLQDVEEDEKEEILTSHSER 759

Query: 726 LAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCS 785
           LA+ FG++  P  + +R+ KNLR+CGDCHNA K++SK+  REI+VRD  RFHHF+DG CS
Sbjct: 760 LAIVFGIISTPPKSPIRIFKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGICS 819

Query: 786 CGDYW 790
           CGDYW
Sbjct: 820 CGDYW 824



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/427 (24%), Positives = 191/427 (44%), Gaps = 73/427 (17%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + D+     LI  YS    ++ A+ +F+   +++RD V +N++I AY  N +   A+  F
Sbjct: 280 ESDVFVSNALINMYSKFGRLQDAQRVFDG--MEVRDLVSWNSIIAAYEQNDDPVTALGFF 337

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL-NALISVYV 196
           ++M    ++PD  T  S+ S    +  + +    +H  VV+        V+ NAL+++Y 
Sbjct: 338 KEMLFVGMRPDLLTVVSLASIFGQL-SDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYA 396

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           K  S         +  AR VF+++P RD +SW T++TGY +N           G++    
Sbjct: 397 KLGS---------IDCARAVFEQLPSRDVISWNTLITGYAQN-----------GLASEAI 436

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
            A+N +  G            I  ++ T+ S++ A ++ G  + G ++H  L+    K  
Sbjct: 437 DAYNMMEEGRT----------IVPNQGTWVSILPAYSHVGALQQGMKIHGRLI----KNC 482

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
               + V   L+ +Y KCG++ +A  +F ++P+   V WNAI                  
Sbjct: 483 LFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAI------------------ 524

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
                        IS L  +G+GE+ L+LF  MR +G K     F   +++C+  G ++ 
Sbjct: 525 -------------ISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDE 571

Query: 437 GRQLHAQLVHSGY--DSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAA 493
             Q     +   Y    +L     ++ ++ R G +E A  + + MP   D+  W  ++AA
Sbjct: 572 A-QWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAA 630

Query: 494 LGQHGNG 500
              HGN 
Sbjct: 631 CRIHGNA 637



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 162/346 (46%), Gaps = 29/346 (8%)

Query: 330 LYWKCGKVNEARDIFNQM----PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
           ++  C  +N A+ +   +      +D+V    +++ Y + G +  + + F+ ++ +N+ S
Sbjct: 57  VFRSCTNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFS 116

Query: 386 WTVMISGLAQNGYGEEGLKLFSQM-RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
           W  M+S   + G   + +   +++  L G +P  Y F   + +C    +L +G ++H  +
Sbjct: 117 WNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACL---SLADGEKMHCWV 173

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
           +  G++  +    +LI +Y+R G VE A+ VF  MP  D  SWNAMI+   Q+GN A A+
Sbjct: 174 LKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEAL 233

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG--EDHYAR-- 560
            + ++M  E +  D +T  ++L  C  +  V  G      +   Y I  G   D +    
Sbjct: 234 RVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGG-----VLVHLYVIKHGLESDVFVSNA 288

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN--IDLGIQAAEQLFQLMP 618
            I++  + G+  +A+ V D +  +     W +++A    + +    LG    E LF  M 
Sbjct: 289 LINMYSKFGRLQDAQRVFDGMEVRDLVS-WNSIIAAYEQNDDPVTALGF-FKEMLFVGMR 346

Query: 619 HHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVD 664
               T V L++++  L       R+ + +    V+    C W+EVD
Sbjct: 347 PDLLTVVSLASIFGQLSD----RRIGRAVHGFVVR----CRWLEVD 384



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 85/400 (21%), Positives = 165/400 (41%), Gaps = 78/400 (19%)

Query: 21  QLCDPRNPITSSLARSVHAHMISSGFKPREHII-NRLIDIYCKSLKLVYARTLFDEIPQP 79
           QL D R      + R+VH  ++   +   + +I N L+++Y K   +  AR +F+++P  
Sbjct: 361 QLSDRR------IGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSR 414

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+++  TLI  Y+ +    LA E                  I AY+    G   +     
Sbjct: 415 DVISWNTLITGYAQNG---LASE-----------------AIDAYNMMEEGRTIV----- 449

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
                  P+  T+ S+L A +  V   +Q M++H  ++K+   L   V   LI +Y KC 
Sbjct: 450 -------PNQGTWVSILPAYSH-VGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKC- 500

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                     +  A  +F E+P+   + W  +++    + + + A +    M  +     
Sbjct: 501 --------GRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRAD----- 547

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                             ++ D  T+ S++SAC++SGL    +      ++ E +  P  
Sbjct: 548 -----------------GVKADHITFVSLLSACSHSGLVDEAQWCFD-TMQKEYRIKP-- 587

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA---YVSAGLIDEAKSLF 375
           +L     +V L+ + G + +A ++ + MP + D   W  +L+A   + +A L   A    
Sbjct: 588 NLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRL 647

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
             +   N+  + ++ +  A  G  E  +K+ S  R  G +
Sbjct: 648 LEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLR 687


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 271/777 (34%), Positives = 405/777 (52%), Gaps = 112/777 (14%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           T L+  Y     V+  R +F   P   R+ V + +++T Y         + LF  MR + 
Sbjct: 139 TALVDMYMKCGGVEDGRVVFEGMP--KRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEG 196

Query: 145 VKPDNFTFTSVLSALAL--IVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSP 202
           V P+ FTFTSVLSA+A    V+  +   ++H   VK G      V N+LI++Y KC    
Sbjct: 197 VWPNPFTFTSVLSAVASQGAVDLGR---RVHAQSVKFGCRSTVFVCNSLINMYSKC---- 249

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVAWNA 261
                 L+  A+ VF +M  RD +SW T+M G + N++ L+A + F D  +         
Sbjct: 250 -----GLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMA------ 298

Query: 262 LISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
                            +L + TY++VI  CAN     L +Q+H+ +L+           
Sbjct: 299 -----------------KLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGN--- 338

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
            V  A++  Y KCG++++A +IF  MP  +++VSW A++   +    I  A +LF  MRE
Sbjct: 339 -VMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMRE 397

Query: 381 RNLLS-----------------------------------WTVMISGLAQNGYGEEGLKL 405
            N+                                      T +++  ++ G  EE L +
Sbjct: 398 DNVKPNEFTYSTVLTASIPILLPQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSI 457

Query: 406 FS-------------------------------QMRLEGFKPCDYAFAGAITSCAGLGA- 433
           F                                +M ++G KP ++  + AI +CA   A 
Sbjct: 458 FKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAG 517

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
           ++ GRQ HA  +   Y  ++  G+AL+TMYAR G +++A  VF    + D VSWN+MI+ 
Sbjct: 518 IDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISG 577

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
             QHG    A++ + QM   GI  D  TFL V+  C HAGLVKEG++YF++M   + I P
Sbjct: 578 YAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISP 637

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
             +HY+  +DL  RAGK  E  ++I+ +PF   A +W  LL  CR+H N++LG  AA++L
Sbjct: 638 TMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRTLLGACRVHKNVELGKLAAQKL 697

Query: 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVD 673
             L P  + TYVLLSN+YA  GRW +   VRKLM  + VKKE GCSWI++ NKVH F+  
Sbjct: 698 LLLEPDDSATYVLLSNIYAAAGRWKERDEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIAC 757

Query: 674 DTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLM 733
           D +HP ++ +Y  L+ +   +++ GY P+T  VLHD+  +QKE  L  HSE+LA+AFGL+
Sbjct: 758 DKSHPLSEQIYAKLKAMTTRLKQEGYCPNTSVVLHDIAEEQKETMLVMHSERLALAFGLI 817

Query: 734 KLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             P    ++++KNLR+CGDCH   K +S +  REI++RD  RFHHF  G CSCGD+W
Sbjct: 818 ATPPRTPLQIVKNLRVCGDCHMVMKMVSLIEDREIIMRDCSRFHHFNAGACSCGDFW 874



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 3/162 (1%)

Query: 436 NGRQLHAQLVHSGYD-SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
           +G QLH   V  G+D + +  G AL+ MY +CG VE    VF  MP  + V+W +++   
Sbjct: 117 SGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGY 176

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
            Q    +  + L+ +M  EG+ P+  TF +VLSA    G V  GRR        +G    
Sbjct: 177 VQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRR-VHAQSVKFGCRST 235

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
                  I++  + G   EAK V   +  +     W  L+AG
Sbjct: 236 VFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVS-WNTLMAG 276



 Score = 47.4 bits (111), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 9/142 (6%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP-----QPDIVARTTLI 88
           A +V   M   G KP E  I+  ID        +     F  I      Q  I   + L+
Sbjct: 485 ATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALV 544

Query: 89  AAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPD 148
             Y+   ++  AR +F +     RD V +N+MI+ Y+ +     A++ FR M    ++ D
Sbjct: 545 TMYARKGSIDSARIVFERQ--TDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMD 602

Query: 149 NFTFTSVLSAL--ALIVEEEKQ 168
             TF +V+     A +V+E +Q
Sbjct: 603 GATFLAVIVGCTHAGLVKEGQQ 624


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 250/692 (36%), Positives = 376/692 (54%), Gaps = 79/692 (11%)

Query: 142 RDDVKPDNFTFTSVLSALALIVE------EEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           RD  K   F    +L++  L+ +      + K   ++H  +    +    S+   L+  Y
Sbjct: 4   RDICKIITFFIQQILTSFGLLAKALDQNPDIKTLKKLHTMIFYLNSHQNPSLGIKLMRSY 63

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
             C   P        G  R+VFDEM +R+ + +  M+  YV N   D      DG+    
Sbjct: 64  AAC-GEP--------GLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYD------DGL---- 104

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
            + +  +++G             + D +TY  V+ AC+ S   R G  +H  +L    K 
Sbjct: 105 -LVFREMVNG-----------GFRPDNYTYPCVLKACSCSENLRYGLLIHGDVL----KV 148

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA---- 371
             +F+L V N L+ +Y KCG + EAR +F++M  +D+VSWN++++ Y      D+A    
Sbjct: 149 GLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEIC 208

Query: 372 ---------------------------------KSLFEAMRERNLLSWTVMISGLAQNGY 398
                                            + +F  +  +NL+SW VMI    +N  
Sbjct: 209 REMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYMKNSL 268

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
             + + L+ QM     +P    FA  + +C  L AL  GR++H  +       +L   N+
Sbjct: 269 PTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENS 328

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           LI MYARCG ++ A  VF+ M   D  SW ++I+A G  G G  A+ L+ +ML  G  PD
Sbjct: 329 LIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPD 388

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVI 578
            I F+ +LSAC+H+GL+ EGR YF+ M   Y I P  +HYA  +DLL RAG+  EA ++I
Sbjct: 389 SIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNII 448

Query: 579 DSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWD 638
             +P +P+  +W  LL+ CR+  N+D+GI AA+ L QL P  +G YVLLSN+YA  GRW 
Sbjct: 449 KQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNIYAKAGRWK 508

Query: 639 DAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLG 698
           +   +R +M+ + ++K PG S +E++N+VH FL  DT+HP+++ +Y+ L  LV +M++LG
Sbjct: 509 EVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEIYEELGVLVAKMKELG 568

Query: 699 YVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFK 758
           YVP+T   LHD+E + KE  L+ HSEKLA+ F L+       +R+ KNLR+CGDCH A K
Sbjct: 569 YVPETDSALHDVEEEDKEGHLAVHSEKLAIVFALLN-TQEYQIRITKNLRVCGDCHIAAK 627

Query: 759 FMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            +SK+V REI+VRD  RFHHF+DG CSCGDYW
Sbjct: 628 LISKIVEREIIVRDTNRFHHFKDGVCSCGDYW 659



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 117/441 (26%), Positives = 194/441 (43%), Gaps = 94/441 (21%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           L+ +Y+A     L R++F++  +  R+ VFYN MI +Y +N      + +FR+M     +
Sbjct: 59  LMRSYAACGEPGLTRKVFDE--MSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFR 116

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           PDN+T+  VL A +   E  +  + +H  V+K G      V N LI++Y KC        
Sbjct: 117 PDNYTYPCVLKACS-CSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKC-------- 167

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKN----DYLDAAREFLD------------- 249
              +  ARRVFDEM  +D +SW +M+ GY  N    D L+  RE  D             
Sbjct: 168 -GCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASL 226

Query: 250 ------GMSENV--------------GVAWNALISGYVHRE---------LKMLMLRIQL 280
                   SENV               ++WN +I  Y+            L+M   R++ 
Sbjct: 227 MPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEP 286

Query: 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
           D  T+ SV+ AC +     LG+++H Y+ + +  P    +L + N+L+ +Y +CG +++A
Sbjct: 287 DAITFASVLPACGDLSALLLGRRIHEYVEKKKLCP----NLLLENSLIDMYARCGCLDDA 342

Query: 341 RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGE 400
           + +F++M  RD+ SW +++SAY                                  G G 
Sbjct: 343 KRVFDRMKFRDVASWTSLISAY-------------------------------GMTGQGC 371

Query: 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNAL 459
             + LF++M   G  P   AF   +++C+  G L+ GR    Q+         +     L
Sbjct: 372 NAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACL 431

Query: 460 ITMYARCGVVEAANCVFNTMP 480
           + +  R G V+ A  +   MP
Sbjct: 432 VDLLGRAGRVDEAYNIIKQMP 452



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 160/365 (43%), Gaps = 79/365 (21%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS-- 94
           +H  ++  G      + N LI +Y K   L  AR +FDE+   D+V+  +++A Y+ +  
Sbjct: 141 IHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMR 200

Query: 95  --DNVKLAREM--FNKTP-----------------------------LKMRDTVFYNAMI 121
             D +++ REM  + + P                             L+ ++ + +N MI
Sbjct: 201 FDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMI 260

Query: 122 TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL----ALIVEEEKQCMQMHCTVV 177
             Y  NS    A++L+  M +  V+PD  TF SVL A     AL++       ++H  V 
Sbjct: 261 RVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGR-----RIHEYVE 315

Query: 178 KSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK 237
           K        + N+LI +Y +C           +  A+RVFD M  RD  SWT++++ Y  
Sbjct: 316 KKKLCPNLLLENSLIDMYARC---------GCLDDAKRVFDRMKFRDVASWTSLISAY-- 364

Query: 238 NDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGL 297
                       GM+   G   NA     V    +ML      D   + +++SAC++SGL
Sbjct: 365 ------------GMT---GQGCNA-----VALFTEMLNSGQAPDSIAFVAILSACSHSGL 404

Query: 298 FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWN 356
              G+ ++   +  + + TP         LV L  + G+V+EA +I  QMP E +   W 
Sbjct: 405 LDEGR-IYFKQMTDDYRITPRIEHYA--CLVDLLGRAGRVDEAYNIIKQMPIEPNERVWA 461

Query: 357 AILSA 361
            +LS+
Sbjct: 462 TLLSS 466



 Score = 43.5 bits (101), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 8/132 (6%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           +AS L  C   + +   L R +H ++      P   + N LID+Y +   L  A+ +FD 
Sbjct: 291 FASVLPACGDLSALL--LGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDR 348

Query: 76  IPQPDIVARTTLIAAYSAS----DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           +   D+ + T+LI+AY  +    + V L  EM N    +  D++ + A+++A SH+    
Sbjct: 349 MKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSG--QAPDSIAFVAILSACSHSGLLD 406

Query: 132 AAIELFRDMRRD 143
                F+ M  D
Sbjct: 407 EGRIYFKQMTDD 418


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/667 (36%), Positives = 382/667 (57%), Gaps = 66/667 (9%)

Query: 125 SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLF 184
           S N N    + +   +    ++PD   +  +L    ++  + KQ   +H  ++ S     
Sbjct: 67  SLNPNSTTGLHVLDLINNGSLEPDRTIYNKLLKRCTML-GKLKQGKLVHTHLMNSKFRND 125

Query: 185 TSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAA 244
             + N+++ +Y KC S         +  AR+VFDEM  +D ++WT+M+TGY ++ Y  +A
Sbjct: 126 LVIKNSILFMYAKCGS---------LEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSA 176

Query: 245 REFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304
                           AL+       L+M+   ++ +EF  +S++  C   G    GKQ+
Sbjct: 177 T--------------TALV-----LFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQI 217

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVS 364
           H    +   +     ++ V ++LV +Y +CG++ E+R +F+++  ++ VSWNA++S +  
Sbjct: 218 HGCCWKYGFQE----NVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGF-- 271

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
                                        A+ G GEE L LF +M+ EGF   ++ ++  
Sbjct: 272 -----------------------------ARKGEGEEALGLFVKMQREGFGATEFTYSAL 302

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           + S +  G+LE G+ LHA ++ SG       GN L+ MYA+ G +  A  VF+ +  VD 
Sbjct: 303 LCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDV 362

Query: 485 VSWNAMIAALGQHGNGARAIELYEQ-MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFE 543
           VS N+M+    QHG G  A+EL+E+ ML   I P+ ITFL+VL+AC+HAGL+ EG  YFE
Sbjct: 363 VSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFE 422

Query: 544 TMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNI 603
            M   YG+ P   HY   +DL  RAG   +AK  I+ +P +P+A IW ALL   ++H N 
Sbjct: 423 LMK-KYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNT 481

Query: 604 DLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEV 663
           ++G  AA+++ +L P + G + LLSN+YA+ G+W D A+VRK M+D G+KKEP CSW+E+
Sbjct: 482 EMGAYAAQKVLELDPFYPGAHTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEI 541

Query: 664 DNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHS 723
           +N VH+F  +D +HP+   VY+  E L  +++++GYVPDT  V   ++  +KE  L  HS
Sbjct: 542 ENSVHIFSANDISHPQKNKVYEMWENLNQKIKEIGYVPDTSHVHVFVDQQEKELNLQYHS 601

Query: 724 EKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGK 783
           EKLA+AF L+    G+ +R++KN+R+CGDCH+A K++S VV REI+VRD  RFHHFRDG 
Sbjct: 602 EKLALAFALLNTKPGSVIRIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFRDGS 661

Query: 784 CSCGDYW 790
           CSC DYW
Sbjct: 662 CSCRDYW 668



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/479 (23%), Positives = 217/479 (45%), Gaps = 99/479 (20%)

Query: 41  MISSG-FKPREHIINRLIDIYCKSL------KLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           +I++G  +P   I N+L+   C  L      KLV+   L +   + D+V + +++  Y+ 
Sbjct: 81  LINNGSLEPDRTIYNKLLK-RCTMLGKLKQGKLVHTH-LMNSKFRNDLVIKNSILFMYAK 138

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHN---SNGHAAIELFRDMRRDDVKPDNF 150
             ++++AR++F++  +K  D V + +MIT YS +   S+   A+ LF +M RD ++P+ F
Sbjct: 139 CGSLEIARQVFDEMCVK--DVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEF 196

Query: 151 TFTSVLSALALIVEEEKQCM---QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSR 207
             +S++     +      C+   Q+H    K G      V ++L+ +Y +C         
Sbjct: 197 ALSSLVKCCGFL----GSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARC--------- 243

Query: 208 SLMGAARRVFDEMPERDELSWTTMMTGYV-KNDYLDAAREFLDGMSENVGVAWNALISGY 266
             +  +R VFDE+  ++E+SW  +++G+  K +  +A   F+    E  G          
Sbjct: 244 GELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGAT-------- 295

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                          EFTY++++ + + +G    GK +HA+++++  K        V N 
Sbjct: 296 ---------------EFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGY----VGNT 336

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR-----ER 381
           L+ +Y K G + +A+ +F+++ + D+VS N++L  Y   GL  EA  LFE M      E 
Sbjct: 337 LLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEP 396

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
           N +++  +++  +  G  +EGL  F  M+  G +P                         
Sbjct: 397 NDITFLSVLTACSHAGLLDEGLYYFELMKKYGLEP------------------------- 431

Query: 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
                      LS    ++ ++ R G+++ A      MP   ++  W A++ A   H N
Sbjct: 432 ----------KLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKN 480



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 5/148 (3%)

Query: 13  ANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTL 72
           A  +     LC      +    + +HAHM+ SG K   ++ N L+ +Y KS  +  A+ +
Sbjct: 294 ATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKV 353

Query: 73  FDEIPQPDIVARTTLIAAYS----ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           FD + + D+V+  +++  Y+      + V+L  EM     ++  D  F  +++TA SH  
Sbjct: 354 FDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFL-SVLTACSHAG 412

Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVL 156
                +  F  M++  ++P    +T+V+
Sbjct: 413 LLDEGLYYFELMKKYGLEPKLSHYTTVV 440


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 259/653 (39%), Positives = 369/653 (56%), Gaps = 70/653 (10%)

Query: 140 MRRDDVKPDNFTFTSVLSALA--LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           MR     P+ FTF+S+LSA A  ++V   +Q   +H  + K G      V  AL+ +Y K
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQ---LHSLIHKHGFDANIFVGTALVDMYAK 57

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C           M +A RVFD+MPER+ +SW +M+ G+  N+  D A          VGV
Sbjct: 58  CAD---------MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRA----------VGV 98

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
             + L      RE  ++      +E + +SV+SACAN G    G+QVH  +++    P  
Sbjct: 99  FKDVL------REKTVIP-----NEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVPLT 147

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
                V N+L+ +Y+KC                                  DE   LF+ 
Sbjct: 148 Y----VMNSLMDMYFKCR-------------------------------FFDEGVKLFQC 172

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
           + +R++++W V++ G  QN   EE    F  MR EG  P + +F+  + S A L AL  G
Sbjct: 173 VGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQG 232

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
             +H Q++  GY  ++    +LITMYA+CG +  A  VF  + + + +SW AMI+A   H
Sbjct: 233 TAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLH 292

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
           G   + IEL+E ML EGI P  +TF+ VLSAC+H G V+EG  +F +M   + + PG +H
Sbjct: 293 GCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEH 352

Query: 558 YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           YA  +DLL RAG   EAK  I+S+P KP+  +W ALL  CR +GN+ +G +AAE+LF++ 
Sbjct: 353 YACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEME 412

Query: 618 PHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAH 677
           P++ G YVLL+NM    GR ++A  VR+LM   GV+KEPGCSWI+V N   VF   D +H
Sbjct: 413 PYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSH 472

Query: 678 PEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPG 737
             +  +YK LE+L   ++K GYV +T+FV + +E +++E  L  HSEKLA+AFGL+ LP 
Sbjct: 473 SSSDEIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFGLLTLPI 532

Query: 738 GATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            + +R+ KNLR CG CH   K  SK+  REI+VRD  RFH F DG CSCGDYW
Sbjct: 533 DSPIRIKKNLRTCGHCHTVMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 585



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 111/509 (21%), Positives = 220/509 (43%), Gaps = 87/509 (17%)

Query: 41  MISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ----PDIVARTTLIAAYSASDN 96
           M  SG  P +   + ++     ++ +++ + L   I +     +I   T L+  Y+   +
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCAD 60

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD-MRRDDVKPDNFTFTSV 155
           +  A  +F++ P   R+ V +N+MI  + HN+    A+ +F+D +R   V P+  + +SV
Sbjct: 61  MHSAVRVFDQMP--ERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSV 118

Query: 156 LSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARR 215
           LSA A +        Q+H  VVK G    T V+N+L+ +Y KC                +
Sbjct: 119 LSACANMGGLNFG-RQVHGVVVKFGLVPLTYVMNSLMDMYFKC---------RFFDEGVK 168

Query: 216 VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLM 275
           +F  + +RD ++W  ++ G+V+ND  + A  +                  +V R   +L 
Sbjct: 169 LFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYF-----------------WVMRREGILP 211

Query: 276 LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG 335
                DE ++++V+ + A+      G  +H  +++         ++ +  +L+T+Y KCG
Sbjct: 212 -----DEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVK----NMCILGSLITMYAKCG 262

Query: 336 KVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL----LSWTVMIS 391
            + +A  +F  + + +++SW A++SAY   G  ++   LFE M    +    +++  ++S
Sbjct: 263 SLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLS 322

Query: 392 GLAQNGYGEEGLKLFSQM-RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
             +  G  EEGL  F+ M ++    P    +A                            
Sbjct: 323 ACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYA---------------------------- 354

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGNGARAIELYEQ 509
                   ++ +  R G ++ A     +MP   + S W A++ A  ++GN     E  E+
Sbjct: 355 -------CMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAER 407

Query: 510 MLK-EGILPDRITFLTVLSACNHAGLVKE 537
           + + E   P     L   + C  +G ++E
Sbjct: 408 LFEMEPYNPGNYVLLA--NMCTRSGRLEE 434



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 166/396 (41%), Gaps = 88/396 (22%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           +  R VH  ++  G  P  +++N L+D+Y K          FDE                
Sbjct: 129 NFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKC-------RFFDE---------------- 165

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                VKL + + +      RD V +N ++  +  N     A   F  MRR+ + PD  +
Sbjct: 166 ----GVKLFQCVGD------RDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEAS 215

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           F++VL + A +     Q   +H  ++K G      +L +LI++Y KC S         + 
Sbjct: 216 FSTVLHSSASLAALH-QGTAIHDQIIKLGYVKNMCILGSLITMYAKCGS---------LV 265

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A +VF+ + + + +SWT M++ Y            L G +       N +I  + H   
Sbjct: 266 DAYQVFEGIEDHNVISWTAMISAYQ-----------LHGCA-------NQVIELFEH--- 304

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLG-------KQVHAYLLRTEAKPTPEFSLPVN 324
            ML   I+    T+  V+SAC+++G    G       K++H      +  P PE      
Sbjct: 305 -MLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIH------DMNPGPEHYA--- 354

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSAYVSAGLI----DEAKSLFEAMR 379
             +V L  + G ++EA+     MP +   S W A+L A    G +    + A+ LFE M 
Sbjct: 355 -CMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFE-ME 412

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
             N  ++ ++ +   ++G  EE  ++   M + G +
Sbjct: 413 PYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVR 448


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 255/730 (34%), Positives = 399/730 (54%), Gaps = 78/730 (10%)

Query: 65  KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
           K +++R    +  + D++   +L+  Y+   +++ A+ +F +   + R    +NAMI AY
Sbjct: 141 KAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGR-RSVSSWNAMIAAY 199

Query: 125 SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA---LALIVEEEKQCMQMHCTVVKSGT 181
           + + +   AI L+ DM   DV+P   TFTSVLSA   L L+     Q  ++H  +   GT
Sbjct: 200 AQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLL----DQGRKIHALISSRGT 252

Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
            L  S+ NAL+++Y +C           +  A ++F  +P RD +SW+ M+  + + D  
Sbjct: 253 ELDLSLQNALLTMYARC---------KCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLF 303

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
           D A EF                        KM +  ++ + +T+ SV+ ACA+ G  R G
Sbjct: 304 DEAIEFYS----------------------KMQLEGVRPNYYTFASVLLACASVGDLRAG 341

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
           + VH  +L    K T                                   LV+  A++  
Sbjct: 342 RAVHDQILGNGYKIT-----------------------------------LVNGTALVDL 366

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC-DYA 420
           Y S G +DEA+SLF+ +  R+   WTV+I G ++ G+    L+L+ +M+     P     
Sbjct: 367 YTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKII 426

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
           ++  I++CA LGA  + RQ H+ +   G  S      +L+ MY+R G +E+A  VF+ M 
Sbjct: 427 YSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMS 486

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
           + D+++W  +IA   +HG    A+ LY++M  EG  P  +TF+ VL AC+HAGL ++G++
Sbjct: 487 SRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQ 546

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
            F ++   Y + P   HY+  IDLL RAG+ S+A+++I+++P +P+   W +LL   RIH
Sbjct: 547 LFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIH 606

Query: 601 GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSW 660
            ++     AA Q+ +L P    +YVLLSN++A  G     A VR  M  RGVKK  G SW
Sbjct: 607 KDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSW 666

Query: 661 IEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALS 720
           IEV +++H F V D +HP  Q ++  L++L  ++++ GYVP+++ VLHD+   +KE  L 
Sbjct: 667 IEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLR 726

Query: 721 THSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFR 780
            HSEKLA+AFGL+    G T+R+   LRIC DCH+A KF+S +  REI+VRD  RFH FR
Sbjct: 727 LHSEKLAIAFGLIATAPGTTLRIFNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKFR 786

Query: 781 DGKCSCGDYW 790
           DG+CSCGDYW
Sbjct: 787 DGQCSCGDYW 796



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 129/559 (23%), Positives = 237/559 (42%), Gaps = 121/559 (21%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R +HA + S G +    + N L+ +Y +   L  A  +F  +P+ D+V+ + +IAA++ 
Sbjct: 240 GRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAE 299

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
           +D       +F++                          AIE +  M+ + V+P+ +TF 
Sbjct: 300 TD-------LFDE--------------------------AIEFYSKMQLEGVRPNYYTFA 326

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           SVL A A  V + +    +H  ++ +G  +      AL+ +Y         +S   +  A
Sbjct: 327 SVLLACA-SVGDLRAGRAVHDQILGNGYKITLVNGTALVDLY---------TSYGSLDEA 376

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           R +FD++  RDE  WT ++ GY K  +     E                    ++RE+K 
Sbjct: 377 RSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLE--------------------LYREMKN 416

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP-TPEFSLPVNNALVTLYW 332
              ++   +  Y+ VISACA+ G F   +Q H+ +   EA     +F L    +LV +Y 
Sbjct: 417 -TTKVPATKIIYSCVISACASLGAFADARQAHSDI---EADGMISDFVLA--TSLVNMYS 470

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           + G +  AR +F++M  RD ++W                               T +I+G
Sbjct: 471 RWGNLESARQVFDKMSSRDTLAW-------------------------------TTLIAG 499

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY--D 450
            A++G     L L+ +M LEG +P +  F   + +C+  G  E G+QL    + S Y   
Sbjct: 500 YAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFIS-IQSDYAMH 558

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQ 509
            +++  + +I + +R G +  A  + N MP   + V+W++++ A   H +  RA     Q
Sbjct: 559 PNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQ 618

Query: 510 MLK-EGILPDRITFLTVLSAC--NHAGLV-------------KEGRRYFETMHGPYGIPP 553
           + K + + P     L+ + A   N AG+              + G  + E     +    
Sbjct: 619 ITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNV 678

Query: 554 GEDHYARFIDLLCRAGKFS 572
           G++ + RF ++     + S
Sbjct: 679 GDNSHPRFQEIFAELQRLS 697



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 157/353 (44%), Gaps = 82/353 (23%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           +AS L  C     + +   R+VH  ++ +G+K        L+D+Y     L  AR+LFD+
Sbjct: 325 FASVLLACASVGDLRA--GRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQ 382

Query: 76  IPQPDIVARTTLIAAYSASDN----VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           I   D    T LI  YS   +    ++L REM N T +     + Y+ +I+A        
Sbjct: 383 IENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPA-TKIIYSCVISAC------- 434

Query: 132 AAIELFRDMRR--DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLN 189
           A++  F D R+   D++ D      VL+                                
Sbjct: 435 ASLGAFADARQAHSDIEADGMISDFVLA-------------------------------T 463

Query: 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD 249
           +L+++Y +  +         + +AR+VFD+M  RD L+WTT++ GY K+           
Sbjct: 464 SLVNMYSRWGN---------LESARQVFDKMSSRDTLAWTTLIAGYAKHG---------- 504

Query: 250 GMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
                 G+A        +++E++  +   +  E T+  V+ AC+++GL   GKQ+    +
Sbjct: 505 ----EHGLALG------LYKEME--LEGAEPSELTFMVVLYACSHAGLQEQGKQL---FI 549

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
             ++      ++   + ++ L  + G++++A ++ N MP E + V+W+++L A
Sbjct: 550 SIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGA 602


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 264/804 (32%), Positives = 410/804 (50%), Gaps = 112/804 (13%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y S LQLC     I     R +H+ + S+  +    + ++L+ +Y     L   R +FD+
Sbjct: 104 YCSVLQLCADLKSIQD--GRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDK 161

Query: 76  IPQPDIVARTTLIAAYSASDN------------------VKLAREMFNKTPLKMRDTVFY 117
           +    +     L+  Y+   N                  V+ AR++F++  L  RD + +
Sbjct: 162 VANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDE--LGDRDVISW 219

Query: 118 NAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVV 177
           N+MI+ Y  N      ++LF  M    +  D  T  SV++                    
Sbjct: 220 NSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGC------------------ 261

Query: 178 KSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG-AARRVFDEMPERDELSWTT-MMTGY 235
            S TG+                    +  R+L G A +  F +     EL+    ++  Y
Sbjct: 262 -SNTGML-------------------LLGRALHGYAIKASFGK-----ELTLNNCLLDMY 296

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLR---------IQLDEFTYT 286
            K+  L++A +  + M E   V+W ++I+GY    L  + +R         I  D FT T
Sbjct: 297 SKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTIT 356

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
           +++ ACA +GL   GK VH Y+                                    N+
Sbjct: 357 TILHACACTGLLENGKDVHNYIKE----------------------------------NK 382

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
           M + DL   NA++  Y   G + +A S+F  M+ ++++SW  MI G ++N    E L LF
Sbjct: 383 M-QSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLF 441

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
            +M+    KP     A  + +CA L ALE G+++H  ++ +G+       NAL+ MY +C
Sbjct: 442 VEMQYNS-KPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKC 500

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G +  A  +F+ +P  D VSW  MIA  G HG G+ AI  + +M   GI PD ++F+++L
Sbjct: 501 GALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISIL 560

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
            AC+H+GL+ EG  +F  M     I P  +HYA  +DLL RAG  S+A   I  +P +P 
Sbjct: 561 YACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPD 620

Query: 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKL 646
           A IW ALL GCRI+ ++ L  + AE +F+L P + G YVLL+N+YA   +W++  ++R+ 
Sbjct: 621 ATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRER 680

Query: 647 MRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFV 706
           +  RG++K PGCSWIE+  KVH+F+  D++HP A  +   L++    M++ G+ P  ++ 
Sbjct: 681 IGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYA 740

Query: 707 LHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGR 766
           L   +  +KE AL  HSEK+A+AFG++ LP G TVRV KNLR+CGDCH   KFMSK+V R
Sbjct: 741 LIKADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKR 800

Query: 767 EIVVRDGKRFHHFRDGKCSCGDYW 790
           +I++RD  RFHHF+DG CSC  +W
Sbjct: 801 DIILRDSNRFHHFKDGSCSCRGHW 824



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 88/274 (32%), Positives = 135/274 (49%), Gaps = 22/274 (8%)

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
           TY SV+  CA+    + G+++H+ +   +     E    + + LV +Y  CG + E R I
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDV----EVDGVLGSKLVFMYVTCGDLREGRRI 158

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE------------------RNLLS 385
           F+++    +  WN +++ Y   G   E+ SLF+ MRE                  R+++S
Sbjct: 159 FDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVIS 218

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
           W  MISG   NG  E+GL LF QM L G           +  C+  G L  GR LH   +
Sbjct: 219 WNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAI 278

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIE 505
            + +   L+  N L+ MY++ G + +A  VF TM     VSW +MIA   + G    ++ 
Sbjct: 279 KASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVR 338

Query: 506 LYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
           L+ +M KEGI PD  T  T+L AC   GL++ G+
Sbjct: 339 LFHEMEKEGISPDIFTITTILHACACTGLLENGK 372


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/543 (42%), Positives = 324/543 (59%), Gaps = 13/543 (2%)

Query: 257 VAWNALISGYVHRE---------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY 307
           V WNALISG+             + M+         TY SV+SAC       LG QVH  
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKR 186

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367
           +L +   P       V NALV +Y +CG ++ A  +F  M  R + SW +++S  V +G 
Sbjct: 187 VLESGVLPDQR----VENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQ 242

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
           +D A+ LF+ M ER+ ++WT MI G  Q G   + L+ F  M++   +  ++     +T+
Sbjct: 243 VDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTA 302

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
           CA LGALE G      +   G    +  GNALI MY++CG +E A  VF  M N D  +W
Sbjct: 303 CAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTW 362

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
            A+I  L  +G G  AI+++ +ML+    PD +TF+ VL+AC HAGLV +GR +F +M  
Sbjct: 363 TAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTE 422

Query: 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
            Y I P   HY   ID+L RAGK  EA D ID +P KP++ IW  LLA CR++GN ++G 
Sbjct: 423 AYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGE 482

Query: 608 QAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKV 667
            AAE+L +L P ++  Y+LLSNMYA   RW D  R+R+++ ++G+KKEPGCS IE++  +
Sbjct: 483 LAAERLLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGII 542

Query: 668 HVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLA 727
           H F+  D +HP  + +Y  LE ++ ++R  GYVPD   VL ++  ++K+  L  HSEKLA
Sbjct: 543 HEFVAADRSHPMNKEIYSKLENVLTDLRNAGYVPDVTEVLVEVTEEEKQKVLYWHSEKLA 602

Query: 728 VAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCG 787
           V F L+       +R++KNLR+C DCHNA K +SK+ GRE++VRD  RFHHFR G CSC 
Sbjct: 603 VTFALLTSESNVIIRIVKNLRMCLDCHNAIKLISKLYGREVIVRDRTRFHHFRHGSCSCK 662

Query: 788 DYW 790
           DYW
Sbjct: 663 DYW 665



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 123/425 (28%), Positives = 194/425 (45%), Gaps = 60/425 (14%)

Query: 115 VFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHC 174
           V +NA+I+ ++ +     +   F DM R        T+ SVLSA     ++    MQ+H 
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGK-GKDLLLGMQVHK 185

Query: 175 TVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTG 234
            V++SG      V NAL+ +Y +C           M AA  +F+ M  R   SWT++++G
Sbjct: 186 RVLESGVLPDQRVENALVDMYAECGD---------MDAAWVLFEGMQMRSMASWTSVISG 236

Query: 235 YVKNDYLDAAREFLDGMSENVGVAWNALISGYVH----REL-----KMLMLRIQLDEFTY 285
            V++  +D AR+  D M E   +AW A+I GYV     R+       M + +++ DEFT 
Sbjct: 237 LVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTM 296

Query: 286 TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFN 345
            SV++ACA  G    G+    Y+ R   K      + V NAL+ +Y KCG +  A D+F 
Sbjct: 297 VSVVTACAQLGALETGEWARIYMGRLGIK----MDVFVGNALIDMYSKCGSIERALDVFK 352

Query: 346 QMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKL 405
            M  RD  +W AI                               I GLA NG GEE + +
Sbjct: 353 DMHNRDKFTWTAI-------------------------------ILGLAVNGRGEEAIDM 381

Query: 406 FSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN--ALITMY 463
           F +M      P +  F G +T+C   G ++ GR+    +  + Y+ S +  +   LI + 
Sbjct: 382 FYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEA-YNISPTVVHYGCLIDVL 440

Query: 464 ARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF 522
            R G ++ A    + MP   +S  W  ++A+   +GN        E++L+  + PD  T 
Sbjct: 441 GRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLE--LDPDNSTA 498

Query: 523 LTVLS 527
             +LS
Sbjct: 499 YILLS 503



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 161/349 (46%), Gaps = 44/349 (12%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y S L  C     +   L   VH  ++ SG  P + + N L+D+Y +   +  A  LF+ 
Sbjct: 164 YVSVLSACGKGKDLL--LGMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEG 221

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +    + + T++I+    S  V  AR++F+  P   RDT+ + AMI  Y        A+E
Sbjct: 222 MQMRSMASWTSVISGLVRSGQVDRARDLFDHMP--ERDTIAWTAMIDGYVQVGRFRDALE 279

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
            FR M+   V+ D FT  SV++A A L   E  +  +++  + + G  +   V NALI +
Sbjct: 280 TFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIY--MGRLGIKMDVFVGNALIDM 337

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           Y KC S         +  A  VF +M  RD+ +WT ++ G   N   + A +        
Sbjct: 338 YSKCGS---------IERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMF------ 382

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA- 313
                        +R L+ L      DE T+  V++AC ++GL   G++   +L  TEA 
Sbjct: 383 -------------YRMLRALQ---TPDEVTFVGVLTACTHAGLVDKGREF--FLSMTEAY 424

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
             +P  ++     L+ +  + GK+ EA D  ++MP + +   W  +L++
Sbjct: 425 NISP--TVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLAS 471



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 90/405 (22%), Positives = 170/405 (41%), Gaps = 51/405 (12%)

Query: 241 LDAAREFLDGMSENVGVAWNALISGYVHRE-----LKMLMLRIQLDEFTYTSVIS----- 290
           L  AR  LDG+    G A ++ +SG+   E     ++ML    + D +T+ S++      
Sbjct: 5   LSRARSLLDGIPHRRGRAASSSVSGHGAEEAVAGYVRMLAGGARPDAYTFPSLLKAAAAA 64

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM--- 347
             A      +G  +HA+++    K   E +    ++L+ +Y   G    AR +       
Sbjct: 65  RGAAVAAASVGGAIHAHVV----KFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLA 120

Query: 348 -----PERDLVSWNAILSAYVSAGLID-EAKSLFEAMRERNLLSWTVMISGLAQNGYGEE 401
                P    V WNA++S +  +G  +    S  + +R   + +    +S L+  G G++
Sbjct: 121 TGGGAP----VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKD 176

Query: 402 ---GLKLFSQMRLEGFKP---CDYAFAGAITSCAGLGA---LENGRQLHAQLVHSGYDSS 452
              G+++  ++   G  P    + A       C  + A   L  G Q+           S
Sbjct: 177 LLLGMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMR----------S 226

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           +++  ++I+   R G V+ A  +F+ MP  D+++W AMI    Q G    A+E +  M  
Sbjct: 227 MASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQI 286

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
             +  D  T ++V++AC   G ++ G  +     G  GI          ID+  + G   
Sbjct: 287 CKVRADEFTMVSVVTACAQLGALETG-EWARIYMGRLGIKMDVFVGNALIDMYSKCGSIE 345

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
            A DV   +  +     W A++ G  ++G    G +A +  ++++
Sbjct: 346 RALDVFKDMHNRDKFT-WTAIILGLAVNGR---GEEAIDMFYRML 386



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 122/295 (41%), Gaps = 28/295 (9%)

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI-- 425
           +  A+SL + +  R   + +  +SG       EE +  + +M   G +P  Y F   +  
Sbjct: 5   LSRARSLLDGIPHRRGRAASSSVSGHG----AEEAVAGYVRMLAGGARPDAYTFPSLLKA 60

Query: 426 ---TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
                 A + A   G  +HA +V  G +S+  A ++LI MYA  G   AA  V       
Sbjct: 61  AAAARGAAVAAASVGGAIHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLA 120

Query: 483 DS----VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG 538
                 V WNA+I+   + G    +   +  M++   +   +T+++VLSAC     +  G
Sbjct: 121 TGGGAPVMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLG 180

Query: 539 ----RRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
               +R  E+     G+ P +      +D+    G    A  + + +  +  A  W +++
Sbjct: 181 MQVHKRVLES-----GVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMAS-WTSVI 234

Query: 595 AGCRIHGNIDLGIQAAEQLFQLMPHHAG-TYVLLSNMYANLGRWDDAARVRKLMR 648
           +G    G +D     A  LF  MP      +  + + Y  +GR+ DA    + M+
Sbjct: 235 SGLVRSGQVD----RARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQ 285


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 255/730 (34%), Positives = 399/730 (54%), Gaps = 79/730 (10%)

Query: 65  KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
           K +++R    +  + D++   +L+  Y+   +++ A+ +F +  +  R    +NAMI AY
Sbjct: 141 KAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFER--MSGRSVSSWNAMIAAY 198

Query: 125 SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA---LALIVEEEKQCMQMHCTVVKSGT 181
           + + +   AI L+ DM   DV+P   TFTSVLSA   L L+     Q  ++H  +   GT
Sbjct: 199 AQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLL----DQGRKIHALISSRGT 251

Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
            L  S+ NAL+++Y +C           +  A ++F  +P RD +SW+ M+  + + D  
Sbjct: 252 ELDLSLQNALLTMYARC---------KCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLF 302

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
           D A EF                        KM +  ++ + +T+ SV+ ACA+ G  R G
Sbjct: 303 DEAIEFYS----------------------KMQLEGVRPNYYTFASVLLACASVGDLRAG 340

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
           + VH  +L    K T                                   LV+  A++  
Sbjct: 341 RAVHDQILGNGYKIT-----------------------------------LVNGTALVDL 365

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC-DYA 420
           Y S G +DEA+SLF+ +  R+   WTV+I G ++ G+    L+L+ +M+     P     
Sbjct: 366 YTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKII 425

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
           ++  I++CA LGA  + RQ H+ +   G  S      +L+ MY+R G +E+A  VF+ M 
Sbjct: 426 YSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMS 485

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
           + D+++W  +IA   +HG    A+ LY++M  EG  P  +TF+ VL AC+HAGL ++G++
Sbjct: 486 SRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQ 545

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
            F ++   Y + P   HY+  IDLL RAG+ S+A+++I+++P +P+   W +LL   RIH
Sbjct: 546 LFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIH 605

Query: 601 GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSW 660
            ++     AA Q+ +L P    +YVLLSN++A  G     A VR  M  RGVKK  G SW
Sbjct: 606 KDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSW 665

Query: 661 IEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALS 720
           IEV +++H F V D +HP  Q ++  L++L  ++++ GYVP+++ VLHD+   +KE  L 
Sbjct: 666 IEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLR 725

Query: 721 THSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFR 780
            HSEKLA+AFGL+    G T+R+   LRIC DCH+A KF+S +  REI+VRD  RFH FR
Sbjct: 726 LHSEKLAIAFGLIATAPGTTLRIFNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKFR 785

Query: 781 DGKCSCGDYW 790
           DG+CSCGDYW
Sbjct: 786 DGQCSCGDYW 795



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 129/559 (23%), Positives = 237/559 (42%), Gaps = 121/559 (21%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R +HA + S G +    + N L+ +Y +   L  A  +F  +P+ D+V+ + +IAA++ 
Sbjct: 239 GRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAE 298

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
           +D       +F++                          AIE +  M+ + V+P+ +TF 
Sbjct: 299 TD-------LFDE--------------------------AIEFYSKMQLEGVRPNYYTFA 325

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           SVL A A  V + +    +H  ++ +G  +      AL+ +Y         +S   +  A
Sbjct: 326 SVLLACA-SVGDLRAGRAVHDQILGNGYKITLVNGTALVDLY---------TSYGSLDEA 375

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           R +FD++  RDE  WT ++ GY K  +     E                    ++RE+K 
Sbjct: 376 RSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLE--------------------LYREMKN 415

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP-TPEFSLPVNNALVTLYW 332
              ++   +  Y+ VISACA+ G F   +Q H+ +   EA     +F L    +LV +Y 
Sbjct: 416 -TTKVPATKIIYSCVISACASLGAFADARQAHSDI---EADGMISDFVLA--TSLVNMYS 469

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           + G +  AR +F++M  RD ++W                               T +I+G
Sbjct: 470 RWGNLESARQVFDKMSSRDTLAW-------------------------------TTLIAG 498

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY--D 450
            A++G     L L+ +M LEG +P +  F   + +C+  G  E G+QL    + S Y   
Sbjct: 499 YAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFIS-IQSDYAMH 557

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQ 509
            +++  + +I + +R G +  A  + N MP   + V+W++++ A   H +  RA     Q
Sbjct: 558 PNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQ 617

Query: 510 MLK-EGILPDRITFLTVLSAC--NHAGLV-------------KEGRRYFETMHGPYGIPP 553
           + K + + P     L+ + A   N AG+              + G  + E     +    
Sbjct: 618 ITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNV 677

Query: 554 GEDHYARFIDLLCRAGKFS 572
           G++ + RF ++     + S
Sbjct: 678 GDNSHPRFQEIFAELQRLS 696



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 157/353 (44%), Gaps = 82/353 (23%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           +AS L  C     + +   R+VH  ++ +G+K        L+D+Y     L  AR+LFD+
Sbjct: 324 FASVLLACASVGDLRA--GRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQ 381

Query: 76  IPQPDIVARTTLIAAYSASDN----VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           I   D    T LI  YS   +    ++L REM N T +     + Y+ +I+A        
Sbjct: 382 IENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPA-TKIIYSCVISAC------- 433

Query: 132 AAIELFRDMRR--DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLN 189
           A++  F D R+   D++ D      VL+                                
Sbjct: 434 ASLGAFADARQAHSDIEADGMISDFVLA-------------------------------T 462

Query: 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD 249
           +L+++Y +  +         + +AR+VFD+M  RD L+WTT++ GY K+           
Sbjct: 463 SLVNMYSRWGN---------LESARQVFDKMSSRDTLAWTTLIAGYAKHG---------- 503

Query: 250 GMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
                 G+A        +++E++  +   +  E T+  V+ AC+++GL   GKQ+    +
Sbjct: 504 ----EHGLALG------LYKEME--LEGAEPSELTFMVVLYACSHAGLQEQGKQL---FI 548

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
             ++      ++   + ++ L  + G++++A ++ N MP E + V+W+++L A
Sbjct: 549 SIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGA 601


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/602 (39%), Positives = 360/602 (59%), Gaps = 67/602 (11%)

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           N L+++Y KC S         +  AR+VFD+MPERD ++WTT+++GY ++D     R F 
Sbjct: 90  NTLLNMYAKCGS---------LEEARKVFDKMPERDFVTWTTLISGYSQHD-----RPF- 134

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
                +  V +N           +ML      +EFT +SVI A A       G Q+H + 
Sbjct: 135 -----DALVLFN-----------QMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFC 178

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
           +    K   + ++ V +AL+ LY + G +++A+ +F+ +  R+ VSWNA           
Sbjct: 179 V----KCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNA----------- 223

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
                               +I+G A+    E+ L+LF  M  EGF+P  +++A    +C
Sbjct: 224 --------------------LIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGAC 263

Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
           +  G LE G+ +HA ++ SG      AGN L+ MYA+ G +  A  +F+ +   D VSWN
Sbjct: 264 SSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWN 323

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP 548
           +++ A  QHG G  A+  +E+M + GI P+ I+FL+VL+AC+H+GL+ EG  Y+E M   
Sbjct: 324 SLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD 383

Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
            GI     HY   +DLL RAG  + A   I+ +P +P+A IW+ALL  CR+H N +LG  
Sbjct: 384 -GIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAY 442

Query: 609 AAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVH 668
           AAE +F+L P   G +V+L N+YA+ GRW+DAARVRK M++ GVKKEP CSW+E++N +H
Sbjct: 443 AAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIH 502

Query: 669 VFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAV 728
           +F+ +D  HP+ + + +  E+++ ++++LGYVPDT  V+  ++  ++E  L  HSEK+A+
Sbjct: 503 MFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIAL 562

Query: 729 AFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788
           AF L+  P G+T+ + KN+R+CGDCH+A K  SK VGREI+VRD  RFHHF+DG CSC D
Sbjct: 563 AFALLNTPPGSTIHIKKNIRVCGDCHSAIKLASKAVGREIIVRDTNRFHHFKDGACSCKD 622

Query: 789 YW 790
           YW
Sbjct: 623 YW 624



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 132/504 (26%), Positives = 212/504 (42%), Gaps = 110/504 (21%)

Query: 8   YIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLV 67
           YI      Y + L+ C     +T    R VH H+I S F+    + N L+++Y K   L 
Sbjct: 46  YIPVDRRFYNTLLKKCTVFKLLTQ--GRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLE 103

Query: 68  YARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHN 127
            AR +FD++P+ D V  TTLI+ YS  D                     ++A++      
Sbjct: 104 EARKVFDKMPERDFVTWTTLISGYSQHDRP-------------------FDALV------ 138

Query: 128 SNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM--QMHCTVVKSGTGLFT 185
                   LF  M R    P+ FT +SV+ A A    E + C   Q+H   VK G     
Sbjct: 139 --------LFNQMLRFGFSPNEFTLSSVIKAAA---AERRGCCGHQLHGFCVKCGFDSNV 187

Query: 186 SVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245
            V +AL+ +Y +           LM  A+ VFD +  R+++SW  ++ G+ +    + A 
Sbjct: 188 HVGSALLDLYTR---------YGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKAL 238

Query: 246 EFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
           E   GM          L  G+            +   F+Y S+  AC+++G    GK VH
Sbjct: 239 ELFQGM----------LREGF------------RPSHFSYASLFGACSSTGFLEQGKWVH 276

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365
           AY++++  K          N L+ +Y K G +++AR IF+++ +RD+VSWN++L+AY   
Sbjct: 277 AYMIKSGEK----LVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQH 332

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425
           G  +EA   FE                               +MR  G +P + +F   +
Sbjct: 333 GFGNEAVCWFE-------------------------------EMRRGGIRPNEISFLSVL 361

Query: 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV 485
           T+C+  G L+ G   +  +   G          ++ +  R G +  A      MP   + 
Sbjct: 362 TACSHSGLLDEGWHYYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTA 421

Query: 486 S-WNAMIAALGQHGN---GARAIE 505
           + W A++ A   H N   GA A E
Sbjct: 422 AIWKALLNACRMHKNTELGAYAAE 445



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 159/328 (48%), Gaps = 45/328 (13%)

Query: 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
           I +D   Y +++  C    L   G+ VH +L+++                          
Sbjct: 47  IPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQS-------------------------- 80

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNG 397
                IF      DLV  N +L+ Y   G ++EA+ +F+ M ER+ ++WT +ISG +Q+ 
Sbjct: 81  -----IFRH----DLVMNNTLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHD 131

Query: 398 YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN 457
              + L LF+QM   GF P ++  +  I + A       G QLH   V  G+DS++  G+
Sbjct: 132 RPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGS 191

Query: 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
           AL+ +Y R G+++ A  VF+ + + + VSWNA+IA   +     +A+EL++ ML+EG  P
Sbjct: 192 ALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRP 251

Query: 518 DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA----RFIDLLCRAGKFSE 573
              ++ ++  AC+  G +++G+     +H  Y I  GE   A      +D+  ++G   +
Sbjct: 252 SHFSYASLFGACSSTGFLEQGK----WVHA-YMIKSGEKLVAFAGNTLLDMYAKSGSIHD 306

Query: 574 AKDVIDSLPFKPSAPIWEALLAGCRIHG 601
           A+ + D L  K     W +LL     HG
Sbjct: 307 ARKIFDRLA-KRDVVSWNSLLTAYAQHG 333



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 103/232 (44%), Gaps = 33/232 (14%)

Query: 400 EEGLKLFSQMRLEG-FKPCDYAFAGAI-TSCAGLGALENGRQLHAQLVHSGYDSSLSAGN 457
           +E LK F    LEG + P D  F   +   C     L  GR +H  L+ S +   L   N
Sbjct: 32  DESLK-FPSNDLEGSYIPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNN 90

Query: 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
            L+ MYA+CG +E A  VF+ MP  D V+W  +I+   QH     A+ L+ QML+ G  P
Sbjct: 91  TLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSP 150

Query: 518 DRITFLTVLSA--------CNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR----FIDLL 565
           +  T  +V+ A        C H             +HG + +  G D         +DL 
Sbjct: 151 NEFTLSSVIKAAAAERRGCCGH------------QLHG-FCVKCGFDSNVHVGSALLDLY 197

Query: 566 CRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
            R G   +A+ V D+L  +     W AL+AG   H     G + A +LFQ M
Sbjct: 198 TRYGLMDDAQLVFDALESRNDVS-WNALIAG---HAR-RCGTEKALELFQGM 244


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/637 (37%), Positives = 357/637 (56%), Gaps = 28/637 (4%)

Query: 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS 227
           Q +Q+H  ++K+       VL  L+     C      SS + +  AR VFDE+P  D   
Sbjct: 18  QIIQIHALIIKTSLDGNNFVLAKLLRRLFAC------SSANDLLYARSVFDEIPSPDTFI 71

Query: 228 WTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV------------HRELKMLM 275
           W TM+  Y+ +     +      M     +  ++     V             ++L   +
Sbjct: 72  WNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQV 131

Query: 276 LRIQL--DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
           L+I L  D F  T++I   A  G   + + +    L   A P     L   N L+  Y +
Sbjct: 132 LKIGLGSDLFVETALIEMYAKFGDIEIARNI----LDEMAHP----DLVPYNVLLAEYVR 183

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
            G++N A D+F++MPERDLVSWN ++  + S G +  AK LF+   ER+L+SW+ MI+  
Sbjct: 184 VGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAY 243

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL 453
           A+     E L+LF +M+L    P        +++C  +GAL  G+ +H  +  +  +  L
Sbjct: 244 AKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDL 303

Query: 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE 513
             G +L+ MYA+CG ++ +  VFN M N D  +W+AMI  L  HG G  A++ + +M+ E
Sbjct: 304 KLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISE 363

Query: 514 GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE 573
            I P+ +TF+ VLSAC+H GLV EG  YF +M   Y + P  +HY   +D+L RAG+  E
Sbjct: 364 DIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQE 423

Query: 574 AKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN 633
           A ++I S+PF P A +W ALL  CRI+ N+++  +A   L +L PH  G YVLLSN+Y+ 
Sbjct: 424 AMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQ 483

Query: 634 LGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLE 693
              WD    VR++M++  ++K PG S IEVDN VH F+  D +HPE++ + + L ++   
Sbjct: 484 AKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEITAR 543

Query: 694 MRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDC 753
           ++  GY P T  VL D +  +KE AL+ HSEKLA+AFGL+    G+T+R++KNLR+C DC
Sbjct: 544 LKANGYAPLTASVLQDFDEKEKENALAHHSEKLAIAFGLLSTAPGSTIRIVKNLRVCDDC 603

Query: 754 HNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           H A K +S+   R I+VRD  RFHHF +G CSC DYW
Sbjct: 604 HIAIKLISRTYKRRIIVRDRNRFHHFVNGSCSCKDYW 640



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 131/514 (25%), Positives = 219/514 (42%), Gaps = 108/514 (21%)

Query: 37  VHAHMISSGFKPREHIINRLID--IYCKSLK-LVYARTLFDEIPQPDIVARTTLIAAYSA 93
           +HA +I +       ++ +L+     C S   L+YAR++FDEIP PD     T+I AY  
Sbjct: 22  IHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYLN 81

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP-DNFTF 152
           S                                  N   ++ LF  MR  +  P D+++ 
Sbjct: 82  S---------------------------------QNPQESMSLFFQMRHQECIPIDSYSL 108

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC------------VS 200
           + V+ A   + ++     ++H  V+K G G    V  ALI +Y K             ++
Sbjct: 109 SLVIQACGRL-KDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMA 167

Query: 201 SPFVSSRSLMGA----------ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDG 250
            P +   +++ A          A  +FD MPERD +SW TM+ G+     +  A++  D 
Sbjct: 168 HPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDR 227

Query: 251 MSENVGVAWNALISGYVH----RELKMLMLRIQL-----DEFTYTSVISACANSGLFRLG 301
             E   ++W+++I+ Y       E   L   +QL     D+ T  SV+SAC + G   +G
Sbjct: 228 TCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMG 287

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
           K +H  + R       E  L +  +LV +Y KCG ++ +  +FN M  RD+ +W+A    
Sbjct: 288 KMIHECIERNRI----EIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSA---- 339

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
                                      MI GLA +G+GE  L  FS+M  E  KP D  F
Sbjct: 340 ---------------------------MIMGLANHGFGELALDHFSKMISEDIKPNDVTF 372

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSS--LSAGNALITMYARCGVVEAANCVFNTM 479
            G +++C+ +G ++ G      +    YD S  +     ++ +  R G ++ A  +  +M
Sbjct: 373 IGVLSACSHIGLVDEGWTYFTSM-SKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSM 431

Query: 480 PNV-DSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           P   D++ W A++ A   + N   A E    +L+
Sbjct: 432 PFAPDAIVWRALLGACRIYKNVEIAEEATVNLLE 465



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 160/385 (41%), Gaps = 76/385 (19%)

Query: 21  QLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPD 80
           +L DP N       + +H  ++  G      +   LI++Y K   +  AR + DE+  PD
Sbjct: 117 RLKDPGN------GQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPD 170

Query: 81  IVARTTLIAAYSASDNVKLAREMFNKTPLK-----------------------------M 111
           +V    L+A Y     + LA ++F++ P +                              
Sbjct: 171 LVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCE 230

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ 171
           RD + +++MI AY+     + A+ LF +M+  +V PD  T  SVLSA   +       M 
Sbjct: 231 RDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKM- 289

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H  + ++   +   +  +L+ +Y KC           +  + RVF+ M  RD  +W+ M
Sbjct: 290 IHECIERNRIEIDLKLGTSLVDMYAKCGD---------IDNSLRVFNGMNNRDVFAWSAM 340

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           + G   + + + A   LD  S                   KM+   I+ ++ T+  V+SA
Sbjct: 341 IMGLANHGFGELA---LDHFS-------------------KMISEDIKPNDVTFIGVLSA 378

Query: 292 CANSGLFRLGKQVHAYLLRT-EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-E 349
           C++ GL   G      + +  +  P  E        +V +  + G++ EA ++   MP  
Sbjct: 379 CSHIGLVDEGWTYFTSMSKVYDVSPKIEHY----GCVVDILGRAGRLQEAMELIKSMPFA 434

Query: 350 RDLVSWNAILSA---YVSAGLIDEA 371
            D + W A+L A   Y +  + +EA
Sbjct: 435 PDAIVWRALLGACRIYKNVEIAEEA 459


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 263/771 (34%), Positives = 417/771 (54%), Gaps = 94/771 (12%)

Query: 35  RSVHAHMISSG--FKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           + +HAHM+ +G  F P                 L YA  +FD+IP+P++    TLI A++
Sbjct: 47  KQLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFA 106

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
           +S             P  ++  + +                I++  + +R    P+++TF
Sbjct: 107 SS-------------PKPIQGLLVF----------------IQMLHESQR---FPNSYTF 134

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKS--GTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
             V+ A A  V        +H  V+K+  G+ LF S  N+LI  Y         SS   +
Sbjct: 135 PFVIKA-ATEVSSLLAGQAIHGMVMKASFGSDLFIS--NSLIHFY---------SSLGDL 182

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH-- 268
            +A  VF ++ E+D                                V+WN++ISG+V   
Sbjct: 183 DSAYLVFSKIVEKDI-------------------------------VSWNSMISGFVQGG 211

Query: 269 --RELKMLMLRIQLDE-----FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
              E   L  R++++       T   V+SACA       G+    Y+ R       + +L
Sbjct: 212 SPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGI----DINL 267

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
            ++NA++ +Y KCG + +AR +F++M E+D+VSW  ++  Y   G  D A+ +F+ M   
Sbjct: 268 ILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPRE 327

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRL-EGFKPCDYAFAGAITSCAGLGALENGRQL 440
           ++ +W  +IS   QNG  +E L +F +++L +  KP +   A  + +CA LGA++ G  +
Sbjct: 328 DITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWI 387

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           H  +   G   +     +LI MY++CG +E A  VF ++   D   W+AMIA L  HG+G
Sbjct: 388 HVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHG 447

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
             AI+L+ +M +  + P+ +TF  +L AC+H+GLV EGR +F  M   YG+ PG  HYA 
Sbjct: 448 RAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYAC 507

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
            +D+L RAG   EA ++I+ +P  PSA +W ALL  CRI+GN++L   A  +L +   ++
Sbjct: 508 MVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETDSNN 567

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEA 680
            G YVLLSN+YA  G+WD  +R+R+ M+  G++KEPGCS IEV+  +H FLV D +HP +
Sbjct: 568 HGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGDNSHPLS 627

Query: 681 QAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESD-QKEYALSTHSEKLAVAFGLMKLPGGA 739
             +Y  L+++V  ++  GYV D   +L  +E +  KE+AL+ HSEKLA+A+GL+++    
Sbjct: 628 TEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEHALNLHSEKLAIAYGLIRMEPSQ 687

Query: 740 TVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            +R++KNLR+CGDCH+  K +SK+  R+I++RD  RFHHF  G CSC DYW
Sbjct: 688 PIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFHHFSGGNCSCMDYW 738



 Score =  102 bits (255), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 168/381 (44%), Gaps = 61/381 (16%)

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG-----KVN 338
           T   +I  CAN       KQ+HA++LRT     P        +   L+  C       ++
Sbjct: 32  TVPILIDKCANKKHL---KQLHAHMLRTGLFFDPP-------SATKLFTACALSSPSSLD 81

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGY 398
            A  +F+Q+P  +L +WN ++ A+ S+      K +                        
Sbjct: 82  YACKVFDQIPRPNLYTWNTLIRAFASS-----PKPI------------------------ 112

Query: 399 GEEGLKLFSQMRLEGFK-PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN 457
             +GL +F QM  E  + P  Y F   I +   + +L  G+ +H  ++ + + S L   N
Sbjct: 113 --QGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISN 170

Query: 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
           +LI  Y+  G +++A  VF+ +   D VSWN+MI+   Q G+   A++L+++M  E   P
Sbjct: 171 SLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARP 230

Query: 518 DRITFLTVLSACNHAGLVKEGR---RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
           +R+T + VLSAC     ++ GR    Y E      GI          +D+  + G   +A
Sbjct: 231 NRVTMVGVLSACAKRIDLEFGRWACDYIER----NGIDINLILSNAMLDMYVKCGSLEDA 286

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT-YVLLSNMYAN 633
           + + D +  K     W  ++ G    G+ D    AA ++F +MP    T +  L + Y  
Sbjct: 287 RRLFDKMEEKDIVS-WTTMIDGYAKVGDYD----AARRVFDVMPREDITAWNALISSYQQ 341

Query: 634 LGRWDDA-ARVRKLMRDRGVK 653
            G+  +A A  R+L  ++  K
Sbjct: 342 NGKPKEALAIFRELQLNKNTK 362


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/653 (37%), Positives = 361/653 (55%), Gaps = 69/653 (10%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           ++H   +K+ +   +SVL+ L  +Y+ C         + +  ARR+FDE+P    + W  
Sbjct: 29  KIHQHFLKNTSNADSSVLHKLTRLYLSC---------NQVVLARRLFDEIPNPSVILWNQ 79

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++  Y                      AWN    G +     ML L ++ +++TY  V+ 
Sbjct: 80  IIRAY----------------------AWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLK 117

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTP-EFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
           AC+       G ++H++     AK    E  + V  ALV  Y KCG + EA+ +F+ M  
Sbjct: 118 ACSGLLAIEDGVEIHSH-----AKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSH 172

Query: 350 RDLVSWNAILSAYVSAGLIDEA--------------------------------KSLFEA 377
           RD+V+WNA+++     GL D+A                                + +F+ 
Sbjct: 173 RDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDV 232

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
           M  RN +SW+ MI G   +   +E L +F  M+L G  P      G + +C+ L AL++G
Sbjct: 233 MGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG 292

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
              H  L+  G+ +     NALI MY++CG +  A  VFN M   D VSWNAMI   G H
Sbjct: 293 FCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIH 352

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
           G G  A+ L+  +L  G+ PD ITF+ +LS+C+H+GLV EGR +F+ M   + I P  +H
Sbjct: 353 GLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEH 412

Query: 558 YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
               +D+L RAG   EA   I ++PF+P   IW ALL+ CRIH NI+LG + ++++  L 
Sbjct: 413 CICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLG 472

Query: 618 PHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAH 677
           P   G +VLLSN+Y+  GRWDDAA +R   +D G+KK PGCSWIE++  VH F+  D +H
Sbjct: 473 PESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSH 532

Query: 678 PEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPG 737
            +   + + LE+L++EM++LGY  +  FV  D+E ++KE  L  HSEKLA+AFG++ L  
Sbjct: 533 LQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKA 592

Query: 738 GATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           G  + V KNLR+CGDCH A KFM+ +  REI VRD  RFHHF++G C+CGD+W
Sbjct: 593 GRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 645



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 136/545 (24%), Positives = 217/545 (39%), Gaps = 131/545 (24%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF 73
           N Y   L+ C     +T   A+ +H H + +       ++++L  +Y    ++V AR LF
Sbjct: 9   NNYLHLLEACIQSKSLTE--AKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLF 66

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
           DEIP P +                                 + +N +I AY+ N     A
Sbjct: 67  DEIPNPSV---------------------------------ILWNQIIRAYAWNGPFDGA 93

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           I+L+  M    V+P+ +T+  VL A + L+  E+   +  H  +    + +F  V  AL+
Sbjct: 94  IDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVF--VCTALV 151

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDA--------- 243
             Y KC          ++  A+R+F  M  RD ++W  M+ G       D          
Sbjct: 152 DFYAKC---------GILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQ 202

Query: 244 -----------------------AREFLDGMSENVGVAWNALISGYVHRE--------LK 272
                                  AR+  D M     V+W+A+I GYV  +         +
Sbjct: 203 EEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFR 262

Query: 273 MLMLR-IQLDEFTYTSVISACANSGLFRLGKQVHAYLL-RTEAKPTPEFSLPVNNALVTL 330
           M+ L  I  D  T   V+ AC++    + G   H YL+ R  A  T      + NAL+ +
Sbjct: 263 MMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDT-----LICNALIDM 317

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y KCGK++ AR++FN+M   D+VSWNA                               MI
Sbjct: 318 YSKCGKISFAREVFNRMDRHDIVSWNA-------------------------------MI 346

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR-QLHAQLVHSGY 449
            G   +G G E L LF  +   G KP D  F   ++SC+  G +  GR    A       
Sbjct: 347 IGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSI 406

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYE 508
              +     ++ +  R G+++ A+     MP   D   W+A+++A   H N    IEL E
Sbjct: 407 VPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKN----IELGE 462

Query: 509 QMLKE 513
           ++ K+
Sbjct: 463 EVSKK 467



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 2/189 (1%)

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           + +C    +L   +++H   + +  ++  S  + L  +Y  C  V  A  +F+ +PN   
Sbjct: 15  LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSV 74

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
           + WN +I A   +G    AI+LY  ML  G+ P++ T+  VL AC+    +++G     +
Sbjct: 75  ILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE-IHS 133

Query: 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
               +G+          +D   + G   EA+ +  S+  +     W A++AGC ++G  D
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVA-WNAMIAGCSLYGLCD 192

Query: 605 LGIQAAEQL 613
             +Q   Q+
Sbjct: 193 DAVQLIMQM 201


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 265/762 (34%), Positives = 389/762 (51%), Gaps = 107/762 (14%)

Query: 33   LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
            L + +H  ++ SG      + N LI++Y K+  +  ART+F ++ + D+V+         
Sbjct: 924  LGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVS--------- 974

Query: 93   ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                    +N MI+  + +     ++ +F D+ R  + PD FT 
Sbjct: 975  ------------------------WNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTV 1010

Query: 153  TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
             SVL A + +        Q+H   +K+G  L + V   LI VY K            M  
Sbjct: 1011 ASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKS---------GKMEE 1061

Query: 213  ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
            A  +F      D  SW  MM GY+                          +SG   + L+
Sbjct: 1062 AEFLFVNQDGFDLASWNAMMHGYI--------------------------VSGDFPKALR 1095

Query: 273  MLMLRIQLDEFT--YTSVISACANSGLFRL--GKQVHAYLLRTEAKPTPEFSLPVNNALV 328
            + +L  +  E     T   +A A  GL  L  GKQ+ A +++        F+L       
Sbjct: 1096 LYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRG------FNL------- 1142

Query: 329  TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV 388
                                  DL   + +L  Y+  G ++ A+ +F  +   + ++WT 
Sbjct: 1143 ----------------------DLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTT 1180

Query: 389  MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG 448
            MISG  +NG  E  L  +  MRL   +P +Y FA  + +C+ L ALE GRQ+HA  V   
Sbjct: 1181 MISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLN 1240

Query: 449  YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
                     +L+ MYA+CG +E A  +F         SWNAMI  L QHGN   A++ +E
Sbjct: 1241 CAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFE 1300

Query: 509  QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568
            +M   G+ PDR+TF+ VLSAC+H+GLV E    F +M   YGI P  +HY+  +D L RA
Sbjct: 1301 EMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRA 1360

Query: 569  GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628
            G+  EA+ VI S+PF+ SA ++  LL  CR+  + + G + AE+L  L P  +  YVLLS
Sbjct: 1361 GRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLS 1420

Query: 629  NMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLE 688
            N+YA   +W++ A  R +MR   VKK+PG SW+++ NKVH+F+  D +H E   +Y  +E
Sbjct: 1421 NVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVE 1480

Query: 689  QLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLR 748
             ++  +R+ GY+PDT F L D+E + KE +L  HSEKLA+A+GLMK P   T+RV+KNLR
Sbjct: 1481 YIMKRIREEGYLPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLR 1540

Query: 749  ICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            +CGDCHNA K++SKV  RE+V+RD  RFHHFR G CSCGDYW
Sbjct: 1541 VCGDCHNAIKYISKVFEREVVLRDANRFHHFRSGVCSCGDYW 1582



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 142/588 (24%), Positives = 245/588 (41%), Gaps = 96/588 (16%)

Query: 78   QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
            Q D+     L+  Y+    ++ AR +F+   + +RD V +N M+ AY      + A+ LF
Sbjct: 759  QWDVFVAGALVNIYAKFGRIREARVLFDG--MGLRDVVLWNVMMKAYVDTGLEYEALLLF 816

Query: 138  RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKS-GTGLF------------ 184
             +  R  ++PD+ T    L  LA +V+ ++  ++     +K+ GT LF            
Sbjct: 817  SEFNRTGLRPDDVT----LCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDDGSDVI 872

Query: 185  ------------------TSVLNALISVYVKCVSSPFVSSRSLMGAAR-----RVFDEMP 221
                                    +I+  V C    FV   S++         +    + 
Sbjct: 873  AWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIV 932

Query: 222  ERDELSWTT-----MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK---- 272
             R  L         ++  YVK   +  AR     M+E   V+WN +ISG     L+    
Sbjct: 933  VRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSV 992

Query: 273  ---MLMLRIQL--DEFTYTSVISACAN-SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
               + +LR  L  D+FT  SV+ AC++  G   L  Q+HA  +    K        V+  
Sbjct: 993  GMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAM----KAGVVLDSFVSTT 1048

Query: 327  LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
            L+ +Y K GK+ EA  +F      DL SWNA++  Y+ +G   +A               
Sbjct: 1049 LIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKA--------------- 1093

Query: 387  TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
                            L+L+  M+  G +      A A  +  GL  L+ G+Q+ A +V 
Sbjct: 1094 ----------------LRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVK 1137

Query: 447  SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
             G++  L   + ++ MY +CG +E+A  +FN +P+ D V+W  MI+   ++G    A+  
Sbjct: 1138 RGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFT 1197

Query: 507  YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR-YFETMHGPYGIPPGEDHYARFIDLL 565
            Y  M    + PD  TF T++ AC+    +++GR+ +  T+       P        +D+ 
Sbjct: 1198 YHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFV--MTSLVDMY 1255

Query: 566  CRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
             + G   +A+ +         A  W A++ G   HGN +  +Q  E++
Sbjct: 1256 AKCGNIEDARGLFKRTNTSRIAS-WNAMIVGLAQHGNAEEALQFFEEM 1302



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 202/486 (41%), Gaps = 99/486 (20%)

Query: 173  HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE--RDELSWTT 230
            H  ++ SG      + N LI++Y KC S         + +AR++FD  P+  RD ++W  
Sbjct: 649  HARILTSGHHPDRFLTNNLITMYSKCGS---------LSSARKLFDTTPDTSRDLVTWNA 699

Query: 231  MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
            +++ +      D AR   DG               ++ R L+     +     T   V  
Sbjct: 700  ILSAHA-----DKAR---DGF--------------HLFRLLRRSF--VSATRHTLAPVFK 735

Query: 291  ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
             C  S      + +H Y +    K   ++ + V  ALV +Y K G++ EAR +F+ M  R
Sbjct: 736  MCLLSASPSAAESLHGYAV----KIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLR 791

Query: 351  DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL--------------------------- 383
            D+V WN ++ AYV  GL  EA  LF       L                           
Sbjct: 792  DVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQLKQ 851

Query: 384  --------------------LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD-YAFA 422
                                ++W   +S   Q G   E +  F  M +     CD   F 
Sbjct: 852  LKAYGTKLFMYDDDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDM-INSRVACDGLTFV 910

Query: 423  GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
              ++  AGL  LE G+Q+H  +V SG D  +S GN LI MY + G V  A  VF  M  V
Sbjct: 911  VMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEV 970

Query: 483  DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
            D VSWN MI+     G    ++ ++  +L+ G+LPD+ T  +VL AC+  G    G  + 
Sbjct: 971  DLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLG----GGCHL 1026

Query: 543  ETMHGPYGIPPGE--DHYAR--FIDLLCRAGKFSEAKDV-IDSLPFKPSAPIWEALLAGC 597
             T      +  G   D +     ID+  ++GK  EA+ + ++   F  ++  W A++ G 
Sbjct: 1027 ATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLAS--WNAMMHGY 1084

Query: 598  RIHGNI 603
             + G+ 
Sbjct: 1085 IVSGDF 1090



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 118/492 (23%), Positives = 190/492 (38%), Gaps = 99/492 (20%)

Query: 257  VAWNALISGYVHRE---------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY 307
            +AWN  +S ++ R          + M+  R+  D  T+  ++S  A      LGKQ+H  
Sbjct: 872  IAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGI 931

Query: 308  LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367
            ++R+         + V N L+ +Y K G V+ AR +F QM E DLVSWN           
Sbjct: 932  VVRSGLDQV----VSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWN----------- 976

Query: 368  IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
                                 MISG A +G  E  + +F  +   G  P  +  A  + +
Sbjct: 977  --------------------TMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRA 1016

Query: 428  CAGL-GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
            C+ L G      Q+HA  + +G          LI +Y++ G +E A  +F      D  S
Sbjct: 1017 CSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLAS 1076

Query: 487  WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546
            WNAM+      G+  +A+ LY  M + G   ++IT      A      +K+G++  + + 
Sbjct: 1077 WNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQ-IQAVV 1135

Query: 547  GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLG 606
               G        +  +D+  + G+   A+ + + +P  P    W  +++GC  +G  +  
Sbjct: 1136 VKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIP-SPDDVAWTTMISGCVENGQEEHA 1194

Query: 607  -----------IQAAEQLFQLMPH--------------HAGTYVL-----------LSNM 630
                       +Q  E  F  +                HA T  L           L +M
Sbjct: 1195 LFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDM 1254

Query: 631  YANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQL 690
            YA  G  +DA         RG+ K    S I   N + V L     H  A+   ++ E  
Sbjct: 1255 YAKCGNIEDA---------RGLFKRTNTSRIASWNAMIVGLAQ---HGNAEEALQFFE-- 1300

Query: 691  VLEMRKLGYVPD 702
              EM+  G  PD
Sbjct: 1301 --EMKSRGVTPD 1310



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 90/226 (39%), Gaps = 35/226 (15%)

Query: 300 LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAIL 359
           LGK+ HA +L +   P    +    N L+T+Y KCG ++ AR +F+  P+          
Sbjct: 644 LGKRAHARILTSGHHPDRFLT----NNLITMYSKCGSLSSARKLFDTTPDT--------- 690

Query: 360 SAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY 419
                                R+L++W  ++S  A      +G  LF  +R        +
Sbjct: 691 --------------------SRDLVTWNAILSAHADKA--RDGFHLFRLLRRSFVSATRH 728

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
             A     C    +      LH   V  G    +    AL+ +YA+ G +  A  +F+ M
Sbjct: 729 TLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGM 788

Query: 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTV 525
              D V WN M+ A    G    A+ L+ +  + G+ PD +T  T+
Sbjct: 789 GLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTL 834


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/618 (38%), Positives = 350/618 (56%), Gaps = 66/618 (10%)

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +  AR+VFDE+PER+ +    M+  YV N +      + +G+       +  + S +V  
Sbjct: 91  VATARKVFDEIPERNVIIINVMIRSYVNNGF------YREGIQ-----VFGTMCSCHV-- 137

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
                    + D +T+  V+ AC+ SG   +GK++H    +     T    L V N LV+
Sbjct: 138 ---------KPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSST----LFVGNGLVS 184

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA------------------ 371
           +Y KCG ++EAR + ++M  RD+VSWN++++ Y      D+A                  
Sbjct: 185 MYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGT 244

Query: 372 -------------------KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
                              K +F  M +++L+SW VMI    +N    E ++L+S M  +
Sbjct: 245 MASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEAD 304

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
           GF+P   +    + +C    AL  G+++H  +       +L   NALI MYA+CG ++ A
Sbjct: 305 GFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRA 364

Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
             VF  M + D VSW AMI+A G  G G  A+ L+ +M   G++PD I F+T L+AC+HA
Sbjct: 365 RDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHA 424

Query: 533 GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592
           GL++EGR  F+ M   Y I P  +H A  +DLL RAGK  EA   I  +P +P+  +W A
Sbjct: 425 GLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGA 484

Query: 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           LL  CR+H N D+G+ AA++LFQL P  +G YVLLSN+YA  GRW++   +R +M+ +G+
Sbjct: 485 LLGACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGL 544

Query: 653 KKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMES 712
           KK PG S +EV+  +H FLV D +HP++  +Y+ L+ LV +M++LGYVPD++  LHD+E 
Sbjct: 545 KKNPGASNVEVNRIIHTFLVGDRSHPQSAEIYRELDVLVKKMKELGYVPDSESALHDVEE 604

Query: 713 DQKEYALSTHSEKLAVAFGLMKLP---GGATVRVLKNLRICGDCHNAFKFMSKVVGREIV 769
           + KE  L+ HSEKLA+ F LM          +R+ KNLRICGDCH A K +S++  REI+
Sbjct: 605 EDKETHLAVHSEKLAIVFALMNTEEEDSNNAIRITKNLRICGDCHVAAKLISQITSREII 664

Query: 770 VRDGKRFHHFRDGKCSCG 787
           +RD  RFH FR G CSC 
Sbjct: 665 IRDTNRFHVFRFGVCSCA 682



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 139/525 (26%), Positives = 227/525 (43%), Gaps = 106/525 (20%)

Query: 30  TSSLARSVHAHMISSGFKPRE--HIINRLIDIY--CKSLKLVYARTLFDEIPQPDIVART 85
           T  +  SV    +     P+E   ++ +++D Y   K+L+ V++R + +++     +   
Sbjct: 21  TRKVTSSVPKLELDQKNSPKETAFMLGQVLDTYPDLKTLRTVHSRIISEDLRYNSSLG-V 79

Query: 86  TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
            L+ AY++  +V  AR++F++ P   R+ +  N MI +Y +N      I++F  M    V
Sbjct: 80  KLMRAYASLKDVATARKVFDEIP--ERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHV 137

Query: 146 KPDNFTFTSVLSALAL---IVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSP 202
           KPD++TF  VL A +    IV  +K    +H +  K G      V N L+S+Y KC    
Sbjct: 138 KPDHYTFPCVLKACSCSGNIVIGKK----IHGSATKVGLSSTLFVGNGLVSMYGKC---- 189

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM----------- 251
                  +  AR V DEM  RD +SW +++ GY +N   D A E    M           
Sbjct: 190 -----GFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGT 244

Query: 252 ------------SENVG--------------VAWNALISGYVHRELKMLMLRI------- 278
                       +ENV               V+WN +I  Y+   + +  + +       
Sbjct: 245 MASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEAD 304

Query: 279 --QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
             + D  + TSV+ AC ++    LGK++H Y+ R +  P    +L + NAL+ +Y KCG 
Sbjct: 305 GFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIP----NLLLENALIDMYAKCGC 360

Query: 337 VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
           ++ ARD+F  M  RD+VSW A++SAY                                 +
Sbjct: 361 LDRARDVFENMKSRDVVSWTAMISAY-------------------------------GFS 389

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV-HSGYDSSLSA 455
           G G + + LFS+M+  G  P   AF   + +C+  G LE GR     +  H      L  
Sbjct: 390 GRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEH 449

Query: 456 GNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
              ++ +  R G V+ A      MP   +   W A++ A   H N
Sbjct: 450 LACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSN 494



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 137/300 (45%), Gaps = 9/300 (3%)

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
           ++ AY S   +  A+ +F+ + ERN++   VMI     NG+  EG+++F  M     KP 
Sbjct: 81  LMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPD 140

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
            Y F   + +C+  G +  G+++H      G  S+L  GN L++MY +CG +  A  V +
Sbjct: 141 HYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 200

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKE 537
            M   D VSWN+++A   Q+     A+E+  +M    I  D  T  ++L A ++     E
Sbjct: 201 EMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT--TTE 258

Query: 538 GRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP---FKPSAPIWEALL 594
              Y + M    G       +   I +  +     EA ++   +    F+P A    ++L
Sbjct: 259 NVMYVKDMFFKMG-KKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVL 317

Query: 595 AGCRIHGNIDLG--IQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
             C     + LG  I    +  +L+P+      L+ +MYA  G  D A  V + M+ R V
Sbjct: 318 PACGDTSALSLGKKIHGYIERKKLIPNLLLENALI-DMYAKCGCLDRARDVFENMKSRDV 376



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 89/198 (44%), Gaps = 9/198 (4%)

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
           L+  R +H++++      + S G  L+  YA    V  A  VF+ +P  + +  N MI +
Sbjct: 56  LKTLRTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRS 115

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP---YG 550
              +G     I+++  M    + PD  TF  VL AC+ +G +  G++    +HG     G
Sbjct: 116 YVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKK----IHGSATKVG 171

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
           +          + +  + G  SEA+ V+D +  +     W +L+AG   +   D  ++  
Sbjct: 172 LSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVS-WNSLVAGYAQNQRFDDALEVC 230

Query: 611 EQLFQL-MPHHAGTYVLL 627
            ++  + + H AGT   L
Sbjct: 231 REMESVKISHDAGTMASL 248


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 255/755 (33%), Positives = 416/755 (55%), Gaps = 71/755 (9%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           +H  ++  G+     + N L+  Y +  +L  AR +FDE+ + ++V+ T++I  Y+  D 
Sbjct: 156 IHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDF 215

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
            K A ++F                                FR +R ++V P++ T   V+
Sbjct: 216 AKDAVDLF--------------------------------FRMVRDEEVTPNSVTMVCVI 243

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
           SA A + E+ +   +++  +  SG  +   +++AL+ +Y+KC         + +  A+R+
Sbjct: 244 SACAKL-EDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKC---------NAIDVAKRL 293

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS-ENVGVAWNALISGYVHRELKMLM 275
           FDE    +      M + YV+            G++ E +GV    + SG          
Sbjct: 294 FDEYGASNLDLCNAMASNYVRQ-----------GLTREALGVFNLMMDSG---------- 332

Query: 276 LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG 335
             ++ D  +  S IS+C+       GK  H Y+LR   +        + NAL+ +Y KC 
Sbjct: 333 --VRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDN----ICNALIDMYMKCH 386

Query: 336 KVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQ 395
           + + A  IF++M  + +V+WN+I++ YV  G +D A   FE M E+N++SW  +ISGL Q
Sbjct: 387 RQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQ 446

Query: 396 NGYGEEGLKLFSQMR-LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
               EE +++F  M+  EG            ++C  LGAL+  + ++  +  +G    + 
Sbjct: 447 GSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVR 506

Query: 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
            G  L+ M++RCG  E+A  +FN++ N D  +W A I A+   GN  RAIEL++ M+++G
Sbjct: 507 LGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQG 566

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
           + PD + F+  L+AC+H GLV++G+  F +M   +G+ P + HY   +DLL RAG   EA
Sbjct: 567 LKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEA 626

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL 634
             +I+ +P +P+  IW +LLA CR+ GN+++   AAE++  L P   G+YVLLSN+YA+ 
Sbjct: 627 VQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASA 686

Query: 635 GRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEM 694
           GRW+D A+VR  M+++G++K PG S I++  K H F   D +HPE   +   L+++    
Sbjct: 687 GRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRA 746

Query: 695 RKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCH 754
             LG+VPD   VL D++  +K + LS HSEKLA+A+GL+    G T+R++KNLR+C DCH
Sbjct: 747 SHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCH 806

Query: 755 NAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
           +  KF SKV  REI++RD  RFH+ R GKCSCGD+
Sbjct: 807 SFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDF 841



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 146/559 (26%), Positives = 241/559 (43%), Gaps = 107/559 (19%)

Query: 61  CKSLK--LVYARTLFDEIPQPDIVARTTLIA---AYSASDNVKLAREMFNKTPLKMRDTV 115
           CK++    ++ R+L  +    D+   T L+A        +++  A+E+F  +  +   T 
Sbjct: 42  CKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENS--ESYGTC 99

Query: 116 F-YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHC 174
           F YN++I  Y+ +   + AI LF  M    + PD +TF   LSA A     +   +Q+H 
Sbjct: 100 FMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAK-SRAKGNGIQIHG 158

Query: 175 TVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTG 234
            +VK G      V N+L+  Y +C           + +AR+VFDEM ER+ +SWT+M+ G
Sbjct: 159 LIVKMGYAKDLFVQNSLVHFYAEC---------GELDSARKVFDEMSERNVVSWTSMICG 209

Query: 235 YVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACAN 294
           Y + D+   A +    M  +  V  N++                     T   VISACA 
Sbjct: 210 YARRDFAKDAVDLFFRMVRDEEVTPNSV---------------------TMVCVISACAK 248

Query: 295 SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS 354
                 G++V+A++  +      E +  + +ALV +Y KC  ++ A+ +F++    +L  
Sbjct: 249 LEDLETGEKVYAFIRNSGI----EVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDL 304

Query: 355 WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF 414
            NA+ S YV  GL  EA                               L +F+ M   G 
Sbjct: 305 CNAMASNYVRQGLTREA-------------------------------LGVFNLMMDSGV 333

Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC-------- 466
           +P   +   AI+SC+ L  +  G+  H  ++ +G++S  +  NALI MY +C        
Sbjct: 334 RPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFR 393

Query: 467 -----------------------GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
                                  G V+AA   F TMP  + VSWN +I+ L Q      A
Sbjct: 394 IFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEA 453

Query: 504 IELYEQML-KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562
           IE++  M  +EG+  D +T +++ SAC H G +   +  +  +    GI          +
Sbjct: 454 IEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIE-KNGIQLDVRLGTTLV 512

Query: 563 DLLCRAGKFSEAKDVIDSL 581
           D+  R G    A  + +SL
Sbjct: 513 DMFSRCGDPESAMSIFNSL 531



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 182/394 (46%), Gaps = 60/394 (15%)

Query: 241 LDAAREFLDGMSENVGVA--WNALISGYVH----RELKMLMLR-----IQLDEFTYTSVI 289
           L  A+E  +  SE+ G    +N+LI GY       E  +L LR     I  D++T+   +
Sbjct: 83  LSFAKEVFEN-SESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGL 141

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
           SACA S     G Q+H  ++                          K+  A+D+F Q   
Sbjct: 142 SACAKSRAKGNGIQIHGLIV--------------------------KMGYAKDLFVQ--- 172

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
                 N+++  Y   G +D A+ +F+ M ERN++SWT MI G A+  + ++ + LF +M
Sbjct: 173 ------NSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRM 226

Query: 410 -RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
            R E   P        I++CA L  LE G +++A + +SG + +    +AL+ MY +C  
Sbjct: 227 VRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNA 286

Query: 469 VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
           ++ A  +F+     +    NAM +   + G    A+ ++  M+  G+ PDRI+ L+ +S+
Sbjct: 287 IDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISS 346

Query: 529 CNHAGLVKEGRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP 585
           C+    +  G+    + HG     G    ++     ID+  +  +   A  + D +  K 
Sbjct: 347 CSQLRNILWGK----SCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNK- 401

Query: 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
           +   W +++AG   +G +D    AA + F+ MP 
Sbjct: 402 TVVTWNSIVAGYVENGEVD----AAWETFETMPE 431



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 144/340 (42%), Gaps = 39/340 (11%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            +S H +++ +GF+  ++I N LID+Y K  +   A  +FD +    +V   +++A Y  
Sbjct: 356 GKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVE 415

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMR-RDDVKPDNFTF 152
           +  V  A E F   P K  + V +N +I+     S    AIE+F  M+ ++ V  D  T 
Sbjct: 416 NGEVDAAWETFETMPEK--NIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTM 473

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            S+ SA   +   +     ++  + K+G  L   +   L+ ++ +C             +
Sbjct: 474 MSIASACGHLGALD-LAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPE---------S 523

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A  +F+ +  RD  +WT  +         + A E  D M E                   
Sbjct: 524 AMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQ------------------ 565

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                ++ D   +   ++AC++ GL + GK++   +L+       +        +V L  
Sbjct: 566 ----GLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHY---GCMVDLLG 618

Query: 333 KCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEA 371
           + G + EA  +   MP E + V WN++L+A    G ++ A
Sbjct: 619 RAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMA 658


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 265/755 (35%), Positives = 396/755 (52%), Gaps = 103/755 (13%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           +H  ++ SG +    ++ +L++      ++ YAR LFDE   PD+               
Sbjct: 75  IHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVF-------------- 120

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
                               +NA+I +YS N+     +E++R MR   V PD FTF  VL
Sbjct: 121 -------------------MWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVL 161

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
            A   +++    C+ +H  ++K G G    V N L+++Y KC           +G A+ V
Sbjct: 162 KACTELLDFGLSCI-IHGQIIKYGFGSDVFVQNGLVALYAKC---------GHIGVAKVV 211

Query: 217 FDEMPERDELSWTTMMTGYVKN-DYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLM 275
           FD +  R  +SWT++++GY +N   ++A R F    +  V   W AL+S          +
Sbjct: 212 FDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVS----------I 261

Query: 276 LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG 335
           LR       YT V            G+ +H ++++   +  P   +    +L   Y KCG
Sbjct: 262 LR------AYTDVDD-------LEQGRSIHGFVIKMGLEDEPALLI----SLTAFYAKCG 304

Query: 336 KVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQ 395
                                          L+  AKS F+ M+  N++ W  MISG A+
Sbjct: 305 -------------------------------LVTVAKSFFDQMKTTNVIMWNAMISGYAK 333

Query: 396 NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSA 455
           NG+ EE + LF  M     KP       A+ + A +G+LE  + +   +  S Y S +  
Sbjct: 334 NGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFV 393

Query: 456 GNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI 515
             +LI MYA+CG VE A  VF+   + D V W+AMI   G HG G  AI LY  M + G+
Sbjct: 394 NTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGV 453

Query: 516 LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAK 575
            P+ +TF+ +L+ACNH+GLVKEG   F  M   + I P  +HY+  +DLL RAG   EA 
Sbjct: 454 FPNDVTFIGLLTACNHSGLVKEGWELFHCMK-DFEIVPRNEHYSCVVDLLGRAGYLGEAC 512

Query: 576 DVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLG 635
             I  +P +P   +W ALL+ C+I+  + LG  AA +LF L P++ G YV LSN+YA+  
Sbjct: 513 AFIMKIPIEPGVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSC 572

Query: 636 RWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMR 695
            WD  A VR LMR++G+ K+ G S IE++ K+  F V D +HP A+ ++  L++L   ++
Sbjct: 573 LWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRLERRLK 632

Query: 696 KLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHN 755
           ++G+VP T+ VLHD+  ++KE  LS HSE++AVA+GL+    G T+R+ KNLR C +CH+
Sbjct: 633 EVGFVPYTESVLHDLNYEEKEENLSFHSERIAVAYGLISTAPGTTLRITKNLRACVNCHS 692

Query: 756 AFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           A K +SK+V REI+VRD  RFHHF+DG CSCGDYW
Sbjct: 693 AIKLISKLVEREIIVRDANRFHHFKDGLCSCGDYW 727



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 106/261 (40%), Gaps = 53/261 (20%)

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           Q+H +LV SG   +      L+   +  G +  A  +F+     D   WNA+I +  ++ 
Sbjct: 74  QIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNN 133

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG---PYGIPPGE 555
                +E+Y  M   G+ PD  TF  VL AC    L+  G      +HG    YG   G 
Sbjct: 134 MYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTE--LLDFGLSCI--IHGQIIKYGF--GS 187

Query: 556 DHYAR--FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
           D + +   + L  + G    AK V D L +  +   W ++++G                 
Sbjct: 188 DVFVQNGLVALYAKCGHIGVAKVVFDGL-YHRTIVSWTSIISG----------------- 229

Query: 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFL-V 672
                            YA  G+  +A R+   MR+ GVK +    WI + + +  +  V
Sbjct: 230 -----------------YAQNGKAVEALRMFSQMRNNGVKPD----WIALVSILRAYTDV 268

Query: 673 DDTAHPEAQAVYKYLEQLVLE 693
           DD    + ++++ ++ ++ LE
Sbjct: 269 DDL--EQGRSIHGFVIKMGLE 287



 Score = 40.4 bits (93), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 77/170 (45%), Gaps = 4/170 (2%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           LA+ +  ++  S +     +   LID+Y K   + +AR +FD     D+V  + +I  Y 
Sbjct: 374 LAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYG 433

Query: 93  ASDNVKLAREMFN--KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
                  A  +++  K      + V +  ++TA +H+       ELF  M+  ++ P N 
Sbjct: 434 LHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCMKDFEIVPRNE 493

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVS 200
            ++ V+  L       + C  +    ++ G  ++ ++L+A   +Y +CV+
Sbjct: 494 HYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSA-CKIY-RCVT 541


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 258/682 (37%), Positives = 369/682 (54%), Gaps = 53/682 (7%)

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMH 173
            V +N M++    +     AIE+  DM    V+PD  TF S L A + + E      +MH
Sbjct: 236 VVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQL-EMLSLGREMH 294

Query: 174 CTVVK-SGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMP--ERDELSWTT 230
             V+K S     + V +AL+ +Y         +S   +G ARRVFD +P   R    W  
Sbjct: 295 AYVLKDSDLAANSFVASALVDMY---------ASHERVGVARRVFDMVPGGHRQLGLWNA 345

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           M+ GY +    + A E    M    GV  +                     E T   V+ 
Sbjct: 346 MVCGYAQAGMDEEALELFARMEAEAGVVPS---------------------ETTIAGVLP 384

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           ACA S  F   + VH Y+L+      P     V NAL+ LY + G +  AR IF  +  R
Sbjct: 385 ACARSETFAGKEAVHGYVLKRGMADNPF----VQNALMDLYARLGDMEAARWIFAAIEPR 440

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           D+VSWN +++  V  G I +A  L   M+++   +      G+A  G  EE +       
Sbjct: 441 DVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIA--GTDEEPVV------ 492

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
                P +      +  CA L A   G+++H   +    DS ++ G+AL+ MYA+CG + 
Sbjct: 493 -----PNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLA 547

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM-LKEGILPDRITFLTVLSAC 529
            +  VF+ +P  + ++WN +I A G HG G  AI L+++M +     P+ +TF+  L+AC
Sbjct: 548 LSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAAC 607

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSAP 588
           +H+G+V  G   F +M   +G+ P  D +A  +D+L RAG+  EA  +I S+ P +    
Sbjct: 608 SHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVS 667

Query: 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648
            W + L  CR+H N+ LG  AAE+LFQL P  A  YVLL N+Y+  G W+ ++ VR  MR
Sbjct: 668 AWSSFLGACRLHRNVPLGEIAAERLFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMR 727

Query: 649 DRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLH 708
            RGV KEPGCSWIE+D  +H F+  ++AHPE+  V+ +++ L   MR  GY PDT  VLH
Sbjct: 728 QRGVSKEPGCSWIELDGVIHRFMAGESAHPESTLVHAHMDALWERMRNQGYTPDTSSVLH 787

Query: 709 DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREI 768
           D+E  +K   L  HSEKLA+AFGL++ P GAT+RV KNLR+C DCH A KF+S++VGREI
Sbjct: 788 DIEESEKAAILRYHSEKLAIAFGLLRTPPGATIRVAKNLRVCNDCHEAAKFISRMVGREI 847

Query: 769 VVRDGKRFHHFRDGKCSCGDYW 790
           V+RD +RFHHF DG CSCGDYW
Sbjct: 848 VLRDVRRFHHFVDGACSCGDYW 869



 Score =  143 bits (360), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 134/552 (24%), Positives = 227/552 (41%), Gaps = 101/552 (18%)

Query: 86  TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
            L+ AY+   ++  A  +FN  P   RD V +N++I A         A++  RDM  +  
Sbjct: 101 ALLTAYARCGDLTAALALFNAMP--SRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGH 158

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSG--TGLFTSVLNALISVYVKCVSSPF 203
              +FT  SVL A + + E+ +   + H   +K+G   G      NAL+S+Y +      
Sbjct: 159 PLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARL----- 213

Query: 204 VSSRSLMGAARRVFDEMPERDE-----LSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
                L+  A+ +F  +   D      ++W TM++  V++     A E +          
Sbjct: 214 ----GLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVI---------- 259

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                         M+   ++ D  T+ S + AC+   +  LG+++HAY+L+        
Sbjct: 260 ------------YDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANS 307

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
           F   V +ALV +Y    +V  AR +F+ +P                              
Sbjct: 308 F---VASALVDMYASHERVGVARRVFDMVPGG---------------------------- 336

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSCAGLGALENG 437
             R L  W  M+ G AQ G  EE L+LF++M  E G  P +   AG + +CA        
Sbjct: 337 -HRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGK 395

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
             +H  ++  G   +    NAL+ +YAR G +EAA  +F  +   D VSWN +I      
Sbjct: 396 EAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQ 455

Query: 498 GNGARAIELYEQMLKEG------------------ILPDRITFLTVLSACNHAGLVKEGR 539
           G+   A +L  +M ++G                  ++P+ +T +T+L  C       +G+
Sbjct: 456 GHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGK 515

Query: 540 RYFETMHGPYGIPPGEDH----YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
                +HG Y +    D      +  +D+  + G  + ++ V D LP K +   W  L+ 
Sbjct: 516 E----IHG-YAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLP-KRNVITWNVLIM 569

Query: 596 GCRIHGNIDLGI 607
              +HG  D  I
Sbjct: 570 AYGMHGLGDEAI 581



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 160/339 (47%), Gaps = 25/339 (7%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD- 143
           + L+  Y++ + V +AR +F+  P   R    +NAM+  Y+       A+ELF  M  + 
Sbjct: 311 SALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEA 370

Query: 144 DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
            V P   T   VL A A   E       +H  V+K G      V NAL+ +Y +      
Sbjct: 371 GVVPSETTIAGVLPACAR-SETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGD--- 426

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
                 M AAR +F  +  RD +SW T++TG V   ++  A + +  M +          
Sbjct: 427 ------MEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTE 480

Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
            G    + +     +  +  T  +++  CA       GK++H Y +R       +  + V
Sbjct: 481 DGIAGTDEE----PVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRH----ALDSDIAV 532

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM----- 378
            +ALV +Y KCG +  +R +F+++P+R++++WN ++ AY   GL DEA +LF+ M     
Sbjct: 533 GSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNE 592

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RLEGFKP 416
            + N +++   ++  + +G  + G++LF  M R  G +P
Sbjct: 593 AKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQP 631



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 120/461 (26%), Positives = 194/461 (42%), Gaps = 110/461 (23%)

Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY-VKNDY 240
           G   +V NAL++ Y +C           + AA  +F+ MP RD +++ +++    +   +
Sbjct: 93  GFTPAVANALLTAYARCGD---------LTAALALFNAMPSRDAVTFNSLIAALCLFRRW 143

Query: 241 LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACAN-SGLFR 299
           L A    LD + +                   ML+    L  FT  SV+ AC++ +   R
Sbjct: 144 LPA----LDALRD-------------------MLLEGHPLSSFTLVSVLLACSHLAEDLR 180

Query: 300 LGKQVHAYLLRTEAKPTPE-FSLPVNNALVTLYWKCGKVNEARDIFNQM-----PERDLV 353
           LG++ HA+ L+       E F+    NAL+++Y + G V++A+ +F  +     P   +V
Sbjct: 181 LGREAHAFALKNGFLDGDERFAF---NALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVV 237

Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
           +WN                                M+S L Q+G   E +++   M   G
Sbjct: 238 TWN-------------------------------TMVSLLVQSGRCGEAIEVIYDMVARG 266

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSA----GNALITMYARCGVV 469
            +P    FA A+ +C+ L  L  GR++HA ++    DS L+A     +AL+ MYA    V
Sbjct: 267 VRPDGITFASALPACSQLEMLSLGREMHAYVLK---DSDLAANSFVASALVDMYASHERV 323

Query: 470 EAANCVFNTMPNVDSV--SWNAMIAALGQHGNGARAIELYEQMLKE-GILPDRITFLTVL 526
             A  VF+ +P        WNAM+    Q G    A+EL+ +M  E G++P   T   VL
Sbjct: 324 GVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVL 383

Query: 527 SACNHAGLVKEGRRYFETMHG----------PYGIPPGEDHYARFIDLLCRAGKFS--EA 574
            AC  +    E     E +HG          P+      D YAR  D+      F+  E 
Sbjct: 384 PACARS----ETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEP 439

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
           +DV+           W  L+ GC + G+I    Q   ++ Q
Sbjct: 440 RDVVS----------WNTLITGCVVQGHIHDAFQLVREMQQ 470



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 137/314 (43%), Gaps = 44/314 (14%)

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
           F+  V NAL+T Y +CG +  A  +FN MP RD V++N++++A            LF   
Sbjct: 94  FTPAVANALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALC----------LFR-- 141

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA-LENG 437
                  W   +  L               M LEG     +     + +C+ L   L  G
Sbjct: 142 ------RWLPALDAL-------------RDMLLEGHPLSSFTLVSVLLACSHLAEDLRLG 182

Query: 438 RQLHAQLVHSGY--DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS-----VSWNAM 490
           R+ HA  + +G+       A NAL++MYAR G+V+ A  +F ++   DS     V+WN M
Sbjct: 183 REAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTM 242

Query: 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
           ++ L Q G    AIE+   M+  G+ PD ITF + L AC+   ++  GR     +     
Sbjct: 243 VSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSD 302

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP-FKPSAPIWEALLAGCRIHGNIDLGIQA 609
           +       +  +D+     +   A+ V D +P       +W A++ G      +D   + 
Sbjct: 303 LAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCG-YAQAGMD---EE 358

Query: 610 AEQLFQLMPHHAGT 623
           A +LF  M   AG 
Sbjct: 359 ALELFARMEAEAGV 372



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/329 (20%), Positives = 142/329 (43%), Gaps = 53/329 (16%)

Query: 36  SVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASD 95
           +VH +++  G      + N L+D+Y +   +  AR +F  I   D+V+  TLI       
Sbjct: 397 AVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQG 456

Query: 96  NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV 155
           ++  A ++  +   + R   F +A         +G A  +       + V P+N T  ++
Sbjct: 457 HIHDAFQLVREMQQQGR---FTDAT------TEDGIAGTD------EEPVVPNNVTLMTL 501

Query: 156 LSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARR 215
           L   A++    K   ++H   ++       +V +AL+ +Y KC           +  +R 
Sbjct: 502 LPGCAMLAAPAKG-KEIHGYAMRHALDSDIAVGSALVDMYAKC---------GCLALSRA 551

Query: 216 VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLM 275
           VFD +P+R+ ++W  ++  Y  +   D A    D M                     ++ 
Sbjct: 552 VFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRM---------------------VMS 590

Query: 276 LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVTLYWKC 334
              + +E T+ + ++AC++SG+   G ++   + R    +PTP+    ++   V +  + 
Sbjct: 591 NEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPD----LHACAVDILGRA 646

Query: 335 GKVNEARDIFNQMP--ERDLVSWNAILSA 361
           G+++EA  I   M   E+ + +W++ L A
Sbjct: 647 GRLDEAYSIITSMEPGEQQVSAWSSFLGA 675



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 68/122 (55%), Gaps = 9/122 (7%)

Query: 416 PCD-YAFAGAITSCAGLGALENGRQLHA-----QLVHSGYDSSLSAGNALITMYARCGVV 469
           P D +A   A  S A L +L   R +H       L+H G+  +++  NAL+T YARCG +
Sbjct: 56  PLDHFALPPAAKSAAALRSLIAVRSIHGAALRRDLLH-GFTPAVA--NALLTAYARCGDL 112

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
            AA  +FN MP+ D+V++N++IAAL        A++    ML EG      T ++VL AC
Sbjct: 113 TAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLAC 172

Query: 530 NH 531
           +H
Sbjct: 173 SH 174



 Score = 43.5 bits (101), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 4/117 (3%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           + +H + +         + + L+D+Y K   L  +R +FD +P+ +++    LI AY   
Sbjct: 515 KEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMH 574

Query: 95  DNVKLAREMFNKTPLKMR---DTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKP 147
                A  +F++  +      + V + A + A SH+      +ELF  M+R+  V+P
Sbjct: 575 GLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQP 631


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 264/776 (34%), Positives = 402/776 (51%), Gaps = 104/776 (13%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           + + LQ C+  + I   +   +HA ++ S +     + N LI +Y +  K+  A  +F  
Sbjct: 285 FVAALQACEDSSFIKQGMF--IHATVLKSSYYINVFVANALIAMYARFGKMGEAANIF-- 340

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
                          Y+  D                 DT+ +N+M++ +  N   H A++
Sbjct: 341 ---------------YNMDD----------------WDTISWNSMLSGFVQNGLYHEALQ 369

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
            + +MR    KPD     S+++A A         MQ+H   +K+G      V N+L+ +Y
Sbjct: 370 FYHEMRDAGQKPDLVAVISIIAASAR-SGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMY 428

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            K  S  ++           +FD+MP++D +SWTT++ G+ +N     A E         
Sbjct: 429 AKFCSMKYMDC---------IFDKMPDKDVVSWTTIIAGHAQNGSHSRALELF------- 472

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                        RE+++    I LD    +S++ AC+   L    K++H+Y++R     
Sbjct: 473 -------------REVQLE--GIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS- 516

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
                                              DLV  N I+  Y   G +D A  +F
Sbjct: 517 -----------------------------------DLVLQNGIVDVYGECGNVDYAARMF 541

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
           E +  ++++SWT MIS    NG   E L+LF  M+  G +P   +    +++ A L AL+
Sbjct: 542 ELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALK 601

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            G+++H  L+  G+    S  + L+ MYARCG +E +  VFN + N D V W +MI A G
Sbjct: 602 KGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYG 661

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
            HG G  AI+L+ +M  E I PD I F+ VL AC+H+GL+ EGRR+ E+M   Y + P  
Sbjct: 662 MHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWP 721

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
           +HYA  +DLL RA    EA   +  +  +P+A +W ALL  C+IH N +LG  AA++L +
Sbjct: 722 EHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLE 781

Query: 616 LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
           + P + G YVL+SN+Y+   RW D   VR  M+  G+KK PGCSWIEV NKVH F+  D 
Sbjct: 782 MDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDK 841

Query: 676 AHPEAQAVYKYLEQLVLEMRKL-GYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMK 734
           +HP++  +Y  L Q+  ++ K  GYV  TKFVLH+ + ++K   L  HSE+LA+A+G++ 
Sbjct: 842 SHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGMLT 901

Query: 735 LPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            P GA++R+ KNLR+CGDCHN  K +SK   RE+V+RD  RFHHF+ G CSCGD W
Sbjct: 902 TPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 957



 Score =  185 bits (470), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 144/528 (27%), Positives = 252/528 (47%), Gaps = 85/528 (16%)

Query: 81  IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
           +    +++  Y+  +++  AR++F++ P K  D V +N+MI+AYS N     A+ LF +M
Sbjct: 215 VFVANSIVGMYTKCNDLNGARQLFDRMPEK-EDVVSWNSMISAYSSNGQSIEALRLFGEM 273

Query: 141 RRDDVKPDNFTFTSVLSALALIVEEE---KQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           ++  + P+ +TF + L A     E+    KQ M +H TV+KS   +   V NALI++Y +
Sbjct: 274 QKASLAPNTYTFVAALQA----CEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYAR 329

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
                       MG A  +F  M + D +SW +M++G+V+N     A +F   M +    
Sbjct: 330 F---------GKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRD---- 376

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                 +G             + D     S+I+A A SG    G Q+HAY +    K   
Sbjct: 377 ------AGQ------------KPDLVAVISIIAASARSGNTLHGMQIHAYAM----KNGL 414

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
           +  L V N+LV +Y K   +     IF++MP++D+V                        
Sbjct: 415 DSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVV------------------------ 450

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
                  SWT +I+G AQNG     L+LF +++LEG        +  + +C+GL  + + 
Sbjct: 451 -------SWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSV 503

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           +++H+ ++  G  S L   N ++ +Y  CG V+ A  +F  +   D VSW +MI+    +
Sbjct: 504 KEIHSYIIRKGL-SDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHN 562

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG--- 554
           G    A+EL+  M + G+ PD I+ +++LSA      +K+G+     +HG + I  G   
Sbjct: 563 GLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKE----IHG-FLIRKGFVL 617

Query: 555 EDHYAR-FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
           E   A   +D+  R G   ++++V + +  K    +W +++    +HG
Sbjct: 618 EGSLASTLVDMYARCGTLEKSRNVFNFIRNK-DLVLWTSMINAYGMHG 664



 Score =  133 bits (334), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 169/388 (43%), Gaps = 67/388 (17%)

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV-----------HRELKMLMLR 277
           T ++  Y K   L  A +  DGM       WNA+I  YV           +RE+++    
Sbjct: 118 TRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVS--G 175

Query: 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
           I LD  T+  ++ AC      R G +VH   ++ E   +  F   V N++V +Y KC  +
Sbjct: 176 IPLDACTFPCILKACGLLKDRRYGAEVHGLAIK-EGYVSIVF---VANSIVGMYTKCNDL 231

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER-NLLSWTVMISGLAQN 396
           N AR                                LF+ M E+ +++SW  MIS  + N
Sbjct: 232 NGARQ-------------------------------LFDRMPEKEDVVSWNSMISAYSSN 260

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
           G   E L+LF +M+     P  Y F  A+ +C     ++ G  +HA ++ S Y  ++   
Sbjct: 261 GQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVA 320

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
           NALI MYAR G +  A  +F  M + D++SWN+M++   Q+G    A++ Y +M   G  
Sbjct: 321 NALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQK 380

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHG----PYGIPPGEDHYAR----FIDLLCRA 568
           PD +  +++++A   +G          T+HG     Y +  G D   +     +D+  + 
Sbjct: 381 PDLVAVISIIAASARSG---------NTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKF 431

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAG 596
                   + D +P K     W  ++AG
Sbjct: 432 CSMKYMDCIFDKMPDKDVVS-WTTIIAG 458


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  457 bits (1176), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 264/776 (34%), Positives = 401/776 (51%), Gaps = 104/776 (13%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           + + LQ C+  + I   +   +HA ++ S +     + N LI +Y +  K+  A  +F  
Sbjct: 321 FVAALQACEDSSFIKQGMF--IHATVLKSSYYINVFVANALIAMYARFGKMGEAANIF-- 376

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
                          Y+  D                 DT+ +N+M++ +  N   H A++
Sbjct: 377 ---------------YNMDD----------------WDTISWNSMLSGFVQNGLYHEALQ 405

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
            + +MR    KPD     S+++A A         MQ+H   +K+G      V N+L+ +Y
Sbjct: 406 FYHEMRDAGQKPDLVAVISIIAASAR-SGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMY 464

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            K  S  ++           +FD+MP++D +SWTT++ G+ +N     A E         
Sbjct: 465 AKFCSMKYMDC---------IFDKMPDKDVVSWTTIIAGHAQNGSHSRALELF------- 508

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                        RE+++    I LD    +S++ AC+   L    K++H+Y++R     
Sbjct: 509 -------------REVQLE--GIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS- 552

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
                                              DLV  N I+  Y   G +D A  +F
Sbjct: 553 -----------------------------------DLVLQNGIVDVYGECGNVDYAARMF 577

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
           E +  ++++SWT MIS    NG   E L+LF  M+  G +P   +    +++ A L AL+
Sbjct: 578 ELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALK 637

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            G+++H  L+  G+    S  + L+ MYARCG +E +  VFN + N D V W +MI A G
Sbjct: 638 KGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYG 697

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
            HG G  AI+L+ +M  E I PD I F+ VL AC+H+GL+ EGRR+ E+M   Y + P  
Sbjct: 698 MHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWP 757

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
           +HY   +DLL RA    EA   +  +  +P+A +W ALL  C+IH N +LG  AA++L +
Sbjct: 758 EHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLE 817

Query: 616 LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
           + P + G YVL+SN+YA   RW D   VR  M+  G+KK PGCSWIEV NKVH F+  D 
Sbjct: 818 MDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDK 877

Query: 676 AHPEAQAVYKYLEQLVLEMRKL-GYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMK 734
           +HP++  +Y  L Q+  ++ K  GYV  TKFVLH+ + ++K   L  HSE+LA+A+G++ 
Sbjct: 878 SHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGMLT 937

Query: 735 LPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            P GA++R+ KNLR+CGDCHN  K +SK   RE+V+RD  RFHHF+ G CSCGD W
Sbjct: 938 TPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 993



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 172/625 (27%), Positives = 282/625 (45%), Gaps = 143/625 (22%)

Query: 11  TLANRYASQLQLCDPRNPITSSLARSVHAHMISS-GFKPREHIINRLIDIYCKSLKLVYA 69
           +L   Y+S L+LC  +  ++    + VHAHMI+S        +  RL+ +Y K   LV A
Sbjct: 112 SLDEAYSSVLELCGSKKALSE--GQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDA 169

Query: 70  RTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSN 129
             LFD +P   I                                   +NAMI AY  N  
Sbjct: 170 EKLFDGMPHKTIFT---------------------------------WNAMIGAYVTNGE 196

Query: 130 GHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC-MQMHCTVVKSGTGLFTSVL 188
              ++EL+R+MR   +  D  TF  +L A  L+  ++++C  ++H   +K G      V 
Sbjct: 197 PLGSLELYREMRVSGIPLDACTFPCILKACGLL--KDRRCGAEVHGLAIKEGYVSIVFVA 254

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER-DELSWTTMMTGYVKN-DYLDAARE 246
           N+++ +Y KC         + +  AR++FD MPE+ D +SW +M++ Y  N   ++A R 
Sbjct: 255 NSIVGMYTKC---------NDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRL 305

Query: 247 FLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
           F  G  +   +A N                      +T+ + + AC +S   + G  +HA
Sbjct: 306 F--GEMQKASLAPNT---------------------YTFVAALQACEDSSFIKQGMFIHA 342

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366
            +L    K +   ++ V NAL+ +Y + GK+ EA +IF  M + D +SWN++LS +V  G
Sbjct: 343 TVL----KSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNG 398

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
           L  EA                               L+ + +MR  G KP   A    I 
Sbjct: 399 LYHEA-------------------------------LQFYHEMRDAGQKPDLVAVISIIA 427

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
           + A  G   NG Q+HA  + +G DS L  GN+L+ MYA+   ++  +C+F+ MP+ D VS
Sbjct: 428 ASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVS 487

Query: 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN-----------HAGLV 535
           W  +IA   Q+G+ +RA+EL+ ++  EGI  D +   ++L AC+           H+ ++
Sbjct: 488 WTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYII 547

Query: 536 KEGRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592
           ++G       +G    YG     D+ AR  +L+       E KDV+           W +
Sbjct: 548 RKGLSDLVLQNGIVDVYGECGNVDYAARMFELI-------EFKDVVS----------WTS 590

Query: 593 LLAGCRIHGNIDLGIQAAEQLFQLM 617
           +++ C +H  +      A +LF LM
Sbjct: 591 MIS-CYVHNGL---ANEALELFHLM 611



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 148/322 (45%), Gaps = 40/322 (12%)

Query: 277 RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
           +  LDE  Y+SV+  C +      G+QVHA+++ + A     F   ++  LV +Y KCG 
Sbjct: 110 QFSLDE-AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVF---LSTRLVFMYGKCGC 165

Query: 337 VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
           + +A  +F+ MP + + +WNA++ AYV+                               N
Sbjct: 166 LVDAEKLFDGMPHKTIFTWNAMIGAYVT-------------------------------N 194

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
           G     L+L+ +MR+ G       F   + +C  L     G ++H   +  GY S +   
Sbjct: 195 GEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVA 254

Query: 457 NALITMYARCGVVEAANCVFNTMPNV-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGI 515
           N+++ MY +C  +  A  +F+ MP   D VSWN+MI+A   +G    A+ L+ +M K  +
Sbjct: 255 NSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASL 314

Query: 516 LPDRITFLTVLSACNHAGLVKEGRRYFET-MHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
            P+  TF+  L AC  +  +K+G     T +   Y I     +    I +  R GK  EA
Sbjct: 315 APNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVAN--ALIAMYARFGKMGEA 372

Query: 575 KDVIDSLPFKPSAPIWEALLAG 596
            ++  ++    +   W ++L+G
Sbjct: 373 ANIFYNMDDWDTIS-WNSMLSG 393


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 259/765 (33%), Positives = 407/765 (53%), Gaps = 97/765 (12%)

Query: 107 TPLKMRD--TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE 164
           TP +  D     YNA I  +    +   A+EL    ++ +++    T++SVL   A + +
Sbjct: 57  TPTRTIDHQVTDYNAKILHFCQLGDLENAMELICMCKKSELETK--TYSSVLQLCAGL-K 113

Query: 165 EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERD 224
                 ++H  +  +  G+  ++   L+S Y  C           +   RRVFD M +++
Sbjct: 114 SFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGD---------LKEGRRVFDTMEKKN 164

Query: 225 ELSWTTMMTGYVK-NDYLDA-------------------AREFLDGMSENVGVAWNALIS 264
              W  M++ Y K  D+ ++                   A E  D + +   ++WN++IS
Sbjct: 165 VYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMIS 224

Query: 265 GYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           GYV   L         +M+ L I +D  T  SV+  CANSG   LGK VH+  +++  + 
Sbjct: 225 GYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFER 284

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
              FS    N L+ +Y KCG ++ A  +F +M ER++VSW ++++ Y   G  D A  L 
Sbjct: 285 RINFS----NTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLL 340

Query: 376 EAMR---------------------------------------ERNLLSWTVMISGLAQN 396
           + M                                        E NL     ++   A+ 
Sbjct: 341 QQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKC 400

Query: 397 GYGEEGLKLFSQMRLEG----------FKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
           G  E    +FS M ++            KP     A  + +CA L ALE G+++H  ++ 
Sbjct: 401 GSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYILR 460

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
           +GY S     NAL+ +Y +CGV+  A  +F+ +P+ D VSW  MIA  G HG G  AI  
Sbjct: 461 NGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIAT 520

Query: 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
           + +M   GI PD ++F+++L AC+H+GL+++G R+F  M   + I P  +HYA  +DLL 
Sbjct: 521 FNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLS 580

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626
           R G  S+A + I++LP  P A IW ALL GCR + +I+L  + AE++F+L P ++G YVL
Sbjct: 581 RTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVL 640

Query: 627 LSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLV-DDTAHPEAQAVYK 685
           L+N+YA   +W++  R+R+ +  +G++K PGCSWIE+  KV++F+  ++++HP ++ +  
Sbjct: 641 LANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIES 700

Query: 686 YLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLK 745
            L+++  +M++ G+ P TK+ L + +  QKE AL  HSEKLA+AFGL+ LP   T+RV K
Sbjct: 701 LLKKMRRKMKEEGHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTK 760

Query: 746 NLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           NLR+CGDCH   KFMSK   REIV+RD  RFHHF+DG CSC  +W
Sbjct: 761 NLRVCGDCHEMAKFMSKETRREIVLRDPNRFHHFKDGYCSCRGFW 805



 Score =  155 bits (392), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 142/570 (24%), Positives = 237/570 (41%), Gaps = 123/570 (21%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y+S LQLC      T    + VH+ + S+     E +  +L+  Y     L   R +FD 
Sbjct: 102 YSSVLQLCAGLKSFTD--GKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDT 159

Query: 76  IPQPDIVARTTLIAAYSASDNVK--------------------LAREMFNKTPLKMRDTV 115
           + + ++     +++ Y+   + K                     A E+F+K  L  RD +
Sbjct: 160 MEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDK--LCDRDVI 217

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA----LIVEEEKQCMQ 171
            +N+MI+ Y  N      + +++ M    +  D  T  SVL   A    L + +      
Sbjct: 218 SWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGK-----A 272

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H   +KS      +  N L+ +Y KC           +  A RVF++M ER+ +SWT+M
Sbjct: 273 VHSLAIKSSFERRINFSNTLLDMYSKCGD---------LDGALRVFEKMGERNVVSWTSM 323

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           + GY ++   D A + L  M E  GV                     +LD    TS++ A
Sbjct: 324 IAGYTRDGRSDGAIKLLQQM-EKEGV---------------------KLDVVAITSILHA 361

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           CA SG    GK VH Y+         E +L V NAL+ +Y KCG +  A  +F+ M  +D
Sbjct: 362 CARSGSLDNGKDVHDYIKANNM----ESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKD 417

Query: 352 LVSW-------------------------------------------------NAILSAY 362
           ++SW                                                 NA++  Y
Sbjct: 418 IISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLY 477

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
           V  G++  A+ LF+ +  ++L+SWTVMI+G   +GYG E +  F++MR  G +P + +F 
Sbjct: 478 VKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFI 537

Query: 423 GAITSCAGLGALENG-RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
             + +C+  G LE G R  +        +  L     ++ + +R G +  A     T+P 
Sbjct: 538 SILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPI 597

Query: 482 V-DSVSWNAMIAALGQHGNGARAIELYEQM 510
             D+  W A++     + +    IEL E++
Sbjct: 598 APDATIWGALLCGCRNYHD----IELAEKV 623


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/590 (39%), Positives = 332/590 (56%), Gaps = 44/590 (7%)

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           + AAR +F+ +P R+ +SW  +  GY+KN  L  AR+  D M E     WNA+++G  + 
Sbjct: 154 LTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNL 213

Query: 270 E---------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
                     L M    +  DEF   SV   CA       G+QVHAY++R+      +  
Sbjct: 214 GFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGL----DRD 269

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           + V ++L  +Y +CG + E   +   +P   +VS N I                      
Sbjct: 270 MCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTI---------------------- 307

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
                    I+G  QNG  E  L+ F  MR  G       F  AI+SC+ L AL  G+Q+
Sbjct: 308 ---------IAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQI 358

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           H Q++ +G D  +     L+ MY+RCG +  +  VF      D+   +AMI+A G HG+G
Sbjct: 359 HGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHG 418

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
            +AIEL++QM+  G  P  +TFL +L AC+H+GL +EG   FE M   YG+ P   HY  
Sbjct: 419 QKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTC 478

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
            +DLL R+G   EA+ +I S+P  P   IW+ LL+ C+   N D+  + A+++ +L PH 
Sbjct: 479 VVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHD 538

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEA 680
           + +YVLLSN+ A   RW D + VRK MRD  V+KEPG SW+E+   +H F   D +HP  
Sbjct: 539 SASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQ 598

Query: 681 QAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT 740
           + + + LE+++ ++R+ GY PD   VLHDME ++KE +LS HSEKLA+AF  + LP G  
Sbjct: 599 KEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVP 658

Query: 741 VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +RV+KNLR+C DCH A K MS+V GREIVVRD  RFHHF+DG+CSC DYW
Sbjct: 659 IRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 708



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 132/239 (55%), Gaps = 4/239 (1%)

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
           +Q+HA+   T    T  F+    N L+  Y   G +  AR++F ++P R+++SWN +   
Sbjct: 123 RQLHAFAA-TSGAATDRFT---ANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGG 178

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
           Y+  G +  A+ LF+ M ERN+ +W  M++GL   G+ EE L  F  MR EG  P ++  
Sbjct: 179 YIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGL 238

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
                 CAGL  +  GRQ+HA +V SG D  +  G++L  MY RCG ++    V   +P+
Sbjct: 239 GSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPS 298

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
           +  VS N +IA   Q+G+   A+E +  M   G+  D +TF++ +S+C+    + +G++
Sbjct: 299 LSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQ 357



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 111/481 (23%), Positives = 196/481 (40%), Gaps = 78/481 (16%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           R +HA   +SG        N L+  Y     L  AR LF+ IP+ ++++   L   Y  +
Sbjct: 123 RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKN 182

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
            ++  AR++F++ P   R+   +NAM+   ++      ++  F DMRR+ + PD F   S
Sbjct: 183 GDLGGARKLFDEMP--ERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGS 240

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           V    A +  +     Q+H  VV+SG      V ++L  +Y++C           +    
Sbjct: 241 VFRCCAGL-RDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRC---------GCLQEGE 290

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
            V   +P    +S  T++ G  +N   + A E+   M  +VGVA                
Sbjct: 291 AVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYF-CMMRSVGVA---------------- 333

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
                 D  T+ S IS+C++      G+Q+H  +++          +PV   LV +Y +C
Sbjct: 334 -----ADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKV----VPVMTCLVHMYSRC 384

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
           G + ++  +F      D    +A++SAY                                
Sbjct: 385 GCLGDSERVFFGYCGSDTFLLSAMISAY-------------------------------G 413

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSL 453
            +G+G++ ++LF QM   G +P D  F   + +C+  G  E G      +  + G   S+
Sbjct: 414 FHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSV 473

Query: 454 SAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN-------GARAIE 505
                ++ +  R G ++ A  +  +MP   D V W  +++A     N         R IE
Sbjct: 474 KHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIE 533

Query: 506 L 506
           L
Sbjct: 534 L 534


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/587 (38%), Positives = 337/587 (57%), Gaps = 44/587 (7%)

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           AR +F+ +P+R+ +SW  ++ GYVKN  L+ AR+  D M       WNA+++G  +  L 
Sbjct: 96  ARGLFERIPKRNVMSWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLN 155

Query: 273 ---------MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
                    M    +Q DE+   S+   CA       G+QVHAY++R+      +  + V
Sbjct: 156 EESLGFFFAMRREGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGL----DRDMCV 211

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
            ++L  +Y +CG + +       +P  ++VS N                           
Sbjct: 212 GSSLAHMYMRCGFLRDGEAALRALPSLNIVSCNTT------------------------- 246

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
                 ISG  QNG  E  L+ F  MR  G +     F  A+TSC+ L AL  G+Q+HA 
Sbjct: 247 ------ISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHAL 300

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
            + +G D  +    +L+ MY+RCG +  +  V       D V  +AMI+A G HG+G +A
Sbjct: 301 AIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKA 360

Query: 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563
           + L++QM+  G  P+ +TFLT+L AC+H+GL  EG   FE M   YG+ P   HY   +D
Sbjct: 361 VGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIVD 420

Query: 564 LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623
           LL R+G  +EA+D+I S+P +P   IW+ LL+ C+     D+  + AE++ +L PH + +
Sbjct: 421 LLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHDSAS 480

Query: 624 YVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAV 683
           YVLLSN+ A   RW+D ++VR+ MR++ V+KEPG SW+E+  ++H F   D +H   + +
Sbjct: 481 YVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQREI 540

Query: 684 YKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRV 743
            + LE+++  +R+ GY PD   V HDME ++KE +L+ HSEKLA+AF  + LP G  +RV
Sbjct: 541 VECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLSLPEGVPIRV 600

Query: 744 LKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +KNLR+C DCH A K MSKV+GREIVVRD  RFHHF+DGKCSCGDYW
Sbjct: 601 MKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 647



 Score =  116 bits (290), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 102/463 (22%), Positives = 195/463 (42%), Gaps = 71/463 (15%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R +HA   +SG        N L+  Y        AR LF+ IP+ ++++   LI  Y 
Sbjct: 60  LLRQLHAFAATSGAAADRFTANHLLLAYADLGDFPTARGLFERIPKRNVMSWNILIGGYV 119

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
            + +++ AR++F++ P   R+   +NAM+   +++     ++  F  MRR+ ++PD +  
Sbjct: 120 KNGDLETARKLFDEMP--ARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGL 177

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            S+    A +  +     Q+H  VV+SG      V ++L  +Y++C           +  
Sbjct: 178 GSLFRCCAGL-RDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRC---------GFLRD 227

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
                  +P  + +S  T ++G  +N   + A EF   M    GV  NA+          
Sbjct: 228 GEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLM-RGAGVEANAV---------- 276

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                      T+ S +++C++      G+Q+HA  ++T         +PV  +LV +Y 
Sbjct: 277 -----------TFVSAVTSCSDLAALAQGQQIHALAIKTGVDKV----VPVMTSLVHMYS 321

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           +CG + ++  +  +    DLV  +A++SAY                              
Sbjct: 322 RCGCLGDSERVCLEYSGTDLVLCSAMISAY------------------------------ 351

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDS 451
              +G+G++ + LF QM   G +P +  F   + +C+  G  + G      +  + G   
Sbjct: 352 -GFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQP 410

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAA 493
           S+     ++ +  R G +  A  +  +MP   D V W  +++A
Sbjct: 411 SVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSA 453


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/590 (39%), Positives = 332/590 (56%), Gaps = 44/590 (7%)

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           + AAR +F+ +P R+ +SW  +  GY+KN  L  AR+  D M E     WNA+++G  + 
Sbjct: 92  LTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNL 151

Query: 270 E---------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
                     L M    +  DEF   SV   CA       G+QVHAY++R+      +  
Sbjct: 152 GFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGL----DRD 207

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           + V ++L  +Y +CG + E   +   +P   +VS N I                      
Sbjct: 208 MCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTI---------------------- 245

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
                    I+G  QNG  E  L+ F  MR  G       F  AI+SC+ L AL  G+Q+
Sbjct: 246 ---------IAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQI 296

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           H Q++ +G D  +     L+ MY+RCG +  +  VF      D+   +AMI+A G HG+G
Sbjct: 297 HGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHG 356

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
            +AIEL++QM+  G  P  +TFL +L AC+H+GL +EG   FE M   YG+ P   HY  
Sbjct: 357 QKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTC 416

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
            +DLL R+G   EA+ +I S+P  P   IW+ LL+ C+   N D+  + A+++ +L PH 
Sbjct: 417 VVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHD 476

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEA 680
           + +YVLLSN+ A   RW D + VRK MRD  V+KEPG SW+E+   +H F   D +HP  
Sbjct: 477 SASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQ 536

Query: 681 QAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT 740
           + + + LE+++ ++R+ GY PD   VLHDME ++KE +LS HSEKLA+AF  + LP G  
Sbjct: 537 KEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVP 596

Query: 741 VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +RV+KNLR+C DCH A K MS+V GREIVVRD  RFHHF+DG+CSC DYW
Sbjct: 597 IRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 646



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 132/239 (55%), Gaps = 4/239 (1%)

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
           +Q+HA+   T    T  F+    N L+  Y   G +  AR++F ++P R+++SWN +   
Sbjct: 61  RQLHAFAA-TSGAATDRFT---ANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGG 116

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
           Y+  G +  A+ LF+ M ERN+ +W  M++GL   G+ EE L  F  MR EG  P ++  
Sbjct: 117 YIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGL 176

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
                 CAGL  +  GRQ+HA +V SG D  +  G++L  MY RCG ++    V   +P+
Sbjct: 177 GSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPS 236

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
           +  VS N +IA   Q+G+   A+E +  M   G+  D +TF++ +S+C+    + +G++
Sbjct: 237 LSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQ 295



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 114/503 (22%), Positives = 203/503 (40%), Gaps = 83/503 (16%)

Query: 13  ANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTL 72
           A  ++   + C    P+     R +HA   +SG        N L+  Y     L  AR L
Sbjct: 44  ARLFSHLFRACRALRPL-----RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAAREL 98

Query: 73  FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
           F+ IP+ ++++   L   Y  + ++  AR++F++ P   R+   +NAM+   ++      
Sbjct: 99  FERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMP--ERNVATWNAMVAGLTNLGFDEE 156

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           ++  F DMRR+ + PD F   SV    A +  +     Q+H  VV+SG      V ++L 
Sbjct: 157 SLGFFLDMRREGMHPDEFGLGSVFRCCAGL-RDVVTGRQVHAYVVRSGLDRDMCVGSSLA 215

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
            +Y++C           +     V   +P    +S  T++ G  +N   + A E+   M 
Sbjct: 216 HMYMRC---------GCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYF-CMM 265

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
            +VGVA                      D  T+ S IS+C++      G+Q+H  +++  
Sbjct: 266 RSVGVA---------------------ADVVTFVSAISSCSDLAALAQGQQIHGQVMKAG 304

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
                   +PV   LV +Y +CG + ++  +F      D    +A++SAY          
Sbjct: 305 VDKV----VPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAY---------- 350

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
                                  +G+G++ ++LF QM   G +P D  F   + +C+  G
Sbjct: 351 ---------------------GFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSG 389

Query: 433 ALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAM 490
             E G      +  + G   S+     ++ +  R G ++ A  +  +MP   D V W  +
Sbjct: 390 LKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTL 449

Query: 491 IAALGQHGN-------GARAIEL 506
           ++A     N         R IEL
Sbjct: 450 LSACKTQKNFDMAERIAKRVIEL 472


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 277/807 (34%), Positives = 416/807 (51%), Gaps = 96/807 (11%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           S  RS+HA ++ SG K +  + N L+ IY     +  A  LF+++               
Sbjct: 145 SQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKME-------------- 190

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                               RD V +NA I A + + +   A+ELF+ M+ + V+P   T
Sbjct: 191 --------------------RDLVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARIT 230

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
               L+  A I    +Q   +H  V +SG      V  AL S Y +            + 
Sbjct: 231 LVIALTVCATI----RQAQAIHFIVRESGLEQTLVVSTALASAYARL---------GHLY 277

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYL-DAAREFLDGMSENVG-------------- 256
            A+ VFD   ERD +SW  M+  Y ++ ++ +AA  F   + E +               
Sbjct: 278 QAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGCS 337

Query: 257 ---------------------VAWNALISGYVH----RELKMLMLRIQLDEFTYTSVISA 291
                                V  NAL+  Y       E + L  RI  +  ++ ++I+ 
Sbjct: 338 SLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIPCNAVSWNTMIAG 397

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
            +  G  +   ++   +      P     L +  A+ +   +   + E R + +++    
Sbjct: 398 SSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCG 457

Query: 352 LVSWNAILSA----YVSAGLIDEAKSLFE--AMRER-NLLSWTVMISGLAQNGYGEEGLK 404
             S  AI +A    Y S G IDEA + F+  AM +R +++SW  +IS L+Q+G+G+  L 
Sbjct: 458 YASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALG 517

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
            F +M L G  P        + +CAG  AL  G  +H  L HSG +S+L    AL +MY 
Sbjct: 518 FFRRMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDHLRHSGMESNLFVATALASMYG 577

Query: 465 RCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
           RCG +E+A  +F  +    D V +NAMIAA  Q+G    A++L+ +M +EG  PD  +F+
Sbjct: 578 RCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFV 637

Query: 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF 583
           +VLSAC+H GL  EG   F +M   YGI P EDHYA  +D+L RAG  ++A+++I  +  
Sbjct: 638 SVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDV 697

Query: 584 KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARV 643
           KP+  +W+ LL  CR + ++D G  A   + +L P     YV+LSN+ A  G+WD+AA V
Sbjct: 698 KPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEV 757

Query: 644 RKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDT 703
           R  M  RG++KE G SWIE+ ++VH F+  D +HP ++ +Y+ LE+L  E+R++GYVPDT
Sbjct: 758 RTEMESRGLRKEAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDT 817

Query: 704 KFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKV 763
           + VL  ++  +KE  L  HSE+LA+A G+M      TVRV+KNLR+C DCHNA KF+SK+
Sbjct: 818 RLVLRKVDEAEKERLLCQHSERLAIALGVMS-SSTDTVRVMKNLRVCEDCHNATKFISKI 876

Query: 764 VGREIVVRDGKRFHHFRDGKCSCGDYW 790
           V +EIVVRD  RFHHF DG CSCGDYW
Sbjct: 877 VNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  170 bits (431), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 140/515 (27%), Positives = 229/515 (44%), Gaps = 118/515 (22%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIY--CKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           S  R +HA ++S G +  E + N L+ +Y  C+SL  V                      
Sbjct: 46  SQGRRIHARIVSLGLE--EELGNHLLRLYLKCESLGDV---------------------- 81

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
                       E+F++  L++RD   +  +ITAY+ +     AI +F  M+++ V+ D 
Sbjct: 82  -----------EEVFSR--LEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDA 128

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
            TF +VL A A +  +  Q   +H  +V+SG    + + N L+ +Y  C           
Sbjct: 129 VTFLAVLKACARL-GDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSC---------GC 178

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           + +A  +F++M ERD +SW   +    ++  L  A E                       
Sbjct: 179 VASAMLLFEKM-ERDLVSWNAAIAANAQSGDLGIALELFQ-------------------- 217

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
             +M +  ++    T    ++ CA     R  + +H +++R   +   E +L V+ AL +
Sbjct: 218 --RMQLEGVRPARITLVIALTVCAT---IRQAQAIH-FIVR---ESGLEQTLVVSTALAS 268

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
            Y + G + +A+++F++  ERD+VSWNA+L AY                           
Sbjct: 269 AYARLGHLYQAKEVFDRAAERDVVSWNAMLGAY--------------------------- 301

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
               AQ+G+  E   LF++M  EG  P       A T C+   +L  GR +H   +  G 
Sbjct: 302 ----AQHGHMSEAALLFARMLHEGISPSKVTLVNASTGCS---SLRFGRMIHGCALEKGL 354

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
           D  +  GNAL+ MY RCG  E A  +F  +P  ++VSWN MIA   Q G   RA+EL+++
Sbjct: 355 DRDIVLGNALLDMYTRCGSPEEARHLFKRIP-CNAVSWNTMIAGSSQKGQMKRAVELFQR 413

Query: 510 MLKEGILPDRITFLTVLSAC----NHAGLVKEGRR 540
           M  EG+ P R T+L +L A       A  + EGR+
Sbjct: 414 MQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRK 448



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 127/454 (27%), Positives = 197/454 (43%), Gaps = 90/454 (19%)

Query: 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS 227
           Q  ++H  +V    GL   + N L+ +Y+KC S         +G    VF  +  RDE S
Sbjct: 47  QGRRIHARIVS--LGLEEELGNHLLRLYLKCES---------LGDVEEVFSRLEVRDEAS 95

Query: 228 WTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTS 287
           WTT++T Y ++                 G A  A+  G  HR   M    ++ D  T+ +
Sbjct: 96  WTTIITAYTEH-----------------GQAKRAI--GMFHR---MQQEGVRCDAVTFLA 133

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           V+ ACA  G    G+ +HA+++ +  K     +                           
Sbjct: 134 VLKACARLGDLSQGRSIHAWIVESGLKGKSVLA--------------------------- 166

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
                   N +L  Y S G +  A  LFE M ER+L+SW   I+  AQ+G     L+LF 
Sbjct: 167 --------NLLLHIYGSCGCVASAMLLFEKM-ERDLVSWNAAIAANAQSGDLGIALELFQ 217

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467
           +M+LEG +P       A+T CA    +   + +H  +  SG + +L    AL + YAR G
Sbjct: 218 RMQLEGVRPARITLVIALTVCA---TIRQAQAIHFIVRESGLEQTLVVSTALASAYARLG 274

Query: 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
            +  A  VF+     D VSWNAM+ A  QHG+ + A  L+ +ML EGI P ++T +   +
Sbjct: 275 HLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNAST 334

Query: 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA----RFIDLLCRAGKFSEAKDVIDSLPF 583
            C+         R+   +HG   +  G D         +D+  R G   EA+ +   +P 
Sbjct: 335 GCSSL-------RFGRMIHG-CALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIPC 386

Query: 584 KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
             +A  W  ++AG    G     ++ A +LFQ M
Sbjct: 387 --NAVSWNTMIAGSSQKGQ----MKRAVELFQRM 414



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 142/335 (42%), Gaps = 53/335 (15%)

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           ++ A  +  L   G+++HA ++      +      + N L+ LY KC  + +  ++F+++
Sbjct: 35  LLRAAGDDRLLSQGRRIHARIV------SLGLEEELGNHLLRLYLKCESLGDVEEVFSRL 88

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
             RD                        EA       SWT +I+   ++G  +  + +F 
Sbjct: 89  EVRD------------------------EA-------SWTTIITAYTEHGQAKRAIGMFH 117

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467
           +M+ EG +     F   + +CA LG L  GR +HA +V SG        N L+ +Y  CG
Sbjct: 118 RMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCG 177

Query: 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
            V +A  +F  M   D VSWNA IAA  Q G+   A+EL+++M  EG+ P RIT +  L+
Sbjct: 178 CVASAMLLFEKMER-DLVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALT 236

Query: 528 ACNHAGLVKEGRRYFETMH---GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584
            C          R  + +H      G+               R G   +AK+V D    +
Sbjct: 237 VCATI-------RQAQAIHFIVRESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAER 289

Query: 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
                W A+L     HG++      A  LF  M H
Sbjct: 290 DVVS-WNAMLGAYAQHGHMS----EAALLFARMLH 319



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 13/144 (9%)

Query: 27  NPITSSLARSVHA--------HMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP- 77
           N I SSL++  H          M   G  P +     ++D    +  L     + D +  
Sbjct: 500 NAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDHLRH 559

Query: 78  ---QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAI 134
              + ++   T L + Y    +++ ARE+F K  ++ RD V +NAMI AYS N     A+
Sbjct: 560 SGMESNLFVATALASMYGRCGSLESAREIFEKVAVE-RDVVIFNAMIAAYSQNGLAGEAL 618

Query: 135 ELFRDMRRDDVKPDNFTFTSVLSA 158
           +LF  M+++  +PD  +F SVLSA
Sbjct: 619 KLFWRMQQEGSRPDEQSFVSVLSA 642


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 281/799 (35%), Positives = 421/799 (52%), Gaps = 117/799 (14%)

Query: 66  LVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYS 125
           LVY + L D   + D+     L+  YS    +  AR++F++ P+  RD V +N++I+ YS
Sbjct: 127 LVYEQIL-DMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPV--RDLVSWNSLISGYS 183

Query: 126 HNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA--LIVEEEKQCMQMHCTVVKSGTGL 183
            +     A+E++ +++   + PD+FT +SVL A    L+V   KQ   +H   +KSG   
Sbjct: 184 SHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVV---KQGQGLHGFALKSGVNS 240

Query: 184 FTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL-D 242
              V N L+++Y+K    P          ARRVFDEM  RD +S+ TM+ GY+K + + +
Sbjct: 241 VVVVNNGLVAMYLK-FRRP--------TDARRVFDEMDVRDSVSYNTMICGYLKLEMVEE 291

Query: 243 AAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGK 302
           + R FL+ + +                         + D  T +SV+ AC +     L K
Sbjct: 292 SVRMFLENLDQ------------------------FKPDLLTVSSVLRACGHLRDLSLAK 327

Query: 303 QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY 362
            ++ Y+L    K        V N L+ +Y KCG +  ARD+FN M  +D VSWN+I+S Y
Sbjct: 328 YIYNYML----KAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGY 383

Query: 363 VSAGLIDEAKSLFEAM----RERNLLSWTVMIS------------GLAQNGY-------- 398
           + +G + EA  LF+ M     + + +++ ++IS            GL  NG         
Sbjct: 384 IQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDL 443

Query: 399 -------------GEEG--LKLFS-------------------------------QMRLE 412
                        GE G  LK+FS                               QMR  
Sbjct: 444 SVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKS 503

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
              P    F   +  CA L A   G+++H  L+  GY+S L  GNALI MY++CG +E +
Sbjct: 504 EVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENS 563

Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
           + VF  M   D V+W  MI A G +G G +A+E +  M K GI+PD + F+ ++ AC+H+
Sbjct: 564 SRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHS 623

Query: 533 GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592
           GLV EG   FE M   Y I P  +HYA  +DLL R+ K S+A++ I ++P KP A IW +
Sbjct: 624 GLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWAS 683

Query: 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           +L  CR  G+++   + + ++ +L P   G  +L SN YA L +WD  + +RK ++D+ +
Sbjct: 684 VLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHI 743

Query: 653 KKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDM-E 711
            K PG SWIEV   VHVF   D + P+++A+YK LE L   M K GY+PD + V  ++ E
Sbjct: 744 TKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEE 803

Query: 712 SDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVR 771
            ++K   +  HSE+LA+AFGL+    G  ++V+KNLR+CGDCH   K +SK+VGREI+VR
Sbjct: 804 EEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVR 863

Query: 772 DGKRFHHFRDGKCSCGDYW 790
           D  RFH F+DG CSC D W
Sbjct: 864 DANRFHLFKDGTCSCKDRW 882



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 149/603 (24%), Positives = 265/603 (43%), Gaps = 105/603 (17%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           R +HA +IS G    +    +LID Y    +   + ++F  +               S +
Sbjct: 24  RRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRV---------------SPA 68

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
            NV L                 +N++I A+S N     A+E +  +R   V PD +TF S
Sbjct: 69  KNVYL-----------------WNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPS 111

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           V+ A A + + E   + ++  ++  G      V NAL+ +Y         S   L+  AR
Sbjct: 112 VIKACAGLFDAEMGDL-VYEQILDMGFESDLFVGNALVDMY---------SRMGLLTRAR 161

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
           +VFDEMP RD +SW ++++GY  + Y + A E                    ++ ELK  
Sbjct: 162 QVFDEMPVRDLVSWNSLISGYSSHGYYEEALE--------------------IYHELKNS 201

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
              I  D FT +SV+ A  N  + + G+ +H + L    K      + VNN LV +Y K 
Sbjct: 202 W--IVPDSFTVSSVLPAFGNLLVVKQGQGLHGFAL----KSGVNSVVVVNNGLVAMYLKF 255

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
            +  +AR +F++M  RD VS+N ++  Y+   ++                          
Sbjct: 256 RRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMV-------------------------- 289

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
                EE +++F +  L+ FKP     +  + +C  L  L   + ++  ++ +G+    +
Sbjct: 290 -----EESVRMFLE-NLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLEST 343

Query: 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
             N LI +YA+CG +  A  VFN+M   D+VSWN++I+   Q G+   A++L++ M+   
Sbjct: 344 VRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIME 403

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
              D IT+L ++S       +K G+    +     GI          ID+  + G+  ++
Sbjct: 404 EQADHITYLMLISVSTRLADLKFGKG-LHSNGIKSGICIDLSVSNALIDMYAKCGEVGDS 462

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL--FQLMPHHAGTYVLLSNMYA 632
             +  S+    +   W  +++ C   G+   G+Q   Q+   +++P  A T+++   M A
Sbjct: 463 LKIFSSMGTGDTVT-WNTVISACVRFGDFATGLQVTTQMRKSEVVPDMA-TFLVTLPMCA 520

Query: 633 NLG 635
           +L 
Sbjct: 521 SLA 523



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 116/538 (21%), Positives = 220/538 (40%), Gaps = 107/538 (19%)

Query: 1   MMMKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIY 60
           M ++N D  +      +S L+ C     +  SLA+ ++ +M+ +GF     + N LID+Y
Sbjct: 295 MFLENLDQFKPDLLTVSSVLRACGHLRDL--SLAKYIYNYMLKAGFVLESTVRNILIDVY 352

Query: 61  CKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAM 120
            K   ++ AR +F+ +   D V+  ++I+ Y  S ++                       
Sbjct: 353 AKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDL----------------------- 389

Query: 121 ITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSG 180
                       A++LF+ M   + + D+ T+  ++S ++  + + K    +H   +KSG
Sbjct: 390 ----------MEAMKLFKMMMIMEEQADHITYLMLIS-VSTRLADLKFGKGLHSNGIKSG 438

Query: 181 TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY 240
             +  SV NALI +Y KC           +G + ++F  M   D ++W T+++  V+   
Sbjct: 439 ICIDLSVSNALIDMYAKC---------GEVGDSLKIFSSMGTGDTVTWNTVISACVRFG- 488

Query: 241 LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRL 300
                +F  G+                    +M    +  D  T+   +  CA+    RL
Sbjct: 489 -----DFATGLQVTT----------------QMRKSEVVPDMATFLVTLPMCASLAAKRL 527

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           GK++H  LLR       E  L + NAL+ +Y KCG +  +  +F +M  RD+V+W  ++ 
Sbjct: 528 GKEIHCCLLRFGY----ESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIY 583

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
           AY                                  G GE+ L+ F+ M   G  P    
Sbjct: 584 AY-------------------------------GMYGEGEKALETFADMEKSGIVPDSVV 612

Query: 421 FAGAITSCAGLGALENGRQLHAQL-VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
           F   I +C+  G ++ G     ++  H   D  +     ++ + +R   +  A      M
Sbjct: 613 FIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAM 672

Query: 480 P-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536
           P   D+  W +++ A    G+   A  +  ++++  + PD   + ++L++  +A L K
Sbjct: 673 PIKPDASIWASVLRACRTSGDMETAERVSRRIIE--LNPDDPGY-SILASNAYAALRK 727



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 6/191 (3%)

Query: 424 AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM-PNV 482
           A++S + L  L   R++HA ++  G DSS      LI  Y+      ++  VF  + P  
Sbjct: 13  ALSSSSNLNEL---RRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAK 69

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
           +   WN++I A  ++G    A+E Y ++ +  + PD+ TF +V+ AC      + G   +
Sbjct: 70  NVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVY 129

Query: 543 ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
           E +    G           +D+  R G  + A+ V D +P +     W +L++G   HG 
Sbjct: 130 EQILD-MGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVS-WNSLISGYSSHGY 187

Query: 603 IDLGIQAAEQL 613
            +  ++   +L
Sbjct: 188 YEEALEIYHEL 198


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/597 (38%), Positives = 352/597 (58%), Gaps = 15/597 (2%)

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
           S RSL  A  R+  E   +   +   +++ Y K+  L   R   D         +++L++
Sbjct: 18  SPRSLRRAHARLIKEGLAQHPPAPALLVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLA 77

Query: 265 GYVHRE---LKMLMLRIQL-------DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
              H E   L + +LR  L       D F   S+ SA A      LGKQ+H + +   A 
Sbjct: 78  AVSHSESPELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLGKQLHGHFV---AS 134

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
           P     + V ++L+ +Y KCG  ++AR +F+ +  ++ V W A++S YV  G  DEA  L
Sbjct: 135 PYSSDDV-VKSSLIDMYCKCGVPDDARKVFDSIVAKNSVMWTALISGYVLNGRSDEALEL 193

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD-YAFAGAITSCAGLGA 433
           F +M  R L +WT +ISG  ++G     +KLF  MR +G    D +  + AI   A L A
Sbjct: 194 FRSMPGRTLFAWTALISGFVRSGESVSAVKLFVDMRRDGVSIDDAFVLSSAIGGAADLAA 253

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
              GRQLH+  +  G+ SS+  GNA++ MY++C  + +A  VF  +   D +SW  M+  
Sbjct: 254 HVLGRQLHSLTMRLGFSSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWTTMLVG 313

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
             QHG    A  LY++M+  G+ P+ +TF+ ++ AC+HAGLV++GR+ F++M G YGI P
Sbjct: 314 EAQHGRAEEAFSLYDRMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKGEYGINP 373

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
              HY  ++DLL R+G  +EA+++I ++P+ P    W +LL+ C+ + N ++ I+ A+ L
Sbjct: 374 RLQHYTCYLDLLSRSGHLAEAEELITTMPYVPDEATWASLLSACKKYNNAEMSIRVADNL 433

Query: 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVD 673
            +L P +  TYVLLSN+YA  G+WD    VRKLM D  ++KEPG SWIEV  +  +F   
Sbjct: 434 LELRPKYPSTYVLLSNVYAVNGKWDSVDTVRKLMADMEIRKEPGYSWIEVGREFRLFHAG 493

Query: 674 DTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLM 733
           +      + +  +LE+LV EMR+ GYVPDT  V+HD+E  +KE+ L  HSE+LAVAFG++
Sbjct: 494 EVPIDLREEILGFLEELVSEMRQRGYVPDTSSVMHDLEEHEKEHHLCLHSERLAVAFGIL 553

Query: 734 KLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           + P G+ +RV+KNLR+C DCH   KF+S++  R+I+VRD  RFHHF  GKCSC ++W
Sbjct: 554 RSPLGSVIRVVKNLRVCNDCHTVMKFISEIFQRKIIVRDASRFHHFEGGKCSCSEFW 610



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 130/492 (26%), Positives = 213/492 (43%), Gaps = 93/492 (18%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           R  HA +I  G          L+  Y KS  L   R LFDE P+ D+   ++L+AA S S
Sbjct: 23  RRAHARLIKEGLAQHPPAPALLVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLAAVSHS 82

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
           ++ +L   +  +             M++A                   D ++PD+F   S
Sbjct: 83  ESPELVLPLLRR-------------MLSA-------------------DALRPDHFVLAS 110

Query: 155 VLSALALIVEEEKQCM--QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
           + SA A +      C+  Q+H   V S       V ++LI +Y KC          +   
Sbjct: 111 IASATARL---RSLCLGKQLHGHFVASPYSSDDVVKSSLIDMYCKC---------GVPDD 158

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH--RE 270
           AR+VFD +  ++ + WT +++GYV N   D A E    M      AW ALISG+V     
Sbjct: 159 ARKVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSMPGRTLFAWTALISGFVRSGES 218

Query: 271 LKMLMLRIQL--------DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
           +  + L + +        D F  +S I   A+     LG+Q+H+  +R         S+ 
Sbjct: 219 VSAVKLFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGRQLHSLTMRLGFSS----SMI 274

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
           V NA+V +Y KC  ++ AR++F ++  RD++SW  +L                       
Sbjct: 275 VGNAVVDMYSKCSDIHSAREVFEEITGRDIISWTTML----------------------- 311

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
                    G AQ+G  EE   L+ +M L G KP +  F G I +C+  G ++ GRQL  
Sbjct: 312 --------VGEAQHGRAEEAFSLYDRMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFD 363

Query: 443 QLV-HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV-DSVSWNAMIAALGQHGNG 500
            +    G +  L      + + +R G +  A  +  TMP V D  +W ++++A  ++ N 
Sbjct: 364 SMKGEYGINPRLQHYTCYLDLLSRSGHLAEAEELITTMPYVPDEATWASLLSACKKYNNA 423

Query: 501 ARAIELYEQMLK 512
             +I + + +L+
Sbjct: 424 EMSIRVADNLLE 435



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 157/332 (47%), Gaps = 41/332 (12%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L + +H H ++S +   + + + LID+YCK      AR +FD I   + V  T LI+ Y 
Sbjct: 123 LGKQLHGHFVASPYSSDDVVKSSLIDMYCKCGVPDDARKVFDSIVAKNSVMWTALISGYV 182

Query: 93  ASDNVKLAREMFNKTPLKMRDTVF-YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN-F 150
            +     A E+F   P +   T+F + A+I+ +  +    +A++LF DMRRD V  D+ F
Sbjct: 183 LNGRSDEALELFRSMPGR---TLFAWTALISGFVRSGESVSAVKLFVDMRRDGVSIDDAF 239

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
             +S +   A +        Q+H   ++ G      V NA++ +Y KC         S +
Sbjct: 240 VLSSAIGGAADLA-AHVLGRQLHSLTMRLGFSSSMIVGNAVVDMYSKC---------SDI 289

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
            +AR VF+E+  RD +SWTTM+ G  ++   + A    D                     
Sbjct: 290 HSAREVFEEITGRDIISWTTMLVGEAQHGRAEEAFSLYD--------------------- 328

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
            +M++  ++ +E T+  +I AC+++GL + G+Q+    ++ E    P   L      + L
Sbjct: 329 -RMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFDS-MKGEYGINPR--LQHYTCYLDL 384

Query: 331 YWKCGKVNEARDIFNQMPE-RDLVSWNAILSA 361
             + G + EA ++   MP   D  +W ++LSA
Sbjct: 385 LSRSGHLAEAEELITTMPYVPDEATWASLLSA 416



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 75/347 (21%), Positives = 136/347 (39%), Gaps = 67/347 (19%)

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
           G+  + R+ HA+L+  G      A   L++ YA+  ++     +F+  P  D   +++++
Sbjct: 17  GSPRSLRRAHARLIKEGLAQHPPAPALLVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLL 76

Query: 492 AALGQHGNGARAIELYEQMLK-EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
           AA+    +    + L  +ML  + + PD     ++ SA      +  G++    +HG + 
Sbjct: 77  AAVSHSESPELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLGKQ----LHGHFV 132

Query: 551 IPP-GEDHYAR--FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
             P   D   +   ID+ C+ G   +A+ V DS+  K S  +W AL++G  ++G  D   
Sbjct: 133 ASPYSSDDVVKSSLIDMYCKCGVPDDARKVFDSIVAKNSV-MWTALISGYVLNGRSD--- 188

Query: 608 QAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKV 667
             A +LF+ MP    T    + + +   R  ++    KL  D                  
Sbjct: 189 -EALELFRSMP--GRTLFAWTALISGFVRSGESVSAVKLFVD------------------ 227

Query: 668 HVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDM---ESDQKEYAL--STH 722
                                     MR+ G   D  FVL       +D   + L    H
Sbjct: 228 --------------------------MRRDGVSIDDAFVLSSAIGGAADLAAHVLGRQLH 261

Query: 723 SEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIV 769
           S  + + F    + G A V +      C D H+A +   ++ GR+I+
Sbjct: 262 SLTMRLGFSSSMIVGNAVVDMYSK---CSDIHSAREVFEEITGRDII 305


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/559 (39%), Positives = 331/559 (59%), Gaps = 44/559 (7%)

Query: 241 LDAAREFLDGMSENVGVAWNALISGYVHREL---KMLMLR------IQLDEFTYTSVISA 291
           +D+ R+  + M E   V+WN +I+G     L    + M+R      ++ D FT +SV+  
Sbjct: 250 VDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPL 309

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
            A +     GK++H   +R       +  + V ++L+ +Y KC +V ++  +F  + E  
Sbjct: 310 IAENVDISKGKEIHGCSIRQGL----DAEVYVASSLIDMYAKCTRVVDSYRVFTLLTE-- 363

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
                                        R+ +SW  +I+G  QNG  +EGLK F QM +
Sbjct: 364 -----------------------------RDGISWNSIIAGCVQNGLFDEGLKFFRQMLM 394

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
              KP  Y+F+  + +CA L  L  G+QLH  +  +G+D ++   ++L+ MYA+CG +  
Sbjct: 395 AKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRT 454

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
           A  +F+ M   D VSW AMI     HG+   AIEL+EQM  EGI P+ + F+ VL+AC+H
Sbjct: 455 ARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSH 514

Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
           AGLV E  +YF +M   +GI PG +HYA   DLL RAG+  EA D I  +P  P+  +W 
Sbjct: 515 AGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWA 574

Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
            LL+ CR+H N+D+  + A ++ ++ P + G Y+LL+N+Y+   RW +AA+ R  +R  G
Sbjct: 575 TLLSACRVHKNVDMAEKVANRILEVDPKNTGAYILLANIYSAARRWKEAAKWRASLRRTG 634

Query: 652 VKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDME 711
           ++K P CSWIEV NKV+ F+  D +HP  + + + +E L+  M K GYVPDT  V HD+E
Sbjct: 635 IRKTPACSWIEVRNKVYAFMAGDESHPCYEKIREAMEVLMELMEKEGYVPDTSEVHHDVE 694

Query: 712 SDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVR 771
            +QK+Y + +HSE+LA+ FG++  P G T+RV KNLR+C DCH A KF+SK+VGREIVVR
Sbjct: 695 EEQKKYLVCSHSERLAIVFGIINTPAGTTIRVTKNLRVCTDCHTATKFISKIVGREIVVR 754

Query: 772 DGKRFHHFRDGKCSCGDYW 790
           D  RFHHF++G CSCGDYW
Sbjct: 755 DNSRFHHFKNGTCSCGDYW 773



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 194/427 (45%), Gaps = 71/427 (16%)

Query: 88  IAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147
           I   S S +V   R++F   P K  D V +N +I   + N      + + R+M   ++KP
Sbjct: 241 IKDISHSMSVDSVRKIFEMMPEK--DLVSWNTIIAGNARNGLYGETLTMVREMGGANLKP 298

Query: 148 DNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSR 207
           D+FT +SVL  +A  V+  K   ++H   ++ G      V ++LI +Y KC         
Sbjct: 299 DSFTLSSVLPLIAENVDISKG-KEIHGCSIRQGLDAEVYVASSLIDMYAKC--------- 348

Query: 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV 267
           + +  + RVF  + ERD +SW +++ G V+N   D   +F                    
Sbjct: 349 TRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFR------------------ 390

Query: 268 HRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327
               +MLM +I+   ++++S++ ACA+     LGKQ+H Y+ R         ++ + ++L
Sbjct: 391 ----QMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDE----NIFIASSL 442

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWT 387
           V +Y KCG +  AR IF++M  RD+VSW                               T
Sbjct: 443 VDMYAKCGNIRTARQIFDRMRLRDMVSW-------------------------------T 471

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG-RQLHAQLVH 446
            MI G A +G+  + ++LF QM+ EG +P   AF   +T+C+  G ++   +  ++  + 
Sbjct: 472 AMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLD 531

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGNGARAIE 505
            G    +    A+  +  R G +E A      MP   + S W  +++A   H N   A +
Sbjct: 532 FGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEK 591

Query: 506 LYEQMLK 512
           +  ++L+
Sbjct: 592 VANRILE 598



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 119/502 (23%), Positives = 212/502 (42%), Gaps = 89/502 (17%)

Query: 117 YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTV 176
           + ++I  Y+ +   H ++  F  M    + PD+  F SVL A A++++       +H  +
Sbjct: 76  WKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLG-ESLHGYI 134

Query: 177 VKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWT-TMMTGY 235
           ++ G        NAL+++Y K +     S R  +GA+ +V DEM ER     T +++ G 
Sbjct: 135 IRVGLDFDLYTGNALMNMYSK-LRFLKKSGRQRLGAS-QVLDEMTERTRSVRTASVLVG- 191

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
                 +  R+  D  + N  V+  +       RE +  +L I     +    + AC   
Sbjct: 192 ------NQGRKVSDIEAFNYDVSCRS-------REFEAQVLEIDYKPRSEYREMEAC--- 235

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
               LG+Q+                  +++++         V+  R IF  MPE+DLVSW
Sbjct: 236 ---NLGQQIK----------------DISHSM--------SVDSVRKIFEMMPEKDLVSW 268

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           N I                               I+G A+NG   E L +  +M     K
Sbjct: 269 NTI-------------------------------IAGNARNGLYGETLTMVREMGGANLK 297

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P  +  +  +   A    +  G+++H   +  G D+ +   ++LI MYA+C  V  +  V
Sbjct: 298 PDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRV 357

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           F  +   D +SWN++IA   Q+G     ++ + QML   I P   +F +++ AC H   +
Sbjct: 358 FTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTL 417

Query: 536 KEGRRYFETMHGPYGIPPGEDH----YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
             G++    +HG Y    G D      +  +D+  + G    A+ + D +  +     W 
Sbjct: 418 HLGKQ----LHG-YITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVS-WT 471

Query: 592 ALLAGCRIHGNIDLGIQAAEQL 613
           A++ GC +HG+    I+  EQ+
Sbjct: 472 AMIMGCALHGHALDAIELFEQM 493



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 55/97 (56%), Gaps = 6/97 (6%)

Query: 62  KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMI 121
           K L     R  FDE    +I   ++L+  Y+   N++ AR++F++  +++RD V + AMI
Sbjct: 421 KQLHGYITRNGFDE----NIFIASSLVDMYAKCGNIRTARQIFDR--MRLRDMVSWTAMI 474

Query: 122 TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA 158
              + + +   AIELF  M+ + ++P+   F +VL+A
Sbjct: 475 MGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTA 511



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 45/104 (43%)

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
           Y    L+ ++  LF  +     L+W  +I     +G   + L  F  M   G  P    F
Sbjct: 52  YSHINLLHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVF 111

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465
              + +CA L  L  G  LH  ++  G D  L  GNAL+ MY++
Sbjct: 112 PSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSK 155


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 256/713 (35%), Positives = 398/713 (55%), Gaps = 65/713 (9%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           LA  +H       F     +   ++D+Y K   + +A+ +F   P P +    ++I  YS
Sbjct: 132 LALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYS 191

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
              +VK A E+F K P   RDTV +N MI+  S +  G   +  F +M     +P++ T+
Sbjct: 192 KYGSVKKALELFAKMP--ERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTY 249

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            SVLSA   I + E     +H  +V+         +   + VY  C              
Sbjct: 250 ASVLSACTSIYDLEWGA-HLHARIVR---------MEPCLDVYAGC-------------- 285

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
                             ++  Y K   L++AR+  DG++E+  V+W +LI G      +
Sbjct: 286 -----------------GLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQ 328

Query: 273 ---------MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
                    M  + +  D+FT  +V+  C +     +G+Q+HA+ +        + S+PV
Sbjct: 329 EEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGL----DSSVPV 384

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
            NALVT+Y KCG V +A   F  MP RD++SW A+++A+  AG +++A+  F+ M ERN+
Sbjct: 385 ANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNV 444

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
           +SW  M++   Q GY EEGLK++ QM  EG K     F+ +I++CA L  L  G Q+ AQ
Sbjct: 445 ISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVLILGNQILAQ 504

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
               G+ S++S  N+++TMY+RCG +E A  +F+++   + VSWNAM+A   Q+G G + 
Sbjct: 505 AEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKV 564

Query: 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563
           IE++E+ML  G +PD+I++++VLS C+H+G V EG+ YF +M   +GI P  +H+   +D
Sbjct: 565 IEIFEKMLNIGNVPDQISYVSVLSGCSHSGFVSEGQYYFLSMTKDHGISPMSEHFVCMVD 624

Query: 564 LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623
           LL RAG+  +AK++I+ +PFKP+A IW ALLA CRIHGN  L   A + L +L     G+
Sbjct: 625 LLGRAGQLEQAKNLINQMPFKPNAAIWGALLAACRIHGNTKLAELAVKNLLELDAEGPGS 684

Query: 624 YVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAV 683
           Y LL+N+Y+  G+      VRKLMRD+GV+K PGCSWIEVDN+VHVF VDDT HP+ + V
Sbjct: 685 YCLLANIYSESGKIQGVTNVRKLMRDKGVRKNPGCSWIEVDNRVHVFTVDDTNHPQIKDV 744

Query: 684 YKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLP 736
           ++ LE+++ ++ ++    +       M S +     + HSEKLAV   L+ LP
Sbjct: 745 HRMLEEIIKKIEEIKNYANV------MNSGRSH---NYHSEKLAVPLRLISLP 788



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 167/645 (25%), Positives = 273/645 (42%), Gaps = 113/645 (17%)

Query: 12  LANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYART 71
           ++ ++   ++ C     I   +AR +HA +I  G K    + N L+++Y     +  A  
Sbjct: 3   MSQKFYESMKECASLRSIP--IARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYR 60

Query: 72  LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           +F  I  P++ +  T+I+ ++ S  ++ A ++F K P   RD+V +N+M++ Y HN    
Sbjct: 61  VFGGIMFPNVYSWNTMISGFADSGQMREAEKLFEKMP--ERDSVSWNSMMSGYFHNGELE 118

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
           A I+                 +  L  L L        +Q+H    K   G+ T V  ++
Sbjct: 119 ATIKA----------------SGSLGYLKL-------ALQLHGFAEKFDFGIDTCVETSV 155

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           + +Y+KC +  F         A++VF   P      W +M+ GY K   +  A E    M
Sbjct: 156 LDMYIKCGAMDF---------AQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKM 206

Query: 252 SENVGVAWNALIS-----GY----VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGK 302
            E   V+WN +IS     G+    ++  L+M     + +  TY SV+SAC +      G 
Sbjct: 207 PERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGA 266

Query: 303 QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY 362
            +HA ++R E    P   +     L+ +Y KCG++  AR +F+ + E + VSW +++   
Sbjct: 267 HLHARIVRME----PCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGV 322

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
             AG  +EA  LF  MRE  + S                                 +  A
Sbjct: 323 AQAGFQEEALVLFNQMREVPVAS-------------------------------DQFTLA 351

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
             +  C     +  G QLHA  +  G DSS+   NAL+TMYA+CG V  AN  F  MP  
Sbjct: 352 TVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIR 411

Query: 483 DSVSWNAMIAALGQHGNGARA-------------------------------IELYEQML 511
           D +SW AMI A  Q G+  +A                               +++Y QML
Sbjct: 412 DIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQML 471

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571
           +EG+  D ITF T +SAC    ++  G +         G           + +  R G+ 
Sbjct: 472 REGVKTDWITFSTSISACADLAVLILGNQILAQAE-KLGFSSNVSVANSVVTMYSRCGQI 530

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
            EA+ +  S+  K     W A++AG   +G     I+  E++  +
Sbjct: 531 EEAQKMFSSIVMKNLVS-WNAMMAGYAQNGQGRKVIEIFEKMLNI 574



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 134/494 (27%), Positives = 232/494 (46%), Gaps = 49/494 (9%)

Query: 182 GLFTSVL--NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND 239
           GL +S+   N L+++Y  C          L+  A RVF  +   +  SW TM++G+  + 
Sbjct: 34  GLKSSIFLQNHLLNMYSNC---------GLISDAYRVFGGIMFPNVYSWNTMISGFADSG 84

Query: 240 YLDAAREFLDGMSENVGVAWNALISGYVHR-ELKMLMLRIQLDEFTYTSVISACANSGLF 298
            +  A +  + M E   V+WN+++SGY H  EL+              + I A  + G  
Sbjct: 85  QMREAEKLFEKMPERDSVSWNSMMSGYFHNGELE--------------ATIKASGSLGYL 130

Query: 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAI 358
           +L  Q+H +  + +          V  +++ +Y KCG ++ A+ +F + P   L  WN++
Sbjct: 131 KLALQLHGFAEKFDFG----IDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSM 186

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
           +  Y   G + +A  LF  M ER+ +SW  MIS L+Q+G+G E L  F +M  +GF+P  
Sbjct: 187 IYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNS 246

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478
             +A  +++C  +  LE G  LHA++V       + AG  LI MYA+CG +E+A  VF+ 
Sbjct: 247 MTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDG 306

Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG 538
           +   ++VSW ++I  + Q G    A+ L+ QM +  +  D+ T  TVL  C    L ++ 
Sbjct: 307 LTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVC----LSQKD 362

Query: 539 RRYFETMHGPYGIPPGEDHYA----RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
               E +H  + I  G D         + +  + G   +A    + +P +     W A++
Sbjct: 363 ISIGEQLHA-HTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIIS-WTAMI 420

Query: 595 AGCRIHGNIDLGIQAAEQLFQLMPH-HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653
                 G+++     A + F  MP  +  ++  +   Y   G W++  +V   M   GVK
Sbjct: 421 TAFSQAGDVE----KAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVK 476

Query: 654 KEPGCSWIEVDNKV 667
            +    WI     +
Sbjct: 477 TD----WITFSTSI 486



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 164/350 (46%), Gaps = 48/350 (13%)

Query: 17  ASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEI 76
           A+ L +C  +  I  S+   +HAH I+ G      + N L+ +Y K   +  A   F+ +
Sbjct: 351 ATVLGVCLSQKDI--SIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELM 408

Query: 77  PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
           P  DI++ T +I A+S + +V+ ARE F+K P   R+ + +N+M+  Y         +++
Sbjct: 409 PIRDIISWTAMITAFSQAGDVEKAREYFDKMP--ERNVISWNSMLATYMQRGYWEEGLKV 466

Query: 137 FRDMRRDDVKPDNFTFTSVLSA---LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
           +  M R+ VK D  TF++ +SA   LA+++   +   Q      K G     SV N++++
Sbjct: 467 YIQMLREGVKTDWITFSTSISACADLAVLILGNQILAQAE----KLGFSSNVSVANSVVT 522

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
           +Y +C           +  A+++F  +  ++ +SW  MM GY +N       E  +    
Sbjct: 523 MYSRC---------GQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFE---- 569

Query: 254 NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
                             KML +    D+ +Y SV+S C++SG    G+     + +   
Sbjct: 570 ------------------KMLNIGNVPDQISYVSVLSGCSHSGFVSEGQYYFLSMTKDHG 611

Query: 314 -KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
             P  E  +     +V L  + G++ +A+++ NQMP + +   W A+L+A
Sbjct: 612 ISPMSEHFV----CMVDLLGRAGQLEQAKNLINQMPFKPNAAIWGALLAA 657



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 29/214 (13%)

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM- 479
           F  ++  CA L ++   R+LHAQL+  G  SS+   N L+ MY+ CG++  A  VF  + 
Sbjct: 7   FYESMKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIM 66

Query: 480 -PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG 538
            PNV   SWN MI+     G    A +L+E+M +     D +++ +++S   H G ++  
Sbjct: 67  FPNV--YSWNTMISGFADSGQMREAEKLFEKMPER----DSVSWNSMMSGYFHNGELEAT 120

Query: 539 RR------YFE---TMHG-----PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584
            +      Y +    +HG      +GI    +     +D+  + G    A+ V    P  
Sbjct: 121 IKASGSLGYLKLALQLHGFAEKFDFGIDTCVE--TSVLDMYIKCGAMDFAQKVFCRTP-N 177

Query: 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
           PS   W +++ G   +G+    ++ A +LF  MP
Sbjct: 178 PSLFCWNSMIYGYSKYGS----VKKALELFAKMP 207


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/518 (43%), Positives = 314/518 (60%), Gaps = 4/518 (0%)

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           M +  +  D FT + V+ AC        GK +H    +         +L + N ++ LY 
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGS----NLFLQNMILNLYG 56

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
            CG++ +A  +F +MP+RD V+WN +++     G ID A   F  M  +N+ SWT MISG
Sbjct: 57  LCGEMGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISG 116

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
             Q G   E + LF ++  E  +P +      + +CA LG L+ GR +H     SG+  +
Sbjct: 117 FVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRN 176

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           +   N LI MY +CG +E A  VF  M     VSW+AMIA L  HG    A+ L+ +M+K
Sbjct: 177 VHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIK 236

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
            G+ P+ +TF+ +L AC+H GL+ EGRR+F +M   YG+ P  +HY   +DL  RAG   
Sbjct: 237 LGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLE 296

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632
           EA + I S+P KP+  +W ALL GC++H NIDL  +A + L +L P + G YV++SN+YA
Sbjct: 297 EAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYA 356

Query: 633 NLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVL 692
              RW+DAARVRKLM+DRGVKK  G S I V+  VH F+  D  HP+A+ + K  ++L++
Sbjct: 357 EAERWEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLLV 416

Query: 693 EMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGD 752
           +M++ GY P T  VL DME  +KE  L  HSEKLAV FGLM  P G  +R++KNLR+C D
Sbjct: 417 KMKRRGYAPKTSVVLLDMEEKEKEKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRVCED 476

Query: 753 CHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           CH A K +S +V REI+VRD  RFH FRDG+CSC D+W
Sbjct: 477 CHAALKIISGIVSREIIVRDRNRFHCFRDGQCSCRDFW 514



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/384 (28%), Positives = 179/384 (46%), Gaps = 60/384 (15%)

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           MR  DV PD FT + VL A  L + +      +H    K G G    + N ++++Y  C 
Sbjct: 1   MRLFDVLPDTFTCSFVLKA-CLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLC- 58

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                     MG A  +F++MP+RD ++W  ++    K   +D A  F   M      +W
Sbjct: 59  --------GEMGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSW 110

Query: 260 NALISGYVH----RELKMLMLR-----IQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
            ++ISG+V      E   L ++     ++ +E T  SV++ACA+ G   LG+ VH Y  +
Sbjct: 111 TSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTK 170

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
           +  K     ++ V N L+ +Y KCG +  AR +F +M ER +VSW+A++           
Sbjct: 171 SGFKR----NVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMI----------- 215

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
                               +GLA +G  EE L LFS+M   G KP    F G + +C+ 
Sbjct: 216 --------------------AGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSH 255

Query: 431 LGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWN 488
           +G ++ GR+  A +    G    +     ++ +++R G++E A+    +MP   + V W 
Sbjct: 256 MGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWG 315

Query: 489 AMIAALGQHGNGARAIELYEQMLK 512
           A++     H N    I+L E+ +K
Sbjct: 316 ALLGGCKVHKN----IDLAEEAIK 335



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 173/386 (44%), Gaps = 41/386 (10%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            +++H      GF     + N ++++Y    ++  A  LF+++PQ D V    +IA  + 
Sbjct: 29  GKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLLFEKMPQRDAVTWNIVIAQLAK 88

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
             ++  A   F + P K  +   + +MI+ +      + AI+LF  +  + V+P+  T  
Sbjct: 89  RGDIDGAYGFFLRMPNK--NVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVV 146

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           SVL+A A + + +   + +H    KSG      V N LI +YVKC           +  A
Sbjct: 147 SVLAACADLGDLDLGRI-VHEYSTKSGFKRNVHVCNTLIDMYVKC---------GCLENA 196

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           RRVF EM ER  +SW+ M+ G   +     A E L   SE                   M
Sbjct: 197 RRVFYEMEERTVVSWSAMIAGLAMH---GQAEEALCLFSE-------------------M 234

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
           + L ++ +  T+  ++ AC++ GL   G++  A  +  +    P+  +     +V L+ +
Sbjct: 235 IKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFAS-MTADYGVIPQ--IEHYGCVVDLFSR 291

Query: 334 CGKVNEARDIFNQMPER-DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS--WTVMI 390
            G + EA +    MP + + V W A+L        ID A+   + + E + L+  + V+I
Sbjct: 292 AGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVI 351

Query: 391 SGL-AQNGYGEEGLKLFSQMRLEGFK 415
           S + A+    E+  ++   M+  G K
Sbjct: 352 SNIYAEAERWEDAARVRKLMKDRGVK 377



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 86/226 (38%), Gaps = 51/226 (22%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R VH +   SGFK   H+ N LID+Y K   L  AR +F E+ +              
Sbjct: 160 LGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEE-------------- 205

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                              R  V ++AMI   + +     A+ LF +M +  VKP+  TF
Sbjct: 206 -------------------RTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTF 246

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV----YVKCVSSPFVSSRS 208
             +L A +            H  ++  G   F S+      +    +  CV   F S   
Sbjct: 247 IGLLHACS------------HMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLF-SRAG 293

Query: 209 LMGAARRVFDEMPER-DELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
           L+  A      MP + + + W  ++ G   +  +D A E +  +SE
Sbjct: 294 LLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSE 339


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/611 (38%), Positives = 351/611 (57%), Gaps = 49/611 (8%)

Query: 202 PFVSSRSL----------MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           PFVSSR L          +G AR +FD +  R  + W T++  YV+N +        DG+
Sbjct: 48  PFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSH------DGI 101

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
                     L    VH  L         D FT   VI  CA  G+ + GKQ+H   L+ 
Sbjct: 102 ---------VLFHELVHEYLP--------DNFTLPCVIKGCARLGVVQEGKQIHGLALKI 144

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD-----------LVSWNAILS 360
                    + V  +LV +Y KCG+++ AR +F+ M ++D           LVSWNA+++
Sbjct: 145 GFGS----DVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMIN 200

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
            Y+ +G  D A  LF  M   +L++W +MI+G   NG   + +K+F  M   G +P    
Sbjct: 201 GYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHAT 260

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
               +++ +GL  L  GR +H+ +  +G++     G +LI MYA+CG +E+A  VF  + 
Sbjct: 261 LVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQ 320

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
                 W A+I  LG HG    A+ L+ +M K G+ P+ I F+ VL+ACNHAGLV +GR+
Sbjct: 321 KKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQ 380

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
           YF+ M   Y I P  +HY   +D+LCRAG   EAK+ I+++P  P+  IW +LL G R H
Sbjct: 381 YFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNH 440

Query: 601 GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSW 660
           G ID+G  AA+++ ++ P   G Y+LLSNMYA  G W+  + VR++M  RG +K+PGCS 
Sbjct: 441 GKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSS 500

Query: 661 IEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESD-QKEYAL 719
           +E    +H F+V D +HP+ + +Y  + ++  +++ +G+VPDT  VL  +E + +KE  L
Sbjct: 501 VEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAEL 560

Query: 720 STHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHF 779
             HSE+LA+AFGL+ +  G  +R++KNLR+C DCH+  K +SK+  REI+VRD  RFHHF
Sbjct: 561 ENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHF 620

Query: 780 RDGKCSCGDYW 790
           ++G CSC DYW
Sbjct: 621 KNGSCSCMDYW 631



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 123/500 (24%), Positives = 214/500 (42%), Gaps = 90/500 (18%)

Query: 25  PRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVAR 84
           P + +   L  ++H  +  +   P+E     +  ++  SLK      +F+    P + +R
Sbjct: 6   PFHSLQQYLPHNLHLSLFQTCSAPQE-----VEQLHAFSLK----TAIFN---HPFVSSR 53

Query: 85  TTLIAAYSAS--DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR 142
             L+A YS    +++  AR +F++  ++ R  + +N +I  Y  N   H  I LF ++  
Sbjct: 54  --LLALYSDPKINDLGYARSIFDR--IQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVH 109

Query: 143 DDVKPDNFTFTSVLSALAL--IVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVS 200
           + + PDNFT   V+   A   +V+E KQ   +H   +K G G    V  +L+++Y KC  
Sbjct: 110 EYL-PDNFTLPCVIKGCARLGVVQEGKQ---IHGLALKIGFGSDVFVQGSLVNMYSKC-- 163

Query: 201 SPFVSSRSLMGAARRVFDEMPERDEL-----------SWTTMMTGYVKNDYLDAAREFLD 249
                    +  AR+VFD M ++D +           SW  M+ GY+K+   D+A E   
Sbjct: 164 -------GEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFY 216

Query: 250 GMSENVGVAWNALISGY-----VHRELKMLMLRIQL----DEFTYTSVISACANSGLFRL 300
            M     V WN +I+GY         +KM  + ++L       T  SV+SA +   +   
Sbjct: 217 QMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGK 276

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           G+ +H+Y+     K   E    +  +L+ +Y KCG +  A  +F  + ++ +  W AI  
Sbjct: 277 GRWIHSYM----EKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAI-- 330

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
                                        I GL  +G     L LF +M   G KP    
Sbjct: 331 -----------------------------IVGLGIHGMANHALALFLEMCKTGLKPNAII 361

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
           F G + +C   G +++GRQ    +++    + +L     L+ +  R G +E A      M
Sbjct: 362 FIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENM 421

Query: 480 P-NVDSVSWNAMIAALGQHG 498
           P + + V W +++     HG
Sbjct: 422 PISPNKVIWMSLLGGSRNHG 441



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 159/382 (41%), Gaps = 51/382 (13%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTL------ 87
            + +H   +  GF     +   L+++Y K  ++  AR +FD +   D+V   +L      
Sbjct: 134 GKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLV 193

Query: 88  -----IAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR 142
                I  Y  S +   A E+F + P+   D V +N MI  Y  N     A+++F  M +
Sbjct: 194 SWNAMINGYMKSGDFDSALELFYQMPI--WDLVTWNLMIAGYELNGQFMDAVKMFFMMLK 251

Query: 143 DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSP 202
              +P + T  SVLSA++ +    K    +H  + K+G  L   +  +LI +Y KC    
Sbjct: 252 LGSRPSHATLVSVLSAVSGLAVLGKG-RWIHSYMEKNGFELDGILGTSLIEMYAKC---- 306

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL 262
                  + +A  VF  + ++    WT ++ G   +   + A      M +  G+  NA+
Sbjct: 307 -----GCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKT-GLKPNAI 360

Query: 263 ISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
           I                     +  V++AC ++GL   G+Q +  ++  E K  P  +L 
Sbjct: 361 I---------------------FIGVLNACNHAGLVDDGRQ-YFDMMMNEYKIEP--TLE 396

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
               LV +  + G + EA++    MP   + V W ++L    + G ID  +  + A R  
Sbjct: 397 HYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGE--YAAQRVI 454

Query: 382 NLLSWTVMISGLAQNGYGEEGL 403
            +   T+    L  N Y   G+
Sbjct: 455 EVAPETIGCYILLSNMYAASGM 476


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/560 (40%), Positives = 337/560 (60%), Gaps = 17/560 (3%)

Query: 241 LDAAREFLDGMSENVGVAWNALISGYVHREL--------KMLMLR-IQLDEFTYTSVISA 291
           L  AR   + +        N++I GY ++ L        +++ML+ +  D FT+ S+  +
Sbjct: 28  LPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKS 87

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           C   G+   GKQ+H +      K        + N L+ +Y  CG +  AR +F++M  + 
Sbjct: 88  C---GVLCEGKQLHCH----STKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKS 140

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMR-ERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           +VSW  ++ AY    L  EA  LF  M    NL  W +MI+G  ++   EE L LF++M+
Sbjct: 141 VVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQ 200

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
           L G K      A  + +C  LGALE G+ LH  +     +  ++ G AL+ MYA+CG +E
Sbjct: 201 LSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIE 260

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
           +A  VF  MP  D ++W A+I  L   G G +A+EL+ +M    + PD ITF+ VL+AC+
Sbjct: 261 SAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACS 320

Query: 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590
           HAGLV EG  YF +M   YGI P  +HY   +D+L RAG+ +EA+D+I ++P  P   + 
Sbjct: 321 HAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVL 380

Query: 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650
             LL+ CRIHGN+ +  +AA+QL +L P + GTYVLLSN+Y+++  W+ A ++R+LM +R
Sbjct: 381 VGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVER 440

Query: 651 GVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDM 710
            +KK PGCS IEV   VH F+  D +HP++  +Y+ L+ ++  ++  GYVPD   VL DM
Sbjct: 441 NIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDM 500

Query: 711 ESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVV 770
           +  +KE  LS HSEKLA+AFGL+    G  +RV+KNLR+C DCH+A KF+S+V  REI+V
Sbjct: 501 DEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIV 560

Query: 771 RDGKRFHHFRDGKCSCGDYW 790
           RD  RFHHF  G CSC D+W
Sbjct: 561 RDRNRFHHFTKGSCSCRDFW 580



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 127/479 (26%), Positives = 203/479 (42%), Gaps = 108/479 (22%)

Query: 79  PDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFY-NAMITAYSHNSNGHAAIELF 137
           P   ++     A   S ++  AR +FN+ P     T F  N++I  Y++ +    AI  +
Sbjct: 10  PFSASKIVAFCALHDSGSLPYARLVFNQIP---NPTTFTCNSIIRGYTNKNLPRQAILFY 66

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           + M    + PD FTF S+  +  ++ E +    Q+HC   K G      + N L+++Y  
Sbjct: 67  QLMMLQGLDPDRFTFPSLFKSCGVLCEGK----QLHCHSTKLGFASDAYIQNTLMNMYSN 122

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM--SENV 255
           C           + +AR+VFD+M  +  +SW TM+  Y + D    A +    M  + N+
Sbjct: 123 C---------GCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNL 173

Query: 256 GVAWNALISGYV----HRELKMLMLRIQL-----DEFTYTSVISACANSGLFRLGKQVHA 306
              WN +I+G+V    + E   L   +QL     D+ T  S++ AC + G   LGK +H 
Sbjct: 174 -FCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHV 232

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366
           Y+     K   E  + +  ALV +Y KCG +  A  +F +MPE+D+++W           
Sbjct: 233 YI----EKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTW----------- 277

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
                               T +I GLA  G G + L+LF +M++   KP    F G + 
Sbjct: 278 --------------------TALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLA 317

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
           +C+           HA LV+ G                           FN+MPN   + 
Sbjct: 318 ACS-----------HAGLVNEGI------------------------AYFNSMPNKYGIQ 342

Query: 487 -----WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN-HAGLVKEGR 539
                +  M+  LG+ G  A A +L + M    + PD    + +LSAC  H  LV   R
Sbjct: 343 PSIEHYGCMVDMLGRAGRIAEAEDLIQNM---PMAPDYFVLVGLLSACRIHGNLVVAER 398



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 155/350 (44%), Gaps = 48/350 (13%)

Query: 1   MMMKNADYIR-TLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDI 59
           MM++  D  R T  + + S   LC+          + +H H    GF    +I N L+++
Sbjct: 69  MMLQGLDPDRFTFPSLFKSCGVLCE---------GKQLHCHSTKLGFASDAYIQNTLMNM 119

Query: 60  YCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVF-YN 118
           Y     LV AR +FD++    +V+  T+I AY+  D    A ++F +  +++   +F +N
Sbjct: 120 YSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRR--MEIASNLFCWN 177

Query: 119 AMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVK 178
            MI  +  +S+   A+ LF +M+   VK D  T  S+L A   +   E     +H  + K
Sbjct: 178 IMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELG-KWLHVYIEK 236

Query: 179 SGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKN 238
               +  ++  AL+ +Y KC S         + +A RVF EMPE+D ++WT ++ G    
Sbjct: 237 EKIEVDVALGTALVDMYAKCGS---------IESAMRVFQEMPEKDVMTWTALIVGLAMC 287

Query: 239 DYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLF 298
                A E                         +M M  ++ D  T+  V++AC+++GL 
Sbjct: 288 GQGLKALELFH----------------------EMQMSEVKPDAITFVGVLAACSHAGLV 325

Query: 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
             G    AY      K   + S+     +V +  + G++ EA D+   MP
Sbjct: 326 NEGI---AYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMP 372



 Score = 45.1 bits (105), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G +  A  VFN +PN  + + N++I          +AI  Y+ M+ +G+ PDR TF ++ 
Sbjct: 26  GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLF 85

Query: 527 SACNHAGLVKEGRR 540
            +C   G++ EG++
Sbjct: 86  KSC---GVLCEGKQ 96


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 241/680 (35%), Positives = 389/680 (57%), Gaps = 41/680 (6%)

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMH 173
           T F N ++  +S        + L+  +RR+    D F+F  +L A++ +       + + 
Sbjct: 80  TRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALN---LGLE 136

Query: 174 CTVVKSGTGLFTS---VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
              + S  G F +   + +ALI++Y  C           +  AR +FD+M  RD ++W  
Sbjct: 137 IHGLASKFGFFHADPFIQSALIAMYAAC---------GRIMDARFLFDKMSHRDVVTWNI 187

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           M+ GY +N + D   +  + M  + G   +A+I                       +V+S
Sbjct: 188 MIDGYSQNAHYDHVLKLYEEMKTS-GTEPDAII---------------------LCTVLS 225

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           ACA++G    GK +H ++     +        +  +LV +Y  CG ++ AR++++Q+P +
Sbjct: 226 ACAHAGNLSYGKAIHQFIKDNGFRVGSH----IQTSLVNMYANCGAMHLAREVYDQLPSK 281

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
            +V   A+LS Y   G++ +A+ +F+ M E++L+ W+ MISG A++    E L+LF++M+
Sbjct: 282 HMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQ 341

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
                P        I++CA +GAL   + +H     +G+  +L   NALI MYA+CG + 
Sbjct: 342 RRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLV 401

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
            A  VF  MP  + +SW++MI A   HG+   AI L+ +M ++ I P+ +TF+ VL AC+
Sbjct: 402 KAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACS 461

Query: 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590
           HAGLV+EG+++F +M   + I P  +HY   +DL CRA    +A ++I+++PF P+  IW
Sbjct: 462 HAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIW 521

Query: 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650
            +L++ C+ HG I+LG  AA +L +L P H G  V+LSN+YA   RWDD   VRKLM+ +
Sbjct: 522 GSLMSACQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHK 581

Query: 651 GVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDM 710
           GV KE  CS IEV+N+VHVF++ D  H ++  +YK L+ +V +++ +GY P T  +L D+
Sbjct: 582 GVSKEKACSRIEVNNEVHVFMMADRYHKQSDEIYKKLDAVVSQLKLVGYTPSTSGILVDL 641

Query: 711 ESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVV 770
           E ++K+  +  HSEKLA+ +GL+     + +R++KNLRIC DCH+  K +SKV   EIV+
Sbjct: 642 EEEEKKEVVLWHSEKLALCYGLIGERKESCIRIVKNLRICEDCHSFMKLVSKVHRIEIVM 701

Query: 771 RDGKRFHHFRDGKCSCGDYW 790
           RD  RFHHF  G CSC DYW
Sbjct: 702 RDRTRFHHFNGGICSCRDYW 721



 Score =  177 bits (450), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 131/463 (28%), Positives = 221/463 (47%), Gaps = 68/463 (14%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D   ++ LIA Y+A   +  AR +F+K  +  RD V +N MI  YS N++    ++L+ +
Sbjct: 150 DPFIQSALIAMYAACGRIMDARFLFDK--MSHRDVVTWNIMIDGYSQNAHYDHVLKLYEE 207

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M+    +PD     +VLSA A           +H  +  +G  + + +  +L+++Y  C 
Sbjct: 208 MKTSGTEPDAIILCTVLSACAH-AGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANC- 265

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                     M  AR V+D++P +  +  T M++GY K   +  AR   D M E   V W
Sbjct: 266 --------GAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCW 317

Query: 260 NALISGYV--HRELKMLML-------RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
           +A+ISGY   ++ L+ L L       RI  D+ T  SVISACAN G     K +H Y  +
Sbjct: 318 SAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADK 377

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
                T    LP+NNAL+ +Y KCG + +AR++F  MP ++++SW+++++A+   G  D 
Sbjct: 378 NGFGRT----LPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADS 433

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
           A +LF  M+E+N+                               +P    F G + +C+ 
Sbjct: 434 AIALFHRMKEQNI-------------------------------EPNGVTFIGVLYACSH 462

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAG-NALITMYARCGVVEAANCVFNTMP-NVDSVSWN 488
            G +E G++  + +++    S        ++ +Y R   +  A  +  TMP   + + W 
Sbjct: 463 AGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWG 522

Query: 489 AMIAALGQHGNGARAIELYE----QMLKEGILPDRITFLTVLS 527
           ++++A   HG     IEL E    ++L+  + PD    L VLS
Sbjct: 523 SLMSACQNHGE----IELGEFAATRLLE--LEPDHDGALVVLS 559



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 166/339 (48%), Gaps = 38/339 (11%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           S  +++H  +  +GF+   HI   L+++Y     +  AR ++D++P   +V  T +++ Y
Sbjct: 234 SYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGY 293

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
           +    V+ AR +F++  +  +D V ++AMI+ Y+ +     A++LF +M+R  + PD  T
Sbjct: 294 AKLGMVQDARFIFDR--MVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQIT 351

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             SV+SA A  V    Q   +H    K+G G    + NALI +Y KC +         + 
Sbjct: 352 MLSVISACA-NVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGN---------LV 401

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            AR VF+ MP ++ +SW++M+  +  +   D+A      M E                  
Sbjct: 402 KAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQ----------------- 444

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                 I+ +  T+  V+ AC+++GL   G++  + ++  E + +P+        +V LY
Sbjct: 445 -----NIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMI-NEHRISPQREH--YGCMVDLY 496

Query: 332 WKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLID 369
            +   + +A ++   MP   +++ W +++SA  + G I+
Sbjct: 497 CRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIE 535


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 237/657 (36%), Positives = 373/657 (56%), Gaps = 59/657 (8%)

Query: 146 KPDNFTFTSVLSALALI--VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
           KP   T+ +++   +    +EE K+   +H  +  SG      + N ++ +Y KC S   
Sbjct: 84  KPPASTYCNLIQVCSQTRALEEGKK---VHEHIRTSGFVPGIVIWNRILGMYAKCGS--- 137

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
                 +  AR+VFDEMPERD  SW  M+ GY +   L+ AR   D M E    +W A++
Sbjct: 138 ------LVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMPERDSYSWTAMV 191

Query: 264 SGYVHRE-------LKMLMLRI---QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
           +GYV ++       L  LM R+   + + FT +S ++A A     R GK++H +++R   
Sbjct: 192 TGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKEIHGHIVRAGL 251

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
                                              + D V W++++  Y   G IDEA++
Sbjct: 252 -----------------------------------DSDEVLWSSLMDMYGKCGCIDEARN 276

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
           +F+ + +++++SWT MI    ++    EG  LFS++     +P +Y F+G + +CA L  
Sbjct: 277 IFDKIIDKDVVSWTSMIDRYFKSSRWREGFSLFSELIGSCERPNEYTFSGVLNACADLTT 336

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
            E GRQ+H  +   G+D    A ++LI MY +CG +E+A  V +  P  D VS  ++I  
Sbjct: 337 EELGRQVHGYMTRVGFDPYSFASSSLIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGG 396

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
             Q+G    A++ ++ +LK G  PD +TF+ VLSAC HAGLV++G  +F ++   + +  
Sbjct: 397 YAQNGKPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTH 456

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
             DHY   +DLL R+G+F + K V+  +P KPS  +W ++L GC  +GNIDL  +AA++L
Sbjct: 457 TSDHYTCLVDLLARSGRFEQLKSVLSEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQEL 516

Query: 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVD 673
           F++ P +  TYV ++N+YA  G+W++  ++RK M++ G+ K+PG SW E+  K HVF+  
Sbjct: 517 FKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGITKKPGSSWTEIKRKRHVFIAA 576

Query: 674 DTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLM 733
           DT+HP    + ++L +L  +M++ GYVP T  VLHD+E +QKE  L  HSEKLAVAF ++
Sbjct: 577 DTSHPMYNQIIEFLGELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAIL 636

Query: 734 KLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
               G  ++V KNLR C DCH+A KF+SK+  R+I +RD  RFH F +G+CSC DYW
Sbjct: 637 STEEGTAIKVFKNLRSCVDCHSAIKFISKITKRKITIRDSTRFHCFENGQCSCRDYW 693



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 139/534 (26%), Positives = 249/534 (46%), Gaps = 87/534 (16%)

Query: 13  ANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTL 72
           A+ Y + +Q+C     +     + VH H+ +SGF P   I NR++ +Y K   LV AR +
Sbjct: 87  ASTYCNLIQVCSQTRALEE--GKKVHEHIRTSGFVPGIVIWNRILGMYAKCGSLVDARKV 144

Query: 73  FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
           FDE+P+ D+ +   ++  Y+    ++ AR +F++ P   RD+  + AM+T Y        
Sbjct: 145 FDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMP--ERDSYSWTAMVTGYVKKDQPEE 202

Query: 133 AIELFRDMRR-DDVKPDNFTFTSVLSALALIVEEEKQCM----QMHCTVVKSGTGLFTSV 187
           A+ L+  M+R  + KP+ FT +S ++A A I     +C+    ++H  +V++G      +
Sbjct: 203 ALVLYSLMQRVPNSKPNIFTVSSAVAAAAAI-----KCIRRGKEIHGHIVRAGLDSDEVL 257

Query: 188 LNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREF 247
            ++L+ +Y KC           +  AR +FD++ ++D +SWT+M+  Y K+      RE 
Sbjct: 258 WSSLMDMYGKC---------GCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRW---REG 305

Query: 248 LDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY 307
               SE +G                        +E+T++ V++ACA+     LG+QVH Y
Sbjct: 306 FSLFSELIGSCERP-------------------NEYTFSGVLNACADLTTEELGRQVHGY 346

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367
           + R    P   +S   +++L+ +Y KCG +  AR + +  P+ DLVS  +++  Y     
Sbjct: 347 MTRVGFDP---YSF-ASSSLIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGY----- 397

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
                                     AQNG  +E LK F  +   G KP    F   +++
Sbjct: 398 --------------------------AQNGKPDEALKYFDLLLKSGTKPDHVTFVNVLSA 431

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGN--ALITMYARCGVVEAANCVFNTMPNVDS- 484
           C   G +E G +    +    +D + ++ +   L+ + AR G  E    V + MP   S 
Sbjct: 432 CTHAGLVEKGLEFFYSITEK-HDLTHTSDHYTCLVDLLARSGRFEQLKSVLSEMPMKPSK 490

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKE 537
             W +++     +GN   A E  +++ K  I P+  +T++T+ +    AG  +E
Sbjct: 491 FLWASVLGGCSTYGNIDLAEEAAQELFK--IEPENPVTYVTMANIYAAAGKWEE 542



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
           G++ L+   Q+     KP    +   I  C+   ALE G+++H  +  SG+   +   N 
Sbjct: 68  GQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNR 127

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           ++ MYA+CG +  A  VF+ MP  D  SWN M+    + G    A  L+++M      P+
Sbjct: 128 ILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEM------PE 181

Query: 519 RITF 522
           R ++
Sbjct: 182 RDSY 185



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 99/218 (45%), Gaps = 10/218 (4%)

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
           L+ EA  L    ++    ++  +I   +Q    EEG K+   +R  GF P    +   + 
Sbjct: 71  LLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRILG 130

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
             A  G+L + R++  ++     +  + + N ++  YA  G++E A  +F+ MP  DS S
Sbjct: 131 MYAKCGSLVDARKVFDEMP----ERDVCSWNVMVNGYAEVGLLEEARNLFDEMPERDSYS 186

Query: 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546
           W AM+    +      A+ LY  M +  +   +    TV SA   A  +K  RR  E +H
Sbjct: 187 WTAMVTGYVKKDQPEEALVLYSLMQR--VPNSKPNIFTVSSAVAAAAAIKCIRRGKE-IH 243

Query: 547 GPY---GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581
           G     G+   E  ++  +D+  + G   EA+++ D +
Sbjct: 244 GHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKI 281


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 258/707 (36%), Positives = 401/707 (56%), Gaps = 58/707 (8%)

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
           D +  A  +F    ++  + + +N MI  ++ +S+  +++ L+  M    + P+++TF  
Sbjct: 12  DGLPYATSVFET--IQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPF 69

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           +L + A   +   +  Q+H  V+K G  L   V  +LIS+YV+            +  A 
Sbjct: 70  LLKSCAK-SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQ---------NWRLEDAY 119

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR----- 269
           +VFD    RD +S+T ++TGY     + +A++  D +     V+WNA+ISGY        
Sbjct: 120 KVFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKE 179

Query: 270 --EL--KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
             EL  +M+ + ++ DE TY +V+SACA+SG   LG+QVH+++         + +L + N
Sbjct: 180 ALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWV----DDHGFDSNLKIVN 235

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
           AL+ LY KCG+V                               + A  LF+ +  ++++S
Sbjct: 236 ALIDLYSKCGEV-------------------------------ETACGLFQGLSYKDVIS 264

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
           W  +I G       +E L LF +M   G  P D      + +CA LGA++ GR +H  + 
Sbjct: 265 WNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYID 324

Query: 446 H--SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
               G  ++ S   +LI MYA+CG +EAA+ VFN+M +    SWNAMI     HG    +
Sbjct: 325 KRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADAS 384

Query: 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563
            +L+ +M K GI PD ITF+ +LSAC+H+G++  GR  F +M   Y + P  +HY   ID
Sbjct: 385 FDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMID 444

Query: 564 LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623
           LL  +G F EA+++I+++  +P   IW +LL  C++HGN++L    A+ L ++ P +  +
Sbjct: 445 LLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIEPENPSS 504

Query: 624 YVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAV 683
           Y+LLSN+YA+ GRW+D AR+R L+  + +KK PGCS IEVD+ V  F+V D  HP+ + +
Sbjct: 505 YILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVFEFVVGDKFHPQNREI 564

Query: 684 YKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRV 743
           Y  LE++ + + + G+VPDT  VL +ME + KE AL  HSEKLA+AFGL+    G  + +
Sbjct: 565 YGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTI 624

Query: 744 LKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +KNLR+C +CH A K +SK+  REIV RD  RFHHFRDG CSC DYW
Sbjct: 625 VKNLRVCRNCHEATKLLSKIYKREIVARDRTRFHHFRDGVCSCNDYW 671



 Score =  172 bits (435), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 136/518 (26%), Positives = 226/518 (43%), Gaps = 71/518 (13%)

Query: 12  LANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYART 71
           L N Y     L       T +  + +H  ++  GF    ++   LI +Y ++ +L  A  
Sbjct: 61  LPNSYTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYK 120

Query: 72  LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           +FD     D+V+ T LI  Y++  +++ A+++F++ P+K  D V +NAMI+ Y+      
Sbjct: 121 VFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVK--DVVSWNAMISGYAETGCYK 178

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
            A+ELF +M + +V+PD  T+ +VLSA A     E    Q+H  V   G      ++NAL
Sbjct: 179 EALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELG-RQVHSWVDDHGFDSNLKIVNAL 237

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           I +Y KC           +  A  +F  +  +D +SW T++ GY   +    A      M
Sbjct: 238 IDLYSKC---------GEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM 288

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
                     L SG    ++ ML            SV+ ACA+ G   +G+ +H Y+ + 
Sbjct: 289 ----------LRSGETPNDVTML------------SVLPACAHLGAIDIGRWIHVYIDKR 326

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
               T   SL    +L+ +Y KCG +  A  +FN M  + L SWNA++  +         
Sbjct: 327 LKGVTNASSL--RTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGF--------- 375

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
                                 A +G  +    LFS+MR  G +P D  F G +++C+  
Sbjct: 376 ----------------------AMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHS 413

Query: 432 GALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNA 489
           G L+ GR +   +         L     +I +    G+ + A  + NTM    D V W +
Sbjct: 414 GMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCS 473

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
           ++ A   HGN   A    + ++K  I P+  +   +LS
Sbjct: 474 LLKACKMHGNVELAESFAQNLIK--IEPENPSSYILLS 509


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 269/778 (34%), Positives = 397/778 (51%), Gaps = 114/778 (14%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           LIA Y    ++  AR +F+   ++  DTV +N++I+A+    N   A+ LFR M+   V 
Sbjct: 186 LIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVA 245

Query: 147 PDNFTFTSVLSALALIVEEE---KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
            + +TF + L      VE+    K  M +H  V+KS       V NALI++Y KC     
Sbjct: 246 SNTYTFVAALQG----VEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKC----- 296

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND-YLDAAREFLDGMSENVGVAWNAL 262
                 M  A RVF+ M  RD +SW T+++G V+N+ Y DA   F D   +N G      
Sbjct: 297 ----GRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRD--MQNSGQ----- 345

Query: 263 ISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
                           + D+ +  ++I+A   SG    GK+VHAY +R       + ++ 
Sbjct: 346 ----------------KPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGL----DSNMQ 385

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF------- 375
           + N LV +Y KC  V      F  M E+DL+SW  I++ Y       EA +LF       
Sbjct: 386 IGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKG 445

Query: 376 ---------------EAMRERNLLSWT-----------VMISGLAQNGYGEEG------- 402
                            ++ RN +              +M+     N YGE G       
Sbjct: 446 MDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYARR 505

Query: 403 -----------------------------LKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
                                        L+LF  ++    +P   A   A+++ A L +
Sbjct: 506 AFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSS 565

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
           L+ G+++H  L+  G+       ++L+ MYA CG VE +  +F+++   D + W +MI A
Sbjct: 566 LKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINA 625

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
            G HG G +AI L+++M  + ++PD ITFL +L AC+H+GL+ EG+R+FE M   Y + P
Sbjct: 626 NGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEP 685

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
             +HYA  +DLL R+    EA   + ++P KPS+ IW ALL  C IH N +LG  AA++L
Sbjct: 686 WPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKEL 745

Query: 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVD 673
            Q    ++G Y L+SN++A  GRW+D   VR  M+  G+KK PGCSWIEVDNK+H F+  
Sbjct: 746 LQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMAR 805

Query: 674 DTAHPEAQAVYKYLEQLV-LEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGL 732
           D +HP+   +Y  L Q   L  +K GY+  TKFV H++  ++K   L  HSE+LA+ +GL
Sbjct: 806 DKSHPQTDDIYLKLAQFTKLLEKKGGYIAQTKFVFHNVSEEEKTQMLYGHSERLALGYGL 865

Query: 733 MKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +  P G  +R+ KNLRIC DCH  FK  S+V  R +VVRD  RFHHF  G CSCGD+W
Sbjct: 866 LVTPKGTCIRITKNLRICDDCHTFFKIASEVSQRPLVVRDANRFHHFERGLCSCGDFW 923



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 138/503 (27%), Positives = 224/503 (44%), Gaps = 79/503 (15%)

Query: 50  EHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVA--RTTLIAAYSASDNVKLAREMFNKT 107
           EH  + L+D+   +  L   + L   + +  + A   T L+  Y    +++ A ++F++ 
Sbjct: 46  EHAHSLLLDLCVAAKALPQGQQLHALLLKSHLSAFLATKLVLMYGKCGSLRDAVKVFDE- 104

Query: 108 PLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEK 167
            +  R    +NA++ A+  +     AIEL++DMR   V  D  TF SVL A   +  E +
Sbjct: 105 -MSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGAL-GESR 162

Query: 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDE--MPERDE 225
              ++H   VK G G F  V NALI++Y KC           +G AR +FD   M + D 
Sbjct: 163 LGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGD---------LGGARVLFDGIMMEKEDT 213

Query: 226 LSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTY 285
           +SW ++++ +V       A      M E VGVA N                      +T+
Sbjct: 214 VSWNSIISAHVAEGNCLEALSLFRRMQE-VGVASNT---------------------YTF 251

Query: 286 TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS-LPVNNALVTLYWKCGKVNEARDIF 344
            + +    +    +LG  +H  +L++       F+ + V NAL+ +Y KCG++ +A  +F
Sbjct: 252 VAALQGVEDPSFVKLGMGIHGAVLKSN-----HFADVYVANALIAMYAKCGRMEDAGRVF 306

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
             M  RD VSWN +L                               SGL QN    + L 
Sbjct: 307 ESMLCRDYVSWNTLL-------------------------------SGLVQNELYSDALN 335

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
            F  M+  G KP   +    I +    G L  G+++HA  + +G DS++  GN L+ MYA
Sbjct: 336 YFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYA 395

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           +C  V+     F  M   D +SW  +IA   Q+     AI L+ ++  +G+  D +   +
Sbjct: 396 KCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGS 455

Query: 525 VLSACNHAGLVKEGRRYFETMHG 547
           VL AC  +GL  + R +   +HG
Sbjct: 456 VLRAC--SGL--KSRNFIREIHG 474



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 135/323 (41%), Gaps = 53/323 (16%)

Query: 282 EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEAR 341
           E  ++ ++  C  +     G+Q+HA LL++        S  +   LV +Y KCG + +A 
Sbjct: 46  EHAHSLLLDLCVAAKALPQGQQLHALLLKSH------LSAFLATKLVLMYGKCGSLRDAV 99

Query: 342 DIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEE 401
            +F++M                                ER + SW  ++     +G   E
Sbjct: 100 KVFDEMS-------------------------------ERTIFSWNALMGAFVSSGKYLE 128

Query: 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALIT 461
            ++L+  MR+ G       F   + +C  LG    G ++H   V  GY   +   NALI 
Sbjct: 129 AIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIA 188

Query: 462 MYARCGVVEAANCVFN--TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           MY +CG +  A  +F+   M   D+VSWN++I+A    GN   A+ L+ +M + G+  + 
Sbjct: 189 MYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNT 248

Query: 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA------RFIDLLCRAGKFSE 573
            TF+  L        VK G        G +G     +H+A        I +  + G+  +
Sbjct: 249 YTFVAALQGVEDPSFVKLGM-------GIHGAVLKSNHFADVYVANALIAMYAKCGRMED 301

Query: 574 AKDVIDSLPFKPSAPIWEALLAG 596
           A  V +S+  +     W  LL+G
Sbjct: 302 AGRVFESMLCRDYVS-WNTLLSG 323



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 136/320 (42%), Gaps = 54/320 (16%)

Query: 44  SGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREM 103
           SG K R  I  R I  Y      V+ R L       DI+ +  ++  Y    ++  AR  
Sbjct: 461 SGLKSRNFI--REIHGY------VFKRDL------ADIMLQNAIVNVYGEVGHIDYARRA 506

Query: 104 FNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIV 163
           F    ++ +D V + +MIT   HN     A+ELF  +++ +++PD+    S LSA A + 
Sbjct: 507 FES--IRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANL- 563

Query: 164 EEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER 223
              K+  ++H  +++ G  L   + ++L+ +Y  C           +  +R++F  + +R
Sbjct: 564 SSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACC---------GTVENSRKMFHSVKQR 614

Query: 224 DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEF 283
           D + WT+M+                +GM    G    AL         KM    +  D  
Sbjct: 615 DLILWTSMINA--------------NGM-HGCGNKAIALFK-------KMTDQNVIPDHI 652

Query: 284 TYTSVISACANSGLFRLGKQVHAYL-LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARD 342
           T+ +++ AC++SGL   GK+    +    + +P PE        +V L  +   + EA  
Sbjct: 653 TFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHY----ACMVDLLSRSNSLEEAYH 708

Query: 343 IFNQMPERDLVS-WNAILSA 361
               MP +     W A+L A
Sbjct: 709 FVRNMPIKPSSEIWCALLGA 728



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 137/349 (39%), Gaps = 64/349 (18%)

Query: 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALI 460
           + L L S   L      ++A +  +  C    AL  G+QLHA L+ S   + L+    L+
Sbjct: 29  QSLTLLSTHPLATPSRLEHAHSLLLDLCVAAKALPQGQQLHALLLKSHLSAFLA--TKLV 86

Query: 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI 520
            MY +CG +  A  VF+ M      SWNA++ A    G    AIELY+ M   G+  D  
Sbjct: 87  LMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDAC 146

Query: 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA----RFIDLLCRAGKFSEAKD 576
           TF +VL AC   G + E R   E +HG   +  G   +       I +  + G    A+ 
Sbjct: 147 TFPSVLKAC---GALGESRLGAE-IHG-VAVKCGYGEFVFVCNALIAMYGKCGDLGGARV 201

Query: 577 VIDSLPFKPSAPI-WEALLAGCRIHGNI-----------DLGIQAAEQLFQLM------- 617
           + D +  +    + W ++++     GN            ++G+ +    F          
Sbjct: 202 LFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDP 261

Query: 618 ----------------PHHAGTYV--LLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCS 659
                            H A  YV   L  MYA  GR +DA RV + M  R        S
Sbjct: 262 SFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDY-----VS 316

Query: 660 WIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLH 708
           W    N +   LV +  + +A   ++       +M+  G  PD   VL+
Sbjct: 317 W----NTLLSGLVQNELYSDALNYFR-------DMQNSGQKPDQVSVLN 354


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 255/715 (35%), Positives = 384/715 (53%), Gaps = 89/715 (12%)

Query: 86  TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
           +L AAY+    +  A      +P        +NA++ A S   +  AA+ +FR +     
Sbjct: 49  SLAAAYARVGALDAAESTLAASPSSRSCIPAWNALLAARSRAGSPGAALRVFRALP-SSA 107

Query: 146 KPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           +PD+ TFT  L+A A + + +  + +++       G  +F  V +AL+ VY +C      
Sbjct: 108 RPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVF--VCSALLHVYSRC------ 159

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                MG A RVFD MP +D                                VAW+ +++
Sbjct: 160 ---GAMGDAIRVFDGMPRKDH-------------------------------VAWSTMVA 185

Query: 265 GYVH--RELKMLMLRIQL-------DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           G+V   R ++ L +  ++       DE     VI AC  +G  R+G  VH   LR   + 
Sbjct: 186 GFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMR- 244

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
                                              D+V   +++  Y   G  D A+ +F
Sbjct: 245 ----------------------------------MDVVIATSLVDMYAKNGHFDVARQVF 270

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
             M  RN +SW  +ISG AQNG+ +E L LF +M   G +P   A   A+ +CA +G L+
Sbjct: 271 RMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLK 330

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            G+ +H  ++    +     G A++ MY++CG +E+A  +FN + + D V WNAMIA  G
Sbjct: 331 LGKSIHGFILRR-LEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCG 389

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
            HG G  A+ L++++ + GI PD  TF ++LSA +H+GLV+EG+ +F+ M   +GI P E
Sbjct: 390 THGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTE 449

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
            H    +DLL R+G   EA +++ S+  +P+ PIW ALL+GC  +  ++LG   A+++ +
Sbjct: 450 KHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIWVALLSGCLNNKKLELGETIAKKILE 509

Query: 616 LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
             P   G   L+SN+YA   +WD    +RKLM+D G KK PG S IEV    H F+++D 
Sbjct: 510 SQPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVHGTRHAFVMEDQ 569

Query: 676 AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKL 735
           +HP+ Q + K + +L  EMRK+GYVP T+FV HD++ D KE  LS HSE+LA+AFGL+  
Sbjct: 570 SHPQHQEILKMISKLSFEMRKMGYVPRTEFVYHDLDEDVKEQLLSYHSERLAIAFGLLNT 629

Query: 736 PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             G  + ++KNLR+CGDCH+A K++SK+V REIVVRD KRFHHF+DG CSCGDYW
Sbjct: 630 SPGTRLVIIKNLRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 684



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 131/285 (45%), Gaps = 45/285 (15%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+V  T+L+  Y+ + +  +AR++F   P   R+ V +NA+I+ ++ N +   A++LFR+
Sbjct: 246 DVVIATSLVDMYAKNGHFDVARQVFRMMPY--RNAVSWNALISGFAQNGHADEALDLFRE 303

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL-NALISVYVKC 198
           M    ++PD+    S L A A  V   K    +H  +++     F  +L  A++ +Y KC
Sbjct: 304 MSTSGLQPDSGALVSALLACA-DVGFLKLGKSIHGFILRRLE--FQCILGTAVLDMYSKC 360

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
            S         + +AR++F+++  RD + W  M+     +     A      ++E     
Sbjct: 361 GS---------LESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNET---- 407

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE--AKPT 316
                              I+ D  T+ S++SA ++SGL   GK     ++ TE   +PT
Sbjct: 408 ------------------GIKPDHATFASLLSALSHSGLVEEGKFWFDRMI-TEFGIEPT 448

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQM-PERDLVSWNAILS 360
            +  + V    V L  + G V EA ++   M  E  +  W A+LS
Sbjct: 449 EKHCVCV----VDLLARSGLVEEANEMLASMHTEPTIPIWVALLS 489



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 122/273 (44%), Gaps = 25/273 (9%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           T ++  YS   +++ AR++FNK  L  RD V +NAMI     +  GH A+ LF+++    
Sbjct: 351 TAVLDMYSKCGSLESARKLFNK--LSSRDLVLWNAMIACCGTHGCGHDALALFQELNETG 408

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLN--ALISVYVKCVSSP 202
           +KPD+ TF S+LSAL+            H  +V+ G   F  ++    +      CV   
Sbjct: 409 IKPDHATFASLLSALS------------HSGLVEEGKFWFDRMITEFGIEPTEKHCVCVV 456

Query: 203 FVSSRS-LMGAARRVFDEMPERDELS-WTTMMTGYVKNDYLD----AAREFLDGMSENVG 256
            + +RS L+  A  +   M     +  W  +++G + N  L+     A++ L+   E++G
Sbjct: 457 DLLARSGLVEEANEMLASMHTEPTIPIWVALLSGCLNNKKLELGETIAKKILESQPEDIG 516

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
           V   AL+S       K   +R ++ +    S         L  +    HA+++  ++ P 
Sbjct: 517 VL--ALVSNLYAAAKKWDKVR-EIRKLMKDSGSKKVPGYSLIEVHGTRHAFVMEDQSHPQ 573

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
            +  L + + L     K G V     +++ + E
Sbjct: 574 HQEILKMISKLSFEMRKMGYVPRTEFVYHDLDE 606


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 254/730 (34%), Positives = 404/730 (55%), Gaps = 28/730 (3%)

Query: 62  KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMI 121
           K LKL+  RT          V  +  I+  S    +  AR+ F+   L+ +    +N+++
Sbjct: 2   KRLKLILRRTYLTSTG----VNCSFEISRLSRIGKINEARKFFDS--LQFKAIGSWNSIV 55

Query: 122 TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGT 181
           + Y  N     A +LF +M   +V   N   +  +    +IVE       M    V S T
Sbjct: 56  SGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKN-RMIVEARNVFELMPERNVVSWT 114

Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
                   A++  Y++           ++G A  +F  MPER+E+SWT M  G + +  +
Sbjct: 115 --------AMVKGYMQ---------EGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRI 157

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
           D AR+  D M     VA   +I G   RE ++   R+  DE    +V++       +R  
Sbjct: 158 DKARKLYDMMPVKDVVASTNMIGGLC-REGRVDEARLIFDEMRERNVVTWTTMITGYRQN 216

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
            +V   + R   +  PE +     +++  Y   G++ +A + F  MP + +++ NA++  
Sbjct: 217 NRVD--VARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVG 274

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
           +   G I +A+ +F+ M +R+  +W  MI    + G+  E L LF+QM+ +G +P   + 
Sbjct: 275 FGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSL 334

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
              ++ CA L +L+ GRQ+HA LV   +D  +   + L+TMY +CG +  A  VF+   +
Sbjct: 335 ISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSS 394

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY 541
            D + WN++I+    HG G  A++++ +M   G +P+++T + +L+AC++AG ++EG   
Sbjct: 395 KDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEI 454

Query: 542 FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
           FE+M   + + P  +HY+  +D+L RAG+  +A ++I+S+  KP A +W ALL  C+ H 
Sbjct: 455 FESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHS 514

Query: 602 NIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWI 661
            +DL   AA++LF+  P +AGTYVLLS++ A+  +W D A VRK MR   V K PGCSWI
Sbjct: 515 RLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWI 574

Query: 662 EVDNKVHVFLVDDTA-HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALS 720
           EV  KVH+F       HPE   +   LE+    +R+ GY PD   VLHD++ ++K  +LS
Sbjct: 575 EVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLS 634

Query: 721 THSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFR 780
            HSE+LAVA+GL+KLP G  +RV+KNLR+CGDCH A K +SKV  REI++RD  RFHHF 
Sbjct: 635 RHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFN 694

Query: 781 DGKCSCGDYW 790
           +G+CSC DYW
Sbjct: 695 NGECSCRDYW 704



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 107/446 (23%), Positives = 184/446 (41%), Gaps = 114/446 (25%)

Query: 56  LIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTV 115
           +I   C+  ++  AR +FDE+ + ++V  TT+I  Y  ++ V +AR++F   P K    V
Sbjct: 178 MIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTE--V 235

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
            + +M+  Y+ +     A E F  M    +KP       V++  A+IV            
Sbjct: 236 SWTSMLLGYTLSGRIEDAEEFFEVM---PMKP-------VIACNAMIV------------ 273

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
               G G    +                         ARRVFD M +RD  +W  M+  Y
Sbjct: 274 ----GFGEVGEI-----------------------SKARRVFDLMEDRDNATWRGMIKAY 306

Query: 236 VKNDY-LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACAN 294
            +  + L+A   F     + V  ++ +LI                       S++S CA 
Sbjct: 307 ERKGFELEALDLFAQMQKQGVRPSFPSLI-----------------------SILSVCAT 343

Query: 295 SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS 354
               + G+QVHA+L+R +        + V + L+T+Y KCG++ +A+ +F++   +D++ 
Sbjct: 344 LASLQYGRQVHAHLVRCQFDD----DVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIM 399

Query: 355 WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF 414
           WN+I+S Y S GL                               GEE LK+F +M   G 
Sbjct: 400 WNSIISGYASHGL-------------------------------GEEALKIFHEMPSSGT 428

Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY--DSSLSAGNALITMYARCGVVEAA 472
            P        +T+C+  G LE G ++   +  S +    ++   +  + M  R G V+ A
Sbjct: 429 MPNKVTLIAILTACSYAGKLEEGLEIFESM-ESKFCVTPTVEHYSCTVDMLGRAGQVDKA 487

Query: 473 NCVFNTMP-NVDSVSWNAMIAALGQH 497
             +  +M    D+  W A++ A   H
Sbjct: 488 MELIESMTIKPDATVWGALLGACKTH 513



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 76/355 (21%), Positives = 147/355 (41%), Gaps = 69/355 (19%)

Query: 56  LIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKM---- 111
           +I  Y ++ ++  AR LF+ +P+   V+ T+++  Y+ S  ++ A E F   P+K     
Sbjct: 209 MITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIAC 268

Query: 112 -------------------------RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
                                    RD   +  MI AY        A++LF  M++  V+
Sbjct: 269 NAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVR 328

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           P   +  S+LS  A +   +    Q+H  +V+        V + L+++YVKC        
Sbjct: 329 PSFPSLISILSVCATLASLQ-YGRQVHAHLVRCQFDDDVYVASVLMTMYVKC-------- 379

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              +  A+ VFD    +D + W ++++GY  +   + A +    M            SG 
Sbjct: 380 -GELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPS----------SGT 428

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
           +             ++ T  ++++AC+ +G    G ++   +   E+K     ++   + 
Sbjct: 429 MP------------NKVTLIAILTACSYAGKLEEGLEIFESM---ESKFCVTPTVEHYSC 473

Query: 327 LVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSAYVSAGLID----EAKSLFE 376
            V +  + G+V++A ++   M  + D   W A+L A  +   +D     AK LFE
Sbjct: 474 TVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFE 528



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 2/109 (1%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R VHAH++   F    ++ + L+ +Y K  +LV A+ +FD     DI+   ++I+ Y++
Sbjct: 350 GRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYAS 409

Query: 94  SDNVKLAREMFNKTPLK--MRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
               + A ++F++ P    M + V   A++TA S+       +E+F  M
Sbjct: 410 HGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESM 458


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 254/692 (36%), Positives = 386/692 (55%), Gaps = 62/692 (8%)

Query: 113 DTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA---LIVEEEKQC 169
           + + +N M   ++ NS+   A++L+  M    + P++++F  +L + A    ++E +   
Sbjct: 29  NLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAKSKALIEGQ--- 85

Query: 170 MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWT 229
            Q+H  V+K G  L   V  +LIS+Y +            +  A +VFD    R  +S+T
Sbjct: 86  -QIHGHVLKLGYDLDMYVNTSLISMYAQ---------NGRLEDAHKVFDRSSHRHVVSYT 135

Query: 230 TMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR-------EL--KMLMLRIQL 280
            ++TGY    Y++ AR+  D +S    V+WNA+ISGYV         EL   M+   ++ 
Sbjct: 136 ALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKP 195

Query: 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
           DE T  +V+SACA SG   LG+Q+H+++           ++ + N L+ LY KCG+V   
Sbjct: 196 DESTMVTVVSACAQSGSIELGRQLHSWI----EDHGFGSNIKIVNVLIDLYSKCGEV--- 248

Query: 341 RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGE 400
                                       + A  LF+ + +++++SW  +I G       +
Sbjct: 249 ----------------------------ETACGLFQGLAKKDVISWNTLIGGHTHMNLYK 280

Query: 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH--SGYDSSLSAGNA 458
           E L LF +M   G  P D      + +CA LGA++ GR +H  +     G  ++ S   +
Sbjct: 281 EALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTS 340

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           LI MYA+CG +EAA  VF++M      SWNAMI     HG    A +L+ +M K GI PD
Sbjct: 341 LIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPD 400

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVI 578
            ITF+ +LSAC+H+G++  GR  F +M   Y I P  +HY   IDLL   G F EAK++I
Sbjct: 401 DITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMI 460

Query: 579 DSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWD 638
            ++P +P   IW +LL  C++H N++LG   A+ L ++ P + G+YVLLSN+YA  GRWD
Sbjct: 461 RTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWD 520

Query: 639 DAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLG 698
             A++R L+ D+G+KK PGCS IE+D+ VH F++ D  HP  + +Y+ LE++ + M + G
Sbjct: 521 QVAKIRTLLNDKGIKKAPGCSSIEIDSVVHEFIIGDKFHPRNREIYRMLEEMEMLMEETG 580

Query: 699 YVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFK 758
           +VPDT  VL +ME + KE AL  HSEKLA+AFGL+    G  + ++KNLR+C +CH A K
Sbjct: 581 FVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATK 640

Query: 759 FMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            +SK+  REI+ RD  R H  +DG  SC DYW
Sbjct: 641 LISKIYKREIIARDRTRLHLLKDGVWSCHDYW 672



 Score =  185 bits (469), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 113/407 (27%), Positives = 202/407 (49%), Gaps = 34/407 (8%)

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKN-DYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
           A  +F+ + E + L W TM  G+  N D + A + ++                       
Sbjct: 18  AISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYV----------------------- 54

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
            M+ L +  + +++  ++ +CA S     G+Q+H ++L    K   +  + VN +L+++Y
Sbjct: 55  CMISLGLLPNSYSFPFLLKSCAKSKALIEGQQIHGHVL----KLGYDLDMYVNTSLISMY 110

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            + G++ +A  +F++   R +VS+ A+++ Y S G I+ A+ LF+ +  ++++SW  MIS
Sbjct: 111 AQNGRLEDAHKVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMIS 170

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
           G  +    +E L+L+  M     KP +      +++CA  G++E GRQLH+ +   G+ S
Sbjct: 171 GYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGS 230

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
           ++   N LI +Y++CG VE A  +F  +   D +SWN +I           A+ L+++ML
Sbjct: 231 NIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEML 290

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY-GIPPGEDHYARFIDLLCRAGK 570
           + G  P+ +T L+VL AC H G +  GR     ++    G+          ID+  + G 
Sbjct: 291 RSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGD 350

Query: 571 FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
              AK V DS+    S   W A++ G  +HG  +    AA  LF  M
Sbjct: 351 IEAAKQVFDSM-LTRSLSSWNAMIFGFAMHGKAN----AAFDLFSKM 392



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/468 (26%), Positives = 205/468 (43%), Gaps = 69/468 (14%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +H H++  G+    ++   LI +Y ++ +L  A  +FD      +V+ T LI  Y++
Sbjct: 84  GQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGYAS 143

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
              +  AR++F++  +K  D V +NAMI+ Y    N   A+EL++DM + +VKPD  T  
Sbjct: 144 RGYINNARKLFDEISVK--DVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMV 201

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           +V+SA A     E    Q+H  +   G G    ++N LI +Y KC           +  A
Sbjct: 202 TVVSACAQSGSIELG-RQLHSWIEDHGFGSNIKIVNVLIDLYSKC---------GEVETA 251

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
             +F  + ++D +SW T++ G+   +    A      M          L SG    ++ M
Sbjct: 252 CGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEM----------LRSGESPNDVTM 301

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
           L            SV+ ACA+ G   +G+ +H Y+ +     T   SL    +L+ +Y K
Sbjct: 302 L------------SVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLT--SLIDMYAK 347

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
           CG +  A+ +F+ M  R L SWNA++  +                               
Sbjct: 348 CGDIEAAKQVFDSMLTRSLSSWNAMIFGF------------------------------- 376

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSS 452
           A +G       LFS+MR  G  P D  F G +++C+  G L+ GR +   +         
Sbjct: 377 AMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPK 436

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
           L     +I +   CG+ + A  +  TMP   D V W +++ A   H N
Sbjct: 437 LEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNN 484


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 270/785 (34%), Positives = 417/785 (53%), Gaps = 65/785 (8%)

Query: 52  IINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKM 111
           +INR+  ++   L   +A+ + + +   D+V  T L    S    +  A  +F+  P   
Sbjct: 16  LINRVSTLH--QLNQTHAQIILNGL-HNDLVTVTKLTHKLSHLKAIDQASLLFSTIP--N 70

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD-VKPDNFTFTSVLSALALIVEEEKQCM 170
            D   YN +I A+S N++  +A+ L+  +R+   ++PDNFT+  V+S  + +        
Sbjct: 71  PDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLL-- 128

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
             H  V   G+ LF  V +A+++ Y K          S + AAR+VFD M ERD + W T
Sbjct: 129 HAHSIVAGFGSDLF--VGSAIVACYFKF---------SRVAAARKVFDGMLERDTVLWNT 177

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWN-----ALISGYVHRE-------LKMLMLRI 278
           M++G VKN   D A      M +  G+ ++     A++ G    +       ++ L +++
Sbjct: 178 MVSGLVKNSCFDEAILIFGDMVKG-GIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKV 236

Query: 279 QLDEFTYTSVISACANS------------------GLFRLGKQVHAYLLRTEAKPTPEF- 319
                 Y     AC  S                   L      +  Y    E + +    
Sbjct: 237 GFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLF 296

Query: 320 ------SLPVNNA----LVTLYWKCGKVNEARDIF----NQMPERDLVSWNAILSAYVSA 365
                    VN++    L+ +++  G ++  R I           +     A+ + Y   
Sbjct: 297 KELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRL 356

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425
             I+ A+ LF+   E++L SW  MISG AQNG  E+ + LF +M+    +P        +
Sbjct: 357 NEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSIL 416

Query: 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV 485
           ++CA LGAL  G+ +H  +    ++S++    ALI MYA+CG +  A  +F+ MP  ++V
Sbjct: 417 SACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAV 476

Query: 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETM 545
           +WNAMI+  G HG G  A+ L+ +ML   + P  +TFL+VL AC+HAGLV+EG   F +M
Sbjct: 477 TWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSM 536

Query: 546 HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDL 605
              +G  P  +HYA  +DLL RAG   +A D I  +P +P  P+W ALL  C IH + +L
Sbjct: 537 VHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANL 596

Query: 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDN 665
              A+++LF+L P + G YVLLSN+Y+    + +AA VR +++ R + K PGC+ IEV N
Sbjct: 597 ARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVAN 656

Query: 666 KVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEK 725
            +H+F   D +HP+A A+Y  LE+L  +MR+ G+  +T   LHD+E ++KE  +  HSEK
Sbjct: 657 TLHIFTSGDQSHPQATAIYAMLEKLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSEK 716

Query: 726 LAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCS 785
           LA+AFGL+    G  +R++KNLR+C DCHNA KF+SK+  R IVVRD  RFHHF+DG CS
Sbjct: 717 LAIAFGLITSEPGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGICS 776

Query: 786 CGDYW 790
           CGDYW
Sbjct: 777 CGDYW 781



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 119/505 (23%), Positives = 208/505 (41%), Gaps = 106/505 (20%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           +L   +    +  GF    ++I  L  +Y K  ++  AR LF +I QPD+V       +Y
Sbjct: 224 ALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLV-------SY 276

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
           +A                          MI+ Y+ N+   +++ LF+++     K ++ +
Sbjct: 277 NA--------------------------MISGYTCNNETESSVRLFKELLVSGEKVNSSS 310

Query: 152 FTSVLSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
              ++            +C+   CT  KSG    +SV  AL +VY         S  + +
Sbjct: 311 IVGLIPVFFPFGHLHLTRCIHGFCT--KSGVVSNSSVSTALTTVY---------SRLNEI 359

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
            +AR +FDE  E+   SW  M++GY +N   + A      M +                 
Sbjct: 360 ESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQK----------------- 402

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
                  ++ +  T TS++SACA  G   LGK VH  + R     + E ++ V+ AL+ +
Sbjct: 403 -----CEVRPNPVTVTSILSACAQLGALSLGKWVHDLINR----ESFESNIFVSTALIDM 453

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y KCG + EA+ +F+ MPE++ V+WNA++S Y   GL                       
Sbjct: 454 YAKCGSITEAQRLFSMMPEKNAVTWNAMISGY---GL----------------------- 487

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GY 449
                +GYG E L LF++M      P    F   + +C+  G +  G ++   +VH  G+
Sbjct: 488 -----HGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGF 542

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYE 508
           +        ++ +  R G ++ A      MP       W A++ A   H +   A    +
Sbjct: 543 EPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASD 602

Query: 509 QMLKEGILPDRITFLTVLSACNHAG 533
           ++ +  + P  + +  +LS    AG
Sbjct: 603 KLFE--LDPQNVGYYVLLSNIYSAG 625



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 72/185 (38%), Gaps = 59/185 (31%)

Query: 19  QLQLCDPR-NPITS-------------SLARSVHAHMISSGFKPREHIINRLIDIYCKSL 64
           ++Q C+ R NP+T              SL + VH  +    F+    +   LID+Y K  
Sbjct: 399 EMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCG 458

Query: 65  KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
            +  A+ LF  +P+                                 ++ V +NAMI+ Y
Sbjct: 459 SITEAQRLFSMMPE---------------------------------KNAVTWNAMISGY 485

Query: 125 SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLF 184
             +  GH A+ LF +M    V P   TF SVL A +            H  +V+ G  +F
Sbjct: 486 GLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACS------------HAGLVREGDEIF 533

Query: 185 TSVLN 189
            S+++
Sbjct: 534 RSMVH 538


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 274/834 (32%), Positives = 421/834 (50%), Gaps = 120/834 (14%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF 73
           N Y S LQLC  +  +     + VH+ +IS+G    E +  +L+ +Y     LV  R +F
Sbjct: 95  NSYCSVLQLCAEKKSLED--GKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIF 152

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTP------------------------- 108
           D+I    +     L++ Y+   N + +  +F K                           
Sbjct: 153 DKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVK 212

Query: 109 ---------LKM---RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
                    LK+    +T   N++I AY       +A  LF ++     +PD  ++ S++
Sbjct: 213 ECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELS----EPDVVSWNSMI 268

Query: 157 SALALIVEEEKQCMQMHCTVVK-SGTGLFTSV----------LNALISVYVKCVSSPFVS 205
           +                C V   SG GL   +          L  L+SV V C +   +S
Sbjct: 269 NG---------------CVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLS 313

Query: 206 -SRSLMG-AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
             R+L G   +  F E    + +   T++  Y K   L+ A E    M +   V+W ++I
Sbjct: 314 LGRALHGFGVKACFSE----EVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSII 369

Query: 264 SGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
           + YV   L         +M    ++ D +T TS++ ACA S     G+ VH+Y+++    
Sbjct: 370 AAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMG 429

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
                +LPV NAL+ +Y KCG                                ++EA+ +
Sbjct: 430 S----NLPVTNALINMYAKCGS-------------------------------VEEARLV 454

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
           F  +  ++++SW  MI G +QN    E L+LF  M+ + FKP D   A  + +CAGL AL
Sbjct: 455 FSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAAL 513

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
           + GR++H  ++  GY S L    AL+ MYA+CG++  A  +F+ +P  D +SW  MIA  
Sbjct: 514 DKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGY 573

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
           G HG G  AI  + +M   GI PD  +F  +L+AC+H+GL+ EG ++F +M    G+ P 
Sbjct: 574 GMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPK 633

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
            +HYA  +DLL R G  S+A   I+S+P KP   IW  LL+GCRIH ++ L  + AE +F
Sbjct: 634 LEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIF 693

Query: 615 QLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDD 674
           +L P +   YV+L+N+YA   +W++  ++RK M+ RG K+ PGCSWIEV  K ++F+  +
Sbjct: 694 ELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGN 753

Query: 675 TAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMK 734
           + HP+A+ +   L +L ++M+   Y    ++VL + +  +KE     HSEK A+AFG++ 
Sbjct: 754 SKHPQAKKIDVLLSKLTMQMQNEDYSSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILN 813

Query: 735 LPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788
           LP G TVRV KN R+CGDCH   KFMSK    EIV+RD  RFHHF+DG CSC D
Sbjct: 814 LPPGRTVRVSKNRRVCGDCHEMGKFMSKTTKMEIVLRDSNRFHHFKDGLCSCRD 867


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 264/721 (36%), Positives = 403/721 (55%), Gaps = 50/721 (6%)

Query: 103 MFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALI 162
           +F  +P    D   Y+ M+  YS     +  + LF+     +++P  F +      + LI
Sbjct: 56  IFTSSPSP--DASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVY------IYLI 107

Query: 163 VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF-------VSSRSLMG---- 211
               K     H  V+K G      + NA++ +Y K             ++ R+L      
Sbjct: 108 KLAGKSGNMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSM 167

Query: 212 -----------AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWN 260
                       A  +F+ MP R+ ++WT+M+TGY K   L++AR + D M E   V+WN
Sbjct: 168 ISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWN 227

Query: 261 ALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
           A+ S Y  +E          +ML   I  D+ T+   IS+C++ G   L   +    LR 
Sbjct: 228 AMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSI----LRM 283

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM-PERDLVSWNAILSAYVSAGLIDE 370
             +     +  V  AL+ ++ K G +  AR+IF+++  +R+ V+WN ++SAY   G +  
Sbjct: 284 IDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSL 343

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RLEGFKPCDYAFAGAITSCA 429
           A+ LF+ M +R+++SW  MI+G AQNG     ++LF +M      +P +   A  +++C 
Sbjct: 344 ARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACG 403

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
            +GAL+    +   +        +S  N+LI MY++CG V  A+ +F TM   D VS+N 
Sbjct: 404 HIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNT 463

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY 549
           +I+    +G+G  AI+L   M +EGI PD +T++ VL+AC+HAGL+ EG+  F+++  P 
Sbjct: 464 LISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQAP- 522

Query: 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609
                 DHYA  +DLL RAG+  EAK +I S+P KP A ++ +LL   RIH  + LG  A
Sbjct: 523 ----TVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELA 578

Query: 610 AEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHV 669
           A +LF+L P + G YVLLSN+YA+ GRW+D  RVR++M+  G+KK  G SW+E   +VH 
Sbjct: 579 ASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHK 638

Query: 670 FLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVA 729
           F V D +H +++ +YK L +L  +M+++G+V D    L D+E ++KE  L THSEKLA+ 
Sbjct: 639 FTVGDRSHEQSKDIYKLLAELERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAIC 698

Query: 730 FGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
           F L+    G T+RV+KNLRIC DCH A K +SK+ GREIVVRD  RFH F +G CSC DY
Sbjct: 699 FALLISEVGTTIRVVKNLRICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDY 758

Query: 790 W 790
           W
Sbjct: 759 W 759



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 120/488 (24%), Positives = 213/488 (43%), Gaps = 99/488 (20%)

Query: 38  HAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE---------------------- 75
           HA+++  G      I N ++D+Y K+ ++  AR LF++                      
Sbjct: 118 HAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNE 177

Query: 76  ---------IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSH 126
                    +P  +I+  T+++  Y+   +++ AR  F++ P   R  V +NAM +AY+ 
Sbjct: 178 TEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMP--ERSVVSWNAMQSAYAQ 235

Query: 127 NSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS 186
                 A+ LF  M  + + PD+ T+   +S+ + I +          T+  S   +   
Sbjct: 236 KECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDP---------TLADSILRMIDQ 286

Query: 187 ---VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEM-PERDELSWTTMMTGYVKNDYLD 242
              VLN+ +   +  + + F +    +  AR +FDE+  +R+ ++W  M++ Y +   L 
Sbjct: 287 KHIVLNSFVKTALLDMHAKFGN----LEIARNIFDELGSQRNAVTWNIMISAYTRVGKLS 342

Query: 243 AAREFLDGMSENVGVAWNALISGYVHR-------ELKMLMLR---IQLDEFTYTSVISAC 292
            ARE  D M +   V+WN++I+GY          EL   M+    IQ DE T  SV+SAC
Sbjct: 343 LARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSAC 402

Query: 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL 352
            + G  +L      ++L    +   +  +   N+L+ +Y KCG V +A  IF  M  RD+
Sbjct: 403 GHIGALKLS----YWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDV 458

Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
           VS+N ++S                               G A NG+G+E +KL   M  E
Sbjct: 459 VSFNTLIS-------------------------------GFAANGHGKEAIKLVLTMEEE 487

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
           G +P    + G +T+C+  G L  G+ +   +     D        ++ +  R G ++ A
Sbjct: 488 GIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQAPTVDHYA----CMVDLLGRAGELDEA 543

Query: 473 NCVFNTMP 480
             +  +MP
Sbjct: 544 KMLIQSMP 551



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 96/228 (42%), Gaps = 22/228 (9%)

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK---------SLFEA 377
           LV L  K   + + R     +    L S N     +VS  LI+  +         S+F +
Sbjct: 4   LVALASKISNIRQLRQFHGHLVHNSLHSHNY----WVSLLLINCTRLHAHPAYVDSIFTS 59

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
               +   ++ M+   ++ G   + + LF        +P  + +   I   AG    ++G
Sbjct: 60  SPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLI-KLAG----KSG 114

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
              HA ++  G+       NA++ MYA+ G V+ A  +F  M       WN+MI+   + 
Sbjct: 115 NMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKS 174

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETM 545
           GN   A+ L+  M    I    IT+ ++++     G ++  RRYF+ M
Sbjct: 175 GNETEAVVLFNMMPARNI----ITWTSMVTGYAKMGDLESARRYFDEM 218


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 253/693 (36%), Positives = 390/693 (56%), Gaps = 69/693 (9%)

Query: 103 MFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALI 162
           +FN+   K  D   +N++I   + + +   A+  F  MR+  + P   +F   + A + +
Sbjct: 31  LFNRYVDKT-DVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSL 89

Query: 163 VE--EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEM 220
            +    KQ  Q    V    + +F S  +ALI +Y  C           +  AR+VFDE+
Sbjct: 90  FDIFSGKQTHQ-QAFVFGYQSDIFVS--SALIVMYSTC---------GKLEDARKVFDEI 137

Query: 221 PERDELSWTTMMTGY-VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQ 279
           P+RD +SWT+M+ GY +  + LDA   F D            L+      +  M      
Sbjct: 138 PKRDIVSWTSMIRGYDLNGNALDAVSLFKD------------LLVDENDDDDAMF----- 180

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK--V 337
           LD     SVISAC+      L + +H++++    K   +  + V N L+  Y K G+  V
Sbjct: 181 LDSMGLVSVISACSRVPAKGLTESIHSFVI----KRGFDRGVSVGNTLLDAYAKGGEGGV 236

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNG 397
             AR IF+Q+ ++D VS+N+I+S Y  +G+ +EA  +F  + +  ++++  +        
Sbjct: 237 AVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAI-------- 288

Query: 398 YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN 457
                                   +  + + +  GAL  G+ +H Q++  G +  +  G 
Sbjct: 289 ----------------------TLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGT 326

Query: 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
           ++I MY +CG VE A   F+ M N +  SW AMIA  G HG+ A+A+EL+  M+  G+ P
Sbjct: 327 SIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRP 386

Query: 518 DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577
           + ITF++VL+AC+HAGL  EG R+F  M G +G+ PG +HY   +DLL RAG   +A D+
Sbjct: 387 NYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDL 446

Query: 578 IDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRW 637
           I  +  KP + IW +LLA CRIH N++L   +  +LF+L   + G Y+LLS++YA+ GRW
Sbjct: 447 IQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRW 506

Query: 638 DDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKL 697
            D  RVR +M++RG+ K PG S +E++ +VHVFL+ D  HP+ + +Y++L +L  ++ + 
Sbjct: 507 KDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEA 566

Query: 698 GYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAF 757
           GYV +T  V HD++ ++KE  L  HSEKLA+AFG+M    G+TV V+KNLR+C DCHN  
Sbjct: 567 GYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVI 626

Query: 758 KFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           K +SK+V RE VVRD KRFHHF+DG CSCGDYW
Sbjct: 627 KLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/438 (24%), Positives = 193/438 (44%), Gaps = 76/438 (17%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           Q DI   + LI  YS    ++ AR++F++ P   RD V + +MI  Y  N N   A+ LF
Sbjct: 108 QSDIFVSSALIVMYSTCGKLEDARKVFDEIP--KRDIVSWTSMIRGYDLNGNALDAVSLF 165

Query: 138 RDMRRDDVKPDNFTFTSVLSALALI-----VEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           +D+  D+   D+  F   +  +++I     V  +     +H  V+K G     SV N L+
Sbjct: 166 KDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLL 225

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
             Y K            +  AR++FD++ ++D +S+ ++M+ Y ++   + A E    + 
Sbjct: 226 DAYAK-------GGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLV 278

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
           +N  V +NA+                     T ++V+ A ++SG  R+GK +H  ++R  
Sbjct: 279 KNKVVTFNAI---------------------TLSTVLLAVSHSGALRIGKCIHDQVIRM- 316

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
                E  + V  +++ +Y KCG+V  AR  F++M  +++ SW A+              
Sbjct: 317 ---GLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAM-------------- 359

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
                            I+G   +G+  + L+LF  M   G +P    F   + +C+  G
Sbjct: 360 -----------------IAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAG 402

Query: 433 A-LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAM 490
             +E  R  +A     G +  L     ++ +  R G ++ A  +   M    DS+ W+++
Sbjct: 403 LHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSL 462

Query: 491 IAALGQHGNGARAIELYE 508
           +AA   H N    +EL E
Sbjct: 463 LAACRIHKN----VELAE 476



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 102/424 (24%), Positives = 196/424 (46%), Gaps = 61/424 (14%)

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
           S ++L  +  R+       +  + TT+   YV    + +    +  ++ + G +  AL++
Sbjct: 5   SKKALFCSVSRLLHTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARS-GDSAEALLA 63

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRL--GKQVH--AYLLRTEAKPTPEFS 320
               R+L +   R      ++   I AC  S LF +  GKQ H  A++   ++       
Sbjct: 64  FSSMRKLSLYPTRS-----SFPCAIKAC--SSLFDIFSGKQTHQQAFVFGYQS------D 110

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           + V++AL+ +Y  CGK+ +AR +F+++P+RD+VSW +++  Y   G   +A SLF+ +  
Sbjct: 111 IFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKDL-- 168

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
                       L      ++ + L S                 I++C+ + A      +
Sbjct: 169 ------------LVDENDDDDAMFLDSM-----------GLVSVISACSRVPAKGLTESI 205

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGV--VEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           H+ ++  G+D  +S GN L+  YA+ G   V  A  +F+ + + D VS+N++++   Q G
Sbjct: 206 HSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSG 265

Query: 499 NGARAIELYEQMLKEGILP-DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
               A E++ +++K  ++  + IT  TVL A +H+G ++ G+     +H        ED 
Sbjct: 266 MSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGK----CIHDQVIRMGLEDD 321

Query: 558 Y---ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
                  ID+ C+ G+   A+   D +  K +   W A++AG  +HG+       A +  
Sbjct: 322 VIVGTSIIDMYCKCGRVETARKAFDRMKNK-NVRSWTAMIAGYGMHGH-------AAKAL 373

Query: 615 QLMP 618
           +L P
Sbjct: 374 ELFP 377



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 139/337 (41%), Gaps = 80/337 (23%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLK--LVYARTLFDEIPQPDIVARTTLIAA 90
           L  S+H+ +I  GF     + N L+D Y K  +  +  AR +FD+I   D V+       
Sbjct: 201 LTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVS------- 253

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
                                     YN++++ Y+ +   + A E+FR +    VK    
Sbjct: 254 --------------------------YNSIMSVYAQSGMSNEAFEVFRRL----VKNKVV 283

Query: 151 TFTSVLSALALIVEEEKQCMQ----MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           TF ++  +  L+       ++    +H  V++ G      V  ++I +Y KC        
Sbjct: 284 TFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKC-------- 335

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              +  AR+ FD M  ++  SWT M+ GY  + +   A E    M ++ GV  N +    
Sbjct: 336 -GRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDS-GVRPNYI---- 389

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG-KQVHAYLLRTEAKPTPEFSLPVNN 325
                            T+ SV++AC+++GL   G +  +A   R   +P  E       
Sbjct: 390 -----------------TFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHY----G 428

Query: 326 ALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
            +V L  + G + +A D+  +M  + D + W+++L+A
Sbjct: 429 CMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAA 465


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 262/775 (33%), Positives = 404/775 (52%), Gaps = 75/775 (9%)

Query: 33   LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
            L   +H  +I  GF    ++   L++ Y +   L  A  +F E+P P             
Sbjct: 692  LGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNP------------- 738

Query: 93   ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                + + +N  I     +      +ELFR M+   +K +  T 
Sbjct: 739  --------------------EALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATI 778

Query: 153  TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
              VL A   +        Q+H  V + G     S+ N LIS+Y         S    +  
Sbjct: 779  VRVLQACGKM-GALNAAKQIHGYVFRFGLDSDVSLCNPLISMY---------SKNGKLEL 828

Query: 213  ARRVFDEMPERDELSWTTMMTGYVKNDYL-DAAREFLDGMSENVG---VAWNALISG-YV 267
            ARRVFD M  R+  SW +M++ Y    +L DA   F +  S ++    V WN L+SG ++
Sbjct: 829  ARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFL 888

Query: 268  H---RELKMLMLRIQLDEF-----TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
            H    E+  ++ R+Q + F     + TSV+ A +  G   +GK+ H Y+LR       + 
Sbjct: 889  HGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGF----DC 944

Query: 320  SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
             + V  +L+ +Y K   +  A+ +F+ M  R++ +WN+++S Y   G+ ++A  L   M 
Sbjct: 945  DVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQME 1004

Query: 380  ER----NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
            +     +L++W  MISG A  G              + F P   +    + +CA L  L+
Sbjct: 1005 KEGIKPDLVTWNGMISGYAMWGCAR-----------KAFMPNSASITCLLRACASLSLLQ 1053

Query: 436  NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
             G+++H   + +G+   +    ALI MY++   ++ A+ VF  + N    SWN MI    
Sbjct: 1054 KGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFA 1113

Query: 496  QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
              G G  AI ++ +M K G+ PD ITF  +LSAC ++GL+ EG +YF++M   Y I P  
Sbjct: 1114 IFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRL 1173

Query: 556  DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
            +HY   +DLL RAG   EA D+I ++P KP A IW ALL  CRIH N+     AA+ LF+
Sbjct: 1174 EHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFK 1233

Query: 616  LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
            L P+++  Y+L+ N+Y+   RW+D   +R+LM   GV+     SWI+++ +VHVF  D+ 
Sbjct: 1234 LEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEK 1293

Query: 676  AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKL 735
             HP+A  +Y  L QLV EM+KLGYVPD   V  +M+  +K+  L +H+EKLA+ +GL+K+
Sbjct: 1294 PHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKM 1353

Query: 736  PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
              G  +RV+KN RIC DCH+A K++S V  RE+ +RDG RFHHFR+GKCSC D+W
Sbjct: 1354 KAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 1408



 Score =  170 bits (430), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 114/462 (24%), Positives = 217/462 (46%), Gaps = 47/462 (10%)

Query: 75   EIPQ---PDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNG- 130
            ++PQ   PD  A+  + +     D    A   +   P   R+ + +N+ +  +  ++   
Sbjct: 599  KLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLP---RNYLKWNSFVEEFKSSAGSL 655

Query: 131  HAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNA 190
            H  +E+F+++    V  D+  ++  L     +++     M++H  ++K G  L   +  A
Sbjct: 656  HIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIW-LGMEIHGCLIKRGFDLDVYLRCA 714

Query: 191  LISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDG 250
            L++ Y +C           +  A +VF EMP  + L W   +   ++++ L    E    
Sbjct: 715  LMNFYGRCWG---------LEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFR- 764

Query: 251  MSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
                                 KM    ++ +  T   V+ AC   G     KQ+H Y+ R
Sbjct: 765  ---------------------KMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFR 803

Query: 311  TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
                   +  + + N L+++Y K GK+  AR +F+ M  R+  SWN+++S+Y + G +++
Sbjct: 804  FGL----DSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLND 859

Query: 371  AKSLFEAMRERNL----LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
            A SLF  +   ++    ++W  ++SG   +GY EE L +  +M+ EGFKP   +    + 
Sbjct: 860  AWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQ 919

Query: 427  SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
            + + LG L  G++ H  ++ +G+D  +  G +LI MY +   + +A  VF+ M N +  +
Sbjct: 920  AISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFA 979

Query: 487  WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
            WN++++     G    A+ L  QM KEGI PD +T+  ++S 
Sbjct: 980  WNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISG 1021



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 113/496 (22%), Positives = 213/496 (42%), Gaps = 73/496 (14%)

Query: 20   LQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQP 79
            LQ C     + +  A+ +H ++   G      + N LI +Y K+ KL  AR +FD +   
Sbjct: 782  LQACGKMGALNA--AKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENR 839

Query: 80   DIVARTTLIAAYSASDNVKLAREMF---NKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
            +  +  ++I++Y+A   +  A  +F     + +K  D V +N +++ +  +      + +
Sbjct: 840  NTSSWNSMISSYAALGFLNDAWSLFYELESSDMK-PDIVTWNCLLSGHFLHGYKEEVLNI 898

Query: 137  FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQM----HCTVVKSGTGLFTSVLNALI 192
             + M+ +  KP++ + TSVL A++     E   + M    H  V+++G      V  +LI
Sbjct: 899  LQRMQGEGFKPNSSSMTSVLQAIS-----ELGFLNMGKETHGYVLRNGFDCDVYVGTSLI 953

Query: 193  SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
             +YVK  S         + +A+ VFD M  R+  +W ++++GY      + A   L+ M 
Sbjct: 954  DMYVKNHS---------LXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQM- 1003

Query: 253  ENVG-----VAWNALISGYVHR--ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
            E  G     V WN +ISGY       K  M     +  + T ++ ACA+  L + GK++H
Sbjct: 1004 EKEGIKPDLVTWNGMISGYAMWGCARKAFM----PNSASITCLLRACASLSLLQKGKEIH 1059

Query: 306  AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365
               +R          + V  AL+ +Y K   +  A  +F ++  + L SWN ++  +   
Sbjct: 1060 CLSIRNGFIE----DVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIF 1115

Query: 366  GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425
            GL                               G+E + +F++M+  G  P    F   +
Sbjct: 1116 GL-------------------------------GKEAISVFNEMQKVGVGPDAITFTALL 1144

Query: 426  TSCAGLGALENG-RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVD 483
            ++C   G +  G +   + +        L     ++ +  R G ++ A  + +TMP   D
Sbjct: 1145 SACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPD 1204

Query: 484  SVSWNAMIAALGQHGN 499
            +  W A++ +   H N
Sbjct: 1205 ATIWGALLGSCRIHKN 1220



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 117/260 (45%), Gaps = 19/260 (7%)

Query: 346 QMPERDLVSWNA------ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN-GY 398
           ++P++    WN       ++S+Y+  G    A  +F     RN L W   +     + G 
Sbjct: 599 KLPQK----WNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGS 654

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
               L++F ++  +G       ++ A+ +C  +  +  G ++H  L+  G+D  +    A
Sbjct: 655 LHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCA 714

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           L+  Y RC  +E AN VF+ MPN +++ WN  I    Q     + +EL+ +M    +  +
Sbjct: 715 LMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAE 774

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAK 575
             T + VL AC   G +   ++    +HG    +G+          I +  + GK   A+
Sbjct: 775 TATIVRVLQACGKMGALNAAKQ----IHGYVFRFGLDSDVSLCNPLISMYSKNGKLELAR 830

Query: 576 DVIDSLPFKPSAPIWEALLA 595
            V DS+  + ++  W ++++
Sbjct: 831 RVFDSMENRNTSS-WNSMIS 849


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 273/765 (35%), Positives = 412/765 (53%), Gaps = 111/765 (14%)

Query: 34   ARSVHAHMISSGFKPREHII-NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
             R VHAH+I +G    +  I N L+++Y KS  +  A ++F+ + +              
Sbjct: 878  GREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVE-------------- 923

Query: 93   ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                               +D+V +N++I+    N     A E F  MRR    P NFT 
Sbjct: 924  -------------------KDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTL 964

Query: 153  TSVLS---ALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
             S LS   +L  I+  E    Q+HC  +K G     SV NAL+++Y +            
Sbjct: 965  ISTLSSCASLGWIMLGE----QIHCDGLKLGLDTDVSVSNALLALYAE---------TGC 1011

Query: 210  MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
                 +VF  MPE D++SW +++     ++                     A +S  V  
Sbjct: 1012 FTECLKVFSLMPEYDQVSWNSVIGALSDSE---------------------ASVSQAVKY 1050

Query: 270  ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
             L+M+     L   T+ +++SA ++  L  +  Q+HA +L    K        + NAL++
Sbjct: 1051 FLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVL----KYCLSDDTAIGNALLS 1106

Query: 330  LYWKCGKVNEARDIFNQMPE-RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV 388
             Y KCG++NE   IF +M E RD VSWN+++S Y+   L+ +A  L           W +
Sbjct: 1107 CYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLV----------WFM 1156

Query: 389  MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG 448
            M  G                 RL+ F      FA  +++CA +  LE G ++HA  + + 
Sbjct: 1157 MQKG----------------QRLDSF-----TFATVLSACASVATLERGMEVHACGIRAC 1195

Query: 449  YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
             +S +  G+AL+ MY++CG ++ A+  F  MP  +  SWN+MI+   +HG+G +A++L+ 
Sbjct: 1196 MESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFT 1255

Query: 509  QMLKEGILPDRIT-FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR 567
            +M+ +G  PD +   L VLSAC+H G V+EG  +F++M   Y + P  +H++  +DLL R
Sbjct: 1256 RMMLDGQPPDHVAPLLGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGR 1315

Query: 568  AGKFSEAKDVIDSLPFKPSAPIWEALL-AGCRIHG-NIDLGIQAAEQLFQLMPHHAGTYV 625
            AGK  E  D I+S+P KP+  IW  +L A CR +G N +LG +AAE L +L P +A  YV
Sbjct: 1316 AGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYV 1375

Query: 626  LLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYK 685
            LL+NMYA+  +W+D A+ R  M++  VKKE GCSW+ + + VHVF+  D  HPE   +Y 
Sbjct: 1376 LLANMYASGEKWEDVAKARXAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDXIYD 1435

Query: 686  YLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLK 745
             L +L  +MR  GY+P TK+ L D+E + KE  LS HSEK+AVAF L +      +R++K
Sbjct: 1436 KLRELNRKMRDAGYIPQTKYALFDLELENKEELLSYHSEKIAVAFVLTR-QSALPIRIMK 1494

Query: 746  NLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            NLR+CGDCH+AF ++SK+VGR+IV+RD  RFHHF DGKCSCGDYW
Sbjct: 1495 NLRVCGDCHSAFGYISKIVGRQIVLRDSNRFHHFEDGKCSCGDYW 1539



 Score =  159 bits (403), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 154/597 (25%), Positives = 250/597 (41%), Gaps = 129/597 (21%)

Query: 2    MMKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYC 61
            +  +++   +L NRY  Q   C       S  AR +H   I  GF     + N LI+IY 
Sbjct: 540  LFSSSETFESLINRY--QGSCC-------SEEARELHLQSIKYGFVGNLFLSNTLINIYV 590

Query: 62   KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMI 121
            +   L  A+ LFDE+                                   R+ V +  +I
Sbjct: 591  RIGDLGSAQKLFDEMSN---------------------------------RNLVTWACLI 617

Query: 122  TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEE-----KQCMQMHCTV 176
            + Y+ N     A   FRDM R    P+++ F S L A     +E      K  +Q+H  +
Sbjct: 618  SGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRA----CQESGPSGCKLGVQIHGLI 673

Query: 177  VKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV 236
             K+  G    V N LIS+Y  C+ S           AR VFD +  R+ +SW ++++ Y 
Sbjct: 674  SKTRYGSDVVVCNVLISMYGSCLDSA--------NDARSVFDRIGIRNSISWNSIISVYS 725

Query: 237  K-NDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
            +  D + A   F     E +G ++                     +E+T+ S+I+A  +S
Sbjct: 726  RRGDXVSAYDLFSSMQKEGLGFSFKP-------------------NEYTFGSLITAACSS 766

Query: 296  GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
                                  +F L V   ++    K G +            +DL   
Sbjct: 767  ---------------------VDFGLCVLEQMLARVEKSGFL------------QDLYVG 793

Query: 356  NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR-LEGF 414
            +A++S +   GL D+AK++FE M  RN++S   ++ GL +   GE   K+F +M+ L G 
Sbjct: 794  SALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGI 853

Query: 415  KPCDYAFAGAITSCAGLGALE----NGRQLHAQLVHSGY-DSSLSAGNALITMYARCGVV 469
                Y     +++ +    LE     GR++HA ++ +G  D+ ++ GN L+ MYA+ G +
Sbjct: 854  NSDSYVVL--LSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAI 911

Query: 470  EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
              A  VF  M   DSVSWN++I+ L Q+     A E + +M + G +P   T ++ LS+C
Sbjct: 912  ADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSC 971

Query: 530  NHAGLVKEGRRYFETMHGPYGIPPGEDHYAR----FIDLLCRAGKFSEAKDVIDSLP 582
               G +  G    E +H   G+  G D         + L    G F+E   V   +P
Sbjct: 972  ASLGWIMLG----EQIHCD-GLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMP 1023



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 141/587 (24%), Positives = 255/587 (43%), Gaps = 93/587 (15%)

Query: 33   LARSVHAHMISSGFKPREHIINRLIDIYCKS-------LKLVYARTLFDEIPQPDIVART 85
            L  S+    +   FKP E+    LI   C S       L+ + AR       Q D+   +
Sbjct: 736  LFSSMQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLARVEKSGFLQ-DLYVGS 794

Query: 86   TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
             L++ ++       A+ +F +  + +R+ V  N ++        G AA ++F +M +D V
Sbjct: 795  ALVSGFARFGLTDDAKNIFEQ--MGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEM-KDLV 851

Query: 146  KPDNFTFTSVLSA---LALIVEEEKQCMQMHCTVVKSG-TGLFTSVLNALISVYVKCVSS 201
              ++ ++  +LSA    +++ E  ++  ++H  V+++G      ++ N L+++Y K    
Sbjct: 852  GINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAK---- 907

Query: 202  PFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND-YLDAAREFLDGMSENVGVAWN 260
                    +  A  VF+ M E+D +SW ++++G  +N+   DAA  F             
Sbjct: 908  -----SGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESF------------- 949

Query: 261  ALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
                      L+M         FT  S +S+CA+ G   LG+Q+H   L    K   +  
Sbjct: 950  ----------LRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGL----KLGLDTD 995

Query: 321  LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
            + V+NAL+ LY + G   E   +F+ MPE D VSWN+++ A     L D   S+ +A   
Sbjct: 996  VSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGA-----LSDSEASVSQA--- 1047

Query: 381  RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
                                  +K F +M   G+      F   +++ + L   E   Q+
Sbjct: 1048 ----------------------VKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQI 1085

Query: 441  HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV-DSVSWNAMIAALGQHGN 499
            HA ++        + GNAL++ Y +CG +     +F  M    D VSWN+MI+    +  
Sbjct: 1086 HALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNEL 1145

Query: 500  GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH-- 557
              +A++L   M+++G   D  TF TVLSAC     ++ G      +H   GI    +   
Sbjct: 1146 LHKAMDLVWFMMQKGQRLDSFTFATVLSACASVATLERGME----VHAC-GIRACMESDV 1200

Query: 558  --YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
               +  +D+  + G+   A    + +P + +   W ++++G   HG+
Sbjct: 1201 VVGSALVDMYSKCGRIDYASRFFELMPLR-NVYSWNSMISGYARHGH 1246


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 268/782 (34%), Positives = 401/782 (51%), Gaps = 116/782 (14%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIY-CKSLKLVYARTLFD 74
           +A+ LQ C+  + I   L   +HA ++ SG         R++D+Y   +L  +Y R  F 
Sbjct: 163 FAAALQACEDSSFI--KLGMQIHAAILKSG---------RVLDVYVANALVAMYVR--FG 209

Query: 75  EIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAI 134
           ++P+  ++                          L+ +D V +N+M+T +  N     A+
Sbjct: 210 KMPEAAVIFGN-----------------------LEGKDIVTWNSMLTGFIQNGLYSEAL 246

Query: 135 ELFRDMRRDDVKPDNFTFTSVLSA---LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
           E F D++  D+KPD  +  S++ A   L  ++  +    ++H   +K+G      V N L
Sbjct: 247 EFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGK----EIHAYAIKNGFDSNILVGNTL 302

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           I +Y KC           M    R FD M  +D +SWTT   GY +N     A E L   
Sbjct: 303 IDMYAKCCC---------MSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELL--- 350

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGK--QVHAYLL 309
                            R+L+M  + +  D     S++ AC   GL  LGK  ++H Y +
Sbjct: 351 -----------------RQLQMEGMDV--DATMIGSILLAC--RGLNCLGKIKEIHGYTI 389

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLID 369
           R                        G ++            D V  N I+  Y   G+ID
Sbjct: 390 R------------------------GGLS------------DPVLQNTIIDVYGECGIID 413

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
            A  +FE++  ++++SWT MIS    NG   + L++FS M+  G +P        +++  
Sbjct: 414 YAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVC 473

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
            L  L+ G+++H  ++  G+    S  N L+ MYARCG VE A  +F    N + + W A
Sbjct: 474 SLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTA 533

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY 549
           MI+A G HG G  A+EL+ +M  E I+PD ITFL +L AC+H+GLV EG+ + E M   Y
Sbjct: 534 MISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEY 593

Query: 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609
            + P  +HY   +DLL R     EA  ++ S+  +P+  +W ALL  CRIH N ++G  A
Sbjct: 594 QLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEVA 653

Query: 610 AEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHV 669
           AE+L +L   + G YVL+SN++A  GRW D   VR  M+  G+ K PGCSWIEV NK+H 
Sbjct: 654 AEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPGCSWIEVGNKIHA 713

Query: 670 FLVDDTAHPEAQAVYKYLEQLVLEM-RKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAV 728
           FL  D  HPE   +Y+ L Q+  ++ R+ GYV  TKFVLH++  ++K   L  HSE+LA+
Sbjct: 714 FLSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVLHNVGEEEKVQMLYGHSERLAI 773

Query: 729 AFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788
           A+GL+    G  +RV KNLR+CGDCH+    +S+   RE++VRD  RFHHF+DG CSCGD
Sbjct: 774 AYGLLATAEGTPIRVTKNLRVCGDCHSFCTLVSRFFERELIVRDASRFHHFKDGMCSCGD 833

Query: 789 YW 790
           +W
Sbjct: 834 FW 835



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 141/525 (26%), Positives = 235/525 (44%), Gaps = 96/525 (18%)

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
           Y    +V  A  +F+K  +  R    +NAM+  Y  N     A+E++R+MR   V  D++
Sbjct: 2   YGKCGSVLDAEMIFDK--MSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSY 59

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           TF  +L A   IVE+     ++H   +K G   F  V+N+L+++Y KC         + +
Sbjct: 60  TFPVLLKACG-IVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKC---------NDI 109

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
             AR++FD M              YV+ND                 V+WN++IS Y    
Sbjct: 110 NGARKLFDRM--------------YVRNDV----------------VSWNSIISAYSGNG 139

Query: 271 L---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
           +         +ML   +  + +T+ + + AC +S   +LG Q+HA +L    K      +
Sbjct: 140 MCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAIL----KSGRVLDV 195

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
            V NALV +Y + GK+ EA  IF  +  +D+V+WN++L+ ++  GL  EA   F  ++  
Sbjct: 196 YVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNA 255

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
           +L                               KP   +    I +   LG L NG+++H
Sbjct: 256 DL-------------------------------KPDQVSIISIIVASGRLGYLLNGKEIH 284

Query: 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGA 501
           A  + +G+DS++  GN LI MYA+C  +      F+ M + D +SW    A   Q+    
Sbjct: 285 AYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYL 344

Query: 502 RAIELYEQMLKEGILPDRITFLTVLSAC---NHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
           +A+EL  Q+  EG+  D     ++L AC   N  G +KE   Y  T+ G    P  ++  
Sbjct: 345 QALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGY--TIRGGLSDPVLQN-- 400

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNI 603
              ID+    G    A  + +S+  K     W ++++ C +H  +
Sbjct: 401 -TIIDVYGECGIIDYAVRIFESIECKDVVS-WTSMIS-CYVHNGL 442



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 9/138 (6%)

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           MY +CG V  A  +F+ M      +WNAM+     +G    A+E+Y +M   G+  D  T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID----LLCRAGKFSEAKDV 577
           F  +L AC   G+V++     E +HG   I  G D +   ++    L  +    + A+ +
Sbjct: 61  FPVLLKAC---GIVEDLFCGAE-IHG-LAIKYGCDSFVFVVNSLVALYAKCNDINGARKL 115

Query: 578 IDSLPFKPSAPIWEALLA 595
            D +  +     W ++++
Sbjct: 116 FDRMYVRNDVVSWNSIIS 133


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 248/695 (35%), Positives = 391/695 (56%), Gaps = 64/695 (9%)

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDD-VKPDNFTFTS-VLSALALIVEEEKQCM--- 170
            Y+  + + S   +  A+++ F  +  D  +K    TFTS + S  +L     + C+   
Sbjct: 17  LYSFTVRSLSMKISSSASLQEFTSLCNDGRIKQAYDTFTSEIWSDPSLFSHLLQSCIKLG 76

Query: 171 ------QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERD 224
                 Q+H  ++ SG      + N L++ Y K     F SS  L       F  MP R+
Sbjct: 77  SLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKL--GQFKSSLVL-------FSNMPRRN 127

Query: 225 ELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL---------KMLM 275
            +S+  ++ GY++   L++A++  D MSE     WNA+I+G    E          +M  
Sbjct: 128 VMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYG 187

Query: 276 LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG 335
           L    DEFT  SV+  CA       G++VHA LL                       KCG
Sbjct: 188 LGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLL-----------------------KCG 224

Query: 336 KVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQ 395
                        E   V  +++   Y+ +G + + + L ++M  R +++W  +I+G AQ
Sbjct: 225 ------------FELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQ 272

Query: 396 NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSA 455
           NG  EE L  ++ M++ GF+P    F   +++C+ L  L  G+Q+HA+++ +G  S L+ 
Sbjct: 273 NGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAV 332

Query: 456 GNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI 515
            ++LI+MY+R G +E +   F    N D V W++MIAA G HG G  A+EL+ QM    +
Sbjct: 333 VSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKM 392

Query: 516 LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAK 575
             + +TFL++L AC+H+GL ++G  YF+ M   Y + P  +HY   +DLL RAG+  EA+
Sbjct: 393 EANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAE 452

Query: 576 DVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLG 635
            +I S+P +P   IW+ LLA C++H   ++  + +E++ +L P  A +YVLLSN++A+  
Sbjct: 453 GMIRSMPVQPDGIIWKTLLAACKLHKEAEMAERISEEIIKLDPLDAASYVLLSNIHASAR 512

Query: 636 RWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMR 695
            W + +++RK MRDR V+KEPG SW+E+ N VH F + D +HP+   +  YL++L+ E++
Sbjct: 513 NWLNVSQIRKAMRDRSVRKEPGISWLELKNLVHQFSMGDKSHPQYFEIDLYLKELMSELK 572

Query: 696 KLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHN 755
           + GYVP+   VLHDM++++KEY L+ HSEK A+AF LM       +RV+KNLR+C DCHN
Sbjct: 573 QHGYVPELGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIRVMKNLRVCDDCHN 632

Query: 756 AFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           A K +S++  REI+VRD  RFHHF+DG+CSCG+YW
Sbjct: 633 AIKCISRIRNREIIVRDASRFHHFKDGECSCGNYW 667



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 111/485 (22%), Positives = 208/485 (42%), Gaps = 79/485 (16%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + VH+ +I+SG    + I N L++ Y K  +   +  LF  +P+ ++++   LI  Y  
Sbjct: 81  GKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSNMPRRNVMSFNILINGYLQ 140

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
             +++ A+++F++  +  R+   +NAMI   +       A+ LF++M      PD FT  
Sbjct: 141 LGDLESAQKLFDE--MSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLG 198

Query: 154 SVLSALA----LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           SVL   A    L+  +E     +H  ++K G  L + V ++L  +Y+K  S         
Sbjct: 199 SVLRGCAGLRSLLAGQE-----VHACLLKCGFELSSVVGSSLAHMYIKSGS--------- 244

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +    ++   MP R  ++W T++ G  +N           G  E V   +N         
Sbjct: 245 LSDGEKLIKSMPIRTVVAWNTLIAGKAQN-----------GCPEEVLNQYNM-------- 285

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
              M M   + D+ T+ SV+SAC+       G+Q+HA +++  A       L V ++L++
Sbjct: 286 ---MKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSV----LAVVSSLIS 338

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           +Y + G + ++   F      D+V W+++++AY                           
Sbjct: 339 MYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAY--------------------------- 371

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-G 448
                 +G GEE L+LF QM     +  +  F   + +C+  G  E G +    +V    
Sbjct: 372 ----GFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYK 427

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELY 507
               +     ++ +  R G +E A  +  +MP   D + W  ++AA   H     A  + 
Sbjct: 428 LKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAERIS 487

Query: 508 EQMLK 512
           E+++K
Sbjct: 488 EEIIK 492


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 258/790 (32%), Positives = 401/790 (50%), Gaps = 135/790 (17%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           + L   Y+   ++K A  +F++  +K+   +F+N ++   + + +   +I LF+ M    
Sbjct: 133 SKLALMYTNCGDLKEASRVFDQ--VKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSG 190

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           V+ D++TF+                                            CVS  F 
Sbjct: 191 VEMDSYTFS--------------------------------------------CVSKSFS 206

Query: 205 SSRSLMGAARR----VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWN 260
           S RS+ G  +     +     ER+ +   +++  Y+KN  +D+AR+  D M+E   ++WN
Sbjct: 207 SLRSVNGGEQLHGYILKSGFGERNSVG-NSLVAFYLKNHRVDSARKVFDEMTERDVISWN 265

Query: 261 ALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
           ++I+GYV   L         +ML   I++D  T  SV + CA+S L  LG+ VH + ++ 
Sbjct: 266 SIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKA 325

Query: 312 EAKPTPEFSLPVNNALVTLYWKC-------------------------------GKVNEA 340
                  F     N L+ +Y KC                               G   EA
Sbjct: 326 CFSREDRFC----NTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEA 381

Query: 341 RDIFNQMPER---------------------------------------DLVSWNAILSA 361
             +F +M E                                        D+   NA++  
Sbjct: 382 VKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDM 441

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG-FKPCDYA 420
           Y   G + EA+ +F  MR ++++SW  +I G ++N Y  E L LF+ + +E  F P +  
Sbjct: 442 YAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERT 501

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
            A  + +CA L A + GR++H  ++ +GY S     N+L+ MYA+CG +  A  +F+ + 
Sbjct: 502 VACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDIT 561

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
           + D VSW  MIA  G HG G  AI L+ QM + GI PD I+F+++L AC+H+GLV EG R
Sbjct: 562 SKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWR 621

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
           +F  M     I P  +HYA  +D+L R G  S+A   I+++P  P A IW ALL GCRIH
Sbjct: 622 FFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIH 681

Query: 601 GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSW 660
            ++ L  + AE++F+L P + G YVL++N+YA   +W++  R+RK +  RG++K PGCSW
Sbjct: 682 HDVKLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSW 741

Query: 661 IEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALS 720
           IE+  +V++F+  D+++PE + +  +L  +   M + GY P TK+ L D E  +KE AL 
Sbjct: 742 IEIKGRVNIFVAGDSSNPETEKIEAFLRGVRARMIEEGYSPLTKYALIDAEEMEKEEALC 801

Query: 721 THSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFR 780
            HSEKLA+A G++    G  +RV KNLR+CGDCH   KFMSK+  REIV+RD  RFH F+
Sbjct: 802 GHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFK 861

Query: 781 DGKCSCGDYW 790
           DG CSC  +W
Sbjct: 862 DGHCSCRGFW 871



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 174/388 (44%), Gaps = 78/388 (20%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           SL R+VH   + + F   +   N L+D+Y K   L  A+ +F E+               
Sbjct: 313 SLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSG------------- 359

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                               R  V Y +MI  Y+       A++LF +M  + + PD +T
Sbjct: 360 --------------------RSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYT 399

Query: 152 FTSVLSALAL--IVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
            T+VL+  A   +++E K+   +H  + ++  G    V NAL+ +Y KC S         
Sbjct: 400 VTAVLNCCARNRLLDEGKR---VHEWIKENDMGFDIFVSNALMDMYAKCGS--------- 447

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           M  A  VF EM  +D +SW T++ GY KN Y + A    +                    
Sbjct: 448 MREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFN-------------------- 487

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS-LPVNNALV 328
            L ++  R   DE T   V+ ACA+   F  G+++H Y++R        FS   V N+LV
Sbjct: 488 -LLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMR-----NGYFSDRHVANSLV 541

Query: 329 TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL----L 384
            +Y KCG +  AR +F+ +  +DLVSW  +++ Y   G   EA +LF  MR+  +    +
Sbjct: 542 DMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEI 601

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLE 412
           S+  ++   + +G  +EG + F+ MR E
Sbjct: 602 SFVSLLYACSHSGLVDEGWRFFNIMRHE 629



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 38/138 (27%)

Query: 28  PITSSLA-----RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIV 82
           P  +SL+     R +H +++ +G+    H+ N L+D+Y K   L+ AR LFD+I   D+V
Sbjct: 507 PACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLV 566

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR 142
           + T +IA Y                                   +  G  AI LF  MR+
Sbjct: 567 SWTVMIAGYGM---------------------------------HGFGKEAIALFNQMRQ 593

Query: 143 DDVKPDNFTFTSVLSALA 160
             ++PD  +F S+L A +
Sbjct: 594 AGIEPDEISFVSLLYACS 611



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 4/120 (3%)

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
           CA   +L++G+++   +  +G+    + G+ L  MY  CG ++ A+ VF+ +    ++ W
Sbjct: 104 CADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFW 163

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
           N ++  L + G+ + +I L+++M+  G+  D  TF  V  + +    V  G    E +HG
Sbjct: 164 NILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGG----EQLHG 219


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 249/720 (34%), Positives = 379/720 (52%), Gaps = 87/720 (12%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D +   +L+  Y    +++ A ++FN       + V +N M+ AY   S+   + E+F  
Sbjct: 279 DYITEGSLLDLYVKCGDIETAHDIFNLG--DRTNVVLWNLMLVAYGQISDLAKSFEIFGQ 336

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M+   + P+ FT+  +L       + E    Q+H   +K+G   F S       +YV  V
Sbjct: 337 MQATGIHPNQFTYPCILRTCTCTGQIELG-EQIHSLSIKNG---FES------DMYVSGV 386

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                                          ++  Y K   LD AR+ L+ + +   V+W
Sbjct: 387 -------------------------------LIDMYSKYGCLDKARKILEMLEKRDVVSW 415

Query: 260 NALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
            ++I+GYV  +          +M    +  D     S  SACA     R G Q+HA    
Sbjct: 416 TSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHA---- 471

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
                                           ++      D+  WN +++ Y   G  +E
Sbjct: 472 -------------------------------RVYVSGYAADISIWNTLVNLYARCGRSEE 500

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
           A SLF  +  ++ ++W  +ISG  Q+   ++ L +F +M   G K   + F  AI++ A 
Sbjct: 501 AFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALAN 560

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
           L  ++ G+Q+H + V +G+ S     NALI++Y +CG +E A  +F+ M   + VSWN +
Sbjct: 561 LADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTI 620

Query: 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
           I +  QHG G  A++L++QM +EG+ P+ +TF+ VL+AC+H GLV+EG  YF++M   YG
Sbjct: 621 ITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYG 680

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
           + P  DHYA  +D+L RAG+   A+  +D +P   +A IW  LL+ C++H NI++G  AA
Sbjct: 681 LNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAA 740

Query: 611 EQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVF 670
           + L +L PH + +YVLLSN YA  G+W +  +VRK+M+DRG++KEPG SWIEV N VH F
Sbjct: 741 KHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAF 800

Query: 671 LVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAF 730
            V D  HP +  +YK+L +L   + K+GY  +   + H+ E +QK+     HSEKLAVAF
Sbjct: 801 FVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAF 860

Query: 731 GLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           GLM LP    +RV+KNLR+C DCH+  K  S+V  REIV+RD  RFHHF  G CSCGDYW
Sbjct: 861 GLMTLPPCIPLRVIKNLRVCDDCHSWMKCTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  166 bits (421), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 135/510 (26%), Positives = 223/510 (43%), Gaps = 71/510 (13%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           LI  Y+ +  V  AR++F +  L  RD V + AM++ Y+ +  G  A  L+  M    V 
Sbjct: 84  LIDLYAKNGLVWQARQVFKE--LSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVI 141

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           P  +  +SVLSA     +   Q   +H  V K      T V NALI++Y+   S      
Sbjct: 142 PTPYVLSSVLSACTK-GKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKL--- 197

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
                 A RVF +M   D +++ T+++G+ +  + + A +  D M           +SG 
Sbjct: 198 ------AERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQ----------LSG- 240

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                      ++ D  T  S+++ACA+ G  + GKQ+H+YLL    K    F      +
Sbjct: 241 -----------LRPDCVTVASLLAACASVGDLQKGKQLHSYLL----KAGMSFDYITEGS 285

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           L+ LY KCG +  A DIFN     ++V WN +L AY   G I +    FE          
Sbjct: 286 LLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAY---GQISDLAKSFE---------- 332

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
                             +F QM+  G  P  + +   + +C   G +E G Q+H+  + 
Sbjct: 333 ------------------IFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIK 374

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
           +G++S +     LI MY++ G ++ A  +   +   D VSW +MIA   QH     A+  
Sbjct: 375 NGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALAT 434

Query: 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
           +++M   G+ PD I   +  SAC     +++G +    ++   G       +   ++L  
Sbjct: 435 FKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVY-VSGYAADISIWNTLVNLYA 493

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           R G+  EA  +   +  K     W  L++G
Sbjct: 494 RCGRSEEAFSLFREIEHKDEIT-WNGLISG 522



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 140/514 (27%), Positives = 218/514 (42%), Gaps = 118/514 (22%)

Query: 170 MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWT 229
           +++H T V  G G    + N LI +Y K           L+  AR+VF E+  RD +SW 
Sbjct: 63  LEIHATSVVRGLGADRLIGNLLIDLYAK---------NGLVWQARQVFKELSSRDHVSWV 113

Query: 230 TMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVI 289
            M++GY ++     A      M       W A+I                   +  +SV+
Sbjct: 114 AMLSGYAQSGLGKEAFRLYSQMH------WTAVIP----------------TPYVLSSVL 151

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
           SAC    LF  G+ +HA + + +A  +  F   V NAL+ LY   G    A  +F  M  
Sbjct: 152 SACTKGKLFAQGRMIHAQVYK-QAFCSETF---VGNALIALYLGFGSFKLAERVFCDMLF 207

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
            D V++N                                +ISG AQ G+GE  L++F +M
Sbjct: 208 CDRVTFN-------------------------------TLISGHAQCGHGECALQIFDEM 236

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
           +L G +P     A  + +CA +G L+ G+QLH+ L+ +G         +L+ +Y +CG +
Sbjct: 237 QLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDI 296

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           E A+ +FN     + V WN M+ A GQ  + A++ E++ QM   GI P++ T+  +L  C
Sbjct: 297 ETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTC 356

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPG--EDHYAR--FIDLLCRAGKFSEAKDVIDSLPFKP 585
              G ++ G    E +H    I  G   D Y     ID+  + G   +A+ +++ L  K 
Sbjct: 357 TCTGQIELG----EQIH-SLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLE-KR 410

Query: 586 SAPIWEALLAGCRIH--------------------GNIDL--------GIQAAEQLFQLM 617
               W +++AG   H                     NI L        GI+A  Q  Q+ 
Sbjct: 411 DVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQI- 469

Query: 618 PHHAGTYV-----------LLSNMYANLGRWDDA 640
             HA  YV            L N+YA  GR ++A
Sbjct: 470 --HARVYVSGYAADISIWNTLVNLYARCGRSEEA 501


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 260/690 (37%), Positives = 387/690 (56%), Gaps = 58/690 (8%)

Query: 113 DTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE-EEKQCMQ 171
           + + +N M+  Y+ +S+  +A++L+  M    + P+++TF  +L + A     EE Q  Q
Sbjct: 30  NQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKAFEEGQ--Q 87

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H  V+K G      V  +LIS+Y +            +  A +VFD    RD +S+T +
Sbjct: 88  IHGHVLKLGYEPDLYVHTSLISMYAQ---------NGRLEDAHKVFDRSSHRDVVSYTAL 138

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR-------EL--KMLMLRIQLDE 282
           +TGY  +  + +A+E  D +     V+WNA+ISGY          EL  +M+   ++ DE
Sbjct: 139 ITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDE 198

Query: 283 FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARD 342
            T  +V+SACA S    LG+QVH+++           +L + NAL+ LY KCG+      
Sbjct: 199 GTMVTVLSACAQSRSVELGRQVHSWIDDHGFGS----NLKIVNALIDLYSKCGQ------ 248

Query: 343 IFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG 402
                                    ++ A  LFE +  ++++SW  +I G       +E 
Sbjct: 249 -------------------------VETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEA 283

Query: 403 LKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD--SSLSAGNALI 460
           L LF +M   G  P D      + +CA LGA++ GR +H  +     D  ++ S   +LI
Sbjct: 284 LLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLI 343

Query: 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI 520
            MYA+CG +EAA+ VFN+M +    SWNAMI     HG      +L+ +M K GI PD I
Sbjct: 344 DMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDI 403

Query: 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580
           TF+ +LSAC+H+G +  GR  F++M   Y I P  +HY   IDLL  +G F EAK++I +
Sbjct: 404 TFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKT 463

Query: 581 LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA 640
           +P +P   IW +LL  CR HGN++L    A  L ++ P + G+YVLLSN+YA  G WD+ 
Sbjct: 464 MPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEV 523

Query: 641 ARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYV 700
           A+VR L+  +G+KK PGCS IE+D++VH F+V D  HP  + +Y  LE++   + + G+V
Sbjct: 524 AKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHPRNREIYGMLEEMEALLEEAGFV 583

Query: 701 PDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFM 760
           PDT  VL +ME + KE AL  HSEKLA+AFGL+    G  + ++KNLR+C +CH A K +
Sbjct: 584 PDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLV 643

Query: 761 SKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           SK+  REI+ RD  RFHHFRDG CSC D+W
Sbjct: 644 SKIYKREIIARDRTRFHHFRDGVCSCNDFW 673



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 137/483 (28%), Positives = 224/483 (46%), Gaps = 73/483 (15%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +H H++  G++P  ++   LI +Y ++ +L  A  +FD     D+V+ T LI  Y++
Sbjct: 85  GQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYAS 144

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
           S N++ A+EMF++ P+K  D V +NAMI+ Y+   +   A+ELF++M + +V+PD  T  
Sbjct: 145 SGNIRSAQEMFDEIPVK--DVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMV 202

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           +VLSA A     E    Q+H  +   G G    ++NALI +Y KC           +  A
Sbjct: 203 TVLSACAQSRSVELG-RQVHSWIDDHGFGSNLKIVNALIDLYSKC---------GQVETA 252

Query: 214 RRVFDEMPERDELSWTTMMTGYVK-NDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
             +F+ +  +D +SW T++ GY   N Y +A   F +                       
Sbjct: 253 CGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQE----------------------- 289

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           ML      ++ T  S++ ACA+ G   +G+ +H Y+ +     T   SL    +L+ +Y 
Sbjct: 290 MLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSL--RTSLIDMYA 347

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           KCG +  A  +FN M  + L SWNA                               MI G
Sbjct: 348 KCGDIEAAHQVFNSMLHKSLSSWNA-------------------------------MIFG 376

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
            A +G    G  LFS+MR  G +P D  F G +++C+  G L+ GR +   +    YD +
Sbjct: 377 FAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQD-YDIT 435

Query: 453 --LSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQ 509
             L     +I +    G+ + A  +  TMP   D V W +++ A  +HGN   A      
Sbjct: 436 PKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARN 495

Query: 510 MLK 512
           ++K
Sbjct: 496 LMK 498



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 115/412 (27%), Positives = 208/412 (50%), Gaps = 33/412 (8%)

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY-VKNDYLDAAREFLDGMSENVG 256
           CV SP          A  VF  + E ++L W TM+ GY + +D + A + +         
Sbjct: 7   CVLSPHFDG---FPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLY--------- 54

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
                         + M+ L +  + +T+  ++ +CA S  F  G+Q+H ++L+   +P 
Sbjct: 55  --------------VVMISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEP- 99

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
               L V+ +L+++Y + G++ +A  +F++   RD+VS+ A+++ Y S+G I  A+ +F+
Sbjct: 100 ---DLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFD 156

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
            +  ++++SW  MISG A+ G  +E L+LF +M     +P +      +++CA   ++E 
Sbjct: 157 EIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVEL 216

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           GRQ+H+ +   G+ S+L   NALI +Y++CG VE A  +F  +   D VSWN +I     
Sbjct: 217 GRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTH 276

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY-GIPPGE 555
                 A+ L+++ML+ G  P+ +T +++L AC H G +  GR     +      +    
Sbjct: 277 MNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAP 336

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
                 ID+  + G    A  V +S+  K S   W A++ G  +HG  + G 
Sbjct: 337 SLRTSLIDMYAKCGDIEAAHQVFNSMLHK-SLSSWNAMIFGFAMHGRANAGF 387



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 161/388 (41%), Gaps = 72/388 (18%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R VH+ +   GF     I+N LID+Y K  ++  A  LF+ +   D+V+  TLI  Y+
Sbjct: 216 LGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYT 275

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
              ++ L +E                              A+ LF++M R    P++ T 
Sbjct: 276 ---HMNLYKE------------------------------ALLLFQEMLRSGESPNDVTI 302

Query: 153 TSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
            S+L A A L   +  + + ++            S+  +LI +Y KC           + 
Sbjct: 303 VSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGD---------IE 353

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
           AA +VF+ M  +   SW  M+ G+  +   +A  +    M +N                 
Sbjct: 354 AAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKN----------------- 396

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                 I+ D+ T+  ++SAC++SG   LG+ +   + + +   TP+  L     ++ L 
Sbjct: 397 -----GIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQ-DYDITPK--LEHYGCMIDLL 448

Query: 332 WKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSL---FEAMRERNLLSWT 387
              G   EA+++   MP E D V W ++L A    G ++ A+S       +   N  S+ 
Sbjct: 449 GHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYV 508

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           ++ +  A  G  +E  K+ + +  +G K
Sbjct: 509 LLSNIYATAGEWDEVAKVRALLNGKGMK 536


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 264/721 (36%), Positives = 403/721 (55%), Gaps = 50/721 (6%)

Query: 103 MFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALI 162
           +F  +P    D   Y+ M+  YS     +  + LF+     +++P  F +      + LI
Sbjct: 56  IFTSSPSP--DASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVY------IYLI 107

Query: 163 VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF-------VSSRSLMG---- 211
               K     H  V+K G      + NA++ +Y K             ++ R+L      
Sbjct: 108 KLAGKSGNLFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSM 167

Query: 212 -----------AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWN 260
                       A  +F+ MP R+ ++WT+M+TGY K   L++AR + D M E   V+WN
Sbjct: 168 ISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWN 227

Query: 261 ALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
           A+ S Y  +E          +ML   I  D+ T+   IS+C++ G   L   +    LR 
Sbjct: 228 AMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSI----LRM 283

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM-PERDLVSWNAILSAYVSAGLIDE 370
             +     +  V  AL+ ++ K G +  AR+IF+++  +R+ V+WN ++SAY   G +  
Sbjct: 284 IDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSL 343

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RLEGFKPCDYAFAGAITSCA 429
           A+ LF+ M +R+++SW  MI+G AQNG     ++LF +M      +P +   A  +++C 
Sbjct: 344 ARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACG 403

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
            +GAL+    +   +        +S  N+LI MY++CG V  A+ +F TM   D VS+N 
Sbjct: 404 HIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNT 463

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY 549
           +I+    +G+G  AI+L   M +EGI PD +T++ VL+AC+HAGL+ EG+  F+++  P 
Sbjct: 464 LISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQAP- 522

Query: 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609
                 DHYA  +DLL RAG+  EAK +I S+P KP A ++ +LL   RIH  + LG  A
Sbjct: 523 ----TVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELA 578

Query: 610 AEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHV 669
           A +LF+L P + G YVLLSN+YA+ GRW+D  RVR++M+  G+KK  G SW+E   +VH 
Sbjct: 579 ASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHK 638

Query: 670 FLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVA 729
           F V D +H +++ +YK L +L  +M+++G+V D    L D+E ++KE  L THSEKLA+ 
Sbjct: 639 FTVGDRSHEQSKDIYKLLAELERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAIC 698

Query: 730 FGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
           F L+    G T+RV+KNLRIC DCH A K +SK+ GREIVVRD  RFH F +G CSC DY
Sbjct: 699 FALLISEVGTTIRVVKNLRICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDY 758

Query: 790 W 790
           W
Sbjct: 759 W 759



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 120/488 (24%), Positives = 213/488 (43%), Gaps = 99/488 (20%)

Query: 38  HAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE---------------------- 75
           HA+++  G      I N ++D+Y K+ ++  AR LF++                      
Sbjct: 118 HAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNE 177

Query: 76  ---------IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSH 126
                    +P  +I+  T+++  Y+   +++ AR  F++ P   R  V +NAM +AY+ 
Sbjct: 178 TEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMP--ERSVVSWNAMQSAYAQ 235

Query: 127 NSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS 186
                 A+ LF  M  + + PD+ T+   +S+ + I +          T+  S   +   
Sbjct: 236 KECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDP---------TLADSILRMIDQ 286

Query: 187 ---VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEM-PERDELSWTTMMTGYVKNDYLD 242
              VLN+ +   +  + + F +    +  AR +FDE+  +R+ ++W  M++ Y +   L 
Sbjct: 287 KHIVLNSFVKTALLDMHAKFGN----LEIARNIFDELGSQRNAVTWNIMISAYTRVGKLS 342

Query: 243 AAREFLDGMSENVGVAWNALISGYVHR-------ELKMLMLR---IQLDEFTYTSVISAC 292
            ARE  D M +   V+WN++I+GY          EL   M+    IQ DE T  SV+SAC
Sbjct: 343 LARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSAC 402

Query: 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL 352
            + G  +L      ++L    +   +  +   N+L+ +Y KCG V +A  IF  M  RD+
Sbjct: 403 GHIGALKLS----YWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDV 458

Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
           VS+N ++S                               G A NG+G+E +KL   M  E
Sbjct: 459 VSFNTLIS-------------------------------GFAANGHGKEAIKLVLTMEEE 487

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
           G +P    + G +T+C+  G L  G+ +   +     D        ++ +  R G ++ A
Sbjct: 488 GIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQAPTVDHYA----CMVDLLGRAGELDEA 543

Query: 473 NCVFNTMP 480
             +  +MP
Sbjct: 544 KMLIQSMP 551



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 96/228 (42%), Gaps = 22/228 (9%)

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK---------SLFEA 377
           LV L  K   + + R     +    L S N     +VS  LI+  +         S+F +
Sbjct: 4   LVALASKISNIRQLRQFHGHLVHNSLHSHNY----WVSLLLINCTRLHAHPAYVDSIFTS 59

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
               +   ++ M+   ++ G   + + LF        +P  + +   I   AG    ++G
Sbjct: 60  SPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLI-KLAG----KSG 114

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
              HA ++  G+       NA++ MYA+ G V+ A  +F  M       WN+MI+   + 
Sbjct: 115 NLFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKS 174

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETM 545
           GN   A+ L+  M    I    IT+ ++++     G ++  RRYF+ M
Sbjct: 175 GNETEAVVLFNMMPARNI----ITWTSMVTGYAKMGDLESARRYFDEM 218


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/560 (41%), Positives = 347/560 (61%), Gaps = 38/560 (6%)

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
           AW+  IS Y + +L +L      DE+T+TSV+ ACA       G++VH ++     K   
Sbjct: 105 AWHTTIS-YFNNQL-VLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFV----TKYGC 158

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
           E +L V N+LV LY+K G    A+ +F++M  RD+VSWN ++S Y  +G++D+A+ +F+ 
Sbjct: 159 ESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDG 218

Query: 378 MRERNLLSWTVMISGLAQNGYGEEG-------------------------------LKLF 406
           M E+NL+SW+ MISG A+ G  EE                                ++LF
Sbjct: 219 MMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELF 278

Query: 407 SQMRLEG-FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465
            QM+ EG   P D      +++CA LGAL+ G+ +H  +  +  +  L  GNAL  MYA+
Sbjct: 279 RQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAK 338

Query: 466 CGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTV 525
           CG V  A  VF+ M   D +SW+ +I  L  +G    A   + +M+++G+ P+ I+F+ +
Sbjct: 339 CGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGL 398

Query: 526 LSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP 585
           L+AC HAGLV +G  YF+ M   YGI P  +HY   +DLL RAG+  +A+ +I+S+P +P
Sbjct: 399 LTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQP 458

Query: 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645
           +  +W ALL GCRI+ + + G +   ++ +L  +H+G+ V L+N+YA++GR DDAA  R 
Sbjct: 459 NVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRL 518

Query: 646 LMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKF 705
            MRD    K PGCSWIE++N V+ F + D++HP++  +Y  + +L  +M+  GY P T  
Sbjct: 519 RMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDL 578

Query: 706 VLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVG 765
           V+H+++ ++KE ALSTHSEKLA+AFGL+    G T+R++KNLR+C DCH+A K +SK+V 
Sbjct: 579 VIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVE 638

Query: 766 REIVVRDGKRFHHFRDGKCS 785
           REIVVRD  RFHHF+DGKCS
Sbjct: 639 REIVVRDRSRFHHFKDGKCS 658



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 135/478 (28%), Positives = 224/478 (46%), Gaps = 82/478 (17%)

Query: 67  VYARTLFDEIP--QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
           + A+ +   IP   P+I+A    I   S+  N++ +  +FN   L   +   YNA++ A+
Sbjct: 43  IQAQIIASPIPSIDPNIIA-VKFIGVSSSHGNLRHSVLIFNHF-LSFPNIFAYNALLKAF 100

Query: 125 SHNSNGHAAIELFRD--MRRDDVKPDNFTFTSVLSA---LALIVEEEKQCMQMHCTVVKS 179
           S ++  H  I  F +  +  +   PD +TFTSVL A   LA ++E +K    +HC V K 
Sbjct: 101 SQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQK----VHCFVTKY 156

Query: 180 GTGLFTSVLNALISVYVK----CVSSPF---------VSSRSLMGA---------ARRVF 217
           G      V N+L+ +Y K    C++            VS  +L+           AR VF
Sbjct: 157 GCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVF 216

Query: 218 DEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE--LKMLM 275
           D M E++ +SW+TM++GY +   L+ AR+  + M     V+WNA+I+GY   E     + 
Sbjct: 217 DGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIE 276

Query: 276 LRIQL--------DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327
           L  Q+        ++ T  SV+SACA+ G   LGK +H ++ R +     E  L + NAL
Sbjct: 277 LFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKI----EVGLFLGNAL 332

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWT 387
             +Y KCG V EA+ +F++M ERD++SW+ I                             
Sbjct: 333 ADMYAKCGCVLEAKGVFHEMHERDVISWSII----------------------------- 363

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447
             I GLA  GY  E    F++M  +G +P D +F G +T+C   G ++ G +    +   
Sbjct: 364 --IMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQV 421

Query: 448 -GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARA 503
            G    +     ++ + +R G ++ A  + N+MP   + + W A++     + +  R 
Sbjct: 422 YGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERG 479



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 150/309 (48%), Gaps = 41/309 (13%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
           N LI  YC S  +  AR +FD + + ++V+ +T+I+ Y+   N++ AR++F   P  MR+
Sbjct: 197 NTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMP--MRN 254

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPDNFTFTSVLSALA-LIVEEEKQCMQ 171
            V +NAMI  Y+ N     AIELFR M+ +  + P++ T  SVLSA A L   +  + + 
Sbjct: 255 VVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIH 314

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
                 K   GLF    NAL  +Y KC           +  A+ VF EM ERD +SW+ +
Sbjct: 315 RFIRRNKIEVGLFLG--NALADMYAKC---------GCVLEAKGVFHEMHERDVISWSII 363

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           + G     Y + A  F   M E+                       ++ ++ ++  +++A
Sbjct: 364 IMGLAMYGYANEAFNFFAEMIED----------------------GLEPNDISFMGLLTA 401

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ER 350
           C ++GL   G +    + +     TP+  +     +V L  + G++++A  + N MP + 
Sbjct: 402 CTHAGLVDKGLEYFDMMPQVYG-ITPK--IEHYGCVVDLLSRAGRLDQAESLINSMPMQP 458

Query: 351 DLVSWNAIL 359
           +++ W A+L
Sbjct: 459 NVIVWGALL 467


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 267/725 (36%), Positives = 389/725 (53%), Gaps = 88/725 (12%)

Query: 103 MFNKTPLKMRDTVF-YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALAL 161
           +FN T   +   VF + +M+  YSH  +    + ++  M+   V+PD F +        L
Sbjct: 56  LFNST---LNPNVFVFTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYP------IL 106

Query: 162 IVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM----------- 210
           I       +  H  V+K G G    V NA+I +Y +    P   +R +            
Sbjct: 107 IKSAGTGGIGFHAHVLKLGHGSDAFVRNAVIDMYARL--GPIGHARKVFDEIPDYERKVA 164

Query: 211 ---------------GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
                          G A+ +FD MPER+ ++WT M+TGY K   L+AAR + D M E  
Sbjct: 165 DWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERS 224

Query: 256 GVAWNALISGYVHRELKMLMLR---------IQLDEFTYTSVISACANSGLFRLGKQVHA 306
            V+WNA++SGY    L    LR         I+ DE T+ +VISAC++ G       + A
Sbjct: 225 VVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRG----DPCLAA 280

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366
            L+RT  +   + +  V  AL+ +Y K G                               
Sbjct: 281 SLVRTLHQKRIQLNCFVRTALLDMYAKFGD------------------------------ 310

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RLEGFKPCDYAFAGAI 425
            +D A+ LF  M  RN+++W  MI+G AQNG     ++LF +M   +   P +      I
Sbjct: 311 -LDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVI 369

Query: 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV 485
           ++C  LGALE G  +   L  +    S+S  NA+I MY+RCG +E A  VF  M   D V
Sbjct: 370 SACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVV 429

Query: 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETM 545
           S+N +I+    HG+G  AI L   M + GI PDR+TF+ VL+AC+HAGL++EGR+ FE++
Sbjct: 430 SYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESI 489

Query: 546 HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDL 605
                  P  DHYA  +DLL R G+  +AK  ++ +P +P A ++ +LL   RIH  ++L
Sbjct: 490 K-----DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVEL 544

Query: 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDN 665
           G  AA +LF+L P ++G ++LLSN+YA+ GRW D  R+R+ M+  GVKK  G SW+E   
Sbjct: 545 GELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGG 604

Query: 666 KVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEK 725
           K+H F+V D +H  +  +Y+ L +L  +MR+ GY+ D   VL D+E ++KE  + THSEK
Sbjct: 605 KLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEK 664

Query: 726 LAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCS 785
           LA+ + L+    GA +RV+KNLR+C DCH A K +SK+ GR I+VRD  RFH F DG CS
Sbjct: 665 LAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCS 724

Query: 786 CGDYW 790
           C DYW
Sbjct: 725 CKDYW 729



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 116/486 (23%), Positives = 205/486 (42%), Gaps = 125/486 (25%)

Query: 38  HAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEI--------------------- 76
           HAH++  G      + N +ID+Y +   + +AR +FDEI                     
Sbjct: 118 HAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWE 177

Query: 77  ------------PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
                       P+ +++  T ++  Y+   +++ AR  F+  P   R  V +NAM++ Y
Sbjct: 178 SEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMP--ERSVVSWNAMLSGY 235

Query: 125 SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL----------ALIVEEEKQCMQMHC 174
           + N     A+ LF +M    ++PD  T+ +V+SA           +L+    ++ +Q++C
Sbjct: 236 AQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNC 295

Query: 175 TVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTG 234
                       V  AL+ +Y K            + +AR++F+ MP R+ ++W +M+ G
Sbjct: 296 F-----------VRTALLDMYAKFGD---------LDSARKLFNTMPGRNVVTWNSMIAG 335

Query: 235 YVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACAN 294
           Y +N     A E    M                     +   ++  DE T  SVISAC +
Sbjct: 336 YAQNGQSAMAIELFKEM---------------------ITAKKLTPDEVTMVSVISACGH 374

Query: 295 SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS 354
            G   LG  V  +L   + K     S+  +NA++ +Y +CG + +A+ +F +M  RD+VS
Sbjct: 375 LGALELGNWVVRFLTENQIK----LSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVS 430

Query: 355 WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF 414
           +N ++S                               G A +G+G E + L S M+  G 
Sbjct: 431 YNTLIS-------------------------------GFAAHGHGVEAINLMSTMKEGGI 459

Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
           +P    F G +T+C+  G LE GR++   +     D ++     ++ +  R G +E A  
Sbjct: 460 EPDRVTFIGVLTACSHAGLLEEGRKVFESI----KDPAIDHYACMVDLLGRVGELEDAKR 515

Query: 475 VFNTMP 480
               MP
Sbjct: 516 TMERMP 521



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 102/237 (43%), Gaps = 37/237 (15%)

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYA-RCGVVEA----ANCVFNTMPNVDSV 485
           +G   + RQLHAQ++H    +SL   N  + +    C  + A     + +FN+  N +  
Sbjct: 11  VGNFNHLRQLHAQIIH----NSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVF 66

Query: 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN------HAGLVKEGR 539
            + +M+       + A+ + +YEQM   G+ PD   +  ++ +        HA ++K G 
Sbjct: 67  VFTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGTGGIGFHAHVLKLGH 126

Query: 540 RYFETMHGPYGIPPGEDHYAR--FIDLLCRAGKFSEAKDVIDSLP-FKPSAPIWEALLAG 596
                         G D + R   ID+  R G    A+ V D +P ++     W A+++G
Sbjct: 127 --------------GSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSG 172

Query: 597 CRIHGNIDLGIQAAEQLFQLMPH-HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
              +   +   Q A+ LF +MP  +  T+  +   YA +   + A R    M +R V
Sbjct: 173 ---YWKWESEGQ-AQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSV 225


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 246/675 (36%), Positives = 378/675 (56%), Gaps = 74/675 (10%)

Query: 117 YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE-EEKQCMQMHCT 175
           +N +++A+S      AA+ +FR +     +P++ TFT  L+A A + + +  + +++   
Sbjct: 76  WNGLLSAHSRAGAPGAALRVFRALP-SSARPNSTTFTLTLTACARLGDLDAAESVRVRAF 134

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
               G  +F  V +AL+ +Y +C           M  A RVFD MP +D ++W+TM+ G+
Sbjct: 135 AAGYGHDVF--VCSALLHLYSRC---------GAMEEAIRVFDGMPRKDRVAWSTMVAGF 183

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
           V       A      M E+                       +  DE     VI AC ++
Sbjct: 184 VTAGRPVEALAMYSRMREH----------------------GVSDDEVVMVGVIQACMST 221

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
           G  R+G  VH  LLR   +      +    +LV++Y K G ++ A  +F  MP R+ V+W
Sbjct: 222 GNARIGASVHGRLLRHCMR----MDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTW 277

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           +A++S                               G AQNG   E L LF +++ +G +
Sbjct: 278 SALIS-------------------------------GFAQNGRAVEALDLFRELQADGLQ 306

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           PC +A   A+ +CA +G L+ G+ +H  ++    +     G A++ MY++CG +E+A  +
Sbjct: 307 PCSWALVSALLACASVGFLKLGKSIHGFILRR-LEWQCILGTAVLDMYSKCGSLESARKL 365

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           FN + + D V WNA+IA  G HG G  A+ L++++ + GI PD  TF ++LSA +H+GLV
Sbjct: 366 FNKLSSRDLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLV 425

Query: 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
           +EG+ +F+ M   +GI P E HY   +DLL R+G   EA D++ S+  +P+  IW  LL+
Sbjct: 426 EEGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQTEPTIAIWVILLS 485

Query: 596 GCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKE 655
           GC  +  ++LG   A+++ +L P   G   L+SN+YA   +WD    +RKLM+D G KK 
Sbjct: 486 GCLNNKKLELGETIAKKILELRPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKV 545

Query: 656 PGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQK 715
           PG S IEV    H F+++D +HP+ + + K + +L  EMRKLGYVP T+FV HD++ DQ 
Sbjct: 546 PGYSLIEVKGTRHAFVMEDQSHPQHREILKMVAKLNSEMRKLGYVPRTEFVYHDLDEDQ- 604

Query: 716 EYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKR 775
              LS HSE+LA+AFGL+    G  + ++KNLR+CGDCH+A K++SK+V REIVVRD KR
Sbjct: 605 --LLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISKIVDREIVVRDAKR 662

Query: 776 FHHFRDGKCSCGDYW 790
           FHHF+DG CSCGDYW
Sbjct: 663 FHHFKDGACSCGDYW 677



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 125/282 (44%), Gaps = 27/282 (9%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           T ++  YS   +++ AR++FNK  L  RD V +NA+I     +  GH A+ LF+++    
Sbjct: 347 TAVLDMYSKCGSLESARKLFNK--LSSRDLVLWNAIIACCGTHGCGHDALALFQELNETG 404

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL----ISVYVKCVS 200
           +KPD+ TF S+LSAL+            H  +V+ G   F  ++          +  C+ 
Sbjct: 405 IKPDHATFASLLSALS------------HSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIV 452

Query: 201 SPFVSSRSLMGAARRVFDEMPERDELS-WTTMMTGYVKNDYLD----AAREFLDGMSENV 255
                S  L+  A  +   M     ++ W  +++G + N  L+     A++ L+   E++
Sbjct: 453 DLLARS-GLVEEANDMLASMQTEPTIAIWVILLSGCLNNKKLELGETIAKKILELRPEDI 511

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           GV   AL+S       K   +R ++ +    S         L  +    HA+++  ++ P
Sbjct: 512 GVL--ALVSNLYAAAKKWDKVR-EIRKLMKDSGSKKVPGYSLIEVKGTRHAFVMEDQSHP 568

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA 357
                L +   L +   K G V     +++ + E  L+S+++
Sbjct: 569 QHREILKMVAKLNSEMRKLGYVPRTEFVYHDLDEDQLLSYHS 610


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 258/765 (33%), Positives = 405/765 (52%), Gaps = 97/765 (12%)

Query: 107 TPLKMRD--TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE 164
           TP +  D     YNA I  +    +   A+EL    ++ +++    T+ SVL  L   ++
Sbjct: 57  TPTRTIDHQVTDYNAKILHFCQLGDLENAMELICMCQKSELETK--TYGSVLQ-LCAGLK 113

Query: 165 EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERD 224
                 ++H  +  +  G+  ++   L+S Y  C           +   RRVFD M +++
Sbjct: 114 SFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGD---------LKEGRRVFDTMEKKN 164

Query: 225 ELSWTTMMTGYVK-NDYLDA-------------------AREFLDGMSENVGVAWNALIS 264
              W  M++ Y K  D+ ++                   A E  D + +   ++WN++IS
Sbjct: 165 VYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMIS 224

Query: 265 GYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           GYV   L         +M+ L I +D  T  SV+  CANSG   LGK VH+  +++  + 
Sbjct: 225 GYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFER 284

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
              FS    N L+ +Y KCG ++ A  +F +M ER++VSW ++++ Y   G  D A  L 
Sbjct: 285 RINFS----NTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLL 340

Query: 376 EAMR---------------------------------------ERNLLSWTVMISGLAQN 396
           + M                                        E NL     ++   A+ 
Sbjct: 341 QQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKC 400

Query: 397 GYGEEGLKLFSQMRLEG----------FKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
           G  E    +FS M ++            KP     A  + +CA L ALE G+++H  ++ 
Sbjct: 401 GSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYILR 460

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
           +GY S     NAL+ +Y +CGV+  A  +F+ +P+ D VSW  MIA  G HG G  AI  
Sbjct: 461 NGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIAT 520

Query: 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
           + +M   GI PD ++F+++L AC+H+GL+++G R+F  M   + I P  +HYA  +DLL 
Sbjct: 521 FNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLS 580

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626
           R G  S+A + +++LP  P A IW ALL GCR + +I+L  + AE++F+L P + G YVL
Sbjct: 581 RTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVL 640

Query: 627 LSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLV-DDTAHPEAQAVYK 685
           L+N+YA   +W++  R+R+ +  +G++K PGCSWIE+  KV++F+  ++++HP ++ +  
Sbjct: 641 LANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIES 700

Query: 686 YLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLK 745
            L+++  +M++ G+ P TK+ L + +  QKE AL  HSEKLA+AFGL+ LP   T+RV K
Sbjct: 701 LLKKMRRKMKEEGHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTK 760

Query: 746 NLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           NLR+CGDCH   KFMSK   REIV+RD  RFHHF+DG CSC  +W
Sbjct: 761 NLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 141/570 (24%), Positives = 235/570 (41%), Gaps = 123/570 (21%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y S LQLC      T    + VH+ + S+       +  +L+  Y     L   R +FD 
Sbjct: 102 YGSVLQLCAGLKSFTD--GKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDT 159

Query: 76  IPQPDIVARTTLIAAYSASDNVK--------------------LAREMFNKTPLKMRDTV 115
           + + ++     +++ Y+   + K                     A E+F+K  L  RD +
Sbjct: 160 MEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDK--LCDRDVI 217

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA----LIVEEEKQCMQ 171
            +N+MI+ Y  N      + +++ M    +  D  T  SVL   A    L + +      
Sbjct: 218 SWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGK-----A 272

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H   +KS      +  N L+ +Y KC           +  A RVF++M ER+ +SWT+M
Sbjct: 273 VHSLAIKSSFERRINFSNTLLDMYSKCGD---------LDGALRVFEKMGERNVVSWTSM 323

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           + GY ++   D A + L  M E  GV                     +LD    TS++ A
Sbjct: 324 IAGYTRDGRSDGAIKLLQQM-EKEGV---------------------KLDVVAITSILHA 361

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           CA SG    GK VH Y+         E +L V NAL+ +Y KCG +  A  +F+ M  +D
Sbjct: 362 CARSGSLDNGKDVHDYI----KANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKD 417

Query: 352 LVSW-------------------------------------------------NAILSAY 362
           ++SW                                                 NA++  Y
Sbjct: 418 IISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLY 477

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
           V  G++  A+ LF+ +  ++L+SWTVMI+G   +GYG E +  F++MR  G +P + +F 
Sbjct: 478 VKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFI 537

Query: 423 GAITSCAGLGALENG-RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
             + +C+  G LE G R  +        +  L     ++ + +R G +  A     T+P 
Sbjct: 538 SILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPI 597

Query: 482 V-DSVSWNAMIAALGQHGNGARAIELYEQM 510
             D+  W A++     + +    IEL E++
Sbjct: 598 APDATIWGALLCGCRNYHD----IELAEKV 623


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 275/766 (35%), Positives = 399/766 (52%), Gaps = 85/766 (11%)

Query: 33  LARSVHAHMISSGF--KPREHI-INRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           L R  HA  +  GF  + RE    N L+ +Y +   +  A++LF          RTT  A
Sbjct: 190 LGREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLF----------RTT-AA 238

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
           A+S                    D V +N MI+          A+E+  DM    V+PD 
Sbjct: 239 AFSPGGG----------------DVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDG 282

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS-VLNALISVYVKCVSSPFVSSRS 208
            TF S L A + + E      +MH  V+K       S V +AL+ +Y         +   
Sbjct: 283 VTFASALPACSRL-EMLALGREMHAVVLKDADLAANSFVASALVDMY---------AGNE 332

Query: 209 LMGAARRVFDEMPE--RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
            + +ARRVFD +PE  R    W  M+ GY +    + A E    M    G A +      
Sbjct: 333 KVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPS------ 386

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                          E T + V+ ACA S  F   + +H Y+++        F   V NA
Sbjct: 387 ---------------ETTMSGVLPACARSEGFAGKEAMHGYVVK-RGMAGNRF---VQNA 427

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           L+ +Y + G+++ AR IF  +  RD+VSWN +++  V  G   EA   F+ + E  L S 
Sbjct: 428 LMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEA---FQLVTEMQLPSP 484

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
           +   S   + G     +            P +      +  CA L A   G+++H   V 
Sbjct: 485 SPSSSSTTEEGEAHRCM------------PNNITLMTLLPGCAALAAPARGKEIHGYAVR 532

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
              +S ++ G+AL+ MYA+CG + A+  VF+ +P  + ++WN +I A G HG G  A+ L
Sbjct: 533 HALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVAL 592

Query: 507 YEQMLKEG-ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLL 565
           +++M   G   P+ +TF+  L+AC+H+GLV  G   F  M   +G+ P  D +A  +D+L
Sbjct: 593 FDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVL 652

Query: 566 CRAGKFSEAKDVIDSL-PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624
            RAG+  EA  +I S+ P +     W +LL  CR+H N++LG  AAE+LF+L P  A  Y
Sbjct: 653 GRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFELEPGEASHY 712

Query: 625 VLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVY 684
           VLL N+Y+  G WD +  VR  MR +GV KEPGCSWIE+D  +H F+  +++HP +  V+
Sbjct: 713 VLLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIELDGAIHRFMAGESSHPASAEVH 772

Query: 685 KYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVL 744
            +++ L   MR+ GY PDT  VLHD++ D+K   L  HSEKLA+AFGL++ P GA +RV 
Sbjct: 773 AHMDALWERMRREGYAPDTSCVLHDVDEDEKAAMLRYHSEKLAIAFGLLRAPPGAAIRVA 832

Query: 745 KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KNLR+C DCH A KFMSK+VGR+IV+RD +RFHHFRDG CSCGDYW
Sbjct: 833 KNLRVCNDCHEAAKFMSKMVGRDIVLRDVRRFHHFRDGSCSCGDYW 878



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 152/614 (24%), Positives = 254/614 (41%), Gaps = 103/614 (16%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           +P       L+ AY+   ++  A  +F  T  ++RD V YN++I+A         A++  
Sbjct: 97  RPSPAVGNALLTAYARCGDLDAALALFAATATELRDAVSYNSLISALCLFRQWERALDAL 156

Query: 138 RDM---RRDDVKPDNFTFTSVLSALALIVEEEKQCM--QMHCTVVKSG---TGLFTSVLN 189
           RDM    R DV   +FT  SVL A + +  ++ + +  + H   +K G    G      N
Sbjct: 157 RDMLAEGRHDVS--SFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGFLDEGRERFPFN 214

Query: 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD 249
           AL+S+Y +        ++SL       F      D ++W TM++  V+      A E L 
Sbjct: 215 ALLSMYARL--GLVDDAQSLFRTTAAAFSP-GGGDVVTWNTMISLLVQGGRCAEAVEVL- 270

Query: 250 GMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
                                  M+ L ++ D  T+ S + AC+   +  LG+++HA +L
Sbjct: 271 ---------------------YDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVL 309

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--RDLVSWNAILSAYVSAGL 367
           +        F   V +ALV +Y    KV  AR +F+ +PE  R L  WNA++  Y  AG+
Sbjct: 310 KDADLAANSF---VASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGM 366

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAIT 426
                                           EE L+LFS+M  E G  P +   +G + 
Sbjct: 367 -------------------------------DEEALELFSRMEAEAGCAPSETTMSGVLP 395

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
           +CA          +H  +V  G   +    NAL+ MYAR G ++ A  +F  +   D VS
Sbjct: 396 ACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVS 455

Query: 487 WNAMIAALGQHGNGARAIELYEQM------------LKEG----ILPDRITFLTVLSACN 530
           WN +I      G+ A A +L  +M             +EG     +P+ IT +T+L  C 
Sbjct: 456 WNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGC- 514

Query: 531 HAGLVKEGRRYFETMHGPYGIPPGEDH----YARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
            A L    R   + +HG Y +    +      +  +D+  + G  + ++ V D LP + +
Sbjct: 515 -AALAAPARG--KEIHG-YAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLP-RRN 569

Query: 587 APIWEALLAGCRIHGNIDLGIQAAEQLF---QLMPHHAGTYVLLSNMYANLGRWDDAARV 643
              W  L+    +HG  D  +   +++    +  P+   T++      ++ G  D    +
Sbjct: 570 VITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEV-TFIAALAACSHSGLVDRGLEL 628

Query: 644 -RKLMRDRGVKKEP 656
              + RD GVK  P
Sbjct: 629 FHGMERDHGVKPTP 642


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/620 (37%), Positives = 347/620 (55%), Gaps = 68/620 (10%)

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           + +AR+VFDE+PER+ +    M+  YV N +            E V V            
Sbjct: 90  VASARKVFDEIPERNVIIINVMIRSYVNNGFY----------GEGVKVFGT--------- 130

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
              M    ++ D +T+  V+ AC+ SG   +G+++H    +     T    L V N LV+
Sbjct: 131 ---MCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSST----LFVGNGLVS 183

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA------------------ 371
           +Y KCG ++EAR + ++M  RD+VSWN+++  Y      D+A                  
Sbjct: 184 MYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGT 243

Query: 372 -------------------KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
                              K +F  M +++L+SW VMI    +N    E ++L+S+M  +
Sbjct: 244 MASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEAD 303

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
           GF+P   +    + +C    AL  G+++H  +       +L   NALI MYA+CG +E A
Sbjct: 304 GFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKA 363

Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
             VF  M + D VSW AMI+A G  G G  A+ L+ ++   G++PD I F+T L+AC+HA
Sbjct: 364 RDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHA 423

Query: 533 GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592
           GL++EGR  F+ M   Y I P  +H A  +DLL RAGK  EA   I  +  +P+  +W A
Sbjct: 424 GLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGA 483

Query: 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           LL  CR+H + D+G+ AA++LFQL P  +G YVLLSN+YA  GRW++   +R +M+ +G+
Sbjct: 484 LLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGL 543

Query: 653 KKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMES 712
           KK PG S +EV+  +H FLV D +HP++  +Y+ L+ LV +M++LGYVPD++  LHD+E 
Sbjct: 544 KKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEE 603

Query: 713 DQKEYALSTHSEKLAVAFGLMKLP-----GGATVRVLKNLRICGDCHNAFKFMSKVVGRE 767
           + KE  L+ HSEKLA+ F LM           T+R+ KNLRICGDCH A K +S++  RE
Sbjct: 604 EDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSRE 663

Query: 768 IVVRDGKRFHHFRDGKCSCG 787
           I++RD  RFH FR G CSC 
Sbjct: 664 IIIRDTNRFHVFRFGVCSCA 683



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 135/509 (26%), Positives = 224/509 (44%), Gaps = 110/509 (21%)

Query: 48  PREHI--INRLIDIY--CKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREM 103
           P+E +  + +++D Y   ++L+ V++R + +++     +    L+ AY++  +V  AR++
Sbjct: 38  PQETVFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLG-VKLMRAYASLKDVASARKV 96

Query: 104 FNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA--- 160
           F++ P   R+ +  N MI +Y +N      +++F  M   +V+PD++TF  VL A +   
Sbjct: 97  FDEIP--ERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSG 154

Query: 161 LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEM 220
            IV   K    +H +  K G      V N L+S+Y KC           +  AR V DEM
Sbjct: 155 TIVIGRK----IHGSATKVGLSSTLFVGNGLVSMYGKC---------GFLSEARLVLDEM 201

Query: 221 PERDELSWTTMMTGYVKNDYLDAAREFLDGM-----------------------SENVG- 256
             RD +SW +++ GY +N   D A E    M                       +ENV  
Sbjct: 202 SRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMY 261

Query: 257 -------------VAWNALISGYVHRELKM----LMLRIQLDEF-----TYTSVISACAN 294
                        V+WN +I  Y+   + +    L  R++ D F     + TSV+ AC +
Sbjct: 262 VKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGD 321

Query: 295 SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS 354
           +    LGK++H Y+ R +  P    +L + NAL+ +Y KCG + +ARD+F  M  RD+VS
Sbjct: 322 TSALSLGKKIHGYIERKKLIP----NLLLENALIDMYAKCGCLEKARDVFENMKSRDVVS 377

Query: 355 WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF 414
           W A++SAY                                 +G G + + LFS+++  G 
Sbjct: 378 WTAMISAY-------------------------------GFSGRGCDAVALFSKLQDSGL 406

Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLV-HSGYDSSLSAGNALITMYARCGVVEAAN 473
            P   AF   + +C+  G LE GR     +  H      L     ++ +  R G V+ A 
Sbjct: 407 VPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAY 466

Query: 474 CVFNTM---PNVDSVSWNAMIAALGQHGN 499
                M   PN     W A++ A   H +
Sbjct: 467 RFIQDMSMEPN--ERVWGALLGACRVHSD 493



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 134/305 (43%), Gaps = 19/305 (6%)

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
           ++ AY S   +  A+ +F+ + ERN++   VMI     NG+  EG+K+F  M     +P 
Sbjct: 80  LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
            Y F   + +C+  G +  GR++H      G  S+L  GN L++MY +CG +  A  V +
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG---- 533
            M   D VSWN+++    Q+     A+E+  +M    I  D  T  ++L A ++      
Sbjct: 200 EMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 259

Query: 534 ------LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSA 587
                   K G++   + +   G+          ++L  R        D +      P+ 
Sbjct: 260 MYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPAC 319

Query: 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647
               AL  G +IHG I+          +L+P+      L+ +MYA  G  + A  V + M
Sbjct: 320 GDTSALSLGKKIHGYIERK--------KLIPNLLLENALI-DMYAKCGCLEKARDVFENM 370

Query: 648 RDRGV 652
           + R V
Sbjct: 371 KSRDV 375



 Score = 56.2 bits (134), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 9/194 (4%)

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           R +H++++      + S G  L+  YA    V +A  VF+ +P  + +  N MI +   +
Sbjct: 59  RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP---YGIPPG 554
           G     ++++  M    + PD  TF  VL AC+ +G +  GR+    +HG     G+   
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRK----IHGSATKVGLSST 174

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
                  + +  + G  SEA+ V+D +  +     W +L+ G   +   D  ++   ++ 
Sbjct: 175 LFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVS-WNSLVVGYAQNQRFDDALEVCREME 233

Query: 615 QL-MPHHAGTYVLL 627
            + + H AGT   L
Sbjct: 234 SVKISHDAGTMASL 247



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 35/143 (24%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           SL + +H ++      P   + N LID+Y K   L  AR +F+ +   D+V+ T      
Sbjct: 326 SLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWT------ 379

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                                      AMI+AY  +  G  A+ LF  ++   + PD+  
Sbjct: 380 ---------------------------AMISAYGFSGRGCDAVALFSKLQDSGLVPDSIA 412

Query: 152 FTSVLSAL--ALIVEEEKQCMQM 172
           F + L+A   A ++EE + C ++
Sbjct: 413 FVTTLAACSHAGLLEEGRSCFKL 435


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 248/667 (37%), Positives = 372/667 (55%), Gaps = 69/667 (10%)

Query: 124 YSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGL 183
           +S   +  +A+ +FR +     +PD+ TFT  LSA A +  + +    +      +G   
Sbjct: 84  HSRRGSPASALRVFRALP-PAARPDSTTFTLALSACARL-GDLRGGESVRDRAFDAGYKD 141

Query: 184 FTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDA 243
              V ++L+ +Y +            MG A +VFD MP RD ++W+TM+ G+V      +
Sbjct: 142 DVFVCSSLLHLYARW---------GAMGDAVKVFDRMPRRDRVTWSTMVAGFV------S 186

Query: 244 AREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ 303
           A + LD +               ++R  +M    ++ DE     VI AC  +   R+G  
Sbjct: 187 AGQPLDAIQ--------------MYR--RMREDGVKGDEVVMIGVIQACTAARNVRMGAS 230

Query: 304 VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV 363
           VH +LLR   +                                    D+V+  +++  Y 
Sbjct: 231 VHGHLLRHGMR-----------------------------------MDVVTATSLVDMYA 255

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
             GL+D A  +F  M  RN +SW+ MISG AQNG  +E L+LF  M+  G +P   A   
Sbjct: 256 KNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVS 315

Query: 424 AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
           A+ +C+ +G L+ GR +H  +V   +D +   G A I MY++CG + +A  +FN + + D
Sbjct: 316 ALLACSNIGFLKLGRSVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRD 374

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFE 543
            + WNAMIA  G HG G  A+ L+++M + G+ PD  TF ++LSA +H+GLV+EG+ +F 
Sbjct: 375 LILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFG 434

Query: 544 TMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNI 603
            M   + I P E HY   +DLL R+G   EA D++ S+  +P+  IW ALL+GC  +  +
Sbjct: 435 CMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKL 494

Query: 604 DLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEV 663
           +LG   A+ + +L P   G   L+SN+YA   +WD   +VRKLM+D G KK PGCS IE+
Sbjct: 495 ELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEI 554

Query: 664 DNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHS 723
               H FL++D +HP+ + +   + +L LEMRK+GY+P T+FV HD+E + KE  LS HS
Sbjct: 555 RGTRHAFLMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHS 614

Query: 724 EKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGK 783
           EKLA+AFGL+    G  + ++KNLR+CGDCH+A K++SK+  REIVVRD KRFHHF+DG 
Sbjct: 615 EKLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGV 674

Query: 784 CSCGDYW 790
           CSC DYW
Sbjct: 675 CSCRDYW 681



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 102/244 (41%), Gaps = 29/244 (11%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           T  I  YS   ++  A+ +FN   +  RD + +NAMI     +  G  A+ LF++M    
Sbjct: 348 TAAIDMYSKCGSLASAQMLFNM--ISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETG 405

Query: 145 VKPDNFTFTSVLSALAL--IVEEEK---QCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           ++PD+ TF S+LSAL+   +VEE K    CM  H  +  +               YV  V
Sbjct: 406 MRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKH------------YVCLV 453

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELS-WTTMMTGYVKNDYLDAAREFLDGMSE----N 254
               ++   L+  A  +   M     ++ W  +++G + N  L+      D + E    +
Sbjct: 454 D--LLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDD 511

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
           VGV   AL+S       K   +R Q+ +    S            +    HA+L+  ++ 
Sbjct: 512 VGVL--ALVSNLYAATKKWDKVR-QVRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSH 568

Query: 315 PTPE 318
           P  E
Sbjct: 569 PQRE 572


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/622 (37%), Positives = 359/622 (57%), Gaps = 52/622 (8%)

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
           VKC ++P  S+ +    A +VF+ +P  +   +  ++ G ++N+                
Sbjct: 69  VKCYANPHFSNLNF---ALKVFEYVPNPNVFVFNIIIKGCLQNNE--------------- 110

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                A+   Y     KM++   + ++FTY ++  AC  +     G QVHA++++     
Sbjct: 111 --PCKAICCYY-----KMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSG 163

Query: 316 TPEF---------------------------SLPVNNALVTLYWKCGKVNEARDIFNQMP 348
                                           +   NA++  Y KCG+V  A+++F  M 
Sbjct: 164 DVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSME 223

Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQ 408
           ++++ SWN ++S     G+I+EA+ LF  M+E+N +SW+ MI G  + GY +E L++F+ 
Sbjct: 224 DKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNV 283

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
           M+ E  +P  +  +  + +CA LGAL+ GR +HA + ++        G AL+ MYA+CG 
Sbjct: 284 MQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGR 343

Query: 469 VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
           ++ A  VF  M   +  +WNAMI  LG HG    AIEL+ +M K+   P+ IT L VLSA
Sbjct: 344 LDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSA 403

Query: 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
           C H+G+V EG R F +M   YGI PG +HY   +DLL RAG   EA++V+ S+P +PSA 
Sbjct: 404 CAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAA 463

Query: 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648
           +W ALL  CR HG+++LG +  + L +L P ++G Y LLSN+YA  GRWDD A VRKLM+
Sbjct: 464 VWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMK 523

Query: 649 DRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLH 708
           +RGVK   G S I+ D  VH F + D +HP+ + +Y  L+ ++  ++  G+ P+T  VL 
Sbjct: 524 ERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNMIKRLKMEGFSPNTSQVLF 583

Query: 709 DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREI 768
           D+E ++KE  L  HSEKLA+AFGL+    G T+ V+KNLR+C DCH+AFK +S+V  REI
Sbjct: 584 DIEEEEKEAELQYHSEKLAIAFGLINTKPGTTIHVVKNLRMCEDCHSAFKLISQVYDREI 643

Query: 769 VVRDGKRFHHFRDGKCSCGDYW 790
           +VRD  R+HHF+ G CSC D+W
Sbjct: 644 IVRDRARYHHFKTGTCSCKDFW 665



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 120/494 (24%), Positives = 212/494 (42%), Gaps = 98/494 (19%)

Query: 64  LKLVYARTLFDEIPQPDIVARTTLIAAYSAS--DNVKLAREMFNKTPLKMRDTVF-YNAM 120
           LK V+A  L     Q   V+  TL+  Y+     N+  A ++F   P      VF +N +
Sbjct: 46  LKQVHAVALRTGHFQDHYVS-GTLVKCYANPHFSNLNFALKVFEYVP---NPNVFVFNII 101

Query: 121 ITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSG 180
           I     N+    AI  +  M     +P+ FT+ ++  A       E+  +Q+H  V+K G
Sbjct: 102 IKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEG-VQVHAHVIKQG 160

Query: 181 TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY 240
                 + +A I +Y          S   +  ARR+  E    D + +  M+ GY+K   
Sbjct: 161 LSGDVHIRSAGIQMY---------GSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGE 211

Query: 241 LDA-------------------------------AREFLDGMSENVGVAWNALISGYVHR 269
           ++A                               ARE  + M E   ++W+A+I GY+  
Sbjct: 212 VEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKG 271

Query: 270 -------ELKMLMLR--IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
                  E+  +M R  I+  +F  +SV++ACAN G    G+ +HAY+       +  F 
Sbjct: 272 GYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYV----NNNSNSFD 327

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
             +  ALV +Y KCG+++ A D+F +M ++++ +WNA                       
Sbjct: 328 AVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNA----------------------- 364

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
                   MI GL  +G  E+ ++LF +M+ + F+P      G +++CA  G ++ G ++
Sbjct: 365 --------MICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRI 416

Query: 441 HAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHG 498
              +    G +  +     ++ +  R G++  A  V  +MP   S + W A++ A  +HG
Sbjct: 417 FNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHG 476

Query: 499 NGARAIELYEQMLK 512
           +    +EL E++ K
Sbjct: 477 D----VELGERVGK 486



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 140/311 (45%), Gaps = 40/311 (12%)

Query: 53  INRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMR 112
            N +ID Y K  ++  A+ LF  +   ++ +   +++  +    ++ ARE+FN+  +K +
Sbjct: 199 FNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNE--MKEK 256

Query: 113 DTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQM 172
           + + ++AMI  Y        A+E+F  M+R++++P  F  +SVL+A A +   + Q   +
Sbjct: 257 NEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALD-QGRWI 315

Query: 173 HCTVVKSGTGLFTSVL-NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           H   V + +  F +VL  AL+ +Y KC           +  A  VF++M +++  +W  M
Sbjct: 316 H-AYVNNNSNSFDAVLGTALVDMYAKC---------GRLDMAWDVFEKMEKKEVFTWNAM 365

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           + G   +   + A E                         KM   + + +  T   V+SA
Sbjct: 366 ICGLGMHGRAEDAIELF----------------------FKMQKQKFRPNGITLLGVLSA 403

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ER 350
           CA+SG+   G ++   +   E     E  +     +V L  + G + EA ++   MP E 
Sbjct: 404 CAHSGMVDEGLRIFNSM---EEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEP 460

Query: 351 DLVSWNAILSA 361
               W A+L A
Sbjct: 461 SAAVWGALLGA 471


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 250/644 (38%), Positives = 354/644 (54%), Gaps = 66/644 (10%)

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           P + TF   L + + +    +   Q+H   +K  +     VL +L+++Y +C        
Sbjct: 115 PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARC-------- 166

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
             L+  A+RVFDEMP    +SWT ++T Y     +DA       + E V VA NA  +G 
Sbjct: 167 -GLLHRAQRVFDEMPHPSTVSWTALITAY-----MDAG-----DLREAVHVARNAFANG- 214

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                      ++ D FT   V++ACA       G+ V     R   +     S+ V  A
Sbjct: 215 -----------MRPDSFTAVRVLTACARVADLATGETV----WRAAEQEGIAQSVFVATA 259

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
            V LY KCG++ +AR++                               F+ MR+++ ++W
Sbjct: 260 AVDLYVKCGEMAKAREV-------------------------------FDKMRDKDAVAW 288

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
             M+ G A NG+  E L LF  M+ EG +P  YA AGA+++C  LGAL+ GRQ    +  
Sbjct: 289 GAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDW 348

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
             +  +   G ALI MYA+CG    A  VF  M   D + WNAMI  LG  G+   A  L
Sbjct: 349 DEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTL 408

Query: 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
             QM K G+  +  TF+ +L +C H GL+++GRRYF  M   Y I P  +HY   +DLL 
Sbjct: 409 IGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLS 468

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626
           RAG   EA  +ID +P   +A I  ALL GC+IH N +L      QL +L P ++G YV+
Sbjct: 469 RAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVM 528

Query: 627 LSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKY 686
           LSN+Y+N GRW+DAA++R  M+++GV+K P CSW+E + KVH F V D +HP +  +YK 
Sbjct: 529 LSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKK 588

Query: 687 LEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKN 746
           L++L LEM+ +GY P T+ V+ D+E ++KE+ L  HSEKLA+AF L+    G T+RV KN
Sbjct: 589 LDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKN 648

Query: 747 LRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           LR+C DCH A K +S++  REI+VRD  RFH FRDG CSC DYW
Sbjct: 649 LRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 692



 Score =  122 bits (306), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 115/493 (23%), Positives = 193/493 (39%), Gaps = 110/493 (22%)

Query: 26  RNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVART 85
           R P        +HA  +        H++  L+ +Y +   L  A+ +FDE+P P      
Sbjct: 129 RLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPS----- 183

Query: 86  TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
                                       TV + A+ITAY    +   A+ + R+   + +
Sbjct: 184 ----------------------------TVSWTALITAYMDAGDLREAVHVARNAFANGM 215

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSG--TGLFTSVL--NALISVYVKCVSS 201
           +PD+FT   VL+A A + +     +    TV ++    G+  SV    A + +YVKC   
Sbjct: 216 RPDSFTAVRVLTACARVAD-----LATGETVWRAAEQEGIAQSVFVATAAVDLYVKC--- 267

Query: 202 PFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNA 261
                   M  AR VFD+M ++D ++W  M+ GY  N +    RE LD            
Sbjct: 268 ------GEMAKAREVFDKMRDKDAVAWGAMVGGYASNGH---PREALDLF---------- 308

Query: 262 LISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
                    L M    ++ D +     +SAC   G   LG+Q    +   E    P    
Sbjct: 309 ---------LAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNP---- 355

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
            +  AL+ +Y KCG   EA  +F QM ++D++ WNA                        
Sbjct: 356 VLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNA------------------------ 391

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
                  MI GL   G+ +    L  QM   G K  D  F G + SC   G +++GR+  
Sbjct: 392 -------MILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYF 444

Query: 442 AQLVHSGYDSS-LSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
             +    + S  +     ++ + +R G+++ A+ + + MP   ++V   A++     H N
Sbjct: 445 HNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRN 504

Query: 500 GARAIELYEQMLK 512
              A  +  Q+++
Sbjct: 505 AELAEHVLTQLIR 517



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 169/406 (41%), Gaps = 73/406 (17%)

Query: 33  LARSVHA--HMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
           L  +VH   +  ++G +P      R++    +   L    T++    Q  I A++  +A 
Sbjct: 200 LREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGI-AQSVFVAT 258

Query: 91  YSASDNVKL-----AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
            +    VK      ARE+F+K  ++ +D V + AM+  Y+ N +   A++LF  M+ + V
Sbjct: 259 AAVDLYVKCGEMAKAREVFDK--MRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGV 316

Query: 146 KPDNFTFTSVLSALALI--VEEEKQCMQMHCTVVKSGTGLFTSVL-NALISVYVKCVSSP 202
           +PD +     LSA   +  ++  +Q ++M    V     L   VL  ALI +Y KC S+ 
Sbjct: 317 RPDCYAVAGALSACTRLGALDLGRQAIRM----VDWDEFLDNPVLGTALIDMYAKCGST- 371

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTM-----MTGYVKNDYLDAAREFLDGMSENVGV 257
                     A  VF +M ++D + W  M     MTG+ K  +       L G  E  GV
Sbjct: 372 --------AEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFT------LIGQMEKSGV 417

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ-VHAYLLRTEAKPT 316
                                +L++ T+  ++ +C ++GL + G++  H         P 
Sbjct: 418 ---------------------KLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPR 456

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
            E        +V L  + G + EA  + + MP   + +   IL A +    I     L E
Sbjct: 457 IEHY----GCIVDLLSRAGLLQEAHQLIDDMP---MPANAVILGALLGGCKIHRNAELAE 509

Query: 377 AMRER--NLLSWT----VMISGLAQN-GYGEEGLKLFSQMRLEGFK 415
            +  +   L  W     VM+S +  N G  E+  KL   M+ +G +
Sbjct: 510 HVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVE 555


>gi|302786876|ref|XP_002975209.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
 gi|300157368|gb|EFJ23994.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
          Length = 805

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 274/779 (35%), Positives = 404/779 (51%), Gaps = 112/779 (14%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           ++L+  Y    +++ A ++F+K   K    V +  +I+AY    +  AAI LF  + ++ 
Sbjct: 66  SSLVYMYLRCGSLESAIDVFHKIAHK--SIVLWTVLISAYVSRGHSAAAIALFHRILQEG 123

Query: 145 VKPDNFTFTSVLSALALIVEEE--KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSP 202
           +  D   F SVLSA +    EE       +H   V++G GL   V +AL+S+Y +C S  
Sbjct: 124 IALDAIVFVSVLSACS---SEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGS-- 178

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL 262
              + +L G   R  D +       W  M+T   +N     A E                
Sbjct: 179 LRDANALFGHLERHLDVVL------WNAMITANSQNGSPREALEIF-------------- 218

Query: 263 ISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG--KQVHAYLLRTEAKPTPEFS 320
                    +ML L I  D  T+ SV  AC++S   R    K  H  L  T         
Sbjct: 219 --------YRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHTCLDETGLGS----D 266

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVS---------------A 365
           + V  ALV  Y +CG+++ AR+ F  MPER+ VSW ++++A+                  
Sbjct: 267 VVVATALVNAYARCGEIDCAREFFAAMPERNAVSWTSMIAAFAQIGHLLAVETFHAMLLE 326

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQN---------------GYG----------- 399
           G++    +LF A+     L    ++  +AQ                 Y            
Sbjct: 327 GVVPTRSTLFAALEGCEDLHTARLVEAIAQEIGVATDVAIVTDLVMAYARCDGQEDAIRV 386

Query: 400 ----EEG----------LKLFSQMR-------------LEGFKPCDYAFAGAITSCAGLG 432
               EEG          + +++Q R               G  P    +  A+ +CA L 
Sbjct: 387 FSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITALDACASLA 446

Query: 433 ALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
           AL  GRQ+HA +      D  ++ GNA+++MY +CG +  A   F+ MP  D +SWNAM+
Sbjct: 447 ALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEISWNAML 506

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
           +A  QHG      +L+  ML+EG   +R+ FL +LSAC HAGLV+ G  +F  M G +G+
Sbjct: 507 SASAQHGRVEDCCDLFRAMLQEGFDAERVAFLNLLSACAHAGLVEAGCEHFSAMTGDHGV 566

Query: 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611
            P  +HY   +DLL R G+ ++A  ++ ++P  P A  W AL+  CRI+G+ + G  AAE
Sbjct: 567 VPATEHYGCMVDLLGRKGRLADAHGIVQAMPVPPDAATWMALMGACRIYGDTERGRFAAE 626

Query: 612 QLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFL 671
           ++ +L  +H   YV L N+Y+  GRW+DAA VRK+M D G++K PG S IE+ +KVH F+
Sbjct: 627 RVLELRANHTAAYVALCNIYSAAGRWEDAAAVRKIMADLGLRKIPGVSSIEIRSKVHEFV 686

Query: 672 VDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFG 731
           V D +HP+++A+Y  LE+++  + + GY   T  VLHD+E +QKE  L  HSEKLA+AFG
Sbjct: 687 VRDRSHPQSEAIYAELERVMGAIERAGYRAVTGEVLHDVEEEQKEQLLRFHSEKLAIAFG 746

Query: 732 LMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +M  P G+T+RV+KNLR+C DCHNA KF+SKV GREIVVRD +RFHHF+DG CSCGDYW
Sbjct: 747 MMSTPQGSTLRVIKNLRVCVDCHNASKFISKVFGREIVVRDVRRFHHFKDGACSCGDYW 805



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 115/284 (40%), Gaps = 37/284 (13%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+   T L+ AY+  D  + A  +F+       D     AMI  Y+   +  +  +L+  
Sbjct: 363 DVAIVTDLVMAYARCDGQEDAIRVFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGA 422

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMH-CTVVKSGTGLFTSVLNALISVYVKC 198
                + PD   + + L A A +    +   Q+H C           ++ NA++S+Y +C
Sbjct: 423 AIERGISPDRILYITALDACASLAALSEG-RQIHACVAADRRLDRDVTLGNAIVSMYGQC 481

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
            S         +  AR  FD MP RDE+SW  M++   ++  ++   +    M       
Sbjct: 482 GS---------LRDARDAFDGMPARDEISWNAMLSASAQHGRVEDCCDLFRAM------- 525

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
              L  G+              +   + +++SACA++GL   G + H   +  +    P 
Sbjct: 526 ---LQEGF------------DAERVAFLNLLSACAHAGLVEAGCE-HFSAMTGDHGVVP- 568

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
            +      +V L  + G++ +A  I   MP   D  +W A++ A
Sbjct: 569 -ATEHYGCMVDLLGRKGRLADAHGIVQAMPVPPDAATWMALMGA 611


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 260/761 (34%), Positives = 395/761 (51%), Gaps = 74/761 (9%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLK--LVYARTLFDEIPQPDIVARTTLIAAYS 92
           + +HAHM+ +      +  ++L+  Y  S    L+YA+ +F++IPQP++           
Sbjct: 89  KQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYC--------- 139

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK-PDNFT 151
                                   +N +I  Y+ +S+   +  +F  M     + P+ FT
Sbjct: 140 ------------------------WNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFT 175

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           F  +  A + +       + +H  V+K+       +LN+LI+ Y          S     
Sbjct: 176 FPFLFKAASRLKVLHLGSV-LHGMVIKASLSSDLFILNSLINFY---------GSSGAPD 225

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A RVF  MP +D +SW  M+  +      D A      M                    
Sbjct: 226 LAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEME------------------- 266

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
              M  ++ +  T  SV+SACA       G+ + +Y+   E     E  L +NNA++ +Y
Sbjct: 267 ---MKDVKPNVITMVSVLSACAKKIDLEFGRWICSYI---ENNGFTE-HLILNNAMLDMY 319

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            KCG +N+A+D+FN+M E+D+VSW  +L  +   G  DEA  +F+AM  +   +W  +IS
Sbjct: 320 VKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALIS 379

Query: 392 GLAQNGYGEEGLKLFSQMRL-EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
              QNG     L LF +M+L +  KP +     A+ + A LGA++ G  +H  +     +
Sbjct: 380 AYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDIN 439

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
            +     +L+ MYA+CG +  A  VF+ +   D   W+AMI AL  +G G  A++L+  M
Sbjct: 440 LNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSM 499

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
           L+  I P+ +TF  +L ACNHAGLV EG + FE M   YGI P   HY   +D+  RAG 
Sbjct: 500 LEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGL 559

Query: 571 FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630
             +A   I+ +P  P+A +W ALL  C  HGN++L   A + L +L P + G +VLLSN+
Sbjct: 560 LEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCNHGAFVLLSNI 619

Query: 631 YANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQL 690
           YA  G W+  + +RKLMRD  VKKEP CS I+V+  VH FLV D +HP +Q +Y  L+++
Sbjct: 620 YAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPFSQKIYSKLDEI 679

Query: 691 VLEMRKLGYVPDTKFVLHDMESDQ-KEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRI 749
             + + +GY PD   +L   E D   E +L+ HSEKLA+AFGL+       +R++KN+RI
Sbjct: 680 SEKFKPIGYKPDMSNLLQLSEEDNLMEQSLNVHSEKLAIAFGLISTASSQPIRIVKNIRI 739

Query: 750 CGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           CGDCH   K +S++  R+I++RD  RFHHFR GKCSC DYW
Sbjct: 740 CGDCHAFAKLVSQLYDRDILLRDRYRFHHFRGGKCSCLDYW 780



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 156/360 (43%), Gaps = 51/360 (14%)

Query: 29  ITSSLARSVHAHMISSGFKPREHII--NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTT 86
           I     R + +++ ++GF   EH+I  N ++D+Y K   +  A+ LF+++ + DIV+ TT
Sbjct: 288 IDLEFGRWICSYIENNGFT--EHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTT 345

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMR-RDDV 145
           ++  ++   N   A  +F+  P K   T  +NA+I+AY  N     A+ LF +M+   D 
Sbjct: 346 MLDGHAKLGNYDEAHCIFDAMPHKW--TAAWNALISAYEQNGKPRVALSLFHEMQLSKDA 403

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVS 205
           KPD  T    L A A +   +     +H  + K    L   +  +L+ +Y KC +     
Sbjct: 404 KPDEVTLICALCASAQLGAIDFG-HWIHVYIKKHDINLNCHLATSLLDMYAKCGN----- 457

Query: 206 SRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265
               +  A  VF  +  +D   W+ M+          AA +    M E            
Sbjct: 458 ----LNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAY---------- 503

Query: 266 YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP----TPEFSL 321
                       I+ +  T+T+++ AC ++GL   G+Q     L  + +P     P+   
Sbjct: 504 ------------IKPNAVTFTNILCACNHAGLVNEGEQ-----LFEQMEPLYGIVPQIQH 546

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSAYVSAGLIDEAKSLFEAMRE 380
            V   +V ++ + G + +A     +MP     + W A+L A    G ++ A+  ++ + E
Sbjct: 547 YV--CVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLE 604


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 250/644 (38%), Positives = 354/644 (54%), Gaps = 66/644 (10%)

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           P + TF   L + + +    +   Q+H   +K  +     VL +L+++Y +C        
Sbjct: 68  PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARC-------- 119

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
             L+  A+RVFDEMP    +SWT ++T Y     +DA       + E V VA NA  +G 
Sbjct: 120 -GLLHRAQRVFDEMPHPSTVSWTALITAY-----MDAG-----DLREAVHVARNAFANG- 167

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                      ++ D FT   V++ACA       G+ V     R   +     S+ V  A
Sbjct: 168 -----------MRPDSFTAVRVLTACARVADLATGETV----WRAAEQEGIAQSVFVATA 212

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
            V LY KCG++ +AR++                               F+ MR+++ ++W
Sbjct: 213 AVDLYVKCGEMAKAREV-------------------------------FDKMRDKDAVAW 241

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
             M+ G A NG+  E L LF  M+ EG +P  YA AGA+++C  LGAL+ GRQ    +  
Sbjct: 242 GAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDW 301

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
             +  +   G ALI MYA+CG    A  VF  M   D + WNAMI  LG  G+   A  L
Sbjct: 302 DEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTL 361

Query: 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
             QM K G+  +  TF+ +L +C H GL+++GRRYF  M   Y I P  +HY   +DLL 
Sbjct: 362 IGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLS 421

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626
           RAG   EA  +ID +P   +A I  ALL GC+IH N +L      QL +L P ++G YV+
Sbjct: 422 RAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVM 481

Query: 627 LSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKY 686
           LSN+Y+N GRW+DAA++R  M+++GV+K P CSW+E + KVH F V D +HP +  +YK 
Sbjct: 482 LSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKK 541

Query: 687 LEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKN 746
           L++L LEM+ +GY P T+ V+ D+E ++KE+ L  HSEKLA+AF L+    G T+RV KN
Sbjct: 542 LDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKN 601

Query: 747 LRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           LR+C DCH A K +S++  REI+VRD  RFH FRDG CSC DYW
Sbjct: 602 LRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score =  122 bits (307), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 115/493 (23%), Positives = 192/493 (38%), Gaps = 110/493 (22%)

Query: 26  RNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVART 85
           R P        +HA  +        H++  L+ +Y +   L  A+ +FDE+P P      
Sbjct: 82  RLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPS----- 136

Query: 86  TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
                                       TV + A+ITAY    +   A+ + R+   + +
Sbjct: 137 ----------------------------TVSWTALITAYMDAGDLREAVHVARNAFANGM 168

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSG--TGLFTSVL--NALISVYVKCVSS 201
           +PD+FT   VL+A A + +     +    TV ++    G+  SV    A + +YVKC   
Sbjct: 169 RPDSFTAVRVLTACARVAD-----LATGETVWRAAEQEGIAQSVFVATAAVDLYVKC--- 220

Query: 202 PFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNA 261
                   M  AR VFD+M ++D ++W  M+ GY  N +    RE LD            
Sbjct: 221 ------GEMAKAREVFDKMRDKDAVAWGAMVGGYASNGH---PREALDLF---------- 261

Query: 262 LISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
                    L M    ++ D +     +SAC   G   LG+Q    +   E    P    
Sbjct: 262 ---------LAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVL-- 310

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
               AL+ +Y KCG   EA  +F QM ++D++ WNA                        
Sbjct: 311 --GTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNA------------------------ 344

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
                  MI GL   G+ +    L  QM   G K  D  F G + SC   G +++GR+  
Sbjct: 345 -------MILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYF 397

Query: 442 AQLVHSGYDSS-LSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
             +    + S  +     ++ + +R G+++ A+ + + MP   ++V   A++     H N
Sbjct: 398 HNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRN 457

Query: 500 GARAIELYEQMLK 512
              A  +  Q+++
Sbjct: 458 AELAEHVLTQLIR 470



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 169/406 (41%), Gaps = 73/406 (17%)

Query: 33  LARSVHA--HMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
           L  +VH   +  ++G +P      R++    +   L    T++    Q  I A++  +A 
Sbjct: 153 LREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGI-AQSVFVAT 211

Query: 91  YSASDNVKL-----AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
            +    VK      ARE+F+K  ++ +D V + AM+  Y+ N +   A++LF  M+ + V
Sbjct: 212 AAVDLYVKCGEMAKAREVFDK--MRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGV 269

Query: 146 KPDNFTFTSVLSALALI--VEEEKQCMQMHCTVVKSGTGLFTSVL-NALISVYVKCVSSP 202
           +PD +     LSA   +  ++  +Q ++M    V     L   VL  ALI +Y KC S+ 
Sbjct: 270 RPDCYAVAGALSACTRLGALDLGRQAIRM----VDWDEFLDNPVLGTALIDMYAKCGST- 324

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTM-----MTGYVKNDYLDAAREFLDGMSENVGV 257
                     A  VF +M ++D + W  M     MTG+ K  +       L G  E  GV
Sbjct: 325 --------AEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFT------LIGQMEKSGV 370

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ-VHAYLLRTEAKPT 316
                                +L++ T+  ++ +C ++GL + G++  H         P 
Sbjct: 371 ---------------------KLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPR 409

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
            E        +V L  + G + EA  + + MP   + +   IL A +    I     L E
Sbjct: 410 IEHY----GCIVDLLSRAGLLQEAHQLIDDMP---MPANAVILGALLGGCKIHRNAELAE 462

Query: 377 AMRER--NLLSWT----VMISGLAQN-GYGEEGLKLFSQMRLEGFK 415
            +  +   L  W     VM+S +  N G  E+  KL   M+ +G +
Sbjct: 463 HVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVE 508


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 264/765 (34%), Positives = 398/765 (52%), Gaps = 104/765 (13%)

Query: 30  TSSLARSVHAHMISSGFKPREHII-NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLI 88
           +S L R+VHAH++ +   P    + N L+++Y K L L  +  L   +  P         
Sbjct: 22  SSLLGRAVHAHILRTHDTPLPSFLCNHLVNMYSK-LDLPNSAQLVLSLTNP--------- 71

Query: 89  AAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPD 148
                                  R  V + ++I+   HN    +A+  F +MRR+ V P+
Sbjct: 72  -----------------------RTVVTWTSLISGCVHNRRFTSALLHFSNMRRECVLPN 108

Query: 149 NFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
           +FTF  V  A A +        Q+H   +K G          ++ V+V C +    S   
Sbjct: 109 DFTFPCVFKASASL-HMPVTGKQLHALALKGGN---------ILDVFVGCSAFDMYSKTG 158

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVAWNALISGYV 267
           L   AR +FDEMP R+  +W   M+  V++   LDA   F                    
Sbjct: 159 LRPEARNMFDEMPHRNLATWNAYMSNAVQDGRCLDAIAAFK------------------- 199

Query: 268 HRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327
               K L +  + +  T+ + ++ACA+     LG+Q+H +++R+  +      + V N L
Sbjct: 200 ----KFLCVDGEPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYRE----DVSVFNGL 251

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWT 387
           +  Y KCG +  +  +F++                + +G              RN++SW 
Sbjct: 252 IDFYGKCGDIVSSELVFSR----------------IGSG-------------RRNVVSWC 282

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447
            +++ L QN   E    +F Q R E  +P D+  +  +++CA LG LE GR +HA  + +
Sbjct: 283 SLLAALVQNHEEERACMVFLQARKE-VEPTDFMISSVLSACAELGGLELGRSVHALALKA 341

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
             + ++  G+AL+ +Y +CG +E A  VF  MP  + V+WNAMI      G+   A+ L+
Sbjct: 342 CVEENIFVGSALVDLYGKCGSIEYAEQVFREMPERNLVTWNAMIGGYAHLGDVDMALSLF 401

Query: 508 EQMLKE--GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLL 565
           ++M     GI    +T ++VLSAC+ AG V+ G + FE+M G YGI PG +HYA  +DLL
Sbjct: 402 QEMTSGSCGIALSYVTLVSVLSACSRAGAVERGLQIFESMRGRYGIEPGAEHYACVVDLL 461

Query: 566 CRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYV 625
            R+G    A + I  +P  P+  +W ALL  C++HG   LG  AAE+LF+L P  +G +V
Sbjct: 462 GRSGLVDRAYEFIKRMPILPTISVWGALLGACKMHGKTKLGKIAAEKLFELDPDDSGNHV 521

Query: 626 LLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYK 685
           + SNM A+ GRW++A  VRK MRD G+KK  G SW+ V N+VHVF   D+ H +   +  
Sbjct: 522 VFSNMLASAGRWEEATIVRKEMRDIGIKKNVGYSWVAVKNRVHVFQAKDSFHEKNSEIQA 581

Query: 686 YLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLK 745
            L +L  EM+K GYVPD    L D+E ++K   +  HSEK+A+AFGL+ LP G  +R+ K
Sbjct: 582 MLAKLRGEMKKAGYVPDANLSLFDLEEEEKASEVWYHSEKIALAFGLITLPRGVPIRITK 641

Query: 746 NLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           NLRIC DCH+A KF+SK+VGREI+VRD  RFH F+DG CSC DYW
Sbjct: 642 NLRICIDCHSAIKFISKIVGREIIVRDNNRFHRFKDGWCSCKDYW 686


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 252/693 (36%), Positives = 390/693 (56%), Gaps = 69/693 (9%)

Query: 103 MFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALI 162
           +FN+   K  D   +N++I   + + +   A+  F  MR+  + P   +F   + A + +
Sbjct: 31  LFNRYVDKT-DVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSL 89

Query: 163 VE--EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEM 220
            +    KQ  Q    V    + +F S  +ALI +Y  C           +  AR+VFDE+
Sbjct: 90  FDIFSGKQTHQ-QAFVFGYQSDIFVS--SALIVMYSTC---------GKLEDARKVFDEI 137

Query: 221 PERDELSWTTMMTGY-VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQ 279
           P+R+ +SWT+M+ GY +  + LDA   F D            L+      +  M      
Sbjct: 138 PKRNIVSWTSMIRGYDLNGNALDAVSLFKD------------LLVDENDDDDAMF----- 180

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK--V 337
           LD     SVISAC+      L + +H++++    K   +  + V N L+  Y K G+  V
Sbjct: 181 LDSMGLVSVISACSRVPAKGLTESIHSFVI----KRGFDRGVSVGNTLLDAYAKGGEGGV 236

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNG 397
             AR IF+Q+ ++D VS+N+I+S Y  +G+ +EA  +F  + +  ++++  +        
Sbjct: 237 AVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAI-------- 288

Query: 398 YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN 457
                                   +  + + +  GAL  G+ +H Q++  G +  +  G 
Sbjct: 289 ----------------------TLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGT 326

Query: 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
           ++I MY +CG VE A   F+ M N +  SW AMIA  G HG+ A+A+EL+  M+  G+ P
Sbjct: 327 SIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRP 386

Query: 518 DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577
           + ITF++VL+AC+HAGL  EG R+F  M G +G+ PG +HY   +DLL RAG   +A D+
Sbjct: 387 NYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDL 446

Query: 578 IDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRW 637
           I  +  KP + IW +LLA CRIH N++L   +  +LF+L   + G Y+LLS++YA+ GRW
Sbjct: 447 IQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRW 506

Query: 638 DDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKL 697
            D  RVR +M++RG+ K PG S +E++ +VHVFL+ D  HP+ + +Y++L +L  ++ + 
Sbjct: 507 KDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEA 566

Query: 698 GYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAF 757
           GYV +T  V HD++ ++KE  L  HSEKLA+AFG+M    G+TV V+KNLR+C DCHN  
Sbjct: 567 GYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVI 626

Query: 758 KFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           K +SK+V RE VVRD KRFHHF+DG CSCGDYW
Sbjct: 627 KLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/438 (24%), Positives = 193/438 (44%), Gaps = 76/438 (17%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           Q DI   + LI  YS    ++ AR++F++ P   R+ V + +MI  Y  N N   A+ LF
Sbjct: 108 QSDIFVSSALIVMYSTCGKLEDARKVFDEIP--KRNIVSWTSMIRGYDLNGNALDAVSLF 165

Query: 138 RDMRRDDVKPDNFTFTSVLSALALI-----VEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           +D+  D+   D+  F   +  +++I     V  +     +H  V+K G     SV N L+
Sbjct: 166 KDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLL 225

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
             Y K            +  AR++FD++ ++D +S+ ++M+ Y ++   + A E    + 
Sbjct: 226 DAYAK-------GGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLV 278

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
           +N  V +NA+                     T ++V+ A ++SG  R+GK +H  ++R  
Sbjct: 279 KNKVVTFNAI---------------------TLSTVLLAVSHSGALRIGKCIHDQVIRM- 316

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
                E  + V  +++ +Y KCG+V  AR  F++M  +++ SW A+              
Sbjct: 317 ---GLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAM-------------- 359

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
                            I+G   +G+  + L+LF  M   G +P    F   + +C+  G
Sbjct: 360 -----------------IAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAG 402

Query: 433 A-LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAM 490
             +E  R  +A     G +  L     ++ +  R G ++ A  +   M    DS+ W+++
Sbjct: 403 LHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSL 462

Query: 491 IAALGQHGNGARAIELYE 508
           +AA   H N    +EL E
Sbjct: 463 LAACRIHKN----VELAE 476



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 101/424 (23%), Positives = 196/424 (46%), Gaps = 61/424 (14%)

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
           S ++L  +  R+       +  + TT+   YV    + +    +  ++ + G +  AL++
Sbjct: 5   SKKALFCSVSRLLHTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARS-GDSAEALLA 63

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRL--GKQVH--AYLLRTEAKPTPEFS 320
               R+L +   R      ++   I AC  S LF +  GKQ H  A++   ++       
Sbjct: 64  FSSMRKLSLYPTRS-----SFPCAIKAC--SSLFDIFSGKQTHQQAFVFGYQS------D 110

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           + V++AL+ +Y  CGK+ +AR +F+++P+R++VSW +++  Y   G   +A SLF+ +  
Sbjct: 111 IFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDL-- 168

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
                       L      ++ + L S                 I++C+ + A      +
Sbjct: 169 ------------LVDENDDDDAMFLDSM-----------GLVSVISACSRVPAKGLTESI 205

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGV--VEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           H+ ++  G+D  +S GN L+  YA+ G   V  A  +F+ + + D VS+N++++   Q G
Sbjct: 206 HSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSG 265

Query: 499 NGARAIELYEQMLKEGILP-DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
               A E++ +++K  ++  + IT  TVL A +H+G ++ G+     +H        ED 
Sbjct: 266 MSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGK----CIHDQVIRMGLEDD 321

Query: 558 Y---ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
                  ID+ C+ G+   A+   D +  K +   W A++AG  +HG+       A +  
Sbjct: 322 VIVGTSIIDMYCKCGRVETARKAFDRMKNK-NVRSWTAMIAGYGMHGH-------AAKAL 373

Query: 615 QLMP 618
           +L P
Sbjct: 374 ELFP 377



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 139/337 (41%), Gaps = 80/337 (23%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLK--LVYARTLFDEIPQPDIVARTTLIAA 90
           L  S+H+ +I  GF     + N L+D Y K  +  +  AR +FD+I   D V+       
Sbjct: 201 LTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVS------- 253

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
                                     YN++++ Y+ +   + A E+FR +    VK    
Sbjct: 254 --------------------------YNSIMSVYAQSGMSNEAFEVFRRL----VKNKVV 283

Query: 151 TFTSVLSALALIVEEEKQCMQ----MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           TF ++  +  L+       ++    +H  V++ G      V  ++I +Y KC        
Sbjct: 284 TFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKC-------- 335

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              +  AR+ FD M  ++  SWT M+ GY  + +   A E    M ++ GV  N +    
Sbjct: 336 -GRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDS-GVRPNYI---- 389

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG-KQVHAYLLRTEAKPTPEFSLPVNN 325
                            T+ SV++AC+++GL   G +  +A   R   +P  E       
Sbjct: 390 -----------------TFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHY----G 428

Query: 326 ALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
            +V L  + G + +A D+  +M  + D + W+++L+A
Sbjct: 429 CMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAA 465


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 271/790 (34%), Positives = 400/790 (50%), Gaps = 105/790 (13%)

Query: 27  NPITSSLARSVHAHMISSGFKPREHIINR--LIDIYCKSL-------------KLVYART 71
           N  TS  ++   A M+      REH + +  L  + C +L             + ++A  
Sbjct: 26  NSFTSHFSQGDVAQMVERSLSMREHPLQQYPLTSLQCGALLQSFTNTKSFKQGQQLHAHM 85

Query: 72  LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           +   I + +    T L A Y+    +  A  +F+   LK  ++  +N MI  Y+ N    
Sbjct: 86  ISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLK--NSFLWNFMIRGYASNGLPM 143

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALA--LIVEEEKQCMQMHCTVVKSGTGLFTSVLN 189
            ++ L+R+M     + DNFT+  VL A    L+VE  ++   +H  VV  G      V N
Sbjct: 144 KSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRR---VHSEVVVCGLESDIYVGN 200

Query: 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD 249
           +L+++Y K            MG AR VFD M ERD  S                      
Sbjct: 201 SLLAMYAKFGD---------MGTARMVFDRMAERDLTS---------------------- 229

Query: 250 GMSENVGVAWNALISGYVHRE-------LKMLMLRIQL--DEFTYTSVISACANSGLFRL 300
                    WN +ISGY           +  LM +  L  D  T   ++SACA+    + 
Sbjct: 230 ---------WNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKE 280

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           GK +H Y +R       +F     N+L+ +Y  C  + +AR                   
Sbjct: 281 GKVIHGYAVRNSIGNYNKF---FTNSLIEMYCNCNCMVDAR------------------- 318

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
                        LFE +R ++ +SW  MI G A+NG   E L+LF +M L+G  P    
Sbjct: 319 ------------RLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVT 366

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
           F   + +C  + AL  G  +H+ LV  G+D++   G AL+ MY++CG +  +  VF+ MP
Sbjct: 367 FIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMP 426

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
           +   VSW+AM+A  G HG G  AI + + M    ++PD   F ++LSAC+HAGLV EG+ 
Sbjct: 427 DKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKE 486

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
            F  M   Y + P   HY+  +DLL RAG   EA  +I ++  KP++ IW ALL   R+H
Sbjct: 487 IFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLH 546

Query: 601 GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSW 660
            NI L   +A+++F + P    +Y+ LSN+YA   RWDD  RVR ++R +G+KK PGCS+
Sbjct: 547 KNIKLAEISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSF 606

Query: 661 IEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALS 720
           IE+DN VH FLV D +H + + +Y  L +L  ++++ GY PDT  V +D+E + KE  L 
Sbjct: 607 IELDNMVHRFLVGDKSHQQTEDIYAKLNELKQQLKEAGYKPDTSLVFYDVEEEVKEKMLW 666

Query: 721 THSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFR 780
            HSE+LA+AF L+    G  +R+ KNLR+CGDCH   K +S++ GREI++RD  RFHHF 
Sbjct: 667 DHSERLAIAFALINTGPGTVIRITKNLRVCGDCHTVTKLISELTGREIIMRDIHRFHHFI 726

Query: 781 DGKCSCGDYW 790
            G CSCGDYW
Sbjct: 727 KGFCSCGDYW 736


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 284/794 (35%), Positives = 403/794 (50%), Gaps = 123/794 (15%)

Query: 11  TLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPRE-HIINRLIDIYCKSLKLVYA 69
           +L + Y   LQ C     +     + +H+ + + GF     H + RLI +Y K   L  A
Sbjct: 23  SLHHFYDHLLQCCTSLTTL-----KLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSA 77

Query: 70  RTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSN 129
           RTLFD                               + P    ++   N M+ AY++   
Sbjct: 78  RTLFDH---------------------RHHHHHGHTQAP----NSFLCNTMLRAYANAGR 112

Query: 130 GHAAIELFRDMRRDDVKPDNFTFTSVL----SALALIVEEEKQCMQMHCTVVKSGTGLFT 185
            + AI+L+  M+R  V  +NFT+  VL    S L  +  E      +H  VV++G G   
Sbjct: 113 SYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGE-----VVHGQVVRTGFGSDL 167

Query: 186 SVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245
            V  AL+ +Y KC           +G A  VFD M  RD + WT M+T Y + +      
Sbjct: 168 FVEAALVDMYAKC---------GEIGDAHEVFDRMLIRDVVCWTAMITLYEQAE------ 212

Query: 246 EFLDGMSENVGVAWNALISGYVHRELKMLMLRIQL-------DEFTYTSVISACANSGLF 298
                                  R LK LML  ++       DE T  SV SA    G  
Sbjct: 213 -----------------------RPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDG 249

Query: 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAI 358
           R+   VH Y +           + V N++V +Y KCG                       
Sbjct: 250 RMAISVHGYAVLNGFIG----DVSVGNSIVGMYAKCGN---------------------- 283

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
                    ++ A+ +F+ M ERN +SW  M+SG  QNG   + L LF+QM+     P  
Sbjct: 284 ---------VERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNP 334

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478
                 +++C+ LG+   GR+LH  ++ S  D   +  NA++ MY +CG ++ A  +FN 
Sbjct: 335 VTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNN 394

Query: 479 --MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536
             +   D  SWN +I+  G HG+G  A+EL+ +M  EG+ P+ ITF ++LSAC+HAGL+ 
Sbjct: 395 CELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLID 454

Query: 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           EGR+ F  M     + P   HYA  +D+L RAG  +EA  +I  +P +PS  +W ALL  
Sbjct: 455 EGRKCFADM-TKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLA 513

Query: 597 CRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEP 656
           CRIHGN +LG  AA  LFQL P H G YVL+SN+YA   +W +   VR+ M+ RG+KK  
Sbjct: 514 CRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPA 573

Query: 657 GCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKE 716
             S IE   +VH F   D + P  + VY+ +E L +EM+ +GYVPD   VLHD+E + KE
Sbjct: 574 AFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPEDKE 633

Query: 717 YALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRF 776
           + L+ HSEKLAVAFG+MK+  G  ++V KNLR+C DCH AFKF+S + GR+I+VRDG RF
Sbjct: 634 HLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRF 693

Query: 777 HHFRDGKCSCGDYW 790
           HHF+ G+CSCGDYW
Sbjct: 694 HHFQGGRCSCGDYW 707


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 249/714 (34%), Positives = 389/714 (54%), Gaps = 56/714 (7%)

Query: 96  NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV 155
           ++   R +FN   ++  +   +N MI AY   ++ H A  L++ M  + +  DN+T+  +
Sbjct: 27  HIDYTRRIFN--FIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLL 84

Query: 156 LSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARR 215
           + A + I   E +  Q+H  V+K G      V N LI+ +  C         S M  A R
Sbjct: 85  IQACS-IRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVC---------SNMTDACR 134

Query: 216 VFDEMPERDELSWTTMMTGYVKNDYLDAAR------------------------------ 245
           VF+E    D +SW +++ GY++   ++ A+                              
Sbjct: 135 VFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEA 194

Query: 246 -EFLDGMSENVGVAWNALISGYVHRELKMLMLR---------IQLDEFTYTSVISACANS 295
            +  D M E   V W+ALI+ +   E+    +R         + +DE    S +SACAN 
Sbjct: 195 CKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANL 254

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
            +  +GK +H+  L    K   E  + + NAL+ +Y KCG +  AR +F++    DL+SW
Sbjct: 255 LVVNMGKLIHSLSL----KIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISW 310

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           N+++S Y+   L+D AK++F++M E++++SW+ MISG AQN   +E L LF +M++ GFK
Sbjct: 311 NSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFK 370

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P +      I++CA L ALE G+ +HA +  +G   ++  G  LI MY +CG VE A  V
Sbjct: 371 PDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEV 430

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           F  M      +WNA+I  L  +G    +++++  M K  + P+ ITF+ VL AC H GLV
Sbjct: 431 FYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLV 490

Query: 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
            EG+ +F +M   + I P   HY   +DLL RAGK  EA+++++ +P  P    W ALL 
Sbjct: 491 DEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLG 550

Query: 596 GCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKE 655
            C+ HG+ ++G +   +L +L P H G +VLLSN+YA+ G+WDD   +R +M    V K 
Sbjct: 551 ACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKI 610

Query: 656 PGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQK 715
           PGCS IE +  +H FL  D  HP+  A+   L ++ ++++  GY PD   VL D++ ++K
Sbjct: 611 PGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEK 670

Query: 716 EYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIV 769
           E  L  HSEKLA+AFGL+ +     +R++KNLRIC DCH A K +SK   R+IV
Sbjct: 671 ESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKLISKAFCRKIV 724



 Score =  183 bits (464), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 146/564 (25%), Positives = 246/564 (43%), Gaps = 93/564 (16%)

Query: 6   ADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLK 65
           ++Y+      Y   +Q C  R   +   A+ VH H++  GF    ++ N LI+ +     
Sbjct: 71  SNYLGADNYTYPLLIQACSIRR--SEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSN 128

Query: 66  LVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTP----------------- 108
           +  A  +F+E    D V+  +++A Y    NV+ A+ ++++ P                 
Sbjct: 129 MTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMR 188

Query: 109 ------------LKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
                       +  +D V ++A+I  +  N     AI  F  M +  V  D     S L
Sbjct: 189 GLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSAL 248

Query: 157 SALA--LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           SA A  L+V   K    +H   +K GT  + ++ NALI +Y KC           +  AR
Sbjct: 249 SACANLLVVNMGK---LIHSLSLKIGTESYINLQNALIYMYSKCGD---------IMVAR 296

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL--- 271
           ++FDE    D +SW +M++GY+K + +D A+   D M E   V+W+++ISGY   +L   
Sbjct: 297 KLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDE 356

Query: 272 ------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
                 +M M   + DE T  SVISACA       GK VHAY+ R         ++ +  
Sbjct: 357 TLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLT----INVILGT 412

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
            L+ +Y KCG V  A ++F  M E+ + +WNA+                           
Sbjct: 413 TLIDMYMKCGCVETALEVFYGMIEKGISTWNAL--------------------------- 445

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
               I GLA NG  E  L +FS M+     P +  F G + +C  +G ++ G+     ++
Sbjct: 446 ----ILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMI 501

Query: 446 HS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV-DSVSWNAMIAALGQHGNGARA 503
           H      ++     ++ +  R G ++ A  + N MP   D  +W A++ A  +HG+    
Sbjct: 502 HDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMG 561

Query: 504 IELYEQMLKEGILPDRITFLTVLS 527
             +  ++++  + PD   F  +LS
Sbjct: 562 RRVGRKLIE--LQPDHDGFHVLLS 583


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/553 (41%), Positives = 330/553 (59%), Gaps = 18/553 (3%)

Query: 248 LDGMSENVGVA-WNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGL 297
           L G ++N  V  W A+I G+  R L         +ML   ++ + FT++S++  C     
Sbjct: 84  LFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP---- 139

Query: 298 FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA 357
              GK +H+       K   +  L V   L+ +Y + G V  A+ +F+ MPE+ LVS  A
Sbjct: 140 IEPGKALHS----QAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTA 195

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
           +L+ Y   G +D A+ LF+ M ER+ + W VMI G  QNG   E L LF +M     KP 
Sbjct: 196 MLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPN 255

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
           +      +++C  LGALE+GR +H+ + ++G   ++  G AL+ MY++CG +E A  VF+
Sbjct: 256 EVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFD 315

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKE 537
            + + D V+WN+MI     HG    A++L++ M + G+ P  ITF+ +LSAC H+G V E
Sbjct: 316 KIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTE 375

Query: 538 GRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
           G   F  M   YGI P  +HY   ++LL RAG   +A +++ ++  +P   +W  LL  C
Sbjct: 376 GWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGAC 435

Query: 598 RIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPG 657
           R+HG I LG +  E L      ++GTY+LLSN+YA +G WD  AR+R +M+D GVKKEPG
Sbjct: 436 RLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPG 495

Query: 658 CSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEY 717
           CS IEV+NKVH FL     HP+ + +Y  LE++   ++  GY P T  VLHD+   +KE 
Sbjct: 496 CSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKER 555

Query: 718 ALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFH 777
           +L  HSEKLA+AFGL+    G T++++KNLR+C DCH   K +SK+ GR+IVVRD  RFH
Sbjct: 556 SLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFH 615

Query: 778 HFRDGKCSCGDYW 790
           HF +G CSCGDYW
Sbjct: 616 HFVNGSCSCGDYW 628



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 195/437 (44%), Gaps = 62/437 (14%)

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
           +Y++   +  +  +F +T  +     F+ A+I  ++       A+  +  M    V+P+ 
Sbjct: 71  SYASLGRLDYSVALFGRT--QNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNA 128

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           FTF+S+L      +E  K    +H   VK G      V   L+ VY +      VS    
Sbjct: 129 FTFSSILKLCP--IEPGKA---LHSQAVKLGFDSDLYVRTGLLDVYAR--GGDVVS---- 177

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
              A+++FD MPE+  +S T M+T Y K+  LDAAR   DGM E  GV WN +I GY   
Sbjct: 178 ---AQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQN 234

Query: 270 EL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
            +         +ML  + + +E T  SV+SAC   G    G+ VH+Y+         +F+
Sbjct: 235 GMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGI----QFN 290

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           + V  ALV +Y KCG + +AR +F+++ ++D+V+WN+++  Y   G              
Sbjct: 291 VHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHG-------------- 336

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
                            + +E L+LF  M   G  P +  F G +++C   G +  G  +
Sbjct: 337 -----------------FSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDI 379

Query: 441 HAQLVHS-GYDSSLSAGNALITMYARCGVVEAA-NCVFNTMPNVDSVSWNAMIAALGQHG 498
             ++    G +  +     ++ +  R G VE A   V N     D V W  ++ A   HG
Sbjct: 380 FNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHG 439

Query: 499 NGARAIELYEQMLKEGI 515
             A   ++ E ++ + +
Sbjct: 440 KIALGEKIVELLVDQNL 456



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 167/372 (44%), Gaps = 44/372 (11%)

Query: 13  ANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTL 72
           A  ++S L+LC P  P      +++H+  +  GF    ++   L+D+Y +   +V A+ L
Sbjct: 128 AFTFSSILKLC-PIEP-----GKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQL 181

Query: 73  FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
           FD +P+  +V+ T ++  Y+    +  AR +F+   ++ RD V +N MI  Y+ N   + 
Sbjct: 182 FDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDG--MEERDGVCWNVMIDGYTQNGMPNE 239

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           A+ LFR M +   KP+  T  SVLSA   +   E     +H  +  +G      V  AL+
Sbjct: 240 ALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQFNVHVGTALV 298

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
            +Y KC S         +  AR VFD++ ++D ++W +M+ GY  + +   A +    M 
Sbjct: 299 DMYSKCGS---------LEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMC 349

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
                                  + +     T+  ++SAC +SG    G  +    ++ E
Sbjct: 350 R----------------------MGLHPTNITFIGILSACGHSGWVTEGWDIFNK-MKDE 386

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEA 371
               P+  +     +V L  + G V +A ++   M  E D V W  +L A    G I   
Sbjct: 387 YGIEPK--IEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALG 444

Query: 372 KSLFEAMRERNL 383
           + + E + ++NL
Sbjct: 445 EKIVELLVDQNL 456



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 131/291 (45%), Gaps = 47/291 (16%)

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
           +Y S G +D + +LF   +  ++  WT +I G A  G  E+ L  ++QM  +G +P  + 
Sbjct: 71  SYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFT 130

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
           F+  +  C     +E G+ LH+Q V  G+DS L     L+ +YAR G V +A  +F+TMP
Sbjct: 131 FSSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMP 186

Query: 481 NV-------------------------------DSVSWNAMIAALGQHGNGARAIELYEQ 509
                                            D V WN MI    Q+G    A+ L+ +
Sbjct: 187 EKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRR 246

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGR---RYFETMHGPYGIPPGEDHYARFIDLLC 566
           MLK    P+ +T L+VLSAC   G ++ GR    Y E     + +  G       +D+  
Sbjct: 247 MLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVG----TALVDMYS 302

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           + G   +A+ V D +  K     W +++ G  +HG      Q A QLF+ M
Sbjct: 303 KCGSLEDARLVFDKIDDKDVVA-WNSMIVGYAMHGF----SQEALQLFKSM 348



 Score = 56.6 bits (135), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 78/194 (40%), Gaps = 28/194 (14%)

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           Q+HA L   G D        L   YA  G ++ +  +F    N     W A+I      G
Sbjct: 48  QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACN-------HAGLVKEGRRYFETMHGPYGI 551
              +A+  Y QML +G+ P+  TF ++L  C        H+  VK G   F++       
Sbjct: 108 LHEQALNFYAQMLTQGVEPNAFTFSSILKLCPIEPGKALHSQAVKLG---FDS------- 157

Query: 552 PPGEDHYAR--FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609
               D Y R   +D+  R G    A+ + D++P K    +  A+L     HG +D    A
Sbjct: 158 ----DLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSL-TAMLTCYAKHGELD----A 208

Query: 610 AEQLFQLMPHHAGT 623
           A  LF  M    G 
Sbjct: 209 ARVLFDGMEERDGV 222


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/670 (35%), Positives = 376/670 (56%), Gaps = 68/670 (10%)

Query: 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLD 242
            F S+    I  +   VS  F  +  L   AR++FDEMPER+ +SW  +++GY+KN  ++
Sbjct: 39  FFDSLRYKAIGSWNSIVSGYF--ANGLPREARQMFDEMPERNIVSWNGLVSGYIKNRMIE 96

Query: 243 AAREFLDGMSENVGVAWNALISGYVHR----ELKMLMLRI-QLDEFTYTSV--------- 288
            AR   + M E   V+W A++ GYV      E ++L  R+ + +E ++T +         
Sbjct: 97  EARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPERNEVSWTVMFGGLIDGGR 156

Query: 289 ---------------ISACAN--SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                          + A  N   GL R G+   A  +  E +   E ++     ++T Y
Sbjct: 157 IDDARKLYDMMPGKDVVASTNMIGGLCREGRVDEAREIFDEMR---ERNVITWTTMITGY 213

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM------------- 378
            +  +V+ AR +F  MPE+  VSW ++L  Y  +G I++A+  FE M             
Sbjct: 214 GQNKRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIV 273

Query: 379 ------------------RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
                              +R+  +W  MI    + G+  E L+LF+QM+ +G +P   +
Sbjct: 274 ALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPS 333

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
               ++ CA L +L+ GRQ+HA LV   +D  +   + L+TMY +CG +  A  VF+  P
Sbjct: 334 LISILSVCATLASLQYGRQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFP 393

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
           + D + WN++I+    HG G  A++++ +M   G +P+++T + +L+AC++ G ++EG  
Sbjct: 394 SKDIIMWNSIISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLE 453

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
            FE+M   + + P  +HY+  +D+L RAGK  +A ++I+S+  KP A +W ALL  C+ H
Sbjct: 454 IFESMESKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGACKTH 513

Query: 601 GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSW 660
             +DL   AA++LF++ P +AG Y+LLS++ A+  +W D A +RK MR + V K PGCSW
Sbjct: 514 SRLDLAEVAAKKLFEIEPENAGPYILLSSINASRSKWGDVAEMRKNMRTKNVSKFPGCSW 573

Query: 661 IEVDNKVHVFLVDDTA-HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYAL 719
           IEV  KVH+F       HPE   +   LE+    +R+ GY PD   VLHD++ ++K  +L
Sbjct: 574 IEVGKKVHMFTRGGIRNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSL 633

Query: 720 STHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHF 779
           S HSE+LAVA+GL+KLP G  +RV+KNLR+CGDCH A K +SKV  REI++RD  RFHHF
Sbjct: 634 SRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHF 693

Query: 780 RDGKCSCGDY 789
            +G+CSC DY
Sbjct: 694 NNGECSCRDY 703



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 108/446 (24%), Positives = 188/446 (42%), Gaps = 114/446 (25%)

Query: 56  LIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTV 115
           +I   C+  ++  AR +FDE+ + +++  TT+I  Y  +  V +AR++F   P K    V
Sbjct: 178 MIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVMPEKTE--V 235

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
            + +M+  Y+ +     A E F  M    +KP       V++  A+IV            
Sbjct: 236 SWTSMLLGYTLSGRIEDAEEFFEVM---PMKP-------VIACNAMIV------------ 273

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
                 G    ++ A                       RRVFD+M +RD  +W  M+  Y
Sbjct: 274 ----ALGEVGEIVKA-----------------------RRVFDQMEDRDNATWRGMIKAY 306

Query: 236 VKNDY-LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACAN 294
            +  + L+A   F     + V  ++ +LI                       S++S CA 
Sbjct: 307 ERKGFELEALELFAQMQRQGVRPSFPSLI-----------------------SILSVCAT 343

Query: 295 SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS 354
               + G+QVHA+L+R +     +  + V + L+T+Y KCG++ +A+ +F++ P +D++ 
Sbjct: 344 LASLQYGRQVHAHLVRCQF----DGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIM 399

Query: 355 WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF 414
           WN+I+S Y S GL                               GEE LK+F +M L G 
Sbjct: 400 WNSIISGYASHGL-------------------------------GEEALKVFHEMPLSGT 428

Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY--DSSLSAGNALITMYARCGVVEAA 472
            P        +T+C+  G LE G ++   +  S +    ++   +  + M  R G V+ A
Sbjct: 429 MPNKVTLIAILTACSYGGKLEEGLEIFESM-ESKFCVTPTVEHYSCTVDMLGRAGKVDKA 487

Query: 473 NCVFNTMP-NVDSVSWNAMIAALGQH 497
             + N+M    D+  W A++ A   H
Sbjct: 488 MELINSMTIKPDATVWGALLGACKTH 513



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 149/355 (41%), Gaps = 69/355 (19%)

Query: 56  LIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKM---- 111
           +I  Y ++ ++  AR LF+ +P+   V+ T+++  Y+ S  ++ A E F   P+K     
Sbjct: 209 MITGYGQNKRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIAC 268

Query: 112 -------------------------RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
                                    RD   +  MI AY        A+ELF  M+R  V+
Sbjct: 269 NAMIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVR 328

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           P   +  S+LS  A +   +    Q+H  +V+        V + L+++YVKC        
Sbjct: 329 PSFPSLISILSVCATLASLQ-YGRQVHAHLVRCQFDGDVYVASVLMTMYVKC-------- 379

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              +  A+ VFD  P +D + W ++++GY  +   + A +    M           +SG 
Sbjct: 380 -GELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKVFHEMP----------LSGT 428

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
           +             ++ T  ++++AC+  G    G ++   +   E+K     ++   + 
Sbjct: 429 MP------------NKVTLIAILTACSYGGKLEEGLEIFESM---ESKFCVTPTVEHYSC 473

Query: 327 LVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSAYVSAGLID----EAKSLFE 376
            V +  + GKV++A ++ N M  + D   W A+L A  +   +D     AK LFE
Sbjct: 474 TVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFE 528



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 2/109 (1%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R VHAH++   F    ++ + L+ +Y K  +LV A+ +FD  P  DI+   ++I+ Y++
Sbjct: 350 GRQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYAS 409

Query: 94  SDNVKLAREMFNKTPLK--MRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
               + A ++F++ PL   M + V   A++TA S+       +E+F  M
Sbjct: 410 HGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIFESM 458


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/593 (38%), Positives = 345/593 (58%), Gaps = 51/593 (8%)

Query: 244 AREFLDGMSENVGVAWNALISGYVHREL---KMLMLRIQL------DEFTYTSVISACAN 294
            R   D +++   V +N +I  YV+  L    +L+ +         D +TY  V+ AC+ 
Sbjct: 90  TRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSV 149

Query: 295 SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS 354
           SG   +G Q+H  +++       + +L + N LV++Y KC  ++ AR + ++MP RD+VS
Sbjct: 150 SGNLWVGLQIHGAVVKLGL----DMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVS 205

Query: 355 WNAILSAYVSAGLIDEA-------------------------------------KSLFEA 377
           WN++++ Y   G  ++A                                     K +F  
Sbjct: 206 WNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVK 265

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
           ++E++L+SW VMI+    N    E + L+ QM++ G +P   + +  + +C  L A   G
Sbjct: 266 LKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLG 325

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           R++H  +       +L   NALI MYA+CG ++ A  VF+ M   D VSW +MI+A G  
Sbjct: 326 RRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMS 385

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
           G G  A+ L+++M   G  PD I F++VL+AC+HAGLV EGR  F  M   YGI PG +H
Sbjct: 386 GQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFNLM-AEYGITPGIEH 444

Query: 558 YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           Y   +DLL RAGK  EA  +   +P +P+  +W +LL+ CR++ ++++ + AA+ LFQL 
Sbjct: 445 YNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQLA 504

Query: 618 PHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAH 677
           P  +G YVLLSN+YA  GRW D   VR +M  +G+KK PG S +E+++ V+ FL  D +H
Sbjct: 505 PEQSGYYVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSH 564

Query: 678 PEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPG 737
            +++ +YK L  LV  M++LGY+P+T   LHD+E + KE  L+ HSEKLA+ F ++    
Sbjct: 565 TQSKEIYKALGVLVGRMKELGYMPETDSALHDVEEEDKECHLAVHSEKLAIVFAILNTKP 624

Query: 738 GATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           G+T+R+ KN+R+CGDCH A K +SK+  REI++RD  RFHHFRDG CSCGDYW
Sbjct: 625 GSTIRITKNIRVCGDCHVATKLISKIAEREIIIRDTHRFHHFRDGVCSCGDYW 677



 Score =  180 bits (457), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 131/493 (26%), Positives = 226/493 (45%), Gaps = 96/493 (19%)

Query: 50  EHIINRLIDIY--CKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKT 107
           E + N+++D+    K+LK ++++ L D+   P+      L+ AY+A       R +F++ 
Sbjct: 38  EDLCNKILDVNPDAKTLKKLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDE- 96

Query: 108 PLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEK 167
            +  ++ VF+N MI +Y +N     A+ +F+ M      PDN+T+  VL A + +     
Sbjct: 97  -ITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACS-VSGNLW 154

Query: 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS 227
             +Q+H  VVK G  +   + N L+S+Y KC           + AARRV DEMP RD +S
Sbjct: 155 VGLQIHGAVVKLGLDMNLYIGNGLVSMYGKC---------KWLDAARRVLDEMPGRDMVS 205

Query: 228 WTTMMTGYVK----NDYLDAAREFLD---------------------------------G 250
           W +M+ GY +    ND L   RE  D                                  
Sbjct: 206 WNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVK 265

Query: 251 MSENVGVAWNALISGYVHRE---------LKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
           + E   ++WN +I+ YV+           L+M +  ++ D  + +SV+ AC +     LG
Sbjct: 266 LKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLG 325

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
           +++H Y+ R + +P    +L + NAL+ +Y KCG + EAR +F+QM  RD+VSW +++SA
Sbjct: 326 RRIHEYVERKKLRP----NLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISA 381

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
           Y  +G   +A +LF+ MR+                                GF P   AF
Sbjct: 382 YGMSGQGKDAVALFKKMRD-------------------------------SGFTPDWIAF 410

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP- 480
              + +C+  G ++ GR     +   G    +   N ++ +  R G ++ A  +   MP 
Sbjct: 411 VSVLAACSHAGLVDEGRYCFNLMAEYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPM 470

Query: 481 NVDSVSWNAMIAA 493
             +   W ++++A
Sbjct: 471 EPNERVWGSLLSA 483



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 125/256 (48%), Gaps = 21/256 (8%)

Query: 298 FRLGKQVHAYLLRTEAKP--TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
           F   KQ   + L T+ KP  +P+F+    +    L  K   VN       ++  + L+  
Sbjct: 11  FSTAKQTKPFSLTTQ-KPQLSPKFTALTED----LCNKILDVNPDAKTLKKLHSKILIDQ 65

Query: 356 N---------AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
           N          ++ AY + G     + +F+ + ++N++ + VMI     NG  ++ L +F
Sbjct: 66  NLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVF 125

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
             M  +GF P +Y +   + +C+  G L  G Q+H  +V  G D +L  GN L++MY +C
Sbjct: 126 KTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKC 185

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
             ++AA  V + MP  D VSWN+M+A   Q+G    A++L  +M    + PD  T  ++L
Sbjct: 186 KWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLL 245

Query: 527 SA-----CNHAGLVKE 537
            A     C++   VK+
Sbjct: 246 PAVTNTSCDNVLYVKD 261



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 114/457 (24%), Positives = 196/457 (42%), Gaps = 93/457 (20%)

Query: 10  RTLANR--------YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYC 61
           +T+AN+        Y   L+ C     +   L   +H  ++  G     +I N L+ +Y 
Sbjct: 126 KTMANQGFYPDNYTYPCVLKACSVSGNLWVGL--QIHGAVVKLGLDMNLYIGNGLVSMYG 183

Query: 62  KSLKLVYARTLFDEIPQPDIVARTTLIAAY------------------------------ 91
           K   L  AR + DE+P  D+V+  +++A Y                              
Sbjct: 184 KCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGS 243

Query: 92  -------SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
                  ++ DNV   ++MF K  LK +  + +N MI  Y +N+  + A++L+  M+   
Sbjct: 244 LLPAVTNTSCDNVLYVKDMFVK--LKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHG 301

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           V+PD  + +SVL A   +        ++H  V +        + NALI +Y KC      
Sbjct: 302 VEPDAVSISSVLPACGDL-SAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKC------ 354

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                +  AR VFD+M  RD +SWT+M++ Y  +     A      M +          S
Sbjct: 355 ---GCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRD----------S 401

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
           G+              D   + SV++AC+++GL   G+  + + L  E   TP   +   
Sbjct: 402 GFTP------------DWIAFVSVLAACSHAGLVDEGR--YCFNLMAEYGITP--GIEHY 445

Query: 325 NALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA---YVSAGL-IDEAKSLFEAMR 379
           N +V L  + GK++EA  +  QMP E +   W ++LSA   Y S  + +  A  LF+   
Sbjct: 446 NCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAP 505

Query: 380 ERNLLSWTVMISGL-AQNGYGEEGLKLFSQMRLEGFK 415
           E++   + V++S + A+ G  ++   + S M  +G K
Sbjct: 506 EQS--GYYVLLSNIYAKAGRWQDVETVRSIMNSKGIK 540



 Score = 47.0 bits (110), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 45/225 (20%)

Query: 438 RQLHAQ-LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           ++LH++ L+      + S G  L+  YA CG       +F+ + + + V +N MI +   
Sbjct: 55  KKLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVN 114

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
           +G    A+ +++ M  +G  PD  T+  VL AC+ +G +  G +    +HG   +  G D
Sbjct: 115 NGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQ----IHGAV-VKLGLD 169

Query: 557 HYAR----FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
                    + +  +      A+ V+D +P +     W +++AG                
Sbjct: 170 MNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVS-WNSMVAG---------------- 212

Query: 613 LFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPG 657
                             YA  GR++DA ++ + M D  +K + G
Sbjct: 213 ------------------YAQNGRFNDALKLCREMEDLKLKPDAG 239


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 270/778 (34%), Positives = 397/778 (51%), Gaps = 113/778 (14%)

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA--IELFRDMRRDDVKPDNF 150
           AS ++  A  +F++ P    D   YN +I AYS +S   AA  + L+R M R  V P+N+
Sbjct: 69  ASGHLSRAHHLFDQIPSP--DVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126

Query: 151 TFTSVLSALALIVEEE-KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           TF   L A + + +    + +  H         LF S   AL+ +YVKC   P       
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVS--TALLDMYVKCACLP------- 177

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
              A  +F  MP RD ++W  M+ GY  +     A   L  M                  
Sbjct: 178 --DAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSM------------------ 217

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF------SLPV 323
             +M M R++ +  T  +++   A  G    G  VHAY +R    P           + +
Sbjct: 218 --QMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLL 275

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
             AL+ +Y KCG +  AR +F+ MP R+ V+W+A++  +V    + +A  LF+AM  + L
Sbjct: 276 GTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGL 335

Query: 384 --LSWTVMISGL--------------------------------------AQNGYGEEGL 403
             LS T + S L                                      A+ G  ++ +
Sbjct: 336 CFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAI 395

Query: 404 KLFSQMRL--------------------EGF-----------KPCDYAFAGAITSCAGLG 432
            LF +M +                    E F           +P        I +C+ L 
Sbjct: 396 ALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLA 455

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
           AL++GR  H  ++  G  S  S  NALI MYA+CG ++ +  VFN MP+ D VSWN MIA
Sbjct: 456 ALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIA 515

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552
             G HG G  A  L+ +M   G  PD +TF+ +LSAC+H+GLV EG+ +F  M   YG+ 
Sbjct: 516 GYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLT 575

Query: 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
           P  +HY   +DLL R G   EA + I S+P +    +W ALL  CR++ NIDLG + +  
Sbjct: 576 PRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRM 635

Query: 613 LFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLV 672
           + +L P   G +VLLSN+Y+  GR+D+AA VR + + +G KK PGCSWIE++  +H F+ 
Sbjct: 636 IQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVG 695

Query: 673 DDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGL 732
            D +HP++  +Y+ L+ +++ ++KLGY PDT FVL D+E ++KE AL  HSEKLA+A+G+
Sbjct: 696 GDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGI 755

Query: 733 MKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           + L    T+ V KNLR+CGDCH   K +S V  R I+VRD  RFHHF++G+CSCGD+W
Sbjct: 756 LSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score = 45.4 bits (106), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 15/111 (13%)

Query: 28  PITSSLA-----RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIV 82
           P  S LA     R  H  +I  G      I N LID+Y K  ++  +R +F+ +P  DIV
Sbjct: 449 PACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIV 508

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMR------DTVFYNAMITAYSHN 127
           +  T+IA Y      K A  +F    L+M       D V +  +++A SH+
Sbjct: 509 SWNTMIAGYGIHGLGKEATALF----LEMNNLGFPPDGVTFICLLSACSHS 555


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 258/789 (32%), Positives = 415/789 (52%), Gaps = 108/789 (13%)

Query: 29  ITSSLARSVH--------AHMISSGFKPREHIINRLIDIYCKSLK------LVYARTLFD 74
           I ++ AR+ H          M+  G +P   +    I + C S K      L++A  L  
Sbjct: 29  IVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGV-CSSSKDLKQGQLLHAMILET 87

Query: 75  EIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAI 134
            + + DI+  T LI  Y+   +++LAR+ F++  +  +  V +NA+I  YS N +   A+
Sbjct: 88  RLLEFDIILGTALITMYARCRDLELARKTFDE--MGKKTLVTWNALIAGYSRNGDHRGAL 145

Query: 135 ELFRDM---RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
           ++++DM     + +KPD  TF+S L A   +V +  Q  ++    V SG    + V NAL
Sbjct: 146 KIYQDMVSKSPEGMKPDAITFSSALYACT-VVGDISQGREIEARTVASGYASDSIVQNAL 204

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           I++Y KC S         + +AR+VFD +  RD                           
Sbjct: 205 INMYSKCGS---------LESARKVFDRLKNRDV-------------------------- 229

Query: 252 SENVGVAWNALISGYVHRELKMLMLRI---------QLDEFTYTSVISACANSGLFRLGK 302
                +AWN +ISGY  +      L +         + +  T+  +++AC N      G+
Sbjct: 230 -----IAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGR 284

Query: 303 QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY 362
            +H    R   +   E  L + N L+ +Y KC                            
Sbjct: 285 AIH----RKVREDGYESDLVIGNVLLNMYTKC---------------------------- 312

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
             +  ++EA+ +FE MR R++++W ++I    Q G  ++ L +F QM+LE   P +   +
Sbjct: 313 --SSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLS 370

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
             +++CA LGA   G+ +HA +      + +   N+L+ MY RCG ++    VF  + + 
Sbjct: 371 NVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDK 430

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
             VSW+ +IAA  QHG+    +E + ++L+EG+  D +T ++ LSAC+H G++KEG + F
Sbjct: 431 SLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTF 490

Query: 543 ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
            +M G +G+ P   H+   +DLL RAG+   A+++I  +PF P A  W +LL+GC++H +
Sbjct: 491 LSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHND 550

Query: 603 IDLGIQAAEQLFQLMPH-HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWI 661
                + A++LF+L       T  LLSN+YA  GRWDD   VRK    R  +K PGCS+I
Sbjct: 551 TKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDD---VRKTRNRRAARKNPGCSYI 607

Query: 662 EVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALST 721
           E+++ VH F+  D +HPE + +   +++L  +M+  GYVPD + VLH+++ ++KE  L  
Sbjct: 608 EINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCY 667

Query: 722 HSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRD 781
           HSEKLA+A+GL+  P G  + ++KNLR C DCH A KF+S++VGR+IVVRD  RFHHF +
Sbjct: 668 HSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFEN 727

Query: 782 GKCSCGDYW 790
           G CSC DYW
Sbjct: 728 GSCSCKDYW 736



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 121/514 (23%), Positives = 223/514 (43%), Gaps = 103/514 (20%)

Query: 1   MMMKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIY 60
           M+ K+ + ++  A  ++S L  C     I  S  R + A  ++SG+     + N LI++Y
Sbjct: 151 MVSKSPEGMKPDAITFSSALYACTVVGDI--SQGREIEARTVASGYASDSIVQNALINMY 208

Query: 61  CKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAM 120
            K   L  AR +FD +   D++A  T+I                                
Sbjct: 209 SKCGSLESARKVFDRLKNRDVIAWNTMI-------------------------------- 236

Query: 121 ITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSG 180
            + Y+       A+ELF+ M  +D KP+  TF  +L+A   + E+ +Q   +H  V + G
Sbjct: 237 -SGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNL-EDLEQGRAIHRKVREDG 294

Query: 181 TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY 240
                 + N L+++Y KC SS        +  AR+VF+ M  RD ++W  ++  YV+   
Sbjct: 295 YESDLVIGNVLLNMYTKCSSS--------LEEARQVFERMRTRDVITWNILIVAYVQ--- 343

Query: 241 LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRL 300
              A++ LD   +                   M +  +  +E T ++V+SACA  G  R 
Sbjct: 344 YGQAKDALDIFKQ-------------------MQLENVAPNEITLSNVLSACAVLGAKRQ 384

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           GK VHA +     K      + + N+L+ +Y +CG +++   +F  + ++ LVSW+ +++
Sbjct: 385 GKAVHALIASGRCKA----DVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIA 440

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
           AY                               AQ+G+   GL+ F ++  EG    D  
Sbjct: 441 AY-------------------------------AQHGHSRTGLEHFWELLQEGLAADDVT 469

Query: 421 FAGAITSCAGLGALENGRQLHAQLV-HSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
               +++C+  G L+ G Q    +V   G          ++ + +R G +EAA  + + M
Sbjct: 470 MVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDM 529

Query: 480 PNV-DSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           P + D+V+W ++++    H +  RA  + +++ +
Sbjct: 530 PFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFE 563



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 160/327 (48%), Gaps = 59/327 (18%)

Query: 216 VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLM 275
           VF  +   + +SWT ++  + +N +    RE L                GY  R   M++
Sbjct: 14  VFHAIEHPNSVSWTLIVAAFARNGHY---REAL----------------GYYRR---MVL 51

Query: 276 LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG 335
             ++ D   +   I  C++S   + G+ +HA +L T      EF + +  AL+T+Y +C 
Sbjct: 52  EGLRPDGAMFVVAIGVCSSSKDLKQGQLLHAMILETR---LLEFDIILGTALITMYARC- 107

Query: 336 KVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQ 395
                         RDL                + A+  F+ M ++ L++W  +I+G ++
Sbjct: 108 --------------RDL----------------ELARKTFDEMGKKTLVTWNALIAGYSR 137

Query: 396 NGYGEEGLKLFSQM---RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
           NG     LK++  M     EG KP    F+ A+ +C  +G +  GR++ A+ V SGY S 
Sbjct: 138 NGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASD 197

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
               NALI MY++CG +E+A  VF+ + N D ++WN MI+   + G   +A+EL+++M  
Sbjct: 198 SIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGP 257

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGR 539
               P+ +TF+ +L+AC +   +++GR
Sbjct: 258 NDPKPNVVTFIGLLTACTNLEDLEQGR 284



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 148/303 (48%), Gaps = 15/303 (4%)

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
           Y   G + +A ++F A+   N +SWT++++  A+NG+  E L  + +M LEG +P    F
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSG-YDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
             AI  C+    L+ G+ LHA ++ +   +  +  G ALITMYARC  +E A   F+ M 
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMG 121

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLK---EGILPDRITFLTVLSACNHAGLVKE 537
               V+WNA+IA   ++G+   A+++Y+ M+    EG+ PD ITF + L AC   G + +
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQ 181

Query: 538 GRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
           GR   E      G           I++  + G    A+ V D L  +     W  +++G 
Sbjct: 182 GRE-IEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNR-DVIAWNTMISGY 239

Query: 598 RIHGNIDLGIQAAEQLFQLM-PH----HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
              G      QA E LFQ M P+    +  T++ L     NL   +    + + +R+ G 
Sbjct: 240 AKQG---AATQALE-LFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGY 295

Query: 653 KKE 655
           + +
Sbjct: 296 ESD 298



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 42/231 (18%)

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           MY +CG V  A  VF+ + + +SVSW  ++AA  ++G+   A+  Y +M+ EG+ PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 522 FLTVLSACNHAGLVKEGR----RYFETMHGPYGIPPGE---DHYARFIDLLCRAGKFSEA 574
           F+  +  C+ +  +K+G+       ET    + I  G      YAR  DL      F E 
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 575 ----------------------------KDVIDSLP--FKPSAPIWEALLAGCRIHGNID 604
                                       +D++   P   KP A  + + L  C + G+I 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 605 LGIQAAEQLFQLMPHHAGTYVL---LSNMYANLGRWDDAARVRKLMRDRGV 652
            G +   +   +   +A   ++   L NMY+  G  + A +V   +++R V
Sbjct: 181 QGREIEAR--TVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDV 229


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 257/755 (34%), Positives = 396/755 (52%), Gaps = 102/755 (13%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           +HAH I  G      + + ++D+Y K  +   AR +FD +P+ D                
Sbjct: 135 LHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERD---------------- 178

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
                            TV +N MI+ +S NS    +I +F DM    +  D+ T  +VL
Sbjct: 179 -----------------TVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVL 221

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
           +A+A + +E +  M + C   K G      VL  LIS+Y KC        +S  G  R +
Sbjct: 222 TAVAEL-QEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKC-------GKSCKG--RIL 271

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLML 276
           FD++ + D +S+  M++GY  N   ++A          V +    L SG           
Sbjct: 272 FDQIDQPDLISYNAMISGYTFNHETESA----------VTLFRELLASGQ---------- 311

Query: 277 RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
             +++  T   +I         +L + +    L+      P     V+ AL T+Y +  +
Sbjct: 312 --RVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPS----VSTALTTVYCRLNE 365

Query: 337 VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
           V  AR +F++ PE+ L SWNA++S Y   GL D A SLF+ M                  
Sbjct: 366 VQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM------------------ 407

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
                         +    P        +++CA LGAL  G+ +H  +     +S++   
Sbjct: 408 --------------MPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVS 453

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
            AL+ MYA+CG +  A  +F+ M + + V+WNAMI   G HG+G  A++L+ +ML+ GI 
Sbjct: 454 TALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIP 513

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
           P  +TFL++L AC+H+GLV EG   F +M   YG  P  +HYA  +D+L RAG+ + A +
Sbjct: 514 PTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALE 573

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636
            I+ +P +P   +W ALL  C IH N ++   A+++LFQL P + G YVLLSN+Y+    
Sbjct: 574 FIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRN 633

Query: 637 WDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRK 696
           +  AA VR++++ R + K PGC+ IE+D++ +VF   D +HP+A A+++ LE+L  +MR+
Sbjct: 634 FPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMRE 693

Query: 697 LGYVPDT-KFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHN 755
            GY  +T    LHD+E ++KE  ++ HSEKLA+AFGL+    G  +R++KNLR+C DCH 
Sbjct: 694 AGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHT 753

Query: 756 AFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           A KF+SK+  R IVVRD  RFHHF++G CSCGDYW
Sbjct: 754 ATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 148/345 (42%), Gaps = 67/345 (19%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTL------FDEIPQPDIVARTTL 87
           A ++   +++SG +     +  LI +Y     L  +R +         I QP +   T L
Sbjct: 299 AVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSV--STAL 356

Query: 88  IAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147
              Y   + V+ AR++F+++P K   +  +NAMI+ Y+ N     AI LF++M    + P
Sbjct: 357 TTVYCRLNEVQFARQLFDESPEKSLAS--WNAMISGYTQNGLTDRAISLFQEMM-PQLSP 413

Query: 148 DNFTFTSVLSALALIVEEEKQCMQMHC-TVVKSGTGLFTS--------VLNALISVYVKC 198
           +  T TS+LSA          C Q+   ++ K   GL  S        V  AL+ +Y KC
Sbjct: 414 NPVTVTSILSA----------CAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKC 463

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
            S         +  AR++FD M +++ ++W  M+TGY  + +   A +            
Sbjct: 464 GS---------IVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLF---------- 504

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV-HAYLLRTEAKPTP 317
                        +ML   I     T+ S++ AC++SGL   G ++ H+       +P  
Sbjct: 505 ------------YEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMS 552

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
           E        +V +  + G++  A +   +MP E     W A+L A
Sbjct: 553 EHY----ACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGA 593



 Score = 40.8 bits (94), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 9/162 (5%)

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           Q+ AQL+  G    LS+   L   +   G V     +FN +   D   +N +I     +G
Sbjct: 32  QIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNG 91

Query: 499 NGARAIELYEQMLKEGIL-PDRITFLTVLSACNHAGLVKEGRRYFETMHGPY---GIPPG 554
               +I LY  + K+  L PD  T+   +SA +      E  R    +H      G+   
Sbjct: 92  LPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRL----EDERVGVLLHAHSIVDGVASN 147

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
               +  +DL  +  +   A+ V D +P + +  +W  +++G
Sbjct: 148 LFVGSAIVDLYFKFTRAELARKVFDVMPERDTV-LWNTMISG 188


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 257/789 (32%), Positives = 417/789 (52%), Gaps = 108/789 (13%)

Query: 29  ITSSLARSVH--------AHMISSGFKPREHIINRLIDIYCKSLK------LVYARTLFD 74
           I ++ AR+ H          M+  G +P   +    I + C S K      L++A  L  
Sbjct: 29  IVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGV-CSSSKDLKQGQLLHAMILET 87

Query: 75  EIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAI 134
           ++ + DI+  T LI  Y+   +++LAR+ F++  +  +  V +NA+I  YS N +   A+
Sbjct: 88  QLLEFDIILGTALITMYARCRDLELARKTFDE--MGKKTLVTWNALIAGYSRNGDHRGAL 145

Query: 135 ELFRDM---RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
           ++++DM     + +KPD  TF+S L A + +V +  Q  ++    V SG    + V NAL
Sbjct: 146 KIYQDMVSKSPEGMKPDAITFSSALYACS-VVGDISQGREIEARTVASGYASDSIVQNAL 204

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           I++Y KC S         + +AR+VFD +  RD                           
Sbjct: 205 INMYSKCGS---------LESARKVFDRLKNRDV-------------------------- 229

Query: 252 SENVGVAWNALISGYVHRELKMLMLRI---------QLDEFTYTSVISACANSGLFRLGK 302
                +AWN +ISGY  +      L +         + +  T+  +++AC N      G+
Sbjct: 230 -----IAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGR 284

Query: 303 QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY 362
            +H    R   +   E  L + N L+ +Y KC                            
Sbjct: 285 AIH----RKVKEHGYESDLVIGNVLLNMYTKC---------------------------- 312

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
             +  ++EA+ +FE +R R++++W ++I    Q G  ++ L +F QM+LE   P +   +
Sbjct: 313 --SSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLS 370

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
             +++CA LGA   G+ +HA +      + +   N+L+ MY RCG ++    VF  + + 
Sbjct: 371 NVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDK 430

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
             VSW+ +IAA  QHG+    +E + ++L+EG+  D +T ++ LSAC+H G++KEG + F
Sbjct: 431 SLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSF 490

Query: 543 ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
            +M G +G+ P   H+   +DLL RAG+   A+++I  +PF P A  W +LL+GC++H +
Sbjct: 491 LSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHND 550

Query: 603 IDLGIQAAEQLFQLMPH-HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWI 661
                + A++LF+L       T  LLSN+YA  GRWDD   VRK    R  +K PGCS+I
Sbjct: 551 TKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDD---VRKTRNRRAARKNPGCSYI 607

Query: 662 EVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALST 721
           E+++ VH F+  D +HPE + +   +++L  +M+  GYVPD + VLH+++ ++KE  L  
Sbjct: 608 EINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCY 667

Query: 722 HSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRD 781
           HSEKLA+A+GL+  P G  + ++KNLR C DCH A KF+S++VGR+IVVRD  RFHHF +
Sbjct: 668 HSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFEN 727

Query: 782 GKCSCGDYW 790
           G CSC DYW
Sbjct: 728 GSCSCKDYW 736



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 120/514 (23%), Positives = 223/514 (43%), Gaps = 103/514 (20%)

Query: 1   MMMKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIY 60
           M+ K+ + ++  A  ++S L  C     I  S  R + A  ++SG+     + N LI++Y
Sbjct: 151 MVSKSPEGMKPDAITFSSALYACSVVGDI--SQGREIEARTVASGYASDSIVQNALINMY 208

Query: 61  CKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAM 120
            K   L  AR +FD +   D++A  T+I                                
Sbjct: 209 SKCGSLESARKVFDRLKNRDVIAWNTMI-------------------------------- 236

Query: 121 ITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSG 180
            + Y+       A+ELF+ M  +D KP+  TF  +L+A   + E+ +Q   +H  V + G
Sbjct: 237 -SGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNL-EDLEQGRAIHRKVKEHG 294

Query: 181 TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY 240
                 + N L+++Y KC SS        +  AR+VF+ +  RD ++W  ++  YV+   
Sbjct: 295 YESDLVIGNVLLNMYTKCSSS--------LEEARQVFERLRTRDVITWNILIVAYVQ--- 343

Query: 241 LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRL 300
              A++ LD   +                   M +  +  +E T ++V+SACA  G  R 
Sbjct: 344 YGQAKDALDIFKQ-------------------MQLENVAPNEITLSNVLSACAVLGAKRQ 384

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           GK VHA +     K      + + N+L+ +Y +CG +++   +F  + ++ LVSW+ +++
Sbjct: 385 GKAVHALIASGRCKA----DVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIA 440

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
           AY                               AQ+G+   GL+ F ++  EG    D  
Sbjct: 441 AY-------------------------------AQHGHSRTGLEHFWELLQEGLAADDVT 469

Query: 421 FAGAITSCAGLGALENGRQLHAQLV-HSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
               +++C+  G L+ G Q    +V   G          ++ + +R G +EAA  + + M
Sbjct: 470 MVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDM 529

Query: 480 PNV-DSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           P + D+V+W ++++    H +  RA  + +++ +
Sbjct: 530 PFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFE 563



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 131/260 (50%), Gaps = 10/260 (3%)

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
           Y   G + +A ++F A+   N +SWT++++  A+NG+  E L  + +M LEG +P    F
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSG-YDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
             AI  C+    L+ G+ LHA ++ +   +  +  G ALITMYARC  +E A   F+ M 
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMG 121

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLK---EGILPDRITFLTVLSACNHAGLVKE 537
               V+WNA+IA   ++G+   A+++Y+ M+    EG+ PD ITF + L AC+  G + +
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQ 181

Query: 538 GRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
           GR   E      G           I++  + G    A+ V D L  +     W  +++G 
Sbjct: 182 GRE-IEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNR-DVIAWNTMISGY 239

Query: 598 RIHGNIDLGIQAAEQLFQLM 617
              G      QA E LFQ M
Sbjct: 240 AKQG---AATQALE-LFQRM 255



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 42/231 (18%)

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           MY +CG V  A  VF+ + + +SVSW  ++AA  ++G+   A+  Y +M+ EG+ PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 522 FLTVLSACNHAGLVKEGR----RYFETMHGPYGIPPGE---DHYARFIDLLCRAGKFSEA 574
           F+  +  C+ +  +K+G+       ET    + I  G      YAR  DL      F E 
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 575 ----------------------------KDVIDSLP--FKPSAPIWEALLAGCRIHGNID 604
                                       +D++   P   KP A  + + L  C + G+I 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 605 LGIQAAEQLFQLMPHHAGTYVL---LSNMYANLGRWDDAARVRKLMRDRGV 652
            G +   +   +   +A   ++   L NMY+  G  + A +V   +++R V
Sbjct: 181 QGREIEAR--TVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDV 229


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 257/755 (34%), Positives = 396/755 (52%), Gaps = 102/755 (13%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           +HAH I  G      + + ++D+Y K  +   AR +FD +P+ D                
Sbjct: 135 LHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERD---------------- 178

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
                            TV +N MI+ +S NS    +I +F DM    +  D+ T  +VL
Sbjct: 179 -----------------TVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVL 221

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
           +A+A + +E +  M + C   K G      VL  LIS+Y KC        +S  G  R +
Sbjct: 222 TAVAEL-QEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKC-------GKSCKG--RIL 271

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLML 276
           FD++ + D +S+  M++GY  N   ++A          V +    L SG           
Sbjct: 272 FDQIDQPDLISYNAMISGYTFNHETESA----------VTLFRELLASGQ---------- 311

Query: 277 RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
             +++  T   +I         +L + +    L+      P     V+ AL T+Y +  +
Sbjct: 312 --RVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPS----VSTALTTVYCRLNE 365

Query: 337 VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
           V  AR +F++ PE+ L SWNA++S Y   GL D A SLF+ M                  
Sbjct: 366 VQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM------------------ 407

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
                         +    P        +++CA LGAL  G+ +H  +     +S++   
Sbjct: 408 --------------MPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVS 453

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
            AL+ MYA+CG +  A  +F+ M + + V+WNAMI   G HG+G  A++L+ +ML+ GI 
Sbjct: 454 TALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIP 513

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
           P  +TFL++L AC+H+GLV EG   F +M   YG  P  +HYA  +D+L RAG+ + A +
Sbjct: 514 PTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALE 573

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636
            I+ +P +P   +W ALL  C IH N ++   A+++LFQL P + G YVLLSN+Y+    
Sbjct: 574 FIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRN 633

Query: 637 WDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRK 696
           +  AA VR++++ R + K PGC+ IE+D++ +VF   D +HP+A A+++ LE+L  +MR+
Sbjct: 634 FPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMRE 693

Query: 697 LGYVPDT-KFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHN 755
            GY  +T    LHD+E ++KE  ++ HSEKLA+AFGL+    G  +R++KNLR+C DCH 
Sbjct: 694 AGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHT 753

Query: 756 AFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           A KF+SK+  R IVVRD  RFHHF++G CSCGDYW
Sbjct: 754 ATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 148/345 (42%), Gaps = 67/345 (19%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTL------FDEIPQPDIVARTTL 87
           A ++   +++SG +     +  LI +Y     L  +R +         I QP +   T L
Sbjct: 299 AVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSV--STAL 356

Query: 88  IAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147
              Y   + V+ AR++F+++P K   +  +NAMI+ Y+ N     AI LF++M    + P
Sbjct: 357 TTVYCRLNEVQFARQLFDESPEKSLAS--WNAMISGYTQNGLTDRAISLFQEMM-PQLSP 413

Query: 148 DNFTFTSVLSALALIVEEEKQCMQMHC-TVVKSGTGLFTS--------VLNALISVYVKC 198
           +  T TS+LSA          C Q+   ++ K   GL  S        V  AL+ +Y KC
Sbjct: 414 NPVTVTSILSA----------CAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKC 463

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
            S         +  AR++FD M +++ ++W  M+TGY  + +   A +            
Sbjct: 464 GS---------IVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLF---------- 504

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV-HAYLLRTEAKPTP 317
                        +ML   I     T+ S++ AC++SGL   G ++ H+       +P  
Sbjct: 505 ------------YEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMS 552

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
           E        +V +  + G++  A +   +MP E     W A+L A
Sbjct: 553 EHY----ACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGA 593



 Score = 40.0 bits (92), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 9/162 (5%)

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           Q+ AQL+  G    LS+   L   +   G V     +FN +   D   +N +I     +G
Sbjct: 32  QIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNG 91

Query: 499 NGARAIELYEQMLKEGIL-PDRITFLTVLSACNHAGLVKEGRRYFETMHGPY---GIPPG 554
               +I LY  + K   L PD  T+   +SA +      E  R    +H      G+   
Sbjct: 92  LPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRL----EDERVGVLLHAHSIVDGVASN 147

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
               +  +DL  +  +   A+ V D +P + +  +W  +++G
Sbjct: 148 LFVGSAIVDLYFKFTRAELARKVFDVMPERDTV-LWNTMISG 188


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 261/714 (36%), Positives = 383/714 (53%), Gaps = 77/714 (10%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D    + L   Y     V  AR++F+  P    DTV +N ++   S    G  A+E F  
Sbjct: 148 DTFVASALAKLYFVLSRVDHARKVFDTVPSP--DTVLWNTLLAGLS----GSEAVESFAR 201

Query: 140 MRRD-DVKPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           M  D  V+PD  T  SVL A A + +    +C+  H    K G      VL  LIS+Y K
Sbjct: 202 MVCDGSVRPDATTLASVLPAAAEVADVTMGRCV--HSFAEKCGLAEHEHVLTGLISLYSK 259

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C           + +AR +FD M + D +++  +++GY                      
Sbjct: 260 CGD---------VESARCLFDMMEKPDLVAYNALISGY---------------------- 288

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
           + N ++   V+   +++ L +  +  T  ++I   +  G   L + +H ++L++      
Sbjct: 289 SVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANS 348

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
               PV+ A+ TL+ +   +  AR  F+ MP                             
Sbjct: 349 ----PVSTAITTLHCRLNDMESARKAFDTMP----------------------------- 375

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
             E+ + SW  MISG AQNG  E  + LF QM     +P     +  +++CA LGAL  G
Sbjct: 376 --EKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLG 433

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           + LH  +     + ++    ALI MYA+CG +  A  +FNTM N + VSWNAMIA  G H
Sbjct: 434 KWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLH 493

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
           G GA A++LY+ ML   +LP   TFL+VL AC+H GLV+EG + F +M   Y I PG +H
Sbjct: 494 GQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEH 553

Query: 558 YARFIDLLCRAGKFSEAKDVIDSLPFKPSAP-IWEALLAGCRIHGNIDLGIQAAEQLFQL 616
               +DLL RAG+  EA ++I   P     P +W ALL  C +H + DL   A+++LF+L
Sbjct: 554 CTCMVDLLGRAGQLKEAFELISEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQKLFEL 613

Query: 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTA 676
            P ++G YVLLSN++ +  ++ +AA VR+  + R + K PG + IE+ NK HVF+  D A
Sbjct: 614 DPENSGYYVLLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRA 673

Query: 677 HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLP 736
           HP+++A+Y YLE+L  +M + GY P+T+  L+D+E ++KE+ +  HSEKLA+AFGL+   
Sbjct: 674 HPQSEAIYSYLEKLTAKMIEAGYRPETEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTE 733

Query: 737 GGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            G  +R++KNLR+C DCHNA KF+SKV  R IVVRD  RFHHFRDG CSCGDYW
Sbjct: 734 PGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 129/514 (25%), Positives = 219/514 (42%), Gaps = 86/514 (16%)

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQ------MHCTVVKSGTGLFTSVLNALISVYVKCVS 200
           PD+F+F    ++LA +               +H   V +G    T V +AL  +Y     
Sbjct: 105 PDSFSFAFAATSLAALCSRGGGAASSSAARALHALAVAAGYAADTFVASALAKLY----- 159

Query: 201 SPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDA-AREFLDGMSENVGVAW 259
             FV SR  +  AR+VFD +P  D + W T++ G   ++ +++ AR   DG         
Sbjct: 160 --FVLSR--VDHARKVFDTVPSPDTVLWNTLLAGLSGSEAVESFARMVCDG--------- 206

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                             ++ D  T  SV+ A A      +G+ VH++  +         
Sbjct: 207 -----------------SVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEH- 248

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
              V   L++LY KCG V  AR +F+ M + DLV++NA++S Y                 
Sbjct: 249 ---VLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGY----------------- 288

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
                         + NG     + LF+++   G  P        I   +  G     + 
Sbjct: 289 --------------SVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQC 334

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           LH  ++ SG+ ++     A+ T++ R   +E+A   F+TMP     SWNAMI+   Q+G 
Sbjct: 335 LHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGL 394

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA 559
              A+ L+EQM+K  + P+ IT  + LSAC   G +  G ++   +     + P      
Sbjct: 395 TEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLG-KWLHRIITEEDLEPNVYVMT 453

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF--QLM 617
             ID+  + G  SEA+ + +++  K +   W A++AG  +HG     ++  + +    L+
Sbjct: 454 ALIDMYAKCGSISEARRIFNTMDNK-NVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLL 512

Query: 618 PHHAGTYVLLSNMYA--NLGRWDDAARVRKLMRD 649
           P  A     LS +YA  + G  ++  +V + M D
Sbjct: 513 PTSA---TFLSVLYACSHGGLVEEGWKVFRSMTD 543



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 180/402 (44%), Gaps = 81/402 (20%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           ++ R VH+     G    EH++  LI +Y K   +  AR LFD + +PD+VA   LI+ Y
Sbjct: 229 TMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGY 288

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
           S                         N M+          +++ LF ++    + P++ T
Sbjct: 289 SV------------------------NGMVG---------SSVNLFTELMTLGLWPNSST 315

Query: 152 FTSVLSALALIVEE-EKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
             +++   +    +   QC  +H  V+KSG    + V  A+ +++ +            M
Sbjct: 316 LVALIPVHSPFGHDLLAQC--LHGFVLKSGFTANSPVSTAITTLHCRLND---------M 364

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
            +AR+ FD MPE+   SW  M++GY +N   + A    +                     
Sbjct: 365 ESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFE--------------------- 403

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
            +M+ L ++ +  T +S +SACA  G   LGK +H  +   + +P    ++ V  AL+ +
Sbjct: 404 -QMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEP----NVYVMTALIDM 458

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL----SW 386
           Y KCG ++EAR IFN M  +++VSWNA+++ Y   G   EA  L++ M + +LL    ++
Sbjct: 459 YAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATF 518

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
             ++   +  G  EEG K+F  M        DYA    I  C
Sbjct: 519 LSVLYACSHGGLVEEGWKVFRSMT------DDYAINPGIEHC 554


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 259/754 (34%), Positives = 391/754 (51%), Gaps = 100/754 (13%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           +HAH I  G+     + + L+D+YCK  ++VYAR +FD +P+                  
Sbjct: 130 LHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPE------------------ 171

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
                          RDTV +N MI     N     +I+LFR+M  D V+ D+ T T+VL
Sbjct: 172 ---------------RDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVL 216

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
            A A + +E K  M + C  +K G G    VL  LIS+Y KC           +  AR +
Sbjct: 217 PAAAEL-QELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGD---------VNTARLL 266

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLML 276
           F  +   D +++  M++G+  N           G   +V +    L SG           
Sbjct: 267 FRRINRPDLIAYNAMISGFTAN----------GGTECSVKLFRELLFSGE---------- 306

Query: 277 RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
             ++   T   +I   +  G   L   +H + +++     P     V+ A   +Y K  +
Sbjct: 307 --RVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPT----VSTAFTAIYNKLNE 360

Query: 337 VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
           ++ AR +F++ PE+ +V+WNA++S Y   G  + A SLF+ M                  
Sbjct: 361 IDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEM------------------ 402

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
                       M+ E F P        +++CA LG+L  G+ +H  +     + ++   
Sbjct: 403 ------------MKTE-FTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVS 449

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
            AL+ MYA+CG +  A  +F++M   ++V+WN MI   G HG G  A++LY +ML  G  
Sbjct: 450 TALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYN 509

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
           P  +TFL+VL AC+HAGLV EG   F  M   Y I P  +HYA  +D+L R+G+  +A +
Sbjct: 510 PSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALE 569

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636
            I  +P +P   +W  LL  C IH + D+   A+E+LF+L P   G YVLLSN+Y+    
Sbjct: 570 FIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDPGSVGYYVLLSNIYSVERN 629

Query: 637 WDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRK 696
           +  AA +R++++ R + K PGC+ IEV+   HVF+  D +H  A  +Y  LE+L  +MR+
Sbjct: 630 FPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSHSHATDIYAKLEKLTGKMRE 689

Query: 697 LGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNA 756
           +GY  +T   LHD+E ++KE A++ HSEKLA+AFGL+    G  +R++KNLR+C DCH A
Sbjct: 690 MGYQAETVPALHDVEEEEKELAVNVHSEKLAIAFGLITTEPGNEIRIIKNLRVCLDCHTA 749

Query: 757 FKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            KF+SK+  R IVVRD  RFHHF+DG CSCGDYW
Sbjct: 750 TKFISKITERVIVVRDANRFHHFKDGICSCGDYW 783



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 147/596 (24%), Positives = 247/596 (41%), Gaps = 107/596 (17%)

Query: 38  HAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNV 97
           HA  I +G++     + +L           +AR LF  +P+PDI                
Sbjct: 32  HAQFILNGYRFDLATLTKLTQKLFDFSATRHARALFFSVPKPDI---------------- 75

Query: 98  KLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPDNFTFTSVL 156
                              +N ++  +S N +  ++I L+  +RR+ ++ PDNFT+   +
Sbjct: 76  -----------------FLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAV 118

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
           +A +     +K  M +H   +  G G    V +AL+ +Y K          S +  AR+V
Sbjct: 119 AACS----NDKHLMLLHAHSIIDGYGSNVFVGSALVDLYCKF---------SRVVYARKV 165

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLML 276
           FD MPERD + W TM+ G VKN   D + +                      RE  M+  
Sbjct: 166 FDGMPERDTVLWNTMINGLVKNCCFDDSIQLF--------------------RE--MVAD 203

Query: 277 RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
            +++D  T T+V+ A A     ++G  +    L+        F   V   L++LY KCG 
Sbjct: 204 GVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFG----FCDYVLTGLISLYSKCGD 259

Query: 337 VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
           VN AR +F ++   DL+++NA                               MISG   N
Sbjct: 260 VNTARLLFRRINRPDLIAYNA-------------------------------MISGFTAN 288

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
           G  E  +KLF ++   G +       G I   +  G L     +H   V SG   + +  
Sbjct: 289 GGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVS 348

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
            A   +Y +   ++ A  +F+  P    V+WNAMI+   Q+G+   AI L+++M+K    
Sbjct: 349 TAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFT 408

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
           P+ +T  T+LSAC   G +  G ++   +     + P        +D+  + G  SEA  
Sbjct: 409 PNAVTITTILSACAQLGSLSFG-KWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQ 467

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632
           + DS+  K +   W  ++ G  +HG     ++   ++  L  ++      LS +YA
Sbjct: 468 LFDSMSEKNTV-TWNTMIFGYGLHGYGHEALKLYNEMLHL-GYNPSAVTFLSVLYA 521



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 130/291 (44%), Gaps = 7/291 (2%)

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSCA 429
           A++LF ++ + ++  + V++ G + N      + L++ +R      P ++ +A A+ +C+
Sbjct: 63  ARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACS 122

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
               L     LHA  +  GY S++  G+AL+ +Y +   V  A  VF+ MP  D+V WN 
Sbjct: 123 NDKHL---MLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNT 179

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY 549
           MI  L ++     +I+L+ +M+ +G+  D  T   VL A      +K G    + +    
Sbjct: 180 MINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMG-IQCLALKI 238

Query: 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609
           G    +      I L  + G  + A+ +   +  +P    + A+++G   +G  +  ++ 
Sbjct: 239 GFGFCDYVLTGLISLYSKCGDVNTARLLFRRIN-RPDLIAYNAMISGFTANGGTECSVKL 297

Query: 610 -AEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCS 659
             E LF      + T V L  +++  G    A  +       G+   P  S
Sbjct: 298 FRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVS 348



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 135/338 (39%), Gaps = 85/338 (25%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           LA S+H   + SG      +      IY K  ++  AR LFDE P+  +VA   +I    
Sbjct: 328 LACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMI---- 383

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                        + Y+ N +   AI LF++M + +  P+  T 
Sbjct: 384 -----------------------------SGYTQNGSTETAISLFKEMMKTEFTPNAVTI 414

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGT---GLFTSVLNALISVYVKCVSSPFVSSRSL 209
           T++LSA A +          H  ++KS      ++ S   AL+ +Y KC +         
Sbjct: 415 TTILSACAQLGSLSFGKWVHH--LIKSENLEPNIYVS--TALVDMYAKCGN--------- 461

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +  A ++FD M E++ ++W TM+ GY                           + GY H 
Sbjct: 462 ISEAWQLFDSMSEKNTVTWNTMIFGYG--------------------------LHGYGHE 495

Query: 270 ELK----MLMLRIQLDEFTYTSVISACANSGLFRLGKQV-HAYLLRTEAKPTPEFSLPVN 324
            LK    ML L       T+ SV+ AC+++GL   G+++ H  + +   +P  E      
Sbjct: 496 ALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYA--- 552

Query: 325 NALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
             +V +  + G++ +A +   +MP E     W  +L A
Sbjct: 553 -CMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGA 589



 Score = 44.7 bits (104), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 37/179 (20%), Positives = 76/179 (42%), Gaps = 12/179 (6%)

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           Q HAQ + +GY   L+    L            A  +F ++P  D   +N ++     + 
Sbjct: 30  QTHAQFILNGYRFDLATLTKLTQKLFDFSATRHARALFFSVPKPDIFLFNVLVRGFSLND 89

Query: 499 NGARAIELYEQMLKEGIL-PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP-GED 556
           + + +I LY  + +   L PD  T+   ++AC++        ++   +H    I   G +
Sbjct: 90  SPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSN-------DKHLMLLHAHSIIDGYGSN 142

Query: 557 HY--ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
            +  +  +DL C+  +   A+ V D +P + +  +W  ++ G   +   D  IQ   ++
Sbjct: 143 VFVGSALVDLYCKFSRVVYARKVFDGMPERDTV-LWNTMINGLVKNCCFDDSIQLFREM 200


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 250/693 (36%), Positives = 389/693 (56%), Gaps = 69/693 (9%)

Query: 103 MFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALI 162
           +FN+   K  D   +N++I   + + +   A+  F  MR+  + P   +F   + A + +
Sbjct: 31  LFNRYVDKT-DVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSL 89

Query: 163 VE--EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEM 220
           ++    KQ  Q    V    + +F S  +ALI +Y  C           +  AR+VFDE+
Sbjct: 90  LDIFSGKQTHQ-QAFVFGYQSDIFVS--SALIVMYSTC---------GKLEDARKVFDEI 137

Query: 221 PERDELSWTTMMTGY-VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQ 279
           P+R+ +SWT+M+ GY +  + LDA   F D + E                +    M    
Sbjct: 138 PKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEE--------------NDDDATMF--- 180

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK--V 337
           LD     SVISAC+      L + +H++++    K   +  + V N L+  Y K G+  V
Sbjct: 181 LDSMGMVSVISACSRVAAKGLTESIHSFVI----KRGFDRGVSVGNTLLDAYAKGGEGGV 236

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNG 397
             AR IF+Q+ ++D VS+N+I+S Y  +G+ +EA  +F  + +  ++++  +        
Sbjct: 237 AVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCI-------- 288

Query: 398 YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN 457
                                   +  + + +  GAL  G+ +H Q++  G +  +  G 
Sbjct: 289 ----------------------TLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGT 326

Query: 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
           ++I MY +CG VE A   F+ M N +  SW AMIA  G HG+ A+A+EL+  M+  G+ P
Sbjct: 327 SIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRP 386

Query: 518 DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577
           + ITF++VL+AC+HAGL   G  +F  M G +G+ PG +HY   +DLL RAG   +A D+
Sbjct: 387 NYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDL 446

Query: 578 IDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRW 637
           I  +  +P + IW +LLA CRIH N++L   +  +LF+L P + G Y+LLS++YA+ GRW
Sbjct: 447 IQKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADSGRW 506

Query: 638 DDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKL 697
            D  RVR  M++RG+ K PG S +E++ +VHVFL+ D  HP+ + +Y++L +L  ++ + 
Sbjct: 507 KDVERVRMTMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEA 566

Query: 698 GYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAF 757
           GYV +T  V HD++ ++KE  L  HSEKLA+AFG+M    G+TV V+KNLR+C DCHN  
Sbjct: 567 GYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVI 626

Query: 758 KFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           K +SK+V RE VVRD KRFHHF+DG CSCGDYW
Sbjct: 627 KLISKIVDREFVVRDAKRFHHFKDGFCSCGDYW 659



 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 103/438 (23%), Positives = 189/438 (43%), Gaps = 76/438 (17%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           Q DI   + LI  YS    ++ AR++F++ P   R+ V + +MI  Y  N N   A+ LF
Sbjct: 108 QSDIFVSSALIVMYSTCGKLEDARKVFDEIP--KRNIVSWTSMIRGYDLNGNALDAVSLF 165

Query: 138 RDMRRDDVKPDNFTFTSVLSALALI-----VEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           +D+  ++   D   F   +  +++I     V  +     +H  V+K G     SV N L+
Sbjct: 166 KDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLL 225

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
             Y K            +  AR++FD++ ++D +S+ ++M+ Y ++           GMS
Sbjct: 226 DAYAK-------GGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQS-----------GMS 267

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
                 +  LI   V          +  +  T ++V+ A ++SG  R+GK +H  ++R  
Sbjct: 268 NEAFDVFRRLIKEKV----------VTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRM- 316

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
                E  + V  +++ +Y KCG+V  AR  F++M  +++ SW A+++ Y          
Sbjct: 317 ---GLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGY---------- 363

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
                                  +G+  + L+LF  M   G +P    F   + +C+  G
Sbjct: 364 ---------------------GMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAG 402

Query: 433 ALENG-RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAM 490
             + G    +A     G +  L     ++ +  R G ++ A  +   M    DS+ W+++
Sbjct: 403 LHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSL 462

Query: 491 IAALGQHGNGARAIELYE 508
           +AA   H N    +EL E
Sbjct: 463 LAACRIHKN----VELAE 476



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 137/336 (40%), Gaps = 78/336 (23%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLK--LVYARTLFDEIPQPDIVARTTLIAA 90
           L  S+H+ +I  GF     + N L+D Y K  +  +  AR +FD+I   D V+       
Sbjct: 201 LTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVS------- 253

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
                                     YN++++ Y+ +   + A ++FR + ++ V     
Sbjct: 254 --------------------------YNSIMSVYAQSGMSNEAFDVFRRLIKEKV----V 283

Query: 151 TFTSVLSALALIVEEEKQCMQ----MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           TF  +  +  L+       ++    +H  V++ G      V  ++I +Y KC        
Sbjct: 284 TFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKC-------- 335

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              +  AR  FD M  ++  SWT M+ GY  + +   A E    M ++ GV  N +    
Sbjct: 336 -GRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDS-GVRPNYI---- 389

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                            T+ SV++AC+++GL  +G     +    + +   E  L     
Sbjct: 390 -----------------TFVSVLAACSHAGLHDVGWH---WFNAMKGRFGVEPGLEHYGC 429

Query: 327 LVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
           +V L  + G + +A D+  +M  E D + W+++L+A
Sbjct: 430 MVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAA 465


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 259/777 (33%), Positives = 395/777 (50%), Gaps = 106/777 (13%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           + S LQ C+   P    + R +HA ++ S         N   D+Y               
Sbjct: 254 FVSALQACE--GPTFIKIGRGIHAVILKS---------NHFTDVY--------------- 287

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
                      LIA Y+    ++ A  +F     K  D V +N +++    N     AI 
Sbjct: 288 -------VSNALIAMYANCGQMEDAERVFKSMLFK--DCVSWNTLLSGMVQNDMYSDAIN 338

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
            F+DM+    KPD  +  ++++A           M++H   +K G      + N+LI +Y
Sbjct: 339 HFQDMQDSGQKPDQVSVLNMIAASGRSANLLAG-MEVHAYAIKHGIDSNMHIGNSLIDMY 397

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND-YLDAAREFLDGMSEN 254
            KC    +      MG+A   F+ MPE+D +SWTT++ GY +N+ +LDA           
Sbjct: 398 GKCCCVKY------MGSA---FEYMPEKDLISWTTIIAGYAQNECHLDA----------- 437

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
                       ++   K+ + ++ +D     S++ AC+     +L K++H Y+L+    
Sbjct: 438 ------------LNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLA 485

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
                                               D++  NAI++ Y    L+D A+ +
Sbjct: 486 ------------------------------------DILIQNAIVNVYGELALVDYARHV 509

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
           FE++  ++++SWT MI+    NG   E L+LF+ +     +P        + + A L +L
Sbjct: 510 FESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSL 569

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
           + G+++H  L+  G+       N+L+ MYARCG +E A  +FN +   D + W +MI A 
Sbjct: 570 KKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINAN 629

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
           G HG G  AI+L+ +M  E +LPD ITFL +L AC+H+GLV EG+++FE M   Y + P 
Sbjct: 630 GMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPW 689

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
            +HYA  +DLL R+    EA   + ++P +PSA +W ALL  CRIH N DLG  AA++L 
Sbjct: 690 PEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLL 749

Query: 615 QLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDD 674
           QL   ++G YVL+SN +A  GRW+D   VR +M+   +KK+PGCSWIEV+NK+H F+  D
Sbjct: 750 QLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVENKIHTFMARD 809

Query: 675 TAHPEAQAVYKYLEQLV-LEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLM 733
            +HP+   +Y  L Q   L   K GY   TK V HD+  ++K   L  HSE+LA+ +GL+
Sbjct: 810 KSHPQCNNIYLKLAQFTKLLKEKGGYRAQTKLVFHDVCEEEKTQMLYGHSERLALGYGLL 869

Query: 734 KLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
               G  +R+ KNLRIC DCH  FK  S++  R +VVRD  RFHHF  G CSCGD+W
Sbjct: 870 VTSKGTCLRITKNLRICDDCHAFFKIASEISQRTLVVRDASRFHHFERGLCSCGDFW 926



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 129/466 (27%), Positives = 201/466 (43%), Gaps = 77/466 (16%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           T  +  Y    +   A ++F+K  +  R    +NAMI A         AIEL+++MR   
Sbjct: 86  TKFVHMYGKCGSFYDAVKVFDK--MSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLG 143

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           V  D FTF  VL A     E    C ++H   VK G G F  V NALI++Y KC      
Sbjct: 144 VSLDAFTFPCVLKACGAFKERRLGC-EIHGVAVKCGYGGFVFVCNALIAMYAKCGD---- 198

Query: 205 SSRSLMGAARRVFDE--MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL 262
                +G AR +FD   M + D +SW ++++ +V       A      M E VGV  N  
Sbjct: 199 -----LGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQE-VGVESNT- 251

Query: 263 ISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS-L 321
                               +T+ S + AC      ++G+ +HA +L++       F+ +
Sbjct: 252 --------------------YTFVSALQACEGPTFIKIGRGIHAVILKSN-----HFTDV 286

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
            V+NAL+ +Y  CG++ +A  +F  M  +D VSWN +L                      
Sbjct: 287 YVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLL---------------------- 324

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
                    SG+ QN    + +  F  M+  G KP   +    I +      L  G ++H
Sbjct: 325 ---------SGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVH 375

Query: 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGA 501
           A  +  G DS++  GN+LI MY +C  V+     F  MP  D +SW  +IA   Q+    
Sbjct: 376 AYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHL 435

Query: 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
            A+ L  ++  E +  D +   ++L AC  +GL  E  +  + +HG
Sbjct: 436 DALNLLRKVQLEKMDVDPMMIGSILLAC--SGLKSE--KLIKEIHG 477



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 167/369 (45%), Gaps = 51/369 (13%)

Query: 240 YLDAAREFLDGMSENVGVAWNALISGYVHR-------EL--KMLMLRIQLDEFTYTSVIS 290
           + DA + F D MSE     WNA+I   V         EL  +M +L + LD FT+  V+ 
Sbjct: 98  FYDAVKVF-DKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLK 156

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           AC      RLG ++H   ++          + V NAL+ +Y KCG +  AR +F+     
Sbjct: 157 ACGAFKERRLGCEIHGVAVKCGYGGF----VFVCNALIAMYAKCGDLGGARVLFD----- 207

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
                         +GL          M + + +SW  +IS     G   E L LF +M+
Sbjct: 208 --------------SGL----------MEKDDPVSWNSIISAHVGEGESLEALSLFRRMQ 243

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
             G +   Y F  A+ +C G   ++ GR +HA ++ S + + +   NALI MYA CG +E
Sbjct: 244 EVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQME 303

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
            A  VF +M   D VSWN +++ + Q+   + AI  ++ M   G  PD+++ L +++A  
Sbjct: 304 DAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASG 363

Query: 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFID-LLCRAGKFSEAKDVIDSLPFKPSAPI 589
            +  +  G      +H  Y I  G D      + L+   GK    K +  +  + P   +
Sbjct: 364 RSANLLAGME----VHA-YAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDL 418

Query: 590 --WEALLAG 596
             W  ++AG
Sbjct: 419 ISWTTIIAG 427



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 136/320 (42%), Gaps = 50/320 (15%)

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           Y+  +  CA+      G+Q+HA+ L+T+      F   ++   V +Y KCG   +A  +F
Sbjct: 49  YSQALELCASHKALPQGQQLHAHFLKTQNYLDSVF---LDTKFVHMYGKCGSFYDAVKVF 105

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           ++M                                ER + +W  MI      G   E ++
Sbjct: 106 DKMS-------------------------------ERTIFTWNAMIGACVSAGRYVEAIE 134

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           L+ +MR+ G     + F   + +C        G ++H   V  GY   +   NALI MYA
Sbjct: 135 LYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYA 194

Query: 465 RCGVVEAANCVFNT--MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF 522
           +CG +  A  +F++  M   D VSWN++I+A    G    A+ L+ +M + G+  +  TF
Sbjct: 195 KCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTF 254

Query: 523 LTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA------RFIDLLCRAGKFSEAKD 576
           ++ L AC     +K GR       G + +    +H+         I +    G+  +A+ 
Sbjct: 255 VSALQACEGPTFIKIGR-------GIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAER 307

Query: 577 VIDSLPFKPSAPIWEALLAG 596
           V  S+ FK     W  LL+G
Sbjct: 308 VFKSMLFKDCVS-WNTLLSG 326



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 114/274 (41%), Gaps = 47/274 (17%)

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANC 474
           P   A++ A+  CA   AL  G+QLHA  + +  Y  S+      + MY +CG    A  
Sbjct: 44  PLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVK 103

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
           VF+ M      +WNAMI A    G    AIELY++M   G+  D  TF  VL AC   G 
Sbjct: 104 VFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKAC---GA 160

Query: 535 VKEGRRYFETMHGPYGIPPGEDHYA----RFIDLLCRAGKFSEAKDVIDSLPFKPSAPI- 589
            KE RR    +HG   +  G   +       I +  + G    A+ + DS   +   P+ 
Sbjct: 161 FKE-RRLGCEIHG-VAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVS 218

Query: 590 WEALLAGCRIHGNI-----------DLGIQAAEQLF---------------------QLM 617
           W ++++     G             ++G+++    F                      ++
Sbjct: 219 WNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVIL 278

Query: 618 PHHAGTYVLLSN----MYANLGRWDDAARVRKLM 647
             +  T V +SN    MYAN G+ +DA RV K M
Sbjct: 279 KSNHFTDVYVSNALIAMYANCGQMEDAERVFKSM 312


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/623 (37%), Positives = 345/623 (55%), Gaps = 44/623 (7%)

Query: 170 MQMHCTVVKSGTGLFTSV--LNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS 227
           +Q+H  ++ SG     S+  L  L S++ KC              AR VFD  P    + 
Sbjct: 69  LQIHAQIIVSGFKHHHSITHLINLYSLFHKC------------DLARSVFDSTPNPSRIL 116

Query: 228 WTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTS 287
           W +M+  Y ++   + A E    M E  G                     ++ D F    
Sbjct: 117 WNSMIRAYTRSKQYNEALEMYYCMVEKGG---------------------LERDVFIGAG 155

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           ++   +  G  +  ++V   +        P+  +   NA++    +      AR +F+QM
Sbjct: 156 LVDMYSKMGDLKRAREVFDKM--------PKRDVVAWNAMIAGLSQSEDPYVARRVFDQM 207

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
            ++D VSW  +++ Y   G   E   LF+ M+  N+ +W V+I+   QNG+ +E +  F 
Sbjct: 208 VDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNV-TWNVIIAAYMQNGHAKEAISSFH 266

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467
           QMRLE F P    F   + + A L A   G   HA ++  G+ S+   GN+LI MYA+CG
Sbjct: 267 QMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCG 326

Query: 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
            ++ +  +FN M + D+VSWNAM++    HG+G RAI L+  M +  +  D ++F++VLS
Sbjct: 327 QLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLS 386

Query: 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSA 587
           AC HAGLV+EGR+ F +M   Y I P  +HYA  +DLL RAG F E    I  +P +P A
Sbjct: 387 ACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDA 446

Query: 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647
            +W ALL  CR+H N+ LG  A + L +L P +   +V+LS++YA  GRW DA + R  M
Sbjct: 447 GVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKM 506

Query: 648 RDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVL 707
            D G+KK PGCSW+E+ NKVH F V D +HP+ ++++     L+ +M K+GYVPD   VL
Sbjct: 507 NDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVL 566

Query: 708 HDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGRE 767
            ++E + KE  L +HSE+LA+ F L+  P G+T++++KNLR+C DCH   KF+SK+  R 
Sbjct: 567 QNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRR 626

Query: 768 IVVRDGKRFHHFRDGKCSCGDYW 790
           I+VRD  RFHHF DG CSC DYW
Sbjct: 627 IIVRDATRFHHFEDGICSCNDYW 649



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 124/483 (25%), Positives = 204/483 (42%), Gaps = 89/483 (18%)

Query: 41  MISSGFKPREHIINR-LIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKL 99
           M+  G   R+  I   L+D+Y K   L  AR +FD++P+ D+VA   +IA  S S++  +
Sbjct: 140 MVEKGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYV 199

Query: 100 AREMFNKTPLKMRDTVFYNAMITAYSHN----------------------------SNGH 131
           AR +F++  +  +D V +  M+  Y+HN                             NGH
Sbjct: 200 ARRVFDQ--MVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVTWNVIIAAYMQNGH 257

Query: 132 A--AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLN 189
           A  AI  F  MR ++  P++ TF SVL A A +    ++ M  H  +++ G    T V N
Sbjct: 258 AKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLA-AFREGMAFHACIIQMGFLSNTLVGN 316

Query: 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD 249
           +LI +Y KC           +  + ++F+EM  +D +SW  M++GY  + + D A     
Sbjct: 317 SLIDMYAKC---------GQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFS 367

Query: 250 GMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV-HAYL 308
            M E+                      ++Q+D  ++ SV+SAC ++GL   G+++ H+  
Sbjct: 368 LMQES----------------------QVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMS 405

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA---YVS 364
            +   KP  E        +V L  + G  +E       MP E D   W A+L +   + +
Sbjct: 406 DKYHIKPDLEHYA----CMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSN 461

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
             L + A      +  RN   + V+ S  AQ+G   +  K  S+M   G K         
Sbjct: 462 VKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLK--------- 512

Query: 425 ITSCAGLGALENGRQLHAQLV----HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
                G   +E   ++HA  V    H   +S     N L+    + G V   +CV   + 
Sbjct: 513 --KTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVE 570

Query: 481 NVD 483
             D
Sbjct: 571 EED 573



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 109/437 (24%), Positives = 175/437 (40%), Gaps = 130/437 (29%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y   L  C   NP+       +HA +I SGFK   H I  LI++Y          +LF +
Sbjct: 55  YPRLLSSCKHLNPLLQ-----IHAQIIVSGFK-HHHSITHLINLY----------SLFHK 98

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
                                  LAR +F+ TP   R  + +N+MI AY+ +   + A+E
Sbjct: 99  ---------------------CDLARSVFDSTPNPSR--ILWNSMIRAYTRSKQYNEALE 135

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           ++                                   +C V K G      +   L+ +Y
Sbjct: 136 MY-----------------------------------YCMVEKGGLERDVFIGAGLVDMY 160

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
                    S    +  AR VFD+MP+RD ++W  M+ G  +++    AR   D M +  
Sbjct: 161 ---------SKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQD 211

Query: 256 GVAWNALISGYVH----------------------------------RELKMLMLRIQLD 281
            V+W  +++GY H                                  +E      +++L+
Sbjct: 212 DVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVTWNVIIAAYMQNGHAKEAISSFHQMRLE 271

Query: 282 EF-----TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
            F     T+ SV+ A A    FR G   HA +++         +  V N+L+ +Y KCG+
Sbjct: 272 NFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLS----NTLVGNSLIDMYAKCGQ 327

Query: 337 VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL----LSWTVMISG 392
           ++ +  +FN+M  +D VSWNA+LS Y   G  D A +LF  M+E  +    +S+  ++S 
Sbjct: 328 LDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSA 387

Query: 393 LAQNGYGEEGLKLFSQM 409
               G  EEG K+F  M
Sbjct: 388 CRHAGLVEEGRKIFHSM 404



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 40/172 (23%)

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           ++SC  L  L    Q+HAQ++ SG+    S  + LI +Y+     + A  VF++ PN   
Sbjct: 59  LSSCKHLNPL---LQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPSR 114

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
           + WN+MI A  +      A+E+Y  M+++G L +R  F+        AGLV         
Sbjct: 115 ILWNSMIRAYTRSKQYNEALEMYYCMVEKGGL-ERDVFIG-------AGLV--------- 157

Query: 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
                             D+  + G    A++V D +P K     W A++AG
Sbjct: 158 ------------------DMYSKMGDLKRAREVFDKMP-KRDVVAWNAMIAG 190


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/595 (40%), Positives = 343/595 (57%), Gaps = 47/595 (7%)

Query: 210 MGAARRVFDEMP----ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265
           M   RR+   +      R  ++   +++ Y K   LD AR   +G+ E   V+W+A+I  
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGA 60

Query: 266 Y-VH-RELKMLML--------RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           Y +H R  + L+L        R++ +  T+T V +AC        G+++HA  + +    
Sbjct: 61  YALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASG--- 117

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
                L  +NA++                           NA+L+ YV  G ++EA+ +F
Sbjct: 118 ----ELKSSNAILE--------------------------NALLNMYVRCGSLEEARKVF 147

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
           + M   +  SWT MI+   +N    E L+LF +M LEG  P     A  + +CA  GAL+
Sbjct: 148 DTMDHPDAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACSGALK 207

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            G+Q+H++L  SG+ SS+ A  AL+ MYA+CG +E ++ VF  M   +SVSW AMIAAL 
Sbjct: 208 VGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALA 267

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
           QHG G  A+EL+++M  EG++ D  TF+ VL AC+HAGL+KE   +F +M   Y I P E
Sbjct: 268 QHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTE 327

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
            HY R +D + RAG+  +A+++I S+PF P    W+ LL  CRIH   +   + AE L +
Sbjct: 328 THYCRALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKVAELLSK 387

Query: 616 LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
           L P  +  Y LL N+YA  GR+ D  RVRK M DRG+KK PG S+IEV NKVH F+  D 
Sbjct: 388 LAPEDSMAYTLLGNVYAATGRYGDQMRVRKGMTDRGLKKVPGKSFIEVKNKVHEFVAGDR 447

Query: 676 AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKL 735
           AHP    +   LE+L   MR+ GYVP+TK VLH +  ++KE  +  HSEKLA+AFGL+  
Sbjct: 448 AHPSRDEILLELEKLGGRMREAGYVPNTKDVLHAVNEEEKEQLIGLHSEKLAIAFGLIAT 507

Query: 736 PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           P G  + ++KNLR+C DCH A K ++K++ R IVVRD  RFHHF DG+CSC DYW
Sbjct: 508 PPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRIVVRDTHRFHHFEDGQCSCKDYW 562



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 124/488 (25%), Positives = 205/488 (42%), Gaps = 113/488 (23%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R +H+ +   GF       N L+ +Y K   L  AR +F+ I +  +V+ +        
Sbjct: 4   GRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSA------- 56

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD-VKPDNFTF 152
                                     MI AY+ +  G  A+ LF  MR D  V+P+  TF
Sbjct: 57  --------------------------MIGAYALHGRGQEALLLFHRMRNDGRVEPNAMTF 90

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL--NALISVYVKCVSSPFVSSRSLM 210
           T V +A   ++E+ +Q  ++H   + SG    ++ +  NAL+++YV+C S         +
Sbjct: 91  TGVFNACG-VIEDLEQGREIHALAMASGELKSSNAILENALLNMYVRCGS---------L 140

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
             AR+VFD M   D  SWT+M+T   +N  L  A E                     HR 
Sbjct: 141 EEARKVFDTMDHPDAFSWTSMITACTENCELLEALELF-------------------HR- 180

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
             M +  I     T  SV++ACA SG  ++GKQ+H+ L  +        S+    AL+ +
Sbjct: 181 --MNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHS----SVLAQTALLDM 234

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL----SW 386
           Y KCG +  +  +F  M  R+ VSW A+++A    G  DEA  LF+ M    ++    ++
Sbjct: 235 YAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTF 294

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS-CAGLGALENGRQLHAQLV 445
             ++   +  G  +E L+ F  M +E     DYA A   T  C  L  +           
Sbjct: 295 ICVLRACSHAGLIKESLEFFHSM-VE-----DYAIAPTETHYCRALDTI----------- 337

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAI 504
                              R G ++ A  + ++MP + ++++W  ++ A   H    RA 
Sbjct: 338 ------------------GRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERAT 379

Query: 505 ELYEQMLK 512
           ++ E + K
Sbjct: 380 KVAELLSK 387



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 165/392 (42%), Gaps = 82/392 (20%)

Query: 34  ARSVHAHMISSG-FKPREHII-NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
            R +HA  ++SG  K    I+ N L+++Y +   L  AR +FD +  PD         A+
Sbjct: 106 GREIHALAMASGELKSSNAILENALLNMYVRCGSLEEARKVFDTMDHPD---------AF 156

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
           S                        + +MITA + N     A+ELF  M  + + P + T
Sbjct: 157 S------------------------WTSMITACTENCELLEALELFHRMNLEGIPPTSVT 192

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL--NALISVYVKCVSSPFVSSRSL 209
             SVL+A A      K   Q+H  +    +G  +SVL   AL+ +Y KC S         
Sbjct: 193 LASVLNACA-CSGALKVGKQIHSRL--DASGFHSSVLAQTALLDMYAKCGS--------- 240

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +  + +VF  M  R+ +SWT M+    ++   D A E    M+          + G V  
Sbjct: 241 LECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMN----------LEGMV-- 288

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ-VHAYLLRTEAKPTPEFSLPVNNALV 328
                      D  T+  V+ AC+++GL +   +  H+ +      PT         AL 
Sbjct: 289 ----------ADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYC---RALD 335

Query: 329 TLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA---YVSAGLIDEAKSLFEAMRERNLL 384
           T+  + G++ +A ++ + MP   + ++W  +L+A   +  A    +   L   +   + +
Sbjct: 336 TI-GRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKVAELLSKLAPEDSM 394

Query: 385 SWTVMISGLAQNG-YGEEGLKLFSQMRLEGFK 415
           ++T++ +  A  G YG++ +++   M   G K
Sbjct: 395 AYTLLGNVYAATGRYGDQ-MRVRKGMTDRGLK 425


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 272/828 (32%), Positives = 412/828 (49%), Gaps = 106/828 (12%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           + + LQ C     +     R VH H+   GF+    +   LI +Y +   +  A+ +F+ 
Sbjct: 8   FVALLQRCSSAKNVDH--GRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEI 65

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           + + D+ A                                 +  MI  Y    +   A+ 
Sbjct: 66  LERKDVFA---------------------------------WTRMIGIYCQQGDYDRALG 92

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           +F  M+ +DV P   T+ ++L+A A   E  K  M++H  +++ G      V  ALI++Y
Sbjct: 93  MFYQMQEEDVMPTKVTYVAILNACA-STESLKDGMEIHGQILQQGFEGDVFVGTALINMY 151

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREF-----LDG 250
            KC S         +  A   F  +  RD +SWT M+   V++D    AR       LDG
Sbjct: 152 NKCGS---------VRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDG 202

Query: 251 MSEN---VGVAWNALISGYVHRELKMLMLRI-----QLDEFTYTSVISACANSGLFRLGK 302
           +  N   +   +NA    +   E K +   +     + D     S ++   N+GL    +
Sbjct: 203 VVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDAR 262

Query: 303 QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE------------- 349
           ++   ++  +        +   N ++T Y +     EA  +F ++ +             
Sbjct: 263 RLFEDMVDRD--------VVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLM 314

Query: 350 --------------------------RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
                                     RD+V   A++S Y       +A  +F  M  +++
Sbjct: 315 LNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDV 374

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
           ++WTVM    AQNG+ +E L+LF +M+LEG +P        + +CA L AL+ GRQ+H+ 
Sbjct: 375 ITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSH 434

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
           ++ +G+   +    ALI MY +CG +  A  VF  M   D + WN+M+ A  QHG     
Sbjct: 435 IIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDET 494

Query: 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563
           ++L+ QM  +G   D ++F++VLSA +H+G V +G +YF  M   + I P  + Y   +D
Sbjct: 495 LQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVD 554

Query: 564 LLCRAGKFSEAKDVIDSLP-FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622
           LL RAG+  EA D++  L    P   +W  LL  CR H   D    AAEQ+ +  P H+G
Sbjct: 555 LLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSG 614

Query: 623 TYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQA 682
            YV+LSN+YA  G WD   R+RKLMR RGVKKEPG S IE+ N+VH FL  D +HP    
Sbjct: 615 AYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHP 674

Query: 683 VYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVR 742
           +Y  L+ L  EMR  GY+PDTK +LHD+E ++KE  L  HSE+LA+AFGLM  P G  +R
Sbjct: 675 IYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLMSTPPGTPLR 734

Query: 743 VLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           V+KNLR+C DCH A K++SK+ GREI+VRD  RFH+F+DG+CSC DYW
Sbjct: 735 VIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 782



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 125/539 (23%), Positives = 214/539 (39%), Gaps = 110/539 (20%)

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVS 205
           KPD   F ++L   +   +      ++H  V   G      V   LI +Y +C S P   
Sbjct: 2   KPDTAFFVALLQRCS-SAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVP--- 57

Query: 206 SRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265
                  A++VF+ +  +D  +WT M+  Y +    D A      M E            
Sbjct: 58  ------EAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEE----------- 100

Query: 266 YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
                       +   + TY ++++ACA++   + G ++H  +L    +   E  + V  
Sbjct: 101 -----------DVMPTKVTYVAILNACASTESLKDGMEIHGQIL----QQGFEGDVFVGT 145

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER---- 381
           AL+ +Y KCG V  A D F ++  RD+VSW A+++A V       A+ L+  M+      
Sbjct: 146 ALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVP 205

Query: 382 -------------------------NLLSWTVMISGL-----AQNGYGEEGL-----KLF 406
                                    +L+S  VM S +     A N +G  GL     +LF
Sbjct: 206 NKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLF 265

Query: 407 SQM-----------------------------RLE--GFKPCDYAFAGAITSCAGLGALE 435
             M                             RL+  G K  D  F   +     L +L 
Sbjct: 266 EDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLA 325

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            G+ +H  +  +GYD  +    AL+++Y RC     A  +F  M + D ++W  M  A  
Sbjct: 326 KGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYA 385

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR-YFETMHGPYGIPPG 554
           Q+G    A++L+++M  EG  P   T + VL  C H   +++GR+ +   +   + +   
Sbjct: 386 QNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMV 445

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
            +     I++  + GK +EA+ V + +  K    +W ++L     HG  D  +Q   Q+
Sbjct: 446 VE--TALINMYGKCGKMAEARSVFEKMA-KRDILVWNSMLGAYAQHGYYDETLQLFNQM 501



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 131/326 (40%), Gaps = 53/326 (16%)

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473
           FKP    F   +  C+    +++GR++H  +   G++ +      LI MYA+CG V  A 
Sbjct: 1   FKPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 60

Query: 474 CVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533
            VF  +   D  +W  MI    Q G+  RA+ ++ QM +E ++P ++T++ +L+AC    
Sbjct: 61  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 120

Query: 534 LVKEGRRYFETMHGPY---GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590
            +K+G      +HG     G           I++  + G    A D    L  +     W
Sbjct: 121 SLKDGME----IHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVS-W 175

Query: 591 EALLAGCRIHGNIDLG--IQAAEQLFQLMPHHAGTYVLLS-------------------- 628
            A++A C  H    L   +    QL  ++P+    Y + +                    
Sbjct: 176 TAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSS 235

Query: 629 --------------NMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDD 674
                         NM+ N G   DA R+ + M DR V      +W    N V  F V +
Sbjct: 236 RVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDV-----VTW----NIVITFYVQN 286

Query: 675 TAHPEAQAVYKYLEQLVLEMRKLGYV 700
               EA  ++  L+Q  ++   + +V
Sbjct: 287 ENFGEAVRLFGRLQQDGIKANDITFV 312


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 253/786 (32%), Positives = 412/786 (52%), Gaps = 79/786 (10%)

Query: 11  TLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYAR 70
           T AN    +L  C   N I     + +HAH++ +    + +     + +   S+ L YA 
Sbjct: 10  TAANTILEKLSFCKSLNHI-----KQLHAHILRTVINHKLNSFLFNLSVSSSSINLSYAL 64

Query: 71  TLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNG 130
            +F  IP P                                 +++ +N  +   S +S  
Sbjct: 65  NVFSSIPSPP--------------------------------ESIVFNPFLRDLSRSSEP 92

Query: 131 HAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNA 190
            A I  ++ +R    + D F+F  +L A++  V    + M++H    K  T     V   
Sbjct: 93  RATILFYQRIRHVGGRLDQFSFLPILKAVSK-VSALFEGMELHGVAFKIATLCDPFVETG 151

Query: 191 LISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDG 250
            + +Y  C           +  AR VFDEM  RD ++W TM+  Y +   +D A +  + 
Sbjct: 152 FMDMYASC---------GRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEE 202

Query: 251 MSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
           M ++                       +  DE    +++SAC  +G  R  + ++ +L+ 
Sbjct: 203 MKDS----------------------NVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIE 240

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
            + +        +  ALVT+Y   G ++ AR+ F +M  R+L    A++S Y   G +D+
Sbjct: 241 NDVR----MDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDD 296

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
           A+ +F+   +++L+ WT MIS   ++ Y +E L++F +M   G KP   +    I++CA 
Sbjct: 297 AQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACAN 356

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
           LG L+  + +H+ +  +G +S LS  NALI MYA+CG ++A   VF  MP  + VSW++M
Sbjct: 357 LGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSM 416

Query: 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
           I AL  HG  + A+ L+ +M +E + P+ +TF+ VL  C+H+GLV+EG++ F +M   Y 
Sbjct: 417 INALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYN 476

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
           I P  +HY   +DL  RA    EA +VI+S+P   +  IW +L++ CRIHG ++LG  AA
Sbjct: 477 ITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAA 536

Query: 611 EQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVF 670
           +++ +L P H G  VL+SN+YA   RW+D   +R++M ++ V KE G S I+ + K H F
Sbjct: 537 KRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEF 596

Query: 671 LVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAF 730
           L+ D  H ++  +Y  L+++V +++  GYVPD   VL D+E ++K+  +  HSEKLA+ F
Sbjct: 597 LIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCF 656

Query: 731 GLM------KLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKC 784
           GLM      +      +R++KNLR+C DCH  FK +SKV  REI+VRD  RFH +++G C
Sbjct: 657 GLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLC 716

Query: 785 SCGDYW 790
           SC DYW
Sbjct: 717 SCRDYW 722


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 244/677 (36%), Positives = 376/677 (55%), Gaps = 45/677 (6%)

Query: 26  RNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVART 85
           R+    S AR+ HA ++ S       ++N L+  Y +  +L  AR +FDEIP  +  +  
Sbjct: 28  RSAPNLSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYN 87

Query: 86  TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA--AIELFRDMRRD 143
            L++AY+       AR +F   P    D   YNA++ A + +  GHA  A+     M  D
Sbjct: 88  ALLSAYARLGRPDEARALFEAIPDP--DQCSYNAVVAALARHGRGHAADALRFLAAMHAD 145

Query: 144 DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
           D   + ++F S LSA A   ++ +   Q+H  V +S       + +AL+ +Y KC     
Sbjct: 146 DFVLNAYSFASALSACA-AEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPE- 203

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
                    ARRVFD MPER+ +SW +++T Y +N  +  A                   
Sbjct: 204 --------DARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLF--------------- 240

Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
                  ++M+      DE T +SV+SACA     R G+QVHA++++ +        + +
Sbjct: 241 -------VEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRD---DMVL 290

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
           NNALV +Y KCG+  EAR IF+ MP R +VS  +IL+ Y  +  +++A+ +F  M E+N+
Sbjct: 291 NNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNV 350

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
           ++W V+I+  AQNG  EE ++LF Q++ +   P  Y +   + +C  +  L+ G+Q H  
Sbjct: 351 IAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVH 410

Query: 444 LVHSGY------DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           ++  G+      +S +  GN+L+ MY + G ++    VF  M   D+VSWNAMI    Q+
Sbjct: 411 VLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQN 470

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
           G    A+ L+E+ML     PD +T + VLSAC H+GLV EGRRYF +M   +GI P  DH
Sbjct: 471 GRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDH 530

Query: 558 YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           Y   +DLL RAG   EA+++I+ +P +P + +W +LL  CR+H N++LG   A +LF+L 
Sbjct: 531 YTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLLGACRLHKNVELGEWTAGRLFELD 590

Query: 618 PHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAH 677
           P ++G YVLLSNMYA +G+W +  RVR+ M+DRGV K+PGCSWIE+  K++VFL  D  H
Sbjct: 591 PQNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDRGVSKQPGCSWIEIGRKMNVFLARDKRH 650

Query: 678 PEAQAVYKYLEQLVLEM 694
           P    ++  L  + +EM
Sbjct: 651 PCRNEIHNTLRIIQMEM 667



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 138/509 (27%), Positives = 220/509 (43%), Gaps = 90/509 (17%)

Query: 5   NADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSL 64
           +AD     A  +AS L  C       S     VH  +  S      HI + L+D+Y K  
Sbjct: 143 HADDFVLNAYSFASALSACAAEK--DSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCE 200

Query: 65  KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
           +   AR +FD +P+ ++V+                                 +N++IT Y
Sbjct: 201 RPEDARRVFDAMPERNVVS---------------------------------WNSLITCY 227

Query: 125 SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLF 184
             N     A+ LF +M      PD  T +SV+SA A +   +++  Q+H  +VK      
Sbjct: 228 EQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLA-ADREGRQVHAHMVKCDRLRD 286

Query: 185 TSVL-NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDA 243
             VL NAL+ +Y KC  +           AR +FD MP R  +S T+++TGY K+  ++ 
Sbjct: 287 DMVLNNALVDMYAKCGRT---------WEARCIFDSMPSRSIVSETSILTGYAKSANVED 337

Query: 244 AREFLDGMSENVGVAWNALISGYVH--RELKMLMLRIQLD-------EFTYTSVISACAN 294
           A+     M E   +AWN LI+ Y     E + + L +QL         +TY +V++AC N
Sbjct: 338 AQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGN 397

Query: 295 SGLFRLGKQVHAYLLRTEAKPT--PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL 352
               +LG+Q H ++L+   +    PE  + V N+LV +Y K G +++   +F +M  RD 
Sbjct: 398 IADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDN 457

Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
           VSWNA++  Y                               AQNG  ++ L LF +M   
Sbjct: 458 VSWNAMIVGY-------------------------------AQNGRAKDALHLFERMLCS 486

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQ-LHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
              P      G +++C   G ++ GR+  H+     G   S      ++ +  R G ++ 
Sbjct: 487 NENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKE 546

Query: 472 ANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
           A  + N MP   DSV W +++ A   H N
Sbjct: 547 AEELINDMPMEPDSVLWASLLGACRLHKN 575


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/627 (37%), Positives = 362/627 (57%), Gaps = 53/627 (8%)

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS----- 264
           +  A+ VFD M +RD  SW T+++ Y K   ++      D M     V++N LI+     
Sbjct: 74  LSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMPYRDSVSYNTLIACFASN 133

Query: 265 GYVHRELKMLMLRIQLD-----EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
           G+  + LK+L +R+Q D     ++++ + + AC+     R GKQ+H  ++  +       
Sbjct: 134 GHSGKALKVL-VRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTF- 191

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVS--------------- 364
              V NA+  +Y KCG +++AR +F+ M ++++VSWN ++S YV                
Sbjct: 192 ---VRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQ 248

Query: 365 --------------------AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
                                G +D+A++LF  + +++ + WT MI G AQNG  E+   
Sbjct: 249 LSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEICWTTMIVGYAQNGREEDAWM 308

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           LF  M     KP  Y  +  ++SCA L +L +G+ +H ++V  G D+S+   +AL+ MY 
Sbjct: 309 LFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYC 368

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           +CGV   A  +F TMP  + ++WNAMI    Q+G    A+ LYE+M +E   PD ITF+ 
Sbjct: 369 KCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQENFKPDNITFVG 428

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584
           VLSAC +A +VKEG++YF+++   +GI P  DHYA  I LL R+G   +A D+I  +P +
Sbjct: 429 VLSACINADMVKEGQKYFDSI-SEHGIAPTLDHYACMITLLGRSGSVDKAVDLIQGMPHE 487

Query: 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVR 644
           P+  IW  LL+ C   G++     AA  LF+L P +AG Y++LSN+YA  GRW D A VR
Sbjct: 488 PNYRIWSTLLSVC-AKGDLKNAELAASHLFELDPRNAGPYIMLSNLYAACGRWKDVAVVR 546

Query: 645 KLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTK 704
            LM+++  KK    SW+EV NKVH F+ +D  HPE   +Y  L +L+  ++++GY PDT 
Sbjct: 547 SLMKEKNAKKFAAYSWVEVGNKVHRFVSEDHYHPEVGKIYGELNRLISILQQIGYNPDTN 606

Query: 705 FVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGG-ATVRVLKNLRICGDCHNAFKFMSKV 763
            VLH++  ++K  ++S HSEKLA+AF L++ P G A +R++KN+R+C DCH   KF S  
Sbjct: 607 IVLHNVGEEEKFRSISYHSEKLALAFALIRKPNGVAPIRIIKNIRVCDDCHVFMKFASIT 666

Query: 764 VGREIVVRDGKRFHHFRDGKCSCGDYW 790
           + R I++RD  RFHHF  GKCSC D W
Sbjct: 667 ISRPIIMRDSNRFHHFFGGKCSCNDNW 693



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 125/493 (25%), Positives = 226/493 (45%), Gaps = 92/493 (18%)

Query: 34  ARSVHAHMISSGFKPREHII-NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           A+ + +HM  + F+P++  I N+L+ +Y K  KL  A+ +FD + + D+ +  TL++AY+
Sbjct: 41  AKRLQSHMELNLFQPKDSFIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYA 100

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
               V+    +F++ P   RD+V YN +I  ++ N +   A+++   M+ D  +P  ++ 
Sbjct: 101 KMGMVENLHVVFDQMPY--RDSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSH 158

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            + L A + ++ + +   Q+H  +V +  G  T V NA+  +Y KC           +  
Sbjct: 159 VNALQACSQLL-DLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGD---------IDK 208

Query: 213 ARRVFDEMPERDELSWTTMMTGYVK------------------------------NDY-- 240
           AR +FD M +++ +SW  M++GYVK                              N Y  
Sbjct: 209 ARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFR 268

Query: 241 ---LDAAREFLDGMSENVGVAWNALISGYVH--RELKMLML-------RIQLDEFTYTSV 288
              +D AR     + +   + W  +I GY    RE    ML        ++ D +T +S+
Sbjct: 269 CGRVDDARNLFIKLPKKDEICWTTMIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSM 328

Query: 289 ISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
           +S+CA       G+ VH  ++        + S+ V++ALV +Y KCG   +AR IF  MP
Sbjct: 329 VSSCAKLASLYHGQVVHGKVVVMGI----DNSMLVSSALVDMYCKCGVTLDARVIFETMP 384

Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQ 408
            R++++WNA++  Y   G + EA +L+E M++ N                          
Sbjct: 385 IRNVITWNAMILGYAQNGQVLEALTLYERMQQEN-------------------------- 418

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
                FKP +  F G +++C     ++ G++    +   G   +L     +IT+  R G 
Sbjct: 419 -----FKPDNITFVGVLSACINADMVKEGQKYFDSISEHGIAPTLDHYACMITLLGRSGS 473

Query: 469 VEAANCVFNTMPN 481
           V+ A  +   MP+
Sbjct: 474 VDKAVDLIQGMPH 486



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/258 (32%), Positives = 149/258 (57%), Gaps = 3/258 (1%)

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           YT ++  CA +  F   K++ +++     +P   F   ++N L+ LY K GK+++A+++F
Sbjct: 25  YTRLVLHCARANDFIQAKRLQSHMELNLFQPKDSF---IHNQLLHLYAKFGKLSDAQNVF 81

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           + M +RD+ SWN +LSAY   G+++    +F+ M  R+ +S+  +I+  A NG+  + LK
Sbjct: 82  DNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMPYRDSVSYNTLIACFASNGHSGKALK 141

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           +  +M+ +GF+P  Y+   A+ +C+ L  L +G+Q+H ++V +    +    NA+  MYA
Sbjct: 142 VLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYA 201

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           +CG ++ A  +F+ M + + VSWN MI+   + GN    I L+ +M   G+ PD +T   
Sbjct: 202 KCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSN 261

Query: 525 VLSACNHAGLVKEGRRYF 542
           VL+A    G V + R  F
Sbjct: 262 VLNAYFRCGRVDDARNLF 279


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 262/761 (34%), Positives = 399/761 (52%), Gaps = 89/761 (11%)

Query: 40   HMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEI--PQPDIV---ARTTLIAAYSAS 94
            HM+ +G  P +     +++    S  L + R +   I   + D V     T L++ Y   
Sbjct: 427  HMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKC 486

Query: 95   DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
             ++  A  +F + PL  R  V +N M+ AY+ N     A     +M +  V PD  +FTS
Sbjct: 487  GSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTS 546

Query: 155  VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
            VLS+      +E Q ++M   +++SG      +  ALIS++ +C           +  AR
Sbjct: 547  VLSSC--YCSQEAQVLRM--CILESGY-RSACLETALISMHGRCRE---------LEQAR 592

Query: 215  RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
             VF+EM   D +SWT M++   +N      R+F                     +E+  L
Sbjct: 593  SVFNEMDHGDVVSWTAMVSATAEN------RDF---------------------KEVHNL 625

Query: 275  MLRIQL-----DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
              R+QL     D+FT  + +  C  S    LGK +HA +         E  L        
Sbjct: 626  FRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVIHACV--------TEIGL-------- 669

Query: 330  LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
                               E D+   NA+L+ Y + G   EA S FE M+ R+L+SW +M
Sbjct: 670  -------------------EADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIM 710

Query: 390  ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
             +  AQ G  +E + LF QM+LEG KP    F+  +    G   + +G+  HA    SG 
Sbjct: 711  SAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGL 770

Query: 450  DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
            DS +S    L+ +YA+CG ++ A  +F    +   V  NA+I AL QHG    A++++ +
Sbjct: 771  DSDVSVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVKMFWK 830

Query: 510  MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
            M +EG+ PD  T ++++SAC HAG+V+EG   F TM   +GI P  +HYA F+DLL RAG
Sbjct: 831  MQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAG 890

Query: 570  KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629
            +   A+ +I  +PF+ +  +W +LL  C++ G+ +LG + A+++ +L PH++  +V+LSN
Sbjct: 891  QLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSN 950

Query: 630  MYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQ 689
            +Y   G+W DA   RK M D  VK  PG SW E+  +VH F+  D +HP+   +Y  L++
Sbjct: 951  IYCATGKWKDADVDRKKMLDENVKNAPGMSWFEIGKQVHEFVAGDRSHPKTDEIYVVLDK 1010

Query: 690  LVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRI 749
            L L MR+ GY  D      D+E + KE AL  HSE++A+AFGL+  P   T++++KNLR+
Sbjct: 1011 LELLMRRAGYEADKGL---DVEDELKEKALGYHSERIAIAFGLIATPPETTLKIVKNLRV 1067

Query: 750  CGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            CGDCH A K++S V+GREI+VRD  RFHHF +G CSC D W
Sbjct: 1068 CGDCHTATKYISMVMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 148/568 (26%), Positives = 246/568 (43%), Gaps = 111/568 (19%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMR-DTVFYNAMITAYSHNSNGHAAIELFR 138
           D +A   LI  Y    + + A  +F     +   D V +NAMI+A         A+ +FR
Sbjct: 264 DPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFR 323

Query: 139 DMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
            +R + ++P++ T  ++L+ALA    +       H  + +SG      + NA+IS+Y KC
Sbjct: 324 RLRLEGMRPNSVTLITILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKC 383

Query: 199 VSSPFVSSRSLMGAARRVFDEMPER-DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
                        AA  VF  +  + D +SW TM+                 G SE+   
Sbjct: 384 ---------GFFSAAWAVFRRIRWKCDVISWNTML-----------------GASEDRK- 416

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
           ++  +++ + H    ML+  I  ++ ++ ++++AC+NS     G+++H+ +L T  +   
Sbjct: 417 SFGKVVNTFHH----MLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLIL-TRRRDYV 471

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQM--PERDLVSWNAILSAYVSAGLIDEAKSLF 375
           E S  V   LV++Y KCG ++EA  +F +M  P R LV+WN +L AY      D +K  F
Sbjct: 472 ESS--VATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQN---DRSKEAF 526

Query: 376 EAMRER-------NLLSWTVMISG-------------LAQNGYG---------------- 399
            A+ E        + LS+T ++S              + ++GY                 
Sbjct: 527 GALMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMCILESGYRSACLETALISMHGRCR 586

Query: 400 --EEGLKLFSQM-------------------------------RLEGFKPCDYAFAGAIT 426
             E+   +F++M                               +LEG  P  +  A  + 
Sbjct: 587 ELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLD 646

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
           +C     L  G+ +HA +   G ++ ++  NAL+ MY+ CG    A   F TM   D VS
Sbjct: 647 TCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVS 706

Query: 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546
           WN M AA  Q G    A+ L+ QM  EG+ PD++TF T L+    + LV +G + F  + 
Sbjct: 707 WNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDG-KLFHALA 765

Query: 547 GPYGIPPGEDHYARFIDLLCRAGKFSEA 574
              G+          + L  + GK  EA
Sbjct: 766 AESGLDSDVSVATGLVKLYAKCGKLDEA 793



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 146/595 (24%), Positives = 244/595 (41%), Gaps = 117/595 (19%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHII--NRLIDIYCKSLKLVYART 71
             Y + LQ C   N     LA+  HAH + +     +H+   N LI++Y +   L  A  
Sbjct: 26  QEYTALLQSCVDSN----DLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHA 81

Query: 72  LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           +F ++ + ++V+ T LI+A                           NA   A++      
Sbjct: 82  IFSKMEERNVVSWTALISA---------------------------NAQCGAFAR----- 109

Query: 132 AAIELFRDMR-RDDVKPDNFTFTSVLSALA----LIVEEEKQCMQMHCTVVKSGTGLFTS 186
            A  LFR M       P+++T  ++L+A A    L +      M     + ++ T   T 
Sbjct: 110 -AFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTA-TL 167

Query: 187 VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND--YLDAA 244
           V NA+I++Y KC S         +  A  VF  +PE+D +SWT M   Y +    Y DA 
Sbjct: 168 VGNAMINMYAKCGS---------LEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDAL 218

Query: 245 REFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304
           R F                     RE  ML+  +  +  T+ + + AC +    R G  +
Sbjct: 219 RIF---------------------RE--MLLQPLAPNVITFITALGACTS---LRDGTWL 252

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVS 364
           H+ L     + +  F    +NAL+ +Y KCG    A  +F  M  R              
Sbjct: 253 HSLL----HEASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASR-------------- 294

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
                         +E +L+SW  MIS   + G   + + +F ++RLEG +P        
Sbjct: 295 --------------QELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITI 340

Query: 425 ITSCAGLGA-LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NV 482
           + + A  G      R  H ++  SGY   +  GNA+I+MYA+CG   AA  VF  +    
Sbjct: 341 LNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKC 400

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
           D +SWN M+ A     +  + +  +  ML  GI P++++F+ +L+AC+++  +  GR+  
Sbjct: 401 DVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIH 460

Query: 543 ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI-WEALLAG 596
             +                + +  + G  SEA+ V   +P    + + W  +L  
Sbjct: 461 SLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGA 515



 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 153/344 (44%), Gaps = 51/344 (14%)

Query: 265 GYVHRELKMLMLRIQLDEFT----YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
           G + R+L  L   +++D       YT+++ +C +S     GK  H  +    A    E  
Sbjct: 4   GSIIRQLCSLSGAVRVDRAADLQEYTALLQSCVDSNDLAKGKHAHELI----ANAGLEQH 59

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           L + N L+ +Y +CG + EA  IF++M ER++VSW A++SA    G    A +LF  M  
Sbjct: 60  LFLGNCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQCGAFARAFALFRTM-- 117

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
                  ++ S  A                     P  Y     + +CA    L  GR +
Sbjct: 118 -------LLESSAA---------------------PNSYTLVAMLNACANSRDLAIGRSI 149

Query: 441 HAQLVHSGYDSSLSA----GNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           HA +   G + + +     GNA+I MYA+CG +E A  VF  +P  D VSW AM  A  Q
Sbjct: 150 HAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQ 209

Query: 497 HGNG-ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH-GPYGIPPG 554
                  A+ ++ +ML + + P+ ITF+T L AC     +++G      +H    G  P 
Sbjct: 210 ERRFYPDALRIFREMLLQPLAPNVITFITALGACTS---LRDGTWLHSLLHEASLGFDPL 266

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI--WEALLAG 596
             +    I++  + G +  A  V  ++  +    +  W A+++ 
Sbjct: 267 ASN--ALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISA 308


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 259/721 (35%), Positives = 386/721 (53%), Gaps = 88/721 (12%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           ++   ++L+  YS    +  AR +F+      ++ + +N+MI  YS + +   A EL R 
Sbjct: 333 ELKVNSSLLDMYSKCGYLCEARVLFDTNE---KNVISWNSMIGGYSKDRDFRGAFELLRK 389

Query: 140 MRRDD-VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
           M+ +D VK +  T  +VL     + EEE Q                              
Sbjct: 390 MQMEDKVKVNEVTLLNVLP----VCEEEIQ------------------------------ 415

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
               F+  + + G A R      + DEL     + GY K   L  A     GM   +  +
Sbjct: 416 ----FLKLKEIHGYALR--HGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSS 469

Query: 259 WNALISGYVHR-------ELKMLMLR--IQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
           WNALI G+V         +L +LM    ++ D FT  S++SACA       GK++H  +L
Sbjct: 470 WNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSML 529

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLID 369
           R       EF   +  +LV+LY +CGK                               I 
Sbjct: 530 RN-GFELDEF---ICISLVSLYVQCGK-------------------------------IL 554

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
            AK  F+ M E+NL+ W  MI+G +QN +  + L +F QM      P + +  GA+ +C+
Sbjct: 555 LAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACS 614

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
            + AL  G++LH   V S          +LI MYA+CG +E +  +F+ +     V+WN 
Sbjct: 615 QVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNV 674

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY 549
           +I   G HG+G +AIEL++ M   G  PD +TF+ +L+ACNHAGLV EG  Y   M   +
Sbjct: 675 LITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLF 734

Query: 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609
           GI P  +HYA  +D+L RAG+ +EA ++++ LP KP + IW +LL+ CR + ++D+G + 
Sbjct: 735 GIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKV 794

Query: 610 AEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHV 669
           A +L +L P  A  YVL+SN YA LG+WD+  ++R+ M++ G++K+ GCSWIE+  KV  
Sbjct: 795 ANKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSR 854

Query: 670 FLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVA 729
           FLV D +  ++  + +   +L  ++ K+GY PDT  VLH++E D+K   L  HSEKLA++
Sbjct: 855 FLVGDESLLQSMKIQQTWIELEKKINKIGYKPDTSCVLHELEEDEKIKILRNHSEKLAIS 914

Query: 730 FGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
           FGL+    G T+RV KNLRIC DCHNA K +SK+  REI+VRD KRFHHF++G CSCGDY
Sbjct: 915 FGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKIDKREIIVRDNKRFHHFKNGFCSCGDY 974

Query: 790 W 790
           W
Sbjct: 975 W 975



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 142/564 (25%), Positives = 243/564 (43%), Gaps = 83/564 (14%)

Query: 43  SSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP-----QPDIVARTTLIAAYSASDNV 97
           SS  KP++ +I  L+ +  +   +   R + + I      Q D+V  T L+  YS  D+ 
Sbjct: 87  SSNSKPKQ-LIGLLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSP 145

Query: 98  KLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM-RRDDVKPDNFTFTSVL 156
             +  +FN +  + ++   +NA+++ Y  NS    A+ +F +M    +  PDNFT   V+
Sbjct: 146 YDSCLVFNAS--RRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVI 203

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
            A  + V + +    +H   +K+       V NALI++Y K     FV S      A +V
Sbjct: 204 KA-CVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGK---FGFVES------AVKV 253

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLML 276
           FD+MP+R+ +SW ++M   ++N   + +     G           L++G           
Sbjct: 254 FDKMPQRNLVSWNSVMYACLENGVFEESYGLFKG-----------LLNGDE--------- 293

Query: 277 RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
            +  D  T  +VI  CA  G  RLG   H   L+          L VN++L+ +Y KCG 
Sbjct: 294 GLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCG----ELKVNSSLLDMYSKCGY 349

Query: 337 VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
           + EAR +F+   E++++SWN+++  Y       + +  FE +R+  +             
Sbjct: 350 LCEARVLFDT-NEKNVISWNSMIGGYSKD---RDFRGAFELLRKMQM------------- 392

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY-DSSLSA 455
              E+ +K+     L     C+                   +++H   +  G+  S    
Sbjct: 393 ---EDKVKVNEVTLLNVLPVCEEEI-----------QFLKLKEIHGYALRHGFIQSDELV 438

Query: 456 GNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI 515
            NA +  YA+CG +  A  VF  M +    SWNA+I    Q+G   +A++LY  M   G+
Sbjct: 439 ANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGL 498

Query: 516 LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY---GIPPGEDHYARFIDLLCRAGKFS 572
            PD  T  ++LSAC     +  G+     +HG     G    E      + L  + GK  
Sbjct: 499 EPDLFTIASLLSACARLKSLSCGKE----IHGSMLRNGFELDEFICISLVSLYVQCGKIL 554

Query: 573 EAKDVIDSLPFKPSAPIWEALLAG 596
            AK   D++  K +   W  ++ G
Sbjct: 555 LAKLFFDNMEEK-NLVCWNTMING 577



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 106/460 (23%), Positives = 208/460 (45%), Gaps = 77/460 (16%)

Query: 64  LKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITA 123
           LK ++   L     Q D +     +A Y+   ++  A  +F     KM  +  +NA+I  
Sbjct: 419 LKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSS--WNALIGG 476

Query: 124 YSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC-MQMHCTVVKSGTG 182
           +  N     A++L+  MR   ++PD FT  S+LSA A +  +   C  ++H +++++G  
Sbjct: 477 HVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARL--KSLSCGKEIHGSMLRNGFE 534

Query: 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY-L 241
           L   +  +L+S+YV+C        + L+  A+  FD M E++ + W TM+ G+ +N++  
Sbjct: 535 LDEFICISLVSLYVQC-------GKILL--AKLFFDNMEEKNLVCWNTMINGFSQNEFPF 585

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
           DA   F                        +ML  +I  DE +    + AC+     RLG
Sbjct: 586 DALDMF-----------------------HQMLSSKIWPDEISIIGALGACSQVSALRLG 622

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
           K++H + +++      E S  V  +L+ +Y KCG + ++++IF+++  +  V+WN +++ 
Sbjct: 623 KELHCFAVKSH---LTEHSF-VTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITG 678

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
           Y                                 +G+G + ++LF  M+  GF+P    F
Sbjct: 679 Y-------------------------------GIHGHGRKAIELFKSMQNAGFRPDSVTF 707

Query: 422 AGAITSCAGLGALENGRQLHAQLVH-SGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
              +T+C   G +  G +   Q+    G    L     ++ M  R G +  A  + N +P
Sbjct: 708 IALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELP 767

Query: 481 NV-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           +  DS  W++++++   + +     ++  ++L+ G  PD+
Sbjct: 768 DKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELG--PDK 805



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 140/331 (42%), Gaps = 69/331 (20%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           S  + +H  M+ +GF+  E I   L+ +Y +  K++ A+  FD + + ++V   T     
Sbjct: 519 SCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNT----- 573

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                                       MI  +S N     A+++F  M    + PD  +
Sbjct: 574 ----------------------------MINGFSQNEFPFDALDMFHQMLSSKIWPDEIS 605

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
               L A +  V   +   ++HC  VKS     + V  +LI +Y KC           M 
Sbjct: 606 IIGALGACSQ-VSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKC---------GCME 655

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            ++ +FD +  + E++W  ++TGY  + +   A E    M +N G               
Sbjct: 656 QSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSM-QNAG--------------- 699

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                  + D  T+ ++++AC ++GL   G +   YL + ++    +  L     +V + 
Sbjct: 700 ------FRPDSVTFIALLTACNHAGLVAEGLE---YLGQMQSLFGIKPKLEHYACVVDML 750

Query: 332 WKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
            + G++NEA ++ N++P++ D   W+++LS+
Sbjct: 751 GRAGRLNEALELVNELPDKPDSRIWSSLLSS 781


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 258/765 (33%), Positives = 404/765 (52%), Gaps = 97/765 (12%)

Query: 107 TPLKMRD--TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE 164
           TP +  D     YNA I  +    +   A+EL    ++ +++    T+ SVL   A + +
Sbjct: 57  TPTRTIDHQVTDYNAKILHFCQLGDLENAMELVCMCQKSELETK--TYGSVLQLCAGL-K 113

Query: 165 EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERD 224
                 ++H  +  +  G+  ++   L+S Y  C           +   RRVFD M +++
Sbjct: 114 SLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGD---------LKEGRRVFDTMEKKN 164

Query: 225 ELSWTTMMTGYVK-NDYLDA-------------------AREFLDGMSENVGVAWNALIS 264
              W  M++ Y K  D+ ++                   A E  D + +   ++WN++IS
Sbjct: 165 VYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMIS 224

Query: 265 GYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           GYV   L         +M+ L I +D  T  SV+  CANSG   LGK VH+  +++  + 
Sbjct: 225 GYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFER 284

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
              FS    N L+ +Y KCG ++ A  +F +M ER++VSW ++++ Y   G  D A  L 
Sbjct: 285 RINFS----NTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILL 340

Query: 376 EAMRER---------------------------------------NLLSWTVMISGLAQN 396
           + M +                                        NL     ++   A+ 
Sbjct: 341 QQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKC 400

Query: 397 GYGEEGLKLFSQMRLEG----------FKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
           G  E    +FS M ++            KP     A  + +CA L ALE G+++H  ++ 
Sbjct: 401 GSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIHGYILR 460

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
           +GY S     NAL+ +Y +CGV+  A  +F+ +P+ D VSW  MIA  G HG G  AI  
Sbjct: 461 NGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIAT 520

Query: 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
           + +M   GI PD ++F+++L AC+H+GL+++G R+F  M   + I P  +HYA  +DLL 
Sbjct: 521 FNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLS 580

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626
           R G  S+A   I++LP  P A IW ALL GCRI+ +I+L  + AE++F+L P + G YVL
Sbjct: 581 RTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVL 640

Query: 627 LSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLV-DDTAHPEAQAVYK 685
           L+N+YA   + ++  R+R+ +  +G++K PGCSWIE+  +V++F+  ++++HP ++ +  
Sbjct: 641 LANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIES 700

Query: 686 YLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLK 745
            L+++  +M++ GY P TK+ L + +  QKE AL  HSEKLA+AFGL+ LP   T+RV K
Sbjct: 701 LLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTK 760

Query: 746 NLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           NLR+CGDCH   KFMSK   REIV+RD  RFHHF+DG CSC  +W
Sbjct: 761 NLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 137/553 (24%), Positives = 228/553 (41%), Gaps = 119/553 (21%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y S LQLC     +T    + VH+ + S+     E +  +L+  Y     L   R +FD 
Sbjct: 102 YGSVLQLCAGLKSLTD--GKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDT 159

Query: 76  IPQPDIVARTTLIAAYSASDNVK--------------------LAREMFNKTPLKMRDTV 115
           + + ++     +++ Y+   + K                     A E+F+K  L  RD +
Sbjct: 160 MEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDK--LCDRDVI 217

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA----LIVEEEKQCMQ 171
            +N+MI+ Y  N      + +++ M    +  D  T  SVL   A    L + +      
Sbjct: 218 SWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGK-----A 272

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H   +KS      +  N L+ +Y KC           +  A RVF++M ER+ +SWT+M
Sbjct: 273 VHSLAIKSSFERRINFSNTLLDMYSKCGD---------LDGALRVFEKMGERNVVSWTSM 323

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           + GY ++ + D A   L  M E  GV                     +LD    TS++ A
Sbjct: 324 IAGYTRDGWSDGAIILLQQM-EKEGV---------------------KLDVVAITSILHA 361

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           CA SG    GK VH Y+           +L V NAL+ +Y KCG +  A  +F+ M  +D
Sbjct: 362 CARSGSLDNGKDVHDYIKANNMAS----NLFVCNALMDMYAKCGSMEGANSVFSTMVVKD 417

Query: 352 LVSW-------------------------------------------------NAILSAY 362
           ++SW                                                 NA++  Y
Sbjct: 418 IISWNTMVGELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLY 477

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
           V  G++  A+ LF+ +  ++L+SWTVMI+G   +GYG E +  F++MR  G +P + +F 
Sbjct: 478 VKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFI 537

Query: 423 GAITSCAGLGALENG-RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
             + +C+  G LE G R  +        +  L     ++ + +R G +  A     T+P 
Sbjct: 538 SILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPI 597

Query: 482 V-DSVSWNAMIAA 493
             D+  W A++  
Sbjct: 598 APDATIWGALLCG 610


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/624 (36%), Positives = 361/624 (57%), Gaps = 41/624 (6%)

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H  +VK G      + N L++VY KC ++           A +VFDEMP RD ++W ++
Sbjct: 25  LHAHIVKLGIVQCCPLANTLVNVYGKCGAASH---------ALQVFDEMPHRDHIAWASV 75

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           +T   + +        L G +                         ++ D+F +++++ A
Sbjct: 76  LTALNQAN--------LSGKT-------------LSVFSSVGSSSGLRPDDFVFSALVKA 114

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           CAN G    G+QVH + + +E          V ++LV +Y KCG +N A+ +F+ +  ++
Sbjct: 115 CANLGSIDHGRQVHCHFIVSEYANDE----VVKSSLVDMYAKCGLLNSAKAVFDSIRVKN 170

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
            +SW A++S Y  +G  +EA  LF  +  +NL SWT +ISG  Q+G G E   +F++MR 
Sbjct: 171 TISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRR 230

Query: 412 EGFKPCD-YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
           E     D    +  + +CA L A   GRQ+H  ++  G+DS +   NALI MYA+C  V 
Sbjct: 231 ERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVI 290

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
           AA  +F+ M + D VSW ++I  + QHG   +A+ LY+ M+  G+ P+ +TF+ ++ AC+
Sbjct: 291 AAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACS 350

Query: 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590
           H G V++GR  F++M   YGI P   HY   +DLL R+G   EA+++I ++PF P  P W
Sbjct: 351 HVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTW 410

Query: 591 EALLAGCRIHGNIDLGIQAAEQL---FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647
            ALL+ C+  G   +GI+ A+ L   F+L      TY+LLSN+YA+   W   +  R+ +
Sbjct: 411 AALLSACKRQGRGQMGIRIADHLVSSFKLKD--PSTYILLSNIYASASLWGKVSEARRKL 468

Query: 648 RDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMR-KLGYVPDTKFV 706
            +  V+K+PG S +EV  +  VF   +T+HP  + +++ L++L  EMR + GYVPDT ++
Sbjct: 469 GEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWI 528

Query: 707 LHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGR 766
           LHDM+  +KE  L  HSE+ AVA+GL+K   G  +R++KNLR+CGDCH   K +S++  R
Sbjct: 529 LHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITER 588

Query: 767 EIVVRDGKRFHHFRDGKCSCGDYW 790
           EI+VRD  R+HHF+ GKCSC D+W
Sbjct: 589 EIIVRDATRYHHFKGGKCSCNDFW 612



 Score =  182 bits (463), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 141/550 (25%), Positives = 244/550 (44%), Gaps = 96/550 (17%)

Query: 12  LANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYART 71
           L   Y  QLQLC     +T+  A+++HAH++  G      + N L+++Y K     +A  
Sbjct: 2   LIPHYLHQLQLCARNRTLTT--AKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQ 59

Query: 72  LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           +FDE+P  D +A  +++ A + +                                N +G 
Sbjct: 60  VFDEMPHRDHIAWASVLTALNQA--------------------------------NLSGK 87

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
                        ++PD+F F++++ A A +   +    Q+HC  + S       V ++L
Sbjct: 88  TLSVFSSVGSSSGLRPDDFVFSALVKACANLGSID-HGRQVHCHFIVSEYANDEVVKSSL 146

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           + +Y KC          L+ +A+ VFD +  ++ +SWT M++GY K+   + A E    +
Sbjct: 147 VDMYAKC---------GLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRIL 197

Query: 252 SENVGVAWNALISGYVHR-----------ELKMLMLRIQLDEFTYTSVISACANSGLFRL 300
                 +W ALISG+V             E++   + I LD    +S++ ACAN      
Sbjct: 198 PVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDI-LDPLVLSSIVGACANLAASIA 256

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           G+QVH  ++        +  + ++NAL+ +Y KC  V  A+DIF++M  RD+VSW     
Sbjct: 257 GRQVHGLVIALGF----DSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSW----- 307

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
                                     T +I G+AQ+G  E+ L L+  M   G KP +  
Sbjct: 308 --------------------------TSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVT 341

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
           F G I +C+ +G +E GR+L   +    G   SL     L+ +  R G+++ A  + +TM
Sbjct: 342 FVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTM 401

Query: 480 P-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL---TVLSACNHAGLV 535
           P   D  +W A+++A  + G G   I + + ++    L D  T++    + ++ +  G V
Sbjct: 402 PFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKV 461

Query: 536 KEGRRYFETM 545
            E RR    M
Sbjct: 462 SEARRKLGEM 471



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 90/195 (46%), Gaps = 13/195 (6%)

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
           CA    L   + LHA +V  G        N L+ +Y +CG    A  VF+ MP+ D ++W
Sbjct: 13  CARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAW 72

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGIL-PDRITFLTVLSACNHAGLVKEGRRYFETMH 546
            +++ AL Q     + + ++  +     L PD   F  ++ AC + G +  GR+    +H
Sbjct: 73  ASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQ----VH 128

Query: 547 GPYGIPP---GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNI 603
             + +      E   +  +D+  + G  + AK V DS+  K +   W A+++G    G  
Sbjct: 129 CHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTIS-WTAMVSGYAKSGR- 186

Query: 604 DLGIQAAEQLFQLMP 618
               + A +LF+++P
Sbjct: 187 ---KEEALELFRILP 198


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 269/778 (34%), Positives = 398/778 (51%), Gaps = 113/778 (14%)

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA--IELFRDMRRDDVKPDNF 150
           AS ++  A  +F++ P    D   YN +I AYS +S   AA  + L+R M R  V P+N+
Sbjct: 69  ASGHLSRAHHLFDQIPSP--DVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126

Query: 151 TFTSVLSALALIVEEE-KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           TF   L A + + +    + +  H         LF S   AL+ +YVKC   P       
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVS--TALLDMYVKCACLP------- 177

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
              A  +F  MP RD ++W  M+ GY  +     A   L  M                  
Sbjct: 178 --DAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSM------------------ 217

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT------EAKPTPEFSLPV 323
             +M M R++ +  T  +++   A  G    G  VHAY +R        +K      + +
Sbjct: 218 --QMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLL 275

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
             AL+ +Y KCG +  AR +F+ MP R+ V+W+A++  +V    + +A  LF+AM  + L
Sbjct: 276 GTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGL 335

Query: 384 --LSWTVMISGL--------------------------------------AQNGYGEEGL 403
             LS T + S L                                      A+ G  ++ +
Sbjct: 336 CFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAI 395

Query: 404 KLFSQMRL--------------------EGF-----------KPCDYAFAGAITSCAGLG 432
            LF +M +                    E F           +P        I +C+ L 
Sbjct: 396 ALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLA 455

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
           AL++GR  H  ++  G  S  S  NALI MYA+CG ++ +  VFN MP+ D VSWN MIA
Sbjct: 456 ALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIA 515

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552
             G HG G  A  L+ +M   G  PD +TF+ +LSAC+H+GLV EG+ +F  M   YG+ 
Sbjct: 516 GYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLT 575

Query: 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
           P  +HY   +DLL R G   EA + I S+P +    +W ALL  CR++ NIDLG + +  
Sbjct: 576 PRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRM 635

Query: 613 LFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLV 672
           + +L P   G +VLLSN+Y+  GR+D+AA VR + + +G KK PGCSWIE++  +H F+ 
Sbjct: 636 IQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVG 695

Query: 673 DDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGL 732
            D +HP++  +Y+ L+ +++ ++KLGY PDT FVL D+E ++KE AL  HSEKLA+A+G+
Sbjct: 696 GDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGI 755

Query: 733 MKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           + L    T+ V KNLR+CGDCH   K +S +  R I+VRD  RFHHF++G+CSCGD+W
Sbjct: 756 LSLSEDKTIFVTKNLRVCGDCHTVIKHISLLKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 15/111 (13%)

Query: 28  PITSSLA-----RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIV 82
           P  S LA     R  H  +I  G      I N LID+Y K  ++  +R +F+ +P  DIV
Sbjct: 449 PACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIV 508

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMR------DTVFYNAMITAYSHN 127
           +  T+IA Y      K A  +F    L+M       D V +  +++A SH+
Sbjct: 509 SWNTMIAGYGIHGLGKEATALF----LEMNNLGFPPDGVTFICLLSACSHS 555


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/624 (37%), Positives = 353/624 (56%), Gaps = 66/624 (10%)

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND-YLDAAREFLDGMSENVGVAWNALI 263
           ++R   G AR VFD +PER+ + +  M+  Y+ N  Y DA   F D            ++
Sbjct: 78  AARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRD------------MV 125

Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
           SG               D +TY  V+ AC+ S   R+G Q+H  + +       + +L V
Sbjct: 126 SG-----------GFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGL----DLNLFV 170

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA------------ 371
            N L+ LY KCG + EAR + ++M  +D+VSWN++++ Y      D+A            
Sbjct: 171 GNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQ 230

Query: 372 -------------------------KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
                                    + +F  + +++L+SW VMIS   +N    + + L+
Sbjct: 231 KPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLY 290

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
            QM     +P     A  + +C  L AL  GR++H  +       ++   N+LI MYARC
Sbjct: 291 LQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARC 350

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G +E A  VF+ M   D  SW ++I+A G  G G  A+ L+ +M   G  PD I F+ +L
Sbjct: 351 GCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAIL 410

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
           SAC+H+GL+ EG+ YF+ M   Y I P  +H+A  +DLL R+G+  EA ++I  +P KP+
Sbjct: 411 SACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPN 470

Query: 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKL 646
             +W ALL+ CR++ N+D+GI AA++L QL P  +G YVLLSN+YA  GRW +   +R L
Sbjct: 471 ERVWGALLSSCRVYSNMDIGILAADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSL 530

Query: 647 MRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFV 706
           M+ R ++K PG S +E++N+VH FL  DT HP+++ +Y+ L  LV +M++LGYVP T   
Sbjct: 531 MKRRRIRKMPGISNVELNNQVHTFLAGDTYHPQSKEIYEELSVLVGKMKELGYVPKTDSA 590

Query: 707 LHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGR 766
           LHD+E + KE  L+ HSEKLA+ F ++     + +R+ KNLR+CGDCH A K +SK+V R
Sbjct: 591 LHDVEEEDKECHLAVHSEKLAIVFAILN-TQESPIRITKNLRVCGDCHIAAKLISKIVQR 649

Query: 767 EIVVRDGKRFHHFRDGKCSCGDYW 790
           EIV+RD  RFHHF+DG CSCGDYW
Sbjct: 650 EIVIRDTNRFHHFKDGICSCGDYW 673



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 149/569 (26%), Positives = 254/569 (44%), Gaps = 123/569 (21%)

Query: 24  DPRNPIT------SSLARSVHAHMISSGFKPRE-----HIINRLIDIY--CKSLKLVYAR 70
           +P +P+T       +L  S+   ++S    P+       ++ +++D Y   K+LK V+++
Sbjct: 2   NPFHPLTHQFPKLQALVSSIRKSLVS----PQNPVLVLELLGKVLDQYPDIKTLKNVHSK 57

Query: 71  TL---FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHN 127
                F E P   I     L+ AY+A     LAR +F+  P   R+ +FYN MI +Y +N
Sbjct: 58  VFNLSFHENPSLGI----KLMRAYAARGEPGLARNVFDVIP--ERNVIFYNVMIRSYMNN 111

Query: 128 SNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSV 187
                A+ +FRDM      PD++T+  VL A +   +  +  +Q+H  V K G  L   V
Sbjct: 112 HLYDDALLVFRDMVSGGFSPDHYTYPCVLKACS-CSDNLRIGLQLHGAVFKVGLDLNLFV 170

Query: 188 LNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKN----DYLDA 243
            N LI++Y KC   P          AR V DEM  +D +SW +M+ GY +N    D LD 
Sbjct: 171 GNGLIALYGKCGCLP---------EARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDI 221

Query: 244 AREFLDGM--------------------SENV--------------GVAWNALISGYVHR 269
            RE +DG+                    SENV               V+WN +IS Y+  
Sbjct: 222 CRE-MDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVYMKN 280

Query: 270 E---------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
                     L+M    ++ D  T  SV+ AC +     LG+++H Y+ R +  P    +
Sbjct: 281 SMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCP----N 336

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           + + N+L+ +Y +CG + +A+ +F++M  RD+ SW +++SAY                  
Sbjct: 337 MLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAY------------------ 378

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
                      G+   GY    + LF++M+  G  P   AF   +++C+  G L  G+  
Sbjct: 379 -----------GMTGQGYN--AVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFY 425

Query: 441 HAQLVHSGYDSSLSAGNA-LITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHG 498
             Q+      + +    A L+ +  R G V+ A  +   MP   +   W A++++   + 
Sbjct: 426 FKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYS 485

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLS 527
           N    I   +++L+  + P+   +  +LS
Sbjct: 486 NMDIGILAADKLLQ--LAPEESGYYVLLS 512



 Score = 45.1 bits (105), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 74/162 (45%), Gaps = 8/162 (4%)

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           + +H+++ +  +  + S G  L+  YA  G    A  VF+ +P  + + +N MI +   +
Sbjct: 52  KNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNN 111

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG---PYGIPPG 554
                A+ ++  M+  G  PD  T+  VL AC+ +  ++ G +    +HG     G+   
Sbjct: 112 HLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQ----LHGAVFKVGLDLN 167

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
                  I L  + G   EA+ V+D +  K     W +++AG
Sbjct: 168 LFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVS-WNSMVAG 208


>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
 gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
          Length = 631

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 254/701 (36%), Positives = 373/701 (53%), Gaps = 72/701 (10%)

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
           YS  D    A+ +   TP   R  V + A+I+    N    +A+  F  MRR+++KP++F
Sbjct: 2   YSKLDLPNPAQLLLQLTP--TRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDF 59

Query: 151 TFTSVLSA-LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           TF     A  AL +    +  Q+H   +K         L  +   +V C +    S   L
Sbjct: 60  TFPCAFKASTALCLPFAGK--QIHAIALK---------LGQINDKFVGCSAFDMYSKTGL 108

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
              A+R+FDEMP R+   W      Y+ N  LD             G A +  I      
Sbjct: 109 KFEAQRLFDEMPPRNVAVWNA----YISNAVLDG----------RPGKAIDKFI------ 148

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
             +   +  + D  T+ + ++ACA++    LG+Q+H  ++R+      E  + V N ++ 
Sbjct: 149 --EFRRVGGEPDLITFCAFLNACADARCLDLGRQLHGLVIRSGF----EGDVSVANGIID 202

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           +Y KC +V                               + A+ +F  M  RN +SW  M
Sbjct: 203 VYGKCKEV-------------------------------ELAEMVFNGMGRRNSVSWCTM 231

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           ++   QN   E+   +F   R EG +  DY  +  I++ AG+  LE GR +HA  V +  
Sbjct: 232 VAACEQNDEKEKACVVFLMGRKEGIELTDYMVSSVISAYAGISGLEFGRSVHALAVKACV 291

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
           +  +  G+AL+ MY +CG +E    VF+ MP  + VSWNAMI+     G+   A+ L+E+
Sbjct: 292 EGDIFVGSALVDMYGKCGSIEDCEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEE 351

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
           M  E +  + +T + VLSAC+  G VK G   FE+M   Y I PG +HYA   D+L RAG
Sbjct: 352 MQSEAV-ANYVTLICVLSACSRGGAVKLGNEIFESMRDRYRIEPGAEHYACIADMLGRAG 410

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629
               A + +  +P +P+  +W ALL  CR++G  +LG  AA+ LF+L P  +G +VLLSN
Sbjct: 411 MVERAYEFVQKMPIRPTISVWGALLNACRVYGEPELGKIAADNLFKLDPKDSGNHVLLSN 470

Query: 630 MYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQ 689
           M+A  GRWD+A  VRK M+D G+KK  GCSW+   NKVHVF   DT+H     +   L +
Sbjct: 471 MFAAAGRWDEATLVRKEMKDVGIKKGAGCSWVTAKNKVHVFQAKDTSHERNSEIQAMLVK 530

Query: 690 LVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRI 749
           L  EM+  GY+PDT + L+D+E ++K   +  HSEK+A+AFGL+ LP G  +R+ KNLRI
Sbjct: 531 LRTEMQAAGYMPDTNYALYDLEEEEKMTEVGYHSEKIALAFGLIALPPGVPIRITKNLRI 590

Query: 750 CGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           CGDCH+AFKF+S +VGREI+VRD  RFH FRD +CSC D+W
Sbjct: 591 CGDCHSAFKFISGIVGREIIVRDNNRFHRFRDSQCSCRDFW 631



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 134/331 (40%), Gaps = 72/331 (21%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R +H  +I SGF+    + N +ID+Y K                              
Sbjct: 177 LGRQLHGLVIRSGFEGDVSVANGIIDVYGKC----------------------------- 207

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
               V+LA  +FN   +  R++V +  M+ A   N     A  +F   R++ ++  ++  
Sbjct: 208 --KEVELAEMVFNG--MGRRNSVSWCTMVAACEQNDEKEKACVVFLMGRKEGIELTDYMV 263

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
           +SV+SA A I   E     +H   VK+       V +AL+ +Y KC S         +  
Sbjct: 264 SSVISAYAGISGLEFG-RSVHALAVKACVEGDIFVGSALVDMYGKCGS---------IED 313

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
             +VF EMPER+ +SW  M++GY     +D A    + M           ++ YV     
Sbjct: 314 CEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQSEA-------VANYV----- 361

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL-RTEAKPTPEFSLPVNNALVTLY 331
                      T   V+SAC+  G  +LG ++   +  R   +P  E    + + L    
Sbjct: 362 -----------TLICVLSACSRGGAVKLGNEIFESMRDRYRIEPGAEHYACIADML---- 406

Query: 332 WKCGKVNEARDIFNQMPERDLVS-WNAILSA 361
            + G V  A +   +MP R  +S W A+L+A
Sbjct: 407 GRAGMVERAYEFVQKMPIRPTISVWGALLNA 437


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 263/739 (35%), Positives = 394/739 (53%), Gaps = 114/739 (15%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           L+A Y+    V  ++ +F       RD V +N MI+++S +     A+  FR M  + V+
Sbjct: 237 LMAMYAKLGRVDDSKALFES--FVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVE 294

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS-VLNALISVYVKCVSSPFVS 205
            D  T  SVL A + + E      ++H  V+++   +  S V +AL+ +Y  C       
Sbjct: 295 LDGVTIASVLPACSHL-ERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQ----- 348

Query: 206 SRSLMGAARRVFDE-MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
               + + RRVFD  +  R EL                                WNA+IS
Sbjct: 349 ----VESGRRVFDHILGRRIEL--------------------------------WNAMIS 372

Query: 265 GYVHREL--KMLMLRIQL--------DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
           GY    L  K L+L I++        +  T  SV+ AC +   F   + +H Y ++   K
Sbjct: 373 GYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFK 432

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
                   V NAL+ +Y + GK                               +D ++++
Sbjct: 433 EDRY----VQNALMDMYSRMGK-------------------------------MDISETI 457

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RLEG----------------FKPC 417
           F++M  R+ +SW  MI+G   +G     L L  +M R+E                 +KP 
Sbjct: 458 FDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPN 517

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
                  +  CA L A+  G+++HA  + +   S ++ G+AL+ MYA+CG +  +  VFN
Sbjct: 518 AITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFN 577

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG-----ILPDRITFLTVLSACNHA 532
            MPN + ++WN +I A G HG G  A+EL++ M+ E        P+ +TF+TV +AC+H+
Sbjct: 578 EMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHS 637

Query: 533 GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK-PSAPIWE 591
           GL+ EG   F  M   +G+ P  DHYA  +DLL RAG+  EA ++++++P +      W 
Sbjct: 638 GLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWS 697

Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
           +LL  CRIH N++LG  AA+ L  L P+ A  YVLLSN+Y++ G W+ A  VRK MR  G
Sbjct: 698 SLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMG 757

Query: 652 VKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDME 711
           VKKEPGCSWIE  ++VH F+  D +HP+++ ++ +LE L  +MRK GYVPDT  VLH+++
Sbjct: 758 VKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVD 817

Query: 712 SDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVR 771
            D+KE  L  HSEKLA+AFG++  P G T+RV KNLR+C DCH A KF+SK++ REI+VR
Sbjct: 818 EDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVR 877

Query: 772 DGKRFHHFRDGKCSCGDYW 790
           D +RFHHF++G CSCGDYW
Sbjct: 878 DVRRFHHFKEGTCSCGDYW 896



 Score =  175 bits (444), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 141/517 (27%), Positives = 243/517 (47%), Gaps = 90/517 (17%)

Query: 100 AREMFNKTPLK----MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV 155
           A  + +KTP K     R T  +   + + + +++   AI  + +M     +PDNF F +V
Sbjct: 39  ASPLTSKTPPKPTSPSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAV 98

Query: 156 LSALALIVEEEKQCMQMHCTVVKSGTGLFT-SVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           L A++ + ++ K   Q+H   VK G G  + +V N L+++Y KC           +G   
Sbjct: 99  LKAVSGL-QDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGG---------IGDVC 148

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
           +VFD + +RD++SW + +    + +  + A E    M                       
Sbjct: 149 KVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQ---------------------- 186

Query: 275 MLRIQLDEFTYTSVISACANSGL---FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
           M  ++L  FT  SV  AC+N G+    RLGKQ+H Y LR   + T  F+   NNAL+ +Y
Sbjct: 187 MENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKT--FT---NNALMAMY 241

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            K G+V++++ +F    +RD+VSWN ++S++                             
Sbjct: 242 AKLGRVDDSKALFESFVDRDMVSWNTMISSF----------------------------- 272

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG--Y 449
             +Q+    E L  F  M LEG +      A  + +C+ L  L+ G+++HA ++ +    
Sbjct: 273 --SQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLI 330

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
           ++S   G+AL+ MY  C  VE+   VF+ +       WNAMI+   ++G   +A+ L+ +
Sbjct: 331 ENSF-VGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIE 389

Query: 510 MLK-EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG--EDHYAR--FIDL 564
           M+K  G+LP+  T  +V+ AC H     E     E++HG Y +  G  ED Y +   +D+
Sbjct: 390 MIKVAGLLPNTTTMASVMPACVHC----EAFSNKESIHG-YAVKLGFKEDRYVQNALMDM 444

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
             R GK   ++ + DS+  +     W  ++ G  + G
Sbjct: 445 YSRMGKMDISETIFDSMEVRDRVS-WNTMITGYVLSG 480



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 138/566 (24%), Positives = 238/566 (42%), Gaps = 102/566 (18%)

Query: 81  IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
           +    TL+  Y     +    ++F++  +  RD V +N+ I A         A+E FR M
Sbjct: 128 VTVANTLVNMYGKCGGIGDVCKVFDR--ITDRDQVSWNSFIAALCRFEKWEQALEAFRAM 185

Query: 141 RRDDVKPDNFTFTSVLSALAL--IVEEEKQCMQMHCTVVKSG-TGLFTSVLNALISVYVK 197
           + ++++  +FT  SV  A +   ++   +   Q+H   ++ G    FT+  NAL+++Y K
Sbjct: 186 QMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTFTN--NALMAMYAK 243

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
                       +  ++ +F+   +RD +SW TM++ + ++D    A  F          
Sbjct: 244 L---------GRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFR-------- 286

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                          M++  ++LD  T  SV+ AC++     +GK++HAY+LR       
Sbjct: 287 --------------LMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIEN 332

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
            F   V +ALV +Y  C +V   R +F+ +  R +  WNA++S Y               
Sbjct: 333 SF---VGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGY--------------- 374

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RLEGFKPCDYAFAGAITSCAGLGALEN 436
                           A+NG  E+ L LF +M ++ G  P     A  + +C    A  N
Sbjct: 375 ----------------ARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSN 418

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
              +H   V  G+       NAL+ MY+R G ++ +  +F++M   D VSWN MI     
Sbjct: 419 KESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVL 478

Query: 497 HGNGARAIELYEQMLK-EGIL----------------PDRITFLTVLSACNHAGLVKEGR 539
            G  + A+ L  +M + E                   P+ IT +TVL  C     + +G+
Sbjct: 479 SGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGK 538

Query: 540 R---YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
               Y         I  G    +  +D+  + G  + ++ V + +P K +   W  L+  
Sbjct: 539 EIHAYAIRNMLASDITVG----SALVDMYAKCGCLNLSRRVFNEMPNK-NVITWNVLIMA 593

Query: 597 CRIHGNIDLGIQAAEQLFQLMPHHAG 622
           C +HG    G +A E LF+ M   AG
Sbjct: 594 CGMHGK---GEEALE-LFKNMVAEAG 615



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 170/407 (41%), Gaps = 95/407 (23%)

Query: 36  SVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASD 95
           S+H + +  GFK   ++ N L+D+Y +  K+  + T+FD                     
Sbjct: 421 SIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDS-------------------- 460

Query: 96  NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD----------- 144
                        +++RD V +N MIT Y  +     A+ L  +M+R +           
Sbjct: 461 -------------MEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDND 507

Query: 145 ------VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
                  KP+  T  +VL   A +    K   ++H   +++      +V +AL+ +Y KC
Sbjct: 508 DEKGGPYKPNAITLMTVLPGCAALAAIAKG-KEIHAYAIRNMLASDITVGSALVDMYAKC 566

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
                      +  +RRVF+EMP ++ ++W  ++     +   + A E    M    G  
Sbjct: 567 ---------GCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRG 617

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE--AKPT 316
             A                 + +E T+ +V +AC++SGL   G  +  Y ++ +   +PT
Sbjct: 618 GEA-----------------KPNEVTFITVFAACSHSGLISEGLNLF-YRMKHDHGVEPT 659

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLV-SWNAILSA-----YVSAGLID 369
            +    V    V L  + G++ EA ++ N MP E D V +W+++L A      V  G + 
Sbjct: 660 SDHYACV----VDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEV- 714

Query: 370 EAKSLFEAMRERNLLSWTVMISGL-AQNGYGEEGLKLFSQMRLEGFK 415
            AK+L     E N+ S  V++S + +  G   + +++   MR  G K
Sbjct: 715 AAKNLLHL--EPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVK 759


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 225/511 (44%), Positives = 315/511 (61%), Gaps = 37/511 (7%)

Query: 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
           D+ T  +   AC    L   GKQ+HA+ +    K   +  L VN+ ++ +Y KCG +  A
Sbjct: 29  DQITLATAAKACGCLVLLDQGKQIHAHAI----KAGFDSDLHVNSGILDMYIKCGDMVNA 84

Query: 341 RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGE 400
             +FN                Y+SA                + ++WT MISG   NG  +
Sbjct: 85  GIVFN----------------YISAP---------------DDVAWTSMISGCVDNGNED 113

Query: 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALI 460
           + L+++ +MR     P +Y FA  I + + + ALE GRQLHA ++     S    G +L+
Sbjct: 114 QALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLV 173

Query: 461 TMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
            MYA+CG +E A  +F  M NV +++ WNAM+  L QHGN   A+ L++ M   GI PDR
Sbjct: 174 DMYAKCGNIEDAYRLFKKM-NVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDR 232

Query: 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579
           ++F+ +LSAC+HAGL  E   Y  +M   YGI P  +HY+  +D L RAG   EA  VI+
Sbjct: 233 VSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIE 292

Query: 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639
           ++PFK SA I  ALL  CRI G+++ G + A +LF L P  +  YVLLSN+YA   RWDD
Sbjct: 293 TMPFKASASINRALLGACRIQGDVEXGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDD 352

Query: 640 AARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGY 699
               RK+M+ + VKK+PG SWI+V N +H+F+VDD +HP+A  +Y  +E+++  +R+ GY
Sbjct: 353 VTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGY 412

Query: 700 VPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKF 759
           VPDT+FVL D+E ++KE +L  HSEKLA+A+GL+  P   T+RV+KNLR+CGDCHNA K+
Sbjct: 413 VPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKY 472

Query: 760 MSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +SKV  REIV+RD  RFHHFRDG CSCGDYW
Sbjct: 473 ISKVFEREIVLRDANRFHHFRDGVCSCGDYW 503



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 162/382 (42%), Gaps = 69/382 (18%)

Query: 120 MITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKS 179
           M+  Y   ++G  A+ELF  + +   K D  T  +   A   +V  + Q  Q+H   +K+
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLD-QGKQIHAHAIKA 59

Query: 180 GTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND 239
           G      V + ++ +Y+KC           M  A  VF+ +   D+++WT+M++G V N 
Sbjct: 60  GFDSDLHVNSGILDMYIKCGD---------MVNAGIVFNYISAPDDVAWTSMISGCVDNG 110

Query: 240 YLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFR 299
             D A                       HR   M   R+  DE+T+ ++I A +      
Sbjct: 111 NEDQALRIY-------------------HR---MRQSRVMPDEYTFATLIKASSCVTALE 148

Query: 300 LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAIL 359
            G+Q+HA +++ +    P     V  +LV +Y KCG + +A  +F +M  R++  WNA+L
Sbjct: 149 QGRQLHANVIKLDCVSDP----FVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAML 204

Query: 360 SAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY 419
                 G  +EA +LF++M+                                 G +P   
Sbjct: 205 VGLAQHGNAEEAVNLFKSMKSH-------------------------------GIEPDRV 233

Query: 420 AFAGAITSCAGLGALENGRQ-LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478
           +F G +++C+  G      + LH+     G +  +   + L+    R G+V+ A+ V  T
Sbjct: 234 SFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIET 293

Query: 479 MPNVDSVSWN-AMIAALGQHGN 499
           MP   S S N A++ A    G+
Sbjct: 294 MPFKASASINRALLGACRIQGD 315



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 115/235 (48%), Gaps = 10/235 (4%)

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG 448
           M+ G      G++ L+LFS +   G K      A A  +C  L  L+ G+Q+HA  + +G
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAG 60

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
           +DS L   + ++ MY +CG +  A  VFN +   D V+W +MI+    +GN  +A+ +Y 
Sbjct: 61  FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYH 120

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY--ARFIDLLC 566
           +M +  ++PD  TF T++ A +    +++GR+    +     +    D +     +D+  
Sbjct: 121 RMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANV---IKLDCVSDPFVGTSLVDMYA 177

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621
           + G   +A  +   +  +  A +W A+L G   HGN     + A  LF+ M  H 
Sbjct: 178 KCGNIEDAYRLFKKMNVRNIA-LWNAMLVGLAQHGN----AEEAVNLFKSMKSHG 227



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 135/342 (39%), Gaps = 69/342 (20%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +HAH I +GF    H+ + ++D+Y K   +V A  +F+ I  PD VA T+       
Sbjct: 49  GKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTS------- 101

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                                     MI+    N N   A+ ++  MR+  V PD +TF 
Sbjct: 102 --------------------------MISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFA 135

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           +++ A + +   E Q  Q+H  V+K        V  +L+ +Y KC +         +  A
Sbjct: 136 TLIKASSCVTALE-QGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGN---------IEDA 185

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
            R+F +M  R+   W  M+ G  ++   + A      M  +                   
Sbjct: 186 YRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSH------------------- 226

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
               I+ D  ++  ++SAC+++G   L  + + YL         E  +   + LV    +
Sbjct: 227 ---GIEPDRVSFIGILSACSHAG---LTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGR 280

Query: 334 CGKVNEARDIFNQMPERDLVSWN-AILSAYVSAGLIDEAKSL 374
            G V EA  +   MP +   S N A+L A    G ++  K +
Sbjct: 281 AGLVQEADKVIETMPFKASASINRALLGACRIQGDVEXGKRV 322


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 251/711 (35%), Positives = 389/711 (54%), Gaps = 67/711 (9%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+   T L+  Y+   ++  AR++F+  P +   T  +N+MI+AYS +     A  +F+ 
Sbjct: 44  DVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGT--WNSMISAYSISERSGEAFFIFQR 101

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M+ +  + D  TF S+L A  +  E  +    +  ++ ++   L   V  ALI++Y +C 
Sbjct: 102 MQHEGERCDRVTFLSILDA-CVNPENLQHGKHVRESISETSFELDLFVGTALITMYARC- 159

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                  RS   AA+ VF  M +++ ++W+ ++T +  + +   A  +   M +      
Sbjct: 160 -------RSPENAAQ-VFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQE----- 206

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                G +   +  + L   L+ FT          SGL  L +    +LL TE     + 
Sbjct: 207 -----GILPNRVTFISL---LNGFT--------TPSGLEELSR---IHLLITE--HGLDD 245

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
           +  ++NALV +Y +C                               G +D A+ + + M 
Sbjct: 246 TTTMSNALVNVYGRC-----------------------------ETGELDVAEVILQEMD 276

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
           E+ + +W V+I+G   +G   E L+ + +++LE        F   + +C    +L  G+ 
Sbjct: 277 EQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKM 336

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           +H+  V  G DS +   NAL  MY++CG +E A  +F++MP   +VSWN M+ A  QHG 
Sbjct: 337 IHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGE 396

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA 559
               ++L  +M +EG+  + ITF++VLS+C+HAGL+ EG +YF ++    GI    +HY 
Sbjct: 397 SEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYG 456

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
             +DLL RAGK  EA+  I  +P +P    W +LL  CR+H ++D G  AA +L +L P 
Sbjct: 457 CLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGACRVHKDLDRGKLAARKLLELDPG 516

Query: 620 HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPE 679
           ++   V+LSN+Y+  G W +AA++R+ M  R VKK PG S I+V NKVH F V DT+HP 
Sbjct: 517 NSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPR 576

Query: 680 AQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGA 739
           A  +Y  +E+L   MR+ GYVPDTK VLHD++ +QKE  L+ HSEKLA+AFGL+  P  +
Sbjct: 577 AAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPEKS 636

Query: 740 TVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           ++ + KNLR+C DCH A KF+SK+ GREIVVRD  RFHHFRDG CSC DYW
Sbjct: 637 SLHIFKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 687



 Score =  149 bits (375), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 118/470 (25%), Positives = 203/470 (43%), Gaps = 83/470 (17%)

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEE--KQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           M  + VK +  TF +VL++   +V+ +  ++   +H  V +S   L   V  AL++ Y K
Sbjct: 1   MLLEGVKANVITFLNVLNS---VVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTK 57

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C S         +  AR+VFD MP R   +W +M++ Y               +SE  G 
Sbjct: 58  CGS---------LTDARKVFDGMPCRSVGTWNSMISAY--------------SISERSGE 94

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
           A+      ++ + ++    R   D  T+ S++ AC N    + GK V   +  T    + 
Sbjct: 95  AF------FIFQRMQHEGERC--DRVTFLSILDACVNPENLQHGKHVRESISET----SF 142

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
           E  L V  AL+T+Y +C     A  +F +M +++L++W+AI++A+               
Sbjct: 143 ELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAF--------------- 187

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
                           A +G+  E L+ F  M+ EG  P    F   +        LE  
Sbjct: 188 ----------------ADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEEL 231

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARC--GVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            ++H  +   G D + +  NAL+ +Y RC  G ++ A  +   M      +WN +I    
Sbjct: 232 SRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYT 291

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
            HG    A+E Y+++  E I  D++TF++VL+AC  +  + EG+     M     +  G 
Sbjct: 292 LHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGK-----MIHSNAVECGL 346

Query: 556 DHYA----RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
           D          ++  + G    A+ + DS+P + SA  W  +L     HG
Sbjct: 347 DSDVIVKNALTNMYSKCGSMENARRIFDSMPIR-SAVSWNGMLQAYAQHG 395



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 109/253 (43%), Gaps = 19/253 (7%)

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
           M LEG K     F   + S     AL  G+ +H+ +  S +   +    AL+  Y +CG 
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 469 VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
           +  A  VF+ MP     +WN+MI+A         A  ++++M  EG   DR+TFL++L A
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120

Query: 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHY-------ARFIDLLCRAGKFSEAKDVIDSL 581
           C +   ++ G+   E++         E  +          I +  R      A  V   +
Sbjct: 121 CVNPENLQHGKHVRESI--------SETSFELDLFVGTALITMYARCRSPENAAQVFGRM 172

Query: 582 PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ--LMPHHAGTYVLLSNMYANLGRWDD 639
             K +   W A++     HG+    ++    + Q  ++P+   T++ L N +      ++
Sbjct: 173 KQK-NLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRV-TFISLLNGFTTPSGLEE 230

Query: 640 AARVRKLMRDRGV 652
            +R+  L+ + G+
Sbjct: 231 LSRIHLLITEHGL 243


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 255/718 (35%), Positives = 384/718 (53%), Gaps = 79/718 (11%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+   T L+  Y+   + + A  +F + P   RD V +NAM+  Y+ +      I     
Sbjct: 163 DLFVSTALVDVYAKCASFRHAATVFRRMP--ARDVVAWNAMLAGYALHGKYSDTIACLLL 220

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMH------CTVVKSGTGLFTSVLNALIS 193
           M+ DD  P+  T  ++L  LA       Q   +H      C++     G+   V  AL+ 
Sbjct: 221 MQ-DDHAPNASTLVALLPLLAQ-HGALSQGRAVHAYSVRACSLHDHKDGVL--VGTALLD 276

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK-NDYLDAAREFLDGMS 252
           +Y KC    + S         RVF+ M  R+E++W+ ++ G+V     L+A   F D ++
Sbjct: 277 MYAKCGHLVYAS---------RVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLA 327

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
           + +                        L   +  S + ACAN     LGKQ+HA L ++ 
Sbjct: 328 QGLCF----------------------LSPTSVASALRACANLSDLCLGKQLHALLAKSG 365

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
                                                 DL + N++LS Y  AGLID+A 
Sbjct: 366 L-----------------------------------HTDLTAGNSLLSMYAKAGLIDQAT 390

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
           +LF+ M  ++ +S++ ++SG  QNG  +E  ++F +M+    +P        I +C+ L 
Sbjct: 391 TLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLA 450

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
           AL++G+  H  ++  G  S  S  NALI MYA+CG ++ +  +F+ MP  D VSWN MIA
Sbjct: 451 ALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIA 510

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552
             G HG G  A  L+  M  +   PD +TF+ ++SAC+H+GLV EG+R+F  M   YGI 
Sbjct: 511 GYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGIT 570

Query: 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
           P  +HY   +DLL R G   EA   I  +P K    +W ALL  CR+H NIDLG Q +  
Sbjct: 571 PRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQVSSM 630

Query: 613 LFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLV 672
           + QL P   G +VLLSN+++  GR+D+AA VR + +++G KK PGCSWIE++  +H F+ 
Sbjct: 631 IQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSLHAFIG 690

Query: 673 DDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGL 732
            D +H ++  +Y+ L+ +++++ KLGY  DT FVL D+E ++KE AL  HSEKLA+AFG+
Sbjct: 691 GDRSHAQSSEIYQELDNILVDINKLGYRADTSFVLQDVEEEEKEKALLYHSEKLAIAFGV 750

Query: 733 MKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           + L    T+ V KNLR+CGDCH   K+M+ V  R I+VRD  RFHHF++G+CSCGD+W
Sbjct: 751 LTLSEDKTIFVTKNLRVCGDCHTVIKYMTLVRKRAIIVRDANRFHHFKNGQCSCGDFW 808



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 153/379 (40%), Gaps = 54/379 (14%)

Query: 241 LDAAREFLDGMSENVGVAWNALISGYVHR---------ELKMLMLRIQLDEFTYTSVISA 291
           L  AR   D +       +NALI  Y  R                  Q + +T+  V+ A
Sbjct: 79  LSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVLKA 138

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           C+     R  + VH +     A+      L V+ ALV +Y KC     A  +F +MP RD
Sbjct: 139 CSALLDLRSARAVHCH----AARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARD 194

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
           +V+WNA+L+ Y   G   +  +    M++ +  + + +++           L L +Q   
Sbjct: 195 VVAWNAMLAGYALHGKYSDTIACLLLMQDDHAPNASTLVA----------LLPLLAQH-- 242

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV-----HSGYDSSLSAGNALITMYARC 466
                               GAL  GR +HA  V     H   D  L  G AL+ MYA+C
Sbjct: 243 --------------------GALSQGRAVHAYSVRACSLHDHKDGVL-VGTALLDMYAKC 281

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI-LPDRITFLTV 525
           G +  A+ VF  M   + V+W+A++      G    A  L++ ML +G+      +  + 
Sbjct: 282 GHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASA 341

Query: 526 LSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP 585
           L AC +   +  G++    +    G+          + +  +AG   +A  + D +  K 
Sbjct: 342 LRACANLSDLCLGKQ-LHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKD 400

Query: 586 SAPIWEALLAGCRIHGNID 604
           +   + AL++G   +G  D
Sbjct: 401 TVS-YSALVSGYVQNGKAD 418



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 106/271 (39%), Gaps = 46/271 (16%)

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
           CG ++ AR +F+Q+P   +  +NA++ AY                               
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAY------------------------------- 104

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL 453
           +  G         S  R    +P +Y F   + +C+ L  L + R +H     +G  + L
Sbjct: 105 SLRGPALALRLYRSLRRRRLPQPNNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADL 164

Query: 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE 513
               AL+ +YA+C     A  VF  MP  D V+WNAM+A    HG  +  I     ++++
Sbjct: 165 FVSTALVDVYAKCASFRHAATVFRRMPARDVVAWNAMLAGYALHGKYSDTIACL-LLMQD 223

Query: 514 GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR--------FIDLL 565
              P+  T + +L      G + +GR     +H  Y +     H  +         +D+ 
Sbjct: 224 DHAPNASTLVALLPLLAQHGALSQGR----AVHA-YSVRACSLHDHKDGVLVGTALLDMY 278

Query: 566 CRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
            + G    A  V +++  +     W AL+ G
Sbjct: 279 AKCGHLVYASRVFEAMAVRNEV-TWSALVGG 308



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 70/341 (20%), Positives = 113/341 (33%), Gaps = 125/341 (36%)

Query: 38  HAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNV 97
           H  +I  G      I N LID+Y K  ++  +R +FD +P  DIV+  T+IA Y      
Sbjct: 459 HGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGI---- 514

Query: 98  KLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLS 157
                                        +  G  A  LF DM+    +PD+ TF  ++S
Sbjct: 515 -----------------------------HGLGKEATALFLDMKHQACEPDDVTFICLIS 545

Query: 158 ALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVF 217
           A                    S +GL T                            +R F
Sbjct: 546 AC-------------------SHSGLVTE--------------------------GKRWF 560

Query: 218 DEMPERDELS-----WTTMMTGYVKNDYLDAAREFLDGMSENVGV-AWNALISG-YVHRE 270
             M  +  ++     +  M+    +  +LD A +F+ GM     V  W AL+    VH+ 
Sbjct: 561 HMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKN 620

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
           +                            LGKQV + + +   + T  F L     L  +
Sbjct: 621 ID---------------------------LGKQVSSMIQQLGPEGTGNFVL-----LSNI 648

Query: 331 YWKCGKVNEARDI--------FNQMPERDLVSWNAILSAYV 363
           +   G+ +EA ++        F + P    +  N  L A++
Sbjct: 649 FSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSLHAFI 689


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 251/759 (33%), Positives = 392/759 (51%), Gaps = 100/759 (13%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           +L   +HAH +  GF     + + L+D+YCK  ++ YAR +FD++P              
Sbjct: 120 NLGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPD------------- 166

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                               RDTV +N MIT    N     ++++F+DM    V+ D+ T
Sbjct: 167 --------------------RDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTT 206

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             +VL A+A + +E K  M + C  +K G      VL  LISV+ KC           + 
Sbjct: 207 VATVLPAVAEM-QEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCED---------VD 256

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            AR +F  + + D +S+  +++G+  N   + A ++   +          L+SG      
Sbjct: 257 TARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFREL----------LVSGQ----- 301

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                  ++   T   +I   +  G   L   +  + +++     P     V+ AL T+Y
Sbjct: 302 -------RVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPS----VSTALTTIY 350

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            +  +++ AR +F++  E+ + +WNA++S Y  +GL + A SLF+               
Sbjct: 351 SRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQ--------------- 395

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
                           +M    F P        +++CA LGAL  G+ +H  +     + 
Sbjct: 396 ----------------EMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQ 439

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
           ++    ALI MYA+CG +  A+ +F+     ++V+WN MI   G HG G  A++L+ +ML
Sbjct: 440 NIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEML 499

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571
             G  P  +TFL+VL AC+HAGLV+EG   F  M   Y I P  +HYA  +D+L RAG+ 
Sbjct: 500 HLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQL 559

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631
            +A + I  +P +P   +W  LL  C IH + +L   A+E+LF+L P + G YVLLSN+Y
Sbjct: 560 EKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERLFELDPGNVGYYVLLSNIY 619

Query: 632 ANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLV 691
           +    +  AA VR+ ++ R + K PGC+ IEV+   HVF+  D +H +  ++Y  LE+L 
Sbjct: 620 SVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVCGDRSHSQTTSIYAKLEELT 679

Query: 692 LEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICG 751
            +MR++GY  +T   LHD+E ++KE   + HSEKLA+AFGL+    G  +R++KNLR+C 
Sbjct: 680 GKMREMGYQSETVTALHDVEEEEKELMFNVHSEKLAIAFGLITTEPGTEIRIIKNLRVCL 739

Query: 752 DCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           DCH A KF+SK+  R IVVRD  RFHHF+DG CSCGDYW
Sbjct: 740 DCHAATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 778



 Score = 49.7 bits (117), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 67/169 (39%), Gaps = 27/169 (15%)

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           + HAQL+ +GY   L+    L       G    A  +F ++P  D   +N +I       
Sbjct: 26  ETHAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGF-SFS 84

Query: 499 NGARAIELYEQMLKEGIL-PDRITFLTVLSA--------CNHAGLVKEG--RRYFETMHG 547
             A +I  Y  +LK   L PD  T+   +SA        C HA  V +G     F     
Sbjct: 85  PDASSISFYTHLLKNTTLSPDNFTYAFAISASPDDNLGMCLHAHAVVDGFDSNLFVA--- 141

Query: 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
                      +  +DL C+  + + A+ V D +P + +  +W  ++ G
Sbjct: 142 -----------SALVDLYCKFSRVAYARKVFDKMPDRDTV-LWNTMITG 178


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  451 bits (1159), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 208/510 (40%), Positives = 317/510 (62%), Gaps = 4/510 (0%)

Query: 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
           D  TY  ++ AC   G   +G Q H  ++R       +  + V N+LVT+Y   G +  A
Sbjct: 112 DNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGF----DSDVYVQNSLVTMYSTLGDIKSA 167

Query: 341 RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGE 400
             +F ++   D+VSW ++++ Y+ +G +  A+ LF+ M E+NL++W+VMISG A+N + +
Sbjct: 168 SYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFD 227

Query: 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALI 460
           + ++L+  ++ EG    +      I SCA LGALE G + H  ++ +    +L  G AL+
Sbjct: 228 KAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALV 287

Query: 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI 520
            MYARCG ++ A  VF+ +P  D++SW  +IA    HG   +A+E + +M K G+ P  I
Sbjct: 288 DMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREI 347

Query: 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580
           TF  VLSAC+H GLV+ G   FE+M   Y I P  +HY   +DLL RAGK +EA+  ++ 
Sbjct: 348 TFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNE 407

Query: 581 LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA 640
           +P KP+APIW ALL  CRIH N ++  +A + L +L P H+G YVLLSN+YA   +W++ 
Sbjct: 408 MPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELKPEHSGYYVLLSNIYARTNKWENV 467

Query: 641 ARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYV 700
             +R++M++RGV K PG +  E+D KVH F + D  HPE Q + +  E+++ ++R  GY 
Sbjct: 468 ENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIGDKTHPEIQQIERMWEEILGKIRLAGYT 527

Query: 701 PDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFM 760
            +    L D++ ++KE  +  HSEKLA+A+ +M+  G   +R++KNLR+C DCH A K +
Sbjct: 528 GNNDDALFDIDEEEKESNIHRHSEKLAIAYAIMRTKGHDPIRIVKNLRVCEDCHTATKLI 587

Query: 761 SKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           SKV  RE++VRD  RFHHF+ G CSC DYW
Sbjct: 588 SKVYERELIVRDRNRFHHFKGGACSCMDYW 617



 Score =  150 bits (378), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 111/445 (24%), Positives = 203/445 (45%), Gaps = 64/445 (14%)

Query: 66  LVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYS 125
           L+ A T+FD      + A + LI+     + +  A ++F +  ++  +   YN+ I  +S
Sbjct: 38  LIRAHTIFD------VFAASCLISISINKNLLDYAAQVFYQ--IQNPNLFIYNSFIRGFS 89

Query: 126 HNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFT 185
            + +   +   +   +R+ + PDN T+  ++ A       +   +Q H  +++ G     
Sbjct: 90  GSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLD-MGIQAHGQIIRHGFDSDV 148

Query: 186 SVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245
            V N+L+++Y         S+   + +A  VF  +   D +SWT+M+ GY+K+  + +AR
Sbjct: 149 YVQNSLVTMY---------STLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSAR 199

Query: 246 EFLDGMSENVGVAWNALISGYVHR-------ELKMLMLR--IQLDEFTYTSVISACANSG 296
           +  D M E   V W+ +ISGY          EL  L+    +  +E    SVI++CA+ G
Sbjct: 200 KLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLG 259

Query: 297 LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWN 356
              LG++ H Y+LR +       +L +  ALV +Y +CG +++A  +F+Q+P RD +SW 
Sbjct: 260 ALELGERAHDYILRNKMT----VNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWT 315

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
                                           +I+G A +GY E+ L+ FS+M   G  P
Sbjct: 316 T-------------------------------LIAGFAMHGYAEKALEYFSRMEKAGLTP 344

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCV 475
            +  F   +++C+  G +E G +L   +      +  L     ++ +  R G +  A   
Sbjct: 345 REITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKF 404

Query: 476 FNTMP-NVDSVSWNAMIAALGQHGN 499
            N MP   ++  W A++ A   H N
Sbjct: 405 VNEMPMKPNAPIWGALLGACRIHKN 429



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 158/325 (48%), Gaps = 38/325 (11%)

Query: 38  HAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNV 97
           H  +I  GF    ++ N L+ +Y     +  A  +F  I   D+V+ T+++A Y  S +V
Sbjct: 136 HGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDV 195

Query: 98  KLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLS 157
             AR++F+K P K  + V ++ MI+ Y+ NS    AIEL+  ++ + V  +     SV++
Sbjct: 196 TSARKLFDKMPEK--NLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIA 253

Query: 158 ALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVF 217
           + A +   E    + H  ++++   +   +  AL+ +Y +C S         +  A  VF
Sbjct: 254 SCAHLGALE-LGERAHDYILRNKMTVNLILGTALVDMYARCGS---------IDKAIWVF 303

Query: 218 DEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLR 277
           D++P RD LSWTT++ G+  + Y + A E+   M +          +G   RE+      
Sbjct: 304 DQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEK----------AGLTPREI------ 347

Query: 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
                 T+T+V+SAC++ GL   G ++   + R + +  P   L     +V L  + GK+
Sbjct: 348 ------TFTAVLSACSHGGLVERGLELFESMKR-DYRIEPR--LEHYGCMVDLLGRAGKL 398

Query: 338 NEARDIFNQMPER-DLVSWNAILSA 361
            EA    N+MP + +   W A+L A
Sbjct: 399 AEAEKFVNEMPMKPNAPIWGALLGA 423



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 128/285 (44%), Gaps = 39/285 (13%)

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           D+ + + ++S  ++  L+D A  +F  ++  NL  +   I G + +   ++    + Q +
Sbjct: 46  DVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSK 105

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
             G  P +  +   + +C   G+L+ G Q H Q++  G+DS +   N+L+TMY+  G ++
Sbjct: 106 RNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIK 165

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGA----------------------------- 501
           +A+ VF  +  +D VSW +M+A   + G+                               
Sbjct: 166 SASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSF 225

Query: 502 --RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR---YFETMHGPYGIPPGED 556
             +AIELY  +  EG+  +    ++V+++C H G ++ G R   Y         +  G  
Sbjct: 226 FDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILG-- 283

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
                +D+  R G   +A  V D LP +  A  W  L+AG  +HG
Sbjct: 284 --TALVDMYARCGSIDKAIWVFDQLPGR-DALSWTTLIAGFAMHG 325



 Score = 47.4 bits (111), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 100/233 (42%), Gaps = 18/233 (7%)

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           + SC  L  L   + +HA L+ +     + A + LI++     +++ A  VF  + N + 
Sbjct: 22  LESCTTLSHL---KIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNL 78

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
             +N+ I       +  ++   Y Q  + G++PD +T+  ++ AC   G +  G +    
Sbjct: 79  FIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQ---- 134

Query: 545 MHGPYGIPPG--EDHYAR--FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
            HG   I  G   D Y +   + +    G    A  V   +        W +++AG    
Sbjct: 135 AHGQI-IRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVS-WTSMVAGYIKS 192

Query: 601 GNIDLGIQAAEQLFQLMPH-HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           G+    + +A +LF  MP  +  T+ ++ + YA    +D A  +  L++  GV
Sbjct: 193 GD----VTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGV 241


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  451 bits (1159), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 254/765 (33%), Positives = 407/765 (53%), Gaps = 73/765 (9%)

Query: 36   SVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASD 95
            ++HA  + +G     +  N L+ +Y KS  + +A+ LFDEIPQ                 
Sbjct: 310  TLHALYVKNGSLQTLNPANHLLTLYAKSNNMAHAQKLFDEIPQ----------------- 352

Query: 96   NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV 155
                            R+T  +  +I+ ++   +      LFR+M+     P+ +T +SV
Sbjct: 353  ----------------RNTQTWTILISGFARAGSSEMVFNLFREMQAKGACPNQYTLSSV 396

Query: 156  LSALALIVEEEKQCMQ-MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
            L   +L  +   Q  + +H  ++++G  +   + N+++ +Y+KC          +   A 
Sbjct: 397  LKCCSL--DNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKC---------KVFEYAE 445

Query: 215  RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS-----GYVHR 269
            R+F+ M E D +SW  M+  Y++   ++ + +    +     V+WN ++      GY   
Sbjct: 446  RLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERH 505

Query: 270  ELKMLMLRI----QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
             L+ L   +    +    T++  +   ++     LG+Q+H  +L+     +  F   + +
Sbjct: 506  ALEQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHGMVLKF-GFDSDGF---IRS 561

Query: 326  ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
            +LV +Y KCG++++A  I   +P   L   NA +S         E K+         ++S
Sbjct: 562  SLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVS-------YKEPKA--------GIVS 606

Query: 386  WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
            W  M+SG   NG  E+GLK F  M  E            I++CA  G LE GR +HA + 
Sbjct: 607  WGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYVQ 666

Query: 446  HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIE 505
              G+      G++LI MY++ G ++ A  VF      + V W +MI+    HG G  AI 
Sbjct: 667  KIGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIG 726

Query: 506  LYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLL 565
            L+E+ML +GI+P+ +TFL VL+AC+HAGL++EG RYF  M   Y I PG +H    +DL 
Sbjct: 727  LFEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFRMMKDAYCINPGVEHCTSMVDLY 786

Query: 566  CRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYV 625
             RAG  ++ K+ I          +W++ L+ CR+H N+++G   +E L Q+ P   G YV
Sbjct: 787  GRAGHLTKTKNFIFKNGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYV 846

Query: 626  LLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYK 685
            LLSNM A+  RWD+AARVR LM  RGVKK+PG SWI++ +++H F++ D +HP+   +Y 
Sbjct: 847  LLSNMCASNHRWDEAARVRSLMHQRGVKKQPGQSWIQLKDQIHTFVMGDRSHPQDDEIYS 906

Query: 686  YLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLK 745
            YL+ L+  ++++GY  D K V+ D+E +Q E  +S HSEKLAV FG++       +R++K
Sbjct: 907  YLDILIGRLKEIGYSFDVKLVMQDVEEEQGEVLISHHSEKLAVVFGIINTANRTPIRIIK 966

Query: 746  NLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            NLRIC DCHN  K+ S+++ REI+VRD  RFHHF+ G CSCGDYW
Sbjct: 967  NLRICTDCHNFIKYASQLLDREIIVRDIHRFHHFKHGSCSCGDYW 1011



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 131/534 (24%), Positives = 237/534 (44%), Gaps = 82/534 (15%)

Query: 14  NRY--ASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYART 71
           N+Y  +S L+ C   N +   L + VHA M+ +G      + N ++D+Y K     YA  
Sbjct: 389 NQYTLSSVLKCCSLDNNL--QLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAER 446

Query: 72  LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           LF+ + + D+V+   +I AY  + +V+ + +MF + P K  D V +N ++          
Sbjct: 447 LFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYK--DVVSWNTIVDGLLQCGYER 504

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
            A+E    M     +    TF+  L  LA  +   +   Q+H  V+K G      + ++L
Sbjct: 505 HALEQLYCMVECGTEFSAVTFSIAL-ILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSL 563

Query: 192 ISVYVKC--VSSPFVSSRSL------MGAARRVFDEMPERDELSWTTMMTGYVKN-DYLD 242
           + +Y KC  +    +  R +       G AR  + E P+   +SW +M++GYV N  Y D
Sbjct: 564 VEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKE-PKAGIVSWGSMVSGYVWNGKYED 622

Query: 243 AAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGK 302
             + F                   + REL ++ +R      T T++ISACAN+G+   G+
Sbjct: 623 GLKTFR-----------------LMVRELVVVDIR------TVTTIISACANAGILEFGR 659

Query: 303 QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY 362
            VHAY+     K        V ++L+ +Y K G +++A  +F Q  E ++V W +++S Y
Sbjct: 660 HVHAYV----QKIGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMISGY 715

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
                                          A +G G   + LF +M  +G  P +  F 
Sbjct: 716 -------------------------------ALHGQGMHAIGLFEEMLNQGIIPNEVTFL 744

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGY--DSSLSAGNALITMYARCG-VVEAANCVF-NT 478
           G + +C+  G +E G + + +++   Y  +  +    +++ +Y R G + +  N +F N 
Sbjct: 745 GVLNACSHAGLIEEGCR-YFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTKTKNFIFKNG 803

Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL-PDRITFLTVLSACNH 531
           + ++ SV W + +++   H N      + E +L+     P     L+ + A NH
Sbjct: 804 ISHLTSV-WKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNH 856


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  451 bits (1159), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/573 (38%), Positives = 335/573 (58%), Gaps = 30/573 (5%)

Query: 244 AREFLDGMSENVGVAWNALISGY---------VHRELKMLMLRIQLDEFTYTSVISACAN 294
           AR+  D + E    +WN +  GY         V   L+ML   ++ D +TY  +      
Sbjct: 67  ARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTR 126

Query: 295 SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS 354
           S   +LG+++H +++    K   + ++  +NAL+ +Y  CG ++ AR IF+   + D+V+
Sbjct: 127 SVALQLGRELHCHVV----KYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVT 182

Query: 355 WNAILSAY-----------------VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNG 397
           WNA++S Y                 V+ G +D A+  F  M ER+ +SWT MI G  +  
Sbjct: 183 WNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLN 242

Query: 398 YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN 457
             +E L LF +M+    KP ++     +T+CA LGALE G  +   +  +   +    GN
Sbjct: 243 CYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGN 302

Query: 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
           ALI MY +CG VE A  +FNT+P  D  +W AM+  L  +G G  A+ ++ QMLK  + P
Sbjct: 303 ALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTP 362

Query: 518 DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577
           D +T++ VLSAC H G+V EG+++F +M   +GI P   HY   +DLL +AG   EA ++
Sbjct: 363 DEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEI 422

Query: 578 IDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRW 637
           I ++P KP++ +W ALL  CRIH + ++  +A EQ+ +L P++   YVL  N+YA   +W
Sbjct: 423 IKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKW 482

Query: 638 DDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKL 697
           D    +R++M DRG+KK PGCS IE++  VH F+  D +HP+ + +Y  L ++  +++  
Sbjct: 483 DKLRELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIA 542

Query: 698 GYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAF 757
           GY P+T  V  D+  + KE A+  HSEKLA+AFGL+    G T+R++KNLR+C DCH+  
Sbjct: 543 GYSPNTSEVFLDIAEEDKENAVYRHSEKLAIAFGLINSGPGVTIRIVKNLRMCIDCHHVA 602

Query: 758 KFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           K +SKV  RE++VRD  RFHHFR G CSC DYW
Sbjct: 603 KLVSKVYDREVIVRDRTRFHHFRHGSCSCKDYW 635



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 138/536 (25%), Positives = 235/536 (43%), Gaps = 106/536 (19%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSL--KLVYARTLFDEIPQPDIVARTTLIAAYS 92
           + +H+  I +G      I N+++   C      + YAR LFD IP+P + +         
Sbjct: 31  KQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFS--------- 81

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                   +N M   YS  +     + L+ +M   +VKPD +T+
Sbjct: 82  ------------------------WNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTY 117

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC-------------V 199
             +       V  +    ++HC VVK G        NALI++Y  C              
Sbjct: 118 PFLFKGFTRSVALQLG-RELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSC 176

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
            S  V+  +++    R+     ++D +SWT ++TG+V    +DAAR++   M E   V+W
Sbjct: 177 KSDVVTWNAMISGYNRI-----KKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSW 231

Query: 260 NALISGYV----HRELKMLMLRIQL-----DEFTYTSVISACANSGLFRLGKQVHAYLLR 310
            A+I GY+    ++E  ML   +Q      DEFT  SV++ACA  G   LG+ +  Y+ +
Sbjct: 232 TAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDK 291

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
            + K    F   V NAL+ +Y+KCG V  A  IFN +P+RD  +W               
Sbjct: 292 NKVK-NDTF---VGNALIDMYFKCGNVEMALSIFNTLPQRDKFTW--------------- 332

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
                           T M+ GLA NG GEE L +FSQM      P +  + G +++C  
Sbjct: 333 ----------------TAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTH 376

Query: 431 LGALENGRQLHAQLV-HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWN 488
            G ++ G++  A +    G + +++    ++ +  + G ++ A+ +   MP   +S+ W 
Sbjct: 377 TGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWG 436

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDR----ITFLTVLSACNHAGLVKEGRR 540
           A++ A   H +   A    EQ+L+  + P+     +    + +ACN    ++E R+
Sbjct: 437 ALLGACRIHKDAEMAERAIEQILE--LEPNNGAVYVLQCNIYAACNKWDKLRELRQ 490



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 156/348 (44%), Gaps = 57/348 (16%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R +H H++  G        N LI++Y     +  AR +FD   + D+V    +I+ Y+
Sbjct: 132 LGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYN 191

Query: 93  -----------------ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
                             +  V  AR+ F+K P   RD V + AMI  Y   +    A+ 
Sbjct: 192 RIKKDVISWTAIVTGFVNTGQVDAARKYFHKMP--ERDHVSWTAMIDGYLRLNCYKEALM 249

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
           LFR+M+   +KPD FT  SVL+A A L   E  + ++ +  + K+     T V NALI +
Sbjct: 250 LFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTY--IDKNKVKNDTFVGNALIDM 307

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           Y KC +         +  A  +F+ +P+RD+ +WT M+ G   N       E L+  S+ 
Sbjct: 308 YFKCGN---------VEMALSIFNTLPQRDKFTWTAMVVGLAIN---GCGEEALNMFSQ- 354

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
                             ML   +  DE TY  V+SAC ++G+   GK+  A +    A+
Sbjct: 355 ------------------MLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASM---TAR 393

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
              E ++     +V L  K G + EA +I   MP + + + W A+L A
Sbjct: 394 HGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGA 441


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 265/773 (34%), Positives = 423/773 (54%), Gaps = 98/773 (12%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKL---VYARTLFDEIPQPDIVARTTL 87
           SS  R +HA MI +G     + +++L++    S       YA ++FD I +P+++     
Sbjct: 1   SSSVRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLL----- 55

Query: 88  IAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147
                                        +N M   ++ +S+  +A++L+  M    + P
Sbjct: 56  ----------------------------IWNTMFRGHALSSDPVSALKLYLVMISLGLLP 87

Query: 148 DNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSR 207
           D++TF  +L + A   +  K+  Q+H  V+K G  L   V  +LIS+Y +          
Sbjct: 88  DSYTFPFLLKSCAK-SKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQ---------N 137

Query: 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV 267
             +  AR+VFD    RD +S+T ++ GYV   Y+++A++  D +     V+WNA+ISGYV
Sbjct: 138 GRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYV 197

Query: 268 H-----------RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
                       +E+ M+M  ++ DE T  +V+SACA S    LG+ VH+++        
Sbjct: 198 ETGNYKEALELFKEM-MMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWI----NDHG 252

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
              +L + NAL+ LY K G+V                               + A  LF+
Sbjct: 253 FASNLKIVNALIDLYSKFGEV-------------------------------ETACELFD 281

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
            +  ++++SW  +I G       +E L LF +M   G  P D      + +CA LGA++ 
Sbjct: 282 GLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDI 341

Query: 437 GRQLHAQLVHS--GYDSSLSA-GNALITMYARCGVVEAANCVFNT-MPNVDSVSWNAMIA 492
           GR +H  +     G  +++S+   +LI MYA+CG ++AA  VF++ M N    +WNAMI+
Sbjct: 342 GRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMIS 401

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552
               HG    A +++ +M   GI PD ITF+ +LSAC+H+G++  GR  F +M   Y I 
Sbjct: 402 GFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEIT 461

Query: 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
           P  +HY   IDLL  +G F EA+++I+++P +P   IW +LL  C+IHGN++LG   A++
Sbjct: 462 PKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKK 521

Query: 613 LFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKE-PGCSWIEVDNKVHVFL 671
           L ++ P ++G+YVLLSN+YA  GRW++ A++R L+ D+G+KK+ PGCS IE+D+ VH F+
Sbjct: 522 LIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFI 581

Query: 672 VDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFG 731
           + D  HP+ + +Y  LE++ + + + G+VPDT  VL +ME + +E AL  HSEKLA+AFG
Sbjct: 582 IGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWREGALRHHSEKLAIAFG 641

Query: 732 LMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKC 784
           L+    G  + ++KNLR+C +CH A K +SK+  REI+ RD  RF HFRDG C
Sbjct: 642 LISTKPGTKLTIMKNLRVCKNCHEATKLISKIYKREIIARDRTRFXHFRDGVC 694


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 251/713 (35%), Positives = 387/713 (54%), Gaps = 73/713 (10%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D    T LI  YS     + AR++F+   ++ +D V +  M+  Y  N     +++LF  
Sbjct: 179 DAFVGTALIDCYSVCGYAECARQVFD--AIEYKDMVSWTGMVACYVENECFEESLKLFSR 236

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSG--TGLFTSVLNALISVYVK 197
           MR    KP+NFTF SVL A  + +E       +H    K+     LF  V   LI +Y+K
Sbjct: 237 MRIVGFKPNNFTFASVLKA-CVGLEVFNVGKAVHGCAFKTSYLEELFVGV--ELIDLYIK 293

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
                       +  A +VF+EMP+ D + W+ M+  Y +++  + A E    M   +  
Sbjct: 294 ---------SGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGL-- 342

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                               +  ++FT  S++ ACA+    +LG Q+H +++    K   
Sbjct: 343 --------------------VLPNQFTLASLLQACASLVDLQLGNQIHCHVV----KVGL 378

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
           + ++ V+NAL+ +Y KCG+                               ++ +  LF  
Sbjct: 379 DMNVFVSNALMDMYAKCGR-------------------------------MENSLQLFSE 407

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
                 +SW  +I G  Q G GE+ L LF  M     +  +  ++  + +CAG+ ALE G
Sbjct: 408 SPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPG 467

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
            Q+H+  V + YD +   GNALI MYA+CG ++ A  VF+ +   D VSWNAMI+    H
Sbjct: 468 SQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVH 527

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
           G    A++ +E ML+    PD++TF+ +LSAC++AGL+  G+ YF++M   Y I P  +H
Sbjct: 528 GLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEH 587

Query: 558 YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           Y   + LL R+G   +A  ++  +PF+PS  +W ALL+ C IH +++LG  +A+++ ++ 
Sbjct: 588 YTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIE 647

Query: 618 PHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAH 677
           P    T+VLLSN+YAN  RW + A +R  M+ +G++KEPG SWIE   +VH F V DT+H
Sbjct: 648 PEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSH 707

Query: 678 PEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPG 737
           P+ + +   LE L ++ R  GYVPD   VL D+E   KE  L  HSE+LA+A+GL++ P 
Sbjct: 708 PDTKLINGMLEWLNMKARNEGYVPDFSSVLLDVEDVDKEQRLWVHSERLALAYGLIRTPS 767

Query: 738 GATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            + +R++KNLRIC DCH A K +SK+V R+I++RD  RFHHF +G CSCGDYW
Sbjct: 768 ISPLRIIKNLRICADCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICSCGDYW 820



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 140/540 (25%), Positives = 240/540 (44%), Gaps = 79/540 (14%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+ A   L+  Y   D++  A ++F++ P   R+TV +  +I  YS       AI LF  
Sbjct: 78  DLFANNILLNFYVKYDSLPDAAKLFDEMP--DRNTVSFVTLIQGYSQCLRFSEAIGLFSR 135

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           ++ +  + + F F++VL  L +  E  K    +H  V K G      V  ALI  Y  C 
Sbjct: 136 LQGEGHELNPFVFSTVLK-LLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVC- 193

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                        AR+VFD +  +D +SWT M+  YV+N+  + + +             
Sbjct: 194 --------GYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFS---------- 235

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                       +M ++  + + FT+ SV+ AC    +F +GK VH    +T        
Sbjct: 236 ------------RMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLE---- 279

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
            L V   L+ LY K G V++A  +F +MP+ D++ W+ +++ Y                 
Sbjct: 280 ELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARY----------------- 322

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
                         AQ+   EE +++F +MR     P  +  A  + +CA L  L+ G Q
Sbjct: 323 --------------AQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQ 368

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           +H  +V  G D ++   NAL+ MYA+CG +E +  +F+  PN   VSWN +I    Q GN
Sbjct: 369 IHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGN 428

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY----FETMHGPYGIPPGE 555
           G +A+ L++ ML+  +    +T+ +VL AC     ++ G +      +T++    +    
Sbjct: 429 GEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNA 488

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
                 ID+  + G   +A+ V D L        W A+++G  +HG     ++  E + +
Sbjct: 489 -----LIDMYAKCGNIKDARLVFDMLREHDQVS-WNAMISGYSVHGLYGEALKTFESMLE 542



 Score =  150 bits (378), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 126/471 (26%), Positives = 206/471 (43%), Gaps = 104/471 (22%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           ++ ++VH     + +     +   LID+Y KS  +  A  +F+E+P+ D++  + +IA Y
Sbjct: 263 NVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARY 322

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
           + S+                                     AIE+F  MRR  V P+ FT
Sbjct: 323 AQSE---------------------------------QSEEAIEMFCRMRRGLVLPNQFT 349

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             S+L A A +V+ +    Q+HC VVK G  +   V NAL+ +Y KC           M 
Sbjct: 350 LASLLQACASLVDLQLG-NQIHCHVVKVGLDMNVFVSNALMDMYAKC---------GRME 399

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            + ++F E P   ++SW T++ GYV+                  G    ALI   + ++ 
Sbjct: 400 NSLQLFSESPNCTDVSWNTVIVGYVQ-----------------AGNGEKALI---LFKD- 438

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
            ML  ++Q  E TY+SV+ ACA       G Q+H+  ++T      + +  V NAL+ +Y
Sbjct: 439 -MLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKT----IYDKNTVVGNALIDMY 493

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            KCG + +AR +F+ + E D VSWNA++S Y   GL  EA   FE+M E           
Sbjct: 494 AKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETEC-------- 545

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
                                  KP    F G +++C+  G L+ G+     +V   YD 
Sbjct: 546 -----------------------KPDKVTFVGILSACSNAGLLDRGQAYFKSMVEE-YDI 581

Query: 452 SLSAGN--ALITMYARCGVVEAANCVFNTMPNVDSV-SWNAMIAALGQHGN 499
              A +   ++ +  R G ++ A  + + +P   SV  W A+++A   H +
Sbjct: 582 EPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHND 632



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 166/358 (46%), Gaps = 66/358 (18%)

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +HC ++K G  L     N L++ YVK  S P          A ++FDEMP+R+ +S+ T+
Sbjct: 66  LHCEIIKKGNCLDLFANNILLNFYVKYDSLP---------DAAKLFDEMPDRNTVSFVTL 116

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           + GY +       R      SE +G+   + + G  H          +L+ F +++V+  
Sbjct: 117 IQGYSQ-----CLR-----FSEAIGLF--SRLQGEGH----------ELNPFVFSTVLKL 154

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
             ++   +LG  VHA + +     +  F   V  AL+  Y  CG    AR +F+ +  +D
Sbjct: 155 LVSAEWAKLGFSVHACVYKL-GFDSDAF---VGTALIDCYSVCGYAECARQVFDAIEYKD 210

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
           +VSW  +++ YV                               +N   EE LKLFS+MR+
Sbjct: 211 MVSWTGMVACYV-------------------------------ENECFEESLKLFSRMRI 239

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
            GFKP ++ FA  + +C GL     G+ +H     + Y   L  G  LI +Y + G V+ 
Sbjct: 240 VGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDD 299

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           A  VF  MP  D + W+ MIA   Q      AIE++ +M +  +LP++ T  ++L AC
Sbjct: 300 ALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQAC 357



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 141/297 (47%), Gaps = 12/297 (4%)

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER----DLVSWNAILSA 361
           ++L +  +  +PEF+  +  +L+    + G     + +  ++ ++    DL + N +L+ 
Sbjct: 29  SFLAQRTSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNF 88

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
           YV    + +A  LF+ M +RN +S+  +I G +Q     E + LFS+++ EG +   + F
Sbjct: 89  YVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVF 148

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
           +  +         + G  +HA +   G+DS    G ALI  Y+ CG  E A  VF+ +  
Sbjct: 149 STVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEY 208

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY 541
            D VSW  M+A   ++     +++L+ +M   G  P+  TF +VL AC    +   G+  
Sbjct: 209 KDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGK-- 266

Query: 542 FETMHG-PYGIPPGEDHY--ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
              +HG  +     E+ +     IDL  ++G   +A  V + +P     P W  ++A
Sbjct: 267 --AVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIP-WSFMIA 320



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 151/358 (42%), Gaps = 77/358 (21%)

Query: 11  TLANRY--ASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVY 68
            L N++  AS LQ C   + +   L   +H H++  G      + N L+D+Y K  ++  
Sbjct: 343 VLPNQFTLASLLQAC--ASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMEN 400

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           +  LF E P    V+                                 +N +I  Y    
Sbjct: 401 SLQLFSESPNCTDVS---------------------------------WNTVIVGYVQAG 427

Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL 188
           NG  A+ LF+DM    V+    T++SVL A A I   E    Q+H   VK+     T V 
Sbjct: 428 NGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPG-SQIHSLSVKTIYDKNTVVG 486

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY-VKNDYLDAAREF 247
           NALI +Y KC +         +  AR VFD + E D++SW  M++GY V   Y +A + F
Sbjct: 487 NALIDMYAKCGN---------IKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTF 537

Query: 248 LDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY 307
                                    ML    + D+ T+  ++SAC+N+GL   G+     
Sbjct: 538 -----------------------ESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKS 574

Query: 308 LLRT-EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYV 363
           ++   + +P  E        +V L  + G +++A  + +++P E  ++ W A+LSA V
Sbjct: 575 MVEEYDIEPCAEHY----TCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACV 628


>gi|302802241|ref|XP_002982876.1| hypothetical protein SELMODRAFT_117311 [Selaginella moellendorffii]
 gi|300149466|gb|EFJ16121.1| hypothetical protein SELMODRAFT_117311 [Selaginella moellendorffii]
          Length = 923

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 255/739 (34%), Positives = 397/739 (53%), Gaps = 79/739 (10%)

Query: 60  YCKSLKL-VYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYN 118
           + ++L++  +AR L  +    D V +T L+  Y     V  A E+F +  ++ RD V +N
Sbjct: 256 FSEALRIHAFARELAGD---ADTVVQTALVNMYGKFGKVDDAEEIFER--IQERDVVSWN 310

Query: 119 AMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVK 178
           AM+TA + N     A + FR+M      P   T+ ++L+A   +    K    +    V+
Sbjct: 311 AMLTANACNGFHDKAFKCFREMLLVGELPSRITYVAILNA-CFLAAHLKHGDFVKTLAVE 369

Query: 179 SGTGLFTSVL---NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS---WTTMM 232
            G G+ +  +    A++++Y +C S     S SL+           +RD+ S   W T++
Sbjct: 370 GGCGIESVDVVMGTAIMNMYSRCKSPKSAFSSSLL--------LEQDRDQPSIMMWNTVL 421

Query: 233 TGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISAC 292
           + YV+N+  + A                            ML+  + +D  +  +V +AC
Sbjct: 422 SLYVENEQFEEAFTIFR----------------------LMLLGGVTIDTVSLMTVFNAC 459

Query: 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL 352
            +S     GK +H+ L  TE++ T +   PV NALVT+Y + G + +AR+IF+ M  R++
Sbjct: 460 GSSASLEKGKWIHSLL--TESELTRK--TPVQNALVTMYARLGSLEDAREIFDAMTTRNV 515

Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
           +SW A++  +                               +Q G   E L++F  + LE
Sbjct: 516 ISWTAMVGVH-------------------------------SQLGLNREALRIFRSILLE 544

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
           G  P +  F   + +C  L ++   + + A L  +G+  ++   N L+    +CG +E  
Sbjct: 545 GVAPNEVTFTAVLNACGNLASIPAAKLVQACLSETGFFGNVEVANGLLCTLGKCGSLEEV 604

Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
              F  M   + VSWN  IAA  QHGNG R +EL++ M  EGI    +T + VLS+C+HA
Sbjct: 605 ANFFQVMAVKNQVSWNTAIAANAQHGNGVRGVELFQTMQLEGIDTGSVTLIGVLSSCSHA 664

Query: 533 GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI-WE 591
           GLV +G  YF  MH  YG P   +HY+  IDLL RAG    A++ +  LPF   +   W 
Sbjct: 665 GLVAQGYSYFLNMHVDYGFPAEAEHYSCVIDLLSRAGWLEHAEEFVKRLPFGDQSVFPWI 724

Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
            LL GC++HG+++ G +A +++  L P   G Y+++ N+YA  G+W +AA VRK M + G
Sbjct: 725 TLLCGCKLHGDLERGGRATQRILGLNPGSTGPYLVMHNLYAGAGKWPEAAAVRKSMVELG 784

Query: 652 VKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDME 711
            KKEPG SWIEV  ++H F V DT+HP +  +++ LE+L  EM++ G+V D K V++D++
Sbjct: 785 PKKEPGLSWIEVKGRIHEFRVGDTSHPRSSEIHRELERLNEEMKRAGFVCDIKAVVYDLQ 844

Query: 712 SDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVR 771
           + +KE  L  HSEKLA+AFGL+    G  +R++KNLR+C DCH+A KF+S +VGREIVVR
Sbjct: 845 AKEKESLLCQHSEKLAIAFGLISTAAGEPLRIMKNLRVCSDCHSATKFISGLVGREIVVR 904

Query: 772 DGKRFHHFRDGKCSCGDYW 790
           D  RFHHFR G CSC D+W
Sbjct: 905 DAYRFHHFRGGACSCEDFW 923



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 127/539 (23%), Positives = 224/539 (41%), Gaps = 70/539 (12%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D++  T ++ AY    ++  A  +F+   + +RD   +NAMI+    +  G  A+ELFR 
Sbjct: 173 DVIVATAVMNAYGKCGDLDSAWGVFDG--ILVRDAAVWNAMISLLVAHEQGDEALELFRQ 230

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           MR   V P+  T  + L+A      +  + +++H    +      T V  AL+++Y K  
Sbjct: 231 MRLGGVTPNKGTCVAALNACCH-SRDFSEALRIHAFARELAGDADTVVQTALVNMYGK-- 287

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                     +  A  +F+ + ERD +SW  M+T    N + D A +             
Sbjct: 288 -------FGKVDDAEEIFERIQERDVVSWNAMLTANACNGFHDKAFKCF----------- 329

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE- 318
                    RE  ML++       TY ++++AC  +   + G  V    L  E     E 
Sbjct: 330 ---------RE--MLLVGELPSRITYVAILNACFLAAHLKHGDFVKT--LAVEGGCGIES 376

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
             + +  A++ +Y +C           + P+          SA+ S+ L+++ +      
Sbjct: 377 VDVVMGTAIMNMYSRC-----------KSPK----------SAFSSSLLLEQDRD----- 410

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
            + +++ W  ++S   +N   EE   +F  M L G      +      +C    +LE G+
Sbjct: 411 -QPSIMMWNTVLSLYVENEQFEEAFTIFRLMLLGGVTIDTVSLMTVFNACGSSASLEKGK 469

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
            +H+ L  S         NAL+TMYAR G +E A  +F+ M   + +SW AM+    Q G
Sbjct: 470 WIHSLLTESELTRKTPVQNALVTMYARLGSLEDAREIFDAMTTRNVISWTAMVGVHSQLG 529

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
               A+ ++  +L EG+ P+ +TF  VL+AC +   +    +  +      G     +  
Sbjct: 530 LNREALRIFRSILLEGVAPNEVTFTAVLNACGNLASIPAA-KLVQACLSETGFFGNVEVA 588

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
              +  L + G   E  +    +  K     W   +A    HGN   G++  E LFQ M
Sbjct: 589 NGLLCTLGKCGSLEEVANFFQVMAVKNQVS-WNTAIAANAQHGN---GVRGVE-LFQTM 642



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 172/396 (43%), Gaps = 69/396 (17%)

Query: 143 DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSP 202
           DD   D  TF +++   A +  +  Q  ++H  ++++G  +   +   L+++Y KC S  
Sbjct: 34  DDGSADASTFAALIHKCARL-HDLAQGRRIHGLILRNGIEVGDFLGARLLAMYCKCGSPE 92

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL 262
                     AR VF  + ++  ++WT+++                 G++   G    A 
Sbjct: 93  ---------EARAVFQGIQDKSVVAWTSLI-----------------GVNARSGHPKEAF 126

Query: 263 ISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
              ++ RE+++    +  ++ TY +V+ AC +        +V     R EA         
Sbjct: 127 ---HLFREMQLQ--GVMPNDVTYVAVLGACGHP------WEVDTIRARVEA--------- 166

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
                      CG +           E D++   A+++AY   G +D A  +F+ +  R+
Sbjct: 167 -----------CGSL-----------ELDVIVATAVMNAYGKCGDLDSAWGVFDGILVRD 204

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
              W  MIS L  +  G+E L+LF QMRL G  P       A+ +C          ++HA
Sbjct: 205 AAVWNAMISLLVAHEQGDEALELFRQMRLGGVTPNKGTCVAALNACCHSRDFSEALRIHA 264

Query: 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
                  D+      AL+ MY + G V+ A  +F  +   D VSWNAM+ A   +G   +
Sbjct: 265 FARELAGDADTVVQTALVNMYGKFGKVDDAEEIFERIQERDVVSWNAMLTANACNGFHDK 324

Query: 503 AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG 538
           A + + +ML  G LP RIT++ +L+AC  A  +K G
Sbjct: 325 AFKCFREMLLVGELPSRITYVAILNACFLAAHLKHG 360



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 136/661 (20%), Positives = 264/661 (39%), Gaps = 142/661 (21%)

Query: 13  ANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTL 72
           A+ +A+ +  C   + +     R +H  ++ +G +  + +  RL+ +YCK      AR +
Sbjct: 40  ASTFAALIHKCARLHDLAQ--GRRIHGLILRNGIEVGDFLGARLLAMYCKCGSPEEARAV 97

Query: 73  FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
           F  I    +VA T+LI   + S + K A  +F                            
Sbjct: 98  FQGIQDKSVVAWTSLIGVNARSGHPKEAFHLF---------------------------- 129

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALA------LIVEEEKQCMQMHCTVVKSGTGLFTS 186
                R+M+   V P++ T+ +VL A         I    + C  +   V+ +     T+
Sbjct: 130 -----REMQLQGVMPNDVTYVAVLGACGHPWEVDTIRARVEACGSLELDVIVA-----TA 179

Query: 187 VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAARE 246
           V+NA    Y KC           + +A  VFD +  RD   W  M++  V ++  D A E
Sbjct: 180 VMNA----YGKCGD---------LDSAWGVFDGILVRDAAVWNAMISLLVAHEQGDEALE 226

Query: 247 FLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
                                    +M +  +  ++ T  + ++AC +S  F    ++HA
Sbjct: 227 LFR----------------------QMRLGGVTPNKGTCVAALNACCHSRDFSEALRIHA 264

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366
           +      +   +    V  ALV +Y K GKV++A +IF ++ ERD+VSWNA+L+A     
Sbjct: 265 F----ARELAGDADTVVQTALVNMYGKFGKVDDAEEIFERIQERDVVSWNAMLTAN---- 316

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
                                      A NG+ ++  K F +M L G  P    +   + 
Sbjct: 317 ---------------------------ACNGFHDKAFKCFREMLLVGELPSRITYVAILN 349

Query: 427 SCAGLGALENGRQLHAQLVHSG---YDSSLSAGNALITMYARCGVVEAANCVFNT----- 478
           +C     L++G  +    V  G       +  G A++ MY+RC   ++A   F++     
Sbjct: 350 ACFLAAHLKHGDFVKTLAVEGGCGIESVDVVMGTAIMNMYSRCKSPKSA---FSSSLLLE 406

Query: 479 ----MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
                P++  + WN +++   ++     A  ++  ML  G+  D ++ +TV +AC  +  
Sbjct: 407 QDRDQPSI--MMWNTVLSLYVENEQFEEAFTIFRLMLLGGVTIDTVSLMTVFNACGSSAS 464

Query: 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
           +++G ++  ++     +          + +  R G   +A+++ D++  + +   W A++
Sbjct: 465 LEKG-KWIHSLLTESELTRKTPVQNALVTMYARLGSLEDAREIFDAMTTR-NVISWTAMV 522

Query: 595 AGCRIHGNIDLGIQAA----EQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650
               +H  + L  +A       L + +  +  T+  + N   NL     A  V+  + + 
Sbjct: 523 G---VHSQLGLNREALRIFRSILLEGVAPNEVTFTAVLNACGNLASIPAAKLVQACLSET 579

Query: 651 G 651
           G
Sbjct: 580 G 580



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 158/352 (44%), Gaps = 44/352 (12%)

Query: 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
           D  T+ ++I  CA       G+++H  +LR       E    +   L+ +Y KCG     
Sbjct: 39  DASTFAALIHKCARLHDLAQGRRIHGLILRNGI----EVGDFLGARLLAMYCKCGS---- 90

Query: 341 RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGE 400
                  PE                    EA+++F+ ++++++++WT +I   A++G+ +
Sbjct: 91  -------PE--------------------EARAVFQGIQDKSVVAWTSLIGVNARSGHPK 123

Query: 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG-YDSSLSAGNAL 459
           E   LF +M+L+G  P D  +   + +C     ++  R   A++   G  +  +    A+
Sbjct: 124 EAFHLFREMQLQGVMPNDVTYVAVLGACGHPWEVDTIR---ARVEACGSLELDVIVATAV 180

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           +  Y +CG +++A  VF+ +   D+  WNAMI+ L  H  G  A+EL+ QM   G+ P++
Sbjct: 181 MNAYGKCGDLDSAWGVFDGILVRDAAVWNAMISLLVAHEQGDEALELFRQMRLGGVTPNK 240

Query: 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579
            T +  L+AC H+    E  R         G        A  +++  + GK  +A+++ +
Sbjct: 241 GTCVAALNACCHSRDFSEALRIHAFARELAGDADTVVQTA-LVNMYGKFGKVDDAEEIFE 299

Query: 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL--MPHHAGTYVLLSN 629
            +  +     W A+L     +G  D   +   ++  +  +P    TYV + N
Sbjct: 300 RIQERDVVS-WNAMLTANACNGFHDKAFKCFREMLLVGELPSRI-TYVAILN 349


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 251/644 (38%), Positives = 351/644 (54%), Gaps = 66/644 (10%)

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           P + T    L + + +    +   Q+H   +K  +     VL +L+S+Y KC        
Sbjct: 68  PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKC-------- 119

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
             L+  A+RVFDEMP    + WT ++T Y     +DA       + E V VA NA  +G 
Sbjct: 120 -GLLHRAQRVFDEMPHPSTVPWTALITAY-----MDAG-----DLREAVHVARNAFANG- 167

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                      ++ D FT   V++ACA       G+ V     R   +     S+ V  A
Sbjct: 168 -----------MRPDSFTAVRVLTACARIADLATGETV----WRAAEQEGVAQSVFVATA 212

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
            V LY KCG++ +AR++F++M  +D V+W A++  Y S                      
Sbjct: 213 AVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYAS---------------------- 250

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
                    NG+  E L LF  M+ EG KP  YA AGA+++C  LGAL+ GRQ    +  
Sbjct: 251 ---------NGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDW 301

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
             +  +   G ALI MYA+CG    A  VF  M   D + WNAMI  LG  G+   A  L
Sbjct: 302 DEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFAL 361

Query: 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
             QM K G+  +  TF+ +L +C H GL+++GRRYF  M   Y I P  +HY   +DLL 
Sbjct: 362 VGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLS 421

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626
           RAG   EA  ++D +P   +A I  ALL GC+IH N +L     +QL  L P ++G YV+
Sbjct: 422 RAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVM 481

Query: 627 LSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKY 686
           LSN+Y+N GRW+DAA++R  M+ +GV+K P CSW+E + KVH F V D +HP +  +YK 
Sbjct: 482 LSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKK 541

Query: 687 LEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKN 746
           L++L LEM+ +GY P T+ V+ D+E ++KE+ L  HSEKLA+AF L+    G T+RV KN
Sbjct: 542 LDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKN 601

Query: 747 LRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           LR+C DCH A K +S++  REI+VRD  RFH FRDG CSC DYW
Sbjct: 602 LRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 121/497 (24%), Positives = 192/497 (38%), Gaps = 114/497 (22%)

Query: 26  RNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVART 85
           R P        +HA  +        H++  L+ +Y K   L  A+ +FDE+P P      
Sbjct: 82  RLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPS----- 136

Query: 86  TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
                                       TV + A+ITAY    +   A+ + R+   + +
Sbjct: 137 ----------------------------TVPWTALITAYMDAGDLREAVHVARNAFANGM 168

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKS----GTGLFTSVLNALISVYVKCVSS 201
           +PD+FT   VL+A A I +     +    TV ++    G      V  A + +YVKC   
Sbjct: 169 RPDSFTAVRVLTACARIAD-----LATGETVWRAAEQEGVAQSVFVATAAVDLYVKC--- 220

Query: 202 PFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNA 261
                   M  AR VFD+M  +D ++W  M+ GY  N +    RE LD            
Sbjct: 221 ------GEMAKAREVFDKMRHKDAVAWGAMVGGYASNGH---PREALDLF---------- 261

Query: 262 LISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
                    L M    ++ D +     +SAC   G   LG+Q    +   E    P    
Sbjct: 262 ---------LAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVL-- 310

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
               AL+ +Y KCG   EA  +F QM ++D++ WNA                        
Sbjct: 311 --GTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNA------------------------ 344

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
                  MI GL   G+ +    L  QM   G K  D  F G + SC   G +++GR+  
Sbjct: 345 -------MILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYF 397

Query: 442 AQLVHSGYDSS-LSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
             +    + S  +     ++ + +R G+++ A+ + + MP   ++V   A++     H  
Sbjct: 398 HNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIH-- 455

Query: 500 GARAIELYEQMLKEGIL 516
             R  EL E +LK+ IL
Sbjct: 456 --RNTELAEHVLKQLIL 470



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 171/389 (43%), Gaps = 61/389 (15%)

Query: 43  SSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKL--- 99
           ++G +P      R++    +   L    T++    Q + VA++  +A  +    VK    
Sbjct: 165 ANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQ-EGVAQSVFVATAAVDLYVKCGEM 223

Query: 100 --AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLS 157
             ARE+F+K  ++ +D V + AM+  Y+ N +   A++LF  M+ + +KPD +     LS
Sbjct: 224 AKAREVFDK--MRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALS 281

Query: 158 ALALI--VEEEKQCMQMHCTVVKSGTGLFTSVL-NALISVYVKCVSSPFVSSRSLMGAAR 214
           A   +  ++  +Q ++M    V     L   VL  ALI +Y KC S+           A 
Sbjct: 282 ACTRLGALDLGRQAIRM----VDWDEFLDNPVLGTALIDMYAKCGSTV---------EAW 328

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
            VF +M ++D + W  M+ G               GM+ +  +A+ AL+        +M 
Sbjct: 329 VVFQQMRKKDIIVWNAMILGL--------------GMTGHEKIAF-ALVG-------QME 366

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQ-VHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
              ++L++ T+  ++ +C ++GL + G++  H         P  E        +V L  +
Sbjct: 367 KSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHY----GCMVDLLSR 422

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL--SWT---- 387
            G + EA  + + MP   + +   IL A +    I     L E + ++ +L   W     
Sbjct: 423 AGLLQEAHQLVDDMP---MPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNY 479

Query: 388 VMISGLAQN-GYGEEGLKLFSQMRLEGFK 415
           VM+S +  N G  E+  KL   M+ +G +
Sbjct: 480 VMLSNIYSNRGRWEDAAKLRLDMKAKGVE 508


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 268/775 (34%), Positives = 403/775 (52%), Gaps = 126/775 (16%)

Query: 26  RNPITSSLARSVHAHMISSGFKPREHIINRLIDIYC--KSLKLVYARTLFDEIPQPDIVA 83
           +N  T   A  +HA  I +       + +RL+ +Y   +   L YA +LFD I +P +V+
Sbjct: 23  QNCGTEREANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLVS 82

Query: 84  RTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD 143
                                            +N +I  Y  N   + AI LF  +  D
Sbjct: 83  ---------------------------------WNLLIKCYIENQRSNDAIALFCKLLCD 109

Query: 144 DVKPDNFTFTSVLSALALI--VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSS 201
            V PD+FT   VL   A +  ++E KQ   +H  V+K G G+   VL++L+S+       
Sbjct: 110 FV-PDSFTLPCVLKGCARLGALQEGKQ---IHGLVLKIGFGVDKFVLSSLVSM------- 158

Query: 202 PFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNA 261
                                            Y K   ++  R+  D M +   V+WN+
Sbjct: 159 ---------------------------------YSKCGEIELCRKVFDRMEDKDVVSWNS 185

Query: 262 LISGY-----VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
           LI GY     +   L+M     + D F++T +I   + SG                    
Sbjct: 186 LIDGYARCGEIELALEMFEEMPEKDSFSWTILIDGLSKSG-------------------- 225

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
                              K+  ARD+F++MP R+ VSWNA+++ Y+ AG  + AK LF+
Sbjct: 226 -------------------KLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFD 266

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
            M ER+L++W  MI+G  +N    + LKLF  M  E   P      GA+++ +G+ +L  
Sbjct: 267 QMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGT 326

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           GR +H+ +V SG+ +    G  LI MY++CG V++A  VF ++P      W ++I  LG 
Sbjct: 327 GRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGM 386

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
           HG   + +EL+++M + G+ P  ITF+ VL+AC+HAG  ++  RYF+ M   YGI P  +
Sbjct: 387 HGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIE 446

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           HY   ID+LCRAG   EAKD I+ +P K +  IW +LL+G R HGNI +G  AA+ L  L
Sbjct: 447 HYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDL 506

Query: 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTA 676
            P   G YV+LSNMYA  G W+   +VR++M+ +G+KK+PGCS IE    +H F+V D +
Sbjct: 507 APDTTGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKS 566

Query: 677 HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESD-QKEYALSTHSEKLAVAFGLMKL 735
           HP+ + +Y  L ++  ++   G++PDT  VL  +E D +KE  L THSE+LA+AFGL+ +
Sbjct: 567 HPQTEEIYIKLCEMKKKLNVAGHIPDTTQVLLCLEEDNEKEAELETHSERLAIAFGLLNI 626

Query: 736 PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             G+ +R++KNLRIC DCH   K +S +  REI++RDG RFHHF+ G CSC D+W
Sbjct: 627 KHGSPIRIIKNLRICNDCHAVTKLLSHIYNREIIIRDGSRFHHFKSGSCSCKDFW 681


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 248/712 (34%), Positives = 388/712 (54%), Gaps = 70/712 (9%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+    +L+  YS    +  A+ +F+K   K  + V +N MI           A  LFR+
Sbjct: 168 DVRVNNSLVDMYSKCGYLTEAQMLFDKNNRK--NAVSWNTMIGGLCTKGYIFEAFNLFRE 225

Query: 140 MR-RDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
           M+ ++D++ +  T  ++L A  L + + +   ++H   ++ G      V N  ++ Y KC
Sbjct: 226 MQMQEDIEVNEVTVLNILPA-CLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKC 284

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
                     ++  A RVF  M  +   SW  ++ G  +N     A      ++  + + 
Sbjct: 285 ---------GMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKA------LNLYIQMT 329

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
           ++ L+                 D FT  S++ A A+    R GK+VH ++LR       E
Sbjct: 330 YSGLVP----------------DWFTIGSLLLASAHLKSLRYGKEVHGFVLR----HGLE 369

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
               +  +L++LY  CG+ + A                               + LF+ M
Sbjct: 370 IDSFIGISLLSLYIHCGESSSA-------------------------------RLLFDGM 398

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
            E++ +SW  MISG +QNG  E+ L LF ++  +GF+P D A    + +C+   AL  G+
Sbjct: 399 EEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGK 458

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           + H   + +     +    + I MYA+ G ++ +  VF+ + N D  SWNA+IAA G HG
Sbjct: 459 ETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHG 518

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
           +G  +IEL+E+M K G +PD  TF+ +L+ C+HAGLV+EG +YF  M   +GI P  +HY
Sbjct: 519 DGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHY 578

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
           A  +D+L RAG+  +A  ++  +P +P + +W +LL+ CR  G +++G   AE+L +L P
Sbjct: 579 ACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEP 638

Query: 619 HHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHP 678
            +   YV LSN+YA  GRWDD  RVR++++D G++K+ GCSWIE+  KVH F+  D   P
Sbjct: 639 KNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGKVHSFVAGDNLLP 698

Query: 679 EAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGG 738
           +++ +     +L  +M K+GY P+T  VLHD++ ++K   L  HSEKLA+ FGL+    G
Sbjct: 699 QSKEMSMTWRKLEKKMCKIGYKPNTSAVLHDVDEEKKIEKLRGHSEKLAICFGLLNTTKG 758

Query: 739 ATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            T+R+ KNLRIC DCHNA KFMS+V GREI++RD KRFHHF+DG CSCGDYW
Sbjct: 759 TTLRIFKNLRICVDCHNASKFMSEVTGREIIIRDNKRFHHFKDGLCSCGDYW 810



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 120/468 (25%), Positives = 211/468 (45%), Gaps = 73/468 (15%)

Query: 133 AIELFRDMRRD-DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
           AI++F  +  D +   DNFTF  V+ A    ++     + +H  V+K G  L   V NAL
Sbjct: 14  AIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEV-IHGMVIKMGLLLDVFVGNAL 72

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           I++Y K            + AA +VF  MP R+ +SW ++++G+ +N +   +++  D +
Sbjct: 73  IAMYGK---------FGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGF---SKDCFDML 120

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
            E        +++G    E  +L      D  T  +V+  CA     ++G ++H   ++ 
Sbjct: 121 VE--------MMAG----EEGLLP-----DIATLVTVLPVCAREVDVQMGIRIHGLAVKL 163

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
                    + VNN+LV +Y KCG + EA+ +F++   ++ VSWN ++    + G I EA
Sbjct: 164 GLSE----DVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEA 219

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
            +LF  M                             QM+ E  +  +      + +C  +
Sbjct: 220 FNLFREM-----------------------------QMQ-EDIEVNEVTVLNILPACLEI 249

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
             L + ++LH   +  G+       N  +  YA+CG++  A  VF +M      SWNA+I
Sbjct: 250 SQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALI 309

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG---P 548
               Q+G+  +A+ LY QM   G++PD  T  ++L A  H     +  RY + +HG    
Sbjct: 310 GGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHL----KSLRYGKEVHGFVLR 365

Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           +G+          + L    G+ S A+ + D +  K S   W A+++G
Sbjct: 366 HGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVS-WNAMISG 412



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 154/356 (43%), Gaps = 47/356 (13%)

Query: 254 NVGVAWNALISGYVHRELKMLM-LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
           +V V  N L S  +   +K++       D FT+  VI AC  S    LG+ +H  ++   
Sbjct: 2   HVAVHRNELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVI--- 58

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
            K      + V NAL+ +Y K G V+ A  +F+ MP R+LVSWN+I              
Sbjct: 59  -KMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSI-------------- 103

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL--EGFKPCDYAFAGAITSCAG 430
                            ISG ++NG+ ++   +  +M    EG  P        +  CA 
Sbjct: 104 -----------------ISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAR 146

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
              ++ G ++H   V  G    +   N+L+ MY++CG +  A  +F+     ++VSWN M
Sbjct: 147 EVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTM 206

Query: 491 IAALGQHGNGARAIELYEQM-LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG-- 547
           I  L   G    A  L+ +M ++E I  + +T L +L AC    L     R  + +HG  
Sbjct: 207 IGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPAC----LEISQLRSLKELHGYS 262

Query: 548 -PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
             +G    E     F+    + G    A+ V  S+  K +   W AL+ GC  +G+
Sbjct: 263 IRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETK-TVNSWNALIGGCAQNGD 317



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 92/195 (47%), Gaps = 10/195 (5%)

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473
           F   ++ F   I +C G      G  +H  ++  G    +  GNALI MY + G V+AA 
Sbjct: 27  FNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAV 86

Query: 474 CVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML--KEGILPDRITFLTVLSACNH 531
            VF+ MP  + VSWN++I+   ++G      ++  +M+  +EG+LPD  T +TVL  C  
Sbjct: 87  KVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAR 146

Query: 532 AGLVKEGRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
              V+ G R    +HG     G+          +D+  + G  +EA+ + D    + +A 
Sbjct: 147 EVDVQMGIR----IHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDK-NNRKNAV 201

Query: 589 IWEALLAGCRIHGNI 603
            W  ++ G    G I
Sbjct: 202 SWNTMIGGLCTKGYI 216


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 246/667 (36%), Positives = 372/667 (55%), Gaps = 69/667 (10%)

Query: 124 YSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGL 183
           +S   +  +A+ +FR +     +PD+ TFT  LSA A +  + +    +      +G   
Sbjct: 84  HSRRGSPASALRVFRALP-PAARPDSTTFTLALSACARL-GDLRGGESVRDRAFDAGYKD 141

Query: 184 FTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDA 243
              V ++L+ +Y +            MG A +VF  MP RD ++W+TM+ G+V      +
Sbjct: 142 DVFVCSSLLHLYARW---------GAMGDAVKVFVRMPRRDRVTWSTMVAGFV------S 186

Query: 244 AREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ 303
           A + LD +               ++R  +M    ++ DE     VI AC  +   R+G  
Sbjct: 187 AGQPLDAIQ--------------MYR--RMREDGVKGDEVVMIGVIQACTAARNVRMGAS 230

Query: 304 VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV 363
           VH +LLR   +                                    D+V+  +++  Y 
Sbjct: 231 VHGHLLRHGMR-----------------------------------MDVVTATSLVDMYA 255

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
             GL+D A  +F  M  RN +SW+ MISG AQNG  +E L+LF  M+  G +P   A   
Sbjct: 256 KNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVS 315

Query: 424 AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
           A+ +C+ +G L+ GR +H  +V   +D +   G A I MY++CG + +A  +FN + + D
Sbjct: 316 ALLACSNIGFLKLGRSVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRD 374

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFE 543
            + WNAMIA  G HG G  A+ L+++M + G+ PD  TF ++LSA +H+GLV+EG+ +F 
Sbjct: 375 LILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFG 434

Query: 544 TMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNI 603
            M   + I P E HY   +DLL R+G   EA D++ S+  +P+  IW ALL+GC  +  +
Sbjct: 435 RMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKL 494

Query: 604 DLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEV 663
           +LG   A+ + +L P   G   L+SN+YA   +WD   +VRKLM+D G KK PGCS IE+
Sbjct: 495 ELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEI 554

Query: 664 DNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHS 723
               HVF+++D +HP+ + +   + +L LEMRK+GY+P T+FV HD+E + KE  LS HS
Sbjct: 555 RGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHS 614

Query: 724 EKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGK 783
           E+LA+AFGL+    G  + ++KNLR+CGDCH+A K++SK+  REIVVRD KRFHHF+DG 
Sbjct: 615 ERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGV 674

Query: 784 CSCGDYW 790
           CSC DYW
Sbjct: 675 CSCRDYW 681



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 133/303 (43%), Gaps = 41/303 (13%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+V  T+L+  Y+ +  + +A  +F    +  R+ V ++AMI+ ++ N     A+ LFR+
Sbjct: 243 DVVTATSLVDMYAKNGLLDVACRVFGL--MVHRNDVSWSAMISGFAQNGQSDEALRLFRN 300

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL-NALISVYVKC 198
           M+   ++PD+    S L A + I    K    +H  +V+     F  +L  A I +Y KC
Sbjct: 301 MQASGIQPDSGALVSALLACSNI-GFLKLGRSVHGFIVRRFD--FNCILGTAAIDMYSKC 357

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
            S         + +A+ +F+ + +RD + W  M+     +     A      M+E     
Sbjct: 358 GS---------LASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNET---- 404

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                              ++ D  T+ S++SA ++SGL   GK     ++    K TP 
Sbjct: 405 ------------------GMRPDHATFASLLSALSHSGLVEEGKLWFGRMV-NHFKITPA 445

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSAYVSAGLIDEAKSLFEA 377
               V   LV L  + G V EA D+   M     V+ W A+LS  ++   ++  +S+ + 
Sbjct: 446 EKHYV--CLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADN 503

Query: 378 MRE 380
           + E
Sbjct: 504 ILE 506



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 26/183 (14%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           T  I  YS   ++  A+ +FN   +  RD + +NAMI     +  G  A+ LF++M    
Sbjct: 348 TAAIDMYSKCGSLASAQMLFNM--ISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETG 405

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV-----YVKCV 199
           ++PD+ TF S+LSAL+            H  +V+ G   F  ++N          YV  V
Sbjct: 406 MRPDHATFASLLSALS------------HSGLVEEGKLWFGRMVNHFKITPAEKHYVCLV 453

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELS-WTTMMTGYVKNDYLDAAREFLDGMSE----N 254
               ++   L+  A  +   M     ++ W  +++G + N  L+      D + E    +
Sbjct: 454 D--LLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDD 511

Query: 255 VGV 257
           VGV
Sbjct: 512 VGV 514


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/571 (39%), Positives = 344/571 (60%), Gaps = 58/571 (10%)

Query: 220 MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQ 279
           M  RD  SWT+++ GY +ND  D A                          L ML  R +
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALG----------------------LLLGMLRGRFK 38

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            + FT+ S++ A   S    +G+Q+HA  ++ +        + V +AL+ +Y +CG+   
Sbjct: 39  PNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHD----DVYVGSALLDMYARCGR--- 91

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
                                       +D A ++F+ +  +N +SW  +I+G A+ G G
Sbjct: 92  ----------------------------MDMAIAVFDQLESKNGVSWNALIAGFARKGDG 123

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
           E  L +F++M+  GF+   + ++   ++ AG+GALE G+ +HA ++ SG   S   GN +
Sbjct: 124 ETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTI 183

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           + MYA+ G +  A  VF+ +   D V+WN+M+ A  Q+G G  A+  +E+M K G+  ++
Sbjct: 184 LDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQ 243

Query: 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579
           ITFL++L+AC+H GLVKEG++YF+ M   + + P  DHY   +DLL RAG  ++A   I 
Sbjct: 244 ITFLSILTACSHGGLVKEGKQYFDMMK-EHNLEPEIDHYVTVVDLLGRAGLLNDALVFIF 302

Query: 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639
            +P KP+A +W ALL  CR+H N  +G  AA+ +F+L P   G  VLL N+YA+ G+WD 
Sbjct: 303 KMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDA 362

Query: 640 AARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGY 699
           AARVRK+M+  GVKKEP CSW+E++N VH+F+ +D  HP ++ +YK  E++ +++RK GY
Sbjct: 363 AARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGY 422

Query: 700 VPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKF 759
           VP+T +VL  ++  +++  L  HSEK+A+AF L+ +P GAT+R++KN+RICGDCH+AF++
Sbjct: 423 VPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRY 482

Query: 760 MSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +SKV  REIVVRD  RFHHF  G CSCGDYW
Sbjct: 483 ISKVFEREIVVRDTNRFHHFSSGSCSCGDYW 513



 Score =  108 bits (271), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 143/312 (45%), Gaps = 40/312 (12%)

Query: 109 LKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQ 168
           +  RD   + ++I  Y+ N     A+ L   M R   KP+ FTF S+L A A        
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKA-AGASASSGI 59

Query: 169 CMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSW 228
             Q+H   VK        V +AL+ +Y +C           M  A  VFD++  ++ +SW
Sbjct: 60  GEQIHALTVKYDWHDDVYVGSALLDMYARC---------GRMDMAIAVFDQLESKNGVSW 110

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSV 288
             ++ G+ +    +        M  N          G+            +   FTY+SV
Sbjct: 111 NALIAGFARKGDGETTLLMFAEMQRN----------GF------------EATHFTYSSV 148

Query: 289 ISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
            SA A  G    GK VHA+++++  +     S  V N ++ +Y K G + +AR +F+ + 
Sbjct: 149 FSAIAGIGALEQGKWVHAHMIKSGER----LSAFVGNTILDMYAKSGSMIDARKVFDHVD 204

Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE----RNLLSWTVMISGLAQNGYGEEGLK 404
           ++DLV+WN++L+A+   GL  EA + FE MR+     N +++  +++  +  G  +EG +
Sbjct: 205 KKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQ 264

Query: 405 LFSQMRLEGFKP 416
            F  M+    +P
Sbjct: 265 YFDMMKEHNLEP 276



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 137/283 (48%), Gaps = 39/283 (13%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+   + L+  Y+    + +A  +F++  L+ ++ V +NA+I  ++   +G   + +F +
Sbjct: 75  DVYVGSALLDMYARCGRMDMAIAVFDQ--LESKNGVSWNALIAGFARKGDGETTLLMFAE 132

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M+R+  +  +FT++SV SA+A I   E Q   +H  ++KSG  L   V N ++ +Y K  
Sbjct: 133 MQRNGFEATHFTYSSVFSAIAGIGALE-QGKWVHAHMIKSGERLSAFVGNTILDMYAKSG 191

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
           S         M  AR+VFD + ++D ++W +M+T + +       RE +    E      
Sbjct: 192 S---------MIDARKVFDHVDKKDLVTWNSMLTAFAQ---YGLGREAVTHFEE------ 233

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                        M    + L++ T+ S+++AC++ GL + GKQ   + +  E    PE 
Sbjct: 234 -------------MRKCGVHLNQITFLSILTACSHGGLVKEGKQY--FDMMKEHNLEPEI 278

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSA 361
              V   +V L  + G +N+A     +MP +   + W A+L +
Sbjct: 279 DHYVT--VVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGS 319



 Score = 59.7 bits (143), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 35/141 (24%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + VHAHMI SG +    + N ++D+Y KS  ++ AR +FD + + D+V           
Sbjct: 161 GKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVT---------- 210

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                                  +N+M+TA++    G  A+  F +MR+  V  +  TF 
Sbjct: 211 -----------------------WNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFL 247

Query: 154 SVLSALAL--IVEEEKQCMQM 172
           S+L+A +   +V+E KQ   M
Sbjct: 248 SILTACSHGGLVKEGKQYFDM 268


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/544 (41%), Positives = 318/544 (58%), Gaps = 14/544 (2%)

Query: 257 VAWNALISGY---------VHRELKMLMLRIQLDEFTYTSVISACANSGL-FRLGKQVHA 306
           VAWNALISG+             + M          TY SV+SAC        LG QVH 
Sbjct: 88  VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHG 147

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366
            ++ +   P     L V NALV +Y +C  +  A  +F+ M  R +VSW ++LS     G
Sbjct: 148 RVVGSGVLP----DLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLG 203

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
            +DEA+ LF+ M ER+ +SWT MI G        E L++F +M+       ++     IT
Sbjct: 204 QVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVIT 263

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
           +CA LGALE G  +   +   G       GNALI MY++CG +E A  VF  M + D  +
Sbjct: 264 ACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFT 323

Query: 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546
           W A+I  L  +G    AIE++ +M++    PD +TF+ VL+AC HAGLV +GR +F +M 
Sbjct: 324 WTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMI 383

Query: 547 GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLG 606
             Y I P   HY   IDLL RAGK +EA D ID +P  P++ IW  LLA CR+HGN ++G
Sbjct: 384 EAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIG 443

Query: 607 IQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNK 666
              AE+L +L P ++  Y+LLSN+YA   RW+D  R+R  + ++G+KKEPGCS IE+D  
Sbjct: 444 ELVAERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGI 503

Query: 667 VHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKL 726
           +H F+  D +HP ++ +Y  LE ++ ++  +GY PD   V  ++   +K+  L  HSEKL
Sbjct: 504 IHEFVAGDQSHPMSKEIYSKLESIISDLNNVGYFPDVTEVFVEVAEKEKKKVLYWHSEKL 563

Query: 727 AVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSC 786
           A+AF L+       +R++KNLR+C DCHNA K +S++ GRE+VVRD  RFHHFR G CSC
Sbjct: 564 AIAFALLSSKPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSC 623

Query: 787 GDYW 790
            DYW
Sbjct: 624 KDYW 627



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 138/494 (27%), Positives = 208/494 (42%), Gaps = 90/494 (18%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           +++ AR+VHAH++  G     H+ + L+  Y        AR L  E   P          
Sbjct: 38  SAAPARAVHAHVVRLGMGRNAHVASSLVAAYTAGGDGAAARALVGECDTP---------- 87

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
                                    V +NA+I+ ++       +   F DM R    P  
Sbjct: 88  -------------------------VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTP 122

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
            T+ SVLSA      +    MQ+H  VV SG      V NAL+ +Y +C           
Sbjct: 123 VTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECAD--------- 173

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV-- 267
           MG+A +VFD M  R  +SWT++++G  +   +D AR+  D M E   V+W A+I GYV  
Sbjct: 174 MGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWA 233

Query: 268 --HREL-----KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
              RE      +M    +  DEFT  SVI+ACA  G   +G+ V  Y+ R   K      
Sbjct: 234 ARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIK----MD 289

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
             V NAL+ +Y KCG +  A D+F  M  RD  +W AI                      
Sbjct: 290 AFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAI---------------------- 327

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
                    I GLA NGY EE +++F +M      P +  F G +T+C   G ++ GR+ 
Sbjct: 328 ---------ILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREF 378

Query: 441 HAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHG 498
              ++ +     ++     +I +  R G +  A    + MP   +S  W  ++AA   HG
Sbjct: 379 FLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHG 438

Query: 499 NGARAIELYEQMLK 512
           N      + E++L+
Sbjct: 439 NSEIGELVAERLLE 452



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 164/352 (46%), Gaps = 49/352 (13%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y S L  C  +      L   VH  ++ SG  P   + N L+D+Y +   +  A  +FD 
Sbjct: 125 YVSVLSACG-KGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDG 183

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +    +V+ T+L++  +    V  AR++F++ P   RDTV + AMI  Y   +    A+E
Sbjct: 184 MQVRSVVSWTSLLSGLARLGQVDEARDLFDRMP--ERDTVSWTAMIDGYVWAARFREALE 241

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
           +FR+M+  +V  D FT  SV++A A L   E  + ++++ +  + G  +   V NALI +
Sbjct: 242 MFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMS--RQGIKMDAFVGNALIDM 299

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           Y KC S         +  A  VF  M  RD+ +WT ++ G   N Y + A E        
Sbjct: 300 YSKCGS---------IERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMF------ 344

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
                        HR   M+ +    DE T+  V++AC ++GL   G++   +L   EA 
Sbjct: 345 -------------HR---MIRVSETPDEVTFIGVLTACTHAGLVDKGREF--FLSMIEA- 385

Query: 315 PTPEFSLPVN----NALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
               +++  N      ++ L  + GK+ EA D  +QMP   +   W  +L+A
Sbjct: 386 ----YNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAA 433


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 253/722 (35%), Positives = 380/722 (52%), Gaps = 89/722 (12%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+     L+  Y     V+ AR +F+K  +  RD V ++ MI + S N     A+EL R+
Sbjct: 128 DVFVGNALMLMYGECACVEYARLVFDK--MMERDVVSWSTMIRSLSRNKEFDMALELIRE 185

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSV--LNALISVYVK 197
           M    V+P      S+++  A      +    MH  V+++       V    AL+ +Y K
Sbjct: 186 MNFMQVRPSEVAMVSMVNLFA-DTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAK 244

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C                                         +L  AR+  +G+++   V
Sbjct: 245 C----------------------------------------GHLGLARQLFNGLTQKTVV 264

Query: 258 AWNALISGYVH----RELKMLMLRIQLD-----EFTYTSVISACANSGLFRLGKQVHAYL 308
           +W A+I+G +      E   L +R+Q +     E T  S+I  C  +G  +LGKQ+HAY+
Sbjct: 265 SWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYI 324

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
           LR         SL +  ALV +Y KC  +  AR                           
Sbjct: 325 LRNGFS----VSLALATALVDMYGKCSDIRNAR--------------------------- 353

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
               +LF++ + R+++ WT M+S  AQ    ++   LF QMR  G +P        ++ C
Sbjct: 354 ----ALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLC 409

Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
           A  GAL+ G+ +H+ +     +       AL+ MYA+CG + AA  +F    + D   WN
Sbjct: 410 AVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWN 469

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP 548
           A+I     HG G  A++++ +M ++G+ P+ ITF+ +L AC+HAGLV EG++ FE M   
Sbjct: 470 AIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHT 529

Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
           +G+ P  +HY   +DLL RAG   EA ++I S+P KP+  +W AL+A CR+H N  LG  
Sbjct: 530 FGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGEL 589

Query: 609 AAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVH 668
           AA QL ++ P + G  VL+SN+YA   RW DAA VRK M+  G+KKEPG S IEV+  VH
Sbjct: 590 AATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVH 649

Query: 669 VFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAV 728
            FL+ D +HP+ + + + L ++  ++ + GYVPDT  VL +++ ++KE AL+ HSEKLA+
Sbjct: 650 EFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAM 709

Query: 729 AFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788
           AFGL+       +R++KNLR+C DCH A K +SK+ GR I+VRD  RFHHFR+G CSCGD
Sbjct: 710 AFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGD 769

Query: 789 YW 790
           YW
Sbjct: 770 YW 771



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 181/391 (46%), Gaps = 65/391 (16%)

Query: 149 NFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
           NF   SVL A    V   +   ++H  V+K G      V NAL+ +Y +C    +     
Sbjct: 94  NFMAPSVLKACGQ-VSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEY----- 147

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
               AR VFD+M ERD +SW+TM+    +N   D A E +                    
Sbjct: 148 ----ARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELI-------------------- 183

Query: 269 RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALV 328
           RE+  + +R    E    S+++  A++   R+GK +HAY++R          +P   AL+
Sbjct: 184 REMNFMQVRPS--EVAMVSMVNLFADTANMRMGKAMHAYVIRN--SNNEHMGVPTTTALL 239

Query: 329 TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV 388
            +Y KCG +  AR +FN + ++ +VSW A+++  + +  ++E   LF  M+E N+     
Sbjct: 240 DMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIF---- 295

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG 448
                                      P +      I  C   GAL+ G+QLHA ++ +G
Sbjct: 296 ---------------------------PNEITMLSLIVECGFTGALQLGKQLHAYILRNG 328

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
           +  SL+   AL+ MY +C  +  A  +F++  N D + W AM++A  Q     +A  L++
Sbjct: 329 FSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFD 388

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
           QM   G+ P ++T +++LS C  AG +  G+
Sbjct: 389 QMRTSGVRPTKVTIVSLLSLCAVAGALDLGK 419



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 120/478 (25%), Positives = 209/478 (43%), Gaps = 118/478 (24%)

Query: 33  LARSVHAHMISSGFKPREHI----INRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLI 88
           + +++HA++I +     EH+       L+D+Y K   L  AR LF+ + Q  +V+ T +I
Sbjct: 213 MGKAMHAYVIRN--SNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMI 270

Query: 89  AAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPD 148
           A    S+ ++                                    +LF  M+ +++ P+
Sbjct: 271 AGCIRSNRLE---------------------------------EGTKLFIRMQEENIFPN 297

Query: 149 NFTFTSVLSALALIVE-----EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
             T       L+LIVE       +   Q+H  ++++G  +  ++  AL+ +Y KC     
Sbjct: 298 EITM------LSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKC----- 346

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
               S +  AR +FD    RD + WT M++ Y + + +D A    D M            
Sbjct: 347 ----SDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMR----------T 392

Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
           SG            ++  + T  S++S CA +G   LGK VH+Y+     K   E    +
Sbjct: 393 SG------------VRPTKVTIVSLLSLCAVAGALDLGKWVHSYI----DKERVEVDCIL 436

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
           N ALV +Y KCG +N A  +F +   RD+  WNAI++                       
Sbjct: 437 NTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIIT----------------------- 473

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
                   G A +GYGEE L +F++M  +G KP D  F G + +C+  G +  G++L  +
Sbjct: 474 --------GFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEK 525

Query: 444 LVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
           +VH+ G    +     ++ +  R G+++ A+ +  +MP   +++ W A++AA   H N
Sbjct: 526 MVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKN 583



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 142/333 (42%), Gaps = 39/333 (11%)

Query: 283 FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARD 342
           F   SV+ AC      +LGK++H ++L    K   +  + V NAL+ +Y +C  V  AR 
Sbjct: 95  FMAPSVLKACGQVSWTQLGKEIHGFVL----KKGLDRDVFVGNALMLMYGECACVEYARL 150

Query: 343 IFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG 402
           +F++M ERD+VS                               W+ MI  L++N   +  
Sbjct: 151 VFDKMMERDVVS-------------------------------WSTMIRSLSRNKEFDMA 179

Query: 403 LKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS--AGNALI 460
           L+L  +M     +P + A    +   A    +  G+ +HA ++ +  +  +      AL+
Sbjct: 180 LELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALL 239

Query: 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI 520
            MYA+CG +  A  +FN +     VSW AMIA   +        +L+ +M +E I P+ I
Sbjct: 240 DMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEI 299

Query: 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580
           T L+++  C   G ++ G++    +    G           +D+  +      A+ + DS
Sbjct: 300 TMLSLIVECGFTGALQLGKQLHAYIL-RNGFSVSLALATALVDMYGKCSDIRNARALFDS 358

Query: 581 LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
              +    IW A+L+       ID      +Q+
Sbjct: 359 TQNR-DVMIWTAMLSAYAQANCIDQAFNLFDQM 390



 Score = 55.8 bits (133), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 103/238 (43%), Gaps = 30/238 (12%)

Query: 40  HMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQP----DIVARTTLIAAYSASD 95
            M +SG +P +  I  L+ +   +  L   + +   I +     D +  T L+  Y+   
Sbjct: 389 QMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCG 448

Query: 96  NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV 155
           ++  A  +F +     RD   +NA+IT ++ +  G  A+++F +M R  VKP++ TF  +
Sbjct: 449 DINAAGRLFIEAI--SRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGL 506

Query: 156 LSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV----YVKCVSSPFVSSRSLMG 211
           L A +            H  +V  G  LF  +++    V    +  C+    +    L+ 
Sbjct: 507 LHACS------------HAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVD-LLGRAGLLD 553

Query: 212 AARRVFDEMPER-DELSWTTMMTG--YVKNDYLD--AAREFLDGMSENVGVAWNALIS 264
            A  +   MP + + + W  ++      KN  L   AA + L+   EN G  +N L+S
Sbjct: 554 EAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCG--YNVLMS 609


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 246/667 (36%), Positives = 372/667 (55%), Gaps = 69/667 (10%)

Query: 124 YSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGL 183
           +S   +  +A+ +FR +     +PD+ TFT  LSA A +  + +    +      +G   
Sbjct: 84  HSRRGSPASALRVFRALP-PAARPDSTTFTLALSACARL-GDLRGGESVRDRAFDAGYKD 141

Query: 184 FTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDA 243
              V ++L+ +Y +            MG A +VF  MP RD ++W+TM+ G+V      +
Sbjct: 142 DVFVCSSLLHLYARW---------GAMGDAVKVFVRMPRRDRVTWSTMVAGFV------S 186

Query: 244 AREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ 303
           A + LD +               ++R  +M    ++ DE     VI AC  +   R+G  
Sbjct: 187 AGQPLDAIQ--------------MYR--RMREDGVKGDEVVMIGVIQACTAARNVRMGAS 230

Query: 304 VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV 363
           VH +LLR   +                                    D+V+  +++  Y 
Sbjct: 231 VHGHLLRHGMR-----------------------------------MDVVTATSLVDMYA 255

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
             GL+D A  +F  M  RN +SW+ MISG AQNG  +E L+LF  M+  G +P   A   
Sbjct: 256 KNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVS 315

Query: 424 AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
           A+ +C+ +G L+ GR +H  +V   +D +   G A I MY++CG + +A  +FN + + D
Sbjct: 316 ALLACSNIGFLKLGRSVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRD 374

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFE 543
            + WNAMIA  G HG G  A+ L+++M + G+ PD  TF ++LSA +H+GLV+EG+ +F 
Sbjct: 375 LILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFG 434

Query: 544 TMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNI 603
            M   + I P E HY   +DLL R+G   EA D++ S+  +P+  IW ALL+GC  +  +
Sbjct: 435 RMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKL 494

Query: 604 DLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEV 663
           +LG   A+ + +L P   G   L+SN+YA   +WD   +VRKLM+D G KK PGCS IE+
Sbjct: 495 ELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEI 554

Query: 664 DNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHS 723
               HVF+++D +HP+ + +   + +L LEMRK+GY+P T+FV HD+E + KE  LS HS
Sbjct: 555 RGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHS 614

Query: 724 EKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGK 783
           E+LA+AFGL+    G  + ++KNLR+CGDCH+A K++SK+  REIVVRD KRFHHF+DG 
Sbjct: 615 ERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGV 674

Query: 784 CSCGDYW 790
           CSC DYW
Sbjct: 675 CSCRDYW 681



 Score = 66.2 bits (160), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 133/303 (43%), Gaps = 41/303 (13%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+V  T+L+  Y+ +  + +A  +F    +  R+ V ++AMI+ ++ N     A+ LFR+
Sbjct: 243 DVVTATSLVDMYAKNGLLDVACRVFGL--MVHRNDVSWSAMISGFAQNGQSDEALRLFRN 300

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL-NALISVYVKC 198
           M+   ++PD+    S L A + I    K    +H  +V+     F  +L  A I +Y KC
Sbjct: 301 MQASGIQPDSGALVSALLACSNI-GFLKLGRSVHGFIVRRFD--FNCILGTAAIDMYSKC 357

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
            S         + +A+ +F+ + +RD + W  M+     +     A      M+E     
Sbjct: 358 GS---------LASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNET---- 404

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                              ++ D  T+ S++SA ++SGL   GK     ++    K TP 
Sbjct: 405 ------------------GMRPDHATFASLLSALSHSGLVEEGKLWFGRMV-NHFKITPA 445

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSAYVSAGLIDEAKSLFEA 377
               V   LV L  + G V EA D+   M     V+ W A+LS  ++   ++  +S+ + 
Sbjct: 446 EKHYV--CLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADN 503

Query: 378 MRE 380
           + E
Sbjct: 504 ILE 506



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 26/183 (14%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           T  I  YS   ++  A+ +FN   +  RD + +NAMI     +  G  A+ LF++M    
Sbjct: 348 TAAIDMYSKCGSLASAQMLFNM--ISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETG 405

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV-----YVKCV 199
           ++PD+ TF S+LSAL+            H  +V+ G   F  ++N          YV  V
Sbjct: 406 MRPDHATFASLLSALS------------HSGLVEEGKLWFGRMVNHFKITPAEKHYVCLV 453

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELS-WTTMMTGYVKNDYLDAAREFLDGMSE----N 254
               ++   L+  A  +   M     ++ W  +++G + N  L+      D + E    +
Sbjct: 454 D--LLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDD 511

Query: 255 VGV 257
           VGV
Sbjct: 512 VGV 514


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 259/761 (34%), Positives = 398/761 (52%), Gaps = 89/761 (11%)

Query: 40   HMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEI--PQPDIV---ARTTLIAAYSAS 94
            HM+ +G  P +     +++    S  L + R +   I   + D V     T L++ Y   
Sbjct: 427  HMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKC 486

Query: 95   DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
             ++  A  +F + PL  R  V +N M+ AY+ N     A     +M +  V PD  +FTS
Sbjct: 487  GSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTS 546

Query: 155  VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
            VLS+      +E Q ++M   +++SG      +  ALIS++ +C           +  AR
Sbjct: 547  VLSSC--YCSQEAQVLRM--CILESGY-RSACLETALISMHGRCRE---------LEQAR 592

Query: 215  RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
             VFDEM   D +SWT M++   +N      R+F                     +E+  L
Sbjct: 593  SVFDEMDHGDVVSWTAMVSATAEN------RDF---------------------KEVHHL 625

Query: 275  MLRIQL-----DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
              R+QL     D+FT  + +  C +S    LGK +HA +         E  L        
Sbjct: 626  FRRMQLEGVIPDKFTLATTLDTCLDSTTLGLGKIIHACV--------TEIGL-------- 669

Query: 330  LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
                               E D+   NA+L+ Y + G   EA S FE M+ R+L+SW +M
Sbjct: 670  -------------------EADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIM 710

Query: 390  ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
             +  AQ G  +E + LF  M+LEG KP    F+  +    G   + +G+  H     SG 
Sbjct: 711  SAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHGLAAESGL 770

Query: 450  DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
            DS +S    L+ +YA+CG ++ A  +F        V  NA+I AL QHG    A++++ +
Sbjct: 771  DSDVSVATGLVKLYAKCGKLDEAISLFRGACQWTVVLLNAIIGALAQHGFSEEAVKMFWK 830

Query: 510  MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
            M +EG+ PD  T ++++SAC HAG+V+EG   F TM   +GI P  +HYA F+DLL RAG
Sbjct: 831  MQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAG 890

Query: 570  KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629
            +   A+ +I  +PF+ +  +W +LL  C++ G+ +LG + A+++ +L PH++  +V+LSN
Sbjct: 891  QLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSN 950

Query: 630  MYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQ 689
            +Y   G+W DA   RK + D+ VK  PG SW+E+  +VH F+  D +HP+   +Y  L++
Sbjct: 951  IYCATGKWKDADVDRKKLLDQNVKNAPGMSWLEIGKQVHEFVAGDRSHPQTDEIYVVLDK 1010

Query: 690  LVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRI 749
            L L MR+ GY  D      D E + KE AL  HSE++A+AFGL+  P   T++++KNLR+
Sbjct: 1011 LELLMRRAGYEADKGL---DAEDELKEKALGYHSERIAIAFGLIATPPDTTLKIVKNLRV 1067

Query: 750  CGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            CGDCH A K++S ++GREI+VRD  RFHHF +G CSC D W
Sbjct: 1068 CGDCHTATKYISMIMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 186/792 (23%), Positives = 308/792 (38%), Gaps = 148/792 (18%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF 73
             Y + LQ C   N +     +  H  + ++G +    + N LI++Y +   L  A  +F
Sbjct: 26  QEYTALLQSCVDSNDLAK--GKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIF 83

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
            ++ + ++V+ T LI+A                           NA   A++       A
Sbjct: 84  SKMEERNVVSWTALISA---------------------------NAQSGAFAR------A 110

Query: 134 IELFRDMR-RDDVKPDNFTFTSVLSALA----LIVEEEKQCMQMHCTVVKSGTGLFTSVL 188
             LFR M       P+++T  ++L+A A    L +      M     + +  T   T V 
Sbjct: 111 FALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERESTTA-TLVG 169

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND--YLDAARE 246
           NA+I++Y KC S            A  VF  +PE+D +SWT M   Y +    Y DA R 
Sbjct: 170 NAMINMYAKCGSPE---------DAIAVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRI 220

Query: 247 FLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
           F                     RE  ML+  +  +  T+ + + AC +    R G  +H+
Sbjct: 221 F---------------------RE--MLLQPLAPNVITFITALGACTS---LRDGTWLHS 254

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER---DLVSWNAILSAYV 363
            L     +    F     NAL+ +Y KCG    A  +F  M  R   DLVSWNA++SA V
Sbjct: 255 LL----HEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASV 310

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
            AG                            ++G   + + +F ++RLEG +P       
Sbjct: 311 EAG----------------------------RHG---DAMAIFRRLRLEGMRPNSVTLIT 339

Query: 424 AITSCAGLGA-LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-N 481
            + + A  G      R+ H ++  SGY   +  GNA+I+MYA+CG   AA  VF  +   
Sbjct: 340 ILNALAASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWK 399

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY 541
            D +SWN M+ A     +  + +  +  ML  GI P++++F+ +L+AC+++  +  GR+ 
Sbjct: 400 CDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKI 459

Query: 542 FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI-WEALLAGCRIH 600
              +                + +  + G  +EA+ V   +P    + + W  +L     +
Sbjct: 460 HSLILTRRRDYVESSVATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQN 519

Query: 601 GNIDLGIQAAEQLFQ--LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG------- 651
                   A  ++ Q  ++P       +LS+ Y +     +A  +R  + + G       
Sbjct: 520 DRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCS----QEAQVLRMCILESGYRSACLE 575

Query: 652 ---VKKEPGCSWIE-----VDNKVHVFLVDDTAHPEAQAV---YKYLEQLVLEMRKLGYV 700
              +     C  +E      D   H  +V  TA   A A    +K +  L   M+  G +
Sbjct: 576 TALISMHGRCRELEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVI 635

Query: 701 PDTKFVLH---DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAF 757
           PD KF L    D   D     L           GL +        +L     CGD   A 
Sbjct: 636 PD-KFTLATTLDTCLDSTTLGLGKIIHACVTEIGL-EADIAVENALLNMYSNCGDWREAL 693

Query: 758 KFMSKVVGREIV 769
            F   +  R++V
Sbjct: 694 SFFETMKARDLV 705



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 153/344 (44%), Gaps = 53/344 (15%)

Query: 265 GYVHRELKMLMLRIQLDEFT----YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
           G + R+L  L   +++D       YT+++ +C +S     GK+ H  +    A    E  
Sbjct: 4   GLIIRQLCSLSGAVRVDRAADLQEYTALLQSCVDSNDLAKGKRAHELI----ANAGLEQH 59

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           L + N L+ +Y +CG + EA  IF++M ER++VSW A++SA                   
Sbjct: 60  LFLGNCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISAN------------------ 101

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSCAGLGALENGRQ 439
                        AQ+G       LF  M LE    P  Y     + +CA    L  GR 
Sbjct: 102 -------------AQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRS 148

Query: 440 LHAQLVHSGYD----SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
           +HA +   G +    ++   GNA+I MYA+CG  E A  VF T+P  D VSW AM  A  
Sbjct: 149 IHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGAYA 208

Query: 496 QHGNG-ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH-GPYGIPP 553
           Q       A+ ++ +ML + + P+ ITF+T L AC     +++G      +H    G  P
Sbjct: 209 QERRFYPDALRIFREMLLQPLAPNVITFITALGACTS---LRDGTWLHSLLHEAGLGFDP 265

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI--WEALLA 595
              +    I++  + G +  A  V  ++  +    +  W A+++
Sbjct: 266 LAGN--ALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMIS 307


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 267/770 (34%), Positives = 409/770 (53%), Gaps = 86/770 (11%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSL------KLVYARTLFDEIPQPDIVARTTL 87
           A  V   MI  GF P        I    +S+      + V+   +   +    +     L
Sbjct: 85  ACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGL 144

Query: 88  IAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147
           I  Y+   ++  AR +F    +  +D+V +N+MIT    N     A++ +  MR+  + P
Sbjct: 145 INMYAKCGDIDHARSVFG--LMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMP 202

Query: 148 DNFTFTSVLSALALIVEEEKQCM----QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
            NF   S LS+ A +      C+    Q H   +K G  +  SV N L+++Y +      
Sbjct: 203 SNFALISALSSCASL-----GCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAE------ 251

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
               S +   ++VF  M ERD++SW T++     +                      A +
Sbjct: 252 ---TSRLAECQKVFSWMLERDQVSWNTVIGALADS---------------------GASV 287

Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
           S  +   L+M+      +  T+ ++++  ++    +L  Q+HA +L+   K         
Sbjct: 288 SEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKD-------- 339

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER-N 382
           +NA+                            NA+L+ Y  +G ++  + +F  M ER +
Sbjct: 340 DNAIE---------------------------NALLACYGKSGEMENCEEIFSRMSERRD 372

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
            +SW  MISG   N    + + L   M   G +   + FA  +++CA +  LE G ++HA
Sbjct: 373 EVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHA 432

Query: 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
             + +  +S +  G+AL+ MY++CG ++ A+  FN MP  +  SWN+MI+   +HG+G  
Sbjct: 433 CAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDN 492

Query: 503 AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562
           A+ L+ +M   G LPD ITF+ VLSAC+H GLV EG  YF++M   YG+ P  +HY+  +
Sbjct: 493 ALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMV 552

Query: 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL-AGCRIHG-NIDLGIQAAEQLFQLMPHH 620
           DLL RAG+  + ++ I+ +P KP+  IW  +L A CR +G   +LG +AAE LF + P +
Sbjct: 553 DLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFNMDPQN 612

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEA 680
           A  YVLLSNMYA+ G+W+D AR R+ MR+  VKKE GCSW+ + + VHVF+  D +HPE 
Sbjct: 613 AVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWVTMKDGVHVFVAGDNSHPEK 672

Query: 681 QAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT 740
             +Y  L++L  ++R  GYVP  KF L+D+E + KE  LS HSEKLAVAF L +   G  
Sbjct: 673 GLIYAKLKELDKKIRDAGYVPQIKFALYDLEPENKEELLSYHSEKLAVAFVLTR-NSGLP 731

Query: 741 VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +R++KNLR+CGDCH+AFK++SKVV R IV+RD  RFHHF DGKCSC DYW
Sbjct: 732 IRIMKNLRVCGDCHSAFKYISKVVDRSIVLRDSNRFHHFEDGKCSCRDYW 781



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 113/361 (31%), Positives = 176/361 (48%), Gaps = 75/361 (20%)

Query: 173 HCTVVKSGTGLFTSVLNALISVYVK---CVSSPFVSSRSLMGAARRVFDEMPERDELSWT 229
           H  V+K G      + N LI+VYV+   CVS            AR++FDEMP+R+ ++W 
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVS------------ARKLFDEMPDRNGVTWA 70

Query: 230 TMMTGYVKNDYLDAAREFLDGMSENV-GVAWNALISGYVHRELKMLMLRIQLDEFTYTSV 288
            +++GY +N           GM E+  GV    +  G++             + F + S 
Sbjct: 71  CLISGYTQN-----------GMPEDACGVLKEMIFEGFLP------------NRFAFGSA 107

Query: 289 ISACANSGLFRL-GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           I AC  S L+R  G+QVH Y +RT      +  + V N L+ +Y KCG ++ AR +F  M
Sbjct: 108 IRACQESMLWRRKGRQVHGYAIRT---GLNDAKVAVGNGLINMYAKCGDIDHARSVFGLM 164

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
            ++D VSWN+                               MI+GL QN   E+ +K ++
Sbjct: 165 VDKDSVSWNS-------------------------------MITGLDQNKCFEDAVKSYN 193

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467
            MR  G  P ++A   A++SCA LG +  G+Q H + +  G D  +S  N L+ +YA   
Sbjct: 194 SMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETS 253

Query: 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG-ARAIELYEQMLKEGILPDRITFLTVL 526
            +     VF+ M   D VSWN +I AL   G   + AIE++ +M++ G  P+R+TF+ +L
Sbjct: 254 RLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLL 313

Query: 527 S 527
           +
Sbjct: 314 A 314



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 144/623 (23%), Positives = 257/623 (41%), Gaps = 111/623 (17%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           A   H +++  GF     + N LI++Y +    V AR LFDE+  PD             
Sbjct: 19  ANLFHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEM--PD------------- 63

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                             R+ V +  +I+ Y+ N     A  + ++M  +   P+ F F 
Sbjct: 64  ------------------RNGVTWACLISGYTQNGMPEDACGVLKEMIFEGFLPNRFAFG 105

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSG-TGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
           S + A    +   ++  Q+H   +++G      +V N LI++Y KC           +  
Sbjct: 106 SAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGD---------IDH 156

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           AR VF  M ++D +SW +M+TG  +N   + A +  + M +                   
Sbjct: 157 ARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKT------------------ 198

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                +    F   S +S+CA+ G   LG+Q H   +    K   +  + V+N L+ LY 
Sbjct: 199 ----GLMPSNFALISALSSCASLGCILLGQQTHGEGI----KLGLDMDVSVSNTLLALYA 250

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           +  ++ E + +F+ M ERD VSWN ++ A     L D   S+ EA               
Sbjct: 251 ETSRLAECQKVFSWMLERDQVSWNTVIGA-----LADSGASVSEA--------------- 290

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
                     +++F +M   G+ P    F   + + + L   +   Q+HA ++       
Sbjct: 291 ----------IEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDD 340

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPN-VDSVSWNAMIAALGQHGNGARAIELYEQML 511
            +  NAL+  Y + G +E    +F+ M    D VSWN+MI+    +    +A++L   M+
Sbjct: 341 NAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMM 400

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY---ARFIDLLCRA 568
           + G   D  TF TVLSAC     ++ G      +H        E      +  +D+  + 
Sbjct: 401 QRGQRLDCFTFATVLSACATVATLECGME----VHACAIRACLESDVVIGSALVDMYSKC 456

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID--LGIQAAEQLFQLMPHHAGTYVL 626
           G+   A    + +P + +   W ++++G   HG+ D  L +    +L   +P H  T+V 
Sbjct: 457 GRIDYASRFFNLMPVR-NLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHI-TFVG 514

Query: 627 LSNMYANLGRWDDAARVRKLMRD 649
           + +  +++G  D+     K M +
Sbjct: 515 VLSACSHIGLVDEGFEYFKSMTE 537



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 101/403 (25%), Positives = 176/403 (43%), Gaps = 64/403 (15%)

Query: 32  SLARSVHAHMISSGFKP-REHIINRLIDIYCKSL-KL---VYARTLFDEIPQPDIVARTT 86
           S A  V   M+ +G+ P R   IN L  +   S  KL   ++A  L   + + D      
Sbjct: 288 SEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNV-KDDNAIENA 346

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           L+A Y  S  ++   E+F++   + RD V +N+MI+ Y HN     A++L   M +   +
Sbjct: 347 LLACYGKSGEMENCEEIFSRMSER-RDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQR 405

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
            D FTF +VLSA A +   E   M++H   +++       + +AL+ +Y KC    + S 
Sbjct: 406 LDCFTFATVLSACATVATLECG-MEVHACAIRACLESDVVIGSALVDMYSKCGRIDYAS- 463

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
                   R F+ MP R+  SW +M++GY ++ + D                 NAL    
Sbjct: 464 --------RFFNLMPVRNLYSWNSMISGYARHGHGD-----------------NAL---- 494

Query: 267 VHRELKMLMLRIQL-DEFTYTSVISACANSGL-------FRLGKQVHAYLLRTEAKPTPE 318
             R    + L  QL D  T+  V+SAC++ GL       F+   +V+  + R E      
Sbjct: 495 --RLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHY---- 548

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSAYVSAG-----LIDEAK 372
                 + +V L  + G++++  +  N+MP + +++ W  +L A          L   A 
Sbjct: 549 ------SCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRGNGRKTELGRRAA 602

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
            +   M  +N +++ ++ +  A  G  E+  +    MR    K
Sbjct: 603 EMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVK 645


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 247/716 (34%), Positives = 384/716 (53%), Gaps = 45/716 (6%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + D+  +  LI  Y+   ++    ++F    +  R+ V + ++I  Y+       A+ LF
Sbjct: 163 EEDVFIQNCLIHFYAECGHMDHGHKVFEG--MSERNVVSWTSLICGYARGDRPKEAVSLF 220

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVE---EEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
            +M    ++P + T   V+SA A + +    E+ C      + + G  L   ++NAL+ +
Sbjct: 221 FEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVC----AYIGELGLKLNKVMVNALVDM 276

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           Y+KC           + AA+R+FDE  +R+ + + T+++ Y +      A   LD     
Sbjct: 277 YMKC---------GAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILD----- 322

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
                            +ML    + D  T  S ISA A       GK  H Y++R   +
Sbjct: 323 -----------------EMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLE 365

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
                   + N ++ +Y KCGK   A  +F+ M  + +VSWN++ + ++  G ++ A  +
Sbjct: 366 GWDS----IGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEV 421

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
           F  + ERN + W  MISGL Q    E+ ++LF +M+ EG K       G  ++C  LGA 
Sbjct: 422 FNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAP 481

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
           E  + +H  +  +G    +    AL+ M+ARCG  ++A  VFN M   D  +W A I  +
Sbjct: 482 ELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTM 541

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
              GNG  A  L+ QML +G+ PD + F+ VL+AC+H G V++G   F  M   +GI P 
Sbjct: 542 AMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLME-DHGISPQ 600

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
            +HY   +DLL RAG   EA D+I S+P +P+  +W +LLA CR+H N+++   AAE++ 
Sbjct: 601 IEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERIN 660

Query: 615 QLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDD 674
           +L P  AG +VLLSN+YA+ G+W D ARVR  +R++GV+K PG S ++V+  +H F   D
Sbjct: 661 ELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGD 720

Query: 675 TAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMK 734
            +HPE   +   L+++       G++PD   VL D++  +KEY LS HSEKLA+AFGL+ 
Sbjct: 721 ESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIA 780

Query: 735 LPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
                 +RV+KNLR+C DCH+  K  S +  REI+VRD  RFH FR G CSC DYW
Sbjct: 781 TGRSMPIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 836



 Score =  177 bits (448), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 166/642 (25%), Positives = 265/642 (41%), Gaps = 118/642 (18%)

Query: 53  INRLIDIYCKSLKLVYARTLFDEIPQP--DIVARTTLIAAYSASDNVKLAREMFNKTPLK 110
           +N+L  ++C+       +   D+IP     +V     IA+  + D  + A E+F K  ++
Sbjct: 38  LNQLKQLHCQ-----ITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELF-KEDVR 91

Query: 111 MRDTVF-YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC 169
             D +F  N++I  YS    G  AI L+  M    V P+++TF  VLS    I     + 
Sbjct: 92  SDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAF-CEG 150

Query: 170 MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWT 229
           +Q+H +VVK G      + N LI  Y +C           M    +VF+ M ER+ +SWT
Sbjct: 151 IQVHGSVVKMGLEEDVFIQNCLIHFYAEC---------GHMDHGHKVFEGMSERNVVSWT 201

Query: 230 TMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVI 289
           +++ GY + D    A                           +M+   I+    T   VI
Sbjct: 202 SLICGYARGDRPKEAVSLF----------------------FEMVEAGIRPSSVTMVCVI 239

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN----NALVTLYWKCGKVNEARDIFN 345
           SACA      +G++V AY+         E  L +N    NALV +Y KCG ++ A+ +F+
Sbjct: 240 SACAKLRDLDMGERVCAYI--------GELGLKLNKVMVNALVDMYMKCGAIDAAKRLFD 291

Query: 346 QMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKL 405
           +  +R+LV +N ILS Y                               A+ G   E L +
Sbjct: 292 ECVDRNLVLYNTILSNY-------------------------------ARQGLAREALAI 320

Query: 406 FSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465
             +M  +G +P       AI++ A L  L  G+  H  ++ +G +   S GN +I MY +
Sbjct: 321 LDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMK 380

Query: 466 CGV-------------------------------VEAANCVFNTMPNVDSVSWNAMIAAL 494
           CG                                VE+A  VFN +P  ++V WN MI+ L
Sbjct: 381 CGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGL 440

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
            Q      AIEL+ +M  EGI  DR+T + + SAC + G   E  ++  T     GIP  
Sbjct: 441 VQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLG-APELAKWVHTYIEKNGIPCD 499

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ-L 613
                  +D+  R G    A  V + +  +  +  W A +    + GN +       Q L
Sbjct: 500 MRLNTALVDMFARCGDPQSAMQVFNKMTERDVSA-WTAAIGTMAMEGNGEGATGLFNQML 558

Query: 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKE 655
            Q +      +V +    ++ G+ +    +  LM D G+  +
Sbjct: 559 IQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMEDHGISPQ 600



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 128/526 (24%), Positives = 223/526 (42%), Gaps = 95/526 (18%)

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVS 205
           + D  T  S L+      +   Q  Q+HC + K+G     S L  L++   +      ++
Sbjct: 18  EADPMTKDSCLNESLRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAE------IA 71

Query: 206 SRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265
           S   +  AR+ F+   E                          D  S++     N+LI G
Sbjct: 72  SPESLDYARKAFELFKE--------------------------DVRSDDALFMLNSLIRG 105

Query: 266 Y----VHRE-----LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
           Y    + RE     ++ML+L +  + +T+  V+S C     F  G QVH  ++    K  
Sbjct: 106 YSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVV----KMG 161

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
            E  + + N L+  Y +CG ++    +F  M ER++VSW +++  Y       EA SLF 
Sbjct: 162 LEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFF 221

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
            M E                                G +P        I++CA L  L+ 
Sbjct: 222 EMVE-------------------------------AGIRPSSVTMVCVISACAKLRDLDM 250

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           G ++ A +   G   +    NAL+ MY +CG ++AA  +F+   + + V +N +++   +
Sbjct: 251 GERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYAR 310

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
            G    A+ + ++ML++G  PDR+T L+ +SA   A LV     Y +  HG Y I  G +
Sbjct: 311 QGLAREALAILDEMLQQGPRPDRVTMLSAISA--SAQLVD--LFYGKVCHG-YVIRNGLE 365

Query: 557 HYAR----FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
            +       ID+  + GK   A  V D +  K     W +L AG   +G+    +++A +
Sbjct: 366 GWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVS-WNSLTAGFIRNGD----VESAWE 420

Query: 613 LFQLMPHHAGTYVLLSNMYANLGR---WDDAARVRKLMRDRGVKKE 655
           +F  +P      V  + M + L +   ++DA  + + M+  G+K +
Sbjct: 421 VFNQIPER--NAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKAD 464



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 153/329 (46%), Gaps = 39/329 (11%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            +  H ++I +G +  + I N +ID+Y K  K   A  +FD +    +V+  +L A +  
Sbjct: 352 GKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIR 411

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
           + +V+ A E+FN+ P   R+ VF+N MI+     S    AIELFR+M+ + +K D  T  
Sbjct: 412 NGDVESAWEVFNQIP--ERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMM 469

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
            + SA   +   E     +H  + K+G      +  AL+ ++ +C   P         +A
Sbjct: 470 GIASACGYLGAPELA-KWVHTYIEKNGIPCDMRLNTALVDMFARC-GDP--------QSA 519

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
            +VF++M ERD  +WT  +               ++G  E     +N           +M
Sbjct: 520 MQVFNKMTERDVSAWTAAIGTMA-----------MEGNGEGATGLFN-----------QM 557

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
           L+  ++ D   +  V++AC++ G    G  +H + L  +   +P+  +     +V L  +
Sbjct: 558 LIQGVKPDVVLFVQVLTACSHGGQVEQG--LHIFSLMEDHGISPQ--IEHYGCMVDLLGR 613

Query: 334 CGKVNEARDIFNQMP-ERDLVSWNAILSA 361
            G + EA D+   MP E + V W ++L+A
Sbjct: 614 AGLLREAFDLIKSMPMEPNDVVWGSLLAA 642


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 264/783 (33%), Positives = 387/783 (49%), Gaps = 117/783 (14%)

Query: 17  ASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEI 76
            S+L+ C      +   A+  H  ++  G     ++IN L+          YA  +F + 
Sbjct: 2   GSELKKCFAWGLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQT 61

Query: 77  PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
           P P+I    TLI    ++D                RD                   A+ +
Sbjct: 62  PHPNIFLYNTLIRGMVSND--------------AFRD-------------------AVSV 88

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           +  MR+    PDNFTF  VL A   +       + +H  V+K+G             V+V
Sbjct: 89  YASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDW---------DVFV 139

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           K                               T ++  Y KN +L  AR+  D + E   
Sbjct: 140 K-------------------------------TGLVCLYSKNGFLTDARKVFDEIPEKNV 168

Query: 257 VAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY 307
           V+W A+I GY+              +L + ++ D FT   ++ AC+  G    G+ +  Y
Sbjct: 169 VSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGY 228

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367
           + R        F   V  +LV +Y KCG                                
Sbjct: 229 M-RESGSVGNVF---VATSLVDMYAKCGS------------------------------- 253

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
           ++EA+ +F+ M E++++ W+ +I G A NG  +E L +F +M+ E  +P  YA  G  ++
Sbjct: 254 MEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSA 313

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
           C+ LGALE G      +    + S+   G ALI  YA+CG V  A  VF  M   D V +
Sbjct: 314 CSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVF 373

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
           NA+I+ L   G+   A  ++ QM+K G+ PD  TF+ +L  C HAGLV +G RYF  M  
Sbjct: 374 NAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSS 433

Query: 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
            + + P  +HY   +DL  RAG   EA+D+I S+P + ++ +W ALL GCR+H +  L  
Sbjct: 434 VFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAE 493

Query: 608 QAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKV 667
              +QL +L P ++G YVLLSN+Y+   RWD+A ++R  +  +G++K PGCSW+EVD  V
Sbjct: 494 HVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVV 553

Query: 668 HVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLA 727
           H FLV DT+HP +  +Y+ LE L  ++R+ GY P T+FVL D+E ++KEY L  HSEKLA
Sbjct: 554 HEFLVGDTSHPLSHKIYEKLESLFKDLREAGYNPTTEFVLFDVEEEEKEYFLGCHSEKLA 613

Query: 728 VAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCG 787
           VAF L+       +RV+KNLR+CGDCH A K +SKV GREI+VRD  RFHHF +G CSC 
Sbjct: 614 VAFALISTGAKDVIRVVKNLRVCGDCHEAIKLVSKVTGREIIVRDNNRFHHFTEGSCSCR 673

Query: 788 DYW 790
           DYW
Sbjct: 674 DYW 676


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 247/710 (34%), Positives = 375/710 (52%), Gaps = 73/710 (10%)

Query: 96  NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV 155
           +VK       KT      ++ +  +I  Y+ +     ++  F  +R   + PD   F S+
Sbjct: 23  HVKQLHAQIVKTTKATPHSLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSL 82

Query: 156 LSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVS--SP---FVSSRS-- 208
           L A  L  +       +H  V++ G        NAL+++Y K     SP   F  +R   
Sbjct: 83  LRASTLF-KHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNH 141

Query: 209 ------LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL 262
                  + + R++FD MP RD +SW T++ G  +N   + A   +  M +         
Sbjct: 142 NNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKE-------- 193

Query: 263 ISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
                          ++ D FT +S++           GK++H Y +R          + 
Sbjct: 194 --------------NLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDK----DVF 235

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
           + ++L+ +Y KC +V  +   F+ +  RD +S                            
Sbjct: 236 IGSSLIDMYAKCTQVELSVCAFHLLSNRDAIS---------------------------- 267

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
              W  +I+G  QNG  ++GL  F +M  E  KP   +F+  I +CA L AL  G+QLHA
Sbjct: 268 ---WNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHA 324

Query: 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT--MPNVDSVSWNAMIAALGQHGNG 500
            ++  G+D +    ++L+ MYA+CG ++ A  +FN   M + D VSW A+I     HG+ 
Sbjct: 325 YIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHA 384

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
             A+ L+E+ML +G+ P  + F+ VL+AC+HAGLV EG +YF +M   +G+ PG +HYA 
Sbjct: 385 LDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAA 444

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
             DLL RAG+  EA D I ++  +P+  +W  LLA CR H NI+L  +   ++  + P +
Sbjct: 445 VADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGN 504

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEA 680
            G +V++SN+Y+   RW DAA++R  MR  G+KK P CSWIEV NKVH FL  D +HP  
Sbjct: 505 MGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYY 564

Query: 681 QAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT 740
             + + L  L+ +M K GYV DT  VLHD++ + K   L THSE+LA+AFG++    G T
Sbjct: 565 DKINEALNILLEQMEKEGYVLDTNEVLHDVDEEHKRDLLRTHSERLAIAFGIISTTSGTT 624

Query: 741 VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +RV+KN+R+C DCH A KFM+K+VGREI+VRD  RFHHF++G CSCGDYW
Sbjct: 625 IRVIKNIRVCVDCHTAIKFMAKIVGREIIVRDNSRFHHFKNGSCSCGDYW 674



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 126/491 (25%), Positives = 221/491 (45%), Gaps = 86/491 (17%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           +LA+S+HA +I  GF    +  N L+++Y K    +   +   E PQ    AR      Y
Sbjct: 93  NLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHL---SPLHEFPQ----ARHNHNNKY 145

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
           S    +   R++F++ P+  RD V +N +I   + N     A+ + ++M +++++PD+FT
Sbjct: 146 SVK--IDSVRKLFDRMPV--RDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFT 201

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
            +S+L          K   ++H   ++ G      + ++LI +Y KC             
Sbjct: 202 LSSILPIFTEHANVTKG-KEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVC----- 255

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
                F  +  RD +SW +++ G V+N   D    F                        
Sbjct: 256 ----AFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFR---------------------- 289

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
           +ML  +++  + +++SVI ACA+     LGKQ+HAY++R       +F   + ++L+ +Y
Sbjct: 290 RMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDN-KF---IASSLLDMY 345

Query: 332 WKCGKVNEARDIFN--QMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
            KCG +  AR IFN  +M +RD+VSW AI                               
Sbjct: 346 AKCGNIKMARYIFNKIEMCDRDMVSWTAI------------------------------- 374

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG-RQLHAQLVHSG 448
           I G A +G+  + + LF +M ++G KPC  AF   +T+C+  G ++ G +  ++     G
Sbjct: 375 IMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFG 434

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGNGARAIELY 507
               L    A+  +  R G +E A    + M    + S W+ ++AA   H N    IEL 
Sbjct: 435 VAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKN----IELA 490

Query: 508 EQMLKEGILPD 518
           E+++ + +L D
Sbjct: 491 EKVVNKILLVD 501


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/587 (39%), Positives = 342/587 (58%), Gaps = 14/587 (2%)

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVK-NDYLDAAREFLDGMSENVGVAWNALISGY-- 266
           + +AR VF++M  R  ++W TM++GY K    +  A E  D + E   V++N ++  Y  
Sbjct: 89  LESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLR 148

Query: 267 ---VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
              V   L         D  ++ ++IS  A +G  +    + + +        PE +   
Sbjct: 149 SYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVM--------PEKNGVS 200

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
            +A+++ Y + G +  A +++  +  + +V   A+L+ Y+  G ++ A+ +F+ M  +NL
Sbjct: 201 WSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNL 260

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
           ++W  MI+G  +N   E+GLK+F  M     +P   + +  +  C+ L AL  GRQ+H  
Sbjct: 261 VTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQL 320

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
           +  S      +A  +LI+MY +CG +++A  +F  MP  D +SWNAMI+   QHG G +A
Sbjct: 321 VSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKA 380

Query: 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563
           + L+++M    + PD ITF+ V+ ACNHAG V  G +YF++M   +GI     HY   ID
Sbjct: 381 LHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVID 440

Query: 564 LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623
           LL RAG+  EA  +I  +PFKP A I+  LL  CRIH N+DL   AA  L  L P  A  
Sbjct: 441 LLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATG 500

Query: 624 YVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAV 683
           YV L+N+YA   +WD  A+VRK+M++  V K PG SWIE+ +  H F   D  HPE  ++
Sbjct: 501 YVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSI 560

Query: 684 YKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRV 743
           +K L +L  +M+  GYVPD +F LHD+E + KE  L  HSEKLA+AFGLMK   G  +RV
Sbjct: 561 HKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRV 620

Query: 744 LKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            KNLR+CGDCH A KF+S +  REI+VRD  RFHHFR+G CSCGDYW
Sbjct: 621 FKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 117/509 (22%), Positives = 205/509 (40%), Gaps = 148/509 (29%)

Query: 19  QLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ 78
           ++ L  P N +T +L     + ++S         +N+ I  + ++  L  AR +F+++  
Sbjct: 52  RIHLVSPNN-VTPNLHVDTASDVVS---------LNKTIASFVRACDLESARNVFEKMSV 101

Query: 79  PDIVARTTLIAAYS-ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
              V   T+++ Y+  +  VK A E+F+K P    D+V YN M+  Y  +    AA+  F
Sbjct: 102 RTTVTWNTMLSGYTKVAGKVKEAHELFDKIPEP--DSVSYNIMLVCYLRSYGVEAALAFF 159

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
             M   D+                                        +  N LIS + +
Sbjct: 160 NKMPVKDI----------------------------------------ASWNTLISGFAQ 179

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG- 256
                       M  A  +F  MPE++ +SW+ M++GYV++  L+AA E    + +NVG 
Sbjct: 180 ---------NGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEE----LYKNVGM 226

Query: 257 ----------------------------------VAWNALISGYVHR-----ELK----M 273
                                             V WN++I+GYV        LK    M
Sbjct: 227 KSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTM 286

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE-AKPTPEFSLPVNNALVTLYW 332
           +  R++ +  + +SV+  C+N     LG+Q+H  + ++  +K T   +     +L+++Y 
Sbjct: 287 IESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACT-----SLISMYC 341

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           KCG ++ A  +F +MP +D++SWNA++S Y                              
Sbjct: 342 KCGDLDSAWKLFLEMPRKDVISWNAMISGY------------------------------ 371

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDS 451
            AQ+G G + L LF +MR    KP    F   I +C   G ++ G Q    +    G ++
Sbjct: 372 -AQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEA 430

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMP 480
                  +I +  R G ++ A  +   MP
Sbjct: 431 KPVHYTCVIDLLGRAGRLDEAVSLIKEMP 459



 Score = 45.4 bits (106), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 80/174 (45%), Gaps = 19/174 (10%)

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ-HGNGARA 503
           +H    S + + N  I  + R   +E+A  VF  M    +V+WN M++   +  G    A
Sbjct: 65  LHVDTASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEA 124

Query: 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED--HYARF 561
            EL++++ +    PD +++  +L     +  V+    +F  M       P +D   +   
Sbjct: 125 HELFDKIPE----PDSVSYNIMLVCYLRSYGVEAALAFFNKM-------PVKDIASWNTL 173

Query: 562 IDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
           I    + G+  +A D+   +P K     W A+++G   HG+    ++AAE+L++
Sbjct: 174 ISGFAQNGQMQKAFDLFSVMPEKNGVS-WSAMISGYVEHGD----LEAAEELYK 222


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 265/759 (34%), Positives = 409/759 (53%), Gaps = 65/759 (8%)

Query: 81  IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
           +    +L++ Y+  +++  AR++F++   +  D V +N++I+AYS N     A+ LFR+M
Sbjct: 45  VFVANSLVSMYAKCNDILGARKLFDRMNER-NDVVSWNSIISAYSLNGQCMEALGLFREM 103

Query: 141 RRDDVKPDNFTFTSVLSALALIVEE---EKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           ++  V  + +T  + L A     E+   +K  M++H  ++KS   L   V NAL++++V+
Sbjct: 104 QKAGVGANTYTLVAALQA----CEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVR 159

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE-NVG 256
                       M  A R+FDE+ E+D ++W +M+ G+ +N   + A +F  G+ + N+ 
Sbjct: 160 ---------FGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLK 210

Query: 257 VAWNALIS--------GYV--HRELKMLMLRIQLDEF-----TYTSVISACA-------- 293
               +LIS        GY+   +E+    ++  LD       T   + S C         
Sbjct: 211 PDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLV 270

Query: 294 -----NSGLFRLGKQVHAY------------LLRTEAKPTPEFSLPVNNALVTLY-WKCG 335
                N  L      + AY            L + + K     ++ + + L+     +C 
Sbjct: 271 FDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRC- 329

Query: 336 KVNEARDIFNQMPER---DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
            ++ A+++     +R   DL+  N I+  Y   G I+ A  +FE+++ ++++SWT MIS 
Sbjct: 330 -LSHAKEVHGYTLKRGLSDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISC 388

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
              NG   E L +F  M+    +P        +++ A L AL  G+++H  +   G+   
Sbjct: 389 YVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLE 448

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
            S  N+L+ MYA CG +E A  VF    +   V W  MI A G HG G  A+EL+  M  
Sbjct: 449 GSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMED 508

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
           + ++PD ITFL +L AC+H+GL+ EG+R  ETM   Y + P  +HYA  +DLL RA    
Sbjct: 509 QKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLE 568

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632
           EA   + S+  +P+A +W A L  CRIH N  LG  AA++L  L P   G+YVL+SN++A
Sbjct: 569 EAYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFA 628

Query: 633 NLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVL 692
             GRW D   VR  M+  G+KK PGCSWIEV NKVH FLV D +HPE+  +Y+ L Q+  
Sbjct: 629 ASGRWKDVEEVRMRMKGGGLKKNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQKLAQITE 688

Query: 693 EMRKL-GYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICG 751
           ++ K  GYVP TK VLH++  ++K   L  HSE+LA+A+GLM    G  +R+ KNLR+C 
Sbjct: 689 KLEKEGGYVPQTKLVLHNVGKEEKVQMLYGHSERLAIAYGLMSTSEGTPIRITKNLRVCV 748

Query: 752 DCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           DCH   K +SK   RE++VRD  RFHHF DG CSCGD+W
Sbjct: 749 DCHTFCKLVSKFFERELIVRDASRFHHFEDGVCSCGDFW 787



 Score =  156 bits (395), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 123/468 (26%), Positives = 213/468 (45%), Gaps = 78/468 (16%)

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           MR   V  D+FTF  VL A   +VE+  +  ++H  ++K G      V N+L+S+Y KC 
Sbjct: 1   MRVLGVPFDSFTFPCVLKACG-VVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKC- 58

Query: 200 SSPFVSSRSLMGAARRVFDEMPER-DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
                    ++G AR++FD M ER D +SW ++++ Y  N     A      M +  GV 
Sbjct: 59  -------NDILG-ARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREM-QKAGVG 109

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
            N                      +T  + + AC +S   +LG ++HA +L    K    
Sbjct: 110 ANT---------------------YTLVAALQACEDSSFKKLGMEIHAAIL----KSNQV 144

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
             + V NALV ++ + GK++ A  IF+++ E+D ++WN++++ +   GL +EA   F  +
Sbjct: 145 LDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGL 204

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
           ++ NL                               KP + +    + +   LG L NG+
Sbjct: 205 QDANL-------------------------------KPDEVSLISILAASGRLGYLLNGK 233

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           ++HA  + +  DS+L  GN LI MY++C  V  A  VF+ M N D +SW  +IAA  Q+ 
Sbjct: 234 EIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNN 293

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
               A++L  ++  +G+  D +   + L AC+    +   +     +HG Y +  G    
Sbjct: 294 CHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKE----VHG-YTLKRGLSDL 348

Query: 559 A---RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNI 603
                 ID+    G  + A  + +S+  K     W ++++ C +H  +
Sbjct: 349 MMQNMIIDVYADCGNINYATRMFESIKCKDVVS-WTSMIS-CYVHNGL 394



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 161/387 (41%), Gaps = 86/387 (22%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +HA+ + +       I N LID+Y K   + YA  +FD++   D+++ TT+IA    
Sbjct: 232 GKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIA---- 287

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                                        AY+ N+    A++L R ++   +  D     
Sbjct: 288 -----------------------------AYAQNNCHTEALKLLRKVQTKGMDVDTMMIG 318

Query: 154 SVLSALALIVEEEKQCM----QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           S L A + +     +C+    ++H   +K G      + N +I VY  C +  +      
Sbjct: 319 STLLACSGL-----RCLSHAKEVHGYTLKRGLSDLM-MQNMIIDVYADCGNINY------ 366

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
              A R+F+ +  +D +SWT+M++ YV N                 G+A  AL   Y+ +
Sbjct: 367 ---ATRMFESIKCKDVVSWTSMISCYVHN-----------------GLANEALGVFYLMK 406

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL--PVNNAL 327
           E       ++ D  T  S++SA A+      GK++H ++ R        F L     N+L
Sbjct: 407 ETS-----VEPDSITLVSILSAAASLSALNKGKEIHGFIFR------KGFMLEGSTVNSL 455

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL---- 383
           V +Y  CG +  A  +F     + LV W  +++AY   G    A  LF  M ++ L    
Sbjct: 456 VDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDH 515

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMR 410
           +++  ++   + +G   EG +L   M+
Sbjct: 516 ITFLALLYACSHSGLINEGKRLLETMK 542



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 7/203 (3%)

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
           MR+ G     + F   + +C  +  +  G ++H  ++  GYDS +   N+L++MYA+C  
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 469 VEAANCVFNTM-PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
           +  A  +F+ M    D VSWN++I+A   +G    A+ L+ +M K G+  +  T +  L 
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA--RFIDLLCRAGKFSEAKDVIDSLPFKP 585
           AC  +   K G      +     +    D Y     + +  R GK S A  + D L  K 
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQVL---DVYVANALVAMHVRFGKMSYAARIFDELDEKD 177

Query: 586 SAPIWEALLAGCRIHGNIDLGIQ 608
           +   W +++AG   +G  +  +Q
Sbjct: 178 NIT-WNSMIAGFTQNGLYNEALQ 199


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/542 (40%), Positives = 325/542 (59%), Gaps = 14/542 (2%)

Query: 259 WNALISG---------YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
           +NALI G           H  +K L   +  D  T+  ++ ACA      +G Q H   +
Sbjct: 85  YNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQAI 144

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLID 369
               K   E    V N+LV +Y   G +N AR +F +M   D+VSW  +++ Y   G   
Sbjct: 145 ----KHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAK 200

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
            A+ LF+ M ERNL++W+ MISG A+N   E+ ++ F  ++ EG    +    G I+SCA
Sbjct: 201 SARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCA 260

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
            LGAL  G + H  ++ +    +L  G A++ MYARCG VE A  VF  +P  D + W A
Sbjct: 261 HLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTA 320

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY 549
           +IA L  HG   +A+  + +M K+G +P  ITF  VL+AC+HAG+V+ G   FE+M   +
Sbjct: 321 LIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDH 380

Query: 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609
           G+ P  +HY   +DLL RAGK  +A+  +  +P KP+APIW ALL  CRIH N+++G + 
Sbjct: 381 GVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERV 440

Query: 610 AEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHV 669
            + L ++ P ++G YVLLSN+YA   +W D   +R++M+D+GV+K PG S IE+D KVH 
Sbjct: 441 GKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHE 500

Query: 670 FLVDDTAHPEAQAVYKYLEQLVLEMRKL-GYVPDTKFVLHDMESDQKEYALSTHSEKLAV 728
           F + D  HPE + + +  E ++L   KL GYV +T   + D++ ++KE AL  HSEKLA+
Sbjct: 501 FTIGDKTHPEIEKIERIWEDIILPKIKLAGYVGNTAETMFDIDEEEKEGALHRHSEKLAI 560

Query: 729 AFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788
           A+G+MK+     +R++KNLR+C DCH A K +SKV   E++VRD  RFHHF++G CSC D
Sbjct: 561 AYGIMKIRAPTPIRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRFHHFKEGTCSCMD 620

Query: 789 YW 790
           YW
Sbjct: 621 YW 622



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 123/466 (26%), Positives = 202/466 (43%), Gaps = 60/466 (12%)

Query: 62  KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMI 121
           + LK+++A  L   +   D+ A + LIA    S    L   +   + ++  +   YNA+I
Sbjct: 31  RDLKIIHAHMLRTHLFF-DVFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNLFIYNALI 89

Query: 122 TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGT 181
              S + N   +   +    R  + PDN T   ++ A A + E     MQ H   +K G 
Sbjct: 90  RGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQL-ENAPMGMQTHGQAIKHGF 148

Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
                V N+L+ +Y         +S   + AAR VF  M   D +SWT M+ GY +    
Sbjct: 149 EQDFYVQNSLVHMY---------ASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDA 199

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISAC 292
            +ARE  D M E   V W+ +ISGY               +    +  +E     VIS+C
Sbjct: 200 KSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSC 259

Query: 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL 352
           A+ G   +G++ H Y++R +       +L +  A+V +Y +CG V +A  +F Q+PE+D+
Sbjct: 260 AHLGALAMGEKAHEYVMRNKL----SLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDV 315

Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
           + W                               T +I+GLA +GY E+ L  FS+M  +
Sbjct: 316 LCW-------------------------------TALIAGLAMHGYAEKALWYFSEMAKK 344

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEA 471
           GF P D  F   +T+C+  G +E G ++   +    G +  L     ++ +  R G +  
Sbjct: 345 GFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRK 404

Query: 472 ANCVFNTMP-NVDSVSWNAMIAALGQHGN---GARAIELYEQMLKE 513
           A      MP   ++  W A++ A   H N   G R  ++  +M  E
Sbjct: 405 AEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQPE 450



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 156/335 (46%), Gaps = 44/335 (13%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
           + +    H   I  GF+   ++ N L+ +Y     +  AR++F  + + D+V+ T +IA 
Sbjct: 133 APMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAG 192

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
           Y    + K ARE+F++ P   R+ V ++ MI+ Y+ N+    A+E F  ++ + V  +  
Sbjct: 193 YHRCGDAKSARELFDRMP--ERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANET 250

Query: 151 TFTSVLSA---LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSR 207
               V+S+   L  +   EK     H  V+++   L   +  A++ +Y +C +       
Sbjct: 251 VMVGVISSCAHLGALAMGEKA----HEYVMRNKLSLNLILGTAVVDMYARCGN------- 299

Query: 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV 267
             +  A  VF+++PE+D L WT ++ G   + Y + A  +   M++           G+V
Sbjct: 300 --VEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKK----------GFV 347

Query: 268 HRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327
            R++            T+T+V++AC+++G+   G ++   + R       E  L     +
Sbjct: 348 PRDI------------TFTAVLTACSHAGMVERGLEIFESMKRDHG---VEPRLEHYGCM 392

Query: 328 VTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
           V L  + GK+ +A     +MP + +   W A+L A
Sbjct: 393 VDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGA 427



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 105/270 (38%), Gaps = 35/270 (12%)

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
           +  L+  A  +   ++  NL  +  +I G + +   E     + +    G  P +     
Sbjct: 63  TTNLLHYAIRVASQIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPF 122

Query: 424 AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
            + +CA L     G Q H Q +  G++      N+L+ MYA  G + AA  VF  M   D
Sbjct: 123 LVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFD 182

Query: 484 SVSWNAMIAALGQHGNGA-------------------------------RAIELYEQMLK 512
            VSW  MIA   + G+                                 +A+E +E +  
Sbjct: 183 VVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQA 242

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFE-TMHGPYGIPPGEDHYARFIDLLCRAGKF 571
           EG++ +    + V+S+C H G +  G +  E  M     +          +D+  R G  
Sbjct: 243 EGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILG--TAVVDMYARCGNV 300

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
            +A  V + LP K     W AL+AG  +HG
Sbjct: 301 EKAVMVFEQLPEK-DVLCWTALIAGLAMHG 329


>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 256/767 (33%), Positives = 404/767 (52%), Gaps = 72/767 (9%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           Q D+     LI  Y     +  A ++F++TPL+  +   +N ++ A   +     A+EL 
Sbjct: 163 QVDVHLSCALINLYEKCLGIDRANQVFDETPLQ--EDFLWNTIVMANLRSERWEDALELS 220

Query: 138 RDMRRDDVKPDNFTFTSVLSALALI--VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           R M+    K  + T   +L A   +  + E KQ   +H  V++ G    TS+ N+++S+Y
Sbjct: 221 RRMQSASAKATDGTIVKLLQACGKLRALNEGKQ---IHGYVIRFGRVSNTSICNSIVSMY 277

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM-SEN 254
                    S  + +  AR VFD   + +  SW ++++ Y  N  L+ A +    M S +
Sbjct: 278 ---------SRNNRLELARAVFDSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSS 328

Query: 255 VG---VAWNALISGYVHR---ELKMLMLR------IQLDEFTYTSVISACANSGLFRLGK 302
           +    + WN+L+SG++ +   E  +  +R       + D  + TS + A    G F LGK
Sbjct: 329 IKPDIITWNSLLSGHLLQGSYENVLTNIRSLQSAGFKPDSCSITSALQAVIELGYFNLGK 388

Query: 303 QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY 362
           ++H Y++R++     E+ + V  +LV +Y K   + +A  +F+    +++ +WN+++S Y
Sbjct: 389 EIHGYIMRSKL----EYDVYVCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWNSLISGY 444

Query: 363 VSAGLIDEAKSLFEAMRER---------------------------------------NL 383
              GL D A+ L   M+E                                        N+
Sbjct: 445 TYKGLFDNAEKLLIQMKEEGIKADLVTWNSLVSGYSMSGCSEEALAVINRIKSLGLTPNV 504

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
           +SWT MISG  QN    + L+ FSQM+ E  KP     +  + +CAG   L+ G ++H  
Sbjct: 505 VSWTAMISGCCQNENYTDALQFFSQMQEENVKPNSTTISTLLRACAGPSLLKKGEEIHCF 564

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
            +  G+   +    ALI MY++ G ++ A+ VF  +       WN M+     +G+G   
Sbjct: 565 SMKHGFVDDIYIATALIDMYSKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEV 624

Query: 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563
             L++ M K GI PD ITF  +LS C ++GLV +G +YF++M   Y I P  +HY+  +D
Sbjct: 625 FTLFDNMCKTGIRPDAITFTALLSGCKNSGLVMDGWKYFDSMKTDYSINPTIEHYSCMVD 684

Query: 564 LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623
           LL +AG   EA D I ++P K  A IW A+LA CR+H +I +   AA  LF+L P+++  
Sbjct: 685 LLGKAGFLDEALDFIHAMPQKADASIWGAVLAACRLHKDIKIAEIAARNLFRLEPYNSAN 744

Query: 624 YVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAV 683
           YVL+ N+Y+   RW D  R+++ M   GVK     SWI+V   +HVF  +  +HPE   +
Sbjct: 745 YVLMMNIYSTFERWGDVERLKESMTAMGVKIPNVWSWIQVRQTIHVFSTEGKSHPEEGEI 804

Query: 684 YKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRV 743
           Y  L QL+ E++KLGYVPDT  V  +++  +KE  L +H+EKLA+ +GLMK+ GG  +RV
Sbjct: 805 YFDLYQLISEIKKLGYVPDTNCVHQNIDDSEKEKVLLSHTEKLAMTYGLMKIKGGTPIRV 864

Query: 744 LKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +KN RIC DCH A K++S    REI +RDG RFHHF +G+CSC D W
Sbjct: 865 VKNTRICQDCHTAAKYISLARNREIFLRDGGRFHHFMNGECSCNDRW 911



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/494 (22%), Positives = 220/494 (44%), Gaps = 45/494 (9%)

Query: 112 RDTVFYNAMITAY-SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM 170
           R+ + +N+ +  + S   + H  +E+F+++    VK D+   T VL  + L + E    M
Sbjct: 93  RNYLLWNSFLEEFASFGGDSHEILEVFKELHDKGVKFDSKALTVVLK-ICLALMELWLGM 151

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           ++H  ++K G  +   +  ALI++Y KC+          +  A +VFDE P +++  W T
Sbjct: 152 EVHACLLKRGFQVDVHLSCALINLYEKCLG---------IDRANQVFDETPLQEDFLWNT 202

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++   ++++  + A E    M      A +                       T   ++ 
Sbjct: 203 IVMANLRSERWEDALELSRRMQSASAKATDG----------------------TIVKLLQ 240

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           AC        GKQ+H Y++R            + N++V++Y +  ++  AR +F+   + 
Sbjct: 241 ACGKLRALNEGKQIHGYVIRFGRVSNT----SICNSIVSMYSRNNRLELARAVFDSTEDH 296

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRER----NLLSWTVMISGLAQNGYGEEGLKLF 406
           +L SWN+I+S+Y   G ++ A  LF  M       ++++W  ++SG    G  E  L   
Sbjct: 297 NLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYENVLTNI 356

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
             ++  GFKP   +   A+ +   LG    G+++H  ++ S  +  +    +L+ MY + 
Sbjct: 357 RSLQSAGFKPDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIKN 416

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
             +E A  VF+   N +  +WN++I+     G    A +L  QM +EGI  D +T+ +++
Sbjct: 417 DCLEKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKEEGIKADLVTWNSLV 476

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP---F 583
           S  + +G  +E       +    G+ P    +   I   C+   +++A      +     
Sbjct: 477 SGYSMSGCSEEALAVINRIKS-LGLTPNVVSWTAMISGCCQNENYTDALQFFSQMQEENV 535

Query: 584 KPSAPIWEALLAGC 597
           KP++     LL  C
Sbjct: 536 KPNSTTISTLLRAC 549



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/440 (20%), Positives = 202/440 (45%), Gaps = 56/440 (12%)

Query: 20  LQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQP 79
           LQ C     +     + +H ++I  G      I N ++ +Y ++ +L  AR +FD     
Sbjct: 239 LQACGKLRALNE--GKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTEDH 296

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNK---TPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
           ++ +  ++I++Y+ +  +  A ++F +   + +K  D + +N++++ +    +    +  
Sbjct: 297 NLASWNSIISSYAVNGCLNGAWDLFREMESSSIK-PDIITWNSLLSGHLLQGSYENVLTN 355

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
            R ++    KPD+ + TS L A+ + +       ++H  +++S       V  +L+ +Y+
Sbjct: 356 IRSLQSAGFKPDSCSITSALQAV-IELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYI 414

Query: 197 K-------------------CVSSPFVSS---RSLMGAARRVFDEMPER----DELSWTT 230
           K                   C  +  +S    + L   A ++  +M E     D ++W +
Sbjct: 415 KNDCLEKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKEEGIKADLVTWNS 474

Query: 231 MMTGYVKNDYLDAAREFLD-----GMSENVGVAWNALISGYVHRE---------LKMLML 276
           +++GY  +   + A   ++     G++ NV V+W A+ISG    E          +M   
Sbjct: 475 LVSGYSMSGCSEEALAVINRIKSLGLTPNV-VSWTAMISGCCQNENYTDALQFFSQMQEE 533

Query: 277 RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
            ++ +  T ++++ ACA   L + G+++H + ++          + +  AL+ +Y K GK
Sbjct: 534 NVKPNSTTISTLLRACAGPSLLKKGEEIHCFSMKHGFVD----DIYIATALIDMYSKGGK 589

Query: 337 VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL----LSWTVMISG 392
           +  A ++F  + E+ L  WN ++  Y   G  +E  +LF+ M +  +    +++T ++SG
Sbjct: 590 LKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDNMCKTGIRPDAITFTALLSG 649

Query: 393 LAQNGYGEEGLKLFSQMRLE 412
              +G   +G K F  M+ +
Sbjct: 650 CKNSGLVMDGWKYFDSMKTD 669



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 135/317 (42%), Gaps = 18/317 (5%)

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM---PER-DLVSWN-AILSAYVS 364
            T+   +P+FS P  +           +N  R++  QM   P++ +LV+ + +++  Y+ 
Sbjct: 17  ETQIVSSPQFSSPKFSPFFHPLGGIRTLNSVRELHAQMIKMPKKGNLVTMDGSMMRNYLE 76

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQ-NGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
            G  + A  +F     RN L W   +   A   G   E L++F ++  +G K    A   
Sbjct: 77  FGDFESATKVFFVGFARNYLLWNSFLEEFASFGGDSHEILEVFKELHDKGVKFDSKALTV 136

Query: 424 AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
            +  C  L  L  G ++HA L+  G+   +    ALI +Y +C  ++ AN VF+  P  +
Sbjct: 137 VLKICLALMELWLGMEVHACLLKRGFQVDVHLSCALINLYEKCLGIDRANQVFDETPLQE 196

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFE 543
              WN ++ A  +      A+EL  +M          T + +L AC     + EG++   
Sbjct: 197 DFLWNTIVMANLRSERWEDALELSRRMQSASAKATDGTIVKLLQACGKLRALNEGKQ--- 253

Query: 544 TMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
            +HG    +G           + +  R  +   A+ V DS      A  W ++++   ++
Sbjct: 254 -IHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTEDHNLAS-WNSIISSYAVN 311

Query: 601 GNIDLGIQAAEQLFQLM 617
           G ++     A  LF+ M
Sbjct: 312 GCLN----GAWDLFREM 324


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 258/720 (35%), Positives = 384/720 (53%), Gaps = 32/720 (4%)

Query: 86  TLIAAYSASDNVKL--AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD 143
           +L +  S SD + L  A  +F++ P      +F  A+   +  +S     I L+R M   
Sbjct: 40  SLTSCISPSDPLHLRYALSLFDRMPCST--FLFDTALRACFRASSGPDRPIILYRRMHGV 97

Query: 144 DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
           DV PD FTF  +            +C       V  G  L  +    L+   V  ++SP 
Sbjct: 98  DVPPDAFTFHFLF-----------KCCARGGAHVLLGRMLHAACFRTLLPSAVPLIASPI 146

Query: 204 V---SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWN 260
           +   +   L G ARR FDE   +D ++WTT+++G  K   LD AR  L        V W 
Sbjct: 147 IHMYAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMGLLDDARRLLARAPVRNVVTWT 206

Query: 261 ALISGY---------VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
            LISGY         V     ML   I  DE T   ++SAC        G  +H  +L  
Sbjct: 207 GLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGCSLH--MLVG 264

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE-RDLVSWNAILSAYVSAGLIDE 370
           + +      L V  AL+ +Y KCG    AR++F+ +   R    WNA++  Y   G +D 
Sbjct: 265 DKRMLMSDKLVV--ALIDMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDI 322

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
           A+SLF+ M + +++++  +I+G    G   E L LF++MR  G    ++   G +T+ A 
Sbjct: 323 ARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTASAS 382

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
           LGAL  GR LHA +     +  +  G AL+ MY +CG VE A   F  M   D  +W+AM
Sbjct: 383 LGALPQGRALHACIEQRLVERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAM 442

Query: 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
           I  L  +G G  A+E +  M  +G   + +T++ VL+AC+H+ L+ EGR YF+ M   + 
Sbjct: 443 IGGLAFNGMGKAALEHFFWMKCDGFHANSVTYIAVLTACSHSCLLDEGRLYFDEMRLLHN 502

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
           I P  +HY   IDLL R+G   EA D++ ++P +P+A IW ++L+ CR+H N+DL   AA
Sbjct: 503 IRPQIEHYGCMIDLLGRSGLLDEAMDLVQTMPMQPNAVIWASILSACRVHKNVDLAQNAA 562

Query: 611 EQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVF 670
             L +L P     YV + N+Y +  +W+DA+++R+LM  RGVKK  G S I V  +VH F
Sbjct: 563 HHLLKLEPAEDAVYVQMYNIYIDSRQWEDASKIRRLMEKRGVKKTAGYSSIAVAGQVHKF 622

Query: 671 LVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAF 730
           +V D +HP+   +   +E++   ++  GY P T  +  D++ ++KE AL  HSEKLA+AF
Sbjct: 623 IVGDRSHPQIAEIVVMMEEIGRRLKSAGYSPITSQITVDVDEEEKEQALLAHSEKLAIAF 682

Query: 731 GLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           GL+ L     V ++KNLR+C DCH+A K +S++  REI+VRD  RFHHFR G CSC D+W
Sbjct: 683 GLVSLAPNLPVHIIKNLRVCEDCHSAIKLISRLWNREIIVRDRSRFHHFRGGVCSCNDFW 742



 Score =  162 bits (409), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 125/457 (27%), Positives = 206/457 (45%), Gaps = 61/457 (13%)

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           AR  FDE    D+VA TT+I+  +    +  AR +  + P+  R+ V +  +I+ YS   
Sbjct: 159 ARRAFDEASVKDVVAWTTVISGLAKMGLLDDARRLLARAPV--RNVVTWTGLISGYSRAG 216

Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL 188
               A++ F  M  D + PD  T   +LSA   + +    C  +H  V      +   ++
Sbjct: 217 RAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGC-SLHMLVGDKRMLMSDKLV 275

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE-RDELSWTTMMTGYVKNDYLDAAREF 247
            ALI +Y KC  +         G AR VFD +   R    W  M+ GY K  ++D AR  
Sbjct: 276 VALIDMYAKCGDT---------GRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSL 326

Query: 248 LDGMSENVGVAWNALISGYVH----RELKMLMLRIQ-----LDEFTYTSVISACANSGLF 298
            D M ++  + +N+LI+GY+H    RE  +L  +++      D FT   +++A A+ G  
Sbjct: 327 FDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTASASLGAL 386

Query: 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAI 358
             G+ +HA +     +   E  + +  AL+ +Y KCG+V EA   F QM  RD+ +W+A 
Sbjct: 387 PQGRALHACI----EQRLVERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSA- 441

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
                                         MI GLA NG G+  L+ F  M+ +GF    
Sbjct: 442 ------------------------------MIGGLAFNGMGKAALEHFFWMKCDGFHANS 471

Query: 419 YAFAGAITSCAGLGALENGRQL--HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
             +   +T+C+    L+ GR      +L+H+     +     +I +  R G+++ A  + 
Sbjct: 472 VTYIAVLTACSHSCLLDEGRLYFDEMRLLHN-IRPQIEHYGCMIDLLGRSGLLDEAMDLV 530

Query: 477 NTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
            TMP   ++V W ++++A   H N   A      +LK
Sbjct: 531 QTMPMQPNAVIWASILSACRVHKNVDLAQNAAHHLLK 567


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 255/784 (32%), Positives = 398/784 (50%), Gaps = 135/784 (17%)

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
           Y+   ++K A  +F++  +K+   +F+N ++   + + +   +I LF+ M    V+ D++
Sbjct: 139 YTNCGDLKEASRVFDE--VKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSY 196

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           TF+                                            CVS  F S RS+ 
Sbjct: 197 TFS--------------------------------------------CVSKSFSSLRSVH 212

Query: 211 GAARR----VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
           G  +     +     ER+ +   +++  Y+KN  +D+AR+  D M+E   ++WN++I+GY
Sbjct: 213 GGEQLHGFILKSGFGERNSVG-NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 271

Query: 267 VHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
           V   L         +ML+  I++D  T  SV + CA+S L  LG+ VH+  ++       
Sbjct: 272 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 331

Query: 318 EFSLPVNNALVTLYWKC-------------------------------GKVNEARDIFNQ 346
            F     N L+ +Y KC                               G   EA  +F +
Sbjct: 332 RFC----NTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEE 387

Query: 347 MPER---------------------------------------DLVSWNAILSAYVSAGL 367
           M E                                        D+   NA++  Y   G 
Sbjct: 388 MEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGS 447

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG-FKPCDYAFAGAIT 426
           + EA+ +F  MR ++++SW  +I G ++N Y  E L LF+ +  E  F P +   A  + 
Sbjct: 448 MQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLP 507

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
           +CA L A + GR++H  ++ +GY S     N+L+ MYA+CG +  A+ +F+ + + D VS
Sbjct: 508 ACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVS 567

Query: 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546
           W  MIA  G HG G  AI L+ QM + GI  D I+F+++L AC+H+GLV EG R+F  M 
Sbjct: 568 WTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMR 627

Query: 547 GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLG 606
               I P  +HYA  +D+L R G   +A   I+++P  P A IW ALL GCRIH ++ L 
Sbjct: 628 HECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLA 687

Query: 607 IQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNK 666
            + AE++F+L P + G YVL++N+YA   +W+   R+RK +  RG++K PGCSWIE+  +
Sbjct: 688 EKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGR 747

Query: 667 VHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKL 726
           V++F+  D+++PE + +  +L ++   M + GY P TK+ L D E  +KE AL  HSEKL
Sbjct: 748 VNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKL 807

Query: 727 AVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSC 786
           A+A G++    G  +RV KNLR+CGDCH   KFMSK+  REIV+RD  RFH F+DG CSC
Sbjct: 808 AMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSC 867

Query: 787 GDYW 790
             +W
Sbjct: 868 RGFW 871



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 173/388 (44%), Gaps = 78/388 (20%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           SL R+VH+  + + F   +   N L+D+Y K   L  A+ +F E+               
Sbjct: 313 SLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSD------------- 359

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                               R  V Y +MI  Y+       A++LF +M  + + PD +T
Sbjct: 360 --------------------RSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYT 399

Query: 152 FTSVLSALA--LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
            T+VL+  A   +++E K   ++H  + ++  G    V NAL+ +Y KC S         
Sbjct: 400 VTAVLNCCARYRLLDEGK---RVHEWIKENDLGFDIFVSNALMDMYAKCGS--------- 447

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           M  A  VF EM  +D +SW T++ GY KN Y + A    + + E                
Sbjct: 448 MQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEK-------------- 493

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS-LPVNNALV 328
                  R   DE T   V+ ACA+   F  G+++H Y++R        FS   V N+LV
Sbjct: 494 -------RFSPDERTVACVLPACASLSAFDKGREIHGYIMR-----NGYFSDRHVANSLV 541

Query: 329 TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR----ERNLL 384
            +Y KCG +  A  +F+ +  +DLVSW  +++ Y   G   EA +LF  MR    E + +
Sbjct: 542 DMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEI 601

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLE 412
           S+  ++   + +G  +EG + F+ MR E
Sbjct: 602 SFVSLLYACSHSGLVDEGWRFFNIMRHE 629



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 16/145 (11%)

Query: 28  PITSSLA-----RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIV 82
           P  +SL+     R +H +++ +G+    H+ N L+D+Y K   L+ A  LFD+I   D+V
Sbjct: 507 PACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLV 566

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMR------DTVFYNAMITAYSHNSNGHAAIEL 136
           + T +IA Y      K A  +FN    +MR      D + + +++ A SH+         
Sbjct: 567 SWTVMIAGYGMHGFGKEAIALFN----QMRQAGIEADEISFVSLLYACSHSGLVDEGWRF 622

Query: 137 FRDMRRD-DVKPDNFTFTSVLSALA 160
           F  MR +  ++P    +  ++  LA
Sbjct: 623 FNIMRHECKIEPTVEHYACIVDMLA 647



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 4/120 (3%)

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
           CA   +L++G+++   +  +G+    + G+ L  MY  CG ++ A+ VF+ +    ++ W
Sbjct: 104 CADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFW 163

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
           N ++  L + G+ + +I L+++M+  G+  D  TF  V  + +    V  G    E +HG
Sbjct: 164 NILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGG----EQLHG 219


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/553 (40%), Positives = 329/553 (59%), Gaps = 18/553 (3%)

Query: 248 LDGMSENVGVA-WNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGL 297
           L G ++N  V  W A+I G+  R L         +ML   ++ + FT++S++  C     
Sbjct: 31  LFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP---- 86

Query: 298 FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA 357
              GK +H+       K   +  L V   L+ +Y + G V  A+ +F+ MPE+ LVS  A
Sbjct: 87  IEPGKALHS----QAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTA 142

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
           +L+ Y   G +D A+ LF+ M ER+ + W VMI G  QNG   E L LF +M     KP 
Sbjct: 143 MLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPN 202

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
           +      +++C  LGALE+GR +H+ + ++G   ++  G AL+ MY++CG +E A  VF+
Sbjct: 203 EVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFD 262

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKE 537
            + + D V+WN+MI      G    A++L++ M + G+ P  ITF+ +LSAC H+G V E
Sbjct: 263 KIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTE 322

Query: 538 GRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
           G   F  M   YGI P  +HY   ++LL RAG   +A +++ ++  +P   +W  LL  C
Sbjct: 323 GWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGAC 382

Query: 598 RIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPG 657
           R+HG I LG +  E L      ++GTY+LLSN+YA +G WD  AR+R +M+D GVKKEPG
Sbjct: 383 RLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPG 442

Query: 658 CSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEY 717
           CS IEV+NKVH FL     HP+ + +Y  LE++   ++  GY P T  VLHD+   +KE 
Sbjct: 443 CSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKER 502

Query: 718 ALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFH 777
           +L  HSEKLA+AFGL+    G T++++KNLR+C DCH   K +SK+ GR+IVVRD  RFH
Sbjct: 503 SLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFH 562

Query: 778 HFRDGKCSCGDYW 790
           HF +G CSCGDYW
Sbjct: 563 HFVNGSCSCGDYW 575



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 120/453 (26%), Positives = 201/453 (44%), Gaps = 63/453 (13%)

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
           D+ P P  V    L  +Y++   +  +  +F +T  +     F+ A+I  ++       A
Sbjct: 3   DKKP-PAXVPLDKLQRSYASLGRLDYSVALFGRT--QNPSVFFWTAIIHGHALRGLHEQA 59

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
           +  +  M    V+P+ FTF+S+L      +E  K    +H   VK G      V   L+ 
Sbjct: 60  LNFYAQMLTQGVEPNAFTFSSILKLCP--IEPGKA---LHSQAVKLGFDSDLYVRTGLLD 114

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
           VY +      VS       A+++FD MPE+  +S T M+T Y K+  LDAAR   DGM E
Sbjct: 115 VYAR--GGDVVS-------AQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEE 165

Query: 254 NVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304
             GV WN +I GY    +         +ML  + + +E T  SV+SAC   G    G+ V
Sbjct: 166 RDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWV 225

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVS 364
           H+Y+         +F++ V  ALV +Y KCG + +AR +F+++ ++D+V+WN+++  Y  
Sbjct: 226 HSYIENNGI----QFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAM 281

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
            G                               + +E L+LF  M   G  P +  F G 
Sbjct: 282 XG-------------------------------FSQEALQLFKSMCRMGLHPTNITFIGI 310

Query: 425 ITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAA-NCVFNTMPNV 482
           +++C   G +  G  +  ++    G +  +     ++ +  R G VE A   V N     
Sbjct: 311 LSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEP 370

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGI 515
           D V W  ++ A   HG  A   ++ E ++ + +
Sbjct: 371 DPVLWGTLLGACRLHGKIALGEKIVELLVDQNL 403



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 165/369 (44%), Gaps = 44/369 (11%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           ++S L+LC P  P      +++H+  +  GF    ++   L+D+Y +   +V A+ LFD 
Sbjct: 78  FSSILKLC-PIEP-----GKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDT 131

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P+  +V+ T ++  Y+    +  AR +F+   ++ RD V +N MI  Y+ N   + A+ 
Sbjct: 132 MPEKSLVSLTAMLTCYAKHGELDAARVLFDG--MEERDGVCWNVMIDGYTQNGMPNEALV 189

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LFR M +   KP+  T  SVLSA   +   E     +H  +  +G      V  AL+ +Y
Sbjct: 190 LFRRMLKAKAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQFNVHVGTALVDMY 248

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            KC S         +  AR VFD++ ++D ++W +M+ GY    +   A +    M    
Sbjct: 249 SKCGS---------LEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCR-- 297

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                               + +     T+  ++SAC +SG    G  +    ++ E   
Sbjct: 298 --------------------MGLHPTNITFIGILSACGHSGWVTEGWDIFNK-MKDEYGI 336

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSL 374
            P+  +     +V L  + G V +A ++   M  E D V W  +L A    G I   + +
Sbjct: 337 EPK--IEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKI 394

Query: 375 FEAMRERNL 383
            E + ++NL
Sbjct: 395 VELLVDQNL 403



 Score =  116 bits (290), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 133/299 (44%), Gaps = 47/299 (15%)

Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
           V  + +  +Y S G +D + +LF   +  ++  WT +I G A  G  E+ L  ++QM  +
Sbjct: 10  VPLDKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQ 69

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
           G +P  + F+  +  C     +E G+ LH+Q V  G+DS L     L+ +YAR G V +A
Sbjct: 70  GVEPNAFTFSSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSA 125

Query: 473 NCVFNTMPNV-------------------------------DSVSWNAMIAALGQHGNGA 501
             +F+TMP                                 D V WN MI    Q+G   
Sbjct: 126 QQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPN 185

Query: 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR---RYFETMHGPYGIPPGEDHY 558
            A+ L+ +MLK    P+ +T L+VLSAC   G ++ GR    Y E     + +  G    
Sbjct: 186 EALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVG---- 241

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
              +D+  + G   +A+ V D +  K     W +++ G  + G      Q A QLF+ M
Sbjct: 242 TALVDMYSKCGSLEDARLVFDKIDDKDVVA-WNSMIVGYAMXGF----SQEALQLFKSM 295


>gi|357128440|ref|XP_003565881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Brachypodium distachyon]
          Length = 682

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 263/711 (36%), Positives = 380/711 (53%), Gaps = 72/711 (10%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D++    LIA Y     + LAR+MF+  P   R+ V  N +++ Y+       A+ L   
Sbjct: 44  DVIQHNHLIAFYGKCGRLGLARQMFDAMP--SRNAVSGNLLMSGYASAGRHSDALAL--- 98

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           ++  D   + +  ++ LSA A  V       Q H   VKSG      V NA++ +Y +C 
Sbjct: 99  LKAADFSLNEYVLSTALSAAAH-VRSYGMGRQCHGYAVKSGLQEHPYVCNAVLHMYCQCA 157

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                     +  A +VF+ +   D  ++ +M+ G++     D +   +  M   V    
Sbjct: 158 H---------VEDAVKVFENVSGFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGEVE--- 205

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                              Q D  +Y +V+  CA++    LG QVHA  L    K   E 
Sbjct: 206 -------------------QWDHVSYVAVLGHCASTKELLLGCQVHAQAL----KRRLEQ 242

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
           ++ V +ALV +Y KC   + ARD                            A S FE + 
Sbjct: 243 NVYVGSALVDMYGKC---DCARD----------------------------AHSAFEVLP 271

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
           E+N++SWT +++   QN   E+ L+LF  + +EG +P ++ +A A+ SCAGL AL+NG  
Sbjct: 272 EKNVVSWTAVMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAALKNGNA 331

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           L A  + +G+  +LS  NAL+ MY++ G +  A  VF +MP  D VSWN++I     HG 
Sbjct: 332 LSASAMKTGHWGALSVCNALMNMYSKSGSIHDAWRVFLSMPWRDVVSWNSVIIGYAHHGL 391

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA 559
              A+ ++  ML   I+P  +TF+ VL AC   GLV EG  Y   M    GI PG +HY 
Sbjct: 392 AREAMCVFHDMLLAEIVPSYVTFVGVLLACAQLGLVDEGLYYLNIMMKEMGIKPGREHYT 451

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
             + LLCRAG+  EA+  I S         W++LL+ C+++ N  LG + AEQ+ QL P+
Sbjct: 452 CMVGLLCRAGRLDEAEQFILSNCIGTDVVAWKSLLSSCQVYKNYGLGHRVAEQILQLKPN 511

Query: 620 HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPE 679
             GTYVLLSNMYA   RWD   +VRKLMR+RGV+KEPG SWI+V ++VHVF  +D  H  
Sbjct: 512 DVGTYVLLSNMYAKANRWDGVVKVRKLMRERGVRKEPGVSWIQVGSEVHVFTSEDKNHKW 571

Query: 680 AQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGA 739
              +   L++L+ +++ +GYVP+   VLHD+E++QKE  L  HSEK+A+AFGL+  P G 
Sbjct: 572 INQITIKLKELIGQIKVIGYVPNCAVVLHDVEAEQKEEHLMYHSEKMALAFGLIHSPEGE 631

Query: 740 TVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           T+R++KNLRIC DCH A K +S V  R+IVVRD  RFH   DG CSC DYW
Sbjct: 632 TIRIMKNLRICDDCHVAIKLISVVTRRKIVVRDTVRFHCIDDGVCSCDDYW 682



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 39/229 (17%)

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           GK +HA ++R        F +  +N L+  Y KCG++  AR +F+ MP R+ VS N ++S
Sbjct: 30  GKAIHAQMIRA-----AHFDVIQHNHLIAFYGKCGRLGLARQMFDAMPSRNAVSGNLLMS 84

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
            Y SAG   +A +L +A                                    F   +Y 
Sbjct: 85  GYASAGRHSDALALLKA----------------------------------ADFSLNEYV 110

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
            + A+++ A + +   GRQ H   V SG        NA++ MY +C  VE A  VF  + 
Sbjct: 111 LSTALSAAAHVRSYGMGRQCHGYAVKSGLQEHPYVCNAVLHMYCQCAHVEDAVKVFENVS 170

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
             D  ++N+MI      G    +I +   M+ E    D ++++ VL  C
Sbjct: 171 GFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGEVEQWDHVSYVAVLGHC 219


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 274/807 (33%), Positives = 414/807 (51%), Gaps = 96/807 (11%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           S  RS+HA ++ SG + +  + N L+ IY     +  A  LF+ +               
Sbjct: 145 SQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERME-------------- 190

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                               RD V +NA I A + + +   A+ELF+ M+ + V+P   T
Sbjct: 191 --------------------RDLVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPARIT 230

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
               LS  A I    +Q   +H  V +SG      V  AL S Y +            + 
Sbjct: 231 LVITLSVCAKI----RQARAIHSIVRESGLEQTLVVSTALASAYARL---------GHLD 277

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYL-DAAREFLDGMSENVG-------------- 256
            A+ VFD   ERD +SW  M+  Y ++ ++ +AA  F   + E +               
Sbjct: 278 QAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGCS 337

Query: 257 ---------------------VAWNALISGYVH----RELKMLMLRIQLDEFTYTSVISA 291
                                V  NAL+  Y       E + L   I  +  ++ ++I+ 
Sbjct: 338 SLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIPGNAVSWNTMIAG 397

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
            +  G  +   ++   +      P     L +  A+ +   +   + E R + +++    
Sbjct: 398 SSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCG 457

Query: 352 LVSWNAILSA----YVSAGLIDEAKSLFE--AMRER-NLLSWTVMISGLAQNGYGEEGLK 404
             S  AI +A    Y S G IDEA + F+  AM +R +++SW  +IS L+Q+G+G+  L 
Sbjct: 458 YASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALG 517

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
            F +M L G  P        + +CAG  AL  G  +H  L HSG +S++    AL +MY 
Sbjct: 518 FFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMESNVFVATALASMYG 577

Query: 465 RCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
           RCG +E+A  +F  +    D V +NAMIAA  Q+G    A++L+ +M +EG  PD  +F+
Sbjct: 578 RCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFV 637

Query: 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF 583
           +VLSAC+H GL  EG   F +M   YGI P EDHYA  +D+L RAG  ++A+++I  +  
Sbjct: 638 SVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDV 697

Query: 584 KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARV 643
           KP+  +W+ LL  CR + ++D G  A   + +L P     YV+LSN+ A  G+WD+AA V
Sbjct: 698 KPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEV 757

Query: 644 RKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDT 703
           R  M  RG++K+ G SWIE+ ++VH F+  D +HP ++ +Y+ LE+L  E+R++GYVPDT
Sbjct: 758 RTEMESRGLRKQAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDT 817

Query: 704 KFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKV 763
           + VL  ++  +KE  L  HSE+LA+A G+M      TVRV+KNLR+C DCHNA KF+SK+
Sbjct: 818 RLVLRKVDEAEKERLLCQHSERLAIALGVMS-SSTDTVRVMKNLRVCEDCHNATKFISKI 876

Query: 764 VGREIVVRDGKRFHHFRDGKCSCGDYW 790
           V +EIVVRD  RFHHF DG CSCGDYW
Sbjct: 877 VNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 142/515 (27%), Positives = 229/515 (44%), Gaps = 118/515 (22%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIY--CKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           S  R +HA ++S G +  E + N L+ +Y  C+SL  V                      
Sbjct: 46  SQGRRIHARIVSLGLE--EELGNHLLRLYLKCESLGDV---------------------- 81

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
                       E+F++  L++RD   +  +ITAY+ +     AI +F  M+++ V+ D 
Sbjct: 82  -----------EEVFSR--LEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDA 128

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
            TF +VL A A +  +  Q   +H  +V+SG    + + N L+ +Y  C           
Sbjct: 129 VTFLAVLKACARL-GDLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSC---------GC 178

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           + +A  +F+ M ERD +SW   +    ++  LD A E                       
Sbjct: 179 VASAMLLFERM-ERDLVSWNAAIAANAQSGDLDMALELFQ-------------------- 217

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
             +M +  ++    T    +S CA     R  + +H+ +  +  + T    L V+ AL +
Sbjct: 218 --RMQLEGVRPARITLVITLSVCAK---IRQARAIHSIVRESGLEQT----LVVSTALAS 268

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
            Y + G +++A+++F++  ERD+VSWNA+L AY                           
Sbjct: 269 AYARLGHLDQAKEVFDRAAERDVVSWNAMLGAY--------------------------- 301

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
               AQ+G+  E   LF++M  EG  P       A T C+   +L  GR +HA  +  G 
Sbjct: 302 ----AQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGCS---SLRFGRMIHACALEKGL 354

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
           D  +  GNAL+ MY RCG  E A  +F  +P  ++VSWN MIA   Q G   RA+EL+++
Sbjct: 355 DRDIVLGNALLDMYTRCGSPEEARHLFEGIPG-NAVSWNTMIAGSSQKGQMKRALELFQR 413

Query: 510 MLKEGILPDRITFLTVLSAC----NHAGLVKEGRR 540
           M  EG+ P R T+L +L A       A  + EGR+
Sbjct: 414 MQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRK 448



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 144/332 (43%), Gaps = 47/332 (14%)

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           ++ A  +  L   G+++HA ++      +      + N L+ LY KC  + +  ++F+++
Sbjct: 35  LLRAAGDDRLLSQGRRIHARIV------SLGLEEELGNHLLRLYLKCESLGDVEEVFSRL 88

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
             RD                        EA       SWT +I+   ++G  +  + +F 
Sbjct: 89  EVRD------------------------EA-------SWTTIITAYTEHGQAKRAIWMFH 117

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467
           +M+ EG +     F   + +CA LG L  GR +HA +V SG +      N L+ +Y  CG
Sbjct: 118 RMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCG 177

Query: 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
            V +A  +F  M   D VSWNA IAA  Q G+   A+EL+++M  EG+ P RIT +  LS
Sbjct: 178 CVASAMLLFERMER-DLVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLS 236

Query: 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSA 587
            C     +++ R     +    G+               R G   +AK+V D    +   
Sbjct: 237 VCAK---IRQARAIHSIVR-ESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVV 292

Query: 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
             W A+L     HG++      A  LF  M H
Sbjct: 293 S-WNAMLGAYAQHGHMS----EAALLFARMLH 319



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 13/144 (9%)

Query: 27  NPITSSLARSVHA--------HMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP- 77
           N I SSL++  H          M   G  P +     ++D    +  L     + D +  
Sbjct: 500 NAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRH 559

Query: 78  ---QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAI 134
              + ++   T L + Y    +++ ARE+F K  ++ RD V +NAMI AYS N     A+
Sbjct: 560 SGMESNVFVATALASMYGRCGSLESAREIFEKVAVE-RDVVIFNAMIAAYSQNGLAGEAL 618

Query: 135 ELFRDMRRDDVKPDNFTFTSVLSA 158
           +LF  M+++  +PD  +F SVLSA
Sbjct: 619 KLFWRMQQEGSRPDEQSFVSVLSA 642


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 270/765 (35%), Positives = 412/765 (53%), Gaps = 78/765 (10%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           DI   T+L+  Y    +V   R++F    +  R+ V + +++T Y         + LF  
Sbjct: 90  DIRVGTSLVDMYMNWHSVLDGRKVFEG--MLKRNVVTWTSLLTGYIQAGVLLDVMSLFFR 147

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCM-----QMHCTVVKSGTGLFTSVLNALISV 194
           MR + V P+ FTF+SVLS +A       Q M      +H   +K G      V N+L+++
Sbjct: 148 MRAEGVWPNPFTFSSVLSMVA------SQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNM 201

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY-LDAAREFLDGMSE 253
           Y KC          L+  AR VF  M  RD +SW T+M G V N   L+A + F D  S 
Sbjct: 202 YAKC---------GLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRS- 251

Query: 254 NVGVAWNALISGYVH--RELKMLMLRIQLDE-------FTYTSVISAC--ANSGLFRLGK 302
           ++ +   +  S  ++    LK L L  QL          +Y +V++A   A +   +L K
Sbjct: 252 SITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDK 311

Query: 303 QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWN------ 356
            +  +LL + ++    ++  ++  +     + G +  A  +F++M E D V+ N      
Sbjct: 312 ALDVFLLMSGSQNVVSWTAMIDGCI-----QNGDIPLAAALFSRMRE-DGVAPNDLTYST 365

Query: 357 ------------------------------AILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
                                         A++ +Y      +EA S+F+ + +++++SW
Sbjct: 366 ILTVSEASFPPQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSW 425

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA-LENGRQLHAQLV 445
           + M++  AQ G        F +M + G KP ++  + AI +CA   A ++ GRQ HA  +
Sbjct: 426 SAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISI 485

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIE 505
                 +L   +AL++MYAR G +E A CVF    + D +SWN+M++   QHG   +A++
Sbjct: 486 KHRCHDALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALD 545

Query: 506 LYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLL 565
           ++ QM  EGI  D +TFL+V+  C HAGLV+EG++YF+ M   YGI P  DHYA  +DL 
Sbjct: 546 VFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLY 605

Query: 566 CRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYV 625
            RAGK  E   +I+ +PF     IW ALL  CR+H N++LG  AAE+L  L P  + TYV
Sbjct: 606 SRAGKLDETMSLIEGMPFPAGPTIWRALLGACRVHKNVELGKLAAEKLLSLEPLDSATYV 665

Query: 626 LLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYK 685
           LLSN+Y+  G+W +   VRKLM  + V+KE GCSWI++ NKVH F+  D +HP ++ +Y 
Sbjct: 666 LLSNIYSAAGKWKEKDEVRKLMDTKKVRKEAGCSWIQIKNKVHFFIASDKSHPLSEQIYA 725

Query: 686 YLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLK 745
            L  +  ++++ GY PDT FV HD+  DQKE  L+ HSE+LA+AFGL+  P  A + + K
Sbjct: 726 KLRAMTAKLKQEGYCPDTSFVPHDVAEDQKEAMLAMHSERLALAFGLIATPPAAPLHIFK 785

Query: 746 NLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           NLR+ GD H   K +S++  REIV+RD  RFHHF+ G CSCGD+W
Sbjct: 786 NLRVSGDGHTVMKMVSEIEDREIVMRDCCRFHHFKSGVCSCGDFW 830



 Score =  122 bits (306), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 153/333 (45%), Gaps = 45/333 (13%)

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           +I  C +     LGKQ+HA  +R          + V  +LV +Y                
Sbjct: 61  IIKICGSVPDRVLGKQLHALCVRCGHD---HGDIRVGTSLVDMY---------------- 101

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
                ++W+++L          + + +FE M +RN+++WT +++G  Q G   + + LF 
Sbjct: 102 -----MNWHSVL----------DGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFF 146

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467
           +MR EG  P  + F+  ++  A  G ++ G+ +HAQ +  G  S++   N+L+ MYA+CG
Sbjct: 147 RMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCG 206

Query: 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
           +VE A  VF  M   D VSWN ++A L  +G    A++L+        +    T+ TV++
Sbjct: 207 LVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVIN 266

Query: 528 AC---NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584
            C    H GL     R   +    +G     +     +D   +AG+  +A DV   +   
Sbjct: 267 LCANLKHLGLA----RQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGS 322

Query: 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
            +   W A++ GC  +G+I L    A  LF  M
Sbjct: 323 QNVVSWTAMIDGCIQNGDIPL----AAALFSRM 351



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 106/256 (41%), Gaps = 14/256 (5%)

Query: 386 WTVMISGLAQNGYGEEGLKLF-SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
           WT+  S   Q G+  + L  F    R +G      A  G I  C  +     G+QLHA  
Sbjct: 23  WTMPFSTTWQ-GFVHQALDHFLDAHRRQGRCVGGGALLGIIKICGSVPDRVLGKQLHALC 81

Query: 445 VHSGYD-SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
           V  G+D   +  G +L+ MY     V     VF  M   + V+W +++    Q G     
Sbjct: 82  VRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDV 141

Query: 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563
           + L+ +M  EG+ P+  TF +VLS     G+V  G ++       +G           ++
Sbjct: 142 MSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLG-QHVHAQSIKFGCCSTVFVCNSLMN 200

Query: 564 LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ-----LMP 618
           +  + G   EA+ V   +  +     W  L+AG  ++G  DL    A QLF      +  
Sbjct: 201 MYAKCGLVEEARVVFCRMETRDMVS-WNTLMAGLVLNGR-DL---EALQLFHDSRSSITM 255

Query: 619 HHAGTYVLLSNMYANL 634
               TY  + N+ ANL
Sbjct: 256 LTESTYSTVINLCANL 271


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 260/717 (36%), Positives = 385/717 (53%), Gaps = 76/717 (10%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + D+   T LI  Y+   +V+ A + F +  L+ RD V + AMI A   +     A  L+
Sbjct: 137 EGDVFVGTALINMYNKCGSVRGAWDSFKR--LEHRDVVSWTAMIAACVQHDQFALARWLY 194

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           R M+ D V P+  T  +V +A                  +  G  ++  V + ++   V+
Sbjct: 195 RRMQLDGVVPNKITLYTVFNAYG------------DPNYLSEGKFVYGLVSSGVMESDVR 242

Query: 198 CVSSP--FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND-YLDAAREFLDGMSEN 254
            ++S      +  L+G ARR+F++M +RD ++W  ++T YV+N+ + +A R F  G  + 
Sbjct: 243 VMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLF--GRLQQ 300

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
            GV  N +          +LML +      YTS+ S          GK +H  +     +
Sbjct: 301 DGVKANDITF--------VLMLNV------YTSLTSLAK-------GKVIHELV----KE 335

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
              +    V  AL++LY +C    +A  IF  M  +D+++                    
Sbjct: 336 AGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVIT-------------------- 375

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
                      WTVM    AQNG+ +E L+LF +M+LEG +P        + +CA L AL
Sbjct: 376 -----------WTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAAL 424

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
           + GRQ+H+ ++ + +   +    ALI MY +CG +  A  VF  M   D + WN+M+ A 
Sbjct: 425 QKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAY 484

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
            QHG     ++L+ QM  +G+  D ++F++VLSA +H+G V +G +YF  M   + I P 
Sbjct: 485 AQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPT 544

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLP-FKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
            + Y   +DLL RAG+  EA D++  L    P   +W  LL  CR H   D    AAEQ+
Sbjct: 545 PELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQV 604

Query: 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVD 673
            +  P H+G YV+LSN+YA  G WD   R+RKLMR RGVKKEPG S IE+ N+VH FL  
Sbjct: 605 LERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEG 664

Query: 674 DTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLM 733
           D +HP    +Y  L+ L  EMR  GY+PDTK +LHD+E ++KE  L  HSE+LA+AFGL+
Sbjct: 665 DRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLI 724

Query: 734 KLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             P G  +RV+KNLR+C DCH A K++SK+ GREI+VRD  RFH+F+DG+CSC DYW
Sbjct: 725 STPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 781



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 139/604 (23%), Positives = 244/604 (40%), Gaps = 116/604 (19%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           + + LQ C     +     R VH H+   GF+    +   LI +Y +   +  A+ +F+ 
Sbjct: 7   FVALLQRCSSAKNVDH--GRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEI 64

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           + + D+ A                                 +  MI  Y    +   A+ 
Sbjct: 65  LERKDVFA---------------------------------WTRMIGIYCQQGDYDRALG 91

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           +F  M+ +DV P   T+ ++L+A A   E  K  M++H  +++ G      V  ALI++Y
Sbjct: 92  MFYQMQEEDVMPTKVTYVAILNACA-STESLKDGMEIHGQILQQGFEGDVFVGTALINMY 150

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            KC S         +  A   F  +  RD +SWT M+   V++D    AR          
Sbjct: 151 NKCGS---------VRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALAR---------- 191

Query: 256 GVAWNALISGYVHRELKMLMLRIQLD-----EFTYTSVISACANSGLFRLGKQVHAYLLR 310
              W              L  R+QLD     + T  +V +A  +      GK V+  +  
Sbjct: 192 ---W--------------LYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLV-- 232

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
             +    E  + V N+ V ++   G + +AR +F  M +RD+V+WN +++ YV       
Sbjct: 233 --SSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYV------- 283

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
                                   QN    E ++LF +++ +G K  D  F   +     
Sbjct: 284 ------------------------QNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTS 319

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
           L +L  G+ +H  +  +GYD       AL+++Y RC     A  +F  M + D ++W  M
Sbjct: 320 LTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVM 379

Query: 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR-YFETMHGPY 549
             A  Q+G    A++L+++M  EG  P   T + VL  C H   +++GR+ +   +   +
Sbjct: 380 CVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRF 439

Query: 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609
            +    +     I++  + GK +EA  V + +  K    +W ++L     HG  D  +Q 
Sbjct: 440 RMEMVVE--TALINMYGKCGKMAEAMSVFEKMA-KRDILVWNSMLGAYAQHGYYDETLQL 496

Query: 610 AEQL 613
             Q+
Sbjct: 497 FNQM 500



 Score =  126 bits (316), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 112/225 (49%), Gaps = 7/225 (3%)

Query: 322 PVNNALVTLYWKCG---KVNEARDIFNQMPERDLVSWNAI----LSAYVSAGLIDEAKSL 374
           P     V L  +C     V+  R +   + +R     N +    +  Y   G + EA+ +
Sbjct: 2   PDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 61

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
           FE +  +++ +WT MI    Q G  +  L +F QM+ E   P    +   + +CA   +L
Sbjct: 62  FEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESL 121

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
           ++G ++H Q++  G++  +  G ALI MY +CG V  A   F  + + D VSW AMIAA 
Sbjct: 122 KDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAAC 181

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
            QH   A A  LY +M  +G++P++IT  TV +A      + EG+
Sbjct: 182 VQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGK 226



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 112/503 (22%), Positives = 209/503 (41%), Gaps = 107/503 (21%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIY-----CKSLKLVYARTLFDEIPQPDIVARTT 86
           +LAR ++  M   G  P +  +  + + Y         K VY   +   + + D+    +
Sbjct: 188 ALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYG-LVSSGVMESDVRVMNS 246

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
            +  +  +  +  AR +F    +  RD V +N +IT Y  N N   A+ LF  +++D VK
Sbjct: 247 AVNMFGNAGLLGDARRLFED--MVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVK 304

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
            ++ TF  +L+    +    K  + +H  V ++G      V  AL+S+Y +C  +P    
Sbjct: 305 ANDITFVLMLNVYTSLTSLAKGKV-IHELVKEAGYDRDAVVATALMSLYGRC-EAP---- 358

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
               G A ++F +M  +D ++WT M   Y +N +   A +    M        +A     
Sbjct: 359 ----GQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSA----- 409

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                            T  +V+  CA+    + G+Q+H++++    +      + V  A
Sbjct: 410 -----------------TLVAVLDTCAHLAALQKGRQIHSHIIENRFR----MEMVVETA 448

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           L+ +Y KCGK+ EA  +F +M +RD++ WN++L AY   G  DE                
Sbjct: 449 LINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDET--------------- 493

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
                           L+LF+QM+L+G K    +F   +++ +  G++ +G Q    ++ 
Sbjct: 494 ----------------LQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQ 537

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
                                        F+  P  +   +  ++  LG+ G    A+++
Sbjct: 538 D----------------------------FSITPTPE--LYGCVVDLLGRAGRIQEAVDI 567

Query: 507 YEQMLKEGILPDRITFLTVLSAC 529
             ++   G LPD I ++T+L AC
Sbjct: 568 VLKL--SGCLPDGILWMTLLGAC 588



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 124/314 (39%), Gaps = 53/314 (16%)

Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
           KP    F   +  C+    +++GR++H  +   G++ +      LI MYA+CG V  A  
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
           VF  +   D  +W  MI    Q G+  RA+ ++ QM +E ++P ++T++ +L+AC     
Sbjct: 61  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 120

Query: 535 VKEGRRYFETMHGPY---GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
           +K+G      +HG     G           I++  + G    A D    L  +     W 
Sbjct: 121 LKDGME----IHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVS-WT 175

Query: 592 ALLAGCRIHGNIDLG--IQAAEQLFQLMPHHAGTYVLLS--------------------- 628
           A++A C  H    L   +    QL  ++P+    Y + +                     
Sbjct: 176 AMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSG 235

Query: 629 -------------NMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
                        NM+ N G   DA R+ + M DR V      +W    N V    V + 
Sbjct: 236 VMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDV-----VTW----NIVITLYVQNE 286

Query: 676 AHPEAQAVYKYLEQ 689
              EA  ++  L+Q
Sbjct: 287 NFGEAVRLFGRLQQ 300


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/606 (39%), Positives = 343/606 (56%), Gaps = 64/606 (10%)

Query: 186 SVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245
           +VL  LI+    C S+P ++S   M  A R+FD++P+ D + + TM  GY + D  D  R
Sbjct: 67  TVLTKLINF---CTSNPTIAS---MDHAHRMFDKIPQPDIVLFNTMARGYARFD--DPLR 118

Query: 246 EFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
             L        +    L SG +             D++T++S++ ACA       GKQ+H
Sbjct: 119 AIL--------LCSQVLCSGLLP------------DDYTFSSLLKACARLKALEEGKQLH 158

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365
              ++         ++ V   L+ +Y  C  V+ AR +                      
Sbjct: 159 CLAVKLGVGD----NMYVCPTLINMYTACNDVDAARRV---------------------- 192

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425
                    F+ + E  ++++  +I+  A+N    E L LF +++  G KP D     A+
Sbjct: 193 ---------FDKIGEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVAL 243

Query: 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV 485
           +SCA LGAL+ GR +H  +  +G+D  +    ALI MYA+CG ++ A  VF  MP  D+ 
Sbjct: 244 SSCALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQ 303

Query: 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETM 545
           +W+AMI A   HG+G++AI +  +M K  + PD ITFL +L AC+H GLV+EG  YF +M
Sbjct: 304 AWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSM 363

Query: 546 HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDL 605
              YGI P   HY   IDLL RAG+  EA   ID LP KP+  +W  LL+ C  HGN+++
Sbjct: 364 THEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEM 423

Query: 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDN 665
                +++F+L   H G YV+LSN+ A  GRWDD   +RK+M D+G  K PGCS IEV+N
Sbjct: 424 AKLVIQRIFELDDSHGGDYVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEVNN 483

Query: 666 KVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLH-DMESDQKEYALSTHSE 724
            VH F   D  H  +  ++  L++LV E++  GYVPDT  V + D+E ++KE  L  HSE
Sbjct: 484 VVHEFFSGDGVHSTSTILHHALDELVKELKLAGYVPDTSLVFYADIEDEEKEIVLRYHSE 543

Query: 725 KLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKC 784
           KLA+ +GL+  P G T+RV+KNLR+C DCHNA KF+S + GR+I++RD +RFHHF+DGKC
Sbjct: 544 KLAITYGLLNTPPGTTIRVVKNLRVCVDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKC 603

Query: 785 SCGDYW 790
           SCGDYW
Sbjct: 604 SCGDYW 609



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 111/445 (24%), Positives = 193/445 (43%), Gaps = 80/445 (17%)

Query: 62  KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKL---AREMFNKTPLKMRDTVFYN 118
           + LK + A T+      P ++  T LI   +++  +     A  MF+K P    D V +N
Sbjct: 49  RELKQIQAYTIKTHQNNPTVL--TKLINFCTSNPTIASMDHAHRMFDKIP--QPDIVLFN 104

Query: 119 AMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALI--VEEEKQCMQMHCTV 176
            M   Y+   +   AI L   +    + PD++TF+S+L A A +  +EE K   Q+HC  
Sbjct: 105 TMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACARLKALEEGK---QLHCLA 161

Query: 177 VKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV 236
           VK G G    V   LI++Y  C         + + AARRVFD++ E   +++  ++T   
Sbjct: 162 VKLGVGDNMYVCPTLINMYTAC---------NDVDAARRVFDKIGEPCVVAYNAIITSCA 212

Query: 237 KNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSG 296
           +N   + A      + E          SG    ++ ML+             +S+CA  G
Sbjct: 213 RNSRPNEALALFRELQE----------SGLKPTDVTMLV------------ALSSCALLG 250

Query: 297 LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWN 356
              LG+ +H Y+     K   +  + VN AL+ +Y KCG +++A  +F  MP RD  +W+
Sbjct: 251 ALDLGRWIHEYV----KKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWS 306

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
           A++ AY                               A +G+G + + +  +M+    +P
Sbjct: 307 AMIVAY-------------------------------ATHGHGSQAISMLREMKKAKVQP 335

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCV 475
            +  F G + +C+  G +E G +    + H  G   S+     +I +  R G +E A   
Sbjct: 336 DEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKF 395

Query: 476 FNTMP-NVDSVSWNAMIAALGQHGN 499
            + +P     + W  ++++   HGN
Sbjct: 396 IDELPIKPTPILWRTLLSSCSSHGN 420



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 151/341 (44%), Gaps = 25/341 (7%)

Query: 286 TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI-- 343
           T+ I  C +  L +L  +   +   T A   P      ++++++L  KC  + E + I  
Sbjct: 3   TTPILQCVSHSLTKLNTEAPRHEPNTAALEPP------SSSILSLIPKCTSLRELKQIQA 56

Query: 344 ----FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
                +Q     L       ++  +   +D A  +F+ + + +++ +  M  G A+    
Sbjct: 57  YTIKTHQNNPTVLTKLINFCTSNPTIASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDP 116

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
              + L SQ+   G  P DY F+  + +CA L ALE G+QLH   V  G   ++     L
Sbjct: 117 LRAILLCSQVLCSGLLPDDYTFSSLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTL 176

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           I MY  C  V+AA  VF+ +     V++NA+I +  ++     A+ L+ ++ + G+ P  
Sbjct: 177 INMYTACNDVDAARRVFDKIGEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTD 236

Query: 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR----FIDLLCRAGKFSEAK 575
           +T L  LS+C   G +  GR   E     Y    G D Y +     ID+  + G   +A 
Sbjct: 237 VTMLVALSSCALLGALDLGRWIHE-----YVKKNGFDQYVKVNTALIDMYAKCGSLDDAV 291

Query: 576 DVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
            V   +P + +   W A++     HG+   G QA   L ++
Sbjct: 292 SVFKDMPRRDTQA-WSAMIVAYATHGH---GSQAISMLREM 328



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 142/296 (47%), Gaps = 38/296 (12%)

Query: 86  TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
           TLI  Y+A ++V  AR +F+K  +     V YNA+IT+ + NS  + A+ LFR+++   +
Sbjct: 175 TLINMYTACNDVDAARRVFDK--IGEPCVVAYNAIITSCARNSRPNEALALFRELQESGL 232

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVS 205
           KP + T    LS+ AL+   +     +H  V K+G   +  V  ALI +Y KC S     
Sbjct: 233 KPTDVTMLVALSSCALLGALDLG-RWIHEYVKKNGFDQYVKVNTALIDMYAKCGS----- 286

Query: 206 SRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265
               +  A  VF +MP RD  +W+ M+  Y  + +   A   L                 
Sbjct: 287 ----LDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAISML----------------- 325

Query: 266 YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
              RE+K    ++Q DE T+  ++ AC+++GL   G + + + +  E    P  S+    
Sbjct: 326 ---REMK--KAKVQPDEITFLGILYACSHTGLVEEGYE-YFHSMTHEYGIVP--SIKHYG 377

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDL-VSWNAILSAYVSAGLIDEAKSLFEAMRE 380
            ++ L  + G++ EA    +++P +   + W  +LS+  S G ++ AK + + + E
Sbjct: 378 CMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFE 433



 Score = 45.4 bits (106), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 35/135 (25%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R +H ++  +GF     +   LID+Y K   L  A ++F ++P+ D  A + +I AY+
Sbjct: 254 LGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYA 313

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                             + +G  AI + R+M++  V+PD  TF
Sbjct: 314 T---------------------------------HGHGSQAISMLREMKKAKVQPDEITF 340

Query: 153 TSVLSALAL--IVEE 165
             +L A +   +VEE
Sbjct: 341 LGILYACSHTGLVEE 355


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 255/786 (32%), Positives = 394/786 (50%), Gaps = 122/786 (15%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           + + L+LC  R  + +   R+VHA + + G          L ++Y K  +   AR +FD 
Sbjct: 19  FTALLKLCAARADLAT--GRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDR 76

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P                                  RD V +NA++  Y+ N    +A+E
Sbjct: 77  MPS---------------------------------RDRVAWNAVVAGYARNGLPSSAME 103

Query: 136 LFRDMRRDD--VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
               M+ ++   +PD+ T  SVL A A        C ++H   +++G     +V  A++ 
Sbjct: 104 AVVRMQGEEGGERPDSVTLVSVLPACA-DARALHACREVHAFALRAGLDELVNVSTAVLD 162

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
            Y KC            GA                            ++AAR   D M  
Sbjct: 163 AYCKC------------GA----------------------------VEAARAVFDCMPV 182

Query: 254 NVGVAWNALISGYVHRE---------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304
              V+WNA+I GY              +M+   + + + +  + + AC   G     ++V
Sbjct: 183 RNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRV 242

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVS 364
           H  L+R         ++ V NAL+T Y KC + + A  +FN++  +              
Sbjct: 243 HELLVRVGLSS----NVSVTNALITTYAKCKRADLAAQVFNELGNK-------------- 284

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
                           +  +SW  MI G  QN   E+  +LF++M+LE  +P  +     
Sbjct: 285 ----------------KTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSV 328

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           I + A +      R +H   +    D  +    ALI MY++CG V  A  +F++  +   
Sbjct: 329 IPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHV 388

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
           ++WNAMI   G HG G  A+EL+E+M   G LP+  TFL+VL+AC+HAGLV EG++YF +
Sbjct: 389 ITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFAS 448

Query: 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
           M   YG+ PG +HY   +DLL RAGK  EA   I ++P +P   ++ A+L  C++H N++
Sbjct: 449 MKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVE 508

Query: 605 LGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVD 664
           L  ++A+ +F+L P     +VLL+N+YAN   W D ARVR  M  +G++K PG S I++ 
Sbjct: 509 LAEESAQIIFELGPEEGVYHVLLANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLK 568

Query: 665 NKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSE 724
           N+VH F    T H  A+ +Y  L +L+ E++ +GYVPDT  + HD+E D K   L+THSE
Sbjct: 569 NEVHTFYSGSTNHQHAKDIYARLAKLIEEIKDMGYVPDTDSI-HDVEDDVKAQLLNTHSE 627

Query: 725 KLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKC 784
           KLA+A+GL++   G T+++ KNLR+C DCHNA K +S + GREI++RD +RFHHF+DGKC
Sbjct: 628 KLAIAYGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLLTGREIIMRDIQRFHHFKDGKC 687

Query: 785 SCGDYW 790
           SCGDYW
Sbjct: 688 SCGDYW 693



 Score =  139 bits (350), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 144/313 (46%), Gaps = 34/313 (10%)

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
           T+T+++  CA       G+ VHA L   EA+     S+  + AL  +Y+KC +  +AR +
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQL---EARGLASESI-ASTALANMYFKCRRPADARRV 73

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
           F++MP RD V+WNA+++ Y   GL   A      M+                   GEEG 
Sbjct: 74  FDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQ-------------------GEEG- 113

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
                    G +P        + +CA   AL   R++HA  + +G D  ++   A++  Y
Sbjct: 114 ---------GERPDSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAY 164

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
            +CG VEAA  VF+ MP  +SVSWNAMI     +GN   A+ L+ +M++EG+     + L
Sbjct: 165 CKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVL 224

Query: 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF 583
             L AC   G + E RR  E +    G+          I    +  +   A  V + L  
Sbjct: 225 AALQACGELGYLDEVRRVHELL-VRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGN 283

Query: 584 KPSAPIWEALLAG 596
           K +   W A++ G
Sbjct: 284 KKTRISWNAMILG 296


>gi|356531902|ref|XP_003534515.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 245/718 (34%), Positives = 397/718 (55%), Gaps = 50/718 (6%)

Query: 87   LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
            L+  Y  S N+  AR++F++ P   R+T  +  +I+ +S   +     +LFR+MR     
Sbjct: 330  LLTLYVKSSNMDHARKLFDEIP--QRNTQTWTILISGFSRAGSSEVVFKLFREMRAKGAC 387

Query: 147  PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
            P+ +T +S+    +L +  +     +H  ++++G      + N+++ +Y+KC        
Sbjct: 388  PNQYTLSSLFKCCSLDINLQLG-KGVHAWMLRNGIDADVVLGNSILDLYLKC-------- 438

Query: 207  RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG- 265
              +   A RVF+ M E D +SW  M++ Y++   ++ + +    +     V+WN ++ G 
Sbjct: 439  -KVFEYAERVFELMNEGDVVSWNIMISAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGL 497

Query: 266  ----YVHRELKMLMLRIQL-DEF---TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                Y  + L+ L   ++   EF   T++  +   ++  L  LG+Q+H  +L+       
Sbjct: 498  MQFGYERQALEQLYCMVECGTEFSVVTFSIALILSSSLSLVELGRQLHGMVLK------- 550

Query: 318  EFSLP----VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA-ILSAYVSAGLIDEAK 372
             F       + ++LV +Y KCG+++ A  +   +P   L + NA +    + AG++    
Sbjct: 551  -FGFCRDGFIRSSLVEMYCKCGRMDNASIVLKDVPLDFLKNGNAGVTCKELKAGIV---- 605

Query: 373  SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
                        SW +M+SG   NG  E+GLK F  M  E            I++CA  G
Sbjct: 606  ------------SWGLMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAG 653

Query: 433  ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
             LE GR +HA     G+      G++LI MY++ G ++ A  +F      + V W +MI+
Sbjct: 654  ILEFGRHVHAYNHKIGHRIDAYVGSSLIDMYSKSGSLDDAWTIFRQTNEPNIVFWTSMIS 713

Query: 493  ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552
                HG G +AI L+E+ML +GI+P+ +TFL VL+AC HAGL++EG RYF  M   Y I 
Sbjct: 714  GCALHGQGKQAICLFEEMLNQGIIPNEVTFLGVLNACCHAGLLEEGCRYFRMMKDAYCIN 773

Query: 553  PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
            PG +H    +DL  RAG  +E K+ I          +W++ L+ CR+H N+++G   +E 
Sbjct: 774  PGVEHCTSMVDLYGRAGHLTETKNFIFENGISHLTSVWKSFLSSCRLHKNVEMGKWVSEM 833

Query: 613  LFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLV 672
            L Q+ P   G YVLLSNM A+  RWD+AARVR LM  RG+KK+PG SWI++ +++H F++
Sbjct: 834  LLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQRGIKKQPGQSWIQLKDQIHTFIM 893

Query: 673  DDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGL 732
             D +HP+ + +Y YL+ L+  ++++GY  D K V+ D+E +Q E  +S HSEKLAV FG+
Sbjct: 894  GDRSHPQDEEIYSYLDILIGRLKEIGYSFDVKLVMQDVEEEQGEVLISHHSEKLAVVFGI 953

Query: 733  MKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            +       +R++KNLRIC DCHN  K+ S+++ REI++RD  RFHHF+ G CSCGDYW
Sbjct: 954  INTANRTPIRIIKNLRICTDCHNFIKYASQLLDREIILRDIHRFHHFKHGGCSCGDYW 1011



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 121/498 (24%), Positives = 233/498 (46%), Gaps = 60/498 (12%)

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H   VK+G+    +  N L+++YVK          S M  AR++FDE+P+R+  +WT +
Sbjct: 311 LHALSVKNGSLQTLNSANYLLTLYVK---------SSNMDHARKLFDEIPQRNTQTWTIL 361

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           ++G+ +    +   +    M                             +++T +S+   
Sbjct: 362 ISGFSRAGSSEVVFKLFREMRAKGACP----------------------NQYTLSSLFKC 399

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           C+     +LGK VHA++LR          + + N+++ LY KC     A  +F  M E D
Sbjct: 400 CSLDINLQLGKGVHAWMLRNGIDA----DVVLGNSILDLYLKCKVFEYAERVFELMNEGD 455

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
           +VSWN ++SAY+ AG ++++  +F  +  ++++SW  ++ GL Q GY  + L+    M  
Sbjct: 456 VVSWNIMISAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLMQFGYERQALEQLYCMVE 515

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
            G +     F+ A+   + L  +E GRQLH  ++  G+       ++L+ MY +CG ++ 
Sbjct: 516 CGTEFSVVTFSIALILSSSLSLVELGRQLHGMVLKFGFCRDGFIRSSLVEMYCKCGRMDN 575

Query: 472 ANCVFNTMP----------------NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI 515
           A+ V   +P                    VSW  M++    +G     ++ +  M++E +
Sbjct: 576 ASIVLKDVPLDFLKNGNAGVTCKELKAGIVSWGLMVSGYVWNGKYEDGLKTFRLMVRELV 635

Query: 516 LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY--ARFIDLLCRAGKFSE 573
           + D  T  T++SAC +AG+++ GR      H    I    D Y  +  ID+  ++G   +
Sbjct: 636 VVDIRTVTTIISACANAGILEFGRHVHAYNH---KIGHRIDAYVGSSLIDMYSKSGSLDD 692

Query: 574 AKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ--LMPHHAGTYVLLSNMY 631
           A  +      +P+   W ++++GC +HG     I   E++    ++P+   T++ + N  
Sbjct: 693 AWTIFRQTN-EPNIVFWTSMISGCALHGQGKQAICLFEEMLNQGIIPNEV-TFLGVLNAC 750

Query: 632 ANLGRWDDAARVRKLMRD 649
            + G  ++  R  ++M+D
Sbjct: 751 CHAGLLEEGCRYFRMMKD 768



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 127/518 (24%), Positives = 226/518 (43%), Gaps = 80/518 (15%)

Query: 29  ITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLI 88
           I   L + VHA M+ +G      + N ++D+Y K     YA  +F+ + + D+V+   +I
Sbjct: 404 INLQLGKGVHAWMLRNGIDADVVLGNSILDLYLKCKVFEYAERVFELMNEGDVVSWNIMI 463

Query: 89  AAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPD 148
           +AY  + +V+ + +MF + P K  D V +N ++           A+E    M     +  
Sbjct: 464 SAYLRAGDVEKSLDMFRRLPYK--DVVSWNTIVDGLMQFGYERQALEQLYCMVECGTEFS 521

Query: 149 NFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
             TF+  L   + +   E    Q+H  V+K G      + ++L+ +Y KC          
Sbjct: 522 VVTFSIALILSSSLSLVELG-RQLHGMVLKFGFCRDGFIRSSLVEMYCKC---------G 571

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAA-REFLDGMSENVGVAWNALISGYV 267
            M  A  V  ++P             ++KN       +E   G+     V+W  ++SGYV
Sbjct: 572 RMDNASIVLKDVP-----------LDFLKNGNAGVTCKELKAGI-----VSWGLMVSGYV 615

Query: 268 -----HRELKM--LMLR--IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                   LK   LM+R  + +D  T T++ISACAN+G+   G+ VHAY      K    
Sbjct: 616 WNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAY----NHKIGHR 671

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
               V ++L+ +Y K G +++A  IF Q  E ++V W +++                   
Sbjct: 672 IDAYVGSSLIDMYSKSGSLDDAWTIFRQTNEPNIVFWTSMI------------------- 712

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
                       SG A +G G++ + LF +M  +G  P +  F G + +C   G LE G 
Sbjct: 713 ------------SGCALHGQGKQAICLFEEMLNQGIIPNEVTFLGVLNACCHAGLLEEGC 760

Query: 439 QLHAQLVHSGY--DSSLSAGNALITMYARCG-VVEAANCVF-NTMPNVDSVSWNAMIAAL 494
           + + +++   Y  +  +    +++ +Y R G + E  N +F N + ++ SV W + +++ 
Sbjct: 761 R-YFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTETKNFIFENGISHLTSV-WKSFLSSC 818

Query: 495 GQHGNGARAIELYEQMLKEGIL-PDRITFLTVLSACNH 531
             H N      + E +L+     P     L+ + A NH
Sbjct: 819 RLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNH 856


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 251/644 (38%), Positives = 351/644 (54%), Gaps = 66/644 (10%)

Query: 147  PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
            P + T    L + + +    +   Q+H   +K  +     VL +L+S+Y KC        
Sbjct: 547  PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKC-------- 598

Query: 207  RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              L+  A+RVFDEMP    + WT ++T Y     +DA       + E V VA NA  +G 
Sbjct: 599  -GLLHRAQRVFDEMPHPSTVPWTALITAY-----MDAG-----DLREAVHVARNAFANG- 646

Query: 267  VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                       ++ D FT   V++ACA       G+ V     R   +     S+ V  A
Sbjct: 647  -----------MRPDSFTAVRVLTACARIADLATGETV----WRAAEQEGVAQSVFVATA 691

Query: 327  LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
             V LY KCG++ +AR++F++M  +D V+W A++  Y S                      
Sbjct: 692  AVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYAS---------------------- 729

Query: 387  TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
                     NG+  E L LF  M+ EG KP  YA AGA+++C  LGAL+ GRQ    +  
Sbjct: 730  ---------NGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDW 780

Query: 447  SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
              +  +   G ALI MYA+CG    A  VF  M   D + WNAMI  LG  G+   A  L
Sbjct: 781  DEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFAL 840

Query: 507  YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
              QM K G+  +  TF+ +L +C H GL+++GRRYF  M   Y I P  +HY   +DLL 
Sbjct: 841  VGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLS 900

Query: 567  RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626
            RAG   EA  ++D +P   +A I  ALL GC+IH N +L     +QL  L P ++G YV+
Sbjct: 901  RAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVM 960

Query: 627  LSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKY 686
            LSN+Y+N GRW+DAA++R  M+ +GV+K P CSW+E + KVH F V D +HP +  +YK 
Sbjct: 961  LSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKK 1020

Query: 687  LEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKN 746
            L++L LEM+ +GY P T+ V+ D+E ++KE+ L  HSEKLA+AF L+    G T+RV KN
Sbjct: 1021 LDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKN 1080

Query: 747  LRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            LR+C DCH A K +S++  REI+VRD  RFH FRDG CSC DYW
Sbjct: 1081 LRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1124



 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 121/497 (24%), Positives = 193/497 (38%), Gaps = 114/497 (22%)

Query: 26  RNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVART 85
           R P        +HA  +        H++  L+ +Y K   L  A+ +FDE+P P      
Sbjct: 561 RLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPS----- 615

Query: 86  TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
                                       TV + A+ITAY    +   A+ + R+   + +
Sbjct: 616 ----------------------------TVPWTALITAYMDAGDLREAVHVARNAFANGM 647

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKS----GTGLFTSVLNALISVYVKCVSS 201
           +PD+FT   VL+A A I +     +    TV ++    G      V  A + +YVKC   
Sbjct: 648 RPDSFTAVRVLTACARIAD-----LATGETVWRAAEQEGVAQSVFVATAAVDLYVKC--- 699

Query: 202 PFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNA 261
                   M  AR VFD+M  +D ++W  M+ GY  N +    RE LD            
Sbjct: 700 ------GEMAKAREVFDKMRHKDAVAWGAMVGGYASNGH---PREALDLF---------- 740

Query: 262 LISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
                    L M    ++ D +     +SAC   G   LG+Q    +   E    P    
Sbjct: 741 ---------LAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPV--- 788

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
            +  AL+ +Y KCG   EA  +F QM ++D++ WNA                        
Sbjct: 789 -LGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNA------------------------ 823

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
                  MI GL   G+ +    L  QM   G K  D  F G + SC   G +++GR+  
Sbjct: 824 -------MILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYF 876

Query: 442 AQLVHSGYDSS-LSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
             +    + S  +     ++ + +R G+++ A+ + + MP   ++V   A++     H N
Sbjct: 877 HNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRN 936

Query: 500 GARAIELYEQMLKEGIL 516
                EL E +LK+ IL
Sbjct: 937 ----TELAEHVLKQLIL 949



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 176/401 (43%), Gaps = 63/401 (15%)

Query: 33  LARSVHA--HMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
           L  +VH   +  ++G +P      R++    +   L    T++    Q + VA++  +A 
Sbjct: 632 LREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQ-EGVAQSVFVAT 690

Query: 91  YSASDNVKL-----AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
            +    VK      ARE+F+K  ++ +D V + AM+  Y+ N +   A++LF  M+ + +
Sbjct: 691 AAVDLYVKCGEMAKAREVFDK--MRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGM 748

Query: 146 KPDNFTFTSVLSALALI--VEEEKQCMQMHCTVVKSGTGLFTSVL-NALISVYVKCVSSP 202
           KPD +     LSA   +  ++  +Q ++M    V     L   VL  ALI +Y KC S+ 
Sbjct: 749 KPDCYAVAGALSACTRLGALDLGRQAIRM----VDWDEFLDNPVLGTALIDMYAKCGSTV 804

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL 262
                     A  VF +M ++D + W  M+ G               GM+ +  +A+ AL
Sbjct: 805 ---------EAWVVFQQMRKKDIIVWNAMILGL--------------GMTGHEKIAF-AL 840

Query: 263 ISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ-VHAYLLRTEAKPTPEFSL 321
           +        +M    ++L++ T+  ++ +C ++GL + G++  H         P  E   
Sbjct: 841 VG-------QMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHY- 892

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
                +V L  + G + EA  + + MP   + +   IL A +    I     L E + ++
Sbjct: 893 ---GCMVDLLSRAGLLQEAHQLVDDMP---MPANAVILGALLGGCKIHRNTELAEHVLKQ 946

Query: 382 NLL--SWT----VMISGLAQN-GYGEEGLKLFSQMRLEGFK 415
            +L   W     VM+S +  N G  E+  KL   M+ +G +
Sbjct: 947 LILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVE 987


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/467 (45%), Positives = 297/467 (63%), Gaps = 1/467 (0%)

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM-RERNL 383
           N+++T Y K G +N AR +F+  P +D+VSWNAI+  Y  +  +  A+ LF  M   RN 
Sbjct: 111 NSMITCYCKLGDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNS 170

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
           ++W  MIS   Q G     + +F QM+ E  KP +      +++CA LGAL+ G  +H  
Sbjct: 171 VTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGY 230

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
           +        +  GNALI MY +CG +EAA  VF+ +   +   WN++I  LG +G G  A
Sbjct: 231 IRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEA 290

Query: 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563
           I  +  M KEGI PD +TF+ +LS C+H+GL+  G+RYF  M G YG+ PG +HY   +D
Sbjct: 291 IAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVD 350

Query: 564 LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623
           LL RAG   EA ++I ++P KP++ +  +LL  C+IH +  LG Q  +QL +L P   G 
Sbjct: 351 LLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGN 410

Query: 624 YVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAV 683
           YV LSN+YA+L RWDD    RKLM  RGV K PGCS IEV+N VH F+  DT+HP+   +
Sbjct: 411 YVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQI 470

Query: 684 YKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRV 743
             +L+++  E++  G+VP+T  VLHD+E ++KE A+  HSE++AVAFGLM  P G T+RV
Sbjct: 471 NAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRV 530

Query: 744 LKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +KNLR C DCH+A K +S    REI+VRD KRFHHFR+G CSC DYW
Sbjct: 531 VKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 577



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 106/438 (24%), Positives = 182/438 (41%), Gaps = 101/438 (23%)

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY---- 195
           M R+DV P   +F+ +L + A I  E +     HC ++K G      +   L+  Y    
Sbjct: 1   MLRNDVLPSKTSFSLILRSCA-ISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVG 59

Query: 196 -VKCVSSPF--------VSSRSLMGA---------ARRVFDEMPERDELSWTTMMTGYVK 237
            +KC    F        V++ +++ A         AR +FD M ER+  SW +M+T Y K
Sbjct: 60  DLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCK 119

Query: 238 NDYLDAAREFLDGMSENVGVAWNALISGYVH-------RELKMLM--------------L 276
              +++AR   D       V+WNA+I GY         +EL +LM               
Sbjct: 120 LGDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISA 179

Query: 277 RIQLDEF--------------------TYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
            +Q  EF                    T  S++SACA+ G   +G+ +H Y+     K  
Sbjct: 180 YVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLK-- 237

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
               + + NAL+ +Y KCG +  A D+F+ +  +++  WN+I                  
Sbjct: 238 --IDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSI------------------ 277

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
                        I GL  NG GEE +  F  M  EG KP    F G ++ C+  G L  
Sbjct: 278 -------------IVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSA 324

Query: 437 GRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAAL 494
           G++  ++++   G +  +     ++ +  R G ++ A  +   MP   +S+   +++ A 
Sbjct: 325 GQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRAC 384

Query: 495 GQHGNGARAIELYEQMLK 512
             H +     ++ +Q+L+
Sbjct: 385 QIHKDTKLGEQVTQQLLE 402



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 130/298 (43%), Gaps = 38/298 (12%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
           N +I  YCK   +  AR +FD  P  D+V+   +I  Y  S  +  A+E+F       R+
Sbjct: 111 NSMITCYCKLGDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMG-SARN 169

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMH 173
           +V +N MI+AY        AI +F+ M+ ++VKP   T  S+LSA A +   +     +H
Sbjct: 170 SVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMG-EWIH 228

Query: 174 CTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMT 233
             +      +   + NALI +Y KC           + AA  VF  +  ++   W +++ 
Sbjct: 229 GYIRTKRLKIDVVLGNALIDMYCKC---------GALEAAIDVFHGLSRKNIFCWNSIIV 279

Query: 234 GYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACA 293
           G   N   + A                  I+ ++  E +     I+ D  T+  ++S C+
Sbjct: 280 GLGMNGRGEEA------------------IAAFIVMEKE----GIKPDGVTFVGILSGCS 317

Query: 294 NSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           +SGL   G++  + +L     +P  E        +V L  + G + EA ++   MP +
Sbjct: 318 HSGLLSAGQRYFSEMLGVYGLEPGVEHY----GCMVDLLGRAGYLKEALELIRAMPMK 371



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 96/241 (39%), Gaps = 49/241 (20%)

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P   +F+  + SCA  G  + G   H Q++  G++  +     L+  YA+ G ++ A  V
Sbjct: 8   PSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAKRV 67

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           F  MP  D V+ NAMI+AL +H                                   G V
Sbjct: 68  FMGMPRRDVVANNAMISALSKH-----------------------------------GYV 92

Query: 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
           +E R  F+ M            +   I   C+ G  + A+ + D  P K     W A++ 
Sbjct: 93  EEARNLFDNM-----TERNSCSWNSMITCYCKLGDINSARLMFDCNPVKDVVS-WNAIID 146

Query: 596 G-CRIHGNIDLGIQAAEQLFQLM--PHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           G C+        + AA++LF LM    ++ T+  + + Y   G +  A  + + M+   V
Sbjct: 147 GYCK-----SKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENV 201

Query: 653 K 653
           K
Sbjct: 202 K 202


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/679 (35%), Positives = 368/679 (54%), Gaps = 92/679 (13%)

Query: 191 LISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK-NDYLDA------ 243
           L+S Y  C           +   RRVFD M +++   W  M++ Y K  D+ ++      
Sbjct: 2   LVSFYATCGD---------LKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKI 52

Query: 244 -------------AREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLD 281
                        A E  D + +   ++WN++ISGYV   L         +M+ L I +D
Sbjct: 53  MVEKGIEGKRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVD 112

Query: 282 EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEAR 341
             T  SV+  CA SG   LGK VH+  +++  +    FS    N L+ +Y KCG ++ A 
Sbjct: 113 LATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFS----NTLLDMYSKCGDLDGAL 168

Query: 342 DIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER-------------------- 381
            +F +M ER++VSW ++++ Y   G  D A  L + M +                     
Sbjct: 169 RVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSG 228

Query: 382 -------------------NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG--------- 413
                              NL     ++   A+ G  E    +FS M ++          
Sbjct: 229 SLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG 288

Query: 414 -FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
             KP     A  + +CA L ALE G+++H  ++ +GY S     NAL+ +Y +CGV+  A
Sbjct: 289 ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLA 348

Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
             +F+ +P+ D VSW  MIA  G HG G  AI  + +M   GI PD ++F+++L AC+H+
Sbjct: 349 RLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHS 408

Query: 533 GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592
           GL+++G R+F  M   + I P  +HYA  +DLL R G  S+A   I++LP  P A IW A
Sbjct: 409 GLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGA 468

Query: 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           LL GCRI+ +I+L  + AE++F+L P + G YVLL+N+YA   +W++  R+R+ +  +G+
Sbjct: 469 LLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGL 528

Query: 653 KKEPGCSWIEVDNKVHVFLV-DDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDME 711
           +K PGCSWIE+  +V++F+  ++++HP ++ +   L+++  +M++ GY P TK+ L + +
Sbjct: 529 RKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINAD 588

Query: 712 SDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVR 771
             QKE AL  HSEKLA+AFGL+ LP   T+RV KNLR+CGDCH   KFMSK   REIV+R
Sbjct: 589 EMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLR 648

Query: 772 DGKRFHHFRDGKCSCGDYW 790
           D  RFHHF+DG CSC  +W
Sbjct: 649 DSNRFHHFKDGYCSCRGFW 667



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 125/514 (24%), Positives = 210/514 (40%), Gaps = 117/514 (22%)

Query: 55  RLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVK---------------- 98
           +L+  Y     L   R +FD + + ++     +++ Y+   + K                
Sbjct: 1   KLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEG 60

Query: 99  ----LAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
                A E+F+K  L  RD + +N+MI+ Y  N      + +++ M    +  D  T  S
Sbjct: 61  KRSESASELFDK--LCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIIS 118

Query: 155 VLSALALIVEEEKQCMQM----HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           VL   A     +   + +    H   +KS      +  N L+ +Y KC           +
Sbjct: 119 VLVGCA-----KSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGD---------L 164

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
             A RVF++M ER+ +SWT+M+ GY ++ + D A   L  M E  GV             
Sbjct: 165 DGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQM-EKEGV------------- 210

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
                   +LD    TS++ ACA SG    GK VH Y+           +L V NAL+ +
Sbjct: 211 --------KLDVVAITSILHACARSGSLDNGKDVHDYIKANNMAS----NLFVCNALMDM 258

Query: 331 YWKCGKVNEARDIFNQMPERDLVSW----------------------------------- 355
           Y KCG +  A  +F+ M  +D++SW                                   
Sbjct: 259 YAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIHG 318

Query: 356 --------------NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEE 401
                         NA++  YV  G++  A+ LF+ +  ++L+SWTVMI+G   +GYG E
Sbjct: 319 YILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNE 378

Query: 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG-RQLHAQLVHSGYDSSLSAGNALI 460
            +  F++MR  G +P + +F   + +C+  G LE G R  +        +  L     ++
Sbjct: 379 AIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMV 438

Query: 461 TMYARCGVVEAANCVFNTMPNV-DSVSWNAMIAA 493
            + +R G +  A     T+P   D+  W A++  
Sbjct: 439 DLLSRTGNLSKAYKFIETLPIAPDATIWGALLCG 472



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 163/378 (43%), Gaps = 83/378 (21%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           T SL ++VH+  I S F+ R +  N L+D+Y K   L  A  +F+++ + ++V+ T++IA
Sbjct: 128 TLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIA 187

Query: 90  AYSA---SDNVKLAREMFNKTPLKM---------------------RDTVFY-------- 117
            Y+    SD   +  +   K  +K+                     +D   Y        
Sbjct: 188 GYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMAS 247

Query: 118 -----NAMITAYSHNSNGHAAIELFRDMRRDDV----------KPDNFTFTSVLSALALI 162
                NA++  Y+   +   A  +F  M   D+          KPD+ T   +L A A +
Sbjct: 248 NLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASL 307

Query: 163 VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE 222
              E+   ++H  ++++G      V NAL+ +YVKC          ++G AR +FD +P 
Sbjct: 308 SALERG-KEIHGYILRNGYSSDRHVANALVDLYVKC---------GVLGLARLLFDMIPS 357

Query: 223 RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDE 282
           +D +SWT M+ GY  + Y + A    + M +                        I+ DE
Sbjct: 358 KDLVSWTVMIAGYGMHGYGNEAIATFNEMRD----------------------AGIEPDE 395

Query: 283 FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARD 342
            ++ S++ AC++SGL   G +   Y+++ +    P+  L     +V L  + G +++A  
Sbjct: 396 VSFISILYACSHSGLLEQGWRFF-YIMKNDFNIEPK--LEHYACMVDLLSRTGNLSKAYK 452

Query: 343 IFNQMP-ERDLVSWNAIL 359
               +P   D   W A+L
Sbjct: 453 FIETLPIAPDATIWGALL 470


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 251/644 (38%), Positives = 351/644 (54%), Gaps = 66/644 (10%)

Query: 147  PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
            P + T    L + + +    +   Q+H   +K  +     VL +L+S+Y KC        
Sbjct: 523  PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKC-------- 574

Query: 207  RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              L+  A+RVFDEMP    + WT ++T Y     +DA       + E V VA NA  +G 
Sbjct: 575  -GLLHRAQRVFDEMPHPSTVPWTALITAY-----MDAG-----DLREAVHVARNAFANG- 622

Query: 267  VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                       ++ D FT   V++ACA       G+ V     R   +     S+ V  A
Sbjct: 623  -----------MRPDSFTAVRVLTACARIADLATGETV----WRAAEQEGVAQSVFVATA 667

Query: 327  LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
             V LY KCG++ +AR++F++M  +D V+W A++  Y S                      
Sbjct: 668  AVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYAS---------------------- 705

Query: 387  TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
                     NG+  E L LF  M+ EG KP  YA AGA+++C  LGAL+ GRQ    +  
Sbjct: 706  ---------NGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDW 756

Query: 447  SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
              +  +   G ALI MYA+CG    A  VF  M   D + WNAMI  LG  G+   A  L
Sbjct: 757  DEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFAL 816

Query: 507  YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
              QM K G+  +  TF+ +L +C H GL+++GRRYF  M   Y I P  +HY   +DLL 
Sbjct: 817  VGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLS 876

Query: 567  RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626
            RAG   EA  ++D +P   +A I  ALL GC+IH N +L     +QL  L P ++G YV+
Sbjct: 877  RAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVM 936

Query: 627  LSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKY 686
            LSN+Y+N GRW+DAA++R  M+ +GV+K P CSW+E + KVH F V D +HP +  +YK 
Sbjct: 937  LSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKK 996

Query: 687  LEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKN 746
            L++L LEM+ +GY P T+ V+ D+E ++KE+ L  HSEKLA+AF L+    G T+RV KN
Sbjct: 997  LDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKN 1056

Query: 747  LRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            LR+C DCH A K +S++  REI+VRD  RFH FRDG CSC DYW
Sbjct: 1057 LRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1100



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 121/497 (24%), Positives = 193/497 (38%), Gaps = 114/497 (22%)

Query: 26  RNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVART 85
           R P        +HA  +        H++  L+ +Y K   L  A+ +FDE+P P      
Sbjct: 537 RLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPS----- 591

Query: 86  TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
                                       TV + A+ITAY    +   A+ + R+   + +
Sbjct: 592 ----------------------------TVPWTALITAYMDAGDLREAVHVARNAFANGM 623

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKS----GTGLFTSVLNALISVYVKCVSS 201
           +PD+FT   VL+A A I +     +    TV ++    G      V  A + +YVKC   
Sbjct: 624 RPDSFTAVRVLTACARIAD-----LATGETVWRAAEQEGVAQSVFVATAAVDLYVKC--- 675

Query: 202 PFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNA 261
                   M  AR VFD+M  +D ++W  M+ GY  N +    RE LD            
Sbjct: 676 ------GEMAKAREVFDKMRHKDAVAWGAMVGGYASNGH---PREALDLF---------- 716

Query: 262 LISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
                    L M    ++ D +     +SAC   G   LG+Q    +   E    P    
Sbjct: 717 ---------LAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPV--- 764

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
            +  AL+ +Y KCG   EA  +F QM ++D++ WNA                        
Sbjct: 765 -LGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNA------------------------ 799

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
                  MI GL   G+ +    L  QM   G K  D  F G + SC   G +++GR+  
Sbjct: 800 -------MILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYF 852

Query: 442 AQLVHSGYDSS-LSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
             +    + S  +     ++ + +R G+++ A+ + + MP   ++V   A++     H N
Sbjct: 853 HNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRN 912

Query: 500 GARAIELYEQMLKEGIL 516
                EL E +LK+ IL
Sbjct: 913 ----TELAEHVLKQLIL 925



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 176/401 (43%), Gaps = 63/401 (15%)

Query: 33  LARSVHA--HMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
           L  +VH   +  ++G +P      R++    +   L    T++    Q + VA++  +A 
Sbjct: 608 LREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQ-EGVAQSVFVAT 666

Query: 91  YSASDNVKL-----AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
            +    VK      ARE+F+K  ++ +D V + AM+  Y+ N +   A++LF  M+ + +
Sbjct: 667 AAVDLYVKCGEMAKAREVFDK--MRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGM 724

Query: 146 KPDNFTFTSVLSALALI--VEEEKQCMQMHCTVVKSGTGLFTSVL-NALISVYVKCVSSP 202
           KPD +     LSA   +  ++  +Q ++M    V     L   VL  ALI +Y KC S+ 
Sbjct: 725 KPDCYAVAGALSACTRLGALDLGRQAIRM----VDWDEFLDNPVLGTALIDMYAKCGSTV 780

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL 262
                     A  VF +M ++D + W  M+ G               GM+ +  +A+ AL
Sbjct: 781 ---------EAWVVFQQMRKKDIIVWNAMILGL--------------GMTGHEKIAF-AL 816

Query: 263 ISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ-VHAYLLRTEAKPTPEFSL 321
           +        +M    ++L++ T+  ++ +C ++GL + G++  H         P  E   
Sbjct: 817 VG-------QMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHY- 868

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
                +V L  + G + EA  + + MP   + +   IL A +    I     L E + ++
Sbjct: 869 ---GCMVDLLSRAGLLQEAHQLVDDMP---MPANAVILGALLGGCKIHRNTELAEHVLKQ 922

Query: 382 NLL--SWT----VMISGLAQN-GYGEEGLKLFSQMRLEGFK 415
            +L   W     VM+S +  N G  E+  KL   M+ +G +
Sbjct: 923 LILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVE 963


>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 682

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 254/713 (35%), Positives = 374/713 (52%), Gaps = 76/713 (10%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+V    LI+ Y+    V LAR +F+  P   R+ V  N +++ Y+ +     +++L R 
Sbjct: 44  DVVLHNNLISFYAKCGRVGLARTVFDAMPF--RNAVSANLLMSGYASSGRHKESLQLLRV 101

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEE--KQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           +   D   + +  ++ +SA A +   +  +QC   H   VK+G      V NA++ +Y +
Sbjct: 102 V---DFGMNEYVLSAAVSATANVRSYDMGRQC---HGYAVKAGFAEQRYVFNAVLYMYCQ 155

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C           M  A +VF+ +   D  ++ +M+ GY+    LD +   +  M+     
Sbjct: 156 CAH---------MEDASKVFESVSGFDAFAFNSMINGYLDRGQLDGSLGIVRNMTGEAE- 205

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                                + D  +Y +V+  CA+     LG QVHA  L    K   
Sbjct: 206 ---------------------KWDYVSYVAVLGHCASMKDSVLGAQVHAQAL----KKRL 240

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
           E ++ V +ALV +Y KC  V++A                                  FE 
Sbjct: 241 ELNVYVGSALVDMYGKCDHVHDA-------------------------------NRAFEV 269

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
           + E+N++SWT +++   QN   E+ L+LF  M +EG +P ++ +A A+ SCAGL AL  G
Sbjct: 270 LPEKNVVSWTAVMTAYTQNELYEDALQLFLDMEMEGVQPNEFTYAVALNSCAGLAALRTG 329

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
             L A ++ +G+   L   NAL+ MY++ G +E A+ VF +MP  D VSWN +I     H
Sbjct: 330 NALGACVMKTGHWDHLLVSNALMNMYSKSGSIEDAHRVFISMPLRDVVSWNLIITGYAHH 389

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
           G     +E +  ML   ++P  +TF+ VLSAC   GLV E   Y  TM    GI PG++H
Sbjct: 390 GLAREGMEAFHSMLSAAVIPSYVTFVGVLSACAQLGLVDEAFYYLNTMMKEVGITPGKEH 449

Query: 558 YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           Y   + LLCR G+  EA+  I +         W +LL  C+++ N  LG + AEQ+ QL 
Sbjct: 450 YTCMVGLLCRVGRLDEAERFIVNNCIGTDVVAWRSLLNSCQVYKNYGLGHRVAEQILQLE 509

Query: 618 PHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAH 677
           P   GTYVLLSNMYA   RWD   +VRK MR+R V+K PG SWI V + VHVF  ++  H
Sbjct: 510 PSDVGTYVLLSNMYAKANRWDGVVKVRKHMRERAVRKSPGVSWIHVGSDVHVFTSEEKVH 569

Query: 678 PEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPG 737
           P+   + K LE+L+ +++ +GYVP+   VLHD++ ++KE  L  HSEKLA+AFGL+  P 
Sbjct: 570 PQMDQIAKKLEELIDQIKAIGYVPNFAVVLHDIDDERKEEHLMYHSEKLALAFGLIHTPK 629

Query: 738 GATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           GAT+ ++KNLRIC DCH A K +S V  R+IVVRD  RFH    G CSC DYW
Sbjct: 630 GATIHIMKNLRICDDCHVAIKLISVVTSRKIVVRDAVRFHCIEGGICSCNDYW 682



 Score = 90.1 bits (222), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 104/229 (45%), Gaps = 39/229 (17%)

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           GK +HA L+         F + ++N L++ Y KCG+V  AR +F+ MP R+ VS N ++S
Sbjct: 30  GKALHARLI-----TAAHFDVVLHNNLISFYAKCGRVGLARTVFDAMPFRNAVSANLLMS 84

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
            Y S+G   E+  L                                  +R+  F   +Y 
Sbjct: 85  GYASSGRHKESLQL----------------------------------LRVVDFGMNEYV 110

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
            + A+++ A + + + GRQ H   V +G+       NA++ MY +C  +E A+ VF ++ 
Sbjct: 111 LSAAVSATANVRSYDMGRQCHGYAVKAGFAEQRYVFNAVLYMYCQCAHMEDASKVFESVS 170

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
             D+ ++N+MI      G    ++ +   M  E    D ++++ VL  C
Sbjct: 171 GFDAFAFNSMINGYLDRGQLDGSLGIVRNMTGEAEKWDYVSYVAVLGHC 219


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 256/706 (36%), Positives = 381/706 (53%), Gaps = 71/706 (10%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           +++AYS   N+   R+ F++ P+   D V +NA+I AY  N +       FR M    + 
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVA--DIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGIN 58

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           P     +  LSA      E      +   ++ +G    + V  AL+S+Y K       +S
Sbjct: 59  PGEVGISIFLSACT-DAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAAS 117

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
                    VF  M  RD ++W+ M+  Y +N +   A      M  + GVA N      
Sbjct: 118 ---------VFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLD-GVAPN------ 161

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                          + T  S + ACA+ G  R G  +H    R EA+   +  + V  A
Sbjct: 162 ---------------KVTLVSGLDACASLGDLRSGALMHQ---RVEAQGI-QSGVVVGTA 202

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           LV LY KCG++  A + F Q+ E+++V+W+AI +AY                        
Sbjct: 203 LVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAY------------------------ 238

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH--AQL 444
                  A+N    + +++  +M LEG  P    F   + +CA + AL+ GR++H   Q+
Sbjct: 239 -------ARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQV 291

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
           +  G +S +    AL+ MY++CG +  A  +F+ + ++D V WN++IA   QHG   +A+
Sbjct: 292 LGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKAL 351

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
           EL+E+M  EG+ P  ITF +VL AC+HAG++ +GR++F +  G +GI P  +H+   +DL
Sbjct: 352 ELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDL 411

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624
           L RAG   +++D++  +PF+P    W A L  CR + N+D  I AAE LFQL P     Y
Sbjct: 412 LGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDPRKRAPY 471

Query: 625 VLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVY 684
           VLLSNMYA  GRW D AR+R+ M+     KE G SWIEV ++VH F+  D  HP    ++
Sbjct: 472 VLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIH 531

Query: 685 KYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVL 744
             L++L   M++ GYVPDT+ VLHD++ + KE  +  HSEKLA+AF L+  P G+ +RV+
Sbjct: 532 AELQRLTKLMKEAGYVPDTEMVLHDVKQEVKEIMVGYHSEKLAMAFALLTTPEGSPIRVV 591

Query: 745 KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KNLR+C DCH A KF+SK+V REIVVRD  RFH F++G CSCGDYW
Sbjct: 592 KNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 637



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 116/481 (24%), Positives = 203/481 (42%), Gaps = 79/481 (16%)

Query: 41  MISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDI----VARTTLIAAYSASDN 96
           M+  G  P E  I+  +     + ++   R++   I    I    + +T L++ Y    +
Sbjct: 52  MLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGH 111

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
              A  +F +  +  RD V ++AM+ AY+ N +   A+ LFR M  D V P+  T  S L
Sbjct: 112 CTDAASVFLR--MSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGL 169

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
            A A + +     + MH  V   G      V  AL+++Y KC           + AA   
Sbjct: 170 DACASLGDLRSGAL-MHQRVEAQGIQSGVVVGTALVNLYGKC---------GRIEAAVEA 219

Query: 217 FDEMPERDELSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVAWNALISGYVHRELKMLM 275
           F ++ E++ ++W+ +   Y +ND   DA R                     +HR   M +
Sbjct: 220 FGQIVEKNVVAWSAISAAYARNDRNRDAIR--------------------VLHR---MDL 256

Query: 276 LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVTLYWKC 334
             +  +  T+ SV+ ACA     + G+++H    RT+      E  + V  ALV +Y KC
Sbjct: 257 EGLVPNSTTFVSVLDACAAIAALKQGRRIHE---RTQVLGGGLESDVYVLTALVNMYSKC 313

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
           G +  A D+F+++   DLV WN++++     G  ++A  LFE                  
Sbjct: 314 GNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFE------------------ 355

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV--HSGYDSS 452
                        +MRLEG +P    F   + +C+  G L+ GR+     +  H  +  +
Sbjct: 356 -------------RMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEA 402

Query: 453 LSAGNALITMYARCG-VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
              G  ++ +  R G +V++ + + +       V+W A + A   + N  RAI   E + 
Sbjct: 403 EHFG-CMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLF 461

Query: 512 K 512
           +
Sbjct: 462 Q 462


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/646 (35%), Positives = 372/646 (57%), Gaps = 56/646 (8%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           Q+H  V++SG      V  AL+    KC ++P  S+      A +VF  +P  +   W  
Sbjct: 51  QLHGLVLRSGHFQDHYVSGALL----KCYANPHFSNFDF---ALKVFSSIPNPNVFIWNI 103

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++ G ++N+ L  A  F   M                       ++  + ++FTY ++  
Sbjct: 104 VIKGCLENNKLFKAIYFYGRM-----------------------VIDARPNKFTYPTLFK 140

Query: 291 ACANSGLFRLGKQVHAYLLR-----------------------TEAKP---TPEFSLPVN 324
           AC+ +   + G+Q+H ++++                        +A+    + E  +   
Sbjct: 141 ACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCW 200

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
           N ++  Y KCG +  A+ +F QMP +++ SWN +++     G + +A+ LF+ M ER+ +
Sbjct: 201 NTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEI 260

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
           SW+ M+ G    G  +E L++F QM+ E  +P  +  +  + +C+ +GA++ GR +HA L
Sbjct: 261 SWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYL 320

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
             +        G AL+ MYA+CG ++    VF  M   +  +WNAMI  L  HG    A+
Sbjct: 321 KRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDAL 380

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
           EL+ ++ +  + P+ IT + VL+AC HAG V +G R F+TM   YG+ P  +HY   +DL
Sbjct: 381 ELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDL 440

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624
           L R+G FSEA+D+I+S+P KP+A +W ALL  CRIHGN DL  +  + L +L P ++G Y
Sbjct: 441 LGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRY 500

Query: 625 VLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVY 684
           VLLSN+YA +GR+DD +++RKLM+DRG+K  PG S ++++  VH F + D +HP+ + +Y
Sbjct: 501 VLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIY 560

Query: 685 KYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVL 744
           + L+ +   ++  G+ PDT  VL D++ ++KE A++ HSEKLA+AFGL+    G  + ++
Sbjct: 561 RKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIV 620

Query: 745 KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KNLR+C DCH+A K +S++  REI+VRD  R+HHF++G CSC D+W
Sbjct: 621 KNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 124/514 (24%), Positives = 219/514 (42%), Gaps = 104/514 (20%)

Query: 20  LQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKS--LKLVYARTLFDEIP 77
           L+L D ++  +      +H  ++ SG     ++   L+  Y         +A  +F  IP
Sbjct: 35  LKLFDSKSITSLQYLTQLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIP 94

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
            P++     +I      +N KL + ++           FY  M+                
Sbjct: 95  NPNVFIWNIVIKG--CLENNKLFKAIY-----------FYGRMVI--------------- 126

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY-- 195
                 D +P+ FT+ ++  A + + +  ++  Q+H  VVK G G    + +A I +Y  
Sbjct: 127 ------DARPNKFTYPTLFKACS-VAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYAS 179

Query: 196 ---VKCVSSPFVSSRS----------------LMGAARRVFDEMPERDELSWTTMMTGYV 236
              ++     F S  S                ++ AA+ +F +MP ++  SW  M+ G  
Sbjct: 180 FGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLA 239

Query: 237 KNDYLDAAREFLDGMSENVGVAWNALISGYV----HRELKMLMLRIQLDE-----FTYTS 287
           K   L  AR+  D MSE   ++W++++ GY+    ++E   +  ++Q +E     F  +S
Sbjct: 240 KGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSS 299

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           V++AC+N G    G+ VHAYL R   K        +  AL+ +Y KCG+++   ++F +M
Sbjct: 300 VLAACSNIGAIDQGRWVHAYLKRNSIK----LDAVLGTALLDMYAKCGRLDMGWEVFEEM 355

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
            ER++ +WNA                               MI GLA +G  E+ L+LFS
Sbjct: 356 KEREIFTWNA-------------------------------MIGGLAIHGRAEDALELFS 384

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENG-RQLHAQLVHSGYDSSLSAGNALITMYARC 466
           +++    KP      G +T+CA  G ++ G R         G D  L     ++ +  R 
Sbjct: 385 KLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRS 444

Query: 467 GVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
           G+   A  + N+MP   ++  W A++ A   HGN
Sbjct: 445 GLFSEAEDLINSMPMKPNAAVWGALLGACRIHGN 478



 Score = 99.8 bits (247), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 166/366 (45%), Gaps = 41/366 (11%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
           N +ID Y K   L  A+ LF ++P  +I +   +I   +   N+  AR++F++  +  RD
Sbjct: 201 NTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDE--MSERD 258

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMH 173
            + +++M+  Y        A+E+F+ M+R++ +P  F  +SVL+A + I   + Q   +H
Sbjct: 259 EISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAID-QGRWVH 317

Query: 174 CTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMT 233
             + ++   L   +  AL+ +Y KC        R  MG    VF+EM ER+  +W  M+ 
Sbjct: 318 AYLKRNSIKLDAVLGTALLDMYAKC-------GRLDMGW--EVFEEMKEREIFTWNAMIG 368

Query: 234 GYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACA 293
           G   +   + A E    + E                       R++ +  T   V++ACA
Sbjct: 369 GLAIHGRAEDALELFSKLQEG----------------------RMKPNGITLVGVLTACA 406

Query: 294 NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER-DL 352
           ++G    G ++    +R      PE  L     +V L  + G  +EA D+ N MP + + 
Sbjct: 407 HAGFVDKGLRIFQ-TMREFYGVDPE--LEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNA 463

Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRE---RNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
             W A+L A    G  D A+ + + + E   +N   + ++ +  A+ G  ++  K+   M
Sbjct: 464 AVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLM 523

Query: 410 RLEGFK 415
           +  G K
Sbjct: 524 KDRGIK 529


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/519 (42%), Positives = 320/519 (61%), Gaps = 5/519 (0%)

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           ML   ++ D  TY  VI AC  S +   G  VH +++++      E    + ++L+ LY 
Sbjct: 157 MLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGF----ECDSYIVSSLIHLYA 212

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
               +  A+ +FN    RD+VSWNA++  YV    +  A+ +F+ M  R+++SW  MI+G
Sbjct: 213 NGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMING 272

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
            A  G   E L LF QMR  G KP +      +++CA LGAL+ G  LH  +  +  + +
Sbjct: 273 YAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVN 332

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
              G AL+ MYA+CG +  A  VFN M + D ++WN +IA +  HGN   A +L+++M +
Sbjct: 333 SIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKE 392

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
            G+ P+ ITF+ +LSAC+HAG+V EG++  + M   YGI P  +HY   IDLL RAG   
Sbjct: 393 AGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLE 452

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632
           EA ++I ++P +P+     ALL GCRIHGN +LG    ++L  L P H+G Y+LLSN+YA
Sbjct: 453 EAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYA 512

Query: 633 NLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVL 692
              +WDDA +VR LM+  G+ K PG S IE+   VH F+  D +HPE+  +Y+ L ++  
Sbjct: 513 AAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHT 572

Query: 693 EMRK-LGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICG 751
            ++  +GY  DT  VL DME + KE+AL+ HSEKLA+A+GL+ L     +R++KNLR+C 
Sbjct: 573 RLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCR 632

Query: 752 DCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           DCH+  K +SKV GREI+VRD  RFHHF DG+CSC D+W
Sbjct: 633 DCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 671



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 189/412 (45%), Gaps = 69/412 (16%)

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC---MQM 172
            YN++I A S +     A+ L+  M +  +KPD+ T+  V+ A      E       + +
Sbjct: 133 LYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKA----CNESSVTWFGLLV 188

Query: 173 HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMM 232
           H  VVKSG    + ++++LI +Y         ++   +GAA+++F+    RD +SW  M+
Sbjct: 189 HTHVVKSGFECDSYIVSSLIHLY---------ANGKDLGAAKQLFNLCSARDVVSWNAMI 239

Query: 233 TGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV-----HREL----KMLMLRIQLDEF 283
            GYVK+  +  AR   D M     ++WN +I+GY      +  L    +M  + ++  E 
Sbjct: 240 DGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEA 299

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
           T  S++SACA+ G    G  +H Y+         E +  V  ALV +Y KCGK++ A  +
Sbjct: 300 TVVSLLSACAHLGALDKGLHLHTYINDNRI----EVNSIVGTALVDMYAKCGKISLATQV 355

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
           FN M  +D+++WN I++     G + EA+ LF+ M+E                       
Sbjct: 356 FNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKE----------------------- 392

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITM 462
                    G +P D  F   +++C+  G ++ G++L   +  S G +  +     +I +
Sbjct: 393 --------AGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDL 444

Query: 463 YARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN-------GARAIEL 506
            AR G +E A  +  TMP   +  +  A++     HGN       G R I L
Sbjct: 445 LARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINL 496



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 143/313 (45%), Gaps = 39/313 (12%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           VH H++ SGF+   +I++ LI +Y     L  A+ LF+     D+V+   +I  Y     
Sbjct: 188 VHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVE 247

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
           +  AR +F++  +  RD + +N MI  Y+     + A+ LF  MR   VKP   T  S+L
Sbjct: 248 MGHARMVFDR--MVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLL 305

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
           SA A +   +K  + +H  +  +   + + V  AL+ +Y KC           +  A +V
Sbjct: 306 SACAHLGALDKG-LHLHTYINDNRIEVNSIVGTALVDMYAKC---------GKISLATQV 355

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLML 276
           F+ M  +D L+W T++ G   +  +  A++    M E  GV  N                
Sbjct: 356 FNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKE-AGVEPN---------------- 398

Query: 277 RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVTLYWKCG 335
                + T+ +++SAC+++G+   G+++   +  +   +P  E        ++ L  + G
Sbjct: 399 -----DITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHY----GCVIDLLARAG 449

Query: 336 KVNEARDIFNQMP 348
            + EA ++   MP
Sbjct: 450 FLEEAMELIGTMP 462



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 152/375 (40%), Gaps = 49/375 (13%)

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA-----GLID 369
           P P  + P N  +++L+  C  +   + +  Q+       +     A +SA       + 
Sbjct: 58  PNPLTNPPSNPQILSLFNPCKTLRHLKQVHAQIITHHNSPFQLSALASLSALSPFPTFLA 117

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
            AK++F  ++      +  +I  L+ +    E L L+  M   G KP    +   I +C 
Sbjct: 118 YAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACN 177

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
                  G  +H  +V SG++      ++LI +YA    + AA  +FN     D VSWNA
Sbjct: 178 ESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNA 237

Query: 490 MIAALGQH-------------------------------GNGARAIELYEQMLKEGILPD 518
           MI    +H                               G    A+ L++QM   G+ P 
Sbjct: 238 MIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPT 297

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVI 578
             T +++LSAC H G + +G  +  T      I          +D+  + GK S A  V 
Sbjct: 298 EATVVSLLSACAHLGALDKG-LHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVF 356

Query: 579 DSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG------TYVLLSNMYA 632
           +++  K     W  ++AG  IHGN    ++ A+QLF+ M   AG      T+V + +  +
Sbjct: 357 NAMESK-DVLAWNTIIAGMAIHGN----VKEAQQLFKEMK-EAGVEPNDITFVAILSACS 410

Query: 633 NLGRWDDAARVRKLM 647
           + G  D+  ++   M
Sbjct: 411 HAGMVDEGQKLLDCM 425


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 250/693 (36%), Positives = 383/693 (55%), Gaps = 55/693 (7%)

Query: 25  PRNPITSSLARS--------VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEI 76
           P + + +  ARS        VHA +I S F     I NRLID+Y K   +  AR LFD +
Sbjct: 21  PFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRM 80

Query: 77  PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
            + +I +  ++I A++ S  +  A  +F K P    D   +N+MI+ +  +     A+  
Sbjct: 81  LERNIFSWNSIICAFTKSGFLDDAVHIFEKMP--QVDQCSWNSMISGFEQHGRFDEALVY 138

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           F  M       + ++F S LSA A + ++ K   Q+H  V +S       + +AL+ +Y 
Sbjct: 139 FAQMHGHGFLVNEYSFGSALSACAGL-QDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYS 197

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           KC    +         A+ VFDEM  R  +SW +++T Y +N  +D A +          
Sbjct: 198 KCGRVEY---------AQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIF-------- 240

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
                         ++M+   ++ DE T  SV+SACA     + G+Q+HA +++ +    
Sbjct: 241 --------------VEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCD---- 282

Query: 317 PEF--SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
            EF   L + NAL+ +Y KC ++NEAR IF+ MP R +VS  +++S Y  A  +  A+ +
Sbjct: 283 -EFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYM 341

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
           F  M  +++++W  +I+G  QNG  EE L LF  ++ E   P  Y F   + +CA L  L
Sbjct: 342 FSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADL 401

Query: 435 ENGRQLHAQLVHSGY------DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
           + GRQ H+ ++  G+      DS +  GN+LI MY +CG VE    VF  M   D VSWN
Sbjct: 402 QLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWN 461

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP 548
           AMI    Q+G G +A+E++ +ML+ G  PD +T + VL AC+HAGL+ EGR YF +M   
Sbjct: 462 AMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQ 521

Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
           +G+ P +DHY   +DLL RAG   EAK++I+ +  +P A +W +LLA C++H NI LG  
Sbjct: 522 HGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHRNIQLGEY 581

Query: 609 AAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVH 668
             ++L ++ P ++G YVLLSNMYA    W +  RVRKLMR RGV K+PGCSWIE+  +++
Sbjct: 582 VVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQPGCSWIEIQGELN 641

Query: 669 VFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVP 701
           VF+V D  H   + +Y  L  ++ +M++ GYVP
Sbjct: 642 VFMVKDKRHARKKEIYMVLRTILQQMKQAGYVP 674



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/392 (30%), Positives = 200/392 (51%), Gaps = 45/392 (11%)

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
           LD   ++ +++ CA S   R   +VHA ++++   P    +  + N L+ +Y KCG V+ 
Sbjct: 17  LDSSPFSKLLNQCARSRSARDTSRVHACIIKS---PFASETF-IQNRLIDVYGKCGCVDV 72

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
           AR +F++M ER++ SWN+I+ A+  +G +D+A  +FE M + +  SW  MISG  Q+G  
Sbjct: 73  ARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRF 132

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
           +E L  F+QM   GF   +Y+F  A+++CAGL  L+ G Q+H+ +  S Y S +  G+AL
Sbjct: 133 DEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSAL 192

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           + MY++CG VE A  VF+ M     VSWN++I    Q+G    A++++ +M+K G+ PD 
Sbjct: 193 VDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDE 252

Query: 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579
           +T  +V+SAC     +KEG++    +                +D+  +  + +EA+ + D
Sbjct: 253 VTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFD 312

Query: 580 SLPFKPSAP------------------------------IWEALLAGCRIHGNIDLGIQA 609
            +P +                                   W AL+AGC  +G      + 
Sbjct: 313 MMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGE----NEE 368

Query: 610 AEQLFQLM------PHHAGTYVLLSNMYANLG 635
           A  LF+L+      P H  T+  L N  ANL 
Sbjct: 369 ALILFRLLKRESVWPTHY-TFGNLLNACANLA 399



 Score =  177 bits (450), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 130/507 (25%), Positives = 232/507 (45%), Gaps = 92/507 (18%)

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           L + ++ D +  D+  F+ +L+  A      +   ++H  ++KS     T + N LI VY
Sbjct: 6   LVKHLKGDLLFLDSSPFSKLLNQCAR-SRSARDTSRVHACIIKSPFASETFIQNRLIDVY 64

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            KC           +  AR++FD M ER+  SW +++  + K+ +LD A    + M +  
Sbjct: 65  GKC---------GCVDVARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVD 115

Query: 256 GVAWNALISGYVH--RELKMLMLRIQL-------DEFTYTSVISACANSGLFRLGKQVHA 306
             +WN++ISG+    R  + L+   Q+       +E+++ S +SACA     +LG Q+H+
Sbjct: 116 QCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHS 175

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366
            + R+         + + +ALV +Y KCG+V  A+ +F++M  R  VSWN++++ Y   G
Sbjct: 176 LVYRSNYLS----DVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNG 231

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
            +DEA                               LK+F +M   G +P +   A  ++
Sbjct: 232 PVDEA-------------------------------LKIFVEMIKCGVEPDEVTLASVVS 260

Query: 427 SCAGLGALENGRQLHAQLVHSG-YDSSLSAGNALITMYARCGVVEAANCVFNTMP----- 480
           +CA + A++ G+Q+HA++V    + + L  GNAL+ MYA+C  +  A  +F+ MP     
Sbjct: 261 ACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVV 320

Query: 481 -----------------------NV---DSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
                                  N+   D ++WNA+IA   Q+G    A+ L+  + +E 
Sbjct: 321 SETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRES 380

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRR-YFETMHGPYGIPPGEDHYA----RFIDLLCRAG 569
           + P   TF  +L+AC +   ++ GR+ +   +   +    GED         ID+  + G
Sbjct: 381 VWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCG 440

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAG 596
                  V   +  K     W A++ G
Sbjct: 441 SVENGCRVFQHMLEKDCVS-WNAMIVG 466



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 136/518 (26%), Positives = 229/518 (44%), Gaps = 96/518 (18%)

Query: 12  LANRYA--SQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYA 69
           L N Y+  S L  C     +   L   +H+ +  S +    ++ + L+D+Y K  ++ YA
Sbjct: 148 LVNEYSFGSALSACAGLQDL--KLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYA 205

Query: 70  RTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSN 129
           +++FDE                                 + +R  V +N++IT Y  N  
Sbjct: 206 QSVFDE---------------------------------MTVRSRVSWNSLITCYEQNGP 232

Query: 130 GHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL- 188
              A+++F +M +  V+PD  T  SV+SA A I    K+  Q+H  VVK        +L 
Sbjct: 233 VDEALKIFVEMIKCGVEPDEVTLASVVSACATI-SAIKEGQQIHARVVKCDEFRNDLILG 291

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           NAL+ +Y KC         + +  AR +FD MP R  +S T+M++GY K   +  AR   
Sbjct: 292 NALLDMYAKC---------NRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMF 342

Query: 249 DGMSENVGVAWNALISGYVH---RELKMLMLRIQLDE------FTYTSVISACANSGLFR 299
             M     + WNALI+G       E  +++ R+   E      +T+ ++++ACAN    +
Sbjct: 343 SNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQ 402

Query: 300 LGKQVHAYLLRT--EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA 357
           LG+Q H+++L+     +   +  + V N+L+ +Y KCG V     +F  M E+D VSWNA
Sbjct: 403 LGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNA 462

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
           ++  Y                               AQNG+G + L++F +M   G  P 
Sbjct: 463 MIVGY-------------------------------AQNGFGNKALEVFCKMLESGEAPD 491

Query: 418 DYAFAGAITSCAGLGALENGR-QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
                G + +C+  G L+ GR    +     G          ++ +  R G +E A  + 
Sbjct: 492 HVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLI 551

Query: 477 NTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKE 513
             M    D++ W +++AA   H    R I+L E ++K+
Sbjct: 552 EEMSMQPDAIVWGSLLAACKVH----RNIQLGEYVVKK 585


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 259/729 (35%), Positives = 384/729 (52%), Gaps = 68/729 (9%)

Query: 62  KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMI 121
           K  KL + R L   +   + +    L +  + S+N +    +F+KTP    +T  YN MI
Sbjct: 18  KHAKLAHCRLLRLNLHHDNDLLSIILRSTINFSNNAQYPILVFHKTPTN-SNTFLYNTMI 76

Query: 122 TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGT 181
                    + A+ L+  M +  + PD+FTF+ VL A A +       M +H  V K+G 
Sbjct: 77  RGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVM-IHSLVFKTGF 135

Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
                V   ++  Y KC           +  A +VFD+M  ++ +SWT M+ G ++    
Sbjct: 136 DCDVFVKTNVVCFYSKC---------GFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKF 186

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
             A +   G+          L SG            ++ D F    V+ ACA  G    G
Sbjct: 187 REAVDLFRGL----------LESG------------LRPDGFVIVRVLRACARLGDLESG 224

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
           +    ++ R   +     ++ V  +LV +Y KCG                          
Sbjct: 225 R----WIDRCMRECGLSRNVFVATSLVDMYTKCGS------------------------- 255

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
                 ++EA+ +F+ M E++++ W+ MI G A NG   E ++LF +MR    +P  YA 
Sbjct: 256 ------MEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAM 309

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
            GA++SCA LGALE G      + +  + S+   G +LI  YA+CG +E A  V+  M  
Sbjct: 310 VGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKE 369

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY 541
            D V +NA+I+ L  +G    A  ++ QM K GI P+  TF+ +L  C HAGLV +GR Y
Sbjct: 370 KDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHY 429

Query: 542 FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
           F +M   + + P  +HY   +DLL RAG   EA ++I  +P K +  +W +LL GCR+H 
Sbjct: 430 FNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHR 489

Query: 602 NIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWI 661
              L     +QL +L P ++G YVLLSN+Y+   RWD+A ++R  + ++G++K PG SW+
Sbjct: 490 ETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWV 549

Query: 662 EVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALST 721
           EVD  VH FLV DT+HP +Q +Y+ LE L  ++++ GY P T+FVL D+E ++KE+ L  
Sbjct: 550 EVDGVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTEFVLFDVEEEEKEHFLGC 609

Query: 722 HSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRD 781
           HSEKLAVAF L+       +RV+KNLR+CGDCH A K +SKV GREIV+RD  RFH F D
Sbjct: 610 HSEKLAVAFALISTGAKYVIRVVKNLRVCGDCHEAIKHISKVTGREIVIRDNNRFHCFSD 669

Query: 782 GKCSCGDYW 790
           G CSC DYW
Sbjct: 670 GACSCRDYW 678



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 140/332 (42%), Gaps = 54/332 (16%)

Query: 41  MISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQP-----DIVARTTLIAAYSASD 95
           ++ SG +P   +I R++   C  L  + +    D   +      ++   T+L+  Y+   
Sbjct: 196 LLESGLRPDGFVIVRVLRA-CARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTKCG 254

Query: 96  NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV 155
           +++ AR +F+   +  +D V ++AMI  Y+ N     AIELF +MR+ +V+PD +     
Sbjct: 255 SMEEARFVFD--GMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGA 312

Query: 156 LSALALIVEEE-----KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           LS+ A +   E     K  M     +     G       +LI  Y KC S         M
Sbjct: 313 LSSCASLGALELGNWAKGLMNYEEFLSNPVLG------TSLIDFYAKCGS---------M 357

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
             A  V+  M E+D + +  +++G                M   VG A+           
Sbjct: 358 EEALGVYKMMKEKDRVVFNAVISGL--------------AMYGQVGAAFGVFG------- 396

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
            +M    I  +E T+  ++  C ++GL   G+  +   +  +   TP  ++     +V L
Sbjct: 397 -QMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRH-YFNSMSHDFSVTP--TIEHYGCMVDL 452

Query: 331 YWKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
             + G ++EA ++   MP + +++ W ++L  
Sbjct: 453 LARAGFLDEAHNLIKGMPMKANVIVWGSLLGG 484



 Score = 43.1 bits (100), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 89/234 (38%), Gaps = 15/234 (6%)

Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC-----VFNTMP-NV 482
           +GL  L++ +  H +L+      +L   N L+++  R  +  + N      VF+  P N 
Sbjct: 12  SGLKCLKHAKLAHCRLLRL----NLHHDNDLLSIILRSTINFSNNAQYPILVFHKTPTNS 67

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
           ++  +N MI  +        A+ LY  M K  I+PD  TF  VL AC    L   G    
Sbjct: 68  NTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLG-VMI 126

Query: 543 ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
            ++    G           +    + G   +A  V D +  K     W  ++ GC   G 
Sbjct: 127 HSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVS-WTGMICGCIEFGK 185

Query: 603 IDLGIQAAEQLFQ--LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKK 654
               +     L +  L P      V +    A LG  +    + + MR+ G+ +
Sbjct: 186 FREAVDLFRGLLESGLRP-DGFVIVRVLRACARLGDLESGRWIDRCMRECGLSR 238


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 256/716 (35%), Positives = 382/716 (53%), Gaps = 59/716 (8%)

Query: 84  RTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD 143
           +  L+  Y     ++ AR +F+K  ++ RD V +  MI  Y+     + ++ LF  MR +
Sbjct: 196 QMALVDMYVKCREIEDARFLFDK--MQERDLVTWTVMIGGYAECGKANESLVLFEKMREE 253

Query: 144 DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
            V PD     +V+ A A +    K                       +I  Y++      
Sbjct: 254 GVVPDKVAMVTVVFACAKLGAMHKA---------------------RIIDDYIQ------ 286

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
                     R+ F    + D +  T M+  Y K   +++ARE  D M E   ++W+A+I
Sbjct: 287 ----------RKKF----QLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMI 332

Query: 264 SGYVHR-------ELKMLMLRIQL--DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
           + Y +        +L  +ML   +  D+ T  S++ AC N       +QVHA   +    
Sbjct: 333 AAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHA---QASVH 389

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
              + +L V N LV  Y     +++A  +F+ M  RD VSW+ ++  +   G   +  + 
Sbjct: 390 GMLQ-NLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVG---DYMNC 445

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
           F   RE            L   G   E L LF +MR EG  P   A    + +CA LGA+
Sbjct: 446 FGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAM 505

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
              R +   +    +   +  G A+I M+A+CG VE+A  +F+ M   + +SW+AMIAA 
Sbjct: 506 HKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAY 565

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
           G HG G +A++L+  ML+ GILP++IT +++L AC+HAGLV+EG R+F  M   Y +   
Sbjct: 566 GYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRAD 625

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
             HY   +DLL RAG+  EA  +I+S+  +    +W A L  CR H ++ L  +AA  L 
Sbjct: 626 VKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLL 685

Query: 615 QLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDD 674
           +L P + G Y+LLSN+YAN GRW+D A+ R LM  R +KK PG +WIEVDNK H F V D
Sbjct: 686 ELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGD 745

Query: 675 TAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMK 734
           T HP ++ +Y+ L+ L  ++  +GYVPDT FVLHD++ + K   L +HSEKLA+AFGL+ 
Sbjct: 746 TTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIA 805

Query: 735 LPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            P    +R++KNLR+CGDCH   K +S + GR I+VRD  RFHHF++G CSCGDYW
Sbjct: 806 TPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 861



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 129/554 (23%), Positives = 227/554 (40%), Gaps = 126/554 (22%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           +IV    LI  YS    +  A  +F+   + +RD+V ++ M+  ++   +       FR+
Sbjct: 112 NIVVANKLIYFYSYYRALDDAYGLFD--GMCVRDSVSWSVMVGGFAKVGDYINCFGTFRE 169

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           + R   +PDN+T   V+ A       + + +QM                 AL+ +YVKC 
Sbjct: 170 LIRCGARPDNYTLPFVIRAC-----RDLKNLQM-----------------ALVDMYVKCR 207

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                     +  AR +FD+M ERD ++WT M+ GY +    + +    + M E   V  
Sbjct: 208 E---------IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVP- 257

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                                D+    +V+ ACA  G     + +  Y+ R +     + 
Sbjct: 258 ---------------------DKVAMVTVVFACAKLGAMHKARIIDDYIQRKKF----QL 292

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
            + +  A++ +Y KCG V  AR+IF++M E++++SW+A+++AY                 
Sbjct: 293 DVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAY----------------- 335

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
                           +G G + L LF  M   G  P     A  + +C     L   RQ
Sbjct: 336 --------------GYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQ 381

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           +HAQ    G   +L   N L+  Y+    ++ A  +F+ M   DSVSW+ M+    + G+
Sbjct: 382 VHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGD 441

Query: 500 --------------GAR--------------AIELYEQMLKEGILPDRITFLTVLSACNH 531
                         GAR              ++ L+++M +EG++PD++  +TV+ AC  
Sbjct: 442 YMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAK 501

Query: 532 AGLVKEGRR---YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
            G + + R    Y +       +  G       ID+  + G    A+++ D +  K +  
Sbjct: 502 LGAMHKARTIDDYIQRKKFQLDVILG----TAMIDMHAKCGCVESAREIFDRMEEK-NVI 556

Query: 589 IWEALLAGCRIHGN 602
            W A++A    HG 
Sbjct: 557 SWSAMIAAYGYHGQ 570



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 169/365 (46%), Gaps = 37/365 (10%)

Query: 55  RLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDT 114
           R+ID Y +  K            Q D++  T +I  Y+    V+ ARE+F++  ++ ++ 
Sbjct: 279 RIIDDYIQRKKF-----------QLDVILGTAMIDMYAKCGCVESAREIFDR--MEEKNV 325

Query: 115 VFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHC 174
           + ++AMI AY ++  G  A++LFR M    + PD  T  S+L A  +      Q  Q+H 
Sbjct: 326 ISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYA-CINCRNLTQVRQVHA 384

Query: 175 TVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTG 234
                G      V N L+  Y         S    +  A  +FD M  RD +SW+ M+ G
Sbjct: 385 QASVHGMLQNLIVANKLVHFY---------SYYRALDDAYGLFDGMCVRDSVSWSVMVGG 435

Query: 235 YVK-NDYLDAAREFLD-----GMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSV 288
           + K  DY++    F +        +N  + +    +  +    KM    +  D+    +V
Sbjct: 436 FAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTV 495

Query: 289 ISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
           + ACA  G     + +  Y+ R +     +  + +  A++ ++ KCG V  AR+IF++M 
Sbjct: 496 VFACAKLGAMHKARTIDDYIQRKKF----QLDVILGTAMIDMHAKCGCVESAREIFDRME 551

Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL----AQNGYGEEGLK 404
           E++++SW+A+++AY   G   +A  LF  M    +L   + +  L    +  G  EEGL+
Sbjct: 552 EKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLR 611

Query: 405 LFSQM 409
            FS M
Sbjct: 612 FFSLM 616



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 129/291 (44%), Gaps = 37/291 (12%)

Query: 334 CGKVNEARDIFNQMPE----RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           C  + + R +  Q        ++V  N ++  Y     +D+A  LF+ M  R+ +SW+VM
Sbjct: 91  CRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVM 150

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           + G A+ G        F ++   G +P +Y     I +C  L  L+              
Sbjct: 151 VGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQM------------- 197

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
                   AL+ MY +C  +E A  +F+ M   D V+W  MI    + G    ++ L+E+
Sbjct: 198 --------ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEK 249

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGR---RYFETMHGPYGIPPGEDHYARFIDLLC 566
           M +EG++PD++  +TV+ AC   G + + R    Y +       +  G       ID+  
Sbjct: 250 MREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILG----TAMIDMYA 305

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           + G    A+++ D +  K +   W A++A    HG    G +A + LF++M
Sbjct: 306 KCGCVESAREIFDRMEEK-NVISWSAMIAAYGYHGQ---GRKALD-LFRMM 351



 Score = 59.7 bits (143), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 164/412 (39%), Gaps = 67/412 (16%)

Query: 17  ASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEI 76
           AS L  C     +T    R VHA     G      + N+L+  Y     L  A  LFD +
Sbjct: 364 ASLLYACINCRNLTQ--VRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGM 421

Query: 77  PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYS--HNSNGHAAI 134
              D V+ + ++  ++   +       F       R+ +   A    Y+     N + ++
Sbjct: 422 CVRDSVSWSVMVGGFAKVGDYMNCFGTF-------RELIRCGARPDNYTLPFCGNANESL 474

Query: 135 ELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
            LF  MR + V PD     +V+ A A +    K    +   + +    L   +  A+I +
Sbjct: 475 VLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKA-RTIDDYIQRKKFQLDVILGTAMIDM 533

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           + KC           + +AR +FD M E++ +SW+ M+  Y    Y    R+ LD     
Sbjct: 534 HAKC---------GCVESAREIFDRMEEKNVISWSAMIAAY---GYHGQGRKALD----- 576

Query: 255 VGVAWNALISGYVHRELKMLMLR--IQLDEFTYTSVISACANSGLFRLGKQVHA-----Y 307
                           L  +MLR  I  ++ T  S++ AC+++GL   G +  +     Y
Sbjct: 577 ----------------LFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDY 620

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA---YV 363
            +R + K            +V L  + G+++EA  +   M  E+D   W A L A   + 
Sbjct: 621 SVRADVKHY--------TCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHK 672

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK---LFSQMRLE 412
              L ++A +    ++ +N   + ++ +  A  G  E+  K   L SQ RL+
Sbjct: 673 DVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLK 724


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/627 (37%), Positives = 355/627 (56%), Gaps = 49/627 (7%)

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           MH  ++K G         AL+S Y K        SR L+  A  +FDE P RD   ++++
Sbjct: 25  MHARILKEGLAHHPPNPAALVSAYAK--------SR-LLPDALHLFDETPRRDIYIYSSL 75

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQL-------DEFT 284
           +T                             +S     EL + +LR  L       D F 
Sbjct: 76  LTA----------------------------VSHSASPELALPILRCMLSADALHPDHFV 107

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
            +SV S  A     RLG+Q+HA+ + +           V ++LV +Y KCG  ++ R +F
Sbjct: 108 ISSVASVFARLRSRRLGRQLHAHFVVSPYNGDD----VVKSSLVDMYCKCGSPDDGRKVF 163

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           + M  ++ V W A++S Y S G  +EA  LF +M  RNL +WT +ISGL   G     ++
Sbjct: 164 DSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVE 223

Query: 405 LFSQMRLEGFKPCD-YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
           LF +MR +G +  D +  +  I   A L A   GRQLH   +  G+ S++  GNALI MY
Sbjct: 224 LFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMY 283

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
           ++C  + +A  VF  +   D +SW  M+    QHG    A+ LY++M+  G  P+ +TF+
Sbjct: 284 SKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFV 343

Query: 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF 583
            ++ AC+HAGLV++GR+ FE+M   YGI P   HY  ++DLL R+G   EA++++ ++P+
Sbjct: 344 GLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPY 403

Query: 584 KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARV 643
           +P    W ALL+ C  + + ++ I+ +++L +L P  + TY+LLSN+YA  G+WD  A+V
Sbjct: 404 EPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKV 463

Query: 644 RKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDT 703
           RK M    ++KEPG SWIE   +  +F   +      + +  +LE++VLEMRK GYVPDT
Sbjct: 464 RKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIMVFLEEMVLEMRKRGYVPDT 523

Query: 704 KFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKV 763
             V+HD+E  +KE+ L  HSE+LAVAFGL+K P G+ +RV+KNLR+C DCH   K +S++
Sbjct: 524 SSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPGSVIRVVKNLRVCVDCHTVMKLISEI 583

Query: 764 VGREIVVRDGKRFHHFRDGKCSCGDYW 790
             R+IVVRD  RFHHF  GKCSC ++W
Sbjct: 584 THRKIVVRDSSRFHHFEGGKCSCSEFW 610



 Score =  166 bits (421), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 126/449 (28%), Positives = 210/449 (46%), Gaps = 65/449 (14%)

Query: 77  PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
           P P       L++AY+ S  +  A  +F++TP   RD   Y++++TA SH+++   A+ +
Sbjct: 39  PNP-----AALVSAYAKSRLLPDALHLFDETP--RRDIYIYSSLLTAVSHSASPELALPI 91

Query: 137 FRDM-RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
            R M   D + PD+F  +SV S  A +    +   Q+H   V S       V ++L+ +Y
Sbjct: 92  LRCMLSADALHPDHFVISSVASVFARL-RSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMY 150

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            KC  SP           R+VFD M  ++ + WT +++GY  N   + A +    M    
Sbjct: 151 CKC-GSP--------DDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRN 201

Query: 256 GVAWNALISGYVHR-------ELKMLMLR--IQLDE-FTYTSVISACANSGLFRLGKQVH 305
             AW ALISG V+        EL + M R  +++D+ F  + VI   A+   F LG+Q+H
Sbjct: 202 LFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLH 261

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365
              +R         ++ V NAL+ +Y KC  +  AR++F  +  RD++SW          
Sbjct: 262 GSTMRLGFLS----NMIVGNALIDMYSKCSDILSAREVFEGITFRDVISW---------- 307

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425
                                T M+ G AQ+G  EE L L+ +M L G KP +  F G I
Sbjct: 308 ---------------------TTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLI 346

Query: 426 TSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVD 483
            +C+  G ++ GRQL   + +  G    L      + + +R G +  A  +  TMP   D
Sbjct: 347 YACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPD 406

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLK 512
             +W A+++A  ++ +    I + +++L+
Sbjct: 407 EATWGALLSACTKYKDAEMCIRISDKLLE 435



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 171/369 (46%), Gaps = 40/369 (10%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R +HAH + S +   + + + L+D+YCK       R +FD +   + V  T L++ Y+
Sbjct: 123 LGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYA 182

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
           ++   + A ++F   P   R+   + A+I+   +      A+ELF +MRRD V+ D+   
Sbjct: 183 SNGRSEEALQLFRSMP--GRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFV 240

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            S++   +  +       Q+H + ++ G      V NALI +Y KC         S + +
Sbjct: 241 LSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKC---------SDILS 291

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           AR VF+ +  RD +SWTTM+ G  ++   + A    D                      +
Sbjct: 292 AREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYD----------------------R 329

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           M++   + +E T+  +I AC+++GL + G+Q+    ++ E   TP   L      + L  
Sbjct: 330 MVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFES-MKNEYGITPR--LQHYTCYLDLLS 386

Query: 333 KCGKVNEARDIFNQMP-ERDLVSWNAILSA---YVSAGLIDEAKSLFEAMRERNLLSWTV 388
           + G + EA ++   MP E D  +W A+LSA   Y  A +          +R ++  ++ +
Sbjct: 387 RSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYIL 446

Query: 389 MISGLAQNG 397
           + +  A NG
Sbjct: 447 LSNVYAVNG 455


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 284/855 (33%), Positives = 420/855 (49%), Gaps = 157/855 (18%)

Query: 18  SQLQLCDPRNPITSSL--ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           ++L  C  R   T SL   +  H HMI + FKP   ++N L+ +YCK  +   A+ LFD 
Sbjct: 23  TKLVQCSTR---TGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKLFDR 79

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P+                                 R+ V +N++I+ Y+     H  + 
Sbjct: 80  MPK---------------------------------RNVVSWNSLISGYTQMGFYHEVMN 106

Query: 136 LFRDMRRDDVKPDNFTFTSVLSAL-------------ALI--------VEEEKQCMQMHC 174
           LF++ R  D++ D FTF++ LS               ALI        V      + M+C
Sbjct: 107 LFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYC 166

Query: 175 T---------VVKSGTGLFTSVLNALISVYV----------------------------- 196
                     V +S   L +   N+LI+ YV                             
Sbjct: 167 KCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGS 226

Query: 197 --KCVSSPFVSS----RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDG 250
             K   S F SS    + L G A ++  ++   D +  T ++  Y K   L+ A +    
Sbjct: 227 ALKACGSNFSSSIECGKMLHGCAVKLGLDL---DVVVGTALLDTYAKIGDLEDATKIFKL 283

Query: 251 MSENVGVAWNALISGYVHRE--------------LKMLMLRIQLDEFTYTSVISACANSG 296
           M +   V +NA+I+G++  E               +M    ++  EFT++S++ AC+   
Sbjct: 284 MPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIE 343

Query: 297 LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWN 356
            F  GKQ+HA                                    IF    + D    N
Sbjct: 344 AFECGKQIHA-----------------------------------QIFKYNLQSDEFIGN 368

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
           A++  Y  +G I++    F +  + +++SWT +I G  QNG  E GL LF ++   G KP
Sbjct: 369 ALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKP 428

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
            ++  +  +++CA L A+++G Q+HA  + +G  +     N+ I MYA+CG +++AN  F
Sbjct: 429 DEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTF 488

Query: 477 NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536
               N D VSW+ MI++  QHG    A++L+E M   GI P+ ITFL VL AC+H GLV+
Sbjct: 489 KETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVE 548

Query: 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           EG RYFE M   +GI P   H A  +DLL RAG+ +EA+  I    F+    +W +LL+ 
Sbjct: 549 EGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSA 608

Query: 597 CRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEP 656
           CR+H   D G + AE++ +L P  A +YVLL N+Y + G    A  +R LM+DRGVKKEP
Sbjct: 609 CRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEP 668

Query: 657 GCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKE 716
           G SWIEV N VH F+  D +HP +Q +Y  LE+++ E++KL Y+ D K V    E   K+
Sbjct: 669 GLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYI-DEKLVSDASEPKHKD 727

Query: 717 YAL-STHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKR 775
            ++ S HSEKLAV FG++ LP  A VRV+KNLR C  CH   K  S++  REI++RD  R
Sbjct: 728 NSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLENREIILRDPIR 787

Query: 776 FHHFRDGKCSCGDYW 790
           FH FRDG CSCGDYW
Sbjct: 788 FHRFRDGSCSCGDYW 802



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 154/326 (47%), Gaps = 45/326 (13%)

Query: 276 LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG 335
           L + LD  TYT ++     +G    GK  H ++++T  KP     L + N L+ +Y KCG
Sbjct: 13  LGLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPC----LFLLNNLLYMYCKCG 68

Query: 336 KVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQ 395
           + + A+ +F++MP+R++VSWN+++S Y   G   E  +LF+  R                
Sbjct: 69  ETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEAR---------------- 112

Query: 396 NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSA 455
                      S +RL+ F      F+ A++ C     L  GR +HA +  SG    +  
Sbjct: 113 ----------MSDLRLDKF-----TFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLL 157

Query: 456 GNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI 515
            N+LI MY +CG ++ A  VF +   +DSVSWN++IA   + G+    + L  +ML+ G+
Sbjct: 158 TNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGL 217

Query: 516 LPDRITFLTVLSAC--NHAGLVKEGRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGK 570
             +     + L AC  N +  ++ G+     +HG     G+          +D   + G 
Sbjct: 218 NLNSYALGSALKACGSNFSSSIECGK----MLHGCAVKLGLDLDVVVGTALLDTYAKIGD 273

Query: 571 FSEAKDVIDSLPFKPSAPIWEALLAG 596
             +A  +   +P  P+  ++ A++AG
Sbjct: 274 LEDATKIFKLMP-DPNVVMYNAMIAG 298



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 178/414 (42%), Gaps = 79/414 (19%)

Query: 14  NRYA--SQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYART 71
           N YA  S L+ C      +    + +H   +  G      +   L+D Y K   L  A  
Sbjct: 220 NSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATK 279

Query: 72  LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           +F  +P P++V    +IA +   +   +A E  N+                         
Sbjct: 280 IFKLMPDPNVVMYNAMIAGFLQMET--MADEFANE------------------------- 312

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC-MQMHCTVVKSGTGLFTSVLNA 190
            A+ LF +M+   +KP  FTF+S+L A + I  E  +C  Q+H  + K        + NA
Sbjct: 313 -AMYLFFEMQSRGMKPSEFTFSSILKACSTI--EAFECGKQIHAQIFKYNLQSDEFIGNA 369

Query: 191 LISVYVKCVSSPFVSSRSLMGAAR---RVFDEMPERDELSWTTMMTGYVKNDYLDAAREF 247
           L+ +Y            SL G+     + F   P+ D +SWT+++ G+V+N   +     
Sbjct: 370 LVELY------------SLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTL 417

Query: 248 LDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY 307
              +          L SG             + DEFT + ++SACAN    + G+Q+HAY
Sbjct: 418 FHEL----------LFSGR------------KPDEFTISIMLSACANLAAVKSGEQIHAY 455

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367
            ++T       F++ + N+ + +Y KCG ++ A   F +    D+VSW+ ++S+    G 
Sbjct: 456 AIKT---GIGNFTI-IQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGC 511

Query: 368 IDEAKSLFEAMRER----NLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKP 416
             EA  LFE M+      N +++  ++   +  G  EEGL+ F  M+ + G  P
Sbjct: 512 AKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITP 565


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/646 (34%), Positives = 372/646 (57%), Gaps = 56/646 (8%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           Q+H  V++SG      V  AL+    KC ++P  S+      A +VF  +P  +   W  
Sbjct: 51  QLHALVLRSGHFQDHYVSGALL----KCYANPHFSNFDF---ALKVFSSIPNPNVFIWNI 103

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++ G ++N+ L  A  F   M                       ++  + ++FTY ++  
Sbjct: 104 VIKGCLENNKLFKAIYFYGRM-----------------------VIDARPNKFTYPTLFK 140

Query: 291 ACANSGLFRLGKQVHAYLLR-----------------------TEAKP---TPEFSLPVN 324
           AC+ +   + G+Q+H ++++                        +A+    + E  +   
Sbjct: 141 ACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCW 200

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
           N ++  Y KCG +  A+ +F QMP +++ SWN +++     G + +A+ LF+ M ER+ +
Sbjct: 201 NTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEI 260

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
           SW+ M+ G    G  +E L++F QM+ E  +P  +  +  + +C+ +GA++ GR +HA L
Sbjct: 261 SWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYL 320

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
             +        G AL+ MYA+CG ++    VF  M   +  +WNAMI  L  HG    A+
Sbjct: 321 KRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDAL 380

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
           EL+ ++ +  + P+ IT + VL+AC HAG V +G R F+TM   YG+ P  +HY   +DL
Sbjct: 381 ELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDL 440

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624
           L R+G FSEA+D+I+S+P KP+A +W ALL  CRIHGN DL  +  + L +L P ++G Y
Sbjct: 441 LGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRY 500

Query: 625 VLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVY 684
           VLLSN+YA +GR+DD +++RKLM++RG+K  PG S ++++  VH F + D +HP+ + +Y
Sbjct: 501 VLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIY 560

Query: 685 KYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVL 744
           + L+ +   ++  G+ PDT  VL D++ ++KE A++ HSEKLA+AFGL+    G  + ++
Sbjct: 561 RKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIV 620

Query: 745 KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KNLR+C DCH+A K +S++  REI+VRD  R+HHF++G CSC D+W
Sbjct: 621 KNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 125/514 (24%), Positives = 220/514 (42%), Gaps = 104/514 (20%)

Query: 20  LQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKS--LKLVYARTLFDEIP 77
           L+L D ++  +      +HA ++ SG     ++   L+  Y         +A  +F  IP
Sbjct: 35  LKLFDSKSITSLQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIP 94

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
            P++     +I      +N KL + ++           FY  M+                
Sbjct: 95  NPNVFIWNIVIKG--CLENNKLFKAIY-----------FYGRMVI--------------- 126

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY-- 195
                 D +P+ FT+ ++  A + + +  ++  Q+H  VVK G G    + +A I +Y  
Sbjct: 127 ------DARPNKFTYPTLFKACS-VAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYAS 179

Query: 196 ---VKCVSSPFVSSRS----------------LMGAARRVFDEMPERDELSWTTMMTGYV 236
              ++     F S  S                ++ AA+ +F +MP ++  SW  M+ G  
Sbjct: 180 FGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLA 239

Query: 237 KNDYLDAAREFLDGMSENVGVAWNALISGYV----HRELKMLMLRIQLDE-----FTYTS 287
           K   L  AR+  D MSE   ++W++++ GY+    ++E   +  ++Q +E     F  +S
Sbjct: 240 KGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSS 299

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           V++AC+N G    G+ VHAYL R   K        +  AL+ +Y KCG+++   ++F +M
Sbjct: 300 VLAACSNIGAIDQGRWVHAYLKRNSIK----LDAVLGTALLDMYAKCGRLDMGWEVFEEM 355

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
            ER++ +WNA                               MI GLA +G  E+ L+LFS
Sbjct: 356 KEREIFTWNA-------------------------------MIGGLAIHGRAEDALELFS 384

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENG-RQLHAQLVHSGYDSSLSAGNALITMYARC 466
           +++    KP      G +T+CA  G ++ G R         G D  L     ++ +  R 
Sbjct: 385 KLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRS 444

Query: 467 GVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
           G+   A  + N+MP   ++  W A++ A   HGN
Sbjct: 445 GLFSEAEDLINSMPMKPNAAVWGALLGACRIHGN 478



 Score = 99.8 bits (247), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 166/366 (45%), Gaps = 41/366 (11%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
           N +ID Y K   L  A+ LF ++P  +I +   +I   +   N+  AR++F++  +  RD
Sbjct: 201 NTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDE--MSERD 258

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMH 173
            + +++M+  Y        A+E+F+ M+R++ +P  F  +SVL+A + I   + Q   +H
Sbjct: 259 EISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAID-QGRWVH 317

Query: 174 CTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMT 233
             + ++   L   +  AL+ +Y KC        R  MG    VF+EM ER+  +W  M+ 
Sbjct: 318 AYLKRNSIKLDAVLGTALLDMYAKC-------GRLDMGW--EVFEEMKEREIFTWNAMIG 368

Query: 234 GYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACA 293
           G   +   + A E    + E                       R++ +  T   V++ACA
Sbjct: 369 GLAIHGRAEDALELFSKLQEG----------------------RMKPNGITLVGVLTACA 406

Query: 294 NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER-DL 352
           ++G    G ++    +R      PE  L     +V L  + G  +EA D+ N MP + + 
Sbjct: 407 HAGFVDKGLRIFQ-TMREFYGVDPE--LEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNA 463

Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRE---RNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
             W A+L A    G  D A+ + + + E   +N   + ++ +  A+ G  ++  K+   M
Sbjct: 464 AVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLM 523

Query: 410 RLEGFK 415
           +  G K
Sbjct: 524 KNRGIK 529


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 243/711 (34%), Positives = 387/711 (54%), Gaps = 69/711 (9%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + D+    +L+  YS    + +A ++F   P+K  D   +NAMI+ +  N N   A+ + 
Sbjct: 153 EDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVK--DVGSWNAMISGFCQNGNAAGALGVL 210

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
             M+ + VK D  T  S+L   A   ++    + +H  V+K G      V NALI++Y  
Sbjct: 211 NRMKGEGVKMDTITVASILPVCAQ-SDDVINGVLIHLHVLKHGLDSDVFVSNALINMY-- 267

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
                  S    +  A+ VFD+M  RD +SW +++  Y +N+    A  F  GM      
Sbjct: 268 -------SKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQ----- 315

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                + G            I+ D  T  S+ S  +     R+ + +  +++R E     
Sbjct: 316 -----LGG------------IRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRRE----- 353

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
                         W                ++D+V  NA+++ Y   G ++ A ++F+ 
Sbjct: 354 --------------WL---------------DKDVVIGNALVNMYAKLGYMNCAHTVFDQ 384

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR-LEGFKPCDYAFAGAITSCAGLGALEN 436
           +  ++ +SW  +++G  QNG   E +  ++ M       P    +   I + + +GAL+ 
Sbjct: 385 LPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQ 444

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           G ++HA+L+ +     +     LI +Y +CG +E A  +F  +P   SV WNA+IA+LG 
Sbjct: 445 GMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGI 504

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
           HG G  A++L++ ML E +  D ITF+++LSAC+H+GLV EG++ F+ M   YGI P   
Sbjct: 505 HGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLK 564

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           HY   +DLL RAG   +A +++ ++P +P A IW ALL+ C+I+GN +LG  A+++L ++
Sbjct: 565 HYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEV 624

Query: 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTA 676
              + G YVLLSN+YAN  +W+   +VR L RDRG++K PG S + V +K  VF   +  
Sbjct: 625 DSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQT 684

Query: 677 HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLP 736
           HP+   +YK L+ L  +M+ LGYVPD  FV  D+E D+KE  L++HSE+LA+AFG++  P
Sbjct: 685 HPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTP 744

Query: 737 GGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCG 787
             + +R+ KNLR+CGDCHNA K++S++  REIVVRD  RFHHF+DG CSC 
Sbjct: 745 PRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDGICSCA 795



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 154/595 (25%), Positives = 275/595 (46%), Gaps = 95/595 (15%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAI----E 135
           +IV  T LI  Y    ++ L+R  F+   +  ++   +N++I+AY      H A+    +
Sbjct: 53  NIVLSTKLINLYVTHGDISLSRSTFDY--IHKKNIFSWNSIISAYVRFGKYHEAMNCVNQ 110

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LF       ++PD +TF  +L A   +V+ +K    +HC V K G      V  +L+ +Y
Sbjct: 111 LFSMCGGGHLRPDFYTFPPILKACVSLVDGKK----VHCCVFKMGFEDDVFVAASLVHLY 166

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
                    S   ++  A +VF +MP +D  SW  M++G+ +N                 
Sbjct: 167 ---------SRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQN----------------- 200

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           G A  AL  G ++R   M    +++D  T  S++  CA S     G  +H ++L    K 
Sbjct: 201 GNAAGAL--GVLNR---MKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVL----KH 251

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
             +  + V+NAL+ +Y K G++ +A+ +F+QM  RDLVSWN+I++AY             
Sbjct: 252 GLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAY------------- 298

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC-AGLGAL 434
                              QN      L+ F  M+L G +P D     ++TS  + L   
Sbjct: 299 ------------------EQNNDPSTALRFFKGMQLGGIRP-DLLTVVSLTSIFSQLSDQ 339

Query: 435 ENGRQLHAQLVHSGY-DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
              R +   ++   + D  +  GNAL+ MYA+ G +  A+ VF+ +P  D++SWN ++  
Sbjct: 340 RISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTG 399

Query: 494 LGQHGNGARAIELYEQMLK-EGILPDRITFLTVLSACNHAGLVKEGRRYFETM--HGPYG 550
             Q+G  + AI+ Y  M +    +P++ T+++++ A +H G +++G +    +  +  Y 
Sbjct: 400 YTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLY- 458

Query: 551 IPPGEDHYAR--FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
                D +     IDL  + G+  +A  +   +P   S P W A++A   IHG  +  +Q
Sbjct: 459 ----LDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVP-WNAIIASLGIHGRGEEALQ 513

Query: 609 A-AEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM-RDRGVK---KEPGC 658
              + L + +     T+V L +  ++ G  D+  +   +M ++ G+K   K  GC
Sbjct: 514 LFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGC 568



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 110/486 (22%), Positives = 198/486 (40%), Gaps = 102/486 (20%)

Query: 17  ASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEI 76
           AS L +C   + + + +   +H H++  G      + N LI++Y K  +L  A+ +FD++
Sbjct: 226 ASILPVCAQSDDVINGVL--IHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQM 283

Query: 77  PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
              D+V+  ++IA                                 AY  N++   A+  
Sbjct: 284 EVRDLVSWNSIIA---------------------------------AYEQNNDPSTALRF 310

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           F+ M+   ++PD  T  S+ S  + + ++      +   + +        + NAL+++Y 
Sbjct: 311 FKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYA 370

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           K            M  A  VFD++P +D +SW T++TGY +N     A +  + M E   
Sbjct: 371 KL---------GYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRD 421

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
              N                     + T+ S+I A ++ G  + G ++HA L+    K +
Sbjct: 422 TIPN---------------------QGTWVSIIPAYSHVGALQQGMKIHAKLI----KNS 456

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
               + V   L+ LY KCG++ +A  +F ++P    V WNAI                  
Sbjct: 457 LYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAI------------------ 498

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
                        I+ L  +G GEE L+LF  M  E  K     F   +++C+  G ++ 
Sbjct: 499 -------------IASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDE 545

Query: 437 GRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAAL 494
           G++    +    G   SL     ++ +  R G +E A  +   MP   D+  W A+++A 
Sbjct: 546 GQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSAC 605

Query: 495 GQHGNG 500
             +GN 
Sbjct: 606 KIYGNA 611



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 134/276 (48%), Gaps = 15/276 (5%)

Query: 330 LYWKCGKVNEARDIFNQM----PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
           L+  C  VN  + +   +      +++V    +++ YV+ G I  ++S F+ + ++N+ S
Sbjct: 28  LFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFS 87

Query: 386 WTVMISGLAQNGYGEEGL----KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
           W  +IS   + G   E +    +LFS       +P  Y F   + +C    +L +G+++H
Sbjct: 88  WNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV---SLVDGKKVH 144

Query: 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGA 501
             +   G++  +    +L+ +Y+R GV++ A+ VF  MP  D  SWNAMI+   Q+GN A
Sbjct: 145 CCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAA 204

Query: 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG-PYGIPPGEDHYAR 560
            A+ +  +M  EG+  D IT  ++L  C  +  V  G      +H   +G+         
Sbjct: 205 GALGVLNRMKGEGVKMDTITVASILPVCAQSDDVING--VLIHLHVLKHGLDSDVFVSNA 262

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
            I++  + G+  +A+ V D +  +     W +++A 
Sbjct: 263 LINMYSKFGRLQDAQMVFDQMEVRDLVS-WNSIIAA 297



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 168/403 (41%), Gaps = 84/403 (20%)

Query: 21  QLCDPRNPITSSLARSVHAHMISSGFKPREHII-NRLIDIYCKSLKLVYARTLFDEIPQP 79
           QL D R      ++RS+   +I   +  ++ +I N L+++Y K   +  A T+FD++P+ 
Sbjct: 335 QLSDQR------ISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRK 388

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D ++  TL                                 +T Y+ N     AI+ +  
Sbjct: 389 DTISWNTL---------------------------------VTGYTQNGLASEAIDAYNM 415

Query: 140 MRR-DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
           M    D  P+  T+ S++ A +  V   +Q M++H  ++K+   L   V   LI +Y KC
Sbjct: 416 MEECRDTIPNQGTWVSIIPAYSH-VGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKC 474

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY-VKNDYLDAAREFLDGMSENVGV 257
                      +  A  +F E+P    + W  ++    +     +A + F D ++E    
Sbjct: 475 ---------GRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAE---- 521

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                              R++ D  T+ S++SAC++SGL   G++    +++ E    P
Sbjct: 522 -------------------RVKADHITFVSLLSACSHSGLVDEGQKCFD-IMQKEYGIKP 561

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA---YVSAGLIDEAKS 373
             SL     +V L  + G + +A ++   MP + D   W A+LSA   Y +A L   A  
Sbjct: 562 --SLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASD 619

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEG-LKLFSQMRLEGFK 415
               +   N + + V++S +  N    EG +K+ S  R  G +
Sbjct: 620 RLLEVDSEN-VGYYVLLSNIYANTEKWEGVIKVRSLARDRGLR 661


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/618 (37%), Positives = 351/618 (56%), Gaps = 66/618 (10%)

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKND-YLDAAREFLDGMSENVGVAWNALISGYVHR 269
           G AR +FDE+ +++ + +  M+  YV N  Y DA   +    ++           G+V  
Sbjct: 71  GLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQ-----------GFVP- 118

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
                      D +TY  V+ A + S    +G Q+H  +L+       + +L V N L+ 
Sbjct: 119 -----------DMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGL----DLNLYVGNGLIA 163

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA------------------ 371
           +Y KC  + EA+ + +++P RD+VSWN+++S Y   G  ++A                  
Sbjct: 164 MYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCT 223

Query: 372 -------------------KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
                              K +F  + +++++SW VMI+    N   +E + L+SQM   
Sbjct: 224 MASLLPAVTNTTSDNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEAN 283

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
           G +P   +    + +   L AL  GR++H          +L   NALI MYA+CG +  A
Sbjct: 284 GVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDA 343

Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
             VFN M   D VSW ++I+A G+ G G  A+ ++ +M   G+ PD I F++VL+AC+HA
Sbjct: 344 RAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHA 403

Query: 533 GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592
           GL+ +GR YF  M    GI P  +H+A  +DLL RAGK  EA   I  +P +P   +W  
Sbjct: 404 GLLDDGRYYFNLM-AECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGP 462

Query: 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           LL+ CR++ N+++GI AA++L  L P H+G YVLLSN+YA  GRW D A +R +M  +G+
Sbjct: 463 LLSACRVYSNMNIGILAADKLLMLNPEHSGYYVLLSNIYAKAGRWADVAAIRSIMERKGI 522

Query: 653 KKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMES 712
           KK PG S +E+++ VH FL  D +HP+++ +Y+ L+ LV +M++LGY+P+T   LHD+E 
Sbjct: 523 KKLPGISNVELNDGVHTFLAGDHSHPQSKKIYEELDVLVGKMKELGYMPETDSALHDVEE 582

Query: 713 DQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRD 772
           + KEY L+ HSEKLAVAF ++    G  +RV KNLR+CGDCH A K +SK+  REI++RD
Sbjct: 583 EDKEYHLAVHSEKLAVAFAIINTKPGTPIRVTKNLRVCGDCHVAAKLISKIAEREIIIRD 642

Query: 773 GKRFHHFRDGKCSCGDYW 790
             RFHHF++G CSCGDYW
Sbjct: 643 THRFHHFQEGCCSCGDYW 660



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 128/499 (25%), Positives = 221/499 (44%), Gaps = 96/499 (19%)

Query: 50  EHIINRLIDIY--CKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKT 107
           E + NR++D Y    +LK ++ + L D+  + +      L+  Y+A     LAR +F++ 
Sbjct: 21  EDLCNRILDQYPDINTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDE- 79

Query: 108 PLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEK 167
            +  ++ VF+N MI +Y +N     A+ +++ M      PD +T+  VL A +   +   
Sbjct: 80  -ITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSR-SDSLW 137

Query: 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS 227
             +Q+H  V+K G  L   V N LI++Y KC S         +  A++V DE+P RD +S
Sbjct: 138 VGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKS---------LKEAQQVLDEIPCRDVVS 188

Query: 228 WTTMMTGYVK----NDYLDAAREF-------------------LDGMSENV--------- 255
           W +M++ Y +    ND L+  RE                     +  S+NV         
Sbjct: 189 WNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTNTTSDNVLYVKEMFLK 248

Query: 256 -----GVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLG 301
                 ++WN +I+ YV+  +         +M    ++ D  +  SV+ A  +     LG
Sbjct: 249 LTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLG 308

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
           ++VH +  R +  P    +L + NAL+ +Y KCG + +AR +FNQM  RD+VSW +I+SA
Sbjct: 309 RRVHKFAERKKLLP----NLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISA 364

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
           Y                                + G G + + +F++MR  G  P   AF
Sbjct: 365 Y-------------------------------GKCGQGRDAVAVFAEMRNSGLNPDSIAF 393

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP- 480
              + +C+  G L++GR     +   G    L     ++ +  R G ++ A      MP 
Sbjct: 394 VSVLAACSHAGLLDDGRYYFNLMAECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPL 453

Query: 481 NVDSVSWNAMIAALGQHGN 499
             D   W  +++A   + N
Sbjct: 454 EPDERVWGPLLSACRVYSN 472



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 98/197 (49%), Gaps = 5/197 (2%)

Query: 337 VNEARDIFNQMPERDLVSWNA-----ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
           +N  + +  ++     + WN      ++  Y + G    A+ +F+ + ++N++ + VMI 
Sbjct: 34  INTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIR 93

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
               N   ++ L ++  M  +GF P  Y +   + + +   +L  G Q+H  ++  G D 
Sbjct: 94  SYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDL 153

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
           +L  GN LI MY +C  ++ A  V + +P  D VSWN+M++   Q+G    A+EL  +M 
Sbjct: 154 NLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREME 213

Query: 512 KEGILPDRITFLTVLSA 528
              + P+  T  ++L A
Sbjct: 214 ALNLKPNDCTMASLLPA 230



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 33/127 (25%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           SL R VH         P   + N LID+Y K   L  AR +F+++   D+V+ T++I+AY
Sbjct: 306 SLGRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAY 365

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                                                 G  A+ +F +MR   + PD+  
Sbjct: 366 GKC---------------------------------GQGRDAVAVFAEMRNSGLNPDSIA 392

Query: 152 FTSVLSA 158
           F SVL+A
Sbjct: 393 FVSVLAA 399



 Score = 42.7 bits (99), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 112/257 (43%), Gaps = 19/257 (7%)

Query: 438 RQLHAQLVHSGY-DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           ++LH ++++  Y   + S G  L+ +YA CG    A  +F+ + + + V +N MI +   
Sbjct: 38  KKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVN 97

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY---GIPP 553
           +     A+ +Y+ M  +G +PD  T+  VL A + +  +  G +    +HG     G+  
Sbjct: 98  NHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQ----IHGAVLKIGLDL 153

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
                   I +  +     EA+ V+D +P +     W ++++    +G  +  ++   ++
Sbjct: 154 NLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVS-WNSMVSVYAQNGRFNDALELCREM 212

Query: 614 --FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFL 671
               L P+      LL  +       D+   V+++     + K+   SW    N +    
Sbjct: 213 EALNLKPNDCTMASLLPAVTNTTS--DNVLYVKEMFLK--LTKKSVISW----NVMIAMY 264

Query: 672 VDDTAHPEAQAVYKYLE 688
           V+++   EA  +Y  +E
Sbjct: 265 VNNSMPKEAVVLYSQME 281


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/520 (41%), Positives = 324/520 (62%), Gaps = 5/520 (0%)

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
           +ML  RI  D  T+  +I A        +G+Q H+ ++R   +      + V N+LV +Y
Sbjct: 109 QMLKSRIWPDNITFPFLIKASTEMECVVVGEQTHSQIVRFGFQN----DVYVENSLVHMY 164

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
             CG +  A  IF QMP RD+VSW ++++ Y   G++++A+ +F+ M  RNL +W++MI+
Sbjct: 165 ANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMIN 224

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
           G A+N   E+ + LF  M+ EG    +      I+SCA LGALE G + H  +V S    
Sbjct: 225 GYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTV 284

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
           +L  G AL+ MY RCG +E A  VF  +P+ DS+SW+++I  L  HG+  +AI  + QM+
Sbjct: 285 NLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMV 344

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571
           + G  P  IT   VLSAC+H GLV +G   +E M   YGI P  +HY   +D+L RAGK 
Sbjct: 345 RLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKL 404

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631
           +EA++ I  +P KP+API  ALL  C+I+ N ++  +    L ++ P H+G YVLLSN+Y
Sbjct: 405 AEAENFILKMPVKPNAPILGALLGACKIYKNTEVAERVGNMLIEVKPEHSGYYVLLSNIY 464

Query: 632 ANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVF-LVDDTAHPEAQAVYKYLEQL 690
           A  G+W+    +R +M+++ VKK PG S IE+D K++ F + DD  HPE   + +  E++
Sbjct: 465 ACAGQWEKLESLRDIMKEKLVKKPPGWSLIEIDGKINKFSMGDDQKHPEMGKIKRLWEEI 524

Query: 691 VLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRIC 750
           + ++R +GY  +T     D++ ++KE A+  HSEKLA+A+G+MK   G T+R++KNLR+C
Sbjct: 525 LGKIRLIGYKGNTGDAFFDVDEEEKETAIHMHSEKLAIAYGMMKTKTGTTIRIVKNLRVC 584

Query: 751 GDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            DCH A K +S+V GRE +VRD  RFHHFR+G CSC DYW
Sbjct: 585 EDCHTATKLISEVYGREFIVRDRNRFHHFRNGLCSCRDYW 624



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/426 (26%), Positives = 193/426 (45%), Gaps = 66/426 (15%)

Query: 117 YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM----QM 172
           +N +I  +S  +    A   +  M +  + PDN TF  ++ A       E +C+    Q 
Sbjct: 87  FNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKA-----STEMECVVVGEQT 141

Query: 173 HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMM 232
           H  +V+ G      V N+L+ +Y  C          L+ AA R+F +MP RD +SWT+M+
Sbjct: 142 HSQIVRFGFQNDVYVENSLVHMYANC---------GLIAAAGRIFGQMPFRDVVSWTSMV 192

Query: 233 TGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR-------ELKMLMLR--IQLDEF 283
            GY K   ++ ARE  D M       W+ +I+GY          +L  LM R  +  +E 
Sbjct: 193 AGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANET 252

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
              SVIS+CA+ G    G++ H Y++++        +L +  ALV +YW+CG++ +A  +
Sbjct: 253 VMVSVISSCAHLGALEFGERAHEYVVKSHMT----VNLILGTALVDMYWRCGEIEKAIRV 308

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
           F ++P++D +SW++I                               I GLA +G+  + +
Sbjct: 309 FEELPDKDSLSWSSI-------------------------------IKGLAVHGHAHKAI 337

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITM 462
             FSQM   GF P D      +++C+  G ++ G +++  +    G +  L     ++ M
Sbjct: 338 HYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCIVDM 397

Query: 463 YARCG-VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
             R G + EA N +       ++    A++ A   + N   A E    ML E + P+   
Sbjct: 398 LGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYKNTEVA-ERVGNMLIE-VKPEHSG 455

Query: 522 FLTVLS 527
           +  +LS
Sbjct: 456 YYVLLS 461



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 149/316 (47%), Gaps = 37/316 (11%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           +    H+ ++  GF+   ++ N L+ +Y     +  A  +F ++P  D+V+ T+++A Y 
Sbjct: 137 VGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYC 196

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
               V+ AREMF++ P   R+   ++ MI  Y+ N+    AI+LF  M+R+ V  +    
Sbjct: 197 KCGMVEDAREMFDEMP--HRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVM 254

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            SV+S+ A +   E    + H  VVKS   +   +  AL+ +Y +C           +  
Sbjct: 255 VSVISSCAHLGALEFG-ERAHEYVVKSHMTVNLILGTALVDMYWRC---------GEIEK 304

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A RVF+E+P++D LSW++++ G   + +   A                      +H   +
Sbjct: 305 AIRVFEELPDKDSLSWSSIIKGLAVHGHAHKA----------------------IHYFSQ 342

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           M+ L     + T T+V+SAC++ GL   G +++  + R       E  L     +V +  
Sbjct: 343 MVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYG---IEPRLEHYGCIVDMLG 399

Query: 333 KCGKVNEARDIFNQMP 348
           + GK+ EA +   +MP
Sbjct: 400 RAGKLAEAENFILKMP 415



 Score =  105 bits (263), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 125/284 (44%), Gaps = 39/284 (13%)

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
           L+  A  +F  ++  NL  + V+I   +      +    ++QM      P +  F   I 
Sbjct: 68  LLGYAYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIK 127

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
           +   +  +  G Q H+Q+V  G+ + +   N+L+ MYA CG++ AA  +F  MP  D VS
Sbjct: 128 ASTEMECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVS 187

Query: 487 WNAMIAALGQHG------------------------NG-------ARAIELYEQMLKEGI 515
           W +M+A   + G                        NG        +AI+L+E M +EG+
Sbjct: 188 WTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGV 247

Query: 516 LPDRITFLTVLSACNHAGLVKEGRR---YFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
           + +    ++V+S+C H G ++ G R   Y    H    +  G       +D+  R G+  
Sbjct: 248 VANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILG----TALVDMYWRCGEIE 303

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           +A  V + LP K S   W +++ G  +HG+    I    Q+ +L
Sbjct: 304 KAIRVFEELPDKDSLS-WSSIIKGLAVHGHAHKAIHYFSQMVRL 346



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 99/236 (41%), Gaps = 15/236 (6%)

Query: 425 ITSCAGLGALE--NGRQLHAQLVHSGYDSSLSAGNALI----TMYARCGVVEAANCVFNT 478
           + SC+    L+  +G  L   L+   + +S     AL     T +    ++  A  +F+ 
Sbjct: 19  LQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGIFSQ 78

Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG 538
           + N +   +N +I         ++A   Y QMLK  I PD ITF  ++ A      V  G
Sbjct: 79  IQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVVVG 138

Query: 539 RRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG-C 597
            +    +   +G           + +    G  + A  +   +PF+     W +++AG C
Sbjct: 139 EQTHSQI-VRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVS-WTSMVAGYC 196

Query: 598 RIHGNIDLGIQAAEQLFQLMPH-HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           +        ++ A ++F  MPH +  T+ ++ N YA    ++ A  + +LM+  GV
Sbjct: 197 KCG-----MVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGV 247


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 256/746 (34%), Positives = 387/746 (51%), Gaps = 108/746 (14%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+ A   L+  Y  SD +  A ++F++ P   R+T+ +  +I  Y+ +     AIELF  
Sbjct: 72  DLFAWNILLNMYVKSDFLCDASKLFDEMP--ERNTISFVTLIQGYAESVRFLEAIELFVR 129

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQM----HCTVVKSGTGLFTSVLNALISVY 195
           + R+  + + F FT++L  L         C ++    H  + K G      V  ALI  Y
Sbjct: 130 LHREGHELNPFVFTTILKLLV-----STDCGELGWGIHACIFKLGHESNAFVGTALIDAY 184

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
             C           +  AR VFD +  +D +SWT M+T + +ND    A +         
Sbjct: 185 SVC---------GRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFS------ 229

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                           +M M+  + + FT+ SV  AC     F +GK VH   L++    
Sbjct: 230 ----------------QMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRY-- 271

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
                                            E DL    A+L  Y  +G ID+A+  F
Sbjct: 272 ---------------------------------ELDLYVGVALLDLYTKSGDIDDARRAF 298

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
           E + +++++ W+ MI+  AQ+   +E +++F QMR     P  + FA  + +CA +  L 
Sbjct: 299 EEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLN 358

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            G Q+H  ++  G  S +   NAL+ +YA+CG +E +  +F   P+ + V+WN +I    
Sbjct: 359 LGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHV 418

Query: 496 QHGNGARAIELYEQMLKE-------------------------------GILPDRITFLT 524
           Q G+G +A+ L+  ML+                                 + PD++TF+ 
Sbjct: 419 QLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKPDKLTFVG 478

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584
           VLSAC +AGL+ +G+ YF +M   +GI P  +HY   + LL R G   +A  +ID +PF+
Sbjct: 479 VLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQ 538

Query: 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVR 644
           PS  +W ALL  C IH +I+LG  +A+++ ++ P    T+VLLSNMYA   RWD+ A VR
Sbjct: 539 PSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVR 598

Query: 645 KLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTK 704
           K M+ +GVKKEPG SWIE    VH F V DT+HPE + +   LE L ++ +K GY+P+  
Sbjct: 599 KNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYN 658

Query: 705 FVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVV 764
            VL D+E ++KE  L  HSE+LA++FG+++ P G+ +R++KNLRIC DCH A K +SKVV
Sbjct: 659 VVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVV 718

Query: 765 GREIVVRDGKRFHHFRDGKCSCGDYW 790
            REIVVRD  RFHHF++G CSCGDYW
Sbjct: 719 QREIVVRDINRFHHFQEGLCSCGDYW 744



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 118/454 (25%), Positives = 205/454 (45%), Gaps = 48/454 (10%)

Query: 52  IINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKM 111
           I+  L+   C  L       +F    + +    T LI AYS    V +ARE+F+    K 
Sbjct: 145 ILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYK- 203

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ 171
            D V +  M+T ++ N     A++LF  MR    KP+NFTF SV  A  L +E       
Sbjct: 204 -DMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKA-CLGLEAFDVGKS 261

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H   +KS   L   V  AL+ +Y K            +  ARR F+E+P++D + W+ M
Sbjct: 262 VHGCALKSRYELDLYVGVALLDLYTK---------SGDIDDARRAFEEIPKKDVIPWSFM 312

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           +  Y ++D    A E    M + +                      +  ++FT+ SV+ A
Sbjct: 313 IARYAQSDQSKEAVEMFFQMRQAL----------------------VLPNQFTFASVLQA 350

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           CA      LG Q+H ++++          + V+NAL+ +Y KCG++  + ++F + P R+
Sbjct: 351 CATMEGLNLGNQIHCHVIKIGLHS----DVFVSNALMDVYAKCGRMENSMELFAESPHRN 406

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNL----LSWTVMISGLAQNGYGEEGLKLFS 407
            V+WN ++  +V  G  ++A  LF  M E  +    ++++  +   A     E GL++ S
Sbjct: 407 DVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHS 466

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARC 466
                  KP    F G +++CA  G L+ G+     ++   G +  +     ++ +  R 
Sbjct: 467 LT----VKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRG 522

Query: 467 GVVEAANCVFNTMPNVDSV-SWNAMIAALGQHGN 499
           G ++ A  + + +P   SV  W A++ A   H +
Sbjct: 523 GHLDKAVKLIDEIPFQPSVMVWRALLGACVIHND 556



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 111/438 (25%), Positives = 183/438 (41%), Gaps = 115/438 (26%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           + +SVH   + S ++   ++   L+D+Y KS  +  AR  F+EIP+ D++  + +IA Y+
Sbjct: 258 VGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYA 317

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
            SD  K                                  A+E+F  MR+  V P+ FTF
Sbjct: 318 QSDQSK---------------------------------EAVEMFFQMRQALVLPNQFTF 344

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            SVL A A  +E      Q+HC V+K G      V NAL+ VY KC           M  
Sbjct: 345 ASVLQACA-TMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKC---------GRMEN 394

Query: 213 ARRVFDEMPERDELSWTTMMTGYVK-NDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
           +  +F E P R++++W T++ G+V+  D   A R FL+                      
Sbjct: 395 SMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLN---------------------- 432

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
            ML  R+Q  E TY+S + ACA+      G Q+H+  +    KP                
Sbjct: 433 -MLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTV----KP---------------- 471

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS-----W 386
                              D +++  +LSA  +AGL+D+ ++ F +M + + +      +
Sbjct: 472 -------------------DKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHY 512

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
           T M+  L + G+ ++ +KL  ++    F+P    +   + +C     +E GR + AQ V 
Sbjct: 513 TCMVWLLGRGGHLDKAVKLIDEI---PFQPSVMVWRALLGACVIHNDIELGR-ISAQRVL 568

Query: 447 SGYDSSLSAGNALITMYA 464
                  +    L  MYA
Sbjct: 569 EMEPQDKATHVLLSNMYA 586



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 8/147 (5%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           +AS LQ C     +  +L   +H H+I  G      + N L+D+Y K  ++  +  LF E
Sbjct: 344 FASVLQACATMEGL--NLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAE 401

Query: 76  IP-QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDT-VFYNAMITAYSHNSNGHAA 133
            P + D+   T ++      D  K  R   N    +++ T V Y++ + A +      AA
Sbjct: 402 SPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACA----SLAA 457

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALA 160
           +E    +    VKPD  TF  VLSA A
Sbjct: 458 LEPGLQIHSLTVKPDKLTFVGVLSACA 484



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 54/108 (50%)

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478
           +A+A A+  C        G+ LH +++  G    L A N L+ MY +   +  A+ +F+ 
Sbjct: 39  HAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDE 98

Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           MP  +++S+  +I    +      AIEL+ ++ +EG   +   F T+L
Sbjct: 99  MPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTIL 146


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/587 (39%), Positives = 341/587 (58%), Gaps = 14/587 (2%)

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVK-NDYLDAAREFLDGMSENVGVAWNALISGY-- 266
           + +AR VF++M  R  ++W TM++GY K    +  A E  D + E   V++N ++  Y  
Sbjct: 89  LESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLR 148

Query: 267 ---VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
              V   L         D  ++ ++IS  A +G  +    + + +        PE +   
Sbjct: 149 SYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVM--------PEKNGVS 200

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
            +A+++ Y + G +  A +++  +  + +V   A+L+ Y+  G ++ A+ +F+ M  +NL
Sbjct: 201 WSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNL 260

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
           ++W  MI+G  +N   E+GLK+F  M     +P   + +  +  C+ L AL  GRQ+H  
Sbjct: 261 VTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQL 320

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
           +  S      +A  +LI+MY +CG +++A  +F  MP  D ++WNAMI+   QHG G +A
Sbjct: 321 VSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKA 380

Query: 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563
           + L+++M    + PD ITF+ V+ ACNHAG V  G +YF++M   +GI     HY   ID
Sbjct: 381 LHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVID 440

Query: 564 LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623
           LL RAG+  EA  +I  +PF P A I+  LL  CRIH N+DL   AA  L  L P  A  
Sbjct: 441 LLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATG 500

Query: 624 YVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAV 683
           YV L+N+YA   +WD  A+VRK+M++  V K PG SWIE+ +  H F   D  HPE  ++
Sbjct: 501 YVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSI 560

Query: 684 YKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRV 743
           +K L +L  +M+  GYVPD +F LHD+E + KE  L  HSEKLA+AFGLMK   G  +RV
Sbjct: 561 HKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRV 620

Query: 744 LKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            KNLR+CGDCH A KF+S +  REI+VRD  RFHHFR+G CSCGDYW
Sbjct: 621 FKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 116/509 (22%), Positives = 205/509 (40%), Gaps = 148/509 (29%)

Query: 19  QLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ 78
           ++ L  P N +T +L     + ++S         +N+ I  + ++  L  AR +F+++  
Sbjct: 52  RIHLVSPNN-VTPNLHVDTASDVVS---------LNKTIASFVRACDLESARNVFEKMSV 101

Query: 79  PDIVARTTLIAAYS-ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
              V   T+++ Y+  +  VK A E+F+K P    D+V YN M+  Y  +    AA+  F
Sbjct: 102 RTTVTWNTMLSGYTKVAGKVKEAHELFDKIPEP--DSVSYNIMLVCYLRSYGVKAALAFF 159

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
             M   D+                                        +  N LIS + +
Sbjct: 160 NKMPVKDI----------------------------------------ASWNTLISGFAQ 179

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG- 256
                       M  A  +F  MPE++ +SW+ M++GYV++  L+AA E    + +NVG 
Sbjct: 180 ---------NGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEE----LYKNVGM 226

Query: 257 ----------------------------------VAWNALISGYVHR-----ELK----M 273
                                             V WN++I+GYV        LK    M
Sbjct: 227 KSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTM 286

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE-AKPTPEFSLPVNNALVTLYW 332
           +  R++ +  + +SV+  C+N     LG+Q+H  + ++  +K T   +     +L+++Y 
Sbjct: 287 IESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACT-----SLISMYC 341

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           KCG ++ A  +F +MP +D+++WNA++S Y                              
Sbjct: 342 KCGDLDSAWKLFLEMPRKDVITWNAMISGY------------------------------ 371

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDS 451
            AQ+G G + L LF +MR    KP    F   I +C   G ++ G Q    +    G ++
Sbjct: 372 -AQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEA 430

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMP 480
                  +I +  R G ++ A  +   MP
Sbjct: 431 KPVHYTCVIDLLGRAGRLDEAVSLIKEMP 459



 Score = 47.0 bits (110), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 19/174 (10%)

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ-HGNGARA 503
           +H    S + + N  I  + R   +E+A  VF  M    +V+WN M++   +  G    A
Sbjct: 65  LHVDTASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEA 124

Query: 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED--HYARF 561
            EL++++ +    PD +++  +L     +  VK    +F  M       P +D   +   
Sbjct: 125 HELFDKIPE----PDSVSYNIMLVCYLRSYGVKAALAFFNKM-------PVKDIASWNTL 173

Query: 562 IDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
           I    + G+  +A D+   +P K     W A+++G   HG+    ++AAE+L++
Sbjct: 174 ISGFAQNGQMQKAFDLFSVMPEKNGVS-WSAMISGYVEHGD----LEAAEELYK 222


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 242/697 (34%), Positives = 389/697 (55%), Gaps = 61/697 (8%)

Query: 109 LKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQ 168
           LK    + + ++I  ++  S    A+  F +MR     PD+  F SVL +  +++ + + 
Sbjct: 65  LKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMM-DLRF 123

Query: 169 CMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER----- 223
              +H  +V+ G        NAL+++Y K +    + S+  +G    VFDEMP+R     
Sbjct: 124 GESVHGFIVRLGMDCDLYTGNALMNMYAKLLG---MGSKISVG---NVFDEMPQRTSNSG 177

Query: 224 -DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR---ELKMLMLR-- 277
            +++   T +  +     +D+ R   + M     V++N +I+GY      E  + M+R  
Sbjct: 178 DEDVKAETCIMPF----GIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREM 233

Query: 278 ----IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
               ++ D FT +SV+   +       GK++H Y++R       +  + + ++LV +Y K
Sbjct: 234 GTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGI----DSDVYIGSSLVDMYAK 289

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
             ++ ++  +F+++  RD +SWN++++ YV                              
Sbjct: 290 SARIEDSERVFSRLYCRDGISWNSLVAGYV------------------------------ 319

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL 453
            QNG   E L+LF QM     KP   AF+  I +CA L  L  G+QLH  ++  G+ S++
Sbjct: 320 -QNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNI 378

Query: 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE 513
              +AL+ MY++CG ++AA  +F+ M  +D VSW A+I     HG+G  A+ L+E+M ++
Sbjct: 379 FIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQ 438

Query: 514 GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE 573
           G+ P+++ F+ VL+AC+H GLV E   YF +M   YG+    +HYA   DLL RAGK  E
Sbjct: 439 GVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEE 498

Query: 574 AKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN 633
           A + I  +  +P+  +W  LL+ C +H N++L  + AE++F +   + G YVL+ NMYA+
Sbjct: 499 AYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYAS 558

Query: 634 LGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLE 693
            GRW + A++R  MR +G++K+P CSWIE+ NK H F+  D +HP    + ++L+ ++ +
Sbjct: 559 NGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQ 618

Query: 694 MRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDC 753
           M K GYV DT  VLHD++ + K   L  HSE+LAVAFG++    G T+RV KN+RIC DC
Sbjct: 619 MEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDC 678

Query: 754 HNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           H A KF+SK+  REI+VRD  RFHHF  G CSCGDYW
Sbjct: 679 HVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 131/511 (25%), Positives = 223/511 (43%), Gaps = 92/511 (18%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKL---VYARTLFDEIPQ-------PDIV 82
              SVH  ++  G     +  N L+++Y K L +   +    +FDE+PQ        D+ 
Sbjct: 123 FGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVK 182

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR 142
           A T ++        +   R +F   P K  D V YN +I  Y+ +     A+ + R+M  
Sbjct: 183 AETCIMPF-----GIDSVRRVFEVMPRK--DVVSYNTIIAGYAQSGMYEDALRMVREMGT 235

Query: 143 DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSP 202
            D+KPD+FT +SVL   +  V+  K   ++H  V++ G      + ++L+ +Y K     
Sbjct: 236 TDLKPDSFTLSSVLPIFSEYVDVIKG-KEIHGYVIRKGIDSDVYIGSSLVDMYAK----- 289

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND-YLDAAREFLDGMSENVGVAWNA 261
             S+R  +  + RVF  +  RD +SW +++ GYV+N  Y +A R F              
Sbjct: 290 --SAR--IEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLF-------------- 331

Query: 262 LISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
                     +M+  +++     ++SVI ACA+     LGKQ+H Y+LR         ++
Sbjct: 332 ---------RQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGS----NI 378

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
            + +ALV +Y KCG +  AR IF++M   D VSW AI+  +   G   EA SLFE     
Sbjct: 379 FIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFE----- 433

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
                                     +M+ +G KP   AF   +T+C+ +G ++      
Sbjct: 434 --------------------------EMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYF 467

Query: 442 AQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGN 499
             +    G +  L    A+  +  R G +E A    + M    + S W+ ++++   H N
Sbjct: 468 NSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKN 527

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACN 530
               +EL E++ ++    D       +  CN
Sbjct: 528 ----LELAEKVAEKIFTVDSENMGAYVLMCN 554



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 123/300 (41%), Gaps = 46/300 (15%)

Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
           S + ++S Y +  L+ EA  LF+ ++   +L+W  +I          + L  F +MR  G
Sbjct: 41  SASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASG 100

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR-CGV---- 468
             P    F   + SC  +  L  G  +H  +V  G D  L  GNAL+ MYA+  G+    
Sbjct: 101 RCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKI 160

Query: 469 --------------------VEAANC-----------VFNTMPNVDSVSWNAMIAALGQH 497
                               V+A  C           VF  MP  D VS+N +IA   Q 
Sbjct: 161 SVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQS 220

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
           G    A+ +  +M    + PD  T  +VL   +    V +G+     +HG Y I  G D 
Sbjct: 221 GMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKE----IHG-YVIRKGIDS 275

Query: 558 ----YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
                +  +D+  ++ +  +++ V   L  +     W +L+AG   +G  +  ++   Q+
Sbjct: 276 DVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGIS-WNSLVAGYVQNGRYNEALRLFRQM 334



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 98/220 (44%), Gaps = 17/220 (7%)

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
             +QLHAQ + +   S  SA + +I++Y    ++  A  +F T+ +   ++W ++I    
Sbjct: 23  QAKQLHAQFIRTQSLSHTSA-SIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFT 81

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG-------P 548
                ++A+  + +M   G  PD   F +VL +C     +    R+ E++HG        
Sbjct: 82  DQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCT----MMMDLRFGESVHGFIVRLGMD 137

Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
             +  G      +  LL    K S   +V D +P + S    E + A   I   +  GI 
Sbjct: 138 CDLYTGNALMNMYAKLLGMGSKIS-VGNVFDEMPQRTSNSGDEDVKAETCI---MPFGID 193

Query: 609 AAEQLFQLMPHH-AGTYVLLSNMYANLGRWDDAARVRKLM 647
           +  ++F++MP     +Y  +   YA  G ++DA R+ + M
Sbjct: 194 SVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREM 233


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 249/715 (34%), Positives = 389/715 (54%), Gaps = 76/715 (10%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           ++    +L+  YS    +  AR +F+    K  + V +N +I  YS   +     EL ++
Sbjct: 333 EVTVNNSLVDMYSKCGYLGEARALFDMNGGK--NVVSWNTIIWGYSKEGDFRGVFELLQE 390

Query: 140 MRRDD-VKPDNFTFTSVLSALALIVEEEKQCM---QMHCTVVKSGTGLFTSVLNALISVY 195
           M+R++ V+ +  T  +VL A +     E Q +   ++H    + G      V NA ++ Y
Sbjct: 391 MQREEKVRVNEVTVLNVLPACS----GEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAY 446

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            KC S         +  A RVF  M  +   SW  ++  + +N +   + +         
Sbjct: 447 AKCSS---------LDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLF------- 490

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                          L M+   +  D FT  S++ ACA     R GK++H ++LR     
Sbjct: 491 ---------------LVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRN-GLE 534

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
             EF   +  +L++LY +C                             S+ L+   K +F
Sbjct: 535 LDEF---IGISLMSLYIQC-----------------------------SSMLL--GKLIF 560

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
           + M  ++L+ W VMI+G +QN    E L  F QM   G KP + A  G + +C+ + AL 
Sbjct: 561 DKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALR 620

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            G+++H+  + +          ALI MYA+CG +E +  +F+ +   D   WN +IA  G
Sbjct: 621 LGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYG 680

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
            HG+G +AIEL+E M  +G  PD  TFL VL ACNHAGLV EG +Y   M   YG+ P  
Sbjct: 681 IHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKL 740

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
           +HYA  +D+L RAG+ +EA  +++ +P +P + IW +LL+ CR +G++++G + +++L +
Sbjct: 741 EHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLE 800

Query: 616 LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
           L P+ A  YVLLSN+YA LG+WD+  +VR+ M++ G+ K+ GCSWIE+   V+ FLV D 
Sbjct: 801 LEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRFLVSDG 860

Query: 676 AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKL 735
           +  E++ + +   +L  ++ K+GY PDT  VLH++E + K   L +HSEKLA++FGL+  
Sbjct: 861 SLSESKKIQQTWIKLEKKISKIGYKPDTSCVLHELEEEGKIKILKSHSEKLAISFGLLNT 920

Query: 736 PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             G T+RV KNLRIC DCHNA K +SKVV R+I+VRD KRFHHF++G C+CGD+W
Sbjct: 921 AKGTTLRVCKNLRICVDCHNAIKLVSKVVKRDIIVRDNKRFHHFKNGLCTCGDFW 975



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 137/462 (29%), Positives = 213/462 (46%), Gaps = 66/462 (14%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+V  T +IA YSA  +   +R +F+    K +D   YNA+++ YS N+    AI LF +
Sbjct: 127 DVVLSTRIIAMYSACGSPSDSRGVFDAA--KEKDLFLYNALLSGYSRNALFRDAISLFLE 184

Query: 140 -MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
            +   D+ PDNFT   V  A A + + E     +H   +K+G      V NALI++Y KC
Sbjct: 185 LLSATDLAPDNFTLPCVAKACAGVADVELG-EAVHALALKAGGFSDAFVGNALIAMYGKC 243

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
               FV S      A +VF+ M  R+ +SW ++M    +N           G  E  GV 
Sbjct: 244 ---GFVES------AVKVFETMRNRNLVSWNSVMYACSEN----------GGFGECCGVF 284

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
              LIS     E + L+     D  T  +VI ACA  G  R+G  VH   L  +   T E
Sbjct: 285 KRLLIS-----EEEGLV----PDVATMVTVIPACAAVGEVRMGMVVHG--LAFKLGITEE 333

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
            +  VNN+LV +Y KCG + EAR +F+    +++VSWN I+  Y   G   + + +FE +
Sbjct: 334 VT--VNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEG---DFRGVFELL 388

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
           +E                             R E  +  +      + +C+G   L + +
Sbjct: 389 QE---------------------------MQREEKVRVNEVTVLNVLPACSGEHQLLSLK 421

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           ++H      G+       NA +  YA+C  ++ A  VF  M      SWNA+I A  Q+G
Sbjct: 422 EIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNG 481

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
              ++++L+  M+  G+ PDR T  ++L AC     ++ G+ 
Sbjct: 482 FPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKE 523



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 113/481 (23%), Positives = 219/481 (45%), Gaps = 85/481 (17%)

Query: 63  SLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
           SLK ++         + ++VA    +AAY+   ++  A  +F    ++ +    +NA+I 
Sbjct: 419 SLKEIHGYAFRHGFLKDELVA-NAFVAAYAKCSSLDCAERVF--CGMEGKTVSSWNALIG 475

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC-MQMHCTVVKSGT 181
           A++ N     +++LF  M    + PD FT  S+L A A +  +  +C  ++H  ++++G 
Sbjct: 476 AHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARL--KFLRCGKEIHGFMLRNGL 533

Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY- 240
            L   +  +L+S+Y++C       S  L+G  + +FD+M  +  + W  M+TG+ +N+  
Sbjct: 534 ELDEFIGISLMSLYIQC-------SSMLLG--KLIFDKMENKSLVCWNVMITGFSQNELP 584

Query: 241 ---LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGL 297
              LD  R+ L G                           I+  E   T V+ AC+    
Sbjct: 585 CEALDTFRQMLSG--------------------------GIKPQEIAVTGVLGACSQVSA 618

Query: 298 FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA 357
            RLGK+VH++ L+            V  AL+ +Y KCG + ++++IF+++ E+D   WN 
Sbjct: 619 LRLGKEVHSFALKAHLSEDA----FVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNV 674

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
           I++ Y                                 +G+G + ++LF  M+ +G +P 
Sbjct: 675 IIAGY-------------------------------GIHGHGLKAIELFELMQNKGGRPD 703

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVH-SGYDSSLSAGNALITMYARCGVVEAANCVF 476
            + F G + +C   G +  G +   Q+ +  G    L     ++ M  R G +  A  + 
Sbjct: 704 SFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLV 763

Query: 477 NTMPNV-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           N MP+  DS  W++++++   +G+     E+ +++L+  + P++     +LS   +AGL 
Sbjct: 764 NEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLE--LEPNKAENYVLLSNL-YAGLG 820

Query: 536 K 536
           K
Sbjct: 821 K 821



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 140/298 (46%), Gaps = 43/298 (14%)

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           ++ AC +     +G++VHA +    A       + ++  ++ +Y  CG  +++R +F+  
Sbjct: 98  LLRACGHHKNIHVGRKVHALV---SASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAA 154

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
            E+DL  +NA+LS Y    L  +A SLF                           L+L S
Sbjct: 155 KEKDLFLYNALLSGYSRNALFRDAISLF---------------------------LELLS 187

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467
              L    P ++       +CAG+  +E G  +HA  + +G  S    GNALI MY +CG
Sbjct: 188 ATDL---APDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCG 244

Query: 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML---KEGILPDRITFLT 524
            VE+A  VF TM N + VSWN+++ A  ++G       +++++L   +EG++PD  T +T
Sbjct: 245 FVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVT 304

Query: 525 VLSACNHAGLVKEGRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579
           V+ AC   G V+ G      +HG     GI          +D+  + G   EA+ + D
Sbjct: 305 VIPACAAVGEVRMGM----VVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFD 358



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 150/347 (43%), Gaps = 46/347 (13%)

Query: 41  MISSGFKPREHIINRLIDIYCKSLKL------VYARTLFDEIPQPDIVARTTLIAAYSAS 94
           M+ SG  P    I  L+ + C  LK       ++   L + +   + +   +L++ Y   
Sbjct: 493 MMDSGMDPDRFTIGSLL-LACARLKFLRCGKEIHGFMLRNGLELDEFIG-ISLMSLYIQC 550

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
            ++ L + +F+K  ++ +  V +N MIT +S N     A++ FR M    +KP     T 
Sbjct: 551 SSMLLGKLIFDK--MENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTG 608

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           VL A +  V   +   ++H   +K+       V  ALI +Y KC           M  ++
Sbjct: 609 VLGACSQ-VSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKC---------GCMEQSQ 658

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
            +FD + E+DE  W  ++ GY  + +   A E  + M    G                  
Sbjct: 659 NIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGG------------------ 700

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
               + D FT+  V+ AC ++GL   G +   YL + +     +  L     +V +  + 
Sbjct: 701 ----RPDSFTFLGVLIACNHAGLVTEGLK---YLGQMQNLYGVKPKLEHYACVVDMLGRA 753

Query: 335 GKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           G++ EA  + N+MP E D   W+++LS+  + G ++  + + + + E
Sbjct: 754 GQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLE 800


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/627 (37%), Positives = 353/627 (56%), Gaps = 49/627 (7%)

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           MH  ++K G         AL+S Y K           L+  A  +FDE P RD   ++++
Sbjct: 107 MHARILKEGLAHHPPNPAALVSAYAKS---------RLLPDALHLFDETPRRDIYIYSSL 157

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQL-------DEFT 284
           +T                             +S     EL + +LR  L       D F 
Sbjct: 158 LTA----------------------------VSHSASPELALPILRCMLSADALHPDHFV 189

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
            +SV S  A     RLG+Q+HA+ + +           V ++LV +Y KCG  ++ R +F
Sbjct: 190 ISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDV----VKSSLVDMYCKCGSPDDGRKVF 245

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           + M  ++ V W A++S Y S G  +EA  LF +M  RNL +WT +ISGL   G     ++
Sbjct: 246 DSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVE 305

Query: 405 LFSQMRLEGFKPCD-YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
           LF +MR +G +  D +  +  I   A L A   GRQLH   +  G+ S++  GNALI MY
Sbjct: 306 LFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMY 365

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
           ++C  + +A  VF  +   D +SW  M+    QHG    A+ LY++M+  G  P+ +TF+
Sbjct: 366 SKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFV 425

Query: 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF 583
            ++ AC+HAGLV++GR+ FE+M   YGI P   HY  ++DLL R+G   EA++++ ++P+
Sbjct: 426 GLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPY 485

Query: 584 KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARV 643
           +P    W ALL+ C  + + ++ I+ +++L +L P  + TY+LLSN+YA  G+WD  A+V
Sbjct: 486 EPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKV 545

Query: 644 RKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDT 703
           RK M    ++KEPG SWIE   +  +F   +      + +  +LE++VLEMRK GYVPDT
Sbjct: 546 RKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIMVFLEEMVLEMRKRGYVPDT 605

Query: 704 KFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKV 763
             V+HD+E  +KE+ L  HSE+LAVAFGL+K P G+ +RV+KNLR+C DCH   K +S++
Sbjct: 606 SSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPGSVIRVVKNLRVCVDCHTVMKLISEI 665

Query: 764 VGREIVVRDGKRFHHFRDGKCSCGDYW 790
             R+IVVRD  RFHHF  GKCSC ++W
Sbjct: 666 THRKIVVRDSSRFHHFEGGKCSCSEFW 692



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 123/440 (27%), Positives = 205/440 (46%), Gaps = 62/440 (14%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM-RRDDV 145
           L++AY+ S  +  A  +F++TP   RD   Y++++TA SH+++   A+ + R M   D +
Sbjct: 126 LVSAYAKSRLLPDALHLFDETP--RRDIYIYSSLLTAVSHSASPELALPILRCMLSADAL 183

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVS 205
            PD+F  +SV S  A +    +   Q+H   V S       V ++L+ +Y KC  SP   
Sbjct: 184 HPDHFVISSVASVFARL-RSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKC-GSP--- 238

Query: 206 SRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265
                   R+VFD M  ++ + WT +++GY  N   + A +    M      AW ALISG
Sbjct: 239 -----DDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISG 293

Query: 266 YVHR-----------ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
            V+            E++   +RI  D F  + VI   A+   F LG+Q+H   +R    
Sbjct: 294 LVNTGESVGAVELFVEMRRDGVRID-DAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFL 352

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
                ++ V NAL+ +Y KC  +  AR++F  +  RD++SW                   
Sbjct: 353 S----NMIVGNALIDMYSKCSDILSAREVFEGITFRDVISW------------------- 389

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
                       T M+ G AQ+G  EE L L+ +M L G KP +  F G I +C+  G +
Sbjct: 390 ------------TTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLV 437

Query: 435 ENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIA 492
           + GRQL   + +  G    L      + + +R G +  A  +  TMP   D  +W A+++
Sbjct: 438 QKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLS 497

Query: 493 ALGQHGNGARAIELYEQMLK 512
           A  ++ +    I + +++L+
Sbjct: 498 ACTKYKDAEMCIRISDKLLE 517



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 171/369 (46%), Gaps = 40/369 (10%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R +HAH + S +   + + + L+D+YCK       R +FD +   + V  T L++ Y+
Sbjct: 205 LGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYA 264

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
           ++   + A ++F   P   R+   + A+I+   +      A+ELF +MRRD V+ D+   
Sbjct: 265 SNGRSEEALQLFRSMP--GRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFV 322

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            S++   +  +       Q+H + ++ G      V NALI +Y KC         S + +
Sbjct: 323 LSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKC---------SDILS 373

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           AR VF+ +  RD +SWTTM+ G  ++   + A    D                      +
Sbjct: 374 AREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYD----------------------R 411

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           M++   + +E T+  +I AC+++GL + G+Q+    ++ E   TP   L      + L  
Sbjct: 412 MVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFES-MKNEYGITPR--LQHYTCYLDLLS 468

Query: 333 KCGKVNEARDIFNQMP-ERDLVSWNAILSA---YVSAGLIDEAKSLFEAMRERNLLSWTV 388
           + G + EA ++   MP E D  +W A+LSA   Y  A +          +R ++  ++ +
Sbjct: 469 RSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYIL 528

Query: 389 MISGLAQNG 397
           + +  A NG
Sbjct: 529 LSNVYAVNG 537


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 261/765 (34%), Positives = 408/765 (53%), Gaps = 112/765 (14%)

Query: 34   ARSVHAHMISSGF-KPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
             + VHA++  SG    R  I N L+++Y K   +  A ++F  +P               
Sbjct: 474  GQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPS-------------- 519

Query: 93   ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                               +DTV +N+MI+   HN     A+  F  M+R+ + P NF+ 
Sbjct: 520  -------------------KDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSV 560

Query: 153  TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
             S LS+ + +        Q+H    K G  L  SV NAL+++Y +  S         +  
Sbjct: 561  ISTLSSCSSL-GWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDS---------INE 610

Query: 213  ARRVFDEMPERDELSWTTMMTGYVKND--YLDAAREFLDGMSENVGVAWNALISGYVHRE 270
             ++VF +MPE D++SW + +    K +   L A + FL+ M       W           
Sbjct: 611  CQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQ----AGWRP--------- 657

Query: 271  LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
                      +  T+ ++++A ++  +  LG Q+HA +L+            + NAL+  
Sbjct: 658  ----------NRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDN----AIENALLAF 703

Query: 331  YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
            Y KC ++ +   IF++M ER                              R+ +SW  MI
Sbjct: 704  YGKCEQMEDCEIIFSRMSER------------------------------RDEVSWNSMI 733

Query: 391  SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
            SG   +G   + + L   M   G K   + FA  +++CA +  LE G ++HA  V +  +
Sbjct: 734  SGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLE 793

Query: 451  SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
            S +  G+AL+ MYA+CG ++ A+  F  MP  +  SWN+MI+   +HG+G +A++++ +M
Sbjct: 794  SDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRM 853

Query: 511  LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
             + G  PD +TF+ VLSAC+H GLV EG ++F++M   YG+ P  +H++  +DLL RAG 
Sbjct: 854  KQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGD 913

Query: 571  FSEAKDVIDSLPFKPSAPIWEALL-AGCRIHG-NIDLGIQAAEQLFQLMPHHAGTYVLLS 628
              + +D I ++P  P+  IW  +L A CR +G N +LG +AA+ L +L P +A  YVLLS
Sbjct: 914  VKKIEDFIKTMPMDPNILIWRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLS 973

Query: 629  NMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLE 688
            NM+A  G W+D    R  MR   VKK+ GCSW+ + + VH+F+  D  HPE + +Y+ L+
Sbjct: 974  NMHAAGGNWEDVVEARLAMRKAAVKKDAGCSWVNMKDGVHLFVAGDQTHPEKEKIYEKLK 1033

Query: 689  QLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMK---LPGGATVRVLK 745
            +L+ ++R  GYVP+TK+ L+D+E + KE  LS HSEKLA+AF L +   LP    +R++K
Sbjct: 1034 ELMNKIRDAGYVPETKYALYDLELENKEELLSYHSEKLAIAFVLTRKSELP----IRIMK 1089

Query: 746  NLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            NLR+CGDCH AFK++SK+VGR+I++RD  RFHHF  G CSCGDYW
Sbjct: 1090 NLRVCGDCHTAFKYISKIVGRQIILRDSNRFHHFGGGMCSCGDYW 1134



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 148/559 (26%), Positives = 246/559 (44%), Gaps = 127/559 (22%)

Query: 18  SQLQLCDP---RNPITSSL--ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTL 72
           SQLQ  D    R   +SSL  A  +H  +  +GF       N LI+IY +   LV AR L
Sbjct: 138 SQLQQLDSEFDRYKTSSSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKL 197

Query: 73  FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
           FDE+PQ ++V+ + LI+ Y+            N+ P                        
Sbjct: 198 FDEMPQKNLVSWSCLISGYTQ-----------NRMP----------------------DE 224

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC--------MQMHCTVVKSGTGLF 184
           A  LF+ +    + P++F   S L A        +QC        MQ+H  + K      
Sbjct: 225 ACSLFKGVISSGLLPNHFAVGSALRAC-------QQCGSTGIKLGMQIHAFICKLPCVSD 277

Query: 185 TSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAA 244
             + N L+S+Y  C  S        +  A RVFDE+  R+ ++W ++++ Y +     +A
Sbjct: 278 MILSNVLMSMYSDCSGS--------IDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSA 329

Query: 245 REFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISAC---ANSGLFRLG 301
            +    M                  +++ + L ++ +E+T  S+++A    A+ GL  L 
Sbjct: 330 FKLFSVM------------------QMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLE 371

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
           +     L R E K      L V +ALV  + + G ++ A+ IF QM +R+ V+ N ++  
Sbjct: 372 QM----LTRIE-KSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVG 426

Query: 362 YVSAGLIDEAKSLFEAMR---ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
                  +EA  +F+ M+   E N  S  V++S   +          FS ++ EG +   
Sbjct: 427 LARQHQGEEAAKVFKEMKDLVEINSESLVVLLSTFTE----------FSNLK-EGKR--- 472

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGY-DSSLSAGNALITMYARCGVVEAANCVFN 477
                             G+++HA L  SG  D+ +S GNAL+ MY +C  ++ A  VF 
Sbjct: 473 -----------------KGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQ 515

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKE 537
            MP+ D+VSWN+MI+ L  +     A+  +  M + G++P   + ++ LS+C+  G +  
Sbjct: 516 LMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTL 575

Query: 538 GRRYFETMHGPYGIPPGED 556
           GR+    +HG  G   G D
Sbjct: 576 GRQ----IHGE-GFKWGLD 589



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 136/591 (23%), Positives = 246/591 (41%), Gaps = 93/591 (15%)

Query: 46  FKPREHIINRLIDIYCK--SLKLVYARTLFDEIPQP----DIVARTTLIAAYSASDNVKL 99
            +P E+ +  L+   C      LV    +   I +     D+   + L+  ++    +  
Sbjct: 345 LRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDC 404

Query: 100 AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL 159
           A+ +F +  +  R+ V  N ++   +    G  A ++F++M+ D V+ ++ +   +LS  
Sbjct: 405 AKMIFKQ--MYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMK-DLVEINSESLVVLLSTF 461

Query: 160 ---ALIVEEEKQCMQMHCTVVKSG-TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARR 215
              + + E +++  ++H  + +SG      S+ NAL+++Y KC +         +  A  
Sbjct: 462 TEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTA---------IDNACS 512

Query: 216 VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLM 275
           VF  MP +D +SW +M++G   N+  + A      M  N  V  N               
Sbjct: 513 VFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSN--------------- 557

Query: 276 LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG 335
                  F+  S +S+C++ G   LG+Q+H        K   +  + V+NAL+TLY    
Sbjct: 558 -------FSVISTLSSCSSLGWLTLGRQIHG----EGFKWGLDLDVSVSNALLTLY---- 602

Query: 336 KVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQ 395
                        E D                I+E + +F  M E + +SW   I  LA+
Sbjct: 603 ------------AETDS---------------INECQKVFFQMPEYDQVSWNSFIGALAK 635

Query: 396 -NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
                 + LK F +M   G++P    F   + + +    L  G Q+HA ++        +
Sbjct: 636 YEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNA 695

Query: 455 AGNALITMYARCGVVEAANCVFNTMPN-VDSVSWNAMIAALGQHGNGARAIELYEQMLKE 513
             NAL+  Y +C  +E    +F+ M    D VSWN+MI+     G   +A++L   M++ 
Sbjct: 696 IENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQR 755

Query: 514 GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY---ARFIDLLCRAGK 570
           G   D  TF TVLSAC     ++ G      +H        E      +  +D+  + GK
Sbjct: 756 GQKLDGFTFATVLSACASVATLERGME----VHACAVRACLESDVVVGSALVDMYAKCGK 811

Query: 571 FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621
              A    + +P + +   W ++++G   HG+     Q A ++F  M  H 
Sbjct: 812 IDYASRFFELMPVR-NIYSWNSMISGYARHGH----GQKALKIFTRMKQHG 857



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 31/179 (17%)

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
           +L +   LH QL  +G+   +   N LI +Y R G + +A  +F+ MP  + VSW+ +I+
Sbjct: 155 SLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLIS 214

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552
              Q+     A  L++ ++  G+LP+     + L AC                 G  GI 
Sbjct: 215 GYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQC--------------GSTGIK 260

Query: 553 PGEDHYARFIDLLCR----------------AGKFSEAKDVIDSLPFKPSAPIWEALLA 595
            G   +A    L C                 +G   +A  V D + F+ S   W ++++
Sbjct: 261 LGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVT-WNSIIS 318


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/572 (40%), Positives = 328/572 (57%), Gaps = 14/572 (2%)

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE---------LKMLMLRIQ 279
           T+++T Y       AAR  L     +  V WNALISG+             + M      
Sbjct: 82  TSLVTAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAA 141

Query: 280 LDEFTYTSVISACAN-SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
               TY SV+SAC   +G   LG QVH  ++ +   P     L V NALV +Y +C  + 
Sbjct: 142 PTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLP----DLRVENALVDMYAECADME 197

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGY 398
            A  +F+ M  R +VSW ++LS     G +DEA+ LF  M ER+ +SWT MI G  Q   
Sbjct: 198 SAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAAR 257

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
             E L++F +M+       ++     IT+CA LGALE G  +   +   G       GNA
Sbjct: 258 FREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNA 317

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           LI MY++CG +E A  VF  M + D  +W A+I  L  +G G  AIE++ +M+     PD
Sbjct: 318 LIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPD 377

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVI 578
            +TF+ VL+AC HAGLV +GR +F +M   Y I P   HY   IDL  RAGK +EA D I
Sbjct: 378 EVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAI 437

Query: 579 DSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWD 638
           D +P  P++ IW  LLA CR+HGN ++G    E+L Q+ P ++  Y LLSN+YA   RW+
Sbjct: 438 DQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENSTVYTLLSNIYAKCNRWE 497

Query: 639 DAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLG 698
           D  R+R  + ++G+KKEPGCS IE++  +H F+  D +HP ++ +Y  LE ++ ++  +G
Sbjct: 498 DVRRLRHTIMEKGIKKEPGCSLIEMNGIIHEFVAGDQSHPMSKEIYCKLESIINDLNNVG 557

Query: 699 YVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFK 758
           Y PD   V  ++  ++K+  L  HSEKLA+AF L+       +R++KNLR+C DCHNA K
Sbjct: 558 YFPDVTEVFVEVAEEEKQKVLFWHSEKLAIAFALLSSEPNTVIRIVKNLRMCLDCHNAIK 617

Query: 759 FMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            +S++ GRE+VVRD  RFHHFR G CSC DYW
Sbjct: 618 LISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 649



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 130/430 (30%), Positives = 195/430 (45%), Gaps = 58/430 (13%)

Query: 110 KMRDT-VFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQ 168
           + RDT V +NA+I+ ++       A   F DM R    P   T+ SVLSA      +   
Sbjct: 104 RERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLL 163

Query: 169 CMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSW 228
            MQ+H  VV SG      V NAL+ +Y +C           M +A ++FD M  R  +SW
Sbjct: 164 GMQVHGRVVGSGVLPDLRVENALVDMYAECAD---------MESAWKLFDGMQVRSVVSW 214

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH----REL-----KMLMLRIQ 279
           T++++G  +   +D AR+    M E   V+W A+I GYV     RE      +M    + 
Sbjct: 215 TSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVS 274

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            DEFT  SVI+ACA  G   +G+ V  Y+ R   K        V NAL+ +Y KCG +  
Sbjct: 275 ADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIK----MDAFVGNALIDMYSKCGSIER 330

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
           A D+F  M  RD  +W AI                               I GLA NGYG
Sbjct: 331 ALDVFKDMHHRDKFTWTAI-------------------------------ILGLAVNGYG 359

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNA 458
           EE +++F +M      P +  F G +T+C   G ++ GR+    +  +     ++     
Sbjct: 360 EEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGC 419

Query: 459 LITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
           +I ++ R G +  A    + MP   +S  W  ++AA   HGN      + E++L+  + P
Sbjct: 420 IIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQ--MDP 477

Query: 518 DRITFLTVLS 527
           +  T  T+LS
Sbjct: 478 ENSTVYTLLS 487



 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 158/335 (47%), Gaps = 48/335 (14%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L   VH  ++ SG  P   + N L+D+Y +   +  A  LFD +    +V+ T+L++  +
Sbjct: 163 LGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLT 222

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
               V  AR++F + P   RDTV + AMI  Y   +    A+E+FR+M+  +V  D FT 
Sbjct: 223 RLGRVDEARDLFGRMP--ERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTM 280

Query: 153 TSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
            SV++A A L   E  + ++++ +  + G  +   V NALI +Y KC S         + 
Sbjct: 281 VSVITACAQLGALEMGEWVRVYMS--RQGIKMDAFVGNALIDMYSKCGS---------IE 329

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A  VF +M  RD+ +WT ++ G   N Y + A E    M   +GV+             
Sbjct: 330 RALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRM---IGVSETP---------- 376

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN----NAL 327
                    DE T+  V++AC ++GL   G++    +  T       +++  N      +
Sbjct: 377 ---------DEVTFIGVLTACTHAGLVDKGREFFLSMRET-------YNIAPNVVHYGCI 420

Query: 328 VTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
           + L+ + GK+ EA D  +QMP   +   W  +L+A
Sbjct: 421 IDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAA 455



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 92/407 (22%), Positives = 151/407 (37%), Gaps = 77/407 (18%)

Query: 244 AREFLDGMSENVGVAWNA-LISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGK 302
           AR  L+G+     VA     ++GY     +ML      D +T+  ++ A A        +
Sbjct: 8   ARRLLEGIPRRCLVAAREDAVAGYA----RMLARGAMPDAYTFPPLLKAVARGSSAAPVR 63

Query: 303 QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY 362
            VHA++++            V  +LVT Y   G    AR + ++      V WNA++S +
Sbjct: 64  AVHAHVVKFGMGRNAH----VATSLVTAYAAGGDGAAARALLSERERDTPVVWNALISGH 119

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
                 +  +   EA                            F  M   G  P    + 
Sbjct: 120 ------NRCRRFGEACCS-------------------------FVDMARAGAAPTPVTYV 148

Query: 423 GAITSCA-GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC--------------- 466
             +++C  G G +  G Q+H ++V SG    L   NAL+ MYA C               
Sbjct: 149 SVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQV 208

Query: 467 ----------------GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
                           G V+ A  +F  MP  D+VSW AMI    Q      A+E++ +M
Sbjct: 209 RSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREM 268

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
               +  D  T ++V++AC   G ++ G  +        GI          ID+  + G 
Sbjct: 269 QCSNVSADEFTMVSVITACAQLGALEMG-EWVRVYMSRQGIKMDAFVGNALIDMYSKCGS 327

Query: 571 FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
              A DV   +  +     W A++ G  ++G    G +A E   +++
Sbjct: 328 IERALDVFKDMHHRDKF-TWTAIILGLAVNG---YGEEAIEMFHRMI 370



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 103/251 (41%), Gaps = 8/251 (3%)

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
           E+ +  +++M   G  P  Y F   + + A   +    R +HA +V  G   +     +L
Sbjct: 25  EDAVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSL 84

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           +T YA  G   AA  + +       V WNA+I+   +      A   +  M + G  P  
Sbjct: 85  VTAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTP 144

Query: 520 ITFLTVLSACNHA-GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVI 578
           +T+++VLSAC    G V  G +    + G  G+ P        +D+         A  + 
Sbjct: 145 VTYVSVLSACGKGTGDVLLGMQVHGRVVGS-GVLPDLRVENALVDMYAECADMESAWKLF 203

Query: 579 DSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH-AGTYVLLSNMYANLGRW 637
           D +  + S   W +LL+G    G +D     A  LF  MP     ++  + + Y    R+
Sbjct: 204 DGMQVR-SVVSWTSLLSGLTRLGRVD----EARDLFGRMPERDTVSWTAMIDGYVQAARF 258

Query: 638 DDAARVRKLMR 648
            +A  + + M+
Sbjct: 259 REALEMFREMQ 269


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/574 (38%), Positives = 327/574 (56%), Gaps = 44/574 (7%)

Query: 226 LSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK---------MLML 276
           +SW  ++ GYVKN  L+ AR+  D M       WNA+++G  +  L          M   
Sbjct: 1   MSWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRRE 60

Query: 277 RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
            +Q DE+   S+   CA       G+QVHAY++R+                         
Sbjct: 61  GMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGL----------------------- 97

Query: 337 VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
                       +RD+   +++   Y+  G + + ++   A+   N++S    ISG  QN
Sbjct: 98  ------------DRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIVSCNTTISGRTQN 145

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
           G  E  L+ F  MR  G +     F  A+TSC+ L AL  G+Q+HA  + +G D  +   
Sbjct: 146 GDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVDKVVPVM 205

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
            +L+ MY+RCG +  +  V       D V  +AMI+A G HG+G +A+ L++QM+  G  
Sbjct: 206 TSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAE 265

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
           P+ +TFLT+L AC+H+GL  EG   FE M   YG+ P   HY   +DLL R+G  +EA+D
Sbjct: 266 PNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIVDLLGRSGCLNEAED 325

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636
           +I S+P +P   IW+ LL+ C+     D+  + AE++ +L PH + +YVLLSN+ A   R
Sbjct: 326 LILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHDSASYVLLSNIRATSSR 385

Query: 637 WDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRK 696
           W+D ++VR+ MR++ V+KEPG SW+E+  ++H F   D +H   + + + LE+++  +R+
Sbjct: 386 WEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQREIVECLEEMMTRIRQ 445

Query: 697 LGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNA 756
            GY PD   V HDME ++KE +L+ HSEKLA+AF  + LP G  +RV+KNLR+C DCH A
Sbjct: 446 CGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHVA 505

Query: 757 FKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            K MSKV+GREIVVRD  RFHHF+DGKCSCGDYW
Sbjct: 506 IKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 539



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/409 (21%), Positives = 171/409 (41%), Gaps = 71/409 (17%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           LI  Y  + +++ AR++F++ P   R+   +NAM+   +++     ++  F  MRR+ ++
Sbjct: 6   LIGGYVKNGDLETARKLFDEMP--ARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQ 63

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           PD +   S+    A +  +     Q+H  VV+SG      V ++L  +Y++C        
Sbjct: 64  PDEYGLGSLFRCCAGL-RDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRC-------- 114

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              +         +P  + +S  T ++G  +N   + A EF   M    GV  NA+    
Sbjct: 115 -GFLRDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLM-RGAGVEANAV---- 168

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                            T+ S +++C++      G+Q+HA  ++T         +PV  +
Sbjct: 169 -----------------TFVSAVTSCSDLAALAQGQQIHALAIKTGVDKV----VPVMTS 207

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           LV +Y +CG + ++  +  +    DLV  +A++SAY                        
Sbjct: 208 LVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAY------------------------ 243

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
                    +G+G++ + LF QM   G +P +  F   + +C+  G  + G      +  
Sbjct: 244 -------GFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTK 296

Query: 447 S-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAA 493
           + G   S+     ++ +  R G +  A  +  +MP   D V W  +++A
Sbjct: 297 TYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSA 345


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 247/717 (34%), Positives = 380/717 (52%), Gaps = 81/717 (11%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+     LIA Y+    ++ A  +F    +  RD V +N +++    N     A+  FRD
Sbjct: 282 DVYVANALIAMYAKCGRMEDAERVF--ASMLCRDYVSWNTLLSGLVQNELYRDALNYFRD 339

Query: 140 MRRDDVKPDNFTFTSVLSALA----LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           M+    KPD  +  ++++A      L+  +E     +H   +++G      + N LI +Y
Sbjct: 340 MQNSAQKPDQVSVLNLIAASGRSGNLLNGKE-----VHAYAIRNGLDSNMQIGNTLIDMY 394

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND-YLDAAREFLDGMSEN 254
            KC           MG A   F+ M E+D +SWTT++ GY +N+ +L+A   F       
Sbjct: 395 AKCCCVKH------MGYA---FECMHEKDLISWTTIIAGYAQNECHLEAINLFR------ 439

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
                            K+ +  + +D     SV+ AC+        +++H Y+ +    
Sbjct: 440 -----------------KVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFK---- 478

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
                                     RD+       D++  NAI++ Y   G  D A+  
Sbjct: 479 --------------------------RDL------ADIMLQNAIVNVYGEVGHRDYARRA 506

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
           FE++R ++++SWT MI+    NG   E L+LF  ++    +P   A   A+++ A L +L
Sbjct: 507 FESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSL 566

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
           + G+++H  L+  G+       ++L+ MYA CG VE +  +F+++   D + W +MI A 
Sbjct: 567 KKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINAN 626

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
           G HG G  AI L+++M  E ++PD ITFL +L AC+H+GL+ EG+R+FE M   Y + P 
Sbjct: 627 GMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPW 686

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
            +HYA  +DLL R+    EA   + S+P KPS+ +W ALL  C IH N +LG  AA++L 
Sbjct: 687 PEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKELL 746

Query: 615 QLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDD 674
           Q    ++G Y L+SN++A  GRW+D   VR  M+  G+KK PGCSWIEVDNK+H F+  D
Sbjct: 747 QSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARD 806

Query: 675 TAHPEAQAVYKYLEQLV-LEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLM 733
            +HP+   +Y  L Q   L  +K GY+  TKFV H++  ++K   L  HSE+LA+ +GL+
Sbjct: 807 KSHPQTDDIYLKLAQFTKLLGKKGGYIAQTKFVFHNVSEEEKTQMLYRHSERLALGYGLL 866

Query: 734 KLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             P G ++R+ KNLRIC DCH  FK  S+V  R +VVRD  RFHHF  G CSCGD+W
Sbjct: 867 VTPKGTSIRITKNLRICDDCHTFFKIASEVSQRALVVRDANRFHHFERGLCSCGDFW 923



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 140/503 (27%), Positives = 222/503 (44%), Gaps = 79/503 (15%)

Query: 50  EHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVA--RTTLIAAYSASDNVKLAREMFNKT 107
           EH  + L+D+      L   + L   + +  + A   T L+  Y    ++K A ++F++ 
Sbjct: 46  EHAHSLLLDLCVAVKALPQGQQLHARLLKSHLSAFLATKLLHMYEKCGSLKDAVKVFDE- 104

Query: 108 PLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEK 167
            +  R    +NAM+ A+  +     AIEL+++MR   V  D  TF SVL A   +  E +
Sbjct: 105 -MTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGAL-GESR 162

Query: 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDE--MPERDE 225
              ++H   VK G G F  V NALI++Y KC           +G AR +FD   M + D 
Sbjct: 163 LGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGD---------LGGARVLFDGIMMEKEDT 213

Query: 226 LSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTY 285
           +SW ++++ +V       A      M E VGVA N                      +T+
Sbjct: 214 VSWNSIISAHVTEGKCLEALSLFRRMQE-VGVASNT---------------------YTF 251

Query: 286 TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS-LPVNNALVTLYWKCGKVNEARDIF 344
            + +    +    +LG  +H   L++       F+ + V NAL+ +Y KCG++ +A  +F
Sbjct: 252 VAALQGVEDPSFVKLGMGIHGAALKSN-----HFADVYVANALIAMYAKCGRMEDAERVF 306

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
             M  RD VSWN +L                               SGL QN    + L 
Sbjct: 307 ASMLCRDYVSWNTLL-------------------------------SGLVQNELYRDALN 335

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
            F  M+    KP   +    I +    G L NG+++HA  + +G DS++  GN LI MYA
Sbjct: 336 YFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYA 395

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           +C  V+     F  M   D +SW  +IA   Q+     AI L+ ++  +G+  D +   +
Sbjct: 396 KCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGS 455

Query: 525 VLSACNHAGLVKEGRRYFETMHG 547
           VL AC  +GL  + R +   +HG
Sbjct: 456 VLRAC--SGL--KSRNFIREIHG 474



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 133/299 (44%), Gaps = 18/299 (6%)

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA--ILSAYVSA 365
           LL T    TP      ++ L+ L      + + + +  ++ +  L ++ A  +L  Y   
Sbjct: 33  LLSTHPLATPSRLEHAHSLLLDLCVAVKALPQGQQLHARLLKSHLSAFLATKLLHMYEKC 92

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425
           G + +A  +F+ M ER + +W  M+     +G   E ++L+ +MR+ G       F   +
Sbjct: 93  GSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVL 152

Query: 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN--TMPNVD 483
            +C  LG    G ++H   V  G+   +   NALI MY +CG +  A  +F+   M   D
Sbjct: 153 KACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKED 212

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFE 543
           +VSWN++I+A    G    A+ L+ +M + G+  +  TF+  L        VK G     
Sbjct: 213 TVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGM---- 268

Query: 544 TMHGPYGIPPGEDHYA------RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
              G +G     +H+A        I +  + G+  +A+ V  S+  +     W  LL+G
Sbjct: 269 ---GIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVS-WNTLLSG 323



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 2/138 (1%)

Query: 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALI 460
           + L L S   L      ++A +  +  C  + AL  G+QLHA+L+ S   + L+    L+
Sbjct: 29  QSLTLLSTHPLATPSRLEHAHSLLLDLCVAVKALPQGQQLHARLLKSHLSAFLA--TKLL 86

Query: 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI 520
            MY +CG ++ A  VF+ M      +WNAM+ A    G    AIELY++M   G+  D  
Sbjct: 87  HMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDAC 146

Query: 521 TFLTVLSACNHAGLVKEG 538
           TF +VL AC   G  + G
Sbjct: 147 TFPSVLKACGALGESRLG 164



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 151/397 (38%), Gaps = 105/397 (26%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + VHA+ I +G      I N LID+Y K   + +    F+ + + D+++ TT+IA Y+ 
Sbjct: 368 GKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQ 427

Query: 94  SDNVKLAREMFNKTPLK------------------------------------MRDTVFY 117
           ++    A  +F K  +K                                    + D +  
Sbjct: 428 NECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQ 487

Query: 118 NAMITAYS-------------------------------HNSNGHAAIELFRDMRRDDVK 146
           NA++  Y                                HN     A+ELF  +++ +++
Sbjct: 488 NAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQ 547

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           PD+    S LSA A +    K+  ++H  +++ G  L   + ++L+ +Y  C        
Sbjct: 548 PDSIAIISALSATANL-SSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACC-------- 598

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              +  +R++F  + +RD + WT+M+                +GM    G    AL    
Sbjct: 599 -GTVENSRKMFHSVKQRDLILWTSMINA--------------NGM-HGCGNEAIALFK-- 640

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL-LRTEAKPTPEFSLPVNN 325
                KM    +  D  T+ +++ AC++SGL   GK+    +    + +P PE       
Sbjct: 641 -----KMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHY----A 691

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSA 361
            +V L  +   + EA      MP +     W A+L A
Sbjct: 692 CMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGA 728


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 252/708 (35%), Positives = 381/708 (53%), Gaps = 76/708 (10%)

Query: 86  TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
           TL+  Y+   ++     +FN  P    + V +  +I   S ++    A+  F  MR   +
Sbjct: 137 TLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGI 196

Query: 146 KPDNFTFTSVLSALA---LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSP 202
            P++FTF+++L A A   L+ E +    Q+H  + K        V  AL+ +Y KC S  
Sbjct: 197 YPNHFTFSAILPACAHAALLSEGQ----QIHALIHKHCFLNDPFVATALLDMYAKCGS-- 250

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL 262
                  M  A  VFDEMP R+ +SW +M+ G+VKN     A          +GV     
Sbjct: 251 -------MLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRA----------IGV----- 288

Query: 263 ISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
                 RE+    L +  D+ + +SV+SACA       GKQVH  +++          + 
Sbjct: 289 -----FREV----LSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGL----VY 335

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
           V N+LV +Y KCG                               L ++A  LF    +R+
Sbjct: 336 VKNSLVDMYCKCG-------------------------------LFEDATKLFCGGGDRD 364

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
           +++W VMI G  +    E+    F  M  EG +P + +++    + A + AL  G  +H+
Sbjct: 365 VVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHS 424

Query: 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
            ++ +G+  +    ++L+TMY +CG +  A  VF      + V W AMI    QHG    
Sbjct: 425 HVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANE 484

Query: 503 AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562
           AI+L+E+ML EG++P+ ITF++VLSAC+H G + +G +YF +M   + I PG +HYA  +
Sbjct: 485 AIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMV 544

Query: 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622
           DLL R G+  EA   I+S+PF+P + +W ALL  C  H N+++G + AE+LF+L P + G
Sbjct: 545 DLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPG 604

Query: 623 TYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQA 682
            Y+LLSN+Y   G  ++A  VR+LM   GV+KE GCSWI+V N+  VF  +D +H   Q 
Sbjct: 605 NYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRSHSRTQE 664

Query: 683 VYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVR 742
           +Y  L++L   +++ GYV +T+F  + +E  + E +L  HSEKLA+AFGL+ LP G+ VR
Sbjct: 665 IYGMLQKLKELIKRRGYVAETQFATNSVEGSE-EQSLWCHSEKLALAFGLLVLPPGSPVR 723

Query: 743 VLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           + KNLR CGDCH   KF S++  REI+VRD  RFH F +G CSC DYW
Sbjct: 724 IKKNLRTCGDCHTVMKFASEIFQREIIVRDINRFHRFTNGSCSCMDYW 771



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 111/442 (25%), Positives = 195/442 (44%), Gaps = 77/442 (17%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D    T L+  Y+   ++ LA  +F++ P   R+ V +N+MI  +  N     AI +FR+
Sbjct: 234 DPFVATALLDMYAKCGSMLLAENVFDEMP--HRNLVSWNSMIVGFVKNKLYGRAIGVFRE 291

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           +    + PD  + +SVLSA A +VE +    Q+H ++VK G      V N+L+ +Y KC 
Sbjct: 292 VL--SLGPDQVSISSVLSACAGLVELDFG-KQVHGSIVKRGLVGLVYVKNSLVDMYCKC- 347

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                    L   A ++F    +RD ++W  M+ G  +    + A  +   M        
Sbjct: 348 --------GLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMI------- 392

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                    RE       ++ DE +Y+S+  A A+      G  +H+++L+T        
Sbjct: 393 ---------RE------GVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRI 437

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
           S    ++LVT+Y KCG + +A  +F +  E ++V W A+++ +   G  +EA        
Sbjct: 438 S----SSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEA-------- 485

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
                                  +KLF +M  EG  P    F   +++C+  G +++G +
Sbjct: 486 -----------------------IKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFK 522

Query: 440 LHAQL--VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQ 496
               +  VH+     L     ++ +  R G +E A     +MP   DS+ W A++ A G+
Sbjct: 523 YFNSMANVHN-IKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGK 581

Query: 497 HGNGARAIELYEQMLKEGILPD 518
           H N     E+ E++ K  + PD
Sbjct: 582 HANVEMGREVAERLFK--LEPD 601



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 137/298 (45%), Gaps = 43/298 (14%)

Query: 303 QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY 362
           Q+H+ L+ T        SL   N L+ LY KCG ++    +FN  P              
Sbjct: 118 QIHSQLVTTNNHA----SLANINTLLLLYAKCGSIHHTLLLFNTYPHPS----------- 162

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
                              N+++WT +I+ L+++    + L  F++MR  G  P  + F+
Sbjct: 163 ------------------TNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFS 204

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
             + +CA    L  G+Q+HA +    + +      AL+ MYA+CG +  A  VF+ MP+ 
Sbjct: 205 AILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHR 264

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
           + VSWN+MI    ++    RAI ++ ++L  G  PD+++  +VLSAC  AGLV+    + 
Sbjct: 265 NLVSWNSMIVGFVKNKLYGRAIGVFREVLSLG--PDQVSISSVLSAC--AGLVE--LDFG 318

Query: 543 ETMHGPY---GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
           + +HG     G+          +D+ C+ G F +A  +      +     W  ++ GC
Sbjct: 319 KQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDR-DVVTWNVMIMGC 375


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 251/766 (32%), Positives = 388/766 (50%), Gaps = 133/766 (17%)

Query: 109 LKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQ 168
           +K+   +F+N ++   + + +   +I LF+ M    V+ D++TF+               
Sbjct: 4   VKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFS--------------- 48

Query: 169 CMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARR----VFDEMPERD 224
                                        CVS  F S RS+ G  +     +     ER+
Sbjct: 49  -----------------------------CVSKSFSSLRSVHGGEQLHGFILKSGFGERN 79

Query: 225 ELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL---------KMLM 275
            +   +++  Y+KN  +D+AR+  D M+E   ++WN++I+GYV   L         +ML+
Sbjct: 80  SVG-NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLV 138

Query: 276 LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC- 334
             I++D  T  SV + CA+S L  LG+ VH+  ++        F     N L+ +Y KC 
Sbjct: 139 SGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFC----NTLLDMYSKCG 194

Query: 335 ------------------------------GKVNEARDIFNQMPER-------------- 350
                                         G   EA  +F +M E               
Sbjct: 195 DLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLN 254

Query: 351 -------------------------DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
                                    D+   NA++  Y   G + EA+ +F  MR ++++S
Sbjct: 255 CCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIIS 314

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEG-FKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
           W  +I G ++N Y  E L LF+ +  E  F P +   A  + +CA L A + GR++H  +
Sbjct: 315 WNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYI 374

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
           + +GY S     N+L+ MYA+CG +  A+ +F+ + + D VSW  MIA  G HG G  AI
Sbjct: 375 MRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAI 434

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
            L+ QM + GI  D I+F+++L AC+H+GLV EG R+F  M     I P  +HYA  +D+
Sbjct: 435 ALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDM 494

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624
           L R G   +A   I+++P  P A IW ALL GCRIH ++ L  + AE++F+L P + G Y
Sbjct: 495 LARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYY 554

Query: 625 VLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVY 684
           VL++N+YA   +W+   R+RK +  RG++K PGCSWIE+  +V++F+  D+++PE + + 
Sbjct: 555 VLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIE 614

Query: 685 KYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVL 744
            +L ++   M + GY P TK+ L D E  +KE AL  HSEKLA+A G++    G  +RV 
Sbjct: 615 AFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVT 674

Query: 745 KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KNLR+CGDCH   KFMSK+  REIV+RD  RFH F+DG CSC  +W
Sbjct: 675 KNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 720



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 173/388 (44%), Gaps = 78/388 (20%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           SL R+VH+  + + F   +   N L+D+Y K   L  A+ +F E+               
Sbjct: 162 SLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSD------------- 208

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                               R  V Y +MI  Y+       A++LF +M  + + PD +T
Sbjct: 209 --------------------RSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYT 248

Query: 152 FTSVLSALA--LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
            T+VL+  A   +++E K   ++H  + ++  G    V NAL+ +Y KC S         
Sbjct: 249 VTAVLNCCARYRLLDEGK---RVHEWIKENDLGFDIFVSNALMDMYAKCGS--------- 296

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           M  A  VF EM  +D +SW T++ GY KN Y + A    + + E                
Sbjct: 297 MQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEK-------------- 342

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS-LPVNNALV 328
                  R   DE T   V+ ACA+   F  G+++H Y++R        FS   V N+LV
Sbjct: 343 -------RFSPDERTVACVLPACASLSAFDKGREIHGYIMR-----NGYFSDRHVANSLV 390

Query: 329 TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR----ERNLL 384
            +Y KCG +  A  +F+ +  +DLVSW  +++ Y   G   EA +LF  MR    E + +
Sbjct: 391 DMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEI 450

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLE 412
           S+  ++   + +G  +EG + F+ MR E
Sbjct: 451 SFVSLLYACSHSGLVDEGWRFFNIMRHE 478



 Score = 92.4 bits (228), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 107/223 (47%), Gaps = 4/223 (1%)

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
           F+ ++    L W ++++ LA++G     + LF +M   G +   Y F+    S + L ++
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
             G QLH  ++ SG+    S GN+L+  Y +   V++A  VF+ M   D +SWN++I   
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
             +G   + + ++ QML  GI  D  T ++V + C  + L+  GR       G       
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSI--GVKACFSR 178

Query: 555 EDHYAR-FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           ED +    +D+  + G    AK V   +  + S   + +++AG
Sbjct: 179 EDRFCNTLLDMYSKCGDLDSAKAVFREMSDR-SVVSYTSMIAG 220



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 16/145 (11%)

Query: 28  PITSSLA-----RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIV 82
           P  +SL+     R +H +++ +G+    H+ N L+D+Y K   L+ A  LFD+I   D+V
Sbjct: 356 PACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLV 415

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMR------DTVFYNAMITAYSHNSNGHAAIEL 136
           + T +IA Y      K A  +FN    +MR      D + + +++ A SH+         
Sbjct: 416 SWTVMIAGYGMHGFGKEAIALFN----QMRQAGIEADEISFVSLLYACSHSGLVDEGWRF 471

Query: 137 FRDMRRD-DVKPDNFTFTSVLSALA 160
           F  MR +  ++P    +  ++  LA
Sbjct: 472 FNIMRHECKIEPTVEHYACIVDMLA 496


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/631 (37%), Positives = 361/631 (57%), Gaps = 44/631 (6%)

Query: 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS 227
           Q  Q H  ++ +G  L     N L+ V +        SS   +  A ++FD++P+ D   
Sbjct: 30  QIKQTHAHLITTGLILHPITANKLLKVLI-------ASSFGSLSYAHQLFDQIPKPDVFI 82

Query: 228 WTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEF---- 283
           + TM+  +                         A+I    H  +++ +  +++  F    
Sbjct: 83  YNTMIKAH-------------------------AVIPTSSHNSMRIFLSMVRVSGFLPNR 117

Query: 284 -TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARD 342
            T+  V  AC N      G+Q+  + ++       E +L V NA++ +Y   G V+EAR 
Sbjct: 118 YTFVFVFKACGNGLGVLEGEQIRVHAIKIGL----ESNLFVTNAMIRMYANWGLVDEARR 173

Query: 343 IFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG 402
           +F+   ++DL SWN ++  YV +G I  AK +F+ M ER+++SWT +I+G  Q G  +E 
Sbjct: 174 VFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEA 233

Query: 403 LKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITM 462
           L LF +M   G  P ++  A A+ +CA L AL+ GR +H  +  S    +     +L+ M
Sbjct: 234 LDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDM 293

Query: 463 YARCGVVEAANCVFNTM--PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI 520
           YA+CG ++ A  VF+      +    WNAMI     HG    AI+L+EQM  E + P+++
Sbjct: 294 YAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKV 353

Query: 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580
           TF+ +L+AC+H  LV+EGR YF++M   YGI P  +HY   +DLL R+G   EA++ + +
Sbjct: 354 TFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFN 413

Query: 581 LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA 640
           +P  P A IW ALL  CRIH +I+ G +  + + +L   H G +VLL+N+Y+  G+WD+A
Sbjct: 414 MPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEA 473

Query: 641 ARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYV 700
             VR+ +   G KK PGCS IE++   H FLV D +HP+ + +Y +L+++  +++  GYV
Sbjct: 474 KAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYV 533

Query: 701 PDTKFVLHDMESDQ-KEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKF 759
           P+   VL D++ ++ KE ALS HSEKLA+AFGL+  P G  +R++KNLR+C DCH A KF
Sbjct: 534 PEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVCADCHEATKF 593

Query: 760 MSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +SKV  REI+VRD  R+HHF+DG CSC DYW
Sbjct: 594 ISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 624



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 135/505 (26%), Positives = 215/505 (42%), Gaps = 97/505 (19%)

Query: 17  ASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSL--KLVYARTLFD 74
           ++QLQL    +  + +  +  HAH+I++G        N+L+ +   S    L YA  LFD
Sbjct: 14  SNQLQLFSLESCKSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFD 73

Query: 75  EIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAI 134
           +IP+PD+    T+I A+                           A+I   SHNS     +
Sbjct: 74  QIPKPDVFIYNTMIKAH---------------------------AVIPTSSHNS-----M 101

Query: 135 ELFRDM-RRDDVKPDNFTFTSVLSAL--ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
            +F  M R     P+ +TF  V  A    L V E +Q +++H   +   + LF  V NA+
Sbjct: 102 RIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQ-IRVHAIKIGLESNLF--VTNAM 158

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           I +Y         ++  L+  ARRVFD   ++D  SW  M+ GYV +  +  A+E  D M
Sbjct: 159 IRMY---------ANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEM 209

Query: 252 SENVGVAWNALISGYVH----REL-----KMLMLRIQLDEFTYTSVISACANSGLFRLGK 302
           SE   V+W  +I+GYV     +E      +ML      +EFT  S ++ACAN      G+
Sbjct: 210 SERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGR 269

Query: 303 QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV--SWNAILS 360
            +H Y+ ++E K           +L+ +Y KCG+++ A  +F+      L    WNA++ 
Sbjct: 270 WIHVYIDKSEIKMNERLL----ASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIG 325

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
            Y   G   EA  LFE                               QM++E   P    
Sbjct: 326 GYAMHGKSKEAIDLFE-------------------------------QMKVEKVSPNKVT 354

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVV-EAANCVFNT 478
           F   + +C+    +E GR     +  S G +  +     ++ +  R G++ EA   VFN 
Sbjct: 355 FVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNM 414

Query: 479 MPNVDSVSWNAMIAALGQHGNGARA 503
               D+  W A++ A   H +  R 
Sbjct: 415 PMAPDATIWGALLGACRIHKDIERG 439



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 142/352 (40%), Gaps = 38/352 (10%)

Query: 12  LANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYART 71
           L NRY          N +       +  H I  G +    + N +I +Y     +  AR 
Sbjct: 114 LPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARR 173

Query: 72  LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           +FD     D+ +   +I  Y  S  +  A+EMF++  +  RD V +  +I  Y       
Sbjct: 174 VFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDE--MSERDVVSWTTIIAGYVQVGCFK 231

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
            A++LF +M +    P+ FT  S L+A A +V  + Q   +H  + KS   +   +L +L
Sbjct: 232 EALDLFHEMLQTGPPPNEFTLASALAACANLVALD-QGRWIHVYIDKSEIKMNERLLASL 290

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDEL-SWTTMMTGYVKNDYLDAAREFLDG 250
           + +Y KC    F        AA+   DE   + ++  W  M+ GY  +     A +  + 
Sbjct: 291 LDMYAKCGEIDF--------AAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFE- 341

Query: 251 MSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
                                +M + ++  ++ T+ ++++AC++  L   G+    Y   
Sbjct: 342 ---------------------QMKVEKVSPNKVTFVALLNACSHGKLVEEGR---GYFKS 377

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARD-IFNQMPERDLVSWNAILSA 361
             +    E  +     +V L  + G + EA + +FN     D   W A+L A
Sbjct: 378 MASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGA 429


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 246/768 (32%), Positives = 397/768 (51%), Gaps = 74/768 (9%)

Query: 18  SQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYC--KSLKLVYARTLFDE 75
           S L+ C+    I       +H+  I +G       + ++I   C  +S  + YAR +FDE
Sbjct: 40  SLLETCNTMYEINQ-----IHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDE 94

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           IPQP +                                   +N MI  YS  +   + + 
Sbjct: 95  IPQPSVF---------------------------------IWNTMIKGYSRINCSESGVS 121

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           L++ M   ++KPD FTF  +L      +  +   + ++  V+         V    I ++
Sbjct: 122 LYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLF 181

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK-NDYLDAAREFLDGMSEN 254
             C          L+  AR++FD     + ++W  +++GY +   Y ++ R F++   + 
Sbjct: 182 SLC---------GLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKC 232

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
             V+ N++                     T   ++SAC+       GK ++   ++   +
Sbjct: 233 ECVSPNSV---------------------TLVLMLSACSKLKDLVGGKCIYNKYIK---E 268

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
              E +L + NAL+ ++  CG+++ AR +F++M  RD++SW +I++ + +   ID A+  
Sbjct: 269 GIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKY 328

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
           F+ M ER+ +SWT MI G  +    +E L LF  M++   KP ++     +T+CA LGAL
Sbjct: 329 FDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGAL 388

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
           E G      +  +   +    GNALI MY +CG VE A  +FN M   D  +W AMI  L
Sbjct: 389 ELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGL 448

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
             +G+G  A+ ++  ML+  + PD IT++ V+ AC H GLV +G+ +F  M   +GI P 
Sbjct: 449 ANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPN 508

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
             HY   +DLL RAG   EA +VI ++P KP++ +W +LL  CR+H N+ L   AA ++ 
Sbjct: 509 LTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEIL 568

Query: 615 QLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDD 674
           +L P +   YVLL N+YA   +W +   VRK+M +RG+KK PGCS +E++  V+ F+  D
Sbjct: 569 ELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGD 628

Query: 675 TAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMK 734
            +HP+++ +Y  LE +  ++   GY PDT  V  D+  + KE AL  HSEKLA+A+ L+ 
Sbjct: 629 KSHPQSKEIYAKLENMKQDLSNAGYSPDTSEVFLDVGEEDKETALYMHSEKLAIAYALIS 688

Query: 735 LPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDG 782
              G T+R++KNLR+C DCH+    +SKV  RE++VRD  RFHHFR G
Sbjct: 689 SGKGVTIRIVKNLRMCVDCHHMAMVVSKVYNRELIVRDKTRFHHFRHG 736



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 141/332 (42%), Gaps = 18/332 (5%)

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV------SAGLIDEAKSLFEAMRER 381
           ++L   C  + E   I +Q  +  L S +  L+  +       +G +  A+ +F+ + + 
Sbjct: 39  ISLLETCNTMYEINQIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQP 98

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL- 440
           ++  W  MI G ++    E G+ L+  M +   KP  + F   +       AL+ G+ L 
Sbjct: 99  SVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLL 158

Query: 441 -HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
            HA ++H   DS+L      I +++ CG+V  A  +F+     + V+WN +++   +   
Sbjct: 159 NHA-VIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKR 217

Query: 500 GARAIELYEQMLK--EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
              +  L+ +M K  E + P+ +T + +LSAC+    +  G+  +        + P    
Sbjct: 218 YEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLIL 277

Query: 558 YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
               ID+    G+   A+ V D +  +     W +++ G      IDL    A + F  M
Sbjct: 278 ENALIDMFASCGEMDAARGVFDEMKTRDVIS-WTSIVTGFANTCRIDL----ARKYFDQM 332

Query: 618 PHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
           P     YV  + M     R +    V  L RD
Sbjct: 333 PER--DYVSWTAMIDGYLRMNRFKEVLTLFRD 362


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/557 (39%), Positives = 328/557 (58%), Gaps = 45/557 (8%)

Query: 235 YVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTY 285
           Y K   LD AR   D M     V W ALI+G+              +ML L  Q + FT 
Sbjct: 133 YAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTL 192

Query: 286 TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFN 345
           +S++ A  +      G Q+HA+ L+   +     S+ V +ALV +Y +CG          
Sbjct: 193 SSLLKASGSEHGLDPGTQLHAFCLKYGYQS----SVYVGSALVDMYARCGH--------- 239

Query: 346 QMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKL 405
                                 +D A+  F+ M  ++ +SW  +ISG A+ G GE  L L
Sbjct: 240 ----------------------MDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHL 277

Query: 406 FSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465
             +M+ + F+P  + ++  +++CA +GALE G+ +HA ++ SG       GN L+ MYA+
Sbjct: 278 LWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAK 337

Query: 466 CGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTV 525
            G ++ A  VF+ +   D VSWN M+    QHG G   ++ +EQML+ GI P+ I+FL V
Sbjct: 338 AGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCV 397

Query: 526 LSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP 585
           L+AC+H+GL+ EG  YFE M   Y + P   HY  F+DLL R G    A+  I  +P +P
Sbjct: 398 LTACSHSGLLDEGLYYFELMK-KYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEP 456

Query: 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645
           +A +W ALL  CR+H N++LG+ AAE+ F+L PH +G  +LLSN+YA+ GRW D A+VRK
Sbjct: 457 TAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRK 516

Query: 646 LMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKF 705
           +M++ GVKK+P CSW+E++N VH+F+ +D  HP  + +    E++  +++++GYVPDT  
Sbjct: 517 MMKESGVKKQPACSWVEIENAVHLFVANDETHPRIKEIRGKWEEISGKIKEIGYVPDTSH 576

Query: 706 VLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVG 765
           VL  ++  ++E  L  HSEKLA+AF L+  P G+ +R+ KN+R+CGDCH A KF+SKVV 
Sbjct: 577 VLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDCHAAIKFVSKVVD 636

Query: 766 REIVVRDGKRFHHFRDG 782
           REI+VRD  RFH FRDG
Sbjct: 637 REIIVRDTNRFHRFRDG 653



 Score =  168 bits (426), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 163/337 (48%), Gaps = 47/337 (13%)

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           Y+ ++  C   G    G+ VHA+L+ +      +  L + N +V +Y KCG +++AR +F
Sbjct: 90  YSKLLKECTRLGKVEQGRIVHAHLVDSHFL---DNHLVLQNIIVNMYAKCGCLDDARRMF 146

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           ++MP +D+V+W                               T +I+G +QN    + L 
Sbjct: 147 DEMPTKDMVTW-------------------------------TALIAGFSQNNRPRDALL 175

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           LF QM   GF+P  +  +  + +      L+ G QLHA  +  GY SS+  G+AL+ MYA
Sbjct: 176 LFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYA 235

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           RCG ++AA   F+ MP    VSWNA+I+   + G G  A+ L  +M ++   P   T+ +
Sbjct: 236 RCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSS 295

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA----RFIDLLCRAGKFSEAKDVIDS 580
           VLSAC   G +++G+     M     I  G    A      +D+  +AG   +AK V D 
Sbjct: 296 VLSACASIGALEQGKWVHAHM-----IKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDR 350

Query: 581 LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           L  KP    W  +L GC  HG   LG +  ++  Q++
Sbjct: 351 L-VKPDVVSWNTMLTGCAQHG---LGKETLDRFEQML 383



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 127/502 (25%), Positives = 208/502 (41%), Gaps = 111/502 (22%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHII-NRLIDIYCKSLKLVYARTL 72
           N Y+  L+ C     +     R VHAH++ S F     ++ N ++++Y K   L  AR +
Sbjct: 88  NLYSKLLKECTRLGKVEQ--GRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRM 145

Query: 73  FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
           FDE+P  D+V  T LIA                                  +S N+    
Sbjct: 146 FDEMPTKDMVTWTALIA---------------------------------GFSQNNRPRD 172

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           A+ LF  M R   +P++FT +S+L A            Q+H   +K G      V +AL+
Sbjct: 173 ALLLFPQMLRLGFQPNHFTLSSLLKASG-SEHGLDPGTQLHAFCLKYGYQSSVYVGSALV 231

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
            +Y +C           M AA+  FD MP + E+SW  +++G+ +            G  
Sbjct: 232 DMYARC---------GHMDAAQLAFDGMPTKSEVSWNALISGHARK-----------GEG 271

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
           E+            +H   KM     Q   FTY+SV+SACA+ G    GK VHA+++++ 
Sbjct: 272 EHA-----------LHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSG 320

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
            K        + N L+ +Y K G +++A+ +F+++ + D+VSWN +L             
Sbjct: 321 LK----LIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTML------------- 363

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
                             +G AQ+G G+E L  F QM   G +P + +F   +T+C+  G
Sbjct: 364 ------------------TGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSG 405

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMI 491
            L+ G      +     +  +      + +  R G+++ A      MP    +  W A++
Sbjct: 406 LLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALL 465

Query: 492 AALGQHGN-------GARAIEL 506
            A   H N         RA EL
Sbjct: 466 GACRMHKNMELGVYAAERAFEL 487



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 118/264 (44%), Gaps = 18/264 (6%)

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY-DSSLSAGN 457
           G  GL     ++     P    ++  +  C  LG +E GR +HA LV S + D+ L   N
Sbjct: 68  GGTGLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQN 127

Query: 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
            ++ MYA+CG ++ A  +F+ MP  D V+W A+IA   Q+     A+ L+ QML+ G  P
Sbjct: 128 IIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQP 187

Query: 518 DRITFLTVLSACNHAGLVKEGRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEA 574
           +  T  ++L A      +  G +    +H     YG        +  +D+  R G    A
Sbjct: 188 NHFTLSSLLKASGSEHGLDPGTQ----LHAFCLKYGYQSSVYVGSALVDMYARCGHMDAA 243

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL-----MPHHAGTYVLLSN 629
           +   D +P K S   W AL++G   H     G  A   L+++      P H  TY  + +
Sbjct: 244 QLAFDGMPTK-SEVSWNALISG---HARKGEGEHALHLLWKMQRKNFQPTHF-TYSSVLS 298

Query: 630 MYANLGRWDDAARVRKLMRDRGVK 653
             A++G  +    V   M   G+K
Sbjct: 299 ACASIGALEQGKWVHAHMIKSGLK 322


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 251/753 (33%), Positives = 400/753 (53%), Gaps = 108/753 (14%)

Query: 50  EHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPL 109
           +H+ N+ ID          ART+FD++  PD+   T +I  Y+ +     A ++F + P+
Sbjct: 20  DHLRNQRID---------EARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPV 70

Query: 110 KMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC 169
           K  D V +N+MI      ++   A +LF +M      P+     SV+S            
Sbjct: 71  K--DVVSWNSMIKGCFDCADLTMARKLFDEM------PER----SVVS------------ 106

Query: 170 MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWT 229
                         +T+++N  +                 +  A  +F +MP RD  +W 
Sbjct: 107 --------------WTTMINGFLQF-------------GKIEVAEGLFYKMPFRDIAAWN 139

Query: 230 TMMTGYVKNDYL-DAAREFLDGMSENVGVAWNALISGY-----------VHRELKMLMLR 277
           +M+ GY  N  + D  R F +    NV ++W ++I G            + R++    + 
Sbjct: 140 SMIYGYCCNGRVEDGLRLFQEMPCRNV-ISWTSMIGGLDQHGRSEEALGLFRQMMGCGVE 198

Query: 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
           ++    TY  VI+ACAN+     G Q+HA++     K    F   ++ AL+T Y  C ++
Sbjct: 199 VKPTSSTYCCVITACANASALYQGVQIHAHVF----KLGYSFDAYISAALITFYANCKQM 254

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNG 397
            ++  +F+     ++V W A+++ Y   GL                            N 
Sbjct: 255 EDSLRVFHGKLHMNVVIWTALVTGY---GL----------------------------NC 283

Query: 398 YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN 457
             E+ LK+F +M  EG  P   +F  A+ SC GL AL+ GR++H   V  G ++ +  GN
Sbjct: 284 KHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGN 343

Query: 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
           +LI MY RCG +     +F  +   + VSWN++I    QHG G  A+  + QM++  + P
Sbjct: 344 SLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEP 403

Query: 518 DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577
           D ITF  +LSAC+H+G+ ++GR  F+            DHYA  +D+L R+GK  EA+++
Sbjct: 404 DEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEEL 463

Query: 578 IDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRW 637
           I ++P K ++ +W  LL+ C +H  +++  +AA+ +  L PH +  YVLLSN+YA+  RW
Sbjct: 464 IRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRW 523

Query: 638 DDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKL 697
            D +R+R+ M+ RG+ K+PG SWI +    + FL  D +HP +  +Y+ LE L  ++++L
Sbjct: 524 SDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKEL 583

Query: 698 GYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAF 757
           GYVPD +F LHD+E +QKE  LS HSE+LA+ FGL+    G+T+ V+KNLR+CGDCH+A 
Sbjct: 584 GYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGSTITVMKNLRVCGDCHSAI 643

Query: 758 KFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           K ++K+V R+I+VRD  RFHHF DG+CSCGDYW
Sbjct: 644 KLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 676


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 256/735 (34%), Positives = 396/735 (53%), Gaps = 85/735 (11%)

Query: 64  LKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVF-YNAMIT 122
           LK ++AR L   +     +  T LI A S+  ++  AR++F+  P   R  +F +NA+I 
Sbjct: 37  LKQIHARLLVLGLQFSGFLI-TKLIHASSSFGDITFARQVFDDLP---RPQIFPWNAIIR 92

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQM----HCTVVK 178
            YS N++   A+ ++ +M+   V PD+FTF  +L A + +       +QM    H  V +
Sbjct: 93  GYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSH-----LQMGRFVHAQVFR 147

Query: 179 SGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFD--EMPERDELSWTTMMTGYV 236
            G      V N LI++Y KC           +G+AR VF+   +PER  +SWT +++ Y 
Sbjct: 148 LGFDADVFVQNGLIALYAKC---------RRLGSARTVFEGLPLPERTIVSWTAIVSAYA 198

Query: 237 KNDYLDAAREFLDGMSE-NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
           +N     A E    M + +V   W AL+S               L+ FT       C   
Sbjct: 199 QNGEPMEALEIFSHMRKMDVKPDWVALVS--------------VLNAFT-------CLQD 237

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
              + G+ +HA +++   +  P+  + +N    T+Y KCG+V  A+ +F++M   +L+ W
Sbjct: 238 --LKQGRSIHASVVKMGLEIEPDLLISLN----TMYAKCGQVATAKILFDKMKSPNLILW 291

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           NA++S Y   G                               Y  E + +F +M  +  +
Sbjct: 292 NAMISGYAKNG-------------------------------YAREAIDMFHEMINKDVR 320

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P   +   AI++CA +G+LE  R ++  +  S Y   +   +ALI M+A+CG VE A  V
Sbjct: 321 PDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLV 380

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           F+   + D V W+AMI   G HG    AI LY  M + G+ P+ +TFL +L ACNH+G+V
Sbjct: 381 FDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMV 440

Query: 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
           +EG  +F  M   + I P + HYA  IDLL RAG   +A +VI  +P +P   +W ALL+
Sbjct: 441 REGWWFFNLM-ADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLS 499

Query: 596 GCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKE 655
            C+ H +++LG  AA+QLF + P + G YV LSN+YA    WD  A VR  M+++G+ K+
Sbjct: 500 ACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKD 559

Query: 656 PGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQK 715
            GCSW+EV  ++  F V D +HP  + + + +E +   +++ G+V +    LHD+  ++ 
Sbjct: 560 VGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEA 619

Query: 716 EYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKR 775
           E  L +HSE++A+A+GL+  P G  +R+ KNLR C +CH A K +SK+V REIVVRD  R
Sbjct: 620 EETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNR 679

Query: 776 FHHFRDGKCSCGDYW 790
           FHHF+DG CSCGDYW
Sbjct: 680 FHHFKDGVCSCGDYW 694



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 139/331 (41%), Gaps = 74/331 (22%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            RS+HA ++  G +    ++  L  +Y K  ++  A+ LFD++  P+++    +I+ Y+ 
Sbjct: 241 GRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYA- 299

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA--AIELFRDMRRDDVKPDNFT 151
                                              NG+A  AI++F +M   DV+PD  +
Sbjct: 300 ----------------------------------KNGYAREAIDMFHEMINKDVRPDTIS 325

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
            TS +SA A +   E Q   M+  V +S       + +ALI ++ KC S         + 
Sbjct: 326 ITSAISACAQVGSLE-QARSMYEYVGRSDYRDDVFISSALIDMFAKCGS---------VE 375

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            AR VFD   +RD + W+ M+ GY            L G +      + A+  G VH   
Sbjct: 376 GARLVFDRTLDRDVVVWSAMIVGY-----------GLHGRAREAISLYRAMERGGVHP-- 422

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                    ++ T+  ++ AC +SG+ R G      +   +  P  +    V    + L 
Sbjct: 423 ---------NDVTFLGLLMACNHSGMVREGWWFFNLMADHKINPQQQHYACV----IDLL 469

Query: 332 WKCGKVNEARDIFNQMPERDLVS-WNAILSA 361
            + G +++A ++   MP +  V+ W A+LSA
Sbjct: 470 GRAGHLDQAYEVIKCMPVQPGVTVWGALLSA 500


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 256/735 (34%), Positives = 396/735 (53%), Gaps = 85/735 (11%)

Query: 64  LKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVF-YNAMIT 122
           LK ++AR L   +     +  T LI A S+  ++  AR++F+  P   R  +F +NA+I 
Sbjct: 37  LKQIHARLLVLGLQFSGFLI-TKLIHASSSFGDITFARQVFDDLP---RPQIFPWNAIIR 92

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQM----HCTVVK 178
            YS N++   A+ ++ +M+   V PD+FTF  +L A + +       +QM    H  V +
Sbjct: 93  GYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSH-----LQMGRFVHAQVFR 147

Query: 179 SGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFD--EMPERDELSWTTMMTGYV 236
            G      V N LI++Y KC           +G+AR VF+   +PER  +SWT +++ Y 
Sbjct: 148 LGFDADVFVQNGLIALYAKC---------RRLGSARTVFEGLPLPERTIVSWTAIVSAYA 198

Query: 237 KNDYLDAAREFLDGMSE-NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
           +N     A E    M + +V   W AL+S               L+ FT       C   
Sbjct: 199 QNGEPMEALEIFSQMRKMDVKPDWVALVS--------------VLNAFT-------CLQD 237

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
              + G+ +HA +++   +  P+  + +N    T+Y KCG+V  A+ +F++M   +L+ W
Sbjct: 238 --LKQGRSIHASVVKMGLEIEPDLLISLN----TMYAKCGQVATAKILFDKMKSPNLILW 291

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           NA++S Y   G                               Y  E + +F +M  +  +
Sbjct: 292 NAMISGYAKNG-------------------------------YAREAIDMFHEMINKDVR 320

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P   +   AI++CA +G+LE  R ++  +  S Y   +   +ALI M+A+CG VE A  V
Sbjct: 321 PDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLV 380

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           F+   + D V W+AMI   G HG    AI LY  M + G+ P+ +TFL +L ACNH+G+V
Sbjct: 381 FDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMV 440

Query: 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
           +EG  +F  M   + I P + HYA  IDLL RAG   +A +VI  +P +P   +W ALL+
Sbjct: 441 REGWWFFNRM-ADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLS 499

Query: 596 GCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKE 655
            C+ H +++LG  AA+QLF + P + G YV LSN+YA    WD  A VR  M+++G+ K+
Sbjct: 500 ACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKD 559

Query: 656 PGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQK 715
            GCSW+EV  ++  F V D +HP  + + + +E +   +++ G+V +    LHD+  ++ 
Sbjct: 560 VGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEA 619

Query: 716 EYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKR 775
           E  L +HSE++A+A+GL+  P G  +R+ KNLR C +CH A K +SK+V REIVVRD  R
Sbjct: 620 EETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNR 679

Query: 776 FHHFRDGKCSCGDYW 790
           FHHF+DG CSCGDYW
Sbjct: 680 FHHFKDGVCSCGDYW 694



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 139/331 (41%), Gaps = 74/331 (22%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            RS+HA ++  G +    ++  L  +Y K  ++  A+ LFD++  P+++    +I+ Y+ 
Sbjct: 241 GRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYA- 299

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA--AIELFRDMRRDDVKPDNFT 151
                                              NG+A  AI++F +M   DV+PD  +
Sbjct: 300 ----------------------------------KNGYAREAIDMFHEMINKDVRPDTIS 325

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
            TS +SA A +   E Q   M+  V +S       + +ALI ++ KC S         + 
Sbjct: 326 ITSAISACAQVGSLE-QARSMYEYVGRSDYRDDVFISSALIDMFAKCGS---------VE 375

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            AR VFD   +RD + W+ M+ GY            L G +      + A+  G VH   
Sbjct: 376 GARLVFDRTLDRDVVVWSAMIVGY-----------GLHGRAREAISLYRAMERGGVHP-- 422

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                    ++ T+  ++ AC +SG+ R G      +   +  P  +    V    + L 
Sbjct: 423 ---------NDVTFLGLLMACNHSGMVREGWWFFNRMADHKINPQQQHYACV----IDLL 469

Query: 332 WKCGKVNEARDIFNQMPERDLVS-WNAILSA 361
            + G +++A ++   MP +  V+ W A+LSA
Sbjct: 470 GRAGHLDQAYEVIKCMPVQPGVTVWGALLSA 500


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/589 (38%), Positives = 334/589 (56%), Gaps = 48/589 (8%)

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           AR +F+ + +R+ +SW  ++ G +KN  L +ARE  D M       WNA+++G  +  L 
Sbjct: 96  ARHLFEGISKRNVMSWNILIGGCIKNGDLGSARELFDKMPTRNVATWNAMVAGLTNVGLD 155

Query: 273 MLMLRIQL---------DEFTYTSVISACANSGLFRL--GKQVHAYLLRTEAKPTPEFSL 321
              L+  L         DEF   SV   CA  GL  +  G+QVHAY++R+      +  +
Sbjct: 156 EDSLQFFLAMRREGMHPDEFGLGSVFRCCA--GLLDVVSGRQVHAYVVRSGM----DSDM 209

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
            V N+L  +Y +CG + E   +   +P   +VS+N                         
Sbjct: 210 CVGNSLAHMYMRCGCLAEGEAVLRALPSLTIVSFNTT----------------------- 246

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
                   I+G  QNG  E  L+ FS MR     P    F  AI+ C+ L AL  G+Q+H
Sbjct: 247 --------IAGRTQNGDSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQVH 298

Query: 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGA 501
           AQ++ +G D  +    +L+ MY+RCG +  +  V++    +D    +AMI+A G HG G 
Sbjct: 299 AQVIKAGVDKVVPVITSLVHMYSRCGCLGDSERVYDGYCGLDLFLLSAMISACGFHGQGH 358

Query: 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF 561
           +A+EL++QM+  G  P+ +TFL +L AC+H+GL  EG  +FE M   YG  P   HY   
Sbjct: 359 KAVELFKQMMNGGAEPNEVTFLALLYACSHSGLKDEGLEFFELMTKTYGFQPSVKHYNCI 418

Query: 562 IDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621
           +DLL R+G   EA+ +I S+P +    IW+ LL+ C+   N D+  + AE++ +  P  +
Sbjct: 419 VDLLGRSGCLDEAEALILSMPVRADGVIWKTLLSACKTQKNFDMAERIAERVIESDPRDS 478

Query: 622 GTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQ 681
             YVLLSN+ A   RW D   VRK+MR++ ++KEPG SW+E   +VH F   D +HP   
Sbjct: 479 APYVLLSNIRATSKRWGDVTEVRKIMREKDIRKEPGVSWVEHKGQVHQFCTGDKSHPRQG 538

Query: 682 AVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATV 741
            + +YL++++ ++R+ GY PD   V HDME ++KE +L+ HSEKLA+AF  + LP G  +
Sbjct: 539 EIDEYLKEMMGKIRQCGYAPDMTMVFHDMEDEEKEVSLTHHSEKLAIAFAFLNLPEGVPI 598

Query: 742 RVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           RV+KNLR+C DCH A K +S+V GREIVVRD  RFHHFRDG+CSCGDYW
Sbjct: 599 RVMKNLRVCDDCHVAIKLISQVTGREIVVRDVSRFHHFRDGRCSCGDYW 647



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 113/482 (23%), Positives = 202/482 (41%), Gaps = 71/482 (14%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R +HA   +SG        N L+  Y     L  AR LF+ I + ++++   LI    
Sbjct: 60  LLRQLHAFAATSGAAADRFTTNNLLLAYADLGDLPTARHLFEGISKRNVMSWNILIGGCI 119

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
            + ++  ARE+F+K P   R+   +NAM+   ++      +++ F  MRR+ + PD F  
Sbjct: 120 KNGDLGSARELFDKMP--TRNVATWNAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFGL 177

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            SV    A +++      Q+H  VV+SG      V N+L  +Y++C           +  
Sbjct: 178 GSVFRCCAGLLDVVSG-RQVHAYVVRSGMDSDMCVGNSLAHMYMRC---------GCLAE 227

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
              V   +P    +S+ T + G  +N   + A E+   M   V VA              
Sbjct: 228 GEAVLRALPSLTIVSFNTTIAGRTQNGDSEGALEYFS-MMRGVEVA-------------- 272

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                   D  T+ S IS C++      G+QVHA +++          +PV  +LV +Y 
Sbjct: 273 -------PDVVTFVSAISCCSDLAALAQGQQVHAQVIKAGVDKV----VPVITSLVHMYS 321

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           +CG + ++  +++     DL     +LSA                           MIS 
Sbjct: 322 RCGCLGDSERVYDGYCGLDLF----LLSA---------------------------MISA 350

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDS 451
              +G G + ++LF QM   G +P +  F   + +C+  G  + G +    +  + G+  
Sbjct: 351 CGFHGQGHKAVELFKQMMNGGAEPNEVTFLALLYACSHSGLKDEGLEFFELMTKTYGFQP 410

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQM 510
           S+   N ++ +  R G ++ A  +  +MP   D V W  +++A     N   A  + E++
Sbjct: 411 SVKHYNCIVDLLGRSGCLDEAEALILSMPVRADGVIWKTLLSACKTQKNFDMAERIAERV 470

Query: 511 LK 512
           ++
Sbjct: 471 IE 472


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/627 (37%), Positives = 351/627 (55%), Gaps = 46/627 (7%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           ++H  ++KSG          LI  Y KC          L+  A ++FD +P++D ++W T
Sbjct: 29  KLHAQIIKSGLNHHHPFPKTLIDAYGKC---------GLLKDALKLFDALPQQDHVAWAT 79

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR----ELKMLMLRIQLDEFTYT 286
           +++                        A N  +S   H+     L +L   +Q D F ++
Sbjct: 80  VLS------------------------ACN--LSNLPHKAFSISLPILHEGLQPDHFVFS 113

Query: 287 SVISACANSGLF--RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           S+I ACAN G    +LGKQ+HA  L +   P  E  + V ++LV +Y K    +  R +F
Sbjct: 114 SLIKACANLGSVHVKLGKQLHARFLLS---PFFEDDV-VKSSLVDMYAKFELPDYGRAVF 169

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           + + E   +SW A++S Y  +G   EA  LF     +NL +WT +ISGL Q+G   + L 
Sbjct: 170 DSIFELSSISWTAMISGYARSGRKLEALELFRESPFKNLYAWTALISGLVQSGNANDALY 229

Query: 405 LFSQMRLEGFKPCD-YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
           LF +MR EG    D    +  + +CA     E G+Q+H  ++  GY+S L   NAL+ MY
Sbjct: 230 LFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQVHCVVITLGYESCLFISNALVDMY 289

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
           A+C  V AA  +F  M   D VSW ++I    QHG    A+ LY+ M+  G+ P+ +TF+
Sbjct: 290 AKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAEEALTLYDDMVLAGVKPNEVTFV 349

Query: 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF 583
            ++ AC+H GLV +GR  F++M   +GI P   HY   +DL  R+G   EA+++I ++P 
Sbjct: 350 GLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIRTMPV 409

Query: 584 KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARV 643
           KP  P W ALL+ C+ HGN  + ++ A+ L  L P    +Y+LLSN+YA  G W++ + V
Sbjct: 410 KPDEPTWAALLSACKHHGNTKMAVRIADHLLDLKPEDPSSYILLSNIYAGAGMWENVSMV 469

Query: 644 RKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDT 703
           RKLM  + VKK PG S +++  +  VF   + + P    +   + +L  EMR+ GYVPDT
Sbjct: 470 RKLMAVKEVKKVPGYSCVDLGREFQVFHAGEASQPMKDEILGLMTKLDSEMRRRGYVPDT 529

Query: 704 KFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKV 763
             VL DM+  +KE  L  HSE+LA+A+GL+K   G T+R++KNLR+CGDCH   K +S +
Sbjct: 530 SSVLLDMDQQEKERQLFWHSERLALAYGLLKAVPGTTIRIVKNLRVCGDCHTVLKLISAI 589

Query: 764 VGREIVVRDGKRFHHFRDGKCSCGDYW 790
             REI VRD KR+HHF+DGKCSC D+W
Sbjct: 590 TSREIYVRDVKRYHHFKDGKCSCNDFW 616



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 146/509 (28%), Positives = 222/509 (43%), Gaps = 97/509 (19%)

Query: 18  SQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP 77
           SQL     +NP    +A+ +HA +I SG          LID Y K   L  A  LFD +P
Sbjct: 14  SQLFSLGRKNPF---IAKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALP 70

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           Q D VA  T+++A + S+            P                      H A  + 
Sbjct: 71  QQDHVAWATVLSACNLSN-----------LP----------------------HKAFSIS 97

Query: 138 RDMRRDDVKPDNFTFTSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
             +  + ++PD+F F+S++ A A L     K   Q+H   + S       V ++L+ +Y 
Sbjct: 98  LPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYA 157

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND-YLDAAREFLDGMSENV 255
           K           L    R VFD + E   +SWT M++GY ++   L+A   F +   +N+
Sbjct: 158 KF---------ELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFKNL 208

Query: 256 GVAWNALISG-----------YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304
             AW ALISG           Y+  E++   + I  D    +SV+ ACANS +  LGKQV
Sbjct: 209 -YAWTALISGLVQSGNANDALYLFVEMRREGVSIA-DPLVLSSVVGACANSAVRELGKQV 266

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVS 364
           H  ++        E  L ++NALV +Y KC  V  A+ IF +M  +D+VSW +I+     
Sbjct: 267 HCVVITLGY----ESCLFISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQ 322

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
            GL                                EE L L+  M L G KP +  F G 
Sbjct: 323 HGL-------------------------------AEEALTLYDDMVLAGVKPNEVTFVGL 351

Query: 425 ITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NV 482
           I +C+ +G +  GR L   +V   G   SL     L+ +++R G ++ A  +  TMP   
Sbjct: 352 IYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVKP 411

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQML 511
           D  +W A+++A   HGN   A+ + + +L
Sbjct: 412 DEPTWAALLSACKHHGNTKMAVRIADHLL 440



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 164/349 (46%), Gaps = 41/349 (11%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           ++S ++ C     +   L + +HA  + S F   + + + L+D+Y K     Y R +FD 
Sbjct: 112 FSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFELPDYGRAVFDS 171

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           I +   ++ T +I+ Y+ S     A E+F ++P K  +   + A+I+    + N + A+ 
Sbjct: 172 IFELSSISWTAMISGYARSGRKLEALELFRESPFK--NLYAWTALISGLVQSGNANDALY 229

Query: 136 LFRDMRRDDVK-PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
           LF +MRR+ V   D    +SV+ A A     E    Q+HC V+  G      + NAL+ +
Sbjct: 230 LFVEMRREGVSIADPLVLSSVVGACANSAVRELG-KQVHCVVITLGYESCLFISNALVDM 288

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           Y KC         S + AA+ +F EM  +D +SWT+++ G  ++   + A    D     
Sbjct: 289 YAKC---------SDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAEEALTLYD----- 334

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA- 313
                             M++  ++ +E T+  +I AC++ GL   G+ +   ++     
Sbjct: 335 -----------------DMVLAGVKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFGI 377

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
           +P    SL     L+ L+ + G ++EA ++   MP + D  +W A+LSA
Sbjct: 378 RP----SLQHYTCLLDLFSRSGHLDEAENLIRTMPVKPDEPTWAALLSA 422



 Score = 82.8 bits (203), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 110/236 (46%), Gaps = 45/236 (19%)

Query: 283 FTYTSVISACANSGLFRLG-------KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG 335
           F+++  + A   S LF LG       K++HA ++++          P    L+  Y KCG
Sbjct: 3   FSHSPTVLAL-KSQLFSLGRKNPFIAKKLHAQIIKSGL----NHHHPFPKTLIDAYGKCG 57

Query: 336 KVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQ 395
            + +A  +F+ +P++D V+W  +LSA   + L  +A S+   +                 
Sbjct: 58  LLKDALKLFDALPQQDHVAWATVLSACNLSNLPHKAFSISLPILH--------------- 102

Query: 396 NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA--LENGRQLHAQLVHSGYDSSL 453
                           EG +P  + F+  I +CA LG+  ++ G+QLHA+ + S +    
Sbjct: 103 ----------------EGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDD 146

Query: 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
              ++L+ MYA+  + +    VF+++  + S+SW AMI+   + G    A+EL+ +
Sbjct: 147 VVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRE 202



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 84/165 (50%), Gaps = 10/165 (6%)

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
            ++LHAQ++ SG +        LI  Y +CG+++ A  +F+ +P  D V+W  +++A   
Sbjct: 27  AKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNL 86

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL--VKEGRRYFETMHGPYGIPP- 553
                +A  +   +L EG+ PD   F +++ AC + G   VK G++    +H  + + P 
Sbjct: 87  SNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQ----LHARFLLSPF 142

Query: 554 GEDHYAR--FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
            ED   +   +D+  +       + V DS+ F+ S+  W A+++G
Sbjct: 143 FEDDVVKSSLVDMYAKFELPDYGRAVFDSI-FELSSISWTAMISG 186


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 251/753 (33%), Positives = 400/753 (53%), Gaps = 108/753 (14%)

Query: 50  EHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPL 109
           +H+ N+ ID          ART+FD++  PD+   T +I  Y+ +     A ++F + P+
Sbjct: 4   DHLRNQRID---------EARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPV 54

Query: 110 KMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC 169
           K  D V +N+MI      ++   A +LF +M      P+     SV+S            
Sbjct: 55  K--DVVSWNSMIKGCFDCADLTMARKLFDEM------PER----SVVS------------ 90

Query: 170 MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWT 229
                         +T+++N  +                 +  A  +F +MP RD  +W 
Sbjct: 91  --------------WTTMINGFLQF-------------GKIEVAEGLFYKMPFRDIAAWN 123

Query: 230 TMMTGYVKNDYL-DAAREFLDGMSENVGVAWNALISGY-----------VHRELKMLMLR 277
           +M+ GY  N  + D  R F +    NV ++W ++I G            + R++    + 
Sbjct: 124 SMIYGYCCNGRVEDGLRLFQEMPCRNV-ISWTSMIGGLDQHGRSEEALGLFRQMMGCGVE 182

Query: 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
           ++    TY  VI+ACAN+     G Q+HA++     K    F   ++ AL+T Y  C ++
Sbjct: 183 VKPTSSTYCCVITACANASALYQGVQIHAHVF----KLGYSFDAYISAALITFYANCKQM 238

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNG 397
            ++  +F+     ++V W A+++ Y   GL                            N 
Sbjct: 239 EDSLRVFHGKLHMNVVIWTALVTGY---GL----------------------------NC 267

Query: 398 YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN 457
             E+ LK+F +M  EG  P   +F  A+ SC GL AL+ GR++H   V  G ++ +  GN
Sbjct: 268 KHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGN 327

Query: 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
           +LI MY RCG +     +F  +   + VSWN++I    QHG G  A+  + QM++  + P
Sbjct: 328 SLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEP 387

Query: 518 DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577
           D ITF  +LSAC+H+G+ ++GR  F+            DHYA  +D+L R+GK  EA+++
Sbjct: 388 DEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEEL 447

Query: 578 IDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRW 637
           I ++P K ++ +W  LL+ C +H  +++  +AA+ +  L PH +  YVLLSN+YA+  RW
Sbjct: 448 IRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRW 507

Query: 638 DDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKL 697
            D +R+R+ M+ RG+ K+PG SWI +    + FL  D +HP +  +Y+ LE L  ++++L
Sbjct: 508 SDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKEL 567

Query: 698 GYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAF 757
           GYVPD +F LHD+E +QKE  LS HSE+LA+ FGL+    G+T+ V+KNLR+CGDCH+A 
Sbjct: 568 GYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGSTITVMKNLRVCGDCHSAI 627

Query: 758 KFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           K ++K+V R+I+VRD  RFHHF DG+CSCGDYW
Sbjct: 628 KLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 660



 Score = 43.1 bits (100), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 108/247 (43%), Gaps = 29/247 (11%)

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           +IT + R   ++ A  VF+ +   D   +  MI    ++     A++L+ +M     + D
Sbjct: 1   MITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEM----PVKD 56

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVI 578
            +++ +++  C     +   R+ F+ M     +      +   I+   + GK   A+ + 
Sbjct: 57  VVSWNSMIKGCFDCADLTMARKLFDEMPERSVVS-----WTTMINGFLQFGKIEVAEGLF 111

Query: 579 DSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL---G 635
             +PF+  A  W +++ G   +G ++ G+    +LFQ MP      +  ++M   L   G
Sbjct: 112 YKMPFRDIAA-WNSMIYGYCCNGRVEDGL----RLFQEMP--CRNVISWTSMIGGLDQHG 164

Query: 636 RWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMR 695
           R ++A  + + M   GV+ +P  S          +    TA   A A+Y+ + Q+   + 
Sbjct: 165 RSEEALGLFRQMMGCGVEVKPTSS---------TYCCVITACANASALYQGV-QIHAHVF 214

Query: 696 KLGYVPD 702
           KLGY  D
Sbjct: 215 KLGYSFD 221


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/621 (38%), Positives = 357/621 (57%), Gaps = 55/621 (8%)

Query: 170 MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWT 229
           +  H   +     L +S+ +  +  Y   V++   S R L  +AR +FD MP RD  SW+
Sbjct: 70  LSSHPATLPDALALLSSLPSTDVCSYNTLVAALGRSPRGL-ASARALFDRMPRRDHFSWS 128

Query: 230 TMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVI 289
            +++ + ++    AA      M    G A                      +EFT +S +
Sbjct: 129 AIVSAHARHGQPRAALAIYRRMLREPGSAGVD-------------------NEFTASSAL 169

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
           +A   +   R G+++H +++R       +    V +AL  +Y KCG+V++AR +F++MP 
Sbjct: 170 AAATAARCARAGRELHCHVVRRGI----DADAVVWSALADMYAKCGRVDDARSVFDRMPV 225

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
           RD+VSW A++  Y            F+A R+                    EG +LF +M
Sbjct: 226 RDVVSWTAMVERY------------FDARRD-------------------GEGFRLFVRM 254

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
              G +P ++ +AG + +CA   + + G+Q+H ++  S    S  A +AL+ MY++ G +
Sbjct: 255 LRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFAESALVHMYSKYGDM 314

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
             A  VF  MP +D VSW AMI+   Q+G    A+  ++ +L+ G  PD +TF+ VLSAC
Sbjct: 315 GTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCRPDHVTFVGVLSAC 374

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
            HAGLV +G   F ++   YGI    DHYA  IDLL R+G F  A+++I+++  KP+  +
Sbjct: 375 AHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRSGLFERAEEMINTMSVKPNKFL 434

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
           W +LL GCRIH N+ L   AAE LF++ P +  TYV L+N+YA++G +D+    R++M  
Sbjct: 435 WASLLGGCRIHKNVRLARWAAEALFEIEPENPATYVTLANIYASVGLFDEVENTRRIMEL 494

Query: 650 RGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHD 709
           +G+ K P  SWIEV  ++HVFLV D  HP+A+ VY  L++L ++MR+ GYV DT FVLHD
Sbjct: 495 KGITKMPASSWIEVGTRMHVFLVGDKLHPQAEQVYALLKKLYVKMREEGYVADTGFVLHD 554

Query: 710 MESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIV 769
           +E +QK+  +  HSE+LAVAFG++  P GA ++V KNLRICGDCH   K +SK+V REI+
Sbjct: 555 VEDEQKQQDIGYHSERLAVAFGIIATPKGAPIKVFKNLRICGDCHTTIKLISKIVQREII 614

Query: 770 VRDGKRFHHFRDGKCSCGDYW 790
           VRD  RFHHF++G CSC DYW
Sbjct: 615 VRDSNRFHHFKNGSCSCRDYW 635



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 34/225 (15%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D V  + L   Y+    V  AR +F++ P+  RD V + AM+  Y           LF  
Sbjct: 196 DAVVWSALADMYAKCGRVDDARSVFDRMPV--RDVVSWTAMVERYFDARRDGEGFRLFVR 253

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M R  ++P+ FT+  VL A A    E K   Q+H  + KS  G      +AL+ +Y K  
Sbjct: 254 MLRSGIQPNEFTYAGVLRACAEFTSE-KLGKQVHGRMTKSRAGDSCFAESALVHMYSKYG 312

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                     MG A RVF  MP+ D +SWT M++GY +N   D A  + D +        
Sbjct: 313 D---------MGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDML-------- 355

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304
             L SG             + D  T+  V+SACA++GL   G  +
Sbjct: 356 --LRSG------------CRPDHVTFVGVLSACAHAGLVDKGLSI 386


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 249/732 (34%), Positives = 391/732 (53%), Gaps = 68/732 (9%)

Query: 27  NPITSSLA--RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVAR 84
           N  T+SL+  R  HAH++ +G     H+  +L+  Y  ++    A  + D +P+P++ + 
Sbjct: 23  NSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSF 82

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           +TLI A+S           F++                        H A+  F  M    
Sbjct: 83  STLIYAFSK----------FHQF-----------------------HHALSTFSQMLTRG 109

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           + PDN    S + A A +    K   Q+H     SG    + V ++L+ +Y+KC      
Sbjct: 110 LMPDNRVLPSAVKACAGL-SALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKC------ 162

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD-----GMSENVGVAW 259
              + +  A RVFD M E D +SW+ ++  Y +   +D A+         G+  N+ ++W
Sbjct: 163 ---NQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNL-ISW 218

Query: 260 NALISGYVHR----ELKMLMLRIQLDEF-----TYTSVISACANSGLFRLGKQVHAYLLR 310
           N +I+G+ H     E  ++ L + L  F     T +SV+ A  +     +G  +H Y+++
Sbjct: 219 NGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIK 278

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
                       V++AL+ +Y KC   +E   +F+QM   D+ S NA +      G ++ 
Sbjct: 279 QGLVSDK----CVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVES 334

Query: 371 AKSLFEAMR----ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
           +  LF  ++    E N++SWT MI+  +QNG   E L+LF +M++ G KP        + 
Sbjct: 335 SLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLP 394

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
           +C  + AL +G+  H   +  G  + +  G+ALI MYA+CG ++A+   F+ +P  + V 
Sbjct: 395 ACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVC 454

Query: 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546
           WNA+IA    HG    A+E+++ M + G  PD I+F  VLSAC+ +GL +EG  YF +M 
Sbjct: 455 WNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMS 514

Query: 547 GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLG 606
             YGI    +HYA  + LL RAGK  +A  +I  +P  P A +W ALL+ CR+H N+ LG
Sbjct: 515 SKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLG 574

Query: 607 IQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNK 666
             AAE+LF+L P + G Y+LLSN+YA+ G W++  RVR +M+++G++K PGCSWIEV NK
Sbjct: 575 EVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNK 634

Query: 667 VHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKL 726
           VH+ L  D +HP+   + + L++L +EM+KLGY P+  FVL D+E   KE  L  HSEKL
Sbjct: 635 VHMLLAGDKSHPQMTQIIENLDKLSMEMKKLGYFPEINFVLQDVEEQDKEQILCGHSEKL 694

Query: 727 AVAFGLMKLPGG 738
           AV FGL+  P G
Sbjct: 695 AVVFGLLNTPPG 706


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/679 (35%), Positives = 380/679 (55%), Gaps = 39/679 (5%)

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRR-DDVKPDNFTFTSVLSALALIVEEEKQCMQM 172
           T F N ++   S +S     I L+ ++R  +    D F+F S+L A++  V      +++
Sbjct: 85  THFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSK-VSAFNHGLEI 143

Query: 173 HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMM 232
           H    K G      +   LI++Y  C        R +M A R +FD+M   D ++W  ++
Sbjct: 144 HGLASKLGFVDDPFIQTGLIAMYASC--------RRIMDA-RLLFDKMCHPDAVAWNMII 194

Query: 233 TGYVKN-DYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
            GY +N  Y DA R F D  S +                       ++ D     +V+SA
Sbjct: 195 DGYCQNGHYDDALRLFEDMRSSD-----------------------MKPDSVILCTVLSA 231

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           C ++G    G+ +H ++              +  AL+ +Y  CG ++ AR I++ +  + 
Sbjct: 232 CGHAGNLSYGRTIHEFVKDNGYAIDSH----LQTALINMYANCGAMDLARKIYDGLSSKH 287

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
           L+   A+LS Y   G++ +A+ +F+ M ER+L+ W+ MISG A++   +E LKLF +M  
Sbjct: 288 LIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQ 347

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
           +   P        I++C+ +GAL     +H  +  SG+  +LS  NALI MYA+CG +  
Sbjct: 348 KRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVK 407

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
           A  VF  MP  + +SW++MI A   HGN   AI+L+ +M +  I P+ +TF+ VL AC H
Sbjct: 408 AREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGH 467

Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
           AGLV+EG + F +M   +GI P  +HY   +DL CRA    +A ++I+++PF P+  IW 
Sbjct: 468 AGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWG 527

Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
           +L++ C++HG  +LG  AA++L +L P H G  V+LSN+YA   RW+D   +RK M  +G
Sbjct: 528 SLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKG 587

Query: 652 VKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDME 711
           + KE   S IE++N+VH+F++ D  H ++  +Y+ L+++V +++ +GY P T  +L D+E
Sbjct: 588 ISKEKASSRIEINNQVHMFMMADRYHKQSDEIYEKLDEVVSKLKLVGYKPSTSGILIDLE 647

Query: 712 SDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVR 771
            + K+  +  HSEKLAV +GL+     + +R++KNLRIC DCH+  K +SKV   EIVVR
Sbjct: 648 EEDKKELVLWHSEKLAVCYGLISRRNESCIRIVKNLRICEDCHSFMKLVSKVYQIEIVVR 707

Query: 772 DGKRFHHFRDGKCSCGDYW 790
           D  RFHH   G CSC DYW
Sbjct: 708 DRTRFHHCSGGICSCRDYW 726



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 137/484 (28%), Positives = 217/484 (44%), Gaps = 75/484 (15%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D   +T LIA Y++   +  AR +F+K  +   D V +N +I  Y  N +   A+ LF D
Sbjct: 155 DPFIQTGLIAMYASCRRIMDARLLFDK--MCHPDAVAWNMIIDGYCQNGHYDDALRLFED 212

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           MR  D+KPD+    +VLSA             +H  V  +G  + + +  ALI++Y  C 
Sbjct: 213 MRSSDMKPDSVILCTVLSACGH-AGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANC- 270

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                     M  AR+++D +  +  +  T M++GY K   +  AR   D M E   V W
Sbjct: 271 --------GAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCW 322

Query: 260 NALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
           +A+ISGY   +          +ML  R   D+ T  SVISAC++ G       +H Y+ R
Sbjct: 323 SAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDR 382

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
           +        +L VNNAL+ +Y KCG + +AR++F  MP ++++SW+++++A+   G  D 
Sbjct: 383 SGFGR----ALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADS 438

Query: 371 AKSLFEAMRERNL----LSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAI 425
           A  LF  M+E N+    +++  ++      G  EEG KLFS M  E G  P    +    
Sbjct: 439 AIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYG--- 495

Query: 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV 485
                                            ++ +Y R   +  A  +  TMP   +V
Sbjct: 496 --------------------------------CMVDLYCRANFLRKAIELIETMPFAPNV 523

Query: 486 -SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC-------NHAGLVKE 537
             W ++++A   HG  A   E   + L E + PD    L VLS         N  GL+++
Sbjct: 524 IIWGSLMSACQVHGE-AELGEFAAKRLLE-LEPDHDGALVVLSNIYAKEKRWNDVGLIRK 581

Query: 538 GRRY 541
              Y
Sbjct: 582 SMSY 585



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 159/332 (47%), Gaps = 40/332 (12%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           S  R++H  +  +G+    H+   LI++Y     +  AR ++D +    ++  T +++ Y
Sbjct: 239 SYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGY 298

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
           +    VK AR +F++  +  RD V ++AMI+ Y+ +     A++LF +M +    PD  T
Sbjct: 299 AKLGMVKDARFIFDQ--MIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQIT 356

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             SV+SA +  V    Q   +H  V +SG G   SV NALI +Y KC +         + 
Sbjct: 357 MLSVISACSH-VGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGN---------LV 406

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            AR VF+ MP ++ +SW++M+  +  +   D+A +    M E                  
Sbjct: 407 KAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKE------------------ 448

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVTL 330
               + I+ +  T+  V+ AC ++GL   G+++ + ++      PT E        +V L
Sbjct: 449 ----VNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHY----GCMVDL 500

Query: 331 YWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
           Y +   + +A ++   MP   +++ W +++SA
Sbjct: 501 YCRANFLRKAIELIETMPFAPNVIIWGSLMSA 532


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 248/694 (35%), Positives = 376/694 (54%), Gaps = 65/694 (9%)

Query: 103 MFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK------PDNFTFTSVL 156
           M ++  ++M+   F  ++ TA    S  H AI+    + R D               S+ 
Sbjct: 1   MPSRAAIRMKPPSFSVSLTTA----SQLHDAIDRLLSLLRADASHAPAARAIAAAVASLR 56

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
               L+       +  H   +     L +S+ +  +  Y   V++   S R L  +AR +
Sbjct: 57  PPSTLLSNRILHLLSSHPATLPDALALLSSLPSTDVCSYNTLVAALGRSPRGL-ASARAL 115

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLML 276
           FD MP RD  SW+ +++ +V++    AA      M    G +                  
Sbjct: 116 FDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGAD--------------- 160

Query: 277 RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
               +EFT +S ++A   +   R G+++H +++R                          
Sbjct: 161 ----NEFTASSALAAATAARCARAGRELHCHVVR-------------------------- 190

Query: 337 VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
               R I     + D V W+A+   Y   G +D+A+S+F+ M  R+++SWT M+      
Sbjct: 191 ----RGI-----DADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFDA 241

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
           G   EG +LF +M   G  P ++ +AG + +CA   + + G+Q+H ++  S    S  AG
Sbjct: 242 GRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSRTGDSCFAG 301

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
           +AL+ MY++ G +  A  VF  MP  D VSW AMI+   Q+G    A+  ++ +L  G  
Sbjct: 302 SALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSSGFR 361

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
           PD +TF+ VLSAC HAGLV +G   F ++   YGI    DHYA  IDLL R+G F  A+D
Sbjct: 362 PDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSRSGLFERAED 421

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636
           +I+++P KP+  +W +LL GCRIH N+ L   AAE LF++ P +  TYV L+N+YA++G 
Sbjct: 422 MINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEPENPATYVTLANIYASVGL 481

Query: 637 WDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRK 696
           +D+   +R+ M  RG+ K P  SWIEV  +VHVFLV D +HP+A+ +Y  L++L ++MR+
Sbjct: 482 FDEVENMRRTMELRGITKMPASSWIEVGTRVHVFLVGDKSHPQAEEIYALLKKLYVKMRE 541

Query: 697 LGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNA 756
            GYV DT FVLHD+E +QK+  +  HSE+LAVAFG++  P G+ ++V KNLRICGDCH  
Sbjct: 542 EGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGSPIKVFKNLRICGDCHTT 601

Query: 757 FKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            K +SK+V REI+VRD  RFHHF++G CSC DYW
Sbjct: 602 IKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 139/505 (27%), Positives = 214/505 (42%), Gaps = 77/505 (15%)

Query: 48  PREHIINRLIDIYCK-SLKLVYARTLFDEIPQPDIVARTTLIAAYSASD-NVKLAREMFN 105
           P   + NR++ +       L  A  L   +P  D+ +  TL+AA   S   +  AR +F+
Sbjct: 58  PSTLLSNRILHLLSSHPATLPDALALLSSLPSTDVCSYNTLVAALGRSPRGLASARALFD 117

Query: 106 KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD--DVKPDNFTFTSVLSALALIV 163
           + P   RD   ++A+++A+  +    AA+ ++R M R+      DN    S   A A   
Sbjct: 118 RMP--RRDHFSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGADNEFTASSALAAATAA 175

Query: 164 EEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER 223
              +   ++HC VV+ G      V +AL  +Y K            +  AR VFD MP R
Sbjct: 176 RCARAGRELHCHVVRRGIDADAVVWSALADMYAKF---------GRLDDARSVFDRMPVR 226

Query: 224 DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEF 283
           D +SWT M+     + Y DA R   DG    + V              +M+   I  +EF
Sbjct: 227 DVVSWTAML-----DRYFDAGR---DGEGFRLFV--------------RMMRSGILPNEF 264

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
           TY  V+ ACA     +LGKQVH  +    AK     S    +ALV +Y K G +  A  +
Sbjct: 265 TYAGVLRACAEFTSEKLGKQVHGRM----AKSRTGDSCFAGSALVHMYSKYGDMGTAMRV 320

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
           F  MP+ DLVSW A++S Y                               AQNG  +E L
Sbjct: 321 FRGMPKPDLVSWTAMISGY-------------------------------AQNGQPDEAL 349

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL-HAQLVHSGYDSSLSAGNALITM 462
             F  +   GF+P    F G +++CA  G ++ G  + H+     G + +      +I +
Sbjct: 350 HCFDMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDL 409

Query: 463 YARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-I 520
            +R G+ E A  + NTMP   +   W +++     H N   A    E + +  I P+   
Sbjct: 410 LSRSGLFERAEDMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFE--IEPENPA 467

Query: 521 TFLTVLSACNHAGLVKEGRRYFETM 545
           T++T+ +     GL  E      TM
Sbjct: 468 TYVTLANIYASVGLFDEVENMRRTM 492



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 150/386 (38%), Gaps = 88/386 (22%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D V  + L   Y+    +  AR +F++ P+  RD V + AM+  Y           LF  
Sbjct: 196 DAVVWSALADMYAKFGRLDDARSVFDRMPV--RDVVSWTAMLDRYFDAGRDGEGFRLFVR 253

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M R  + P+ FT+  VL A A    E K   Q+H  + KS TG      +AL+ +Y K  
Sbjct: 254 MMRSGILPNEFTYAGVLRACAEFTSE-KLGKQVHGRMAKSRTGDSCFAGSALVHMYSKYG 312

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                     MG A RVF  MP+ D +SWT M++GY +N   D A    D +        
Sbjct: 313 D---------MGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDML-------- 355

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
             L SG+            + D  T+  V+SACA++GL   G  +   +   + K   E 
Sbjct: 356 --LSSGF------------RPDHVTFVGVLSACAHAGLVDKGLGIFHSI---KDKYGIEH 398

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERD-------------------LVSWNA--- 357
           +      ++ L  + G    A D+ N MP +                    L  W A   
Sbjct: 399 TADHYACVIDLLSRSGLFERAEDMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEAL 458

Query: 358 -------------ILSAYVSAGLIDEAKSLFEAMRERNLL-----SWT-------VMISG 392
                        + + Y S GL DE +++   M  R +      SW        V + G
Sbjct: 459 FEIEPENPATYVTLANIYASVGLFDEVENMRRTMELRGITKMPASSWIEVGTRVHVFLVG 518

Query: 393 LAQNGYGEEGL----KLFSQMRLEGF 414
              +   EE      KL+ +MR EG+
Sbjct: 519 DKSHPQAEEIYALLKKLYVKMREEGY 544


>gi|326522845|dbj|BAJ88468.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 776

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 261/766 (34%), Positives = 390/766 (50%), Gaps = 99/766 (12%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           AR++H HM+ +G      +   L+++Y +      AR LFD +P  ++V  T LI     
Sbjct: 95  ARALHGHMVKTGTAADMFVATSLVNVYMRCASSRDARRLFDGMPDKNVVTWTALI----- 149

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                                       T ++ NS    A+E+F +M      P ++T  
Sbjct: 150 ----------------------------TGHTLNSEPALALEVFVEMLELGRYPSHYTLG 181

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
            +LSA +          Q+H   +K G    TS+ N+L  +Y K            + + 
Sbjct: 182 GMLSACS-AARRIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGD---------LESG 231

Query: 214 RRVFDEMPERDELSWTTMMTGYVKND-YLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
            R F   P+++ ++WTTM++   +++ YLD                            L 
Sbjct: 232 LRAFKGTPDKNVITWTTMISSCAEDENYLDLGLSLF----------------------LD 269

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           ML   +  +EFT TSV+S C       LGKQV A+  +       E +LPV N+ + LY 
Sbjct: 270 MLEGGVMPNEFTLTSVMSLCGARLDMSLGKQVQAFCYKVGC----EANLPVKNSTMYLYL 325

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           + G+ +EA  +F +M    +++WNA++S Y  A ++D AK    A R R           
Sbjct: 326 RKGETDEAMRLFEEMDSSSIITWNAMISGY--AQIMDSAKDDLHA-RSR----------- 371

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
                 G + LKLF  +     KP  + F+  ++ C+ + ALE G Q+HA  + +G  S 
Sbjct: 372 ------GFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHANTIKTGCLSD 425

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           +   +AL+ MY +CG +E A   F  MP    V+W +MI+   QHG    AI+L+E M+ 
Sbjct: 426 VVVNSALVNMYNKCGSIECATKAFVEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVL 485

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
            G  P+ ITF+++LSAC++AGLV+E  RYF+ M   Y I P  DHY   +D+  R G+  
Sbjct: 486 SGARPNEITFVSLLSACSYAGLVEEAERYFDMMRNEYHIEPLVDHYGCMVDMFVRLGRLD 545

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632
           +A   I    F+P+  IW +L+AGCR HGN++L   AA++L +L P    TYVLL NMY 
Sbjct: 546 DAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLELKPKVIETYVLLLNMYI 605

Query: 633 NLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVL 692
           + GRW D ARVRKL +   V      SWI + +KV+ F  DD  HP+A  +Y+ LE L+ 
Sbjct: 606 STGRWRDVARVRKLAKHEDVGVLRDRSWIAIRDKVYFFRADDMTHPQATELYQLLENLLE 665

Query: 693 EMRKLGYVP---DTKFVLHDMESDQKEYA------LSTHSEKLAVAFGLMKLPGGATVRV 743
           + + +GY P     + +    E D  + A      +  HSE+LAVA GL++ P GATVRV
Sbjct: 666 KAKAVGYEPYQNAPELLFDSKEGDDDKPAAAAGSLIKHHSERLAVALGLLETPPGATVRV 725

Query: 744 LKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
            KN+ +C DCH++ K+ S +  REIVVRD KR H F+DG+CSCGD+
Sbjct: 726 TKNITMCRDCHSSIKYFSLLANREIVVRDSKRLHKFKDGRCSCGDF 771



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 107/210 (50%), Gaps = 8/210 (3%)

Query: 328 VTLYWKC---GKVNEARDIFNQMPER----DLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           V L  +C   G +  AR +   M +     D+    ++++ Y+      +A+ LF+ M +
Sbjct: 80  VPLLHRCVEAGGLGAARALHGHMVKTGTAADMFVATSLVNVYMRCASSRDARRLFDGMPD 139

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
           +N+++WT +I+G   N      L++F +M   G  P  Y   G +++C+    ++ G+Q+
Sbjct: 140 KNVVTWTALITGHTLNSEPALALEVFVEMLELGRYPSHYTLGGMLSACSAARRIDLGQQV 199

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           H   +  G D+  S GN+L  +Y + G +E+    F   P+ + ++W  MI++  +  N 
Sbjct: 200 HGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNVITWTTMISSCAEDENY 259

Query: 501 AR-AIELYEQMLKEGILPDRITFLTVLSAC 529
               + L+  ML+ G++P+  T  +V+S C
Sbjct: 260 LDLGLSLFLDMLEGGVMPNEFTLTSVMSLC 289



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 160/355 (45%), Gaps = 70/355 (19%)

Query: 18  SQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP 77
           S + LC  R  +  SL + V A     G +    + N  + +Y +  +   A  LF+E+ 
Sbjct: 284 SVMSLCGAR--LDMSLGKQVQAFCYKVGCEANLPVKNSTMYLYLRKGETDEAMRLFEEMD 341

Query: 78  QPDIVARTTLIAAY-----SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
              I+    +I+ Y     SA D++  AR                          S G  
Sbjct: 342 SSSIITWNAMISGYAQIMDSAKDDLH-AR--------------------------SRGFQ 374

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           A++LFRD+ R ++KPD FTF+S+LS  + ++  E Q  Q+H   +K+G      V +AL+
Sbjct: 375 ALKLFRDLVRSELKPDLFTFSSILSVCSAMMALE-QGEQIHANTIKTGCLSDVVVNSALV 433

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
           ++Y KC S         +  A + F EMP R  ++WT+M++GY ++     A +  + M 
Sbjct: 434 NMYNKCGS---------IECATKAFVEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDM- 483

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
                    ++SG             + +E T+ S++SAC+ +GL    ++ +  ++R E
Sbjct: 484 ---------VLSG------------ARPNEITFVSLLSACSYAGLVEEAER-YFDMMRNE 521

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAG 366
               P   +     +V ++ + G++++A     +   E +   W+++++   S G
Sbjct: 522 YHIEP--LVDHYGCMVDMFVRLGRLDDAFSFIKRTGFEPNEAIWSSLVAGCRSHG 574



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 11/185 (5%)

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
           C   G L   R LH  +V +G  + +    +L+ +Y RC     A  +F+ MP+ + V+W
Sbjct: 86  CVEAGGLGAARALHGHMVKTGTAADMFVATSLVNVYMRCASSRDARRLFDGMPDKNVVTW 145

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
            A+I     +   A A+E++ +ML+ G  P   T   +LSAC+ A  +  G++    +HG
Sbjct: 146 TALITGHTLNSEPALALEVFVEMLELGRYPSHYTLGGMLSACSAARRIDLGQQ----VHG 201

Query: 548 PYGIPPGEDHYARFIDLLCR----AGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN- 602
            Y I  G D      + LCR    +G            P K +   W  +++ C    N 
Sbjct: 202 -YSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDK-NVITWTTMISSCAEDENY 259

Query: 603 IDLGI 607
           +DLG+
Sbjct: 260 LDLGL 264


>gi|356528388|ref|XP_003532785.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Glycine max]
          Length = 721

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 249/749 (33%), Positives = 394/749 (52%), Gaps = 101/749 (13%)

Query: 51  HIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLK 110
           H+ NR +D          AR +FD+IP P +   T ++ AY+ +  ++ A ++F + P K
Sbjct: 65  HLNNRSLD---------EARAIFDQIPTPHVSLYTIMLHAYAQNHRLREAIDLFRRIPFK 115

Query: 111 MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM 170
             D V +N++I    H  +   A +LF +M R  V     ++T+++  L           
Sbjct: 116 --DVVSWNSIIKGCLHCGDIVTARKLFDEMPRRTV----VSWTTLVDGL----------- 158

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
            +   +V+    LF ++                               E  +RD  +W  
Sbjct: 159 -LRLGIVQEAETLFWAM-------------------------------EPMDRDVAAWNA 186

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR---ELKMLMLR------IQLD 281
           M+ GY  N  +D A +    M     ++W+++I+G  H    E  +++ R      + L 
Sbjct: 187 MIHGYCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNGKSEQALVLFRDMVASGVCLS 246

Query: 282 EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEAR 341
                  +SA A    +R+G Q+H  + +       EF   V+ +LVT Y  C ++  A 
Sbjct: 247 SGVLVCGLSAAAKIPAWRVGIQIHCSVFKLGDWHFDEF---VSASLVTFYAGCKQMEAAC 303

Query: 342 DIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEE 401
            +F ++  + +V W                               T +++G   N    E
Sbjct: 304 RVFGEVVYKSVVIW-------------------------------TALLTGYGLNDKHRE 332

Query: 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALIT 461
            L++F +M      P + +F  A+ SC GL  +E G+ +HA  V  G +S    G +L+ 
Sbjct: 333 ALEVFGEMMRIDVVPNESSFTSALNSCCGLEDIERGKVIHAAAVKMGLESGGYVGGSLVV 392

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           MY++CG V  A  VF  +   + VSWN++I    QHG G  A+ L+ QML+EG+ PD IT
Sbjct: 393 MYSKCGYVSDAVYVFKGINEKNVVSWNSVIVGCAQHGCGMWALALFNQMLREGVDPDGIT 452

Query: 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581
              +LSAC+H+G++++ R +F        +    +HY   +D+L R G+  EA+ V+ S+
Sbjct: 453 VTGLLSACSHSGMLQKARCFFRYFGQKRSVTLTIEHYTSMVDVLGRCGELEEAEAVVMSM 512

Query: 582 PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAA 641
           P K ++ +W ALL+ CR H N+DL  +AA Q+F++ P  +  YVLLSN+YA+  RW + A
Sbjct: 513 PMKANSMVWLALLSACRKHSNLDLAKRAANQIFEIEPDCSAAYVLLSNLYASSSRWAEVA 572

Query: 642 RVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVP 701
            +R+ M+  GV K+PG SW+ +  + H FL  D +HP A+ +Y+ LE L +++++LGYVP
Sbjct: 573 LIRRKMKHNGVVKKPGSSWLTLKGQKHKFLSADRSHPLAEKIYQKLEWLGVKLKELGYVP 632

Query: 702 DTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMS 761
           D +F LHD+E++QKE  LS HSE+LA+AFGL+    G+ + V+KNLR+CGDCHNA K M+
Sbjct: 633 DQQFALHDVETEQKEEMLSYHSERLAIAFGLLSTVEGSAITVMKNLRVCGDCHNAIKLMA 692

Query: 762 KVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           K+V REIVVRD  RFH F++G CSCGDYW
Sbjct: 693 KIVDREIVVRDSSRFHDFKNGICSCGDYW 721


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/573 (39%), Positives = 337/573 (58%), Gaps = 46/573 (8%)

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY---------VHRELKMLMLRIQ 279
           T ++  Y K + L  AR   D M E   V+W A+ISGY         +H  ++ML    +
Sbjct: 49  TRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTE 108

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            +EFT+ +V+S+C     F LG+Q+H++                                
Sbjct: 109 PNEFTFATVLSSCTGFSGFELGRQIHSH-------------------------------- 136

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
              IF +  E  +   +++L  Y  AG I EA+ +FE + ER+++S T +ISG AQ G  
Sbjct: 137 ---IFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 193

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
           EE L+LF +++ EG       +A  +T+ +GL AL++G+Q+H+ ++       +   N+L
Sbjct: 194 EEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSL 253

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG-ILPD 518
           I MY++CG +  A  +FN MP    +SWNAM+    +HG G   ++L++ M +E  + PD
Sbjct: 254 IDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPD 313

Query: 519 RITFLTVLSACNHAGLVKEGRRYF-ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577
            +TFL VLS C+H GL  +G   F E M+G   I  G +HY   IDLL RAG+  EA ++
Sbjct: 314 SVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFEL 373

Query: 578 IDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRW 637
           I  +PF+P+A IW +LL  CR+H N ++G     +L ++ P +AG YV+LSN+YA+ GRW
Sbjct: 374 IKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRW 433

Query: 638 DDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKL 697
           +D   VR+LM ++ V KEPG SWIE+D  +H F   D +HP  + V+  + +L+++ ++ 
Sbjct: 434 EDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVRELLVKFKES 493

Query: 698 GYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAF 757
           GYVPD   VL+D++ +QKE  L  HSEKLA+AFGL+    G  +RV+KNLRIC DCHN  
Sbjct: 494 GYVPDQSCVLYDVDEEQKEKILLGHSEKLALAFGLISTSEGVPLRVIKNLRICVDCHNFA 553

Query: 758 KFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KF+SKV GR++ +RD  RFHH   G CSCGDYW
Sbjct: 554 KFVSKVYGRQVSIRDKNRFHHVAGGICSCGDYW 586



 Score =  155 bits (392), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 134/491 (27%), Positives = 210/491 (42%), Gaps = 125/491 (25%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + VHAHMI + + P  ++  RLI +Y K   L  AR +FDE+ + ++V+ T        
Sbjct: 29  GQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWT-------- 80

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                                    AMI+ YS       A+ LF  M R D +P+ FTF 
Sbjct: 81  -------------------------AMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFA 115

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           +VLS+       E    Q+H  + K        V ++L+ +Y K            +  A
Sbjct: 116 TVLSSCTGFSGFELG-RQIHSHIFKRNYENHIFVGSSLLDMYAKA---------GRIHEA 165

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL-----DGMSENVGVAWNALISGYVH 268
           R VF+ +PERD +S T +++GY +    + A E       +GMS N           YV 
Sbjct: 166 RGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSN-----------YV- 213

Query: 269 RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALV 328
                          TY S+++A +       GKQVH+++LR E      F + + N+L+
Sbjct: 214 ---------------TYASLLTALSGLAALDHGKQVHSHVLRCELP----FYVVLQNSLI 254

Query: 329 TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL----- 383
            +Y KCG +N AR IFN MP R ++SWNA+L  Y   G   E   LF+ MRE N      
Sbjct: 255 DMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDS 314

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
           +++  ++SG +  G  ++GL++F +M                        +  G ++ A 
Sbjct: 315 VTFLAVLSGCSHGGLEDKGLEMFDEM------------------------MNGGDEIEAG 350

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGN--- 499
           + H G          +I +  R G VE A  +   MP   + + W +++ A   H N   
Sbjct: 351 IEHYG---------CVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNTNI 401

Query: 500 ----GARAIEL 506
               G R +E+
Sbjct: 402 GEFVGCRLLEI 412



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 164/336 (48%), Gaps = 47/336 (13%)

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           Y  +++ C N    R G++VHA++++T   P    S      L+ LY KC  +  AR +F
Sbjct: 13  YNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLS----TRLIILYTKCECLGCARHVF 68

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           ++M ER++VSW A++S Y                               +Q G+  E L 
Sbjct: 69  DEMRERNVVSWTAMISGY-------------------------------SQRGFASEALH 97

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           LF QM     +P ++ FA  ++SC G    E GRQ+H+ +    Y++ +  G++L+ MYA
Sbjct: 98  LFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYA 157

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           + G +  A  VF  +P  D VS  A+I+   Q G    A+EL+ ++ +EG+  + +T+ +
Sbjct: 158 KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYAS 217

Query: 525 VLSACNHAGLVKEGRRYFETM---HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581
           +L+A +    +  G++    +     P+ +          ID+  + G  + A+ + +++
Sbjct: 218 LLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNS----LIDMYSKCGNLNYARKIFNNM 273

Query: 582 PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           P + +   W A+L G   HG    GI+   +LF+LM
Sbjct: 274 PVR-TVISWNAMLVGYSKHGK---GIEVV-KLFKLM 304



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 147/331 (44%), Gaps = 69/331 (20%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R +H+H+    ++    + + L+D+Y K+ ++  AR +F+ +P+ D+V+ T +I+ Y+
Sbjct: 129 LGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 188

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
               + L  E                              A+ELF  ++R+ +  +  T+
Sbjct: 189 ---QLGLDEE------------------------------ALELFCRLQREGMSSNYVTY 215

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            S+L+AL+ +   +    Q+H  V++     +  + N+LI +Y KC +         +  
Sbjct: 216 ASLLTALSGLAALDHG-KQVHSHVLRCELPFYVVLQNSLIDMYSKCGN---------LNY 265

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVAWNALISGYVHREL 271
           AR++F+ MP R  +SW  M+ GY K+   ++  + F     EN                 
Sbjct: 266 ARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREEN----------------- 308

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                +++ D  T+ +V+S C++ GL   G ++   ++        E  +     ++ L 
Sbjct: 309 -----KVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMM--NGGDEIEAGIEHYGCVIDLL 361

Query: 332 WKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
            + G+V EA ++  +MP E     W ++L A
Sbjct: 362 GRAGRVEEAFELIKKMPFEPTAAIWGSLLGA 392


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 258/764 (33%), Positives = 416/764 (54%), Gaps = 62/764 (8%)

Query: 41  MISSGFKPREHIINRLIDIYCKS-------------LKLVYARTLFDEIPQPDIVARTTL 87
           M++SG  P ++     + +  KS             +K+ YA+ LF          + +L
Sbjct: 124 MMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMDYAKDLF---------VQNSL 174

Query: 88  IAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVK 146
           +  Y+    +  AR++F++  +  R+ V + +MI  Y+       A++LF  M RD DV 
Sbjct: 175 VHFYAECGELDCARKVFDE--MSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVI 232

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           P++ T   V+SA A + E+ +   +++  +  SG  +   +++AL+ +Y+KC        
Sbjct: 233 PNSVTMVCVISACAKL-EDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKC-------- 283

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
            + +  A+R+FDE    +      M + YV+      A   L+ M +          SG 
Sbjct: 284 -NAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMD----------SG- 331

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                      I+ D  +  S IS+C+       GK  H Y+LR   +        + NA
Sbjct: 332 -----------IRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDN----ICNA 376

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           L+ +Y KC + + A  IF++M  + +V+WN+I++ Y+  G +D A   F  M E+N++SW
Sbjct: 377 LIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSW 436

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS-CAGLGALENGRQLHAQLV 445
             +IS L Q    EE +++F  M+ +     D     +I S C  LGAL+  + ++  + 
Sbjct: 437 NTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIE 496

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIE 505
            +     +  G  L+ M++RCG  E+A  +FN++ N D  +W A I A+   GN  RAIE
Sbjct: 497 KNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIE 556

Query: 506 LYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLL 565
           L+ +M+++G+ PD + F+  L+AC H GLV++G+  F +M   +G+ P + HY   +DLL
Sbjct: 557 LFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLL 616

Query: 566 CRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYV 625
            RAG   EA  +I  +P +P+  IW +LLA CR+ GN+++   AAE++  L P   G+YV
Sbjct: 617 GRAGLLEEALQLIKDMPTEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVLAPERTGSYV 676

Query: 626 LLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYK 685
           LLSN+YA+ GRW+D A+VR  M+++G++K PG S I++  K H F   D +HPE + +  
Sbjct: 677 LLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSVIQIRGKTHEFTSGDESHPEMRKIEA 736

Query: 686 YLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLK 745
            L++L      LG+VPD   VL D++  +K + LS HSEKLA+AFGL+    G T+R++K
Sbjct: 737 MLDELSQRASDLGHVPDLSNVLMDVDEQEKIFMLSRHSEKLAMAFGLISSNKGTTIRIVK 796

Query: 746 NLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
           NLR+C  CH+  KF SKV  REI++RD  RFH  R GKCSC D+
Sbjct: 797 NLRVCSYCHSFAKFASKVYNREIILRDNNRFHFIRQGKCSCSDF 840



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 141/541 (26%), Positives = 226/541 (41%), Gaps = 111/541 (20%)

Query: 80  DIVARTTLIA---AYSASDNVKLAREMFNKTPLKMRDTVF-YNAMITAYSHNSNGHAAIE 135
           D+ A T L+A        +++  A+E+F     +   T F YN++I  Y+ +     AI 
Sbjct: 62  DVSAITKLVARSCELGTRESLSFAKEVFENG--ESYGTCFMYNSLIRGYASSGLCKEAIL 119

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LF  M    + PD +TF   LS  A    ++   +Q+H  ++K        V N+L+  Y
Sbjct: 120 LFIRMMNSGISPDKYTFPFGLSVCAK-SRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFY 178

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            +C           +  AR+VFDEM ER+ +SWT+M+ GY + ++   A +    M  + 
Sbjct: 179 AEC---------GELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDE 229

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
            V  N++                     T   VISACA       G++V+ + +R     
Sbjct: 230 DVIPNSV---------------------TMVCVISACAKLEDLETGEKVYDF-IRDSGIE 267

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
             +  +   +ALV +Y KC  ++ A+ +F++    +L   NA+ S YV  GL  EA    
Sbjct: 268 VNDLMI---SALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEA---- 320

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
                                      L + + M   G +P   +   AI+SC+ L  + 
Sbjct: 321 ---------------------------LGVLNLMMDSGIRPDRISMLSAISSCSQLRNIL 353

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARC----------------------------- 466
            G+  H  ++ +G++S  +  NALI MY +C                             
Sbjct: 354 WGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYI 413

Query: 467 --GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML-KEGILPDRITFL 523
             G V+AA   FNTMP  + VSWN +I+AL Q      AIE++  M  +E +  D +T +
Sbjct: 414 ENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMM 473

Query: 524 TVLSACNHAG---LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580
           ++ SAC H G   L K    Y E       +  G       +D+  R G    A  + +S
Sbjct: 474 SIASACGHLGALDLAKWIYYYIEKNRIQLDVRLG----TTLVDMFSRCGDPESAMSIFNS 529

Query: 581 L 581
           L
Sbjct: 530 L 530



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 178/393 (45%), Gaps = 58/393 (14%)

Query: 241 LDAARE-FLDGMSENVGVAWNALISGYVH----RELKMLMLR-----IQLDEFTYTSVIS 290
           L  A+E F +G S      +N+LI GY      +E  +L +R     I  D++T+   +S
Sbjct: 82  LSFAKEVFENGESYGTCFMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLS 141

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
            CA S     G Q+H  ++                          K++ A+D+F Q    
Sbjct: 142 VCAKSRDKGNGIQIHGLII--------------------------KMDYAKDLFVQ---- 171

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM- 409
                N+++  Y   G +D A+ +F+ M ERN++SWT MI G A+  + ++ + LF +M 
Sbjct: 172 -----NSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMV 226

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
           R E   P        I++CA L  LE G +++  +  SG + +    +AL+ MY +C  +
Sbjct: 227 RDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAI 286

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           + A  +F+     +    NAM +   + G    A+ +   M+  GI PDRI+ L+ +S+C
Sbjct: 287 DIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSC 346

Query: 530 NHAGLVKEGRRYFETMHGPY---GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
           +    +  G+    + HG     G    ++     ID+  +  +   A  + D +  K +
Sbjct: 347 SQLRNILWGK----SCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNK-T 401

Query: 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
              W +++AG   +G +D    AA + F  MP 
Sbjct: 402 VVTWNSIVAGYIENGEVD----AAWETFNTMPE 430



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 143/340 (42%), Gaps = 39/340 (11%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            +S H +++ +GF+  ++I N LID+Y K  +   A  +FD +    +V   +++A Y  
Sbjct: 355 GKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIE 414

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD-VKPDNFTF 152
           +  V  A E FN  P K  + V +N +I+A    +    AIE+F  M+  + V  D  T 
Sbjct: 415 NGEVDAAWETFNTMPEK--NIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTM 472

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            S+ SA   +   +     ++  + K+   L   +   L+ ++ +C             +
Sbjct: 473 MSIASACGHLGALD-LAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPE---------S 522

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A  +F+ +  RD  +WT  +        ++ A E  + M E                   
Sbjct: 523 AMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQ------------------ 564

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                ++ D   +   ++AC + GL + GK++   + +       +        +V L  
Sbjct: 565 ----GLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHY---GCMVDLLG 617

Query: 333 KCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEA 371
           + G + EA  +   MP E + V WN++L+A    G ++ A
Sbjct: 618 RAGLLEEALQLIKDMPTEPNDVIWNSLLAACRVQGNVEMA 657


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 257/710 (36%), Positives = 383/710 (53%), Gaps = 73/710 (10%)

Query: 86  TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
            L+ AYS   ++  A+  F +  + + +   +N ++ AY+ N +   A  LF  M    V
Sbjct: 72  VLVDAYSKHGSLHGAQLAFGR--ITLHNAHSWNILMAAYAQNGHPRGAATLFHWMCSQGV 129

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVS 205
           +P+  T ++ L A            +++  +      + + V ++LI++Y +C       
Sbjct: 130 RPNAVTLSTALLACT-AARNLALGRKLNELIASEALEIDSHVESSLITMYGRCRE----- 183

Query: 206 SRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265
               +  A R FD  PE+D + WT M++ Y  N     A E +                 
Sbjct: 184 ----IEEAERAFDRSPEKDVVCWTAMISAYAHNWRTSRALELVR---------------- 223

Query: 266 YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
                 +M +  I+L   TY S++ ACA++   R G   H    R  A      S  V  
Sbjct: 224 ------RMDLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQ---RAAAIGLDRSSTVVAG 274

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
            LV LY KCG+V                               D+A+ + +AM  R  +S
Sbjct: 275 TLVNLYGKCGRV-------------------------------DDARRVLDAMPVRTSVS 303

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
           WT MI+  AQNG   E + LF  M LEG +P D      + SCA LG L  G+++HA++ 
Sbjct: 304 WTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIR 363

Query: 446 HS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP--NVDSVSWNAMIAALGQHGNGAR 502
            S  +  SL   NA+ITMY +CG +E A  VF  +P      V+W AMI A  Q+G G  
Sbjct: 364 SSPSFSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRSVVTWTAMIRAYAQNGVGEE 423

Query: 503 AIELYEQMLKEG-ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF 561
           AIEL+++ML +G   P+R+TFL+VL AC+H G +++   +F +M   +G+PP  DHY   
Sbjct: 424 AIELFQEMLIDGGTEPNRVTFLSVLCACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCL 483

Query: 562 IDLLCRAGKFSEA-KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
           +DLL RAG+  EA K ++    F+     W A L+ C+++G+++   +AA+++ +L P +
Sbjct: 484 VDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSELEPEN 543

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEA 680
               VLLSN+YA  GR  D AR+R  M+  GVKK  G SWIE++N+VH F+V D +HP  
Sbjct: 544 VAGRVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRSWIEINNRVHEFMVSDVSHPRK 603

Query: 681 QAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT 740
             +Y  LE+L  E+++ GYVPDTK VL D++ ++K   L  HSE+LA+A G++  P G T
Sbjct: 604 LEIYSELERLHREIKEAGYVPDTKMVLRDVDEEKKVQLLGYHSERLAMALGIISTPPGTT 663

Query: 741 VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +RV+KNLR+C DCH A KF+S++VGR+I+VRD  RFHHF+DG CSCGDYW
Sbjct: 664 LRVVKNLRVCSDCHAATKFISQIVGRQIIVRDTSRFHHFKDGVCSCGDYW 713



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 123/477 (25%), Positives = 202/477 (42%), Gaps = 85/477 (17%)

Query: 41  MISSGFKPREHIINRLIDIYCKSLKLVYARTLFD----EIPQPDIVARTTLIAAYSASDN 96
           M S G +P    ++  +     +  L   R L +    E  + D    ++LI  Y     
Sbjct: 124 MCSQGVRPNAVTLSTALLACTAARNLALGRKLNELIASEALEIDSHVESSLITMYGRCRE 183

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
           ++ A   F+++P K  D V + AMI+AY+HN     A+EL R M  + +K    T+ S+L
Sbjct: 184 IEEAERAFDRSPEK--DVVCWTAMISAYAHNWRTSRALELVRRMDLEGIKLGLPTYVSLL 241

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVL-NALISVYVKCVSSPFVSSRSLMGAARR 215
            A A  + + +  +  H      G    ++V+   L+++Y KC           +  ARR
Sbjct: 242 DACASTM-DLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKC---------GRVDDARR 291

Query: 216 VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLM 275
           V D MP R  +SWT M+  Y +N     A      M           + G          
Sbjct: 292 VLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMD----------LEG---------- 331

Query: 276 LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG 335
              +  + T  SV+ +CA  G   LGK++HA   R  + P+   SL + NA++T+Y KCG
Sbjct: 332 --AEPSDITLISVVDSCAVLGTLSLGKRIHA---RIRSSPSFSQSLMLLNAVITMYGKCG 386

Query: 336 KVNEARDIFNQMP--ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
            +  AR++F  +P   R +V+W A++ AY   G+                          
Sbjct: 387 NLELAREVFECVPLRTRSVVTWTAMIRAYAQNGV-------------------------- 420

Query: 394 AQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
                GEE ++LF +M ++ G +P    F   + +C+ LG LE   Q        G D  
Sbjct: 421 -----GEEAIELFQEMLIDGGTEPNRVTFLSVLCACSHLGQLE---QAWEHFCSMGPDFG 472

Query: 453 L-SAGN---ALITMYARCGVVEAANCVFNTMPN--VDSVSWNAMIAALGQHGNGARA 503
           +  AG+    L+ +  R G +  A  +     +   D V W A ++A   +G+  R+
Sbjct: 473 VPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDLERS 529



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 138/298 (46%), Gaps = 11/298 (3%)

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDL----VSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           N   +L W+C  ++E R +  Q+  R L       N ++ AY   G +  A+  F  +  
Sbjct: 36  NDYASLLWQCRGLDEVRKLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRITL 95

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
            N  SW ++++  AQNG+      LF  M  +G +P     + A+ +C     L  GR+L
Sbjct: 96  HNAHSWNILMAAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRKL 155

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           +  +     +      ++LITMY RC  +E A   F+  P  D V W AMI+A   +   
Sbjct: 156 NELIASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWRT 215

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA- 559
           +RA+EL  +M  EGI     T++++L AC     ++ G   F       G+       A 
Sbjct: 216 SRALELVRRMDLEGIKLGLPTYVSLLDACASTMDLRNG-VAFHQRAAAIGLDRSSTVVAG 274

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
             ++L  + G+  +A+ V+D++P + S   W A++A    +GN    I     LFQ M
Sbjct: 275 TLVNLYGKCGRVDDARRVLDAMPVRTSVS-WTAMIAAYAQNGNAAEAI----NLFQCM 327



 Score = 79.3 bits (194), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 158/362 (43%), Gaps = 60/362 (16%)

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           + +   V   TL+  Y     V  AR + +  P+  R +V + AMI AY+ N N   AI 
Sbjct: 265 LDRSSTVVAGTLVNLYGKCGRVDDARRVLDAMPV--RTSVSWTAMIAAYAQNGNAAEAIN 322

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS---VLNALI 192
           LF+ M  +  +P + T  SV+ + A ++       ++H  +  S +  F+    +LNA+I
Sbjct: 323 LFQCMDLEGAEPSDITLISVVDSCA-VLGTLSLGKRIHARIRSSPS--FSQSLMLLNAVI 379

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMP--ERDELSWTTMMTGYVKNDYLDAAREFLDG 250
           ++Y KC +         +  AR VF+ +P   R  ++WT M+  Y +N   + A E    
Sbjct: 380 TMYGKCGN---------LELAREVFECVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQE 430

Query: 251 MSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
           M          LI G             + +  T+ SV+ AC++     LG+   A+   
Sbjct: 431 M----------LIDGGT-----------EPNRVTFLSVLCACSH-----LGQLEQAW--E 462

Query: 311 TEAKPTPEFSLPVNN----ALVTLYWKCGKVNEARDIF--NQMPERDLVSWNAILSAYVS 364
                 P+F +P        LV L  + G++ EA  +   ++  E D+V W A LSA   
Sbjct: 463 HFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQM 522

Query: 365 AGLIDEAKSLFEAMRE---RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
            G ++ ++   + + E    N+    ++ +  A  G   +  ++ ++M+  G K     F
Sbjct: 523 NGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMKSSGVKK----F 578

Query: 422 AG 423
           AG
Sbjct: 579 AG 580


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 248/713 (34%), Positives = 381/713 (53%), Gaps = 82/713 (11%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVF-YNAMITAYSHNSNGHAAIELFRDMRRD 143
           T LI A S+  ++  AR++F+  P   R  VF +NA+I  YS N++   A+ ++  M+  
Sbjct: 57  TKLIHASSSYGDITFARQVFDDLP---RPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLA 113

Query: 144 DVKPDNFTFTSVLSALALIVEEEKQCMQM----HCTVVKSGTGLFTSVLNALISVYVKCV 199
            V PD+FTF  +L A   +       +QM    H  V + G      V N LI++Y KC 
Sbjct: 114 RVSPDSFTFPHLLKACGGLSH-----LQMGRFVHAQVFRLGFEADVFVQNGLIALYAKC- 167

Query: 200 SSPFVSSRSLMGAARRVFD--EMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
                     +G AR VF+   +PER  +SWT +++ Y +N     A E    M +    
Sbjct: 168 --------RRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRK---- 215

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                             + ++ D     SV++A         G+ +HA +++   +  P
Sbjct: 216 ------------------MDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEP 257

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
           +  + +N    T+Y KCG+V  A+ +F++M   +L+ WNA++S Y   G   +A  LF  
Sbjct: 258 DLLISLN----TMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHE 313

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
           M  +++                               +P   +   AI++CA +G+LE  
Sbjct: 314 MINKDV-------------------------------RPDTISITSAISACAQVGSLEQA 342

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           R +   +  S Y   +   +ALI M+A+CG VE A  VF+   + D V W+AMI   G H
Sbjct: 343 RWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLH 402

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
           G    AI LY  M ++G+ P+ +TFL +L ACNH+G+V+EG  +F  M   + I P + H
Sbjct: 403 GQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRM-ADHKINPQQQH 461

Query: 558 YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           YA  IDLL RAG   +A +VI  +P +P   +W ALL+ C+ H +++LG  AA+QLF + 
Sbjct: 462 YACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQLFSID 521

Query: 618 PHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAH 677
           P + G YV LSN+YA    WD  A VR  M+++G+ K+ GCSW+EV  ++  F V D +H
Sbjct: 522 PSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEGFRVGDKSH 581

Query: 678 PEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPG 737
           P  + + + +E +   +++ G+V +    LHD+  ++ E  L +HSE++ +A+GL+  P 
Sbjct: 582 PRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERITIAYGLISTPQ 641

Query: 738 GATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           G T+R+ KNLR C +CH A K +SK+VGREIVVRD  RFHHF+DG CSCGDYW
Sbjct: 642 GTTLRITKNLRACVNCHAATKLISKLVGREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 192/430 (44%), Gaps = 72/430 (16%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + D+  +  LIA Y+    +  AR +F   PL  R  V + A+++AY+ N     A+E+F
Sbjct: 151 EADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIF 210

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
             MR+ DVKPD     SVL+A   + ++ +Q   +H +V+K G      +L +L ++Y K
Sbjct: 211 SQMRKMDVKPDCVALVSVLNAFTCL-QDLEQGRSIHASVMKMGLETEPDLLISLNTMYAK 269

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C           +  A+ +FD+M   + + W  M++GY KN +   A++ +D   E    
Sbjct: 270 C---------GQVATAKILFDKMKSPNLILWNAMISGYAKNGF---AKDAIDLFHE---- 313

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                          M+   ++ D  + TS ISACA  G     + +  Y+ R++ +   
Sbjct: 314 ---------------MINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRD-- 356

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
              + +++AL+ ++ KCG V  AR +F++  +RD+V W+A++  Y   GL          
Sbjct: 357 --DVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGY---GL---------- 401

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
                             +G   E + L+  M  +G  P D  F G + +C   G +  G
Sbjct: 402 ------------------HGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREG 443

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQ 496
                ++     +        +I +  R G ++ A  V   MP    V+ W A+++A  +
Sbjct: 444 WWFFNRMADHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKK 503

Query: 497 HGNGARAIEL 506
           H    R +EL
Sbjct: 504 H----RHVEL 509



 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 138/330 (41%), Gaps = 72/330 (21%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            RS+HA ++  G +    ++  L  +Y K  ++  A+ LFD++  P+++    +I+ Y  
Sbjct: 241 GRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGY-- 298

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                 A+  F K                          AI+LF +M   DV+PD  + T
Sbjct: 299 ------AKNGFAKD-------------------------AIDLFHEMINKDVRPDTISIT 327

Query: 154 SVLSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
           S +SA A +   E+ + M  + +       +F S  +ALI ++ KC S         +  
Sbjct: 328 SAISACAQVGSLEQARWMDEYVSRSDYRDDVFIS--SALIDMFAKCGS---------VEC 376

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           AR VFD   +RD + W+ M+ GY            L G +      + A+    VH    
Sbjct: 377 ARSVFDRTLDRDVVVWSAMIVGY-----------GLHGQAREAISLYRAMERDGVHP--- 422

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                   ++ T+  ++ AC +SG+ R G      +   +  P  +        ++ L  
Sbjct: 423 --------NDVTFLGLLIACNHSGMVREGWWFFNRMADHKINPQQQHY----ACIIDLLG 470

Query: 333 KCGKVNEARDIFNQMPERDLVS-WNAILSA 361
           + G +++A ++   MP +  V+ W A+LSA
Sbjct: 471 RAGHLDQAYEVIKCMPVQPGVTVWGALLSA 500



 Score = 47.4 bits (111), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 2/160 (1%)

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           RQ+HA+L+  G   S      LI   +  G +  A  VF+ +P      WNA+I    ++
Sbjct: 38  RQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRN 97

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
            +   A+ +Y +M    + PD  TF  +L AC     ++ G R+        G       
Sbjct: 98  NHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMG-RFVHAQVFRLGFEADVFV 156

Query: 558 YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI-WEALLAG 596
               I L  +  +   A+ V + LP      + W A+++ 
Sbjct: 157 QNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSA 196


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/623 (37%), Positives = 351/623 (56%), Gaps = 68/623 (10%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           Q+    +K+      SVL  LI+    C  +P   + S M  A  +FD++ ++D + +  
Sbjct: 47  QIQAYTIKTNLQSDISVLTKLINF---CTLNP---TTSYMDHAHHLFDQILDKDIILFNI 100

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL--KMLMLRIQLDEFTYTSV 288
           M  GY +++                        S Y+   L  ++L   +  D++T++S+
Sbjct: 101 MARGYARSN------------------------SPYLAFSLFGELLCSGLLPDDYTFSSL 136

Query: 289 ISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
           + ACA+S   R G  +H + +    K     ++ +   L+ +Y +C  +N AR +F++  
Sbjct: 137 LKACASSKALREGMGLHCFAV----KLGLNHNIYICPTLINMYAECNDMNAARGVFDE-- 190

Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQ 408
                                        M +  ++S+  +I+G A++    E L LF +
Sbjct: 191 -----------------------------MEQPCIVSYNAIITGYARSSQPNEALSLFRE 221

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
           ++    +P D      I SCA LGAL+ G+ +H  +   G+D  +    ALI M+A+CG 
Sbjct: 222 LQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGS 281

Query: 469 VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
           +  A  +F  M   D+ +W+AMI A   HG+G +AI ++E+M +EG+ PD ITFL +L A
Sbjct: 282 LTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYA 341

Query: 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
           C+HAGLV++GR YF +M   YGI PG  HY   +DLL RAG   EA + +D L  K +  
Sbjct: 342 CSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPI 401

Query: 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648
           +W  LL+ C  HGN+++  +  E++F+L   H G YV+LSN+YA +GRW+D   +RKLM+
Sbjct: 402 LWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLYARVGRWEDVNHLRKLMK 461

Query: 649 DRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLH 708
           DRGV K PGCS +EV+N VH F   D  H  +  + + L++L+ E++ +GYVPDT  V H
Sbjct: 462 DRGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRALDELMKEIKLVGYVPDTSLVYH 521

Query: 709 -DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGRE 767
            DME + KE  L  HSEKLA+AFGL+  P G T+RV KNLRICGDCHNA K +S + GR+
Sbjct: 522 ADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRK 581

Query: 768 IVVRDGKRFHHFRDGKCSCGDYW 790
           IV+RD +RFH F DGKCSCGD+W
Sbjct: 582 IVIRDVQRFHRFEDGKCSCGDFW 604



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 122/482 (25%), Positives = 210/482 (43%), Gaps = 82/482 (17%)

Query: 43  SSGFKPREHIINRLIDIY----CKSL---KLVYARTLFDEIPQPDIVARTTLIAAYSASD 95
           SS F   E +IN+L  +     C SL   K + A T+   + Q DI   T LI   + + 
Sbjct: 17  SSAFSKNEFVINQLHPLSLLSKCTSLNELKQIQAYTIKTNL-QSDISVLTKLINFCTLNP 75

Query: 96  NVKL---AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                  A  +F++  +  +D + +N M   Y+ +++ + A  LF ++    + PD++TF
Sbjct: 76  TTSYMDHAHHLFDQ--ILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTF 133

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
           +S+L A A   +  ++ M +HC  VK G      +   LI++Y +C           M A
Sbjct: 134 SSLLKACA-SSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECND---------MNA 183

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           AR VFDEM +   +S+  ++TGY ++   + A                        REL+
Sbjct: 184 ARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLF--------------------RELQ 223

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                I+  + T  SVI +CA  G   LGK +H Y+     K   +  + VN AL+ ++ 
Sbjct: 224 --ASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYV----KKKGFDKYVKVNTALIDMFA 277

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           KCG + +A  IF  M  RD  +W+A++ A+                              
Sbjct: 278 KCGSLTDAISIFEGMRVRDTQAWSAMIVAF------------------------------ 307

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDS 451
            A +G G + + +F +M+ EG +P +  F G + +C+  G +E GR     +  + G   
Sbjct: 308 -ATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITP 366

Query: 452 SLSAGNALITMYARCG-VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
            +     ++ +  R G + EA N V         + W  +++A   HGN   A  + E++
Sbjct: 367 GIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERI 426

Query: 511 LK 512
            +
Sbjct: 427 FE 428



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 143/318 (44%), Gaps = 21/318 (6%)

Query: 311 TEAKPTPEFSLP--VNNAL--VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV--- 363
           T  KP+  FS    V N L  ++L  KC  +NE + I     + +L S  ++L+  +   
Sbjct: 12  TLTKPSSAFSKNEFVINQLHPLSLLSKCTSLNELKQIQAYTIKTNLQSDISVLTKLINFC 71

Query: 364 ----SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY 419
               +   +D A  LF+ + +++++ + +M  G A++        LF ++   G  P DY
Sbjct: 72  TLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDY 131

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
            F+  + +CA   AL  G  LH   V  G + ++     LI MYA C  + AA  VF+ M
Sbjct: 132 TFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEM 191

Query: 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
                VS+NA+I    +      A+ L+ ++    I P  +T L+V+ +C   G +  G+
Sbjct: 192 EQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGK 251

Query: 540 RYFETMHGPYGIPPGEDHYAR----FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
              E     Y    G D Y +     ID+  + G  ++A  + + +  + +   W A++ 
Sbjct: 252 WIHE-----YVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQA-WSAMIV 305

Query: 596 GCRIHGNIDLGIQAAEQL 613
               HG+    I   E++
Sbjct: 306 AFATHGDGLKAISMFEEM 323



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 155/367 (42%), Gaps = 73/367 (19%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           ++S L+ C     +   +   +H   +  G     +I   LI++Y +   +  AR +FDE
Sbjct: 133 FSSLLKACASSKALREGMG--LHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDE 190

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           + QP IV+                                 YNA+IT Y+ +S  + A+ 
Sbjct: 191 MEQPCIVS---------------------------------YNAIITGYARSSQPNEALS 217

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LFR+++  +++P + T  SV+ + AL+   +     +H  V K G   +  V  ALI ++
Sbjct: 218 LFRELQASNIEPTDVTMLSVIMSCALLGALDLG-KWIHEYVKKKGFDKYVKVNTALIDMF 276

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKN-DYLDAAREFLDGMSEN 254
            KC S         +  A  +F+ M  RD  +W+ M+  +  + D L A   F +   E 
Sbjct: 277 AKCGS---------LTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREG 327

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
           V                       + DE T+  ++ AC+++GL   G+  + Y +     
Sbjct: 328 V-----------------------RPDEITFLGLLYACSHAGLVEQGRG-YFYSMSKTYG 363

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL-VSWNAILSAYVSAGLIDEAKS 373
            TP   +     +V L  + G ++EA +  +++  +   + W  +LSA  + G ++ AK 
Sbjct: 364 ITP--GIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKR 421

Query: 374 LFEAMRE 380
           + E + E
Sbjct: 422 VIERIFE 428


>gi|297810061|ref|XP_002872914.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297318751|gb|EFH49173.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1305

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 250/764 (32%), Positives = 408/764 (53%), Gaps = 70/764 (9%)

Query: 80   DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
            D    + L+  Y    ++ LA ++F++ P   RD + +N ++     + N   A++LFR 
Sbjct: 559  DTRVVSALMGFYGRCVSLDLANKIFDEMP--KRDDLAWNEIVMVNLQSGNWEKAVKLFRV 616

Query: 140  MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
            MR    K  + T   +L   +   E   Q  Q+H  V++ G     S+ N+LI +Y    
Sbjct: 617  MRFSGAKAYDSTMVKLLQVCS-NKEGFAQGRQIHGYVLRLGFESNVSMCNSLIVMY---- 671

Query: 200  SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG--- 256
                 S    + ++R+VF+ M +R+  SW ++++ Y +  Y+D A   LD M E  G   
Sbjct: 672  -----SRNGKLESSRKVFNSMVDRNLSSWNSIVSSYTRLGYVDDAMGLLDEM-ETCGLKP 725

Query: 257  --VAWNALISGYVHRELK----MLMLRIQL-----DEFTYTSVISACANSGLFRLGKQVH 305
              V WN+L+SGY  + L      ++ RIQ+     +  + +S++ A    GL +LGK +H
Sbjct: 726  DIVTWNSLLSGYASKALSRDAIAVLKRIQIAGLKPNTSSISSLLQAVYEPGLVKLGKAIH 785

Query: 306  AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365
             Y++R +      + + V   L+ +Y K G +  AR +F+ M E+++V+WN+++S     
Sbjct: 786  GYVIRNQL----WYDVYVETTLIDMYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYT 841

Query: 366  GLIDEAKSLFEAMR---------------------------------------ERNLLSW 386
            GL+ EA++L   M                                        E N++SW
Sbjct: 842  GLLKEAEALISRMEKEGIKSNAVTWNSLVSGYATWGKTEKALAVVGKMKKNGVEPNVVSW 901

Query: 387  TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
            T ++SG ++NG    GLK+F +M+ EG  P     +  +     L  L +G+++H+  + 
Sbjct: 902  TAILSGCSKNGNFGNGLKIFLKMQEEGVSPNSATISSLLRILGCLSLLYSGKEVHSFCLK 961

Query: 447  SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
            +          AL+ MYA+ G +++A  +F  + N    SWN MI        G   I +
Sbjct: 962  NNLTRDAHVATALVDMYAKSGDLQSAAEIFWGIKNKPLASWNCMIMGYAMFRRGEEGIAV 1021

Query: 507  YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
            +  ML+ GI PD ITF +VLS C ++GLV+EG +YF+ M   YG+ P  +H +  ++LL 
Sbjct: 1022 FNAMLEAGIEPDAITFTSVLSVCKNSGLVREGWKYFDLMRSHYGVIPTIEHCSCMVELLG 1081

Query: 567  RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626
            R+G   EA D I ++P KP A IW A L+ C+IH +++L   A ++L  L PH++  Y++
Sbjct: 1082 RSGYLDEAWDFIRTMPLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSANYMM 1141

Query: 627  LSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKY 686
            + N+Y+NL RW D  R+R  M +  V+ +   SWI++D  VH+F  +  AHP+   +Y  
Sbjct: 1142 MINLYSNLNRWGDVERIRNSMSNNRVRVQDLWSWIQIDQTVHIFYAEGKAHPDEGEIYFE 1201

Query: 687  LEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKN 746
            L +LV EM+K GY+PDT+ +  ++   +KE  L  H+EKLA+ +GL+K  G A +RV+KN
Sbjct: 1202 LYKLVSEMKKSGYMPDTRCIHQNVSESEKEKLLMGHTEKLAMTYGLIKKKGIAPIRVVKN 1261

Query: 747  LRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
              +C DCH   K++S +  REIV+++G R HHFRDGKCSC + W
Sbjct: 1262 TNLCSDCHTVAKYISVLRNREIVLQEGARVHHFRDGKCSCNNSW 1305



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 123/517 (23%), Positives = 235/517 (45%), Gaps = 55/517 (10%)

Query: 20   LQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQP 79
            LQ+C  +        R +H +++  GF+    + N LI +Y ++ KL  +R +F+ +   
Sbjct: 633  LQVCSNKEGFAQ--GRQIHGYVLRLGFESNVSMCNSLIVMYSRNGKLESSRKVFNSMVDR 690

Query: 80   DIVARTTLIAAYS----ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
            ++ +  +++++Y+      D + L  EM  +T     D V +N++++ Y+  +    AI 
Sbjct: 691  NLSSWNSIVSSYTRLGYVDDAMGLLDEM--ETCGLKPDIVTWNSLLSGYASKALSRDAIA 748

Query: 136  LFRDMRRDDVKPDNFTFTSVLSAL---ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
            + + ++   +KP+  + +S+L A+    L+    K    +H  V+++       V   LI
Sbjct: 749  VLKRIQIAGLKPNTSSISSLLQAVYEPGLV----KLGKAIHGYVIRNQLWYDVYVETTLI 804

Query: 193  SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL---- 248
             +Y+K    P+         AR VFD M E++ ++W ++++G      L  A   +    
Sbjct: 805  DMYIKTGYLPY---------ARMVFDMMDEKNIVAWNSLISGLSYTGLLKEAEALISRME 855

Query: 249  -DGMSENVGVAWNALISGY-----VHREL----KMLMLRIQLDEFTYTSVISACANSGLF 298
             +G+  N  V WN+L+SGY       + L    KM    ++ +  ++T+++S C+ +G F
Sbjct: 856  KEGIKSN-AVTWNSLVSGYATWGKTEKALAVVGKMKKNGVEPNVVSWTAILSGCSKNGNF 914

Query: 299  RLGKQVHAYLLRTEAKPTPEFS-----LPVNNALVTLYWKCGKVNEARDIFNQMPERDLV 353
              G  +  +L   E   +P  +     L +   L  LY   GK   +  + N +  RD  
Sbjct: 915  --GNGLKIFLKMQEEGVSPNSATISSLLRILGCLSLLY--SGKEVHSFCLKNNLT-RDAH 969

Query: 354  SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
               A++  Y  +G +  A  +F  ++ + L SW  MI G A    GEEG+ +F+ M   G
Sbjct: 970  VATALVDMYAKSGDLQSAAEIFWGIKNKPLASWNCMIMGYAMFRRGEEGIAVFNAMLEAG 1029

Query: 414  FKPCDYAFAGAITSCAGLGALENG-RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
             +P    F   ++ C   G +  G +       H G   ++   + ++ +  R G ++ A
Sbjct: 1030 IEPDAITFTSVLSVCKNSGLVREGWKYFDLMRSHYGVIPTIEHCSCMVELLGRSGYLDEA 1089

Query: 473  NCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYE 508
                 TMP   D+  W A +++   H    R +EL E
Sbjct: 1090 WDFIRTMPLKPDATIWGAFLSSCKIH----RDLELAE 1122



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 125/498 (25%), Positives = 206/498 (41%), Gaps = 112/498 (22%)

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
           G A  VF     R+++SW          D+L+ A +F        GV    ++  +V  +
Sbjct: 474 GYASAVFFLGFPRNQVSW---------RDFLEKAEDF--------GVEKYKVLEEFVRLQ 516

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
            K     +  DE     V   CA      LG  +H  L++   +        V +AL+  
Sbjct: 517 NK----GVNFDEVVLAMVFRICAVLMYRFLGFTIHGGLIK---RGLDNSDTRVVSALMGF 569

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y +C  ++ A  IF++MP+RD ++WN I+   + +G                  +W    
Sbjct: 570 YGRCVSLDLANKIFDEMPKRDDLAWNEIVMVNLQSG------------------NW---- 607

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
                    E+ +KLF  MR  G K  D      +  C+       GRQ+H  ++  G++
Sbjct: 608 ---------EKAVKLFRVMRFSGAKAYDSTMVKLLQVCSNKEGFAQGRQIHGYVLRLGFE 658

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
           S++S  N+LI MY+R G +E++  VFN+M + +  SWN+++++  + G    A+ L ++M
Sbjct: 659 SNVSMCNSLIVMYSRNGKLESSRKVFNSMVDRNLSSWNSIVSSYTRLGYVDDAMGLLDEM 718

Query: 511 LKEGILPDRITFLTVLS-----------------------------------ACNHAGLV 535
              G+ PD +T+ ++LS                                   A    GLV
Sbjct: 719 ETCGLKPDIVTWNSLLSGYASKALSRDAIAVLKRIQIAGLKPNTSSISSLLQAVYEPGLV 778

Query: 536 KEGRRYFETMHGPYGIPPG--EDHYAR--FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
           K G+     +HG Y I      D Y     ID+  + G    A+ V D +  K +   W 
Sbjct: 779 KLGK----AIHG-YVIRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDEK-NIVAWN 832

Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPH-----HAGTYVLLSNMYANLGRWDDAARVRKL 646
           +L++G    G     ++ AE L   M       +A T+  L + YA  G+ + A  V   
Sbjct: 833 SLISGLSYTG----LLKEAEALISRMEKEGIKSNAVTWNSLVSGYATWGKTEKALAVVGK 888

Query: 647 MRDRGVKKEPG-CSWIEV 663
           M+  GV  EP   SW  +
Sbjct: 889 MKKNGV--EPNVVSWTAI 904


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/594 (38%), Positives = 351/594 (59%), Gaps = 67/594 (11%)

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           N L+++Y KC S         +  AR+VF++MP+RD ++WTT+++GY ++D    A  F 
Sbjct: 99  NTLLNMYAKCGS---------LEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFF 149

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
           +                      +ML      +EFT +SVI A A       G Q+H + 
Sbjct: 150 N----------------------QMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFC 187

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
           +    K   + ++ V +AL+ LY + G +++A+ +F+ +  R+ VSWNA           
Sbjct: 188 V----KCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNA----------- 232

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
                               +I+G A+    E+ L+LF  M  +GF+P  +++A    +C
Sbjct: 233 --------------------LIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGAC 272

Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
           +  G LE G+ +HA ++ SG      AGN L+ MYA+ G +  A  +F+ +   D VSWN
Sbjct: 273 SSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWN 332

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP 548
           +++ A  QHG G  A+  +E+M + GI P+ I+FL+VL+AC+H+GL+ EG  Y+E M   
Sbjct: 333 SLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD 392

Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
            GI P   HY   +DLL RAG  + A   I+ +P +P+A IW+ALL  CR+H N +LG  
Sbjct: 393 -GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAY 451

Query: 609 AAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVH 668
           AAE +F+L P   G +V+L N+YA+ GRW+DAARVRK M++ GVKKEP CSW+E++N +H
Sbjct: 452 AAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIH 511

Query: 669 VFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAV 728
           +F+ +D  HP+ + + +  E+++ ++++LGYVPDT  V+  ++  ++E  L  HSEK+A+
Sbjct: 512 MFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIAL 571

Query: 729 AFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDG 782
           AF L+  P G+T+ + KN+R+CGDCH A K  SKVVGREI+VRD  RFHHF+D 
Sbjct: 572 AFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDA 625



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 119/447 (26%), Positives = 199/447 (44%), Gaps = 78/447 (17%)

Query: 65  KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
           ++V+A  L   I + DIV   TL+  Y+   +++ AR++F K P   RD V +  +I+ Y
Sbjct: 80  RIVHAHIL-QSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP--QRDFVTWTTLISGY 136

Query: 125 SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM--QMHCTVVKSGTG 182
           S +     A+  F  M R    P+ FT +SV+ A A    E + C   Q+H   VK G  
Sbjct: 137 SQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAA---AERRGCCGHQLHGFCVKCGFD 193

Query: 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLD 242
               V +AL+ +Y +           LM  A+ VFD +  R+++SW  ++ G+ +    +
Sbjct: 194 SNVHVGSALLDLYTR---------YGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTE 244

Query: 243 AAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGK 302
            A E   GM          L  G+            +   F+Y S+  AC+++G    GK
Sbjct: 245 KALELFQGM----------LRDGF------------RPSHFSYASLFGACSSTGFLEQGK 282

Query: 303 QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY 362
            VHAY++++  K          N L+ +Y K G +++AR IF+++ +RD+VSWN++L+AY
Sbjct: 283 WVHAYMIKSGEK----LVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAY 338

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
              G                               +G+E +  F +MR  G +P + +F 
Sbjct: 339 AQHG-------------------------------FGKEAVWWFEEMRRVGIRPNEISFL 367

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
             +T+C+  G L+ G   +  +   G          ++ +  R G +  A      MP  
Sbjct: 368 SVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIE 427

Query: 483 DSVS-WNAMIAALGQHGN---GARAIE 505
            + + W A++ A   H N   GA A E
Sbjct: 428 PTAAIWKALLNACRMHKNTELGAYAAE 454



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 156/307 (50%), Gaps = 20/307 (6%)

Query: 308 LLRTEAKPTPEFSLPVNNALV-TLYWKC--------GKVNEARDIFNQMPERDLVSWNAI 358
           LLRT +       +P +     TL  KC        G++  A  I   +   D+V  N +
Sbjct: 43  LLRTSSNDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAH-ILQSIFRHDIVMGNTL 101

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
           L+ Y   G ++EA+ +FE M +R+ ++WT +ISG +Q+    + L  F+QM   G+ P +
Sbjct: 102 LNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNE 161

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478
           +  +  I + A       G QLH   V  G+DS++  G+AL+ +Y R G+++ A  VF+ 
Sbjct: 162 FTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDA 221

Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG 538
           + + + VSWNA+IA   +     +A+EL++ ML++G  P   ++ ++  AC+  G +++G
Sbjct: 222 LESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQG 281

Query: 539 RRYFETMHGPYGIPPGEDHYA----RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
           +     +H  Y I  GE   A      +D+  ++G   +A+ + D L  K     W +LL
Sbjct: 282 K----WVHA-YMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNSLL 335

Query: 595 AGCRIHG 601
                HG
Sbjct: 336 TAYAQHG 342



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 35/143 (24%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           YAS    C     +     + VHA+MI SG K      N L+D+Y KS  +  AR +FD 
Sbjct: 265 YASLFGACSSTGFLEQ--GKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDR 322

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           + + D+V+                                 +N+++TAY+ +  G  A+ 
Sbjct: 323 LAKRDVVS---------------------------------WNSLLTAYAQHGFGKEAVW 349

Query: 136 LFRDMRRDDVKPDNFTFTSVLSA 158
            F +MRR  ++P+  +F SVL+A
Sbjct: 350 WFEEMRRVGIRPNEISFLSVLTA 372


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/644 (37%), Positives = 351/644 (54%), Gaps = 66/644 (10%)

Query: 149 NFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
           N T+ S L +        K+  Q+    +K+       +L  LI+    C  +P  +S  
Sbjct: 22  NTTYPSSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQILTKLIN---SCTQNPTTAS-- 76

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVK-NDYLDAAREFLDGMSENVGVAWNALISGYV 267
            M  A ++F+ +P+ D + + +M  GY + N  L A   F+  ++ N             
Sbjct: 77  -MDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYN------------- 122

Query: 268 HRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327
                     +  D++T+ S++ AC  +  F+ GKQ+H   ++      P     V   L
Sbjct: 123 ----------LLPDDYTFPSLLKACVVAKAFQQGKQLHCLAIKLGLNENPY----VCPTL 168

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWT 387
           + +Y  C  V                               D A+ +F+ + E  ++S+ 
Sbjct: 169 INMYAGCNDV-------------------------------DGAQRVFDEILEPCVVSYN 197

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447
            +I+G A++    E L LF Q++    KP D      ++SCA LGAL+ G+ +H  +  +
Sbjct: 198 AIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKN 257

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
           G D  +    ALI MYA+CG ++ A  VF +M   D+ +W+AMI A   HG G   + ++
Sbjct: 258 GLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMF 317

Query: 508 EQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR 567
           E+M +  + PD ITFL +L AC+H GLV EG RYF +M   YGI PG  HY   +DLL R
Sbjct: 318 EEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGR 377

Query: 568 AGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627
           AG   EA   ID LP KP+  +W  LL+ C  HGN++L  Q   Q+ +L   H G YV+L
Sbjct: 378 AGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDSHGGDYVIL 437

Query: 628 SNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYL 687
           SN+ A  G+W+D   +RKLM  +G  K PGCS IEVDN VH F   D  H  + A+++ L
Sbjct: 438 SNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGDGVHYVSTALHRAL 497

Query: 688 EQLVLEMRKLGYVPDTKFVLH-DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKN 746
           ++LV E++ +GYVPDT  V+H DME ++KE  L  HSEKLA++FGL+  P G T+RV+KN
Sbjct: 498 DELVKELKSVGYVPDTSLVVHPDMEDEEKEITLRYHSEKLAISFGLLNTPPGTTIRVVKN 557

Query: 747 LRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           LR+CGDCH+A K +S ++ REI++RD +RFHHF+DGKCSCGDYW
Sbjct: 558 LRVCGDCHSAAKLISSLIDREIILRDVQRFHHFKDGKCSCGDYW 601



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 116/502 (23%), Positives = 210/502 (41%), Gaps = 106/502 (21%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCK---SLKLVYARTL 72
           Y S L  C P+      L + + A  I +  +    I+ +LI+   +   +  + YA  L
Sbjct: 25  YPSSLLSCLPKCTSLKEL-KQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAHQL 83

Query: 73  FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
           F+ IPQPDIV                                  +N+M   YS ++    
Sbjct: 84  FEAIPQPDIV---------------------------------LFNSMFRGYSRSNAPLK 110

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           AI LF      ++ PD++TF S+L A  ++ +  +Q  Q+HC  +K G      V   LI
Sbjct: 111 AISLFIKALNYNLLPDDYTFPSLLKA-CVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLI 169

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
           ++Y  C         + +  A+RVFDE+ E   +S+  ++TGY ++   + A        
Sbjct: 170 NMYAGC---------NDVDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEALSLF---- 216

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
                           R+L+    +++ ++ T  SV+S+CA  G   LGK +H Y+    
Sbjct: 217 ----------------RQLQ--ARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYV---- 254

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
            K   +  + VN AL+ +Y KCG ++ A  +F  M  RD  +W+A++ AY          
Sbjct: 255 KKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAY---------- 304

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
                                A +G G++ + +F +M     +P +  F G + +C+  G
Sbjct: 305 ---------------------AMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTG 343

Query: 433 ALENG-RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAM 490
            ++ G R  ++     G    +     ++ +  R G++  A    + +P     + W  +
Sbjct: 344 LVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTL 403

Query: 491 IAALGQHGNGARAIELYEQMLK 512
           +++   HGN   A ++  Q+L+
Sbjct: 404 LSSCSSHGNLELAKQVMNQILE 425


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 269/786 (34%), Positives = 405/786 (51%), Gaps = 116/786 (14%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+     L+  Y     V  A ++F+  P    + V +N+MI A+S N     + +L  +
Sbjct: 180 DVFVGNALVGMYGKCGAVDEAMKVFDFMP--ETNLVSWNSMICAFSENGFSRDSFDLLME 237

Query: 140 MRRDD-VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
           M  ++ + PD  T  ++L   A   E +   M +H   VK G      V NA++ +Y KC
Sbjct: 238 MLGEEGLLPDVVTVVTILPVCAGEGEVDIG-MGIHGLAVKLGLSEEVMVNNAMVYMYSKC 296

Query: 199 ------------------VS-SPFVSSRSLMGAARRVFDEMPER---------------- 223
                             VS +  +S+ SL G     F+ + E                 
Sbjct: 297 GYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILN 356

Query: 224 ------DELSWTTM---------------------MTGYVKNDYLDAAREFLDGMSENVG 256
                 D+L   ++                     +  Y K   L++A +   G+ +   
Sbjct: 357 VLPACLDKLQLRSLKELHGYSFRHCFQHVELSNAFILAYAKCGALNSAEKVFHGIGDKTV 416

Query: 257 VAWNALISGY---------VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY 307
            +WNALI G+         +H   +M     Q D FT +S++ ACA+    + GK++H Y
Sbjct: 417 SSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGY 476

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367
           +LR              N L                     E D     ++LS Y+  G 
Sbjct: 477 VLR--------------NGL---------------------ETDFFVGTSLLSHYIHCGK 501

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
              A+ LF+ M+++NL+SW  MISG +QNG   E L LF +   EG +  + A      +
Sbjct: 502 ASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGA 561

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
           C+ L AL  G++ H  ++ +        G ++I MYA+ G ++ +  VF+ + + +  SW
Sbjct: 562 CSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASW 621

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
           NA+I A G HG+G  AIELYE+M K G +PDR T++ +L AC HAGLV+EG +YF+ M  
Sbjct: 622 NAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQN 681

Query: 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
              I P  +HYA  ID+L RAG+  +A  +++ +P +    IW +LL  CR  G +++G 
Sbjct: 682 FNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGE 741

Query: 608 QAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKV 667
           + A++L +L P  A  YVLLSN+YA LG+WD   RVR++M++ G++K+ GCSWIEV  +V
Sbjct: 742 KVAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRV 801

Query: 668 HVFLVDDTAHP---EAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSE 724
           + F+V D+  P   E + +++ LE+ + E   +GY P+T  VLH++  ++K   L  HSE
Sbjct: 802 YSFVVGDSLQPKSAEIRVIWRRLEERISE---IGYKPNTSSVLHEVGEEEKIDILRGHSE 858

Query: 725 KLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKC 784
           KLA++FGL+K   G T+R+ KNLRIC DCHNA K +SK V REIVVRD KRFHHFRDG C
Sbjct: 859 KLAISFGLLKTTKGTTLRIYKNLRICADCHNAAKLISKAVEREIVVRDNKRFHHFRDGLC 918

Query: 785 SCGDYW 790
           SC DYW
Sbjct: 919 SCCDYW 924



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 171/665 (25%), Positives = 290/665 (43%), Gaps = 132/665 (19%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D V  T LI  Y+   +   +R +F+   ++ ++ + +NA+++ Y+ N      +++F D
Sbjct: 78  DYVLNTRLIKMYAMCGSPLDSRLVFDN--METKNLIQWNALVSGYTRNGLYGDVVKVFMD 135

Query: 140 MRRD-DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
           +  D D +PDNFTF SV+ A   I++  +    +H  V+K G  L   V NAL+ +Y KC
Sbjct: 136 LVSDTDFQPDNFTFPSVIKACGGILDV-RLGEVIHGMVIKMGLVLDVFVGNALVGMYGKC 194

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
                      +  A +VFD MPE + +SW +M+  + +N +   +R+  D + E +G  
Sbjct: 195 ---------GAVDEAMKVFDFMPETNLVSWNSMICAFSENGF---SRDSFDLLMEMLG-- 240

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                      E  +L      D  T  +++  CA  G   +G  +H   ++        
Sbjct: 241 -----------EEGLLP-----DVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSE--- 281

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
             + VNNA+V +Y KCG +NEA+  F +   +++VSWN ++SA+   G ++EA +L + M
Sbjct: 282 -EVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEM 340

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
                                        Q++ E  K  +      + +C     L + +
Sbjct: 341 -----------------------------QIQGEEMKANEVTILNVLPACLDKLQLRSLK 371

Query: 439 QLHA-QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           +LH     H      LS  NA I  YA+CG + +A  VF+ + +    SWNA+I    Q+
Sbjct: 372 ELHGYSFRHCFQHVELS--NAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQN 429

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG-ED 556
           G+  +A+ L  QM   G  PD  T  ++L AC H   ++ G+     +HG Y +  G E 
Sbjct: 430 GDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKE----IHG-YVLRNGLET 484

Query: 557 HYARFIDLLC---RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG-----------N 602
            +     LL      GK S A+ + D +  K     W A+++G   +G           +
Sbjct: 485 DFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVS-WNAMISGYSQNGLPYESLALFRKS 543

Query: 603 IDLGIQAAE-----------QLFQL-MPHHAGTYVL-------------LSNMYANLGRW 637
           +  GIQ+ E           QL  L +   A  YVL             + +MYA  G  
Sbjct: 544 LSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCI 603

Query: 638 DDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKL 697
            ++ +V   ++D+ V      SW       +  +V    H   +   +  E+    M+K+
Sbjct: 604 KESRKVFDGLKDKNV-----ASW-------NAIIVAHGIHGHGKEAIELYER----MKKV 647

Query: 698 GYVPD 702
           G +PD
Sbjct: 648 GQMPD 652



 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 122/241 (50%), Gaps = 10/241 (4%)

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGK---VNEARDIFNQMPE-----RDLVSWNAIL 359
           L+++ ++     SL    A+  L   CG    +   R +   + +      D V    ++
Sbjct: 27  LIQSHSQNAAFISLQAKEAIGLLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLI 86

Query: 360 SAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCD 418
             Y   G   +++ +F+ M  +NL+ W  ++SG  +NG   + +K+F  +  +  F+P +
Sbjct: 87  KMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDN 146

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478
           + F   I +C G+  +  G  +H  ++  G    +  GNAL+ MY +CG V+ A  VF+ 
Sbjct: 147 FTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDF 206

Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQML-KEGILPDRITFLTVLSACNHAGLVKE 537
           MP  + VSWN+MI A  ++G    + +L  +ML +EG+LPD +T +T+L  C   G V  
Sbjct: 207 MPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDI 266

Query: 538 G 538
           G
Sbjct: 267 G 267



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 149/356 (41%), Gaps = 62/356 (17%)

Query: 40  HMISSGFKPREHIINRLIDIYCKSLK-LVYARTLFDEIP----QPDIVARTTLIAAYSAS 94
            M  SG +P    I+ L+ + C  LK L Y + +   +     + D    T+L++ Y   
Sbjct: 441 QMTYSGQQPDWFTISSLL-LACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHC 499

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
                AR +F++  +K ++ V +NAMI+ YS N   + ++ LFR    + ++       S
Sbjct: 500 GKASSARVLFDR--MKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVS 557

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           V  A          C Q+  + ++ G      VL AL                       
Sbjct: 558 VFGA----------CSQL--SALRLGKEAHGYVLKAL----------------------- 582

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY-VH---RE 270
                    D     +++  Y K+  +  +R+  DG+ +    +WNA+I  + +H   +E
Sbjct: 583 ------QTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKE 636

Query: 271 LKMLMLRIQL-----DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
              L  R++      D FTY  ++ AC ++GL   G +   Y    +     E  L    
Sbjct: 637 AIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLK---YFKEMQNFNLIEPKLEHYA 693

Query: 326 ALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
            L+ +  + G++++A  + N+MPE  D   W+++L +  + G ++  + + + + E
Sbjct: 694 CLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLE 749


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 257/766 (33%), Positives = 406/766 (53%), Gaps = 49/766 (6%)

Query: 40  HMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ----PDIVARTTLIAAYSASD 95
           HM++ G        + LI   CK+  +     +   I +     +      L+  YS   
Sbjct: 123 HMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCG 182

Query: 96  NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV 155
            +K   ++F K  +  RD + +N MI+ Y        A++LF +M    V PD  T  S+
Sbjct: 183 KLKEVCQLFEK--MTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSL 240

Query: 156 LSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARR 215
           +S  A + + E    ++H  +V +   +  S+LN L+ +Y KC       +  L+     
Sbjct: 241 VSTCAKLKDLEMG-KRLHLYIVDNKLWIRGSLLNCLVDMYSKC--GKMDEAHGLLSRC-- 295

Query: 216 VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH------- 268
             DE  E D + WTT+++GYVK++ +D AR+  D M+E   V+W  ++SGYV        
Sbjct: 296 --DE-SEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCES 352

Query: 269 REL--KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
            EL  +M    +  DE    +V+SAC +   F LG+ VHA+++ T       F   + NA
Sbjct: 353 LELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIV-TYGMLVDGF---LGNA 408

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           L+ LY KCGK++EA   F Q+P +   SWN++L  +  +G +D+A+  F  + E++++SW
Sbjct: 409 LLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSW 468

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
             M++   ++    E  ++F +M+    KP        ++SCA +GAL +G  ++  +  
Sbjct: 469 NTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEK 528

Query: 447 S--GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
           +  G D+ L  G ALI MY +CG VE A  +F  +   +   W AM+AA    G    AI
Sbjct: 529 NEIGIDAML--GTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAI 586

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
           +LY +M + G+ PD +TF+ +L+AC+H GLV EG +YF  +   Y I P   HY   +DL
Sbjct: 587 DLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDL 646

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624
           L R G   E    I+ +P +P   IW +L+  CR H N++L  QA +QL ++ P + G +
Sbjct: 647 LGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAH 706

Query: 625 VLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVY 684
           VLLSN+YA+ GRWDD ++VR  + + GV K+PG + IE +  VH F+  +    +   + 
Sbjct: 707 VLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMIEQNGVVHEFVASNLVSADILCML 766

Query: 685 KYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVL 744
           + +E+ +L  ++L    DT                S HSE+LAVAFGL+     + +RV+
Sbjct: 767 QDIERRLLVKQELS---DTT---------------SQHSERLAVAFGLINNQENSPIRVV 808

Query: 745 KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            ++R+C DCH+  K +S+   REIV+RD  RFH F DG CSC DYW
Sbjct: 809 NSVRMCRDCHSVMKLISQAYDREIVIRDNYRFHRFTDGHCSCKDYW 854



 Score =  172 bits (435), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 129/502 (25%), Positives = 233/502 (46%), Gaps = 70/502 (13%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQP--DIVARTTLIAA 90
           + + +H +++ +    R  ++N L+D+Y K  K+  A  L     +   D+V  TTL++ 
Sbjct: 252 MGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSG 311

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
           Y  S+ +  AR++F+K  +  R  V +  M++ Y        ++ELF+ MR ++V PD  
Sbjct: 312 YVKSNKIDKARQLFDK--MNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEV 369

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
              +VLSA  + +E+      +H  +V  G  +   + NAL+ +Y KC           +
Sbjct: 370 ALVTVLSA-CVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKC---------GKL 419

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
             A R F+++P +   SW +M+ G+ ++  +D AR+F + + E   V+WN +++ YV  +
Sbjct: 420 DEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHD 479

Query: 271 L---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
           L         KM    ++ D+ T  S++S+CA  G    G  V+ Y+ + E         
Sbjct: 480 LFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIG----IDA 535

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
            +  AL+ +Y KCG V  A +IF Q+ E+++  W A+++AY   G   EA  L+  M ER
Sbjct: 536 MLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEER 595

Query: 382 NL----LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
            +    +++  +++  +  G  +EG K F+++R         +F   I +    G     
Sbjct: 596 GVKPDHVTFIALLAACSHGGLVDEGYKYFNKLR---------SFYNIIPTIHHYG----- 641

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQ 496
                                ++ +  R G +E        MP    VS W++++ A   
Sbjct: 642 --------------------CMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRS 681

Query: 497 HGNGARAIELYEQMLKEGILPD 518
           H N    +EL EQ  K+ I  D
Sbjct: 682 HHN----VELAEQAFKQLIEID 699



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 150/345 (43%), Gaps = 13/345 (3%)

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS----WNAILSAYVSAGLIDE 370
           P    S+   + ++ L   C  + E   I   +   +L+      + +L+  +S   +D 
Sbjct: 26  PKTSHSVLRPHWIIDLLKSCSNIREFSPIHAHLITANLIHDPEITSQVLAFLLSVNNLDC 85

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
           A  +     E   + W  ++    + G  +E L+ +  M  +G       F   I +C  
Sbjct: 86  AHQILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCK 145

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
              ++ G ++H +++  G+  + S  N L+ +Y++CG ++    +F  M + D +SWN M
Sbjct: 146 NFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTM 205

Query: 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR-YFETMHGPY 549
           I+     G    A++L+++ML  G+LPD IT ++++S C     ++ G+R +   +    
Sbjct: 206 ISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKL 265

Query: 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSAPIWEALLAGCRIHGNIDLGIQ 608
            I          +D+  + GK  EA  ++      +    +W  L++G      ID    
Sbjct: 266 WIRGSL--LNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKID---- 319

Query: 609 AAEQLFQLMPHHA-GTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
            A QLF  M   +  ++  + + Y   G + ++  + + MR   V
Sbjct: 320 KARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENV 364


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/621 (38%), Positives = 348/621 (56%), Gaps = 67/621 (10%)

Query: 170 MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWT 229
           +Q+H  +VKSG  L   V N LI+ Y K    PF S        RR F++ P++   +W+
Sbjct: 35  LQLHGYIVKSGLSLIPLVANNLINFYSKS-QLPFDS--------RRAFEDSPQKSATTWS 85

Query: 230 TMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVI 289
           ++++ + +N+    + EFL                       KM+   ++ D+    S  
Sbjct: 86  SIISCFAQNELPWMSLEFLR----------------------KMMAGSLRPDDHVLPSAT 123

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
            +C       +GK VH   ++T      +  + V ++LV +Y KCG++  AR        
Sbjct: 124 KSCGILSRCDIGKSVHCLSMKT----GYDADVFVGSSLVDMYAKCGEIVYAR-------- 171

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
                                   +F+ M  RN+++W+ M+ G AQ G  EE L LF + 
Sbjct: 172 -----------------------KMFDEMPLRNVVTWSGMMYGYAQMGENEEALWLFKEA 208

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
             E     DY+F+  I+ CA    LE GRQ+    + S +DSS   G++L+++Y++CG +
Sbjct: 209 LFENLAVNDYSFSTVISVCANSTLLELGRQIQGLCIKSSFDSSSFVGSSLVSLYSKCGDL 268

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           E A  VF+ +P  +   WNAM+ A  QH +  + IEL+++M   G+ P+ ITFL VL+AC
Sbjct: 269 EGAYQVFDEVPMRNLGIWNAMLKACAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNAC 328

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
           +HAGLV EG+ YF+ M     I P + HYA  +D+L RAGK  EA +++ ++P  P+  +
Sbjct: 329 SHAGLVDEGKYYFDLMKESR-IEPTDKHYASLVDMLGRAGKLEEALEIVTNMPIDPTESV 387

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
           W ALL  C IH N +L   AA+++F+L P  +G ++ LSN YA  GR++DAA+ RKL+RD
Sbjct: 388 WGALLTSCTIHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRD 447

Query: 650 RGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHD 709
           RG KKE G SW+E  NKVH F   +  H  ++ +Y+ L +L  EM K GYV DT +VL +
Sbjct: 448 RGEKKETGLSWVEERNKVHTFAAGERRHERSKEIYEKLAELGEEMEKAGYVADTSYVLRE 507

Query: 710 MESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIV 769
           ++ D+K   +  HSE+LA+AFGL+  P    +RV+KNLR+CGDCHNA KFMS    R I+
Sbjct: 508 VDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSICTRRVII 567

Query: 770 VRDGKRFHHFRDGKCSCGDYW 790
           VRD  RFH F DGKCSC DYW
Sbjct: 568 VRDNNRFHRFEDGKCSCNDYW 588



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 158/362 (43%), Gaps = 82/362 (22%)

Query: 3   MKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCK 62
           ++  D++   A +    L  CD        + +SVH   + +G+     + + L+D+Y K
Sbjct: 112 LRPDDHVLPSATKSCGILSRCD--------IGKSVHCLSMKTGYDADVFVGSSLVDMYAK 163

Query: 63  SLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
             ++VYAR +FDE+P                                 +R+ V ++ M+ 
Sbjct: 164 CGEIVYARKMFDEMP---------------------------------LRNVVTWSGMMY 190

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA--LIVEEEKQCMQMHCTVVKSG 180
            Y+       A+ LF++   +++  ++++F++V+S  A   ++E  +Q +Q  C  +KS 
Sbjct: 191 GYAQMGENEEALWLFKEALFENLAVNDYSFSTVISVCANSTLLELGRQ-IQGLC--IKSS 247

Query: 181 TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY 240
               + V ++L+S+Y KC           +  A +VFDE+P R+   W  M+    ++ +
Sbjct: 248 FDSSSFVGSSLVSLYSKCGD---------LEGAYQVFDEVPMRNLGIWNAMLKACAQHSH 298

Query: 241 LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRL 300
                E    M           +SG            ++ +  T+ +V++AC+++GL   
Sbjct: 299 TQKVIELFKRMK----------LSG------------MKPNFITFLNVLNACSHAGLVDE 336

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAIL 359
           GK     +  +  +PT +       +LV +  + GK+ EA +I   MP     S W A+L
Sbjct: 337 GKYYFDLMKESRIEPTDKHYA----SLVDMLGRAGKLEEALEIVTNMPIDPTESVWGALL 392

Query: 360 SA 361
           ++
Sbjct: 393 TS 394



 Score = 43.9 bits (102), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 36/185 (19%), Positives = 73/185 (39%), Gaps = 4/185 (2%)

Query: 414 FKPC-DY-AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
           F PC +Y      + S A   ++  G QLH  +V SG        N LI  Y++  +   
Sbjct: 9   FVPCHNYNQICDLLLSSARSRSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFD 68

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
           +   F   P   + +W+++I+   Q+     ++E   +M+   + PD     +   +C  
Sbjct: 69  SRRAFEDSPQKSATTWSSIISCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGI 128

Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
                 G+     +    G        +  +D+  + G+   A+ + D +P + +   W 
Sbjct: 129 LSRCDIGKS-VHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLR-NVVTWS 186

Query: 592 ALLAG 596
            ++ G
Sbjct: 187 GMMYG 191


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/619 (37%), Positives = 345/619 (55%), Gaps = 67/619 (10%)

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H + VK+     T+  N L+ +Y KC          ++  A  VFD M  R  ++WT++
Sbjct: 20  VHGSGVKACVHWKTTFCNTLLDMYAKC---------GVLDGAILVFDLMSVRTVVTWTSL 70

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           +  Y +    D A      M                 RE       +  D FT T+V+ A
Sbjct: 71  IAAYAREGLSDEAIRLFHEMD----------------RE------GVSPDIFTITTVLHA 108

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           CA +G    GK VH                                N  R+  N M + +
Sbjct: 109 CACNGSLENGKDVH--------------------------------NYIRE--NDM-QSN 133

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
           +   NA++  Y   G +++A S+F  M  ++++SW  MI G ++N    E L LF  M L
Sbjct: 134 IFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVL 193

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
           E  KP     A  + +CA L +L+ G+++H  ++ +G+ S     NAL+ MY +CGV   
Sbjct: 194 E-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVL 252

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
           A  +F+ +P  D ++W  MIA  G HG G  AI  + +M + GI PD ++F+++L AC+H
Sbjct: 253 ARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSH 312

Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
           +GL+ EG R+F  M     + P  +HYA  +DLL R+GK + A   I S+P +P A IW 
Sbjct: 313 SGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWG 372

Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
           ALL+GCRIH ++ L  + AE +F+L P + G YVLL+N YA   +W++  ++R+ +  RG
Sbjct: 373 ALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRG 432

Query: 652 VKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDME 711
           +KK PGCSWIEV +KVH+FL  +++HP+A+ +   L++L  +M++ GY P T++ L + +
Sbjct: 433 LKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEGYFPKTRYALINAD 492

Query: 712 SDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVR 771
           S QKE AL  HSEKLA+AFG++ LP   T+RV KNLR+CGDCH   KF+SK +GREIV+R
Sbjct: 493 SLQKETALCGHSEKLAMAFGILNLPPARTIRVSKNLRVCGDCHEMAKFISKTLGREIVLR 552

Query: 772 DGKRFHHFRDGKCSCGDYW 790
           D  RFHHF+DG C C  +W
Sbjct: 553 DSNRFHHFKDGVCCCRGFW 571



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 125/512 (24%), Positives = 203/512 (39%), Gaps = 107/512 (20%)

Query: 18  SQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP 77
           S LQ C   N    SL R+VH   + +    +    N L+D+Y K   L  A  +FD   
Sbjct: 3   SILQAC--ANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFD--- 57

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
                                          + +R  V + ++I AY+       AI LF
Sbjct: 58  ------------------------------LMSVRTVVTWTSLIAAYAREGLSDEAIRLF 87

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
            +M R+ V PD FT T+VL A A     E     +H  + ++       V NAL+ +Y K
Sbjct: 88  HEMDREGVSPDIFTITTVLHACACNGSLENG-KDVHNYIRENDMQSNIFVCNALMDMYAK 146

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C S         M  A  VF EMP +D +SW TM+ GY KN   + A      M      
Sbjct: 147 CGS---------MEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDM------ 191

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                            +L ++ D  T   ++ ACA+      GK+VH ++LR       
Sbjct: 192 -----------------VLEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQ 234

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
           +    V NALV +Y KCG    AR +F+ +P +DL++W  +++ Y               
Sbjct: 235 Q----VANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGY--------------- 275

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
                             +G+G   +  F++MR  G +P + +F   + +C+  G L+ G
Sbjct: 276 ----------------GMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEG 319

Query: 438 -RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALG 495
            R  +           L     ++ + AR G +  A     +MP   D+  W A+++   
Sbjct: 320 WRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCR 379

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
            H +   A ++ E + +  + P+   +  +L+
Sbjct: 380 IHHDVKLAEKVAEHVFE--LEPENTGYYVLLA 409



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 165/372 (44%), Gaps = 51/372 (13%)

Query: 286 TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFN 345
            S++ ACAN G   LG+ VH   ++                   ++WK            
Sbjct: 2   VSILQACANCGDVSLGRAVHGSGVKA-----------------CVHWK------------ 32

Query: 346 QMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKL 405
                     N +L  Y   G++D A  +F+ M  R +++WT +I+  A+ G  +E ++L
Sbjct: 33  ------TTFCNTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRL 86

Query: 406 FSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465
           F +M  EG  P  +     + +CA  G+LENG+ +H  +  +   S++   NAL+ MYA+
Sbjct: 87  FHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAK 146

Query: 466 CGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTV 525
           CG +E AN VF  MP  D +SWN MI    ++     A+ L+  M+ E + PD  T   +
Sbjct: 147 CGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLE-MKPDGTTLACI 205

Query: 526 LSACNHAGLVKEGRRYFETMHGPY---GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582
           L AC     +  G+     +HG     G    +      +D+  + G    A+ + D +P
Sbjct: 206 LPACASLASLDRGKE----VHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIP 261

Query: 583 FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ--LMPHHAGTYVLLSNMYA--NLGRWD 638
            K     W  ++AG  +HG  +  I    ++ Q  + P        +S +YA  + G  D
Sbjct: 262 TK-DLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVS---FISILYACSHSGLLD 317

Query: 639 DAARVRKLMRDR 650
           +  R   +M+D 
Sbjct: 318 EGWRFFNVMQDE 329


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 243/669 (36%), Positives = 373/669 (55%), Gaps = 45/669 (6%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           AR+ H  ++ S       ++N L+  Y +  +L  AR +FD IP  +  +   L++AY+ 
Sbjct: 36  ARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYAR 95

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA--AIELFRDMRRDDVKPDNFT 151
                 AR +F   P    D   YNA++ A + +  GHA  A+     M  DD   + ++
Sbjct: 96  LGRPDEARALFEAIPDP--DQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYS 153

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           F S LSA A   ++ +   Q+H  V +S       +  AL+ +Y KC   P         
Sbjct: 154 FASALSACA-AEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKC-ERPV-------- 203

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            ARRVFD MPER+ +SW +++T Y +N                 G    AL+       +
Sbjct: 204 DARRVFDAMPERNVVSWNSLITCYEQN-----------------GPVGEALVLF-----V 241

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
           +M+      DE T +SV+SACA     R G+QVHA++++   +      + +NNALV +Y
Sbjct: 242 EMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVK---RDRLRDDMVLNNALVDMY 298

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            KCG+  EAR IF+ MP R +VS  +IL+ Y  +  +++A+ +F  M E+N+++W V+I+
Sbjct: 299 AKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIA 358

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY-- 449
             AQNG  EE ++LF Q++ +   P  Y +   + +C  +  L+ G+Q H  ++  G+  
Sbjct: 359 AYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRF 418

Query: 450 ----DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIE 505
               +S +  GN+L+ MY + G ++    VF  M   D+VSWNAMI    Q+G    A+ 
Sbjct: 419 DFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALH 478

Query: 506 LYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLL 565
           L+E+ML     PD +T + VLSAC H+GLV EGRR+F  M   +GI P  DHY   +DLL
Sbjct: 479 LFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLL 538

Query: 566 CRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYV 625
            RAG   EA+++I  +P +P + +W +LL  CR+H N++LG + A +LF+L P ++G YV
Sbjct: 539 GRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAGRLFELDPENSGPYV 598

Query: 626 LLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYK 685
           LLSNMYA +G+W D  RVR+ M+DRGV K+PGCSWIE+ +K++VFL  D  HP    ++ 
Sbjct: 599 LLSNMYAEMGKWADVFRVRRSMKDRGVSKQPGCSWIEIGSKMNVFLARDNRHPCRNEIHS 658

Query: 686 YLEQLVLEM 694
            L  + +EM
Sbjct: 659 TLRIIQMEM 667



 Score = 47.0 bits (110), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 81/211 (38%), Gaps = 53/211 (25%)

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN--------------- 477
           +L   R  H  ++ S         N L++ YAR G +  A  VF+               
Sbjct: 32  SLPGARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLS 91

Query: 478 ----------------TMPNVDSVSWNAMIAALGQHGNG--ARAIELYEQMLKEGILPDR 519
                            +P+ D  S+NA++AAL +HG G    A+     M  +  + + 
Sbjct: 92  AYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNA 151

Query: 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY---ARFIDLLCRAGKFSEAKD 576
            +F + LSAC     ++ G    E +HG     P  D        +D+  +  +  +A+ 
Sbjct: 152 YSFASALSACAAEKDLRTG----EQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARR 207

Query: 577 VIDSLP-------------FKPSAPIWEALL 594
           V D++P             ++ + P+ EAL+
Sbjct: 208 VFDAMPERNVVSWNSLITCYEQNGPVGEALV 238


>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
          Length = 1866

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 253/685 (36%), Positives = 371/685 (54%), Gaps = 71/685 (10%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           L+  Y+   +V     +F+  P   ++ V + ++IT  +       A+  F  MRR  V 
Sbjct: 68  LLNLYAKCGSVDQTLLLFSSAPDDSKNVVSWTSLITQLTRFKRPFKALTFFNHMRRSGVY 127

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           P+++TF++VLSA            QMH  V K G      V++AL+ +Y KC        
Sbjct: 128 PNHYTFSAVLSACT-DTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCD------ 180

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              M  A +VF+EMP R+ +SW TM+ G+++N   D A  F                   
Sbjct: 181 ---MLMAEKVFEEMPVRNLVSWNTMIVGFLQNKLYDQAIFFF------------------ 219

Query: 267 VHRELKMLMLR--IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
                K L+L     LDE +++SV SACAN+G    GKQVH   L+          + +N
Sbjct: 220 -----KTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNL----VYIN 270

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
           N+L  +Y KCG                               L ++   LF     R+++
Sbjct: 271 NSLSDMYGKCG-------------------------------LFNDVAKLFSNTGARDVV 299

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
           +W +MI     N   E+    F  MR +G  P + +++  + SCA L AL  G  +H Q+
Sbjct: 300 TWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQI 359

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
           + SG+  +L   ++LITMYA+CG +  A  +F    + + V W A+IAA  QHG+    +
Sbjct: 360 IRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHGHANWVV 419

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
           EL+EQML+EGI PD ITF++VLSAC+H G V+EG  YF +M   +GI PG +HYA  +DL
Sbjct: 420 ELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACIVDL 479

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624
           L RAG+   AK  I+ +P KP A +W ALL+ CR H N+ +G + A +LF L P + G Y
Sbjct: 480 LSRAGELDRAKRFIELMPIKPDASVWGALLSACRNHSNLIMGKEVALKLFDLEPDNPGNY 539

Query: 625 VLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVY 684
           VLL N+    G  ++A  VR+ M   GV+KEPGCSWI++ N  +VF V D +H + + +Y
Sbjct: 540 VLLCNILTRNGMLNEADEVRRKMESIGVRKEPGCSWIDIKNSTYVFTVHDKSHEKTKEIY 599

Query: 685 KYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVL 744
           + LE+L   ++K GYV +T+F ++  E + KE +L  HSEK+A+AFGL+ LP GA +R+ 
Sbjct: 600 EMLEKLKELVKKKGYVAETEFAINTAE-EYKEQSLWYHSEKIALAFGLLSLPAGAPIRIK 658

Query: 745 KNLRICGDCHNAFKFMSKVVGREIV 769
           KNLR CGDCH   KF S++  REI+
Sbjct: 659 KNLRTCGDCHTVMKFASEIFAREII 683



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 120/245 (48%), Gaps = 35/245 (14%)

Query: 305 HAYLLRTEAKPTPEFSLP-VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV 363
           HA  + ++   T   SLP + N L+ LY KCG V++   +F+  P               
Sbjct: 45  HATQIHSQLITTALLSLPFLFNNLLNLYAKCGSVDQTLLLFSSAP--------------- 89

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
                D++K         N++SWT +I+ L +     + L  F+ MR  G  P  Y F+ 
Sbjct: 90  -----DDSK---------NVVSWTSLITQLTRFKRPFKALTFFNHMRRSGVYPNHYTFSA 135

Query: 424 AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
            +++C    A  +G Q+H+ +   G+ + +   +AL+ MYA+C  +  A  VF  MP  +
Sbjct: 136 VLSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRN 195

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILP-DRITFLTVLSACNHAGLVKEGRRYF 542
            VSWN MI    Q+    +AI  ++ +L E +   D ++F +V SAC +AG ++ G++  
Sbjct: 196 LVSWNTMIVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEFGKQ-- 253

Query: 543 ETMHG 547
             +HG
Sbjct: 254 --VHG 256



 Score = 48.9 bits (115), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 51/124 (41%), Gaps = 37/124 (29%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           +H  +I SGF     + + LI +Y K   LV A  +F+E    ++V  T +IAA      
Sbjct: 355 IHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAAC----- 409

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA--AIELFRDMRRDDVKPDNFTFTS 154
                                           +GHA   +ELF  M R+ +KPD  TF S
Sbjct: 410 ------------------------------QQHGHANWVVELFEQMLREGIKPDYITFVS 439

Query: 155 VLSA 158
           VLSA
Sbjct: 440 VLSA 443


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 237/592 (40%), Positives = 333/592 (56%), Gaps = 50/592 (8%)

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH----R 269
           RR+     ++D    T ++  Y +   +D AR+  D   E     WNAL          +
Sbjct: 102 RRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGK 161

Query: 270 EL-----KMLMLRIQLDEFTYTSVISACANSGL----FRLGKQVHAYLLRTEAKPTPEFS 320
           EL     +M  + I  D FTYT V+ AC  S L     + GK++HA++LR          
Sbjct: 162 ELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILR---------- 211

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
                                       E ++     +L  Y   G +  A S+F AM  
Sbjct: 212 -------------------------HGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPT 246

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK--PCDYAFAGAITSCAGLGALENGR 438
           +N +SW+ MI+  A+N    + L+LF  M LE     P        + +CAGL ALE G+
Sbjct: 247 KNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGK 306

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
            +H  ++  G DS L   NALITMY RCG +     VF+ M N D VSWN++I+  G HG
Sbjct: 307 LIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHG 366

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
            G +AI+++E M+ +G  P  I+F+TVL AC+HAGLV+EG+  FE+M   Y I PG +HY
Sbjct: 367 FGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHY 426

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
           A  +DLL RA +  EA  +I+ + F+P   +W +LL  CRIH N++L  +A+  LF+L P
Sbjct: 427 ACMVDLLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEP 486

Query: 619 HHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHP 678
            +AG YVLL+++YA    W +A  V KL+  RG++K PGCSWIEV  KV+ F+  D  +P
Sbjct: 487 RNAGNYVLLADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNP 546

Query: 679 EAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGG 738
           + + ++  L +L  EM+  GYVP T  VL+D++ ++KE  +  HSEKLAVAFGL+    G
Sbjct: 547 QIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKLAVAFGLINTVKG 606

Query: 739 ATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            T+R+ KNLR+C DCH   KF+SK   REI+VRD  RFHHF+DG CSCGDYW
Sbjct: 607 ETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFKDGVCSCGDYW 658



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 123/517 (23%), Positives = 208/517 (40%), Gaps = 118/517 (22%)

Query: 73  FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
           FD+ P       T LI  Y    ++  AR++F++T  + R    +NA+  A +    G  
Sbjct: 109 FDQDP----FLATKLINMYYELGSIDRARKVFDET--RERTIYVWNALFRALAMVGCGKE 162

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALA---LIVEEEKQCMQMHCTVVKSGTGLFTSVLN 189
            ++L+  M    +  D FT+T VL A     L V   ++  ++H  +++ G      V+ 
Sbjct: 163 LLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMT 222

Query: 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD 249
            L+ VY K  S  + +S         VF  MP ++ +SW+ M+  + KN+    A E   
Sbjct: 223 TLLDVYAKFGSVSYANS---------VFCAMPTKNFVSWSAMIACFAKNEMPMKALELF- 272

Query: 250 GMSENVGVAWNALISGYVHRELKMLMLRIQL-DEFTYTSVISACANSGLFRLGKQVHAYL 308
                               +L ML     + +  T  +V+ ACA       GK +H Y+
Sbjct: 273 --------------------QLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYI 312

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
           LR          LPV NAL+T+Y +CG++   + +F+ M  RD+VSWN+++S Y      
Sbjct: 313 LRRGLDSI----LPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIY------ 362

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
                                      +G+G++ +++F  M  +G  P   +F   + +C
Sbjct: 363 -------------------------GMHGFGKKAIQIFENMIHQGSSPSYISFITVLGAC 397

Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
           +  G +E G+ L        ++S LS                     +   P ++   + 
Sbjct: 398 SHAGLVEEGKIL--------FESMLSK--------------------YRIHPGME--HYA 427

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR----YFET 544
            M+  LG+      AI+L E M  E   P    + ++L +C     V+   R     FE 
Sbjct: 428 CMVDLLGRANRLDEAIKLIEDMHFE---PGPTVWGSLLGSCRIHCNVELAERASTLLFEL 484

Query: 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581
                  P    +Y    D+   A  +SEAK V+  L
Sbjct: 485 E------PRNAGNYVLLADIYAEAKMWSEAKSVMKLL 515



 Score = 85.9 bits (211), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 168/396 (42%), Gaps = 79/396 (19%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +HAH++  G++   H++  L+D+Y K   + YA ++F  +P  + V+ + +IA ++ 
Sbjct: 202 GKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAK 261

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD--DVKPDNFT 151
                      N+ P+K                      A+ELF+ M  +  D  P++ T
Sbjct: 262 -----------NEMPMK----------------------ALELFQLMMLEAHDSVPNSVT 288

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             +VL A A +   E Q   +H  +++ G      VLNALI++Y +C          LMG
Sbjct: 289 MVNVLQACAGLAALE-QGKLIHGYILRRGLDSILPVLNALITMYGRC-------GEILMG 340

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
             +RVFD M  RD +SW ++++ Y  + +   A +  + M               +H+  
Sbjct: 341 --QRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENM---------------IHQGS 383

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL-RTEAKPTPEFSLPVNNALVTL 330
                       ++ +V+ AC+++GL   GK +   +L +    P  E        +V L
Sbjct: 384 SP-------SYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHY----ACMVDL 432

Query: 331 YWKCGKVNEARDIFNQMP-ERDLVSWNAILSA---YVSAGLIDEAKSLFEAMRERNLLSW 386
             +  +++EA  +   M  E     W ++L +   + +  L + A +L   +  RN  ++
Sbjct: 433 LGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPRNAGNY 492

Query: 387 TVMISGLAQNGYGEEG---LKLFSQMRLEGFKPCDY 419
            ++    A+     E    +KL     L+    C +
Sbjct: 493 VLLADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSW 528



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 117/281 (41%), Gaps = 18/281 (6%)

Query: 342 DIFNQMPERDLVSWNAILSAYVSAGLI--DEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
            I    P +  + +N+ +S+ V    +  + + +L   ++  N      +I  L + G  
Sbjct: 8   QIVRHAPSQSHLCYNSHVSSRVPVSFVSLNPSANLMNDIKGNN----NQLIQSLCKGGNL 63

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
           ++ + L          P    F   I SCA   +L +G  +H +LV SG+D        L
Sbjct: 64  KQAIHLLCCEP----NPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKL 119

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           I MY   G ++ A  VF+         WNA+  AL   G G   ++LY QM   GI  DR
Sbjct: 120 INMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDR 179

Query: 520 ITFLTVLSACNHAGLVKEGRRYFETMHGP---YGIPPGEDHYARFIDLLCRAGKFSEAKD 576
            T+  VL AC  + L     +  + +H     +G           +D+  + G  S A  
Sbjct: 180 FTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANS 239

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           V  ++P K     W A++A C     + +    A +LFQLM
Sbjct: 240 VFCAMPTKNFVS-WSAMIA-CFAKNEMPM---KALELFQLM 275


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/678 (35%), Positives = 361/678 (53%), Gaps = 66/678 (9%)

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMH 173
            V Y A I+  + +     A+  F  M R  ++P++FTF S   A A          Q+H
Sbjct: 82  VVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIH 141

Query: 174 CTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMT 233
              ++ G           +  +V C +         +  AR +F EMP R+ ++W  +MT
Sbjct: 142 SLAIRFGY--------LPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMT 193

Query: 234 GYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACA 293
             V +       E   G+ E  G+                       +  +  +  +ACA
Sbjct: 194 NAVLDGRPLETIEAYFGLREAGGLP----------------------NVVSACAFFNACA 231

Query: 294 NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV 353
            +    LG+Q H ++++       E  + V N++V  Y KC    +AR            
Sbjct: 232 GAMYLSLGEQFHGFVVKCGF----EMDVSVLNSMVDFYGKCRCAGKAR------------ 275

Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
                              ++F+ M  RN +SW  M++  AQNG  EE    +   R  G
Sbjct: 276 -------------------AVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSG 316

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473
            +P D+  + A+T+CAGL  L  GR LHA  V S  D+++   +AL+ MY +CG VE A 
Sbjct: 317 EEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAE 376

Query: 474 CVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG-ILPDRITFLTVLSACNHA 532
            +F   P  + V+WNAMI      G+   A+ +++ M++ G   P+ IT + V+++C+  
Sbjct: 377 QIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRG 436

Query: 533 GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592
           GL K+G   FETM   +GI P  +HYA  +DLL RAG   +A +VI  +P +PS  +W A
Sbjct: 437 GLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGA 496

Query: 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           LL  C++HG  +LG  AAE+LF+L P  +G +VLLSNM+A+ GRW +A  +RK M++ G+
Sbjct: 497 LLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGI 556

Query: 653 KKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMES 712
           KK+PGCSW+   N VHVF   DT H     +   L +L  +M+  GY+PDT++ L+D+E 
Sbjct: 557 KKDPGCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYMPDTQYSLYDLEE 616

Query: 713 DQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRD 772
           ++KE  +  HSEKLA+AFGL+ +P G  +R++KNLRIC DCH AFKF+S +VGREI+VRD
Sbjct: 617 EEKESEVFQHSEKLALAFGLICIPPGVPIRIMKNLRICVDCHRAFKFISGIVGREIIVRD 676

Query: 773 GKRFHHFRDGKCSCGDYW 790
             RFHHF+  +CSCGDYW
Sbjct: 677 NNRFHHFKQYQCSCGDYW 694



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 112/421 (26%), Positives = 178/421 (42%), Gaps = 90/421 (21%)

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
           Y  +  +KLAR +F + P   R+ V +NA++T    +      IE +  +R     P+  
Sbjct: 164 YFKTGRLKLARHLFGEMP--NRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVV 221

Query: 151 T----FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           +    F +   A+ L + E     Q H  VVK G  +  SVLN+++  Y KC  +     
Sbjct: 222 SACAFFNACAGAMYLSLGE-----QFHGFVVKCGFEMDVSVLNSMVDFYGKCRCA----- 271

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW-NALISG 265
               G AR VFD M  R+ +SW +M+  Y +N           G  E    A+  A  SG
Sbjct: 272 ----GKARAVFDGMGVRNSVSWCSMVAAYAQN-----------GAEEEAFAAYLGARRSG 316

Query: 266 YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
                        +  +F  +S ++ CA      LG+ +HA  +R+      + ++ V +
Sbjct: 317 E------------EPTDFMVSSALTTCAGLLGLHLGRALHAVAVRS----CIDANIFVAS 360

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM-----RE 380
           ALV +Y KCG V +A  IF + P+R+LV+WNA++  Y   G    A  +F+ M       
Sbjct: 361 ALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETA 420

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSCAGLGALENGRQ 439
            N ++   +I+  ++ G  ++G +LF  MR   G +P                     R 
Sbjct: 421 PNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEP---------------------RT 459

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHG 498
            H   V              + +  R G+ E A  V   MP   S+S W A++ A   HG
Sbjct: 460 EHYACV--------------VDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHG 505

Query: 499 N 499
            
Sbjct: 506 K 506


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/610 (38%), Positives = 350/610 (57%), Gaps = 68/610 (11%)

Query: 181 TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY 240
           T L TS  N LI++Y KC S  F         AR+VFDEMP R  +SW TM+    +N  
Sbjct: 97  TDLLTS--NILINMYSKCGSVDF---------ARQVFDEMPSRSLVSWNTMIGSLTQNGE 145

Query: 241 LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRL 300
            + A + L                      L+M        EFT +SV+ ACA       
Sbjct: 146 ENEALDLL----------------------LQMQREGTPFSEFTISSVLCACAAKCALSE 183

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
            + +HA+ +    K   + ++ V  AL+ +Y KCG                         
Sbjct: 184 CQLLHAFAI----KAAMDLNVFVATALLDVYAKCG------------------------- 214

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
                 L+ +A  +FE+M +R++++W+ M +G  QN   E+ L LF +    G K   + 
Sbjct: 215 ------LMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFL 268

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
            +  I +CAGL A+  G+Q++A L  SG+ S++   ++LI MYA+CG +E +  VF  + 
Sbjct: 269 MSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVE 328

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
             + V WNAMI+ L +H      + L+E+M + G+ P+ +TF++VLSAC H GLVK+G++
Sbjct: 329 KRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQK 388

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
           YF+ M   + + P   HY+  +D L RAG+  EA D+I  LPF  SA +W +LLA CR H
Sbjct: 389 YFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTH 448

Query: 601 GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSW 660
           GN++L   AA++LF + PH++G Y+LLSNMYA  G+WD+ A++RKL+++  VKKE G SW
Sbjct: 449 GNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSW 508

Query: 661 IEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALS 720
           IE+ +KVH+F+V +  HP+   +Y  L +++ E++KLGY  +T+  LH +    K+  L 
Sbjct: 509 IEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLR 568

Query: 721 THSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFR 780
            HSEKLA   GL+ LP  A +R++KNLRICGDCH+  K  SK   R+++VRD  RFHHF+
Sbjct: 569 HHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFK 628

Query: 781 DGKCSCGDYW 790
           +G CSCGD+W
Sbjct: 629 NGCCSCGDFW 638



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/424 (26%), Positives = 192/424 (45%), Gaps = 71/424 (16%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + D++    LI  YS   +V  AR++F++ P   R  V +N MI + + N   + A++L 
Sbjct: 96  KTDLLTSNILINMYSKCGSVDFARQVFDEMP--SRSLVSWNTMIGSLTQNGEENEALDLL 153

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
             M+R+      FT +SVL A A       +C  +H   +K+   L   V  AL+ VY K
Sbjct: 154 LQMQREGTPFSEFTISSVLCACAAKCALS-ECQLLHAFAIKAAMDLNVFVATALLDVYAK 212

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C          LM  A  VF+ MP+R  ++W++M  GYV+N+  + A             
Sbjct: 213 C---------GLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRK------- 256

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
           AW    +G  H            D+F  +SVI ACA       GKQV+A L    +K   
Sbjct: 257 AWE---TGLKH------------DQFLMSSVICACAGLAAMIEGKQVNALL----SKSGF 297

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
             ++ V ++L+ +Y KCG + E+  +F  + +R++V WNA                    
Sbjct: 298 CSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNA-------------------- 337

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
                      MISGL+++    E + LF +M+  G  P D  F   +++C  +G ++ G
Sbjct: 338 -----------MISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKG 386

Query: 438 RQLHAQLVHSGYDS-SLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALG 495
           ++    +    + + ++   + ++   +R G +  A  + + +P N  +  W +++A+  
Sbjct: 387 QKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCR 446

Query: 496 QHGN 499
            HGN
Sbjct: 447 THGN 450



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 10/173 (5%)

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
           CA    L  G+  HAQ++  G  + L   N LI MY++CG V+ A  VF+ MP+   VSW
Sbjct: 74  CAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSW 133

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
           N MI +L Q+G    A++L  QM +EG      T  +VL AC     + E     + +H 
Sbjct: 134 NTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSEC----QLLHA 189

Query: 548 PYGIPPGEDH----YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
            + I    D         +D+  + G   +A  V +S+P + S   W ++ AG
Sbjct: 190 -FAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDR-SVVTWSSMAAG 240


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 257/726 (35%), Positives = 383/726 (52%), Gaps = 67/726 (9%)

Query: 65  KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
           +L++AR +              LI  YS   ++  A  +F   P   R+ V +  +++  
Sbjct: 40  RLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMP--RRNAVSWTTLVSGL 97

Query: 125 SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLF 184
           S N     A+  F  MRR  V P  F  +S   A A +        Q+HC  V+ G    
Sbjct: 98  SQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPG-AQLHCVGVRLGFDTE 156

Query: 185 TSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAA 244
             V + L  +Y KC          L+  A RVFD+MP++D ++WT M+ GY KN  L+A 
Sbjct: 157 LFVASNLADMYSKC---------GLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEA- 206

Query: 245 REFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304
                           A++S    R++K   L +  D+  + SV+SA        L K +
Sbjct: 207 ----------------AVLS---FRDMKREGL-VGADQHVFCSVLSASGGLKDGWLSKSI 246

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVS 364
           H  +     K   E  + V NAL+ +Y K   V  A  +    P      WN +      
Sbjct: 247 HCCV----TKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPG----GWNVV------ 292

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
                               S T MI G  +    EE L ++ ++R +G +P ++ F+  
Sbjct: 293 --------------------SGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSM 332

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           I  CA    LE G QLHAQ++ +        G+ L+ MY +CG++  +  +FN +     
Sbjct: 333 IKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTD 392

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
           ++WNA+I    QHG+G  AI+ +++M+  GI P+ I F+++L+AC+HAGLV EG +YF +
Sbjct: 393 IAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYS 452

Query: 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
           M   +GI P E+HY+  ID   RAG+  EA   I  +P KP+A  W +LL  CR+ G+ +
Sbjct: 453 MKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKE 512

Query: 605 LGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVD 664
           LG  AA+ L +L P + G +V LS +YA+LG+W+D   VRKLMRD  +KK PG SW++ +
Sbjct: 513 LGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSN 572

Query: 665 NKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSE 724
            K HVF  +D +HP+ + +Y+ LE+L   +++ GY+PDT F+  ++E   KE  L  HSE
Sbjct: 573 KKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSE 632

Query: 725 KLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKC 784
           ++AVAF L+ +P    + V KNLRIC DCH AFKF+ KV  R+I+VRD  RFHHF +G+C
Sbjct: 633 RIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRC 692

Query: 785 SCGDYW 790
           SCGDYW
Sbjct: 693 SCGDYW 698



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 126/253 (49%), Gaps = 38/253 (15%)

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
           S++ +C  +G  R G+ +HA L+ + A     F   + N L+T+Y  C            
Sbjct: 25  SLLQSCGRAGDLRRGRLLHARLVLSGAAAASTF---LANHLITMYSHCA----------- 70

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
               DL S                A  LF AM  RN +SWT ++SGL+QN    + L  F
Sbjct: 71  ----DLAS----------------ALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAF 110

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
           + MR  G  P  +A + A  + A LGA   G QLH   V  G+D+ L   + L  MY++C
Sbjct: 111 AAMRRAGVAPTRFALSSAARAAAALGAPLPGAQLHCVGVRLGFDTELFVASNLADMYSKC 170

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL-PDRITFLTV 525
           G++  A  VF+ MP  D+V+W AMI    ++G+   A+  +  M +EG++  D+  F +V
Sbjct: 171 GLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSV 230

Query: 526 LSACNHAGLVKEG 538
           LSA   +G +K+G
Sbjct: 231 LSA---SGGLKDG 240


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/538 (42%), Positives = 319/538 (59%), Gaps = 46/538 (8%)

Query: 264 SGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
           SGY+  +L         +ML   +  ++FTY  +I AC        GKQ+HA++L+    
Sbjct: 67  SGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLK---- 122

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
               F                               D  S N ++  YV+   +++A+ +
Sbjct: 123 ----FGFGA---------------------------DGFSLNNLIHMYVNFQSLEQARRV 151

Query: 375 FEAM--RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
           F+ M  R+RN +SW  MI+   Q+    E   LF +MRLE      +  A  +++C GLG
Sbjct: 152 FDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLG 211

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
           ALE G+ +H  +  SG +        +I MY +CG +E A+ VFN +P     SWN MI 
Sbjct: 212 ALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIG 271

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552
            L  HG G  AIEL+++M +E + PD ITF+ VLSAC H+GLV+EG+ YF+ M    G+ 
Sbjct: 272 GLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLK 331

Query: 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
           PG +H+   +DLL RAG   EA+ +I+ +P  P A +  AL+  CRIHGN +LG Q  ++
Sbjct: 332 PGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKK 391

Query: 613 LFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLV 672
           + +L PH++G YVLL+N+YA+ GRW+D A+VRKLM DRGVKK PG S IE ++ V  F+ 
Sbjct: 392 VIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIA 451

Query: 673 DDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGL 732
              AHP+A+ +Y  L++++  +R +GYVPDT  VLHD++ ++KE  L  HSEKLA+AFGL
Sbjct: 452 GGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGL 511

Query: 733 MKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +K   G T+R+ KNLRIC DCH A K +SKV  REI++RD  RFHHFR G CSC DYW
Sbjct: 512 LKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 569



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 168/388 (43%), Gaps = 79/388 (20%)

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALAL--IVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
           I ++  M    V P+ FT+  ++ A  +   +EE KQ   +H  V+K G G     LN L
Sbjct: 79  IFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQ---IHAHVLKFGFGADGFSLNNL 135

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDE--LSWTTMMTGYVKNDYLDAAREFLD 249
           I +YV   S         +  ARRVFD MP+RD   +SW  M+  YV+++ L  A    D
Sbjct: 136 IHMYVNFQS---------LEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFD 186

Query: 250 GMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
                                 +M +  + LD+F   S++SAC   G    GK +H Y+ 
Sbjct: 187 ----------------------RMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYI- 223

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLID 369
               K   E    +   ++ +Y KCG + +A ++FN++P++ + SWN             
Sbjct: 224 ---EKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNC------------ 268

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
                              MI GLA +G GE  ++LF +M  E   P    F   +++CA
Sbjct: 269 -------------------MIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACA 309

Query: 430 GLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSW 487
             G +E G+     +    G    +     ++ +  R G++E A  + N MP N D+   
Sbjct: 310 HSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVL 369

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGI 515
            A++ A   HGN     EL EQ+ K+ I
Sbjct: 370 GALVGACRIHGN----TELGEQIGKKVI 393



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 132/316 (41%), Gaps = 68/316 (21%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +HAH++  GF      +N LI +Y     L  AR +FD +PQ D             
Sbjct: 113 GKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRD------------- 159

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                             R++V +NAMI AY  ++  H A  LF  MR ++V  D F   
Sbjct: 160 ------------------RNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAA 201

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           S+LSA   +   E Q   +H  + KSG  L + +   +I +Y KC           +  A
Sbjct: 202 SMLSACTGLGALE-QGKWIHGYIEKSGIELDSKLATTVIDMYCKC---------GCLEKA 251

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
             VF+E+P++   SW  M+ G   +   +AA E    M                 RE+  
Sbjct: 252 SEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEME----------------REM-- 293

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVTLYW 332
               +  D  T+ +V+SACA+SGL   GK    Y+      KP  E        +V L  
Sbjct: 294 ----VAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHF----GCMVDLLG 345

Query: 333 KCGKVNEARDIFNQMP 348
           + G + EAR + N+MP
Sbjct: 346 RAGLLEEARKLINEMP 361


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/629 (37%), Positives = 359/629 (57%), Gaps = 53/629 (8%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           Q+H  +  SG      + N L+++Y         S    + AA  +FD MP R+ +S   
Sbjct: 90  QLHSLIFTSGCSSDKFISNHLLNLY---------SKFGELQAAVALFDRMPRRNIMSCNI 140

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLD 281
           M+  Y+    L++A+   D M +     WNA+++G    E+         +M  L    D
Sbjct: 141 MIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNELSFMPD 200

Query: 282 EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEAR 341
           E++  SV+  CA+ G    G+QVHAY++    K   E +L V  +L  +Y K G +++  
Sbjct: 201 EYSLGSVLRGCAHLGALLAGQQVHAYVM----KCGFECNLVVGCSLAHMYMKAGSMHDGE 256

Query: 342 DIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEE 401
            + N MP+  LV+                               W  ++SG AQ GY E 
Sbjct: 257 RVINWMPDCSLVA-------------------------------WNTLMSGKAQKGYFEG 285

Query: 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALIT 461
            L  +  M++ GF+P    F   I+SC+ L  L  G+Q+HA+ V +G  S +S  ++L++
Sbjct: 286 VLDQYCMMKMAGFRPDKITFVSVISSCSELAILCQGKQIHAEAVKAGASSEVSVVSSLVS 345

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           MY+RCG ++ +   F      D V W++MIAA G HG G  AI+L+ +M +E +  + IT
Sbjct: 346 MYSRCGCLQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEAIKLFNEMEQENLPGNEIT 405

Query: 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581
           FL++L AC+H GL  +G   F+ M   YG+     HY   +DLL R+G   EA+ +I S+
Sbjct: 406 FLSLLYACSHCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVDLLGRSGCLEEAEAMIRSM 465

Query: 582 PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAA 641
           P K  A IW+ LL+ C+IH N ++  + A+++ ++ P  + +YVLL+N+Y++  RW + +
Sbjct: 466 PVKADAIIWKTLLSACKIHKNAEIARRVADEVLRIDPQDSASYVLLANIYSSANRWQNVS 525

Query: 642 RVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVP 701
            VR+ M+D+ VKKEPG SW+EV N+VH F + D  HP+   + +YLE+L  E+++ GYVP
Sbjct: 526 EVRRAMKDKMVKKEPGISWVEVKNQVHQFHMGDECHPKHVEINQYLEELTSEIKRQGYVP 585

Query: 702 DTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMS 761
           DT  VLHDM++++KE  L  HSEKLA+AF LM  P G  +RV+KNLR+C DCH A K++S
Sbjct: 586 DTSSVLHDMDNEEKEQILRHHSEKLAIAFALMNTPEGVPIRVMKNLRVCSDCHVAIKYIS 645

Query: 762 KVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           ++   EI+VRD  RFHHF++G CSCGDYW
Sbjct: 646 EIKKLEIIVRDSSRFHHFKNGTCSCGDYW 674



 Score =  168 bits (426), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/276 (31%), Positives = 158/276 (57%), Gaps = 4/276 (1%)

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
           G++    +  +  I  +   +++++ AC       LGKQ+H+ L+ T    + +F   ++
Sbjct: 52  GHIREAFESFLSEIWAEPRLFSNLLQACIPLKSVSLGKQLHS-LIFTSGCSSDKF---IS 107

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
           N L+ LY K G++  A  +F++MP R+++S N ++ AY+  G ++ AK+LF+ M +RN+ 
Sbjct: 108 NHLLNLYSKFGELQAAVALFDRMPRRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVA 167

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
           +W  M++GL +    EE L LFS+M    F P +Y+    +  CA LGAL  G+Q+HA +
Sbjct: 168 TWNAMVTGLTKFEMNEEALLLFSRMNELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYV 227

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
           +  G++ +L  G +L  MY + G +     V N MP+   V+WN +++   Q G     +
Sbjct: 228 MKCGFECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSLVAWNTLMSGKAQKGYFEGVL 287

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
           + Y  M   G  PD+ITF++V+S+C+   ++ +G++
Sbjct: 288 DQYCMMKMAGFRPDKITFVSVISSCSELAILCQGKQ 323



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 128/538 (23%), Positives = 230/538 (42%), Gaps = 93/538 (17%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           +++ LQ C P   +  SL + +H+ + +SG    + I N L+++Y K  +L  A  LFD 
Sbjct: 72  FSNLLQACIPLKSV--SLGKQLHSLIFTSGCSSDKFISNHLLNLYSKFGELQAAVALFDR 129

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P+ +I++   +I AY    N++ A+ +F++ P   R+   +NAM+T  +       A+ 
Sbjct: 130 MPRRNIMSCNIMIKAYLGMGNLESAKNLFDEMP--DRNVATWNAMVTGLTKFEMNEEALL 187

Query: 136 LFRDMRRDDVKPDNFTFTSVLSAL----ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
           LF  M      PD ++  SVL       AL+  +     Q+H  V+K G      V  +L
Sbjct: 188 LFSRMNELSFMPDEYSLGSVLRGCAHLGALLAGQ-----QVHAYVMKCGFECNLVVGCSL 242

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
             +Y+K  S         M    RV + MP+   ++W T+M+G  +  Y +         
Sbjct: 243 AHMYMKAGS---------MHDGERVINWMPDCSLVAWNTLMSGKAQKGYFE--------- 284

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
                        G + +   M M   + D+ T+ SVIS+C+   +   GKQ+HA  ++ 
Sbjct: 285 -------------GVLDQYCMMKMAGFRPDKITFVSVISSCSELAILCQGKQIHAEAVKA 331

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
            A         + +       +CG + ++   F +  ERD+V W+++++AY   G  +EA
Sbjct: 332 GASSEVSVVSSLVSMYS----RCGCLQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEA 387

Query: 372 KSLFEAMRERNL----LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
             LF  M + NL    +++  ++   +  G  ++GL LF  M                  
Sbjct: 388 IKLFNEMEQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMM------------------ 429

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVS 486
                           +   G  + L     L+ +  R G +E A  +  +MP   D++ 
Sbjct: 430 ----------------VKKYGLKARLQHYTCLVDLLGRSGCLEEAEAMIRSMPVKADAII 473

Query: 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDR----ITFLTVLSACNHAGLVKEGRR 540
           W  +++A   H N   A  + +++L+  I P      +    + S+ N    V E RR
Sbjct: 474 WKTLLSACKIHKNAEIARRVADEVLR--IDPQDSASYVLLANIYSSANRWQNVSEVRR 529


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/621 (37%), Positives = 348/621 (56%), Gaps = 68/621 (10%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           ++HC V+K G      V  +L+ +Y         S   L+G AR++FD+MP RD  SW  
Sbjct: 15  KIHCLVLKLGFEWDVFVAASLVHMY---------SRFGLVGDARKLFDDMPARDRGSWNA 65

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           M++GY +N     A E LD   E                   M +  +++D  T  SV+ 
Sbjct: 66  MISGYCQNG---NAAEALDIADE-------------------MRLEGVKMDAITVASVLP 103

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
            CA  G    GK +H Y++    K   EF L V+NAL+ +Y K G               
Sbjct: 104 VCAQVGDILSGKLIHLYVI----KHGLEFELFVSNALINMYAKFGS-------------- 145

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
                            +  A+ +F  +  ++++SW  +I+G AQNG   E ++++  M 
Sbjct: 146 -----------------LGHAQKVF-GLLIKDVVSWNTLITGYAQNGLASEAIEVYLLME 187

Query: 411 L-EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
             E   P    +   + + + +GAL+ G ++H Q++ +   S +  G  LI MY +CG +
Sbjct: 188 EHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKL 247

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           + A  +F  +P  +SV WNAMI+  G HG+G +A+EL+ +M  E + PD ITF+++LSAC
Sbjct: 248 DDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSAC 307

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
           +H+GLV + +  F  M   YGI P   HY   +DL  RAG+   A + I  +P +P A  
Sbjct: 308 SHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASA 367

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
           W ALL  CRIHGNI+LG  A+E+LF++   + G YVLLSN+YAN+G+W+    VR L RD
Sbjct: 368 WGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVDDVRSLARD 427

Query: 650 RGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHD 709
           RG++K PG S I ++NKV VF   +  HP+ + +Y+ L  L  +++ +GYVPD  FVL D
Sbjct: 428 RGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIKTIGYVPDFCFVLQD 487

Query: 710 MESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIV 769
           +E D+KE+ L  HSE+LA+A+G++       +R+ KNLR+CGDCH   KF+S +  REI+
Sbjct: 488 VEEDEKEHILMGHSERLAIAYGIISTSPKTPIRIFKNLRVCGDCHTVTKFISIITEREII 547

Query: 770 VRDGKRFHHFRDGKCSCGDYW 790
           VRD  RFHHF+ G CSCGDYW
Sbjct: 548 VRDSSRFHHFKGGTCSCGDYW 568



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 118/443 (26%), Positives = 196/443 (44%), Gaps = 80/443 (18%)

Query: 59  IYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYN 118
           I+C  LKL +         + D+    +L+  YS    V  AR++F+  P   RD   +N
Sbjct: 16  IHCLVLKLGF---------EWDVFVAASLVHMYSRFGLVGDARKLFDDMP--ARDRGSWN 64

Query: 119 AMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVK 178
           AMI+ Y  N N   A+++  +MR + VK D  T  SVL   A + +     + +H  V+K
Sbjct: 65  AMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKL-IHLYVIK 123

Query: 179 SGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKN 238
            G      V NALI++Y K  S         +G A++VF  +  +D +SW T++TGY +N
Sbjct: 124 HGLEFELFVSNALINMYAKFGS---------LGHAQKVFGLLI-KDVVSWNTLITGYAQN 173

Query: 239 DYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLF 298
                A E    M E              H E       I  ++ T+ S++ A ++ G  
Sbjct: 174 GLASEAIEVYLLMEE--------------HEE-------IIPNQGTWVSILPAYSHVGAL 212

Query: 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAI 358
           + G ++H  ++    K      + V   L+ +Y KCGK+++A  +F Q+P ++ V WNA+
Sbjct: 213 QQGMRIHGQVI----KNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAM 268

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
           +S Y                                 +G GE+ L+LF +M+ E  KP  
Sbjct: 269 ISCY-------------------------------GVHGDGEKALELFREMKAERVKPDH 297

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFN 477
             F   +++C+  G + + +     +    G   SL     ++ ++ R G +E A     
Sbjct: 298 ITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIK 357

Query: 478 TMP-NVDSVSWNAMIAALGQHGN 499
            MP   D+ +W A++ A   HGN
Sbjct: 358 KMPIQPDASAWGALLNACRIHGN 380



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 112/385 (29%), Positives = 182/385 (47%), Gaps = 63/385 (16%)

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           V+ AC   G    GK++H  +L    K   E+ + V  +LV +Y + G V +AR +F+ M
Sbjct: 3   VVKAC---GDLLDGKKIHCLVL----KLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDM 55

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
           P RD  SWNA++S Y                                QNG   E L +  
Sbjct: 56  PARDRGSWNAMISGY-------------------------------CQNGNAAEALDIAD 84

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467
           +MRLEG K      A  +  CA +G + +G+ +H  ++  G +  L   NALI MYA+ G
Sbjct: 85  EMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFG 144

Query: 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK-EGILPDRITFLTVL 526
            +  A  VF  +   D VSWN +I    Q+G  + AIE+Y  M + E I+P++ T++++L
Sbjct: 145 SLGHAQKVFGLLIK-DVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSIL 203

Query: 527 SACNHAGLVKEGRRYFETMHGPY-------GIPPGEDHYARFIDLLCRAGKFSEAKDVID 579
            A +H G +++G R    +HG          +  G       ID+  + GK  +A  +  
Sbjct: 204 PAYSHVGALQQGMR----IHGQVIKNCLYSDVFVG----TCLIDMYGKCGKLDDAISLFY 255

Query: 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF--QLMPHHAGTYVLLSNMYANLGRW 637
            +P K S P W A+++   +HG+ +  ++   ++   ++ P H  T+V L +  ++ G  
Sbjct: 256 QVPRKNSVP-WNAMISCYGVHGDGEKALELFREMKAERVKPDHI-TFVSLLSACSHSGLV 313

Query: 638 DDAARVRKLMRDR-GVK---KEPGC 658
            DA     +M +  G+K   K  GC
Sbjct: 314 SDAQWCFNMMEEEYGIKPSLKHYGC 338



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 84/393 (21%), Positives = 149/393 (37%), Gaps = 101/393 (25%)

Query: 17  ASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEI 76
           AS L +C     I S   + +H ++I  G +    + N LI++Y K   L +A+ +F   
Sbjct: 99  ASVLPVCAQVGDILS--GKLIHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFG-- 154

Query: 77  PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
                                           L ++D V +N +IT Y+ N     AIE+
Sbjct: 155 --------------------------------LLIKDVVSWNTLITGYAQNGLASEAIEV 182

Query: 137 FRDMRR-DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           +  M   +++ P+  T+ S+L A +  V   +Q M++H  V+K+       V   LI +Y
Sbjct: 183 YLLMEEHEEIIPNQGTWVSILPAYSH-VGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMY 241

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY-VKNDYLDAAREFLDGMSEN 254
            KC           +  A  +F ++P ++ + W  M++ Y V  D   A   F +  +E 
Sbjct: 242 GKC---------GKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAER 292

Query: 255 VG---VAWNALISGYVHR-------------------------------------ELKML 274
           V    + + +L+S   H                                      EL+M 
Sbjct: 293 VKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMA 352

Query: 275 M-----LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
                 + IQ D   + ++++AC   G   LGK     L   +++    + L     L  
Sbjct: 353 FNFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVL-----LSN 407

Query: 330 LYWKCGK---VNEARDIFNQMPERDLVSWNAIL 359
           +Y   GK   V++ R +      R    W++I+
Sbjct: 408 IYANVGKWEGVDDVRSLARDRGLRKNPGWSSII 440


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 272/842 (32%), Positives = 413/842 (49%), Gaps = 126/842 (14%)

Query: 25  PRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKL---VYARTLFDEIPQPDI 81
           PR P      RS+ AH   S   P +             L+L   ++ R L  ++   D 
Sbjct: 31  PRYP------RSLAAHPALSSSHPSDVSALLAAAARAGDLRLGRALHRRLLRGDLLDRDA 84

Query: 82  VARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMR 141
           V   +L+  YS    V  AR +F+     +RD V + AM +  + N     ++ L  +M 
Sbjct: 85  VVANSLLTLYSRCGAVASARNVFDGMR-GLRDIVSWTAMASCLARNGAERGSLLLIGEML 143

Query: 142 RDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSS 201
              + P+   +T   +A A    E    +      +    GL+ +               
Sbjct: 144 ESGLLPN--AYTLCAAAHACFPHELYCLVGGVVLGLVHKMGLWGT--------------- 186

Query: 202 PFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNA 261
                                 D    + ++    +N  L +AR+  DG+ E   V W  
Sbjct: 187 ----------------------DVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTL 224

Query: 262 LISGYVHRE---------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
           LIS YV  E         L  L    + D +T +S+ISAC   G  RLG Q+H+  LR  
Sbjct: 225 LISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMG 284

Query: 313 AKPTPEFSLPVNNALVTLYWKCG---KVNEARDIFNQMPERDLVSWNAILSAYVSAGLID 369
                     V+  LV +Y K      ++ A  +F +MP+ D++SW A++S YV +G+ +
Sbjct: 285 LASDA----CVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQE 340

Query: 370 -EAKSLFEAMRER----NLLSWT-----------------------------------VM 389
            +  +LF  M       N ++++                                    +
Sbjct: 341 NKVMALFGEMLNESIKPNHITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVGNAL 400

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPC-----DY----------------AFAGAITSC 428
           +S  A++G  EE  ++F+Q+      PC     D+                 FA  I++ 
Sbjct: 401 VSMYAESGCMEEARRVFNQLYERSMIPCITEGRDFPLDHRIVRMDVGISSSTFASLISAA 460

Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
           A +G L  G+QLHA  + +G+ S     N+L++MY+RCG +E A   FN + + + +SW 
Sbjct: 461 ASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWT 520

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP 548
           +MI+ L +HG   RA+ L+  M+  G+ P+ +T++ VLSAC+H GLV+EG+ YF +M   
Sbjct: 521 SMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRD 580

Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
           +G+ P  +HYA  +DLL R+G   EA + I+ +P K  A +W+ LL  CR H NI++G  
Sbjct: 581 HGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEI 640

Query: 609 AAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVH 668
            A+ + +L P     YVLLSN+YA+ G WD+ AR+R  MRD  + KE G SW+EV+N  H
Sbjct: 641 TAKNVVELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTH 700

Query: 669 VFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAV 728
            F   DT+HP AQ +Y  L+ LV +++ +GYVPDT  VLHDM  + KE  L  HSEK+AV
Sbjct: 701 EFRAGDTSHPRAQDIYGKLDTLVRQIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAV 760

Query: 729 AFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788
           AFGL+       +R+ KNLR+C DCH+A K+MSK   REI++RD  RFH  +DG+CSCG+
Sbjct: 761 AFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKDGECSCGE 820

Query: 789 YW 790
           YW
Sbjct: 821 YW 822


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/628 (36%), Positives = 349/628 (55%), Gaps = 49/628 (7%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           ++H  ++K G     S    L+S Y +           L+  ARR FD+ P RD   ++ 
Sbjct: 22  RVHARLLKEGLADLPSAPALLVSAYARSC---------LLPDARRAFDDAPRRDLHLYSA 72

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQL-------DEF 283
           ++                            A +S     EL + +LR  L       D F
Sbjct: 73  LL----------------------------AAVSHSSDPELVLPLLRRMLSDDALRPDHF 104

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
              S+ SA       RLG+Q+HA+     A P    ++ V ++L+ +Y KCG   +AR +
Sbjct: 105 VLASLASAAGRLRSLRLGRQLHAHF---AASPYSADNV-VKSSLIDMYCKCGVPQDARKV 160

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
           F+ +  ++ V W A++S Y S G   EA  LF++M    L +WT +ISG  + G     +
Sbjct: 161 FDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTGAM 220

Query: 404 KLFSQMRLEGFKPCD-YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITM 462
            LF +MR +  +  D +  A  I   A L AL  GRQLH  ++  G+ SS+  GNAL+ M
Sbjct: 221 GLFVEMRRDDIRIHDAFVLATVIGGAADLAALVLGRQLHGFVMRLGFLSSMIVGNALVDM 280

Query: 463 YARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF 522
           Y++C  + +A  VF  +   D +SW  ++    QHG       LY +ML  G+ P+ +TF
Sbjct: 281 YSKCSDIHSAREVFEGITVRDVISWTTILVGEAQHGRAEEVFALYNRMLLAGMKPNEVTF 340

Query: 523 LTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582
           + ++ AC+HAGLV++GR+ F++M   YG+ PG  HY  ++DLL R+G  SEA+ +I ++P
Sbjct: 341 VGLIYACSHAGLVQKGRQLFDSMKREYGMKPGVQHYTCYLDLLSRSGYLSEAEKLITTMP 400

Query: 583 FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAAR 642
           ++P    W ALL+ C+ H +  + ++ A+ L +L P    TY+LLSN+YA   +WD  A+
Sbjct: 401 YEPDEATWGALLSACKKHNDTQMCLRVADNLLELRPKDPSTYILLSNVYAVNCKWDSVAK 460

Query: 643 VRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPD 702
           VRK+M +  ++K PG SW+E   +  +F   +      + +  +LE+LV EMRK GYVPD
Sbjct: 461 VRKIMAEMEIRKVPGYSWVEAGRESRIFHAGEVPLDVGEEITCFLEELVSEMRKRGYVPD 520

Query: 703 TKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSK 762
           T  V+HD+E  +KE  L  HSE+LAVAFG++K P G+ +RV+KNLR+CGDCH   KF+S 
Sbjct: 521 TSSVMHDLEEHEKEQHLFVHSERLAVAFGILKSPPGSVIRVVKNLRVCGDCHTVMKFISA 580

Query: 763 VVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +  R+I+VRD  RFHHF DG CSC ++W
Sbjct: 581 IAQRKIIVRDASRFHHFEDGNCSCSEFW 608



 Score =  169 bits (427), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 127/468 (27%), Positives = 213/468 (45%), Gaps = 69/468 (14%)

Query: 62  KSLKLVYARTL---FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYN 118
           ++++ V+AR L     ++P     A   L++AY+ S  +  AR  F+  P   RD   Y+
Sbjct: 18  RAVRRVHARLLKEGLADLPS----APALLVSAYARSCLLPDARRAFDDAP--RRDLHLYS 71

Query: 119 AMITAYSHNSNGHAAIELFRDMRRDD-VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVV 177
           A++ A SH+S+    + L R M  DD ++PD+F   S+ SA A  +   +   Q+H    
Sbjct: 72  ALLAAVSHSSDPELVLPLLRRMLSDDALRPDHFVLASLASA-AGRLRSLRLGRQLHAHFA 130

Query: 178 KSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK 237
            S       V ++LI +Y KC          +   AR+VFD +  ++ + WT +++GY  
Sbjct: 131 ASPYSADNVVKSSLIDMYCKC---------GVPQDARKVFDSIGVKNSVVWTALISGYAS 181

Query: 238 NDYLDAAREFLDGMSENVGVAWNALISGYVHR-----------ELKMLMLRIQLDEFTYT 286
           N     A +    M  +    W ALISG+V             E++   +RI  D F   
Sbjct: 182 NGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIH-DAFVLA 240

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
           +VI   A+     LG+Q+H +++R         S+ V NALV +Y KC  ++ AR++F  
Sbjct: 241 TVIGGAADLAALVLGRQLHGFVMRLGFLS----SMIVGNALVDMYSKCSDIHSAREVFEG 296

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
           +  RD++SW  IL                                G AQ+G  EE   L+
Sbjct: 297 ITVRDVISWTTIL-------------------------------VGEAQHGRAEEVFALY 325

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYAR 465
           ++M L G KP +  F G I +C+  G ++ GRQL   +    G    +      + + +R
Sbjct: 326 NRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGVQHYTCYLDLLSR 385

Query: 466 CGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
            G +  A  +  TMP   D  +W A+++A  +H +    + + + +L+
Sbjct: 386 SGYLSEAEKLITTMPYEPDEATWGALLSACKKHNDTQMCLRVADNLLE 433



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 160/335 (47%), Gaps = 47/335 (14%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R +HAH  +S +     + + LID+YCK      AR +FD I   + V  T LI+ Y+
Sbjct: 121 LGRQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYA 180

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK-PDNFT 151
           ++     A ++F   P     T  + A+I+ +    N   A+ LF +MRRDD++  D F 
Sbjct: 181 SNGCTGEALDLFQSMPAHGLFT--WTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFV 238

Query: 152 FTSVLSA---LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
             +V+     LA +V       Q+H  V++ G      V NAL+ +Y KC         S
Sbjct: 239 LATVIGGAADLAALVLGR----QLHGFVMRLGFLSSMIVGNALVDMYSKC---------S 285

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
            + +AR VF+ +  RD +SWTT++ G  ++           G +E V   +N        
Sbjct: 286 DIHSAREVFEGITVRDVISWTTILVGEAQH-----------GRAEEVFALYN-------- 326

Query: 269 RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNAL 327
              +ML+  ++ +E T+  +I AC+++GL + G+Q+   + R    KP  +         
Sbjct: 327 ---RMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGVQH----YTCY 379

Query: 328 VTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
           + L  + G ++EA  +   MP E D  +W A+LSA
Sbjct: 380 LDLLSRSGYLSEAEKLITTMPYEPDEATWGALLSA 414



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 14/208 (6%)

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           R++HA+L+  G     SA   L++ YAR  ++  A   F+  P  D   ++A++AA+   
Sbjct: 21  RRVHARLLKEGLADLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHS 80

Query: 498 GNGARAIELYEQMLKEGIL-PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP-GE 555
            +    + L  +ML +  L PD     ++ SA      ++ GR+    +H  +   P   
Sbjct: 81  SDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQ----LHAHFAASPYSA 136

Query: 556 DHYAR--FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
           D+  +   ID+ C+ G   +A+ V DS+  K S  +W AL++G   +G        A  L
Sbjct: 137 DNVVKSSLIDMYCKCGVPQDARKVFDSIGVKNSV-VWTALISGYASNGCTG----EALDL 191

Query: 614 FQLMPHHA-GTYVLLSNMYANLGRWDDA 640
           FQ MP H   T+  L + +   G +  A
Sbjct: 192 FQSMPAHGLFTWTALISGFVKAGNYTGA 219


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/522 (40%), Positives = 325/522 (62%), Gaps = 10/522 (1%)

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
           +++L   I  +EFT++S++ +C+     + GK +H ++L+      P     V   LV +
Sbjct: 119 VQLLSSEINPNEFTFSSLLKSCST----KSGKLIHTHVLKFGLGIDPY----VATGLVDV 170

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y K G V  A+ +F++MPER LVS  A+++ Y   G ++ A++LF++M ER+++SW VMI
Sbjct: 171 YAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMI 230

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGF-KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
            G AQ+G+  + L LF ++  EG  KP +     A+++C+ +GALE GR +H  +  S  
Sbjct: 231 DGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRI 290

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
             ++     LI MY++CG +E A  VFN  P  D V+WNAMIA    HG    A+ L+ +
Sbjct: 291 RLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNE 350

Query: 510 MLK-EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568
           M    G+ P  ITF+  L AC HAGLV EG R FE+M   YGI P  +HY   + LL RA
Sbjct: 351 MQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRA 410

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628
           G+   A + I ++     + +W ++L  C++HG+  LG + AE L  L   ++G YVLLS
Sbjct: 411 GQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLS 470

Query: 629 NMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLE 688
           N+YA++G ++  A+VR LM+++G+ KEPG S IE++NKVH F   D  H +++ +Y  L 
Sbjct: 471 NIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLR 530

Query: 689 QLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLR 748
           ++   ++  GYVP+T  VL D+E  +KE +L  HSE+LA+A+GL+    G+ +++ KNLR
Sbjct: 531 KISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLR 590

Query: 749 ICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +C DCH   K +SK+ GR+IV+RD  RFHHF DG CSCGD+W
Sbjct: 591 VCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632



 Score =  166 bits (419), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 117/437 (26%), Positives = 201/437 (45%), Gaps = 68/437 (15%)

Query: 90  AYSASDNVKLAREMFNKT--PLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147
           AY++   ++ +  +F++T  P    D   + A I   S N     A  L+  +   ++ P
Sbjct: 73  AYASHGKIRHSLALFHQTIDP----DLFLFTAAINTASINGLKDQAFLLYVQLLSSEINP 128

Query: 148 DNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSR 207
           + FTF+S+L + +      K    +H  V+K G G+   V   L+ VY K      VS  
Sbjct: 129 NEFTFSSLLKSCS-----TKSGKLIHTHVLKFGLGIDPYVATGLVDVYAK--GGDVVS-- 179

Query: 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV 267
                A++VFD MPER  +S T M+T Y K   ++AAR   D M E   V+WN +I GY 
Sbjct: 180 -----AQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYA 234

Query: 268 HREL--KMLMLRIQL--------DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                   LML  +L        DE T  + +SAC+  G    G+ +H ++  +  +   
Sbjct: 235 QHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIR--- 291

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
             ++ V   L+ +Y KCG + EA  +FN  P +D+V+WNA+++ Y               
Sbjct: 292 -LNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGY--------------- 335

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR-LEGFKPCDYAFAGAITSCAGLGALEN 436
                           A +GY ++ L+LF++M+ + G +P D  F G + +CA  G +  
Sbjct: 336 ----------------AMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNE 379

Query: 437 GRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAA-NCVFNTMPNVDSVSWNAMIAAL 494
           G ++   +    G    +     L+++  R G ++ A   + N   + DSV W++++ + 
Sbjct: 380 GIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSC 439

Query: 495 GQHGNGARAIELYEQML 511
             HG+     E+ E ++
Sbjct: 440 KLHGDFVLGKEIAEYLI 456



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 155/349 (44%), Gaps = 46/349 (13%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           ++S L+ C  ++       + +H H++  G     ++   L+D+Y K   +V A+ +FD 
Sbjct: 133 FSSLLKSCSTKS------GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDR 186

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P+  +V+ T +I  Y+   NV+ AR +F+   +  RD V +N MI  Y+ +   + A+ 
Sbjct: 187 MPERSLVSSTAMITCYAKQGNVEAARALFDS--MCERDIVSWNVMIDGYAQHGFPNDALM 244

Query: 136 LFRDMRRD-DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
           LF+ +  +   KPD  T  + LSA + I   E     +H  V  S   L   V   LI +
Sbjct: 245 LFQKLLAEGKPKPDEITVVAALSACSQIGALETG-RWIHVFVKSSRIRLNVKVCTGLIDM 303

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           Y KC S         +  A  VF++ P +D ++W  M+ GY  + Y   A    + M   
Sbjct: 304 YSKCGS---------LEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGI 354

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA- 313
            G                     +Q  + T+   + ACA++GL   G ++   + +    
Sbjct: 355 TG---------------------LQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGI 393

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
           KP  E        LV+L  + G++  A +    M  + D V W+++L +
Sbjct: 394 KPKIEHY----GCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGS 438



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 162/384 (42%), Gaps = 56/384 (14%)

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV------SWNAIL-SAYVSAGLI 368
           T  F LP    L  L  K   V+E   I   +   +L+        N  L  AY S G I
Sbjct: 21  TARFRLPPPEKLAVLIDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKI 80

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
             + +LF    + +L  +T  I+  + NG  ++   L+ Q+      P ++ F+  + SC
Sbjct: 81  RHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSC 140

Query: 429 AGLGALENGRQLHAQLVHSGY-------------------------------DSSLSAGN 457
               + ++G+ +H  ++  G                                + SL +  
Sbjct: 141 ----STKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSST 196

Query: 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI-L 516
           A+IT YA+ G VEAA  +F++M   D VSWN MI    QHG    A+ L++++L EG   
Sbjct: 197 AMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPK 256

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
           PD IT +  LSAC+  G ++ G R+         I          ID+  + G   EA  
Sbjct: 257 PDEITVVAALSACSQIGALETG-RWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVL 315

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG------TYVLLSNM 630
           V +  P K     W A++AG  +HG      Q A +LF  M    G      T++     
Sbjct: 316 VFNDTPRKDIVA-WNAMIAGYAMHGY----SQDALRLFNEMQGITGLQPTDITFIGTLQA 370

Query: 631 YANLGRWDDAARVRKLM-RDRGVK 653
            A+ G  ++  R+ + M ++ G+K
Sbjct: 371 CAHAGLVNEGIRIFESMGQEYGIK 394


>gi|225441064|ref|XP_002277923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Vitis vinifera]
          Length = 882

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 268/774 (34%), Positives = 403/774 (52%), Gaps = 96/774 (12%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L   +HA +I  GF     + N L+ +Y K   L     LFDE+P  DI +  T+I++  
Sbjct: 189 LGCQLHAIVIKMGFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISS-- 246

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR-DDVKPDNFT 151
                 + +EM  +                          A ELFRDMRR D  + D+FT
Sbjct: 247 ------VVKEMMYER-------------------------AFELFRDMRRIDGFRIDHFT 275

Query: 152 FTSVLSA---LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
            +++L A   LA +V  E     +H  V+K G     SV+NALI  Y KC S   V +  
Sbjct: 276 LSTILVAARGLASMVGRE-----IHAHVIKIGFESNISVINALIRFYTKCGSIKHVVA-- 328

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
                  +F++M  RD ++WT M+T Y++    D A E  D M     +++NA++SG+  
Sbjct: 329 -------LFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNAILSGFCQ 381

Query: 269 RE---------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                       +M+   ++L +FT T V++AC      ++ KQ+H ++L+         
Sbjct: 382 NGEGSKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQIHGFILKFGFGSNA-- 439

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
              +  AL+ +  +CG++ +A+ +F+Q                              +  
Sbjct: 440 --CIEAALLDMCTRCGRMADAQKMFSQG-----------------------------SFS 468

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS-CAGLGALENGR 438
           +   + WT MI G A+N   EE + LF Q +LEG    D   + A+   C  L   E G+
Sbjct: 469 QSGSIIWTSMICGYARNAQPEEAISLFCQSQLEGAMVVDKVASTAVLGVCGTLAFHEMGK 528

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           Q+H   + SG+ S L  GN++ITMY++C  ++ A  VFN MP  D VSWN +IA    H 
Sbjct: 529 QIHCHALKSGFLSDLGVGNSIITMYSKCSNMDDAIKVFNVMPAHDIVSWNGLIAGHLLHR 588

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNH--AGLVKEGRRYFETMHGPYGIPPGED 556
            G  A+ ++ +M K GI PD +TF+ ++SA  H  + LV   RR F +M   Y I P  +
Sbjct: 589 QGDEALSVWSKMEKAGIKPDTVTFVLIISAYRHTNSNLVDNCRRLFLSMKTIYHIDPTVE 648

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           HY   + +L   G   EA+++I+ +P +P A +W ALL  CRIH N  +G +AA+ L  +
Sbjct: 649 HYTSLVGVLGYWGLLEEAEEMINKMPIEPEASVWRALLDACRIHSNTTIGKRAAKHLLAM 708

Query: 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTA 676
            P    TY+L+SN+Y+  GRW  +  VR+ MR +G +K PG SWI  +NKVH F   D +
Sbjct: 709 KPLDPSTYILVSNLYSAYGRWHCSDMVREEMRVKGFRKHPGRSWIIHENKVHSFYARDKS 768

Query: 677 HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLP 736
           HP+A+ ++  LE L++E  K GYVPDT FVLH++E  QK+  L  HS K+A  +GL+   
Sbjct: 769 HPQAKDIHSGLELLIMECLKAGYVPDTSFVLHEVEEHQKKDFLFYHSAKIAATYGLLMTR 828

Query: 737 GGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            G  +R++KN+ +CGDCH   K++S V GREI +RD    H F +G+CSC DYW
Sbjct: 829 PGRPIRIVKNILLCGDCHTFLKYVSIVTGREIFLRDASGHHCFLNGQCSCKDYW 882



 Score =  192 bits (488), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 148/560 (26%), Positives = 260/560 (46%), Gaps = 52/560 (9%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           DI     LI AY     V  A ++F    L   + V Y AMI+ ++ ++    A+E+F  
Sbjct: 104 DIHLANALIVAYLKLGMVPNAYKVF--VGLSCPNVVSYTAMISGFAKSNRERQAMEIFFR 161

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           MR   ++ + F+F ++L+    +++ E  C Q+H  V+K G   +T V NAL+ +Y KC 
Sbjct: 162 MRSSGIELNEFSFVAILTVCIRLLDLELGC-QLHAIVIKMGFLNYTFVSNALMGLYGKC- 219

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                     + +  ++FDEMP RD  SW T+++  VK    + A E    M        
Sbjct: 220 --------GYLDSVLQLFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMRR------ 265

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
              I G+            ++D FT ++++ A A      +G+++HA++++       E 
Sbjct: 266 ---IDGF------------RIDHFTLSTILVA-ARGLASMVGREIHAHVIKIGF----ES 305

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
           ++ V NAL+  Y KCG +     +F +M  RD+++W  +++AY+  GL D A  +F+ M 
Sbjct: 306 NISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMP 365

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
            RN +S+  ++SG  QNG G + L  F +M  EG +  D+   G + +C  L   +  +Q
Sbjct: 366 ARNSISYNAILSGFCQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQ 425

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN--CVFNTMPNVDSVSWNAMIAALGQH 497
           +H  ++  G+ S+     AL+ M  RCG +  A       +     S+ W +MI    ++
Sbjct: 426 IHGFILKFGFGSNACIEAALLDMCTRCGRMADAQKMFSQGSFSQSGSIIWTSMICGYARN 485

Query: 498 GNGARAIELYEQMLKEG-ILPDRITFLTVLSACNHAGLVKEGRR-YFETMHGPYGIPPGE 555
                AI L+ Q   EG ++ D++    VL  C      + G++ +   +   +    G 
Sbjct: 486 AQPEEAISLFCQSQLEGAMVVDKVASTAVLGVCGTLAFHEMGKQIHCHALKSGFLSDLGV 545

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI--WEALLAGCRIH--GNIDLGIQAAE 611
            +      ++    K S   D I      P+  I  W  L+AG  +H  G+  L + +  
Sbjct: 546 GN-----SIITMYSKCSNMDDAIKVFNVMPAHDIVSWNGLIAGHLLHRQGDEALSVWSKM 600

Query: 612 QLFQLMPHHAGTYVLLSNMY 631
           +   + P    T+VL+ + Y
Sbjct: 601 EKAGIKPDTV-TFVLIISAY 619



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 124/484 (25%), Positives = 219/484 (45%), Gaps = 77/484 (15%)

Query: 29  ITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLI 88
           + S + R +HAH+I  GF+    +IN LI  Y K   + +   LF+++   D++  T +I
Sbjct: 286 LASMVGREIHAHVIKIGFESNISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMI 345

Query: 89  AAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPD 148
            AY       LA E+F+K P   R+++ YNA+++ +  N  G  A+  F  M  + V+  
Sbjct: 346 TAYMEFGLTDLALEVFDKMP--ARNSISYNAILSGFCQNGEGSKALAFFCRMVEEGVELT 403

Query: 149 NFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
           +FT T VL+A  L++ E K   Q+H  ++K G G    +  AL+ +  +C          
Sbjct: 404 DFTLTGVLNACGLLM-EAKISKQIHGFILKFGFGSNACIEAALLDMCTRC---------G 453

Query: 209 LMGAARRV--FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
            M  A+++       +   + WT+M+ GY +N   + A                  IS +
Sbjct: 454 RMADAQKMFSQGSFSQSGSIIWTSMICGYARNAQPEEA------------------ISLF 495

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
              +L+  M+   +D+   T+V+  C       +GKQ+H + L++         L V N+
Sbjct: 496 CQSQLEGAMV---VDKVASTAVLGVCGTLAFHEMGKQIHCHALKSGFLS----DLGVGNS 548

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           ++T+Y KC  +++A  +FN MP  D+VSWN                              
Sbjct: 549 IITMYSKCSNMDDAIKVFNVMPAHDIVSWNG----------------------------- 579

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA--LENGRQLHAQL 444
             +I+G   +  G+E L ++S+M   G KP    F   I++     +  ++N R+L   +
Sbjct: 580 --LIAGHLLHRQGDEALSVWSKMEKAGIKPDTVTFVLIISAYRHTNSNLVDNCRRLFLSM 637

Query: 445 VHSGY-DSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN--- 499
               + D ++    +L+ +    G++E A  + N MP   ++  W A++ A   H N   
Sbjct: 638 KTIYHIDPTVEHYTSLVGVLGYWGLLEEAEEMINKMPIEPEASVWRALLDACRIHSNTTI 697

Query: 500 GARA 503
           G RA
Sbjct: 698 GKRA 701


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 252/714 (35%), Positives = 388/714 (54%), Gaps = 44/714 (6%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+    +LI  Y+A   V L R++F++  +  R+ V + ++I  YS  +    A+ LF +
Sbjct: 156 DLFVANSLIHFYAACGKVDLGRKVFDE--MLERNVVSWTSLINGYSVVNMAKEAVCLFFE 213

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEE---KQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           M    V+P+  T    +SA A + + E   K C  M    VKS T     V+NAL+ +Y+
Sbjct: 214 MVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNT----LVVNALLDMYM 269

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           KC           M A R +FDE  +++ + + T+M+ YV++           G++  V 
Sbjct: 270 KCGD---------MYAVREIFDEFSDKNLVMYNTIMSNYVQH-----------GLAGEVL 309

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
           V  +           +ML    + D+ T  S I+ACA  G   +GK  HAY+ R   +  
Sbjct: 310 VVLD-----------EMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERL 358

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
              S    NA++ +Y KCGK   A  +F+ M  + +V+WN++++  V  G ++ A  +F 
Sbjct: 359 DNIS----NAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFG 414

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
            M E NL+SW  MI  + Q    EE + L  +M+ +G K       G  ++C  LGAL+ 
Sbjct: 415 EMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDL 474

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
            + ++  +  +     +  G AL+ M++RCG    A  VF  M   D  +W A I     
Sbjct: 475 AKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAV 534

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
            GN   AIEL+++MLK+ +  D   F+ +L+A +H G V +GR+ F  M   +G+ P   
Sbjct: 535 EGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIV 594

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           HY   +DLL RAG   EA D++ S+P KP+  IW + LA CR H N++    A E++ QL
Sbjct: 595 HYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQL 654

Query: 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTA 676
            P   G +VLLSN+YA+ G+W+D ARVR  M+++G +K  G S IEV   +  F   D +
Sbjct: 655 APEKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDES 714

Query: 677 HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLP 736
           H E   +   L+++   + ++GYVPDT  VL D++  +KE+ LS HSEKLA+A+GL+   
Sbjct: 715 HTENAQIGLMLQEINCRISQVGYVPDTTNVLVDVDEQEKEHLLSRHSEKLAMAYGLINTG 774

Query: 737 GGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            G  +RV+KNLR+C DCH+  K +SK+ GREI VRD  R+H F++G CSC D+W
Sbjct: 775 KGIPIRVVKNLRMCSDCHSFAKLVSKLYGREITVRDNNRYHFFKEGFCSCRDFW 828


>gi|222632633|gb|EEE64765.1| hypothetical protein OsJ_19621 [Oryza sativa Japonica Group]
          Length = 656

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/613 (38%), Positives = 348/613 (56%), Gaps = 51/613 (8%)

Query: 224 DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV----HRELKMLMLRIQ 279
           D + +  ++  YVK   L  AR+  D M     V+ N L+SGY     HR+  + +LR+ 
Sbjct: 49  DVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGYASSGRHRD-ALALLRVA 107

Query: 280 ---LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
              L+E+  +S ++A A+   + +G+Q H Y ++      P     V +A++ +Y +C  
Sbjct: 108 DFGLNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEHPY----VCSAVLHMYCQCAH 163

Query: 337 VNEA--------------------RDIFNQMPERDLVSWNAI----------LSAYVSAG 366
           ++EA                    R + +    +++V  + +          L+ YV + 
Sbjct: 164 MDEAVKYSKKHGEKCRAMGSCVICRVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSA 223

Query: 367 LID---------EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
           L+D         EA  +FE + E+N++SWT +++   QN   E+ L+LF  M +EG +P 
Sbjct: 224 LVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPN 283

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
           ++ +A A+ SCAGL  L+NG  L A  + +G+   L   NAL+ MY++ G VE A  VF 
Sbjct: 284 EFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFL 343

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKE 537
           +MP  D VSWN++I     HG    A+E +  ML    +P  +TF+ VLSAC   GLV E
Sbjct: 344 SMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLVDE 403

Query: 538 GRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
           G  Y   M    G+ PG++HY   + LLCR G+  EA+  I+S         W +LL+ C
Sbjct: 404 GFYYLNIMMKEVGVKPGKEHYTCMVGLLCRVGRLDEAERFIESNCIGTDVVAWRSLLSSC 463

Query: 598 RIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPG 657
           +++ N  LG + AEQ+FQL P   GTYVLLSNMYA   RWD   +VR+LMR+ GV+KEPG
Sbjct: 464 QVYRNYGLGHRVAEQIFQLKPKDVGTYVLLSNMYAKANRWDGVVKVRRLMRELGVRKEPG 523

Query: 658 CSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEY 717
            SWI+V ++VHVF  +D  HP  + + K L++L+ +++ +GYVP+    LHD+E +QKE 
Sbjct: 524 VSWIQVGSEVHVFTSEDKKHPYMEQITKKLQELIDKIKVIGYVPNIAVALHDVEDEQKEE 583

Query: 718 ALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFH 777
            L  HSEKLA+AFGL++ P G  +R++KN+RIC DCH A K +S   GR IVVRD  RFH
Sbjct: 584 HLMYHSEKLALAFGLIRTPKGEAIRIMKNVRICDDCHVAIKLISLATGRRIVVRDTVRFH 643

Query: 778 HFRDGKCSCGDYW 790
              DG CSC DYW
Sbjct: 644 CIEDGVCSCDDYW 656



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 123/534 (23%), Positives = 218/534 (40%), Gaps = 110/534 (20%)

Query: 32  SLARSVHAHMISSG-FKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
           SL ++VHA ++ +  F   ++  N LI +Y K  +L  AR +FD +P  + V+   L++ 
Sbjct: 33  SLGKAVHARVVRAARFDVVQY--NNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSG 90

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
           Y++S   + A  +       + + V  +A + A +H  +     +      +  +    +
Sbjct: 91  YASSGRHRDALALLRVADFGLNEYVLSSA-VAATAHVRSYDMGRQCHGYAIKAGLAEHPY 149

Query: 151 TFTSVL----------SALALIVEEEKQCMQM----------HCTVVKS---GTGLFTSV 187
             ++VL           A+    +  ++C  M          HC   K    G+ + T  
Sbjct: 150 VCSAVLHMYCQCAHMDEAVKYSKKHGEKCRAMGSCVICRVLGHCASTKEVVLGSQVHTQA 209

Query: 188 L-----------NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV 236
           L           +AL+ +Y KC              A RVF+ +PE++ +SWT +MT Y 
Sbjct: 210 LKRRLELNVYVGSALVDMYGKC---------DFPHEANRVFEVLPEKNIVSWTAIMTAYT 260

Query: 237 KND-YLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
           +N+ + DA + FLD                       M M  ++ +EFTY   +++CA  
Sbjct: 261 QNELFEDALQLFLD-----------------------MEMEGVRPNEFTYAVALNSCAGL 297

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
              + G  + A  ++T         LPV NAL+ +Y K G V +AR +F  MP RD+VSW
Sbjct: 298 ATLKNGNALGACTMKTGHWGL----LPVCNALMNMYSKSGSVEDARRVFLSMPCRDVVSW 353

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           N+I                               I G A +G   E ++ F  M      
Sbjct: 354 NSI-------------------------------IIGYAHHGRAREAMEAFHDMLFAEEV 382

Query: 416 PCDYAFAGAITSCAGLGALENG-RQLHAQLVHSGYDSSLSAGNALITMYARCGVV-EAAN 473
           P    F G +++CA LG ++ G   L+  +   G          ++ +  R G + EA  
Sbjct: 383 PSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMVGLLCRVGRLDEAER 442

Query: 474 CVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
            + +     D V+W +++++   + N      + EQ+ +  + P  +    +LS
Sbjct: 443 FIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQ--LKPKDVGTYVLLS 494



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 178/405 (43%), Gaps = 57/405 (14%)

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
           G   LGK VHA ++R        F +   N L+ LY KCG++  AR +F+ MP R+ VS 
Sbjct: 30  GELSLGKAVHARVVRA-----ARFDVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSG 84

Query: 356 NAILSAYVSAGLIDEAKSLFE----AMRERNLLSWT------------------VMISGL 393
           N ++S Y S+G   +A +L       + E  L S                     + +GL
Sbjct: 85  NLLMSGYASSGRHRDALALLRVADFGLNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGL 144

Query: 394 AQNGY-GEEGLKLFSQM---------------RLEGFKPCDYAFAGAITSCAGLGALENG 437
           A++ Y     L ++ Q                +      C       +  CA    +  G
Sbjct: 145 AEHPYVCSAVLHMYCQCAHMDEAVKYSKKHGEKCRAMGSC--VICRVLGHCASTKEVVLG 202

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
            Q+H Q +    + ++  G+AL+ MY +C     AN VF  +P  + VSW A++ A  Q+
Sbjct: 203 SQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQN 262

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFE-TMH-GPYGIPPGE 555
                A++L+  M  EG+ P+  T+   L++C     +K G      TM  G +G+ P  
Sbjct: 263 ELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPVC 322

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF- 614
           +     +++  ++G   +A+ V  S+P +     W +++ G   HG     ++A   +  
Sbjct: 323 N---ALMNMYSKSGSVEDARRVFLSMPCRDVVS-WNSIIIGYAHHGRAREAMEAFHDMLF 378

Query: 615 -QLMPHHAGTYVLLSNMYANLGRWDDA-ARVRKLMRDRGVKKEPG 657
            + +P +  T++ + +  A LG  D+    +  +M++ GVK  PG
Sbjct: 379 AEEVPSYV-TFIGVLSACAQLGLVDEGFYYLNIMMKEVGVK--PG 420



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 91/209 (43%), Gaps = 39/209 (18%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
             L+  YS S +V+ AR +F   P   RD V +N++I  Y+H+     A+E F DM   +
Sbjct: 323 NALMNMYSKSGSVEDARRVFLSMPC--RDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAE 380

Query: 145 VKPDNFTFTSVLSALAL--IVEEEKQCMQ--MHCTVVKSGTGLFTSVLNALISV------ 194
             P   TF  VLSA A   +V+E    +   M    VK G   +T ++  L  V      
Sbjct: 381 EVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMVGLLCRVGRLDEA 440

Query: 195 --YVK--CVSSPFVSSRSLMGA-------------ARRVFDEMPERDELSWTTMMTGYVK 237
             +++  C+ +  V+ RSL+ +             A ++F   P +D  ++  +   Y K
Sbjct: 441 ERFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQLKP-KDVGTYVLLSNMYAK 499

Query: 238 NDYLDAA-------REFLDGMSENVGVAW 259
            +  D         RE   G+ +  GV+W
Sbjct: 500 ANRWDGVVKVRRLMREL--GVRKEPGVSW 526


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/566 (39%), Positives = 332/566 (58%), Gaps = 20/566 (3%)

Query: 241 LDAAREFLDGMSENVGVAWNALISGYVHR---ELKMLMLRIQL------DEFTYTSVISA 291
           LD + +  D +  + G  WN ++  Y+     E  +L+ ++ +      D +TY  V+ A
Sbjct: 79  LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 138

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           CA   L   GK++H ++L    K   +  + V N L+ +Y  CG + +AR +F++ P  D
Sbjct: 139 CAVRLLEFGGKEIHDHVL----KVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLD 194

Query: 352 LVSWNAILSAYVSAG---LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQ 408
            VSWN+IL+ YV  G    + EA  LF  M E++++SW+ +ISG  QNG  EE L +F +
Sbjct: 195 SVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIE 254

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA---- 464
           M   G +  +      +++CA L  ++ G+ +H  ++  G +S ++  NALI MY+    
Sbjct: 255 MNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYM 314

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           +CG VE A  VFN M      SWNA+I  L  +G   R+++++ +M   G++P+ ITF+ 
Sbjct: 315 KCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMG 374

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584
           VL AC H GLV EGR +F +M   +GI P   HY   +DLL RAG  +EA+ +I+S+P  
Sbjct: 375 VLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMA 434

Query: 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVR 644
           P    W ALL  C+ HG+ ++G +   +L +L P H G +VLLSN++A+ G W+D   VR
Sbjct: 435 PDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVR 494

Query: 645 KLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTK 704
            +M+ +GV K PGCS IE +  VH FL  D  HP    V   L ++   ++  GY PDT 
Sbjct: 495 GMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTN 554

Query: 705 FVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVV 764
            V  D++ ++KE  L  HSEKLA+AFGL+ +     +R++KNLRIC DCH A K +SK  
Sbjct: 555 EVSLDIDEEEKETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAY 614

Query: 765 GREIVVRDGKRFHHFRDGKCSCGDYW 790
            REIVVRD  RFH+F++G CSC DYW
Sbjct: 615 AREIVVRDRHRFHYFKEGACSCMDYW 640



 Score =  162 bits (410), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 116/430 (26%), Positives = 206/430 (47%), Gaps = 65/430 (15%)

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
            +N M+ AY  +++   A+ L++ M +++V PDN+T+  V+ A A+ + E     ++H  
Sbjct: 96  MWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGG-KEIHDH 154

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
           V+K G      V N LI++Y  C +         M  AR++FDE P  D +SW +++ GY
Sbjct: 155 VLKVGFDSDVYVQNTLINMYAVCGN---------MRDARKLFDESPVLDSVSWNSILAGY 205

Query: 236 VKNDYLDAARE---FLDGMSENVGVAWNALISGY----VHRELKMLMLR-----IQLDEF 283
           VK   +    E     + M E   V+W+ALISGY    ++ E  ++ +      ++LDE 
Sbjct: 206 VKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEV 265

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALV----TLYWKCGKVNE 339
              SV+SACA+  + + GK +H  ++R       E  + + NAL+     +Y KCG V  
Sbjct: 266 VVVSVLSACAHLSIVKTGKMIHGLVIRMGI----ESYVNLQNALIHMYSDMYMKCGCVEN 321

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
           A ++FN M E+ + SWNA++      GL+                               
Sbjct: 322 ALEVFNGMEEKGVSSWNALIIGLAVNGLV------------------------------- 350

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNA 458
           E  L +FS+M+  G  P +  F G + +C  +G ++ GR   A ++   G + ++     
Sbjct: 351 ERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGC 410

Query: 459 LITMYARCGVVEAANCVFNTMPNV-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
           ++ +  R G++  A  +  +MP   D  +W A++ A  +HG+      +  ++++  + P
Sbjct: 411 MVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIE--LQP 468

Query: 518 DRITFLTVLS 527
           D   F  +LS
Sbjct: 469 DHDGFHVLLS 478



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 152/341 (44%), Gaps = 55/341 (16%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +H H++  GF    ++ N LI++Y     +  AR LFDE P  D V+  +++A Y  
Sbjct: 148 GKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVK 207

Query: 94  SDN---VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
             +   V  A ++FN+  +  +D V ++A+I+ Y  N     A+ +F +M  + ++ D  
Sbjct: 208 KGDMGQVMEAWKLFNE--MDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEV 265

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
              SVLSA A            H ++VK+G  +   V+   I  YV           +L 
Sbjct: 266 VVVSVLSACA------------HLSIVKTGKMIHGLVIRMGIESYV-----------NLQ 302

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI-----SG 265
            A   ++ +M              Y+K   ++ A E  +GM E    +WNALI     +G
Sbjct: 303 NALIHMYSDM--------------YMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNG 348

Query: 266 YVHRELKMLMLR----IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
            V R L M        +  +E T+  V+ AC + GL   G+   A ++    K   E ++
Sbjct: 349 LVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIE---KHGIEPNV 405

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
                +V L  + G +NEA  +   MP   D+ +W A+L A
Sbjct: 406 KHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGA 446


>gi|297740028|emb|CBI30210.3| unnamed protein product [Vitis vinifera]
          Length = 900

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 268/774 (34%), Positives = 403/774 (52%), Gaps = 96/774 (12%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L   +HA +I  GF     + N L+ +Y K   L     LFDE+P  DI +  T+I++  
Sbjct: 207 LGCQLHAIVIKMGFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISS-- 264

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR-DDVKPDNFT 151
                 + +EM  +                          A ELFRDMRR D  + D+FT
Sbjct: 265 ------VVKEMMYER-------------------------AFELFRDMRRIDGFRIDHFT 293

Query: 152 FTSVLSA---LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
            +++L A   LA +V  E     +H  V+K G     SV+NALI  Y KC S   V +  
Sbjct: 294 LSTILVAARGLASMVGRE-----IHAHVIKIGFESNISVINALIRFYTKCGSIKHVVA-- 346

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
                  +F++M  RD ++WT M+T Y++    D A E  D M     +++NA++SG+  
Sbjct: 347 -------LFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNAILSGFCQ 399

Query: 269 RE---------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                       +M+   ++L +FT T V++AC      ++ KQ+H ++L+         
Sbjct: 400 NGEGSKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQIHGFILKFGFGSNA-- 457

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
              +  AL+ +  +CG++ +A+ +F+Q                              +  
Sbjct: 458 --CIEAALLDMCTRCGRMADAQKMFSQG-----------------------------SFS 486

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS-CAGLGALENGR 438
           +   + WT MI G A+N   EE + LF Q +LEG    D   + A+   C  L   E G+
Sbjct: 487 QSGSIIWTSMICGYARNAQPEEAISLFCQSQLEGAMVVDKVASTAVLGVCGTLAFHEMGK 546

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           Q+H   + SG+ S L  GN++ITMY++C  ++ A  VFN MP  D VSWN +IA    H 
Sbjct: 547 QIHCHALKSGFLSDLGVGNSIITMYSKCSNMDDAIKVFNVMPAHDIVSWNGLIAGHLLHR 606

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNH--AGLVKEGRRYFETMHGPYGIPPGED 556
            G  A+ ++ +M K GI PD +TF+ ++SA  H  + LV   RR F +M   Y I P  +
Sbjct: 607 QGDEALSVWSKMEKAGIKPDTVTFVLIISAYRHTNSNLVDNCRRLFLSMKTIYHIDPTVE 666

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           HY   + +L   G   EA+++I+ +P +P A +W ALL  CRIH N  +G +AA+ L  +
Sbjct: 667 HYTSLVGVLGYWGLLEEAEEMINKMPIEPEASVWRALLDACRIHSNTTIGKRAAKHLLAM 726

Query: 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTA 676
            P    TY+L+SN+Y+  GRW  +  VR+ MR +G +K PG SWI  +NKVH F   D +
Sbjct: 727 KPLDPSTYILVSNLYSAYGRWHCSDMVREEMRVKGFRKHPGRSWIIHENKVHSFYARDKS 786

Query: 677 HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLP 736
           HP+A+ ++  LE L++E  K GYVPDT FVLH++E  QK+  L  HS K+A  +GL+   
Sbjct: 787 HPQAKDIHSGLELLIMECLKAGYVPDTSFVLHEVEEHQKKDFLFYHSAKIAATYGLLMTR 846

Query: 737 GGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            G  +R++KN+ +CGDCH   K++S V GREI +RD    H F +G+CSC DYW
Sbjct: 847 PGRPIRIVKNILLCGDCHTFLKYVSIVTGREIFLRDASGHHCFLNGQCSCKDYW 900



 Score =  192 bits (488), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 148/560 (26%), Positives = 260/560 (46%), Gaps = 52/560 (9%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           DI     LI AY     V  A ++F    L   + V Y AMI+ ++ ++    A+E+F  
Sbjct: 122 DIHLANALIVAYLKLGMVPNAYKVF--VGLSCPNVVSYTAMISGFAKSNRERQAMEIFFR 179

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           MR   ++ + F+F ++L+    +++ E  C Q+H  V+K G   +T V NAL+ +Y KC 
Sbjct: 180 MRSSGIELNEFSFVAILTVCIRLLDLELGC-QLHAIVIKMGFLNYTFVSNALMGLYGKC- 237

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                     + +  ++FDEMP RD  SW T+++  VK    + A E    M        
Sbjct: 238 --------GYLDSVLQLFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMRR------ 283

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
              I G+            ++D FT ++++ A A      +G+++HA++++       E 
Sbjct: 284 ---IDGF------------RIDHFTLSTILVA-ARGLASMVGREIHAHVIKIGF----ES 323

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
           ++ V NAL+  Y KCG +     +F +M  RD+++W  +++AY+  GL D A  +F+ M 
Sbjct: 324 NISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMP 383

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
            RN +S+  ++SG  QNG G + L  F +M  EG +  D+   G + +C  L   +  +Q
Sbjct: 384 ARNSISYNAILSGFCQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQ 443

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN--CVFNTMPNVDSVSWNAMIAALGQH 497
           +H  ++  G+ S+     AL+ M  RCG +  A       +     S+ W +MI    ++
Sbjct: 444 IHGFILKFGFGSNACIEAALLDMCTRCGRMADAQKMFSQGSFSQSGSIIWTSMICGYARN 503

Query: 498 GNGARAIELYEQMLKEG-ILPDRITFLTVLSACNHAGLVKEGRR-YFETMHGPYGIPPGE 555
                AI L+ Q   EG ++ D++    VL  C      + G++ +   +   +    G 
Sbjct: 504 AQPEEAISLFCQSQLEGAMVVDKVASTAVLGVCGTLAFHEMGKQIHCHALKSGFLSDLGV 563

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI--WEALLAGCRIH--GNIDLGIQAAE 611
            +      ++    K S   D I      P+  I  W  L+AG  +H  G+  L + +  
Sbjct: 564 GN-----SIITMYSKCSNMDDAIKVFNVMPAHDIVSWNGLIAGHLLHRQGDEALSVWSKM 618

Query: 612 QLFQLMPHHAGTYVLLSNMY 631
           +   + P    T+VL+ + Y
Sbjct: 619 EKAGIKPDTV-TFVLIISAY 637



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 124/484 (25%), Positives = 219/484 (45%), Gaps = 77/484 (15%)

Query: 29  ITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLI 88
           + S + R +HAH+I  GF+    +IN LI  Y K   + +   LF+++   D++  T +I
Sbjct: 304 LASMVGREIHAHVIKIGFESNISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMI 363

Query: 89  AAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPD 148
            AY       LA E+F+K P   R+++ YNA+++ +  N  G  A+  F  M  + V+  
Sbjct: 364 TAYMEFGLTDLALEVFDKMP--ARNSISYNAILSGFCQNGEGSKALAFFCRMVEEGVELT 421

Query: 149 NFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
           +FT T VL+A  L++ E K   Q+H  ++K G G    +  AL+ +  +C          
Sbjct: 422 DFTLTGVLNACGLLM-EAKISKQIHGFILKFGFGSNACIEAALLDMCTRC---------G 471

Query: 209 LMGAARRV--FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
            M  A+++       +   + WT+M+ GY +N   + A                  IS +
Sbjct: 472 RMADAQKMFSQGSFSQSGSIIWTSMICGYARNAQPEEA------------------ISLF 513

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
              +L+  M+   +D+   T+V+  C       +GKQ+H + L++         L V N+
Sbjct: 514 CQSQLEGAMV---VDKVASTAVLGVCGTLAFHEMGKQIHCHALKSGFLS----DLGVGNS 566

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           ++T+Y KC  +++A  +FN MP  D+VSWN                              
Sbjct: 567 IITMYSKCSNMDDAIKVFNVMPAHDIVSWNG----------------------------- 597

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA--LENGRQLHAQL 444
             +I+G   +  G+E L ++S+M   G KP    F   I++     +  ++N R+L   +
Sbjct: 598 --LIAGHLLHRQGDEALSVWSKMEKAGIKPDTVTFVLIISAYRHTNSNLVDNCRRLFLSM 655

Query: 445 VHSGY-DSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN--- 499
               + D ++    +L+ +    G++E A  + N MP   ++  W A++ A   H N   
Sbjct: 656 KTIYHIDPTVEHYTSLVGVLGYWGLLEEAEEMINKMPIEPEASVWRALLDACRIHSNTTI 715

Query: 500 GARA 503
           G RA
Sbjct: 716 GKRA 719


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/614 (37%), Positives = 338/614 (55%), Gaps = 47/614 (7%)

Query: 184 FTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDA 243
           F S      + Y  C+ + +  +   +  AR +FD +P  D +S+ T+++ +  +   D 
Sbjct: 89  FASTPRKTTATY-NCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADG 147

Query: 244 AREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ 303
           AR     M     V+WN ++SG                           + SG     K 
Sbjct: 148 ARRLFASMPVRDVVSWNTMVSGL--------------------------SKSGAVEEAKA 181

Query: 304 VHAYLLRTEAKPTPEFSLPVNN-----ALVTLYWKCGKVNEARDIFNQMPER-DLVSWNA 357
           V               ++PV N     A+V+ +     ++ A + F   PE+ D V W A
Sbjct: 182 VF-------------LAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTA 228

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RLEGFKP 416
           ++S Y+  G + +A   FEAM  RNL+SW  +++G  +N + ++ L+LF  M R    +P
Sbjct: 229 MVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQP 288

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
                +  +  C+ L AL  G+Q+H   +      +L+ G +L++MY +CG + +A  +F
Sbjct: 289 NASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLF 348

Query: 477 NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536
             M   D V+WNAMI+   QHG+G  AI L+E+M  EG+ P+ ITF+ VL+AC H GL  
Sbjct: 349 GEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCD 408

Query: 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
            G R FE M   YGI P  DHY+  +DLLCRAGK   A D+I S+PF+P    +  LLA 
Sbjct: 409 FGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAA 468

Query: 597 CRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEP 656
           CR++ N++    AA +L +  P  AG YV L+N+YA   +WDD +RVR+ M+D  V K P
Sbjct: 469 CRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTP 528

Query: 657 GCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKE 716
           G SWIE+   +H F  +D  HP+   +++ L QL   M+ +GYVPD  FVLHD++   K 
Sbjct: 529 GYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKV 588

Query: 717 YALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRF 776
             L  HSEKLA++FGL+    G T+R+ KNLR+CGDCHNA K +SK+  REI++RD  RF
Sbjct: 589 QMLMRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTRF 648

Query: 777 HHFRDGKCSCGDYW 790
           HHFR G CSCGDYW
Sbjct: 649 HHFRGGHCSCGDYW 662



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 176/380 (46%), Gaps = 72/380 (18%)

Query: 54  NRLIDIYCKSL-KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMR 112
           N L+  Y ++L +L  AR LFD IP PD V+  TL++ + AS +   AR +F   P+  R
Sbjct: 101 NCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPV--R 158

Query: 113 DTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQM 172
           D V +N M++  S +     A  +F                     LA+ V         
Sbjct: 159 DVVSWNTMVSGLSKSGAVEEAKAVF---------------------LAMPVRN------- 190

Query: 173 HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER-DELSWTTM 231
                               SV    + S F  SR  M AA   F   PE+ D + WT M
Sbjct: 191 --------------------SVSWNAMVSGFACSRD-MSAAEEWFRNAPEKGDAVLWTAM 229

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV---HRELKMLMLR-------IQLD 281
           ++GY+    +  A E+ + M     V+WNA+++GYV   H +  + + R       +Q +
Sbjct: 230 VSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPN 289

Query: 282 EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEAR 341
             T +SV+  C+N      GKQ+H + ++         +L V  +LV++Y KCG ++ A 
Sbjct: 290 ASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSR----NLTVGTSLVSMYCKCGDLSSAC 345

Query: 342 DIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR----ERNLLSWTVMISGLAQNG 397
            +F +M  RD+V+WNA++S Y   G   EA +LFE M+    E N +++  +++     G
Sbjct: 346 KLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTG 405

Query: 398 YGEEGLKLFSQMR-LEGFKP 416
             + G++ F  M+ L G +P
Sbjct: 406 LCDFGIRCFEGMQELYGIEP 425


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 252/728 (34%), Positives = 390/728 (53%), Gaps = 97/728 (13%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D++    LI  Y     V LA  +F++  +  R+ V + A++  Y    N   ++ L  +
Sbjct: 38  DLIMNNDLIDMYGKCSRVDLACSVFDR--MLERNVVSWTALMCGYLQEGNAKGSLALLCE 95

Query: 140 MRRDDVKPDNFTFTSVLSAL-ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
           M    VKP+ FTF++ L A  AL V E    MQ+H   VKSG    + V NA I +Y KC
Sbjct: 96  MGYSGVKPNEFTFSTSLKACGALGVVENG--MQIHGMCVKSGFEWVSVVGNATIDMYSKC 153

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
                      +G A +VF++MP R+                                V+
Sbjct: 154 ---------GRIGMAEQVFNKMPFRNL-------------------------------VS 173

Query: 259 WNALISGYVH----RELKMLMLRIQ-----LDEFTYTSVISACANSGLFRLGKQVHAYLL 309
           WNA+I+G+ H    R+  +L  R+Q      DEFT+TS + AC   G  R G Q+HA L+
Sbjct: 174 WNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLI 233

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLID 369
                 T  F + + N + +                           AI+  Y   G + 
Sbjct: 234 ------TRGFPISIRNIIAS---------------------------AIVDLYAKCGYLF 260

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
           EA+ +F+ + ++NL+SW+ +I G AQ G   E + LF Q+R        +  +  +   A
Sbjct: 261 EAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFA 320

Query: 430 GLGALENGRQLHAQL--VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
            L  +E G+Q+H  +  V SG D  +S  N++I MY +CG+ E A  +F+ M   + VSW
Sbjct: 321 DLALVEQGKQMHCYILKVPSGLD--ISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSW 378

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
             MI   G+HG G +AI L+ +M  +GI  D + +L +LSAC+H+GL++E + YF  +  
Sbjct: 379 TVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCN 438

Query: 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
            + + P  +HYA  +D+L RAG+  EAK++I+++  KP+  IW+ LL+ CR+HGN+++G 
Sbjct: 439 NHQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVHGNLEIGR 498

Query: 608 QAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKV 667
           +  E LF++   +   YV++SN+YA  G W +  RVRKL++ +G+KKE G SW+E++ ++
Sbjct: 499 EVGEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLVKAKGLKKEAGQSWVEINKEI 558

Query: 668 HVFLVDDTAHPEAQAVYKYLEQLVLEMR-KLGYVPDTKFVLHDMESDQKEYALSTHSEKL 726
           H F   D  HP  + +++ L+++   ++ ++GY    +F LHD+E + KE  L  HSEKL
Sbjct: 559 HFFYGGDDTHPLTEKIHEMLKEMERRVKEEVGYAYGLRFALHDVEEESKEENLRVHSEKL 618

Query: 727 AVAFGL----MKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDG 782
           A+   L    M+  GG  +RV KNLR+CGDCH   K +SK++ +  VVRD  RFH F DG
Sbjct: 619 AIGLALVCDGMEKKGG-VIRVFKNLRVCGDCHEFIKGLSKILKKVFVVRDANRFHRFEDG 677

Query: 783 KCSCGDYW 790
            CSCGDYW
Sbjct: 678 LCSCGDYW 685



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 156/318 (49%), Gaps = 39/318 (12%)

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           ++  C+ +GLF  G QVHA            F L +NN L+ +Y KC +V+ A  +F++M
Sbjct: 10  LLRNCSKNGLFDQGLQVHA----AAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRM 65

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
            ER++VSW A++  Y+                               Q G  +  L L  
Sbjct: 66  LERNVVSWTALMCGYL-------------------------------QEGNAKGSLALLC 94

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467
           +M   G KP ++ F+ ++ +C  LG +ENG Q+H   V SG++     GNA I MY++CG
Sbjct: 95  EMGYSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCG 154

Query: 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
            +  A  VFN MP  + VSWNAMIA     GNG +++ L+++M  +G +PD  TF + L 
Sbjct: 155 RIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLK 214

Query: 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHY--ARFIDLLCRAGKFSEAKDVIDSLPFKP 585
           AC   G ++ G +   ++    G P    +   +  +DL  + G   EA+ V D +  K 
Sbjct: 215 ACGALGAIRGGTQIHASLI-TRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKN 273

Query: 586 SAPIWEALLAGCRIHGNI 603
               W AL+ G    GN+
Sbjct: 274 LIS-WSALIQGFAQEGNL 290



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 192/439 (43%), Gaps = 76/439 (17%)

Query: 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS 227
           Q +Q+H   V  G G    + N LI +Y KC       S         VFD M ER+ +S
Sbjct: 22  QGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACS---------VFDRMLERNVVS 72

Query: 228 WTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTS 287
           WT +M GY++      +   L  M             GY           ++ +EFT+++
Sbjct: 73  WTALMCGYLQEGNAKGSLALLCEM-------------GYSG---------VKPNEFTFST 110

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
            + AC   G+   G Q+H   +    K   E+   V NA + +Y KCG++  A  +FN+M
Sbjct: 111 SLKACGALGVVENGMQIHGMCV----KSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKM 166

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
           P R+LVSWNA                               MI+G    G G + L LF 
Sbjct: 167 PFRNLVSWNA-------------------------------MIAGHTHEGNGRKSLVLFQ 195

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS--AGNALITMYAR 465
           +M+ +G  P ++ F   + +C  LGA+  G Q+HA L+  G+  S+     +A++ +YA+
Sbjct: 196 RMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAK 255

Query: 466 CGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTV 525
           CG +  A  VF+ +   + +SW+A+I    Q GN   A++L+ Q+ +     D      +
Sbjct: 256 CGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIM 315

Query: 526 LSACNHAGLVKEGRRYFETMHG-PYGIPPGEDHYA--RFIDLLCRAGKFSEAKDVIDSLP 582
           +       LV++G++    MH     +P G D       ID+  + G   EA+ +   + 
Sbjct: 316 MGVFADLALVEQGKQ----MHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQ 371

Query: 583 FKPSAPIWEALLAGCRIHG 601
            +     W  ++ G   HG
Sbjct: 372 VRNVVS-WTVMITGYGKHG 389



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 183/413 (44%), Gaps = 88/413 (21%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGF--KPREHIINRLIDIYCKSLKLVYARTLF 73
           + S L+ C     I       +HA +I+ GF    R  I + ++D+Y K   L  A+ +F
Sbjct: 209 FTSTLKACGALGAIRG--GTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVF 266

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
           D I Q ++++ + LI  ++   N+                                   A
Sbjct: 267 DRIEQKNLISWSALIQGFAQEGNLL---------------------------------EA 293

Query: 134 IELFRDMRRDDVKPDNFTFT---SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNA 190
           ++LFR +R      D F  +    V + LAL+    +Q  QMHC ++K  +GL  SV N+
Sbjct: 294 MDLFRQLRESVSNVDGFVLSIMMGVFADLALV----EQGKQMHCYILKVPSGLDISVANS 349

Query: 191 LISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDG 250
           +I +Y+KC          L   A R+F EM  R+ +SWT M+TGY K+           G
Sbjct: 350 IIDMYLKC---------GLTEEAERLFSEMQVRNVVSWTVMITGYGKH-----------G 389

Query: 251 MSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
           + E             +H   +M +  I+LDE  Y +++SAC++SGL R  ++  + L  
Sbjct: 390 LGEKA-----------IHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCN 438

Query: 311 T-EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM---PERDLVSWNAILSAYVSAG 366
             + KP  E        +V +  + G++ EA+++   M   P   +  W  +LSA    G
Sbjct: 439 NHQMKPNIEHYA----CMVDILGRAGQLKEAKNLIENMKLKPNEGI--WQTLLSACRVHG 492

Query: 367 LIDEAKSLFEA---MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
            ++  + + E    M   N +++ +M +  A+ GY +E  ++   ++ +G K 
Sbjct: 493 NLEIGREVGEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLVKAKGLKK 545



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 10/186 (5%)

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
            A  + +C+  G  + G Q+HA  V+ G+   L   N LI MY +C  V+ A  VF+ M 
Sbjct: 7   LAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRML 66

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
             + VSW A++    Q GN   ++ L  +M   G+ P+  TF T L AC   G+V+ G +
Sbjct: 67  ERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQ 126

Query: 541 YFETMHGPYGIPPGEDHYARF----IDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
               +HG   +  G +  +      ID+  + G+   A+ V + +PF+     W A++AG
Sbjct: 127 ----IHGMC-VKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVS-WNAMIAG 180

Query: 597 CRIHGN 602
               GN
Sbjct: 181 HTHEGN 186


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 255/714 (35%), Positives = 379/714 (53%), Gaps = 80/714 (11%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE-- 135
           Q D+   T L+  Y     +  A  +F   P   RD V +NAM+  Y+H+   H A+   
Sbjct: 42  QADLFVSTALLDMYVKCACLPDAAHIFATMP--ARDLVAWNAMLAGYAHHGMYHHAVAHL 99

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVK--------SGTGLFTSV 187
           L   M+   ++P+  T  ++L  LA       Q   +H   ++        S + L   V
Sbjct: 100 LSMQMQMHRLRPNASTLVALLPLLAQ-QGALAQGTSVHAYCIRACLHPNRNSKSKLTDGV 158

Query: 188 L--NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245
           L   AL+ +Y KC S  +         ARRVFD MP R+E++W+ ++ G+V    +  A 
Sbjct: 159 LLGTALLDMYAKCGSLLY---------ARRVFDAMPARNEVTWSALIGGFVLCSRMTQAF 209

Query: 246 EFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
                M    G+ +                    L   +  S + ACA+    R+G+Q+H
Sbjct: 210 LLFKAMLAQ-GLCF--------------------LSPTSIASALRACASLDHLRMGEQLH 248

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365
           A L ++                                       DL + N++LS Y  A
Sbjct: 249 ALLAKSGVHA-----------------------------------DLTAGNSLLSMYAKA 273

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425
           GLID+A +LF+ M  ++ +S++ ++SG  QNG  EE   +F +M+    +P        I
Sbjct: 274 GLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLI 333

Query: 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV 485
            +C+ L AL++GR  H  ++  G  S  S  NALI MYA+CG ++ +  VFN MP+ D V
Sbjct: 334 PACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIV 393

Query: 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETM 545
           SWN MIA  G HG G  A  L+ +M   G  PD +TF+ +LSAC+H+GLV EG+ +F  M
Sbjct: 394 SWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVM 453

Query: 546 HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDL 605
              YG+ P  +HY   +DLL R G   EA + I S+P +    +W ALL  CR++ NIDL
Sbjct: 454 GHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDL 513

Query: 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDN 665
           G + +  + +L P   G +VLLSN+Y+  GR+D+AA VR + + +G KK PGCSWIE++ 
Sbjct: 514 GKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEING 573

Query: 666 KVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEK 725
            +H F+  D +HP++  +Y+ L+ +++ ++KLGY PDT FVL D+E ++KE AL  HSEK
Sbjct: 574 SLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEK 633

Query: 726 LAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHF 779
           LA+A+G++ L    T+ V KNLR+CGDCH   K +S V  R I+VRD  RFHHF
Sbjct: 634 LAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHF 687



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 88/197 (44%), Gaps = 22/197 (11%)

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P +Y F  A+ +C+ L     GR +H   +H+G  + L    AL+ MY +C  +  A  +
Sbjct: 8   PNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHI 67

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIE--LYEQMLKEGILPDRITFLTVLSACNHAG 533
           F TMP  D V+WNAM+A    HG    A+   L  QM    + P+  T + +L      G
Sbjct: 68  FATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQG 127

Query: 534 LVKEGRRYFETMHGPYGI----PPGEDHYAR----------FIDLLCRAGKFSEAKDVID 579
            + +G     ++H  Y I     P  +  ++           +D+  + G    A+ V D
Sbjct: 128 ALAQG----TSVHA-YCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFD 182

Query: 580 SLPFKPSAPIWEALLAG 596
           ++P +     W AL+ G
Sbjct: 183 AMPARNEV-TWSALIGG 198



 Score = 45.8 bits (107), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 15/111 (13%)

Query: 28  PITSSLA-----RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIV 82
           P  S LA     R  H  +I  G      I N LID+Y K  ++  +R +F+ +P  DIV
Sbjct: 334 PACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIV 393

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMR------DTVFYNAMITAYSHN 127
           +  T+IA Y      K A  +F    L+M       D V +  +++A SH+
Sbjct: 394 SWNTMIAGYGIHGLGKEATALF----LEMNNLGFPPDGVTFICLLSACSHS 440


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  441 bits (1133), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/610 (38%), Positives = 350/610 (57%), Gaps = 68/610 (11%)

Query: 181 TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY 240
           T L TS  N LI++Y KC S  F         AR+VFDEMP R  +SW TM+    +N  
Sbjct: 97  TDLLTS--NILINMYSKCGSVDF---------ARQVFDEMPSRSLVSWNTMIGSLTQNGE 145

Query: 241 LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRL 300
            + A + L                      L+M        EFT +SV+ ACA       
Sbjct: 146 ENEALDLL----------------------LQMQREGTPFSEFTISSVLCACAAKCALSE 183

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
            + +HA+ +    K   + ++ V  AL+ +Y KCG                         
Sbjct: 184 CQLLHAFAI----KAAMDLNVFVATALLDVYAKCG------------------------- 214

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
                 L+ +A  +FE+M +R++++W+ M +G  QN   E+ L LF +    G K   + 
Sbjct: 215 ------LMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFL 268

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
            +  I +CAGL A+  G+Q++A L  SG+ S++   ++LI MYA+CG +E +  VF  + 
Sbjct: 269 MSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVE 328

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
             + V WNAMI+ L +H      + L+E+M + G+ P+ +TF++VLSAC H GLV++G++
Sbjct: 329 KRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQK 388

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
           YF+ M   + + P   HY+  +D L RAG+  EA D+I  LPF  SA +W +LLA CR H
Sbjct: 389 YFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTH 448

Query: 601 GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSW 660
           GN++L   AA++LF + PH++G Y+LLSNMYA  G+WD+ A++RKL+++  VKKE G SW
Sbjct: 449 GNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSW 508

Query: 661 IEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALS 720
           IE+ +KVH+F+V +  HP+   +Y  L +++ E++KLGY  +T+  LH +    K+  L 
Sbjct: 509 IEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLR 568

Query: 721 THSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFR 780
            HSEKLA   GL+ LP  A +R++KNLRICGDCH+  K  SK   R+++VRD  RFHHF+
Sbjct: 569 HHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFK 628

Query: 781 DGKCSCGDYW 790
           +G CSCGD+W
Sbjct: 629 NGCCSCGDFW 638



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 110/424 (25%), Positives = 191/424 (45%), Gaps = 71/424 (16%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + D++    LI  YS   +V  AR++F++ P   R  V +N MI + + N   + A++L 
Sbjct: 96  KTDLLTSNILINMYSKCGSVDFARQVFDEMP--SRSLVSWNTMIGSLTQNGEENEALDLL 153

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
             M+R+      FT +SVL A A       +C  +H   +K+   L   V  AL+ VY K
Sbjct: 154 LQMQREGTPFSEFTISSVLCACAAKCALS-ECQLLHAFAIKAAMDLNVFVATALLDVYAK 212

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C          LM  A  VF+ MP+R  ++W++M  GYV+N+  + A             
Sbjct: 213 C---------GLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRK------- 256

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
           AW    +G  H            D+F  +SVI ACA       GKQ++A L    +K   
Sbjct: 257 AWE---TGLKH------------DQFLMSSVICACAGLAAMIEGKQMNALL----SKSGF 297

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
             ++ V ++L+ +Y KCG + E+  +F  + +R++V WNA                    
Sbjct: 298 CSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNA-------------------- 337

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
                      MISGL+++    E + LF +M+  G  P D  F   +++C  +G +  G
Sbjct: 338 -----------MISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKG 386

Query: 438 RQLHAQLVHSGYDS-SLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALG 495
           ++    +    + + ++   + ++   +R G +  A  + + +P N  +  W +++A+  
Sbjct: 387 QKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCR 446

Query: 496 QHGN 499
            HGN
Sbjct: 447 THGN 450



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 10/173 (5%)

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
           CA    L  G+  HAQ++  G  + L   N LI MY++CG V+ A  VF+ MP+   VSW
Sbjct: 74  CAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSW 133

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
           N MI +L Q+G    A++L  QM +EG      T  +VL AC     + E     + +H 
Sbjct: 134 NTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSEC----QLLHA 189

Query: 548 PYGIPPGEDH----YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
            + I    D         +D+  + G   +A  V +S+P + S   W ++ AG
Sbjct: 190 -FAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDR-SVVTWSSMAAG 240


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  441 bits (1133), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 263/763 (34%), Positives = 392/763 (51%), Gaps = 114/763 (14%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           AR++H   +++G+     + + L  +Y K  +   AR +FD +P PD             
Sbjct: 133 ARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPD------------- 179

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF-RDMRRDDVKPDNFTF 152
                               T+ +N ++        G  A+E F R +    V+PD+ T 
Sbjct: 180 --------------------TILWNTLLAGLP----GSEALEAFVRMVDAGRVRPDSTTL 215

Query: 153 TSVLSALALIVEEEKQCMQM----HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
            S L A A     E   M M    H   VK G      V+  L+S+Y KC          
Sbjct: 216 ASSLRAAA-----EASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGD-------- 262

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
            M +A+ +FD M   D +++  +++GY  N  ++++ E    ++ +    W         
Sbjct: 263 -MDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTAS---GWRP------- 311

Query: 269 RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALV 328
                       +  T  +VI   +  G   L + +HA++++       +    V+ AL 
Sbjct: 312 ------------NSSTLVAVIPVYSPFGHELLARCLHAFVVKARL----DADALVSTALT 355

Query: 329 TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV 388
           TLY +           N M                     + A+S+F+AM E+ + SW  
Sbjct: 356 TLYCR----------LNDM---------------------ESARSIFDAMLEKTMESWNA 384

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG 448
           MISG AQNG  E  + LF  M+    +P     +  +++CA LGAL  G+ +H  +    
Sbjct: 385 MISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEK 444

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
            + ++    ALI MYA+CG +  A  +F+ M N + VSWNAMI+  G HG GA A++LY+
Sbjct: 445 LELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYK 504

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568
            ML   ILP   TFL+V+ AC+H GLV EG++ F  M   Y I PG +H    +DLL RA
Sbjct: 505 DMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRA 564

Query: 569 GKFSEAKDVIDSLPFKPSAP-IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627
           GK +EA ++I   P     P +W ALL  C +H N DL   A+++LF+L   +AG YVLL
Sbjct: 565 GKLNEALELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLL 624

Query: 628 SNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYL 687
           SN+Y +   + +AA VR+  + R + K PGC+ IE+ ++ HVF+  D  HP+++A+Y YL
Sbjct: 625 SNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVFMAGDHLHPQSEAIYSYL 684

Query: 688 EQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNL 747
           E+L  +M + GY P T+  L+D+E ++KE+ +  HSEKLA+AFGL+    G  +R++KNL
Sbjct: 685 ERLTAKMIEAGYQPVTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNL 744

Query: 748 RICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           R+C DCHNA KF+SKV  R IVVRD  RFHHFRDG CSCGDYW
Sbjct: 745 RVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 112/415 (26%), Positives = 185/415 (44%), Gaps = 77/415 (18%)

Query: 3   MKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCK 62
           M +A  +R  +   AS L+     + +  ++ R VH + +  G    EH++  L+ +Y K
Sbjct: 202 MVDAGRVRPDSTTLASSLRAAAEASHM--AMGRCVHGYGVKCGLAEHEHVVTGLMSLYSK 259

Query: 63  SLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
              +  A+ LFD +  PD+VA   LI+ YS                         N M+ 
Sbjct: 260 CGDMDSAQFLFDRMDNPDLVAYNALISGYSV------------------------NGMV- 294

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEE-EKQCMQMHCTVVKSGT 181
                    +++ELF+++     +P++ T  +V+   +    E   +C  +H  VVK+  
Sbjct: 295 --------ESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARC--LHAFVVKARL 344

Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
                V  AL ++Y +            M +AR +FD M E+   SW  M++GY +N   
Sbjct: 345 DADALVSTALTTLYCRLND---------MESARSIFDAMLEKTMESWNAMISGYAQNGLT 395

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
           + A      M E                      L +Q +  T +S +SACA+ G   LG
Sbjct: 396 EMAVALFQLMQE----------------------LNVQPNPITISSTLSACAHLGALSLG 433

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
           K VH    R  +K   E ++ V  AL+ +Y KCG + EAR IF++M  +++VSWNA++S 
Sbjct: 434 KWVH----RIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISG 489

Query: 362 YVSAGLIDEAKSLFEAMRERNLL----SWTVMISGLAQNGYGEEGLKLFSQMRLE 412
           Y   G   EA  L++ M +  +L    ++  +I   +  G  +EG K+F  M  E
Sbjct: 490 YGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNE 544



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 118/471 (25%), Positives = 198/471 (42%), Gaps = 81/471 (17%)

Query: 147 PDNFTF----TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSP 202
           PD+F+F    TS+ S+ +    +      +H   V +G    T V +AL  +Y K     
Sbjct: 107 PDSFSFAFAATSLSSSCSSRGNDAAAARTLHGLSVAAGYAADTFVASALAKLYFKL---- 162

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL 262
                S    AR+VFD +P  D + W T++ G   ++ L+A    +D             
Sbjct: 163 -----SRGDDARKVFDTVPSPDTILWNTLLAGLPGSEALEAFVRMVDAG----------- 206

Query: 263 ISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
                         R++ D  T  S + A A +    +G+ VH Y ++            
Sbjct: 207 --------------RVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEH---- 248

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
           V   L++LY KCG ++ A+ +F++M   DLV++NA++S Y                    
Sbjct: 249 VVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGY-------------------- 288

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
                      + NG  E  ++LF ++   G++P        I   +  G     R LHA
Sbjct: 289 -----------SVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHA 337

Query: 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
            +V +  D+      AL T+Y R   +E+A  +F+ M      SWNAMI+   Q+G    
Sbjct: 338 FVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEM 397

Query: 503 AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562
           A+ L++ M +  + P+ IT  + LSAC H G +  G ++   +     +          I
Sbjct: 398 AVALFQLMQELNVQPNPITISSTLSACAHLGALSLG-KWVHRIISKEKLELNVYVMTALI 456

Query: 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
           D+  + G  +EA+ + D +  K +   W A+++G  +HG      Q AE L
Sbjct: 457 DMYAKCGSIAEARSIFDRMDNK-NVVSWNAMISGYGLHG------QGAEAL 500


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  441 bits (1133), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/593 (39%), Positives = 334/593 (56%), Gaps = 67/593 (11%)

Query: 203  FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK-NDYLDAAREFLDGMSENVGVAWNA 261
            F S    +  A  +FD M  RD +SW+ M+ G+ K  DY++    F              
Sbjct: 779  FYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTF-------------- 824

Query: 262  LISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
                   REL  +    + D +T   VI AC +    ++G+ +H  + +        F L
Sbjct: 825  -------REL--IRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYK--------FGL 867

Query: 322  PVNN----ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
             +++    ALV +Y KC ++ +AR                                LF+ 
Sbjct: 868  DLDHFVCAALVDMYGKCREIEDAR-------------------------------FLFDK 896

Query: 378  MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
            M ER+L++WTVMI G A+ G   E L LF +MR EG  P   A    + +CA LGA+   
Sbjct: 897  MXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKA 956

Query: 438  RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
            R +   +    +   +  G A+I M+A+CG VE+A  +F+ M   + +SW+AMIAA G H
Sbjct: 957  RTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYH 1016

Query: 498  GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
            G G +A++L+  ML+ GILP++IT +++L AC+HAGLV+EG R+F  M   Y +     H
Sbjct: 1017 GQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKH 1076

Query: 558  YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
            Y   +DLL RAG+  EA  +I S+  +    +W A L  CR H ++ L  +AA  L +L 
Sbjct: 1077 YTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTHKDVXLAEKAATSLLELQ 1136

Query: 618  PHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAH 677
            P + G Y+LLSN+YAN GRW+D A++R LM  R +KK PG +WIEVDNK H F V DT H
Sbjct: 1137 PQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTH 1196

Query: 678  PEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPG 737
            P ++ +Y+ L+ L  ++  +GYVPDT FVLHD++ + K   L THSEKLA+AFGL+  P 
Sbjct: 1197 PRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPE 1256

Query: 738  GATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
               +R++KNLR+CGDCH   K +S + GR I+VRD  RFHHF++G CSCGDYW
Sbjct: 1257 HTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 1309



 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/551 (37%), Positives = 302/551 (54%), Gaps = 67/551 (12%)

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK-NDYLDAAREFLDGMSENVGVAWNA 261
           F S    +  A  +FD M  RD +SW+ M+ G+ K  DY++    F              
Sbjct: 103 FYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTF-------------- 148

Query: 262 LISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
                  REL  +    + D +T   VI AC +    ++G+ +H  + +        F L
Sbjct: 149 -------REL--IRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYK--------FGL 191

Query: 322 PVNN----ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
            +++    ALV +Y KC +                               I++A+ LF+ 
Sbjct: 192 DLDHFVCAALVDMYVKCRE-------------------------------IEDARFLFDK 220

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
           M+ER+L++WTVMI G A+ G   E L LF +MR EG  P   A    + +CA LGA+   
Sbjct: 221 MQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKA 280

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           R +   +    +   +  G A+I MYA+CG VE+A  +F+ M   + +SW+AMIAA G H
Sbjct: 281 RIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYH 340

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
           G G +A++L+  ML  G+LPD+IT  ++L AC+HAGLV+EG R+F +M   Y +     H
Sbjct: 341 GQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKH 400

Query: 558 YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           Y   +DLL RAG+  EA  +I S+  +    +W A L  CR H ++ L  +AA  L +L 
Sbjct: 401 YTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQ 460

Query: 618 PHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAH 677
             + G YVLLSN+YAN GRW+D A++R LM  R +KK PG +WIEVDNK H F V DT H
Sbjct: 461 SQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSVGDTTH 520

Query: 678 PEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPG 737
           P ++ +Y+ L+ L  ++  +GYVPDT FVLHD++ + K   L THSEKLA+AFGL+  P 
Sbjct: 521 PRSKEIYEMLKSLSNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPE 580

Query: 738 GATVRVLKNLR 748
              +R++KNLR
Sbjct: 581 HTPIRIIKNLR 591



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 123/256 (48%), Gaps = 8/256 (3%)

Query: 350  RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
            ++L+  N ++  Y     +D+A  LF+ M  R+ +SW+VM+ G A+ G        F ++
Sbjct: 768  QNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFREL 827

Query: 410  RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
               G +P +Y     I +C  L  L+ GR +H  +   G D       AL+ MY +C  +
Sbjct: 828  IRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREI 887

Query: 470  EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
            E A  +F+ M   D V+W  MI    + GN   ++ L+++M +EG++PD++  +TV+ AC
Sbjct: 888  EDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFAC 947

Query: 530  NHAGLVKEGRR---YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
               G + + R    Y +       +  G       ID+  + G    A+++ D +  K +
Sbjct: 948  AKLGAMHKARTIDDYIQRKKFQLDVILG----TAMIDMHAKCGCVESAREIFDRMEEK-N 1002

Query: 587  APIWEALLAGCRIHGN 602
               W A++A    HG 
Sbjct: 1003 VISWSAMIAAYGYHGQ 1018



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 155/338 (45%), Gaps = 50/338 (14%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           +IV    LI  YS    +  A  +F+   + +RD+V ++ M+  ++   +       FR+
Sbjct: 93  NIVVANKLIYFYSYYRALDDAYGLFDG--MCVRDSVSWSVMVGGFAKVGDYINCFGTFRE 150

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQM----HCTVVKSGTGLFTSVLNALISVY 195
           + R   +PDN+T   V+ A       + + +QM    H  V K G  L   V  AL+ +Y
Sbjct: 151 LIRCGARPDNYTLPFVIRAC-----RDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMY 205

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
           VKC           +  AR +FD+M ERD ++WT M+ GY +    + +    + M E  
Sbjct: 206 VKCRE---------IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEG 256

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
            V                       D+    +V+ ACA  G     + +  Y+ R +   
Sbjct: 257 VVP----------------------DKVAMVTVVFACAKLGAMHKARIIDDYIQRKKF-- 292

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
             +  + +  A++ +Y KCG V  AR+IF++M E++++SW+A+++AY   G   +A  LF
Sbjct: 293 --QLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLF 350

Query: 376 EAMRERNLLSWTVMISGL----AQNGYGEEGLKLFSQM 409
             M    +L   + ++ L    +  G  EEGL+ FS M
Sbjct: 351 PMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSM 388



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 127/276 (46%), Gaps = 12/276 (4%)

Query: 334 CGKVNEARDIFNQMPE----RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           C  + + R +  Q        ++V  N ++  Y     +D+A  LF+ M  R+ +SW+VM
Sbjct: 72  CRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVM 131

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           + G A+ G        F ++   G +P +Y     I +C  L  L+ GR +H  +   G 
Sbjct: 132 VGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGL 191

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
           D       AL+ MY +C  +E A  +F+ M   D V+W  MI    + G    ++ L+E+
Sbjct: 192 DLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEK 251

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGR---RYFETMHGPYGIPPGEDHYARFIDLLC 566
           M +EG++PD++  +TV+ AC   G + + R    Y +       +  G       ID+  
Sbjct: 252 MREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILG----TAMIDMYA 307

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
           + G    A+++ D +  K +   W A++A    HG 
Sbjct: 308 KCGCVESAREIFDRMEEK-NVISWSAMIAAYGYHGQ 342



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 153/338 (45%), Gaps = 50/338 (14%)

Query: 80   DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
            +++    L+  YS    +  A  +F+   + +RD+V ++ M+  ++   +       FR+
Sbjct: 769  NLIVANKLVXFYSYYRALDDAYGLFDG--MCVRDSVSWSVMVGGFAKVGDYMNCFGTFRE 826

Query: 140  MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQM----HCTVVKSGTGLFTSVLNALISVY 195
            + R   +PDN+T   V+ A       + + +QM    H  V K G  L   V  AL+ +Y
Sbjct: 827  LIRCGARPDNYTLPFVIRAC-----RDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMY 881

Query: 196  VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
             KC           +  AR +FD+M ERD ++WT M+ GY +    + +    D M E  
Sbjct: 882  GKCRE---------IEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEG 932

Query: 256  GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
             V                       D+    +V+ ACA  G     + +  Y+ R +   
Sbjct: 933  VVP----------------------DKVAMVTVVFACAKLGAMHKARTIDDYIQRKKF-- 968

Query: 316  TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
              +  + +  A++ ++ KCG V  AR+IF++M E++++SW+A+++AY   G   +A  LF
Sbjct: 969  --QLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLF 1026

Query: 376  EAMRERNLLSWTVMISGL----AQNGYGEEGLKLFSQM 409
              M    +L   + +  L    +  G  EEGL+ FS M
Sbjct: 1027 PMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXM 1064



 Score = 55.8 bits (133), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 6/171 (3%)

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
           L   RQ+H Q    G   +L   N L+  Y+    ++ A  +F+ M   DSVSW+ M+  
Sbjct: 751 LTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 810

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
             + G+       + ++++ G  PD  T   V+ AC     ++ GR      H  Y    
Sbjct: 811 FAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRL---IHHIVYKFGL 867

Query: 554 GEDHY--ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
             DH+  A  +D+  +  +  +A+ + D +  +     W  ++ G    GN
Sbjct: 868 DLDHFVCAALVDMYGKCREIEDARFLFDKMX-ERDLVTWTVMIGGYAECGN 917



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 8/103 (7%)

Query: 69   ARTLFDEIP----QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
            ART+ D I     Q D++  T +I  ++    V+ ARE+F++  ++ ++ + ++AMI AY
Sbjct: 956  ARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDR--MEEKNVISWSAMIAAY 1013

Query: 125  SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL--ALIVEE 165
             ++  G  A++LF  M R  + P+  T  S+L A   A +VEE
Sbjct: 1014 GYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEE 1056



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 35/185 (18%)

Query: 55  RLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDT 114
           R+ID Y +  K            Q D++  T +I  Y+    V+ ARE+F++  ++ ++ 
Sbjct: 281 RIIDDYIQRKKF-----------QLDVILGTAMIDMYAKCGCVESAREIFDR--MEEKNV 327

Query: 115 VFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHC 174
           + ++AMI AY ++  G  A++LF  M    + PD  T  S+L A +            H 
Sbjct: 328 ISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACS------------HA 375

Query: 175 TVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMP-------ERDELS 227
            +V+ G   F+S+        V+     +     L+G A R+ + +        E+DE  
Sbjct: 376 GLVEEGLRFFSSMWE---DYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGL 432

Query: 228 WTTMM 232
           W   +
Sbjct: 433 WGAFL 437


>gi|413920851|gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
          Length = 770

 Score =  441 bits (1133), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 257/759 (33%), Positives = 395/759 (52%), Gaps = 92/759 (12%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           AR++H HM+ +G      +   L++ Y +      AR+LFD++P+ ++V  T LI     
Sbjct: 97  ARALHGHMVKTGTSADMFVATSLVNAYMRCGASQDARSLFDQMPEKNVVTWTALI----- 151

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                                       T Y+ NS    A+E+F +M      P ++T  
Sbjct: 152 ----------------------------TGYTVNSQLLEALEVFVEMLEAGRYPSHYTLG 183

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           ++L+A +     +    Q+H   +K      TS+ N+L  +Y K  S         + +A
Sbjct: 184 AMLNACSASNNADLGS-QVHGYTIKYRALSITSIGNSLCRMYAKSGS---------LESA 233

Query: 214 RRVFDEMPERDELSWTTMMTGYVKND-YLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
            R F  +P+++ ++WTTM++   +++ Y +                            L 
Sbjct: 234 MRAFRMVPDKNVITWTTMISACAEDENYTELGLTLF----------------------LD 271

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           MLM  +  +EFT TSV+S C       LGKQV A+  +   +     ++PV N+ + LY 
Sbjct: 272 MLMDGVLPNEFTLTSVMSLCGTRLDLNLGKQVQAFCFKIGCQT----NIPVKNSTMYLYL 327

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           + G+ +EA   F +M +  +++WNA++S Y  A +++ AK    A R R           
Sbjct: 328 RKGETDEAMRFFEEMDDVSIITWNAMISGY--AQIMETAKDDLHA-RSR----------- 373

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
                 G + LK+F  ++    KP  + F+  ++ C+ + ALE G Q+HAQ + +G+ S 
Sbjct: 374 ------GFQALKVFRNLKRSAMKPDLFTFSSILSVCSSMMALEQGEQIHAQTIKTGFLSD 427

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           +   +AL+ MY +CG +E A   F  M     V+W +MI+   QHG    AI+L+E M  
Sbjct: 428 VVVNSALVNMYNKCGCIEDATKAFVEMSIRTLVTWTSMISGYSQHGRPQEAIQLFEDMRF 487

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
            G+ P+ ITF+ VLSAC++AGL ++   YF+ M   Y I P  DHY   +D+  R G+  
Sbjct: 488 AGVRPNEITFVCVLSACSYAGLAEKAEHYFDMMKEEYKIEPIVDHYGCMVDMFVRLGRLD 547

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632
           +A   I    F+P+  IW +L+AGCR HGN++L   AA++L +L P    TYVLL NMY 
Sbjct: 548 DAFAFIRRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLIELRPKGIETYVLLLNMYI 607

Query: 633 NLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVL 692
           +  RW D ARVRKLM+  G+      SWI + +KV+ F  +D  H  +  +Y+ LE L+ 
Sbjct: 608 SNERWHDVARVRKLMKQEGLGVLMDRSWITIKDKVYFFKANDKTHELSDELYQLLENLLE 667

Query: 693 EMRKLGYVPDTKFVLHDMESDQKEYALST--HSEKLAVAFGLMKLPGGATVRVLKNLRIC 750
           + + +GY P     L D E D+K  A S   HSE+LAVA GL++ P GATVRV KN+ +C
Sbjct: 668 KAKTIGYEPYQSAELSDSEDDKKPPAGSVRHHSERLAVALGLLQTPPGATVRVTKNITMC 727

Query: 751 GDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
            DCH++ KF S +  REIVVRD KR H F+DG+CSCGD+
Sbjct: 728 RDCHSSIKFFSLLANREIVVRDSKRLHKFKDGRCSCGDF 766



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 105/202 (51%), Gaps = 5/202 (2%)

Query: 333 KCGKVNEARDIFNQMPER----DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV 388
           + G +  AR +   M +     D+    ++++AY+  G   +A+SLF+ M E+N+++WT 
Sbjct: 90  ETGSLGGARALHGHMVKTGTSADMFVATSLVNAYMRCGASQDARSLFDQMPEKNVVTWTA 149

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG 448
           +I+G   N    E L++F +M   G  P  Y     + +C+     + G Q+H   +   
Sbjct: 150 LITGYTVNSQLLEALEVFVEMLEAGRYPSHYTLGAMLNACSASNNADLGSQVHGYTIKYR 209

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR-AIELY 507
             S  S GN+L  MYA+ G +E+A   F  +P+ + ++W  MI+A  +  N     + L+
Sbjct: 210 ALSITSIGNSLCRMYAKSGSLESAMRAFRMVPDKNVITWTTMISACAEDENYTELGLTLF 269

Query: 508 EQMLKEGILPDRITFLTVLSAC 529
             ML +G+LP+  T  +V+S C
Sbjct: 270 LDMLMDGVLPNEFTLTSVMSLC 291



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 88/407 (21%), Positives = 180/407 (44%), Gaps = 64/407 (15%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTL----FDEIPQPDIVARTT 86
           + L  ++   M+  G  P E  +  ++ +    L L   + +    F    Q +I  + +
Sbjct: 262 TELGLTLFLDMLMDGVLPNEFTLTSVMSLCGTRLDLNLGKQVQAFCFKIGCQTNIPVKNS 321

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDT--VFYNAMITAYSH-----------NSNGHAA 133
            +  Y        A   F +    M D   + +NAMI+ Y+             S G  A
Sbjct: 322 TMYLYLRKGETDEAMRFFEE----MDDVSIITWNAMISGYAQIMETAKDDLHARSRGFQA 377

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
           +++FR+++R  +KPD FTF+S+LS  + ++  E Q  Q+H   +K+G      V +AL++
Sbjct: 378 LKVFRNLKRSAMKPDLFTFSSILSVCSSMMALE-QGEQIHAQTIKTGFLSDVVVNSALVN 436

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
           +Y KC           +  A + F EM  R  ++WT+M++GY ++     A +  + M  
Sbjct: 437 MYNKC---------GCIEDATKAFVEMSIRTLVTWTSMISGYSQHGRPQEAIQLFEDMR- 486

Query: 254 NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY-LLRTE 312
                     +G            ++ +E T+  V+SAC+ +GL    K  H + +++ E
Sbjct: 487 ---------FAG------------VRPNEITFVCVLSACSYAGLAE--KAEHYFDMMKEE 523

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLID-- 369
            K  P   +     +V ++ + G++++A     +   E +   W+++++   S G ++  
Sbjct: 524 YKIEP--IVDHYGCMVDMFVRLGRLDDAFAFIRRTGFEPNEAIWSSLVAGCRSHGNMELA 581

Query: 370 --EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF 414
              A  L E +R + + ++ ++++    N    +  ++   M+ EG 
Sbjct: 582 FYAADRLIE-LRPKGIETYVLLLNMYISNERWHDVARVRKLMKQEGL 627



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 10/174 (5%)

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
           C   G+L   R LH  +V +G  + +    +L+  Y RCG  + A  +F+ MP  + V+W
Sbjct: 88  CVETGSLGGARALHGHMVKTGTSADMFVATSLVNAYMRCGASQDARSLFDQMPEKNVVTW 147

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
            A+I     +     A+E++ +ML+ G  P   T   +L+AC+ +     G +    +HG
Sbjct: 148 TALITGYTVNSQLLEALEVFVEMLEAGRYPSHYTLGAMLNACSASNNADLGSQ----VHG 203

Query: 548 PYGIPPGEDHYARFIDLLCR----AGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
            Y I           + LCR    +G    A      +P K +   W  +++ C
Sbjct: 204 -YTIKYRALSITSIGNSLCRMYAKSGSLESAMRAFRMVPDK-NVITWTTMISAC 255


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 269/797 (33%), Positives = 412/797 (51%), Gaps = 109/797 (13%)

Query: 65  KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
           + ++ R L  EI   D V   +L+  YS    V+ AR +F++    +RD V + AM +  
Sbjct: 60  RALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQM-CGVRDLVSWTAMASCL 118

Query: 125 SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ--MHCTVVKSGT- 181
           + N     ++ L  +M    ++P+ FT  +  +A A   +E  +     +   V+K+G  
Sbjct: 119 ARNGAERESLRLLGEMLELGLRPNAFTLCA--AARACFPQELFRLAGGVVLGFVLKTGFW 176

Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
           G   SV  ALI ++ +            + AA+RVFD + ER  + WT ++T YV+    
Sbjct: 177 GTDVSVGCALIDMFAR---------NGDLVAAQRVFDGLIERTSVVWTLLITRYVQ---- 223

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
                         G A     S  V   L ML    + D ++ +S+ISAC   G  RLG
Sbjct: 224 -------------AGCA-----SKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLG 265

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG---KVNEARDIFNQMPERDLVSWNAI 358
           +Q+H+  LR            V+  LV +Y K      +  AR +F  MP  +++SW A+
Sbjct: 266 QQLHSVALRLGLVSDS----CVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTAL 321

Query: 359 LSAYVSAGLID-EAKSLFEAMRER----------NLLS---------------------- 385
           +S YV +G+ +    +LF  M             NLL                       
Sbjct: 322 ISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTS 381

Query: 386 -------WTVMISGLAQNGYGEEGLKLFSQM-----------------------RLEGFK 415
                     ++S  A++G  EE  K F Q+                       ++EG  
Sbjct: 382 IAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETERNNASCSSKIEGMD 441

Query: 416 P--CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473
                + FA  +++ A +G L  G++LHA  + +G+ S     N+L++MYARCG +E A 
Sbjct: 442 DGVSTFTFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDAC 501

Query: 474 CVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533
             F+ M + + +SW ++I+ L +HG   +A+ ++  M+  G+ P+ +T++ VLSAC+H G
Sbjct: 502 RAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSACSHVG 561

Query: 534 LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEAL 593
           LVKEG+ +F +M   +G+ P  +HYA  +DLL R+G   EA+  I+ +P K  A +W+ L
Sbjct: 562 LVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPCKADALVWKTL 621

Query: 594 LAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653
           L+ CR +GN ++G  AA  +  L P     YVLLSN+YA+ G WD+ AR+R LMRD+ + 
Sbjct: 622 LSACRTYGNTEIGEIAANHVINLEPRDPAPYVLLSNLYADAGLWDEVARIRSLMRDKNLS 681

Query: 654 KEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESD 713
           KE G SW++V N +H F   DT+HP A  +Y  L  L+ E++ +GYVPDT  VLHDM  +
Sbjct: 682 KETGLSWMDVGNTIHEFRAGDTSHPLAIDIYAKLVTLIREIKDIGYVPDTSIVLHDMSEE 741

Query: 714 QKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDG 773
            KE  L  HSEK+AVAFGL+       +R+ KNLR+C DCH+A K++SK  GREI++RD 
Sbjct: 742 LKEQYLLQHSEKIAVAFGLITTSATKPMRIFKNLRVCADCHSAIKYISKSTGREIILRDS 801

Query: 774 KRFHHFRDGKCSCGDYW 790
            RFH  +DG CSCG+YW
Sbjct: 802 NRFHRMKDGICSCGEYW 818



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 162/368 (44%), Gaps = 52/368 (14%)

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           ++++ A +G  RLG+ +H  LLR+E   T                               
Sbjct: 46  LLTSAARAGDLRLGRALHRRLLRSEILDT------------------------------- 74

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAM-RERNLLSWTVMISGLAQNGYGEEGLKLF 406
              D V  N++L+ Y   G ++ A+ +F+ M   R+L+SWT M S LA+NG   E L+L 
Sbjct: 75  ---DAVVANSLLTMYSKCGAVEAARRVFDQMCGVRDLVSWTAMASCLARNGAERESLRLL 131

Query: 407 SQMRLEGFKPCDYAFAGAITSC--AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
            +M   G +P  +    A  +C    L  L  G  L   L    + + +S G ALI M+A
Sbjct: 132 GEMLELGLRPNAFTLCAAARACFPQELFRLAGGVVLGFVLKTGFWGTDVSVGCALIDMFA 191

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           R G + AA  VF+ +    SV W  +I    Q G  ++ +EL+  ML +G  PD  +  +
Sbjct: 192 RNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSS 251

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG---KFSEAKDVIDSL 581
           ++SAC   G V+ G++   ++    G+          +D+  +         A+ V  ++
Sbjct: 252 MISACTELGSVRLGQQ-LHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTM 310

Query: 582 PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM------PHHAGTYVLLSNMYANLG 635
           P + +   W AL++G    G  +  + A   LF+ M      P+H  TY  L    ANL 
Sbjct: 311 P-RHNVMSWTALISGYVQSGVQENNVMA---LFREMLNESIRPNHI-TYSNLLKACANLS 365

Query: 636 RWDDAARV 643
             D   ++
Sbjct: 366 DQDSGRQI 373



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 95/206 (46%), Gaps = 21/206 (10%)

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG-YDSSLSAGNALITMY 463
           L + + L     CD A    +TS A  G L  GR LH +L+ S   D+     N+L+TMY
Sbjct: 29  LTAHLVLSSDHSCDAA--KLLTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLTMY 86

Query: 464 ARCGVVEAANCVFNTMPNV-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF 522
           ++CG VEAA  VF+ M  V D VSW AM + L ++G    ++ L  +ML+ G+ P+  T 
Sbjct: 87  SKCGAVEAARRVFDQMCGVRDLVSWTAMASCLARNGAERESLRLLGEMLELGLRPNAFTL 146

Query: 523 LTVLSAC------NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
                AC        AG V  G   F    G +G           ID+  R G    A+ 
Sbjct: 147 CAAARACFPQELFRLAGGVVLG---FVLKTGFWGTDVSVG--CALIDMFARNGDLVAAQR 201

Query: 577 VIDSLPFKPSAPIWEALL-----AGC 597
           V D L  + S  +W  L+     AGC
Sbjct: 202 VFDGLIERTSV-VWTLLITRYVQAGC 226



 Score = 48.5 bits (114), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 88/204 (43%), Gaps = 47/204 (23%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +HA  + +GF+  + I N L+ +Y +   L  A   FDE+   ++++ T++I+    
Sbjct: 465 GQKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEMKDHNVISWTSIISG--- 521

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                LA+  + K  L M                         F DM    VKP++ T+ 
Sbjct: 522 -----LAKHGYAKQALSM-------------------------FHDMILAGVKPNDVTYI 551

Query: 154 SVLSALALI--VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           +VLSA + +  V+E K+    H   ++   GL   +       +  C+      S  L+ 
Sbjct: 552 AVLSACSHVGLVKEGKE----HFRSMQKDHGLLPRM------EHYACIVDLLARS-GLVE 600

Query: 212 AARRVFDEMP-ERDELSWTTMMTG 234
            AR+  +EMP + D L W T+++ 
Sbjct: 601 EARQFINEMPCKADALVWKTLLSA 624


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 267/751 (35%), Positives = 400/751 (53%), Gaps = 78/751 (10%)

Query: 44  SGFKPREHIINRLID--IYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAR 101
           S FKP +     LID  I+   L  +YA+ L   +     +    L+   S    V  AR
Sbjct: 70  STFKP-DKFYASLIDDSIHKTHLNQIYAKLLVTGLQYGGFLI-AKLVNKASNIGEVSCAR 127

Query: 102 EMFNKTPLKMRDTVFYNAMITAYS-HNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA 160
           ++F+K P    D   +NA++  YS H   GHA IE++  M+   V PD F+F  VL A +
Sbjct: 128 KLFDKFPDP--DVFLWNAIVRCYSRHGFFGHA-IEMYARMQVACVSPDGFSFPCVLKACS 184

Query: 161 LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEM 220
            +   E    ++H  + + G      V N L+++Y KC           +  A  VF  +
Sbjct: 185 ALPALEMG-RRVHGQIFRHGFESDVFVQNGLVALYAKC---------GEIVRANAVFGRL 234

Query: 221 PERDELSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQ 279
            +R  +SWT++++GY +N   ++A R F +    NV   W AL+S          +LR  
Sbjct: 235 VDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVS----------VLR-- 282

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
                YT V            GK +H  +++   +   EF L +  +L +LY KCG V  
Sbjct: 283 ----AYTDVED-------LEHGKSIHGCVIKMGLEC--EFDLLI--SLTSLYAKCGHVMV 327

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
           AR  FNQ+                                  +L+ W  MISG  +NGY 
Sbjct: 328 ARLFFNQV-------------------------------ENPSLIFWNAMISGYVKNGYA 356

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
           EE ++LF  M+ +  +P       +I +CA +G+LE  R +   +  S + + +    +L
Sbjct: 357 EEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSL 416

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           I  YA+CG V+ A  VF+ +P+ D V W+AM+   G HG G  +I L+  M + G+ P+ 
Sbjct: 417 IDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPND 476

Query: 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579
           +TF+ +L+AC ++GLV+EG   F  M   YGI P   HYA  +DLL RAG    A + + 
Sbjct: 477 VTFVGLLTACKNSGLVEEGWDLFHRMRD-YGIEPRHQHYACVVDLLGRAGHLDRAYNFVM 535

Query: 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639
           ++P +P   +W ALL+ C+IH ++ LG  AAE+LF L P++ G YV LSN+YA+   WD 
Sbjct: 536 NMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDC 595

Query: 640 AARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGY 699
            A+VR LMR++G+ K  G S IE++ K+  F   D  HP ++ +++ +E L   +++ G+
Sbjct: 596 VAKVRVLMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKEAGF 655

Query: 700 VPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKF 759
           VP T+ VLHD+  ++ E  L  HSE+LA+A+GL+  P G T+R+ KNLR C +CH A K 
Sbjct: 656 VPHTESVLHDLNYEETEETLCNHSERLAIAYGLISTPPGTTLRITKNLRACDNCHAAIKL 715

Query: 760 MSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +SK+V REIVVRD  RFHHF+DG CSCGDYW
Sbjct: 716 ISKLVSREIVVRDACRFHHFKDGACSCGDYW 746


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/627 (37%), Positives = 353/627 (56%), Gaps = 33/627 (5%)

Query: 165 EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERD 224
           ++++  Q+H  ++K+G    +  +   +S    C+SS   +S   +  A+ VFD     D
Sbjct: 26  KQEELKQIHARMLKTGLMQDSYAITKFLSF---CISS---TSSDFLPYAQIVFDGFDRPD 79

Query: 225 ELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFT 284
              W  M+ G+  +D  +  R  L        +    L S   H            + +T
Sbjct: 80  TFLWNLMIRGFSCSD--EPERSLL--------LYQRMLCSSAPH------------NAYT 117

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           + S++ AC+N   F    Q+HA +     K   E  +   N+L+  Y   G    A  +F
Sbjct: 118 FPSLLKACSNLSAFEETTQIHAQI----TKLGYENDVYAVNSLINSYAVTGNFKLAHLLF 173

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           +++PE D VSWN+++  YV AG +D A +LF  M E+N +SWT MISG  Q    +E L+
Sbjct: 174 DRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQ 233

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           LF +M+    +P + + A A+++CA LGALE G+ +H+ L  +        G  LI MYA
Sbjct: 234 LFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYA 293

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           +CG +E A  VF  +      +W A+I+    HG+G  AI  + +M K GI P+ ITF  
Sbjct: 294 KCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTA 353

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584
           VL+AC++ GLV+EG+  F +M   Y + P  +HY   +DLL RAG   EAK  I  +P K
Sbjct: 354 VLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLK 413

Query: 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVR 644
           P+A IW ALL  CRIH NI+LG +  E L  + P+H G YV  +N++A   +WD AA  R
Sbjct: 414 PNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETR 473

Query: 645 KLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTK 704
           +LM+++GV K PGCS I ++   H FL  D +HPE + +      +  ++ + GYVP+ +
Sbjct: 474 RLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELE 533

Query: 705 FVLHDM-ESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKV 763
            +L D+ + D++E  +  HSEKLA+ +GL+K   G  +R++KNLR+C DCH   K +SK+
Sbjct: 534 EMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKI 593

Query: 764 VGREIVVRDGKRFHHFRDGKCSCGDYW 790
             R+IV+RD  RFHHFRDGKCSCGDYW
Sbjct: 594 YKRDIVMRDRTRFHHFRDGKCSCGDYW 620



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 117/507 (23%), Positives = 212/507 (41%), Gaps = 101/507 (19%)

Query: 18  SQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLK---LVYARTLFD 74
           S LQ C  +  +     + +HA M+ +G     + I + +     S     L YA+ +FD
Sbjct: 19  SCLQRCSKQEEL-----KQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFD 73

Query: 75  EIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAI 134
              +PD                                 T  +N MI  +S +     ++
Sbjct: 74  GFDRPD---------------------------------TFLWNLMIRGFSCSDEPERSL 100

Query: 135 ELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
            L++ M       + +TF S+L A + +   E +  Q+H  + K G       +N+LI+ 
Sbjct: 101 LLYQRMLCSSAPHNAYTFPSLLKACSNLSAFE-ETTQIHAQITKLGYENDVYAVNSLINS 159

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           Y   V+  F         A  +FD +PE D++SW +++ GYVK   +D A      M+E 
Sbjct: 160 YA--VTGNF-------KLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEK 210

Query: 255 VGVAWNALISGYVHRELKMLMLR---------IQLDEFTYTSVISACANSGLFRLGKQVH 305
             ++W  +ISGYV  ++    L+         ++ D  +  + +SACA  G    GK +H
Sbjct: 211 NAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIH 270

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365
           +YL +T  +        +   L+ +Y KCG++ EA ++F  + ++ + +W A++S Y   
Sbjct: 271 SYLNKTRIR----MDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGY--- 323

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425
                                       A +G+G E +  F +M+  G KP    F   +
Sbjct: 324 ----------------------------AYHGHGREAISKFMEMQKMGIKPNVITFTAVL 355

Query: 426 TSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVD 483
           T+C+  G +E G+ +   +        ++     ++ +  R G+++ A      MP   +
Sbjct: 356 TACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPN 415

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQM 510
           +V W A++ A   H N    IEL E++
Sbjct: 416 AVIWGALLKACRIHKN----IELGEEI 438



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 132/308 (42%), Gaps = 40/308 (12%)

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVS-------AGLIDEAKSLFEAMRERNLLS 385
           +C K  E + I  +M +  L+  +  ++ ++S       +  +  A+ +F+     +   
Sbjct: 23  RCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFL 82

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
           W +MI G + +   E  L L+ +M         Y F   + +C+ L A E   Q+HAQ+ 
Sbjct: 83  WNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQIT 142

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA---------------- 489
             GY++ + A N+LI  YA  G  + A+ +F+ +P  D VSWN+                
Sbjct: 143 KLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALT 202

Query: 490 ---------------MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
                          MI+   Q      A++L+ +M    + PD ++    LSAC   G 
Sbjct: 203 LFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGA 262

Query: 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
           +++G ++  +      I          ID+  + G+  EA +V  ++  K S   W AL+
Sbjct: 263 LEQG-KWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIK-KKSVQAWTALI 320

Query: 595 AGCRIHGN 602
           +G   HG+
Sbjct: 321 SGYAYHGH 328


>gi|302764988|ref|XP_002965915.1| hypothetical protein SELMODRAFT_167728 [Selaginella moellendorffii]
 gi|300166729|gb|EFJ33335.1| hypothetical protein SELMODRAFT_167728 [Selaginella moellendorffii]
          Length = 912

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 255/792 (32%), Positives = 414/792 (52%), Gaps = 78/792 (9%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
           N +I  Y +S  L  A  +FD  P+ ++++   LI  YS +  +  A+ +F++ P   RD
Sbjct: 144 NSMITGYAQSGDLASATAMFDRTPEHNVISWNALITGYSDNRMIPEAKGVFDRAP--GRD 201

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDV-------------------------KPD 148
            + +NAM+TAY+ + +  +A E+F    + D+                          PD
Sbjct: 202 KISWNAMLTAYAQSGDLDSAKEVFDRTPQQDIVSCTLMIKACAVQEILGHAVEIFAAMPD 261

Query: 149 -NFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSR 207
            N    S +  + +   +  +   +   + +    L+TS+L+A              S  
Sbjct: 262 RNAVSYSFMIQIYIDQGKIGEAENLSRRMPQQDPTLWTSMLSAY-------------SRH 308

Query: 208 SLMGAARRVFDEMPERD-ELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS-- 264
            L+  ARR+FD    RD E+SW  +++ Y +  +L  AR   + M  +  VAW ALI+  
Sbjct: 309 GLVEEARRIFDRAARRDDEVSWNALLSAYAQAGHLHLARSTFERMPRHDVVAWTALIAVS 368

Query: 265 ---GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL------------- 308
              G +     +  L  + D   +T++I A   +G     K+V+A +             
Sbjct: 369 GQNGQLEEAEVLYDLIPERDLVAWTALIQAYGVNGKLTESKRVYALMPERNRVSHTAMII 428

Query: 309 ----------LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAI 358
                      R      P+       +++  Y + G + +AR++F+ +   D+++ NA+
Sbjct: 429 AYSQNGEVVQARKMLDTLPDPDQSTRTSMIVAYAQNGYIKDAREMFDSIKNPDVIACNAM 488

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
           + AY SA ++D AK++F++++++ L+SW  M++  AQ G  +E   +F  +  +     +
Sbjct: 489 MEAYSSAQMLDHAKAMFDSIKQKTLVSWNTMVAAYAQAGNLDEAKSIFDSIPHKNVVSHN 548

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478
                 I + A    L   R++     +S  +       A++ M A+ G +  A  +F  
Sbjct: 549 VM----IVAYAHNMDLAEARRI----FYSMDEKDTVTWTAMVAMVAQHGRLAEAQELFAK 600

Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG 538
           MP  + VSWN++IA +   G+G  A+     M  EG  PD ITF+ +L AC+H GLV+EG
Sbjct: 601 MPYRNVVSWNSLIAGMASCGHGMAAVRYLYVMRNEGAKPDHITFMGILIACSHVGLVEEG 660

Query: 539 RRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCR 598
             +F +M G +G+ P  +HY R +D+L RAG+   A+++++++PF P    W +LL  C+
Sbjct: 661 WTHFTSMQGDHGLIPWREHYCRMVDVLGRAGQLGAARELLETMPFIPDVGAWGSLLGSCK 720

Query: 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGC 658
            H ++ LG +AAE L Q     +G YVLL+NMY+++GR  DA  VR  M+ RGVKK+PG 
Sbjct: 721 THSDVKLGTRAAESLLQFDDQSSGPYVLLANMYSSVGRVADALAVRNRMKARGVKKQPGV 780

Query: 659 SWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYA 718
           S I VD  +H F+  + +HP  Q +   L +L   M+K GY PDTK VLH +  ++KE  
Sbjct: 781 SLIRVDGVLHRFVAGEASHPRHQEILSELSRLQELMKKAGYQPDTKAVLHSILDEEKEVL 840

Query: 719 LSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHH 778
           LS HSEKLA+AF  +    G  +R++KNLR+C DCH A KF+SK++ REI+VRDG RFH+
Sbjct: 841 LSYHSEKLAIAFASIACEPGTPIRIMKNLRVCSDCHTATKFLSKLLQREIIVRDGYRFHN 900

Query: 779 FRDGKCSCGDYW 790
           F +G CSCGDYW
Sbjct: 901 FENGTCSCGDYW 912



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 119/445 (26%), Positives = 200/445 (44%), Gaps = 53/445 (11%)

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
           S    M  A  +F  MP     SW +M+TGY ++  L +A    D   E+  ++WNALI+
Sbjct: 120 SQHGFMSNADEIFARMPRWSSSSWNSMITGYAQSGDLASATAMFDRTPEHNVISWNALIT 179

Query: 265 GYVHR----ELKMLMLRIQ-LDEFTYTSVISACANSGLFRLGKQVH---------AYLLR 310
           GY       E K +  R    D+ ++ ++++A A SG     K+V          +  L 
Sbjct: 180 GYSDNRMIPEAKGVFDRAPGRDKISWNAMLTAYAQSGDLDSAKEVFDRTPQQDIVSCTLM 239

Query: 311 TEAKPTPEF---------SLPVNNA-----LVTLYWKCGKVNEARDIFNQMPERDLVSWN 356
            +A    E          ++P  NA     ++ +Y   GK+ EA ++  +MP++D   W 
Sbjct: 240 IKACAVQEILGHAVEIFAAMPDRNAVSYSFMIQIYIDQGKIGEAENLSRRMPQQDPTLWT 299

Query: 357 AILSAYVSAGLIDEAKSLFE-AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           ++LSAY   GL++EA+ +F+ A R  + +SW  ++S  AQ G+       F +M      
Sbjct: 300 SMLSAYSRHGLVEEARRIFDRAARRDDEVSWNALLSAYAQAGHLHLARSTFERMPRH--- 356

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY-DSSLSAGNALITMYARCGVVEAANC 474
             D     A+ + +G    +NG+   A++++    +  L A  ALI  Y   G +  +  
Sbjct: 357 --DVVAWTALIAVSG----QNGQLEEAEVLYDLIPERDLVAWTALIQAYGVNGKLTESKR 410

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
           V+  MP  + VS  AMI A  Q+G   +A     +ML     PD+ T  +++ A    G 
Sbjct: 411 VYALMPERNRVSHTAMIIAYSQNGEVVQA----RKMLDTLPDPDQSTRTSMIVAYAQNGY 466

Query: 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
           +K+ R  F+++  P  I          ++    A     AK + DS+  K     W  ++
Sbjct: 467 IKDAREMFDSIKNPDVIACNA-----MMEAYSSAQMLDHAKAMFDSIKQKTLVS-WNTMV 520

Query: 595 AGCRIHGNIDLGIQAAEQLFQLMPH 619
           A     GN+D     A+ +F  +PH
Sbjct: 521 AAYAQAGNLD----EAKSIFDSIPH 541



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 114/427 (26%), Positives = 194/427 (45%), Gaps = 63/427 (14%)

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           N +I +Y KC         S +  A+ VF+E+PE +  S   +M  Y +N  L +A+   
Sbjct: 51  NLIIQMYGKC---------SRIDDAQAVFNELPEPNVFSRCILMQAYSENGDLGSAKAIF 101

Query: 249 DGMSENVGVAWNALISGYVHREL-----KMLMLRIQLDEFTYTSVISACANSGLFRLGKQ 303
           D +  +  V+WN+LI+G+          ++     +    ++ S+I+  A SG       
Sbjct: 102 DQIPSHNVVSWNSLIAGFSQHGFMSNADEIFARMPRWSSSSWNSMITGYAQSGDL---AS 158

Query: 304 VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV 363
             A   R     TPE ++   NAL+T Y     + EA+ +F++ P RD +SWNA+L+AY 
Sbjct: 159 ATAMFDR-----TPEHNVISWNALITGYSDNRMIPEAKGVFDRAPGRDKISWNAMLTAYA 213

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
            +G +D AK +F+   +++++S T+MI   A        +++F+ M         Y+F  
Sbjct: 214 QSGDLDSAKEVFDRTPQQDIVSCTLMIKACAVQEILGHAVEIFAAM--PDRNAVSYSFMI 271

Query: 424 AITSCAG-LGALENGRQLHAQLVHSGYDSSLSA-------------------------GN 457
            I    G +G  EN  +   Q   + + S LSA                          N
Sbjct: 272 QIYIDQGKIGEAENLSRRMPQQDPTLWTSMLSAYSRHGLVEEARRIFDRAARRDDEVSWN 331

Query: 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
           AL++ YA+ G +  A   F  MP  D V+W A+IA  GQ+G    A  LY+      ++P
Sbjct: 332 ALLSAYAQAGHLHLARSTFERMPRHDVVAWTALIAVSGQNGQLEEAEVLYD------LIP 385

Query: 518 DR--ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAK 575
           +R  + +  ++ A    G + E +R +  M     +     H A  I    + G+  +A+
Sbjct: 386 ERDLVAWTALIQAYGVNGKLTESKRVYALMPERNRV----SHTAMII-AYSQNGEVVQAR 440

Query: 576 DVIDSLP 582
            ++D+LP
Sbjct: 441 KMLDTLP 447



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 164/334 (49%), Gaps = 24/334 (7%)

Query: 273 MLMLRIQLDEF--TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
           M +L+ Q+ E      + I +C  +     G+++H  +   E +     +L + N ++ +
Sbjct: 1   MSLLKTQVRELQNALATAIRSCGIAKDLAQGRKIHNQIADGEHRG----NLFLQNLIIQM 56

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y KC ++++A+ +FN++PE ++ S   ++ AY   G +  AK++F+ +   N++SW  +I
Sbjct: 57  YGKCSRIDDAQAVFNELPEPNVFSRCILMQAYSENGDLGSAKAIFDQIPSHNVVSWNSLI 116

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
           +G +Q+G+     ++F++M     +    ++   IT  A  G L +   +  +      +
Sbjct: 117 AGFSQHGFMSNADEIFARMP----RWSSSSWNSMITGYAQSGDLASATAMFDRTP----E 168

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
            ++ + NALIT Y+   ++  A  VF+  P  D +SWNAM+ A  Q G+   A E++++ 
Sbjct: 169 HNVISWNALITGYSDNRMIPEAKGVFDRAPGRDKISWNAMLTAYAQSGDLDSAKEVFDRT 228

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
            ++ I    ++   ++ AC    ++      F  M     +      Y+  I +    GK
Sbjct: 229 PQQDI----VSCTLMIKACAVQEILGHAVEIFAAMPDRNAVS-----YSFMIQIYIDQGK 279

Query: 571 FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
             EA+++   +P +    +W ++L+    HG ++
Sbjct: 280 IGEAENLSRRMP-QQDPTLWTSMLSAYSRHGLVE 312


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 244/735 (33%), Positives = 398/735 (54%), Gaps = 48/735 (6%)

Query: 64   LKLVYARTLFDEIPQ---PDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAM 120
            +K+++A+ +  ++PQ   PD  A+  + +     D    A   +   P   R+ + +N+ 
Sbjct: 439  IKMMHAQMI--KLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLP---RNYLKWNSF 493

Query: 121  ITAYSHNSNG-HAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKS 179
            +  +  ++   H  +E+F+++    V  D+  ++  L     +++     M++H  ++K 
Sbjct: 494  VEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIW-LGMEIHGCLIKR 552

Query: 180  GTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND 239
            G  L   +  AL++ Y +C           +  A +VF EMP  + L W   +   ++++
Sbjct: 553  GFDLDVYLRCALMNFYGRCWG---------LEKANQVFHEMPNPEALLWNEAIILNLQSE 603

Query: 240  YLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFR 299
             L    E    M  +   A  A I         + +L+  + E             G   
Sbjct: 604  KLQKGVELFRKMQFSFLKAETATI---------VRVLQASISEL------------GFLN 642

Query: 300  LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAIL 359
            +GK+ H Y+LR       +  + V  +L+ +Y K   +  A+ +F+ M  R++ +WN+++
Sbjct: 643  MGKETHGYVLRNGF----DCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLV 698

Query: 360  SAYVSAGLIDEAKSLFEAMRER----NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
            S Y   G+ ++A  L   M +     +L++W  MISG A  G G+E L  F+QM+ EG  
Sbjct: 699  SGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQEGVM 758

Query: 416  PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
            P   +    + +CA L  L+ G+++H   + +G+   +    ALI MY++   ++ A+ V
Sbjct: 759  PNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKV 818

Query: 476  FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
            F  + N    SWN MI      G G  AI ++ +M K G+ PD ITF  +LSAC ++GL+
Sbjct: 819  FRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLI 878

Query: 536  KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
             EG +YF++M   Y I P  +HY   +DLL RAG   EA D+I ++P KP A IW ALL 
Sbjct: 879  GEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLG 938

Query: 596  GCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKE 655
             CRIH N+     AA+ LF+L P+++  Y+L+ N+Y+   RW+D   +R+LM   GV+  
Sbjct: 939  SCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNR 998

Query: 656  PGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQK 715
               SWI+++ +VHVF  D+  HP+A  +Y  L QLV EM+KLGYVPD   V  +M+  +K
Sbjct: 999  QVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEK 1058

Query: 716  EYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKR 775
            +  L +H+EKLA+ +GL+K+  G  +RV+KN RIC DCH+A K++S V  RE+ +RDG R
Sbjct: 1059 QKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVR 1118

Query: 776  FHHFRDGKCSCGDYW 790
            FHHFR+GKCSC D+W
Sbjct: 1119 FHHFREGKCSCNDFW 1133



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 108/486 (22%), Positives = 190/486 (39%), Gaps = 100/486 (20%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L   +H  +I  GF    ++   L++ Y +   L  A  +F E+P P             
Sbjct: 541 LGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNP------------- 587

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                               + + +N  I     +      +ELFR M+   +K +  T 
Sbjct: 588 --------------------EALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATI 627

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
             VL A    +       + H  V+++G      V  +LI +YVK  S         + +
Sbjct: 628 VRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHS---------LTS 678

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG-----VAWNALISGYV 267
           A+ VFD M  R+  +W ++++GY      + A   L+ M E  G     V WN +ISGY 
Sbjct: 679 AQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQM-EKEGIKPDLVTWNGMISGYA 737

Query: 268 H----RELKMLMLRIQLD-----EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                +E      ++Q +       + T ++ ACA+  L + GK++H   +R        
Sbjct: 738 MWGCGKEALAFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIE--- 794

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
             + V  AL+ +Y K   +  A  +F ++  + L SWN ++  +   GL  EA S+F  M
Sbjct: 795 -DVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEM 853

Query: 379 RERNL----LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
           ++  +    +++T ++S    +G   EG K F  M               IT    +  L
Sbjct: 854 QKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSM---------------ITDYRIVPRL 898

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAA 493
           E+                      ++ +  R G ++ A  + +TMP   D+  W A++ +
Sbjct: 899 EH-------------------YCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGS 939

Query: 494 LGQHGN 499
              H N
Sbjct: 940 CRIHKN 945



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 156/335 (46%), Gaps = 42/335 (12%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           ++ +  H +++ +GF    ++   LID+Y K+  L  A+ +FD +   +I A  +L++ Y
Sbjct: 642 NMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGY 701

Query: 92  SAS----DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147
           S      D ++L  +M  K  +K  D V +N MI+ Y+    G  A+  F  M+++ V P
Sbjct: 702 SFKGMFEDALRLLNQM-EKEGIK-PDLVTWNGMISGYAMWGCGKEALAFFAQMQQEGVMP 759

Query: 148 DNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSR 207
           ++ + T +L A A +   +K   ++HC  +++G      V  ALI +Y K  S       
Sbjct: 760 NSASITCLLRACASLSLLQKG-KEIHCLSIRNGFIEDVFVATALIDMYSKSSS------- 811

Query: 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV 267
             +  A +VF  +  +   SW  M+ G+        A    + M + VGV  +A+     
Sbjct: 812 --LKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEM-QKVGVGPDAI----- 863

Query: 268 HRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327
                           T+T+++SAC NSGL   G +    ++ T+ +  P   L     +
Sbjct: 864 ----------------TFTALLSACKNSGLIGEGWKYFDSMI-TDYRIVPR--LEHYCCM 904

Query: 328 VTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
           V L  + G ++EA D+ + MP + D   W A+L +
Sbjct: 905 VDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGS 939


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/614 (37%), Positives = 338/614 (55%), Gaps = 47/614 (7%)

Query: 184 FTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDA 243
           F S      + Y  C+ + +  +   +  AR +FD +P  D +S+ T+++ +  +   D 
Sbjct: 40  FASTPRKTTATY-NCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADG 98

Query: 244 AREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ 303
           AR     M     V+WN ++SG                           + SG     K 
Sbjct: 99  ARRLFASMPVRDVVSWNTMVSGL--------------------------SKSGAVEEAKA 132

Query: 304 VHAYLLRTEAKPTPEFSLPVNN-----ALVTLYWKCGKVNEARDIFNQMPER-DLVSWNA 357
           V               ++PV N     A+V+ +     ++ A + F   PE+ D V W A
Sbjct: 133 VF-------------LAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTA 179

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RLEGFKP 416
           ++S Y+  G + +A   FEAM  RNL+SW  +++G  +N + ++ L+LF  M R    +P
Sbjct: 180 MVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQP 239

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
                +  +  C+ L AL  G+Q+H   +      +L+ G +L++MY +CG + +A  +F
Sbjct: 240 NASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLF 299

Query: 477 NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536
             M   D V+WNAMI+   QHG+G  AI L+E+M  EG+ P+ ITF+ VL+AC H GL  
Sbjct: 300 GEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCD 359

Query: 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
            G R FE M   YGI P  DHY+  +DLLCRAGK   A D+I S+PF+P    +  LLA 
Sbjct: 360 FGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAA 419

Query: 597 CRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEP 656
           CR++ N++    AA +L +  P  AG YV L+N+YA   +WDD +RVR+ M+D  V K P
Sbjct: 420 CRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTP 479

Query: 657 GCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKE 716
           G SWIE+   +H F  +D  HP+   +++ L QL   M+ +GYVPD  FVLHD++   K 
Sbjct: 480 GYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKV 539

Query: 717 YALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRF 776
             L  HSEKLA++FGL+    G T+R+ KNLR+CGDCHNA K +SK+  REI++RD  RF
Sbjct: 540 QMLMRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTRF 599

Query: 777 HHFRDGKCSCGDYW 790
           HHFR G CSCGDYW
Sbjct: 600 HHFRGGHCSCGDYW 613



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 177/380 (46%), Gaps = 72/380 (18%)

Query: 54  NRLIDIYCKSL-KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMR 112
           N L+  Y ++L +L  AR LFD IP PD V+  TL++ + AS +   AR +F   P+  R
Sbjct: 52  NCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPV--R 109

Query: 113 DTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQM 172
           D V +N M++  S +     A  +F                     LA+ V         
Sbjct: 110 DVVSWNTMVSGLSKSGAVEEAKAVF---------------------LAMPVRN------- 141

Query: 173 HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER-DELSWTTM 231
                               SV    + S F  SR  M AA   F   PE+ D + WT M
Sbjct: 142 --------------------SVSWNAMVSGFACSRD-MSAAEEWFRNAPEKGDAVLWTAM 180

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV---HRELKMLMLR-------IQLD 281
           ++GY+    +  A E+ + M     V+WNA+++GYV   H +  + + R       +Q +
Sbjct: 181 VSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPN 240

Query: 282 EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEAR 341
             T +SV+  C+N      GKQ+H + ++    P    +L V  +LV++Y KCG ++ A 
Sbjct: 241 ASTLSSVLLGCSNLSALGFGKQIHQWCMKL---PLSR-NLTVGTSLVSMYCKCGDLSSAC 296

Query: 342 DIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR----ERNLLSWTVMISGLAQNG 397
            +F +M  RD+V+WNA++S Y   G   EA +LFE M+    E N +++  +++     G
Sbjct: 297 KLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTG 356

Query: 398 YGEEGLKLFSQMR-LEGFKP 416
             + G++ F  M+ L G +P
Sbjct: 357 LCDFGIRCFEGMQELYGIEP 376


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 247/720 (34%), Positives = 382/720 (53%), Gaps = 96/720 (13%)

Query: 85   TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
             TL+  YS +   + A  +F    +  RD + +N+M+  Y  +      +++  ++ +  
Sbjct: 1087 NTLLTLYSEAGRSEDAELVFQ--AMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMG 1144

Query: 145  VKPDNFTFTSVLSALALIVEEEKQCMQ----MHCTVVKSGTGLFTSVLNALISVYVKCVS 200
               ++ TF S L+A +       +C+     +H  ++ +G   F  V NAL+++Y K   
Sbjct: 1145 KVMNHVTFASALAACS-----NPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKL-- 1197

Query: 201  SPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWN 260
                    +M  A++V   MP+ D                                V WN
Sbjct: 1198 -------GMMMEAKKVLQTMPQPDR-------------------------------VTWN 1219

Query: 261  ALISGYVHRE--------LKMLMLR-IQLDEFTYTSVISAC-ANSGLFRLGKQVHAYLLR 310
            ALI G+   E         K++  + I  +  T  SV+ AC A   L + G  +HA+++ 
Sbjct: 1220 ALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVL 1279

Query: 311  TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
            T  +        V N+L+T+Y KCG +N                     S Y+       
Sbjct: 1280 TGFESDDY----VKNSLITMYAKCGDLNS--------------------SNYI------- 1308

Query: 371  AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
                F+ +  ++ ++W  M++  A +G GEE LK+F +MR  G     ++F+G + + A 
Sbjct: 1309 ----FDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATAN 1364

Query: 431  LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
            L  LE G+QLH  ++  G++S L   NA + MY +CG +     +     N   +SWN +
Sbjct: 1365 LAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNIL 1424

Query: 491  IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
            I+A  +HG   +A E + +MLK G  PD +TF+++LSACNH GLV EG  Y+++M   +G
Sbjct: 1425 ISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFG 1484

Query: 551  IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
            + PG +H    IDLL R+G+ S A+  I  +P  P+   W +LLA CRIHGN++L  + A
Sbjct: 1485 VFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTA 1544

Query: 611  EQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVF 670
            E L +L P     YVL SN+ A  G+W+D   +RK M    +KK+P CSW+++ +KVH F
Sbjct: 1545 EHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSF 1604

Query: 671  LVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAF 730
             + +  HP+A  +   L +L+   ++ GYVPDT F LHDM+ +QKEY L  HSE+LA+AF
Sbjct: 1605 GMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAF 1664

Query: 731  GLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            GL+  P  +T+R+ KNLR+CGDCH+ +KF+S +VGR+IV+RD  RFHHF  GKCSCGDYW
Sbjct: 1665 GLINTPESSTLRIFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1724



 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 190/659 (28%), Positives = 286/659 (43%), Gaps = 117/659 (17%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y   LQLC  +          +H H+I++GF    H+  +LI  Y K             
Sbjct: 33  YLKILQLCIDKK--AKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKV------------ 78

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
               D++A                AR +F+  P   R  V + AM++ YS N     A  
Sbjct: 79  ---GDVIA----------------ARNVFDGMP--ERSVVSWTAMVSGYSQNGRFEKAFV 117

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKS-GTGLFTSVLNALISV 194
           LF DMR   VK + FT+ S L A   +     +C+ M   V      G F        ++
Sbjct: 118 LFSDMRHCGVKANQFTYGSALRACTSL-----RCLDMGIQVQGCIQKGRFVE------NL 166

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           +VK     F S    M  A  +F  M ERD +SW  M+ GY                   
Sbjct: 167 FVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYA------------------ 208

Query: 255 VGVAWNALISGYVHRELKML--MLRIQL--DEFTYTSVISACANSGLFRLGKQVHAYLLR 310
                   + G+      M   MLR  L  D +T  SV+ A A  G   +  Q+H     
Sbjct: 209 --------VQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHG---- 256

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP--ERDLVSWNAILSAYVSAGLI 368
                                           I  Q+     D+V+   +++AY   G +
Sbjct: 257 --------------------------------IITQLGYGSYDIVT-GLLINAYAKNGSL 283

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNG-YGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
             AK L + M +++L S T +I+G A  G Y  + L LF +M        D      +  
Sbjct: 284 RSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNI 343

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
           CA L +   G Q+HA  +       ++ GNALI MYA+ G +E A   F+ M   + +SW
Sbjct: 344 CANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISW 403

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
            ++I+   +HG G  A+ LY++M  +G  P+ +TFL++L AC+H GL  EG   F  M  
Sbjct: 404 TSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVN 463

Query: 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
            Y I P  +HY+  +DL  R G   EA +++  +  K +A +W A+L    I+G + LG 
Sbjct: 464 KYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGK 523

Query: 608 QAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNK 666
           +AA  LF + P ++  YV+L+++Y+  G WDDA ++RKLM +R  KK  G S+ +   K
Sbjct: 524 EAASNLFNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKNAGYSFFQATKK 582



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 157/598 (26%), Positives = 257/598 (42%), Gaps = 125/598 (20%)

Query: 33   LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
            L   V  H+I  GF+    + N LI ++     +  A  +FD + + DI++         
Sbjct: 965  LGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIIS--------- 1015

Query: 93   ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                    +NAMI+AY+H+     ++  F  MR       N T 
Sbjct: 1016 ------------------------WNAMISAYAHHGLCRESLRCFHWMRHLH-NETNSTT 1050

Query: 153  TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
             S L ++   V+  K    +H  VVK G      + N L+++Y +   S           
Sbjct: 1051 LSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSE---------D 1101

Query: 213  ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
            A  VF  M ERD +SW +MM  YV++       + LDG+               +  EL 
Sbjct: 1102 AELVFQAMTERDLISWNSMMACYVQDG------KCLDGLK--------------ILAEL- 1140

Query: 273  MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
             L +   ++  T+ S ++AC+N       K VHA ++        +F L V NALVT+Y 
Sbjct: 1141 -LQMGKVMNHVTFASALAACSNPECLIESKIVHALII---VAGFHDF-LIVGNALVTMYG 1195

Query: 333  KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
            K G + EA+ +   MP+ D V+WNA                               +I G
Sbjct: 1196 KLGMMMEAKKVLQTMPQPDRVTWNA-------------------------------LIGG 1224

Query: 393  LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA-------LENGRQLHAQLV 445
             A+N    E +K +  +R +G  P +Y     IT  + LGA       L++G  +HA +V
Sbjct: 1225 HAENEEPNEAVKAYKLIREKGI-PANY-----ITMVSVLGACSAPDDLLKHGMPIHAHIV 1278

Query: 446  HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIE 505
             +G++S     N+LITMYA+CG + ++N +F+ + N   ++WNAM+AA   HG G  A++
Sbjct: 1279 LTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALK 1338

Query: 506  LYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG---PYGIPPGEDHYARFI 562
            ++ +M   G+  D+ +F   L+A  +  +++EG++    +HG     G           +
Sbjct: 1339 IFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQ----LHGLVIKLGFESDLHVTNAAM 1394

Query: 563  DLLCRAGKFSEAKDVIDSL--PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
            D+    GK  E  DV+  L  P   S   W  L++    HG      +   ++ +L P
Sbjct: 1395 DMY---GKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGP 1449



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 136/522 (26%), Positives = 232/522 (44%), Gaps = 82/522 (15%)

Query: 81   IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
            I    TLI  YS   N++ AR +F++  ++ R+   ++ M++ Y        A+ LF  M
Sbjct: 779  IFQTNTLINMYSKFGNIEHARYVFDE--MRHRNEASWSTMLSGYVRVGLYEEAVGLFCQM 836

Query: 141  RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVS 200
                V+P+ F   S+++A +       +  Q+H  VVK+G          L  VYV    
Sbjct: 837  WGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGI---------LGDVYVGTAL 887

Query: 201  SPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWN 260
              F  S  L+  A+++F+EMP+ + +SWT++M GY                S N G   N
Sbjct: 888  VHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSD--------------SGNPGEVLN 933

Query: 261  ALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFR---LGKQVHAYLLRTEAKPTP 317
                       +M    +  ++ T+ +V S+C   GL     LG QV  ++++       
Sbjct: 934  VY--------QRMRQEGVSGNQNTFATVTSSC---GLLEDQVLGYQVLGHIIQYGF---- 978

Query: 318  EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
            E S+ V N+L++++     V EA  +F+ M E D++SWNA++SAY   GL  E+   F  
Sbjct: 979  EDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHW 1038

Query: 378  MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
            MR  +  + +  +S L       + LK                                G
Sbjct: 1039 MRHLHNETNSTTLSSLLSVCSSVDNLKW-------------------------------G 1067

Query: 438  RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
            R +H  +V  G DS++   N L+T+Y+  G  E A  VF  M   D +SWN+M+A   Q 
Sbjct: 1068 RGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQD 1127

Query: 498  GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
            G     +++  ++L+ G + + +TF + L+AC++   + E +     +H    +    D 
Sbjct: 1128 GKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESK----IVHALIIVAGFHDF 1183

Query: 558  YA---RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
                   + +  + G   EAK V+ ++P +P    W AL+ G
Sbjct: 1184 LIVGNALVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGG 1224



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 137/527 (25%), Positives = 245/527 (46%), Gaps = 80/527 (15%)

Query: 80   DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
            D+   T L+  Y +   V  A+++F + P    + V + +++  YS + N    + +++ 
Sbjct: 880  DVYVGTALVHFYGSIGLVYNAQKLFEEMP--DHNVVSWTSLMVGYSDSGNPGEVLNVYQR 937

Query: 140  MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
            MR++ V  +  TF +V S+  L+ E++    Q+   +++ G     SV N+LIS++    
Sbjct: 938  MRQEGVSGNQNTFATVTSSCGLL-EDQVLGYQVLGHIIQYGFEDSVSVANSLISMF---- 992

Query: 200  SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                 SS S +  A  VFD M E D +SW  M++ Y  +      RE L          W
Sbjct: 993  -----SSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGL---CRESLRCFH------W 1038

Query: 260  NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                         M  L  + +  T +S++S C++    + G+ +H  ++    K   + 
Sbjct: 1039 -------------MRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVV----KLGLDS 1081

Query: 320  SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
            ++ + N L+TLY + G+  +A  +F  M ERDL+SWN++++ YV                
Sbjct: 1082 NVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYV---------------- 1125

Query: 380  ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
                           Q+G   +GLK+ +++   G       FA A+ +C+    L   + 
Sbjct: 1126 ---------------QDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKI 1170

Query: 440  LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
            +HA ++ +G+   L  GNAL+TMY + G++  A  V  TMP  D V+WNA+I    ++  
Sbjct: 1171 VHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEE 1230

Query: 500  GARAIELYEQMLKEGILPDRITFLTVLSACNHA-GLVKEGRRYFETMHGPYGIPPGE-DH 557
               A++ Y+ + ++GI  + IT ++VL AC+    L+K G      +H    +   E D 
Sbjct: 1231 PNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGM----PIHAHIVLTGFESDD 1286

Query: 558  YAR--FIDLLCRAGKFSEAKDVIDSLPFKPSAPI-WEALLAGCRIHG 601
            Y +   I +  + G  + +  + D L  K  +PI W A++A    HG
Sbjct: 1287 YVKNSLITMYAKCGDLNSSNYIFDGLGNK--SPITWNAMVAANAHHG 1331



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 157/348 (45%), Gaps = 75/348 (21%)

Query: 152  FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
            F+ + S +A       + +   C V     G+F +  N LI++Y K  +         + 
Sbjct: 754  FSEITSQMA------GKALHAFCIVGSVNLGIFQT--NTLINMYSKFGN---------IE 796

Query: 212  AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
             AR VFDEM  R+E SW+TM++GYV+    +          E VG+              
Sbjct: 797  HARYVFDEMRHRNEASWSTMLSGYVRVGLYE----------EAVGLF------------C 834

Query: 272  KMLMLRIQLDEFTYTSVISACANSG-LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
            +M  L ++ + F   S+I+AC+ SG +   G QVH ++++T                   
Sbjct: 835  QMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILG--------------- 879

Query: 331  YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
                                D+    A++  Y S GL+  A+ LFE M + N++SWT ++
Sbjct: 880  --------------------DVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLM 919

Query: 391  SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
             G + +G   E L ++ +MR EG       FA   +SC  L     G Q+   ++  G++
Sbjct: 920  VGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFE 979

Query: 451  SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
             S+S  N+LI+M++    VE A  VF+ M   D +SWNAMI+A   HG
Sbjct: 980  DSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHG 1027



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 131/303 (43%), Gaps = 44/303 (14%)

Query: 279 QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
           +LD   Y  ++  C +    + G  +H +L+           L +N  L+  Y K G V 
Sbjct: 27  RLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGS----DLHLNTKLIIFYVKVGDVI 82

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGY 398
            AR++F+ MPER +VSW A++S Y                               +QNG 
Sbjct: 83  AARNVFDGMPERSVVSWTAMVSGY-------------------------------SQNGR 111

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
            E+   LFS MR  G K   + +  A+ +C  L  L+ G Q+   +    +  +L   +A
Sbjct: 112 FEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSA 171

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           L+  +++CG +E A+ +F TM   D VSWNAMI      G    +  ++  ML+ G++PD
Sbjct: 172 LVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPD 231

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETM----HGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
             T  +VL A    G +    +    +    +G Y I  G       I+   + G    A
Sbjct: 232 CYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTG-----LLINAYAKNGSLRSA 286

Query: 575 KDV 577
           KD+
Sbjct: 287 KDL 289



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 111/499 (22%), Positives = 200/499 (40%), Gaps = 103/499 (20%)

Query: 16   YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
            +AS L  C   NP     ++ VHA +I +GF     + N L+ +Y K   ++ A+ +   
Sbjct: 1152 FASALAACS--NPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQT 1209

Query: 76   IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
            +PQPD V                                  +NA+I  ++ N   + A++
Sbjct: 1210 MPQPDRVT---------------------------------WNALIGGHAENEEPNEAVK 1236

Query: 136  LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
             ++ +R   +  +  T  SVL A +   +  K  M +H  +V +G      V N+LI++Y
Sbjct: 1237 AYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMY 1296

Query: 196  VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
             KC           + ++  +FD +  +  ++W  M+     +   + A +    M  NV
Sbjct: 1297 AKCGD---------LNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEM-RNV 1346

Query: 256  GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
            GV                      LD+F+++  ++A AN  +   G+Q+H  ++    K 
Sbjct: 1347 GV---------------------NLDQFSFSGGLAATANLAVLEEGQQLHGLVI----KL 1381

Query: 316  TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
              E  L V NA + +Y KCG++++   +  Q   R  +SWN ++SA+   G   +A+  F
Sbjct: 1382 GFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETF 1441

Query: 376  EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
              M                        LKL       G KP    F   +++C   G ++
Sbjct: 1442 HEM------------------------LKL-------GPKPDHVTFVSLLSACNHGGLVD 1470

Query: 436  NGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAA 493
             G   +  +    G    +     +I +  R G +  A      MP   + ++W +++AA
Sbjct: 1471 EGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAA 1530

Query: 494  LGQHGNGARAIELYEQMLK 512
               HGN   A +  E +L+
Sbjct: 1531 CRIHGNLELARKTAEHLLE 1549



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 97/218 (44%), Gaps = 39/218 (17%)

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           G+ LHA  +    +  +   N LI MY++ G +E A  VF+ M + +  SW+ M++   +
Sbjct: 763 GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 822

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG-LVKEGRRYFETMHGPYGIPPGE 555
            G    A+ L+ QM   G+ P+     ++++AC+ +G +  EG +    +HG        
Sbjct: 823 VGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQ----VHG-------- 870

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
                    + + G   +               +  AL+     +G+I L +  A++LF+
Sbjct: 871 --------FVVKTGILGDVY-------------VGTALV---HFYGSIGL-VYNAQKLFE 905

Query: 616 LMP-HHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
            MP H+  ++  L   Y++ G   +   V + MR  GV
Sbjct: 906 EMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGV 943


>gi|356560286|ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 263/813 (32%), Positives = 409/813 (50%), Gaps = 105/813 (12%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L   VHA ++  GF    H+   LI++Y K L +  A  +FDE                 
Sbjct: 149 LGMEVHACLVKRGFHVDVHLSCALINLYEKYLGIDGANQVFDE----------------- 191

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                         TPL+  +   +N ++ A   +     A+ELFR M+    K  + T 
Sbjct: 192 --------------TPLQ--EDFLWNTIVMANLRSEKWEDALELFRRMQSASAKATDGTI 235

Query: 153 TSVLSALALI--VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
             +L A   +  + E KQ   +H  V++ G    TS+ N+++S+Y         S  + +
Sbjct: 236 VKLLQACGKLRALNEGKQ---IHGYVIRFGRVSNTSICNSIVSMY---------SRNNRL 283

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV-----AWNALISG 265
             AR  FD   + +  SW ++++ Y  ND L+ A + L  M E+ GV      WN+L+SG
Sbjct: 284 ELARVAFDSTEDHNSASWNSIISSYAVNDCLNGAWDLLQEM-ESSGVKPDIITWNSLLSG 342

Query: 266 YVHR---ELKMLMLR------IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
           ++ +   E  +   R       + D  + TS + A    G F LGK++H Y++R++    
Sbjct: 343 HLLQGSYENVLTNFRSLQSAGFKPDSCSITSALQAVIGLGCFNLGKEIHGYIMRSKL--- 399

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
            E+ + V  +LV  Y K   +++A  +F+    +++ +WN+++S Y   GL D A+ L  
Sbjct: 400 -EYDVYVCTSLVDKYIKNDCLDKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLN 458

Query: 377 AMRER---------------------------------------NLLSWTVMISGLAQNG 397
            M+E                                        N++SWT MISG  QN 
Sbjct: 459 QMKEEGIKPDLVTWNSLVSGYSMSGRSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNE 518

Query: 398 YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN 457
              + L+ FSQM+ E  KP        + +CAG   L+ G ++H   +  G+   +    
Sbjct: 519 NYMDALQFFSQMQEENVKPNSTTICTLLRACAGSSLLKIGEEIHCFSMRHGFLDDIYIAT 578

Query: 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
           ALI MY + G ++ A+ VF  +       WN M+     +G+G     L+++M K G+ P
Sbjct: 579 ALIDMYGKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDEMRKTGVRP 638

Query: 518 DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577
           D ITF  +LS C ++GLV +G +YF++M   Y I P  +HY+  +DLL +AG   EA D 
Sbjct: 639 DAITFTALLSGCKNSGLVMDGWKYFDSMKTDYNINPTIEHYSCMVDLLGKAGFLDEALDF 698

Query: 578 IDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRW 637
           I ++P K  A IW A+LA CR+H +I +   AA  L +L P+++  Y L+ N+Y+   RW
Sbjct: 699 IHAVPQKADASIWGAVLAACRLHKDIKIAEIAARNLLRLEPYNSANYALMMNIYSTFDRW 758

Query: 638 DDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKL 697
            D  R+++ M   GVK     SWI+V   +HVF  +  +HPE   +Y  L QL+ E++KL
Sbjct: 759 GDVERLKESMTALGVKIPNVWSWIQVKQTIHVFSTEGKSHPEEGEIYFELYQLISEIKKL 818

Query: 698 GYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAF 757
           GYV D   V  +++  +KE  L +H+EKLA+ +GLMK  GG+ +RV+KN RIC DCH   
Sbjct: 819 GYVLDINCVHQNIDDSEKEKVLLSHTEKLAMTYGLMKTKGGSPIRVVKNTRICHDCHTTA 878

Query: 758 KFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           K++S    REI +RDG RFHHF +G+CSC D W
Sbjct: 879 KYISLARNREIFLRDGGRFHHFMNGECSCKDRW 911



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 132/604 (21%), Positives = 254/604 (42%), Gaps = 70/604 (11%)

Query: 112 RDTVFYNAMITAY-SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM 170
           R+ + +N+ I  + S   + H  + +F+++    VK D+   T VL  + L + E    M
Sbjct: 93  RNYLLWNSFIEEFASFGGDSHEILAVFKELHDKGVKFDSKALTVVLK-ICLALMELWLGM 151

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           ++H  +VK G  +   +  ALI++Y K +          +  A +VFDE P +++  W T
Sbjct: 152 EVHACLVKRGFHVDVHLSCALINLYEKYLG---------IDGANQVFDETPLQEDFLWNT 202

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++   ++++  + A E    M      A +                       T   ++ 
Sbjct: 203 IVMANLRSEKWEDALELFRRMQSASAKATDG----------------------TIVKLLQ 240

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           AC        GKQ+H Y++R            + N++V++Y +  ++  AR  F+   + 
Sbjct: 241 ACGKLRALNEGKQIHGYVIRFGRVSNTS----ICNSIVSMYSRNNRLELARVAFDSTEDH 296

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRER----NLLSWTVMISGLAQNGYGEEGLKLF 406
           +  SWN+I+S+Y     ++ A  L + M       ++++W  ++SG    G  E  L  F
Sbjct: 297 NSASWNSIISSYAVNDCLNGAWDLLQEMESSGVKPDIITWNSLLSGHLLQGSYENVLTNF 356

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
             ++  GFKP   +   A+ +  GLG    G+++H  ++ S  +  +    +L+  Y + 
Sbjct: 357 RSLQSAGFKPDSCSITSALQAVIGLGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDKYIKN 416

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
             ++ A  VF+   N +  +WN++I+     G    A +L  QM +EGI PD +T+ +++
Sbjct: 417 DCLDKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLV 476

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP---F 583
           S  + +G  +E       +    G+ P    +   I   C+   + +A      +     
Sbjct: 477 SGYSMSGRSEEALAVINRIKS-LGLTPNVVSWTAMISGCCQNENYMDALQFFSQMQEENV 535

Query: 584 KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA---GTYV--LLSNMYANLGRWD 638
           KP++     LL  C     + +G    E++      H      Y+   L +MY   G+  
Sbjct: 536 KPNSTTICTLLRACAGSSLLKIG----EEIHCFSMRHGFLDDIYIATALIDMYGKGGKLK 591

Query: 639 DAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLG 698
            A  V      R +K++    W       +  ++    +   + V+   +    EMRK G
Sbjct: 592 VAHEVF-----RNIKEKTLPCW-------NCMMMGYAIYGHGEEVFTLFD----EMRKTG 635

Query: 699 YVPD 702
             PD
Sbjct: 636 VRPD 639



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 95/443 (21%), Positives = 201/443 (45%), Gaps = 62/443 (13%)

Query: 20  LQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQP 79
           LQ C     +     + +H ++I  G      I N ++ +Y ++ +L  AR  FD     
Sbjct: 239 LQACGKLRALNE--GKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARVAFDSTEDH 296

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLK--MRDTVFYNAMITAYSHNSNGHAAIELF 137
           +  +  ++I++Y+ +D +  A ++  +        D + +N++++ +    +    +  F
Sbjct: 297 NSASWNSIISSYAVNDCLNGAWDLLQEMESSGVKPDIITWNSLLSGHLLQGSYENVLTNF 356

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM----QMHCTVVKSGTGLFTSVLNALIS 193
           R ++    KPD+ + TS L A+  +      C     ++H  +++S       V  +L+ 
Sbjct: 357 RSLQSAGFKPDSCSITSALQAVIGL-----GCFNLGKEIHGYIMRSKLEYDVYVCTSLVD 411

Query: 194 VYVK-------------------CVSSPFVSS---RSLMGAARRVFDEMPER----DELS 227
            Y+K                   C  +  +S    + L   A ++ ++M E     D ++
Sbjct: 412 KYIKNDCLDKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVT 471

Query: 228 WTTMMTGYVKNDYLDAAREFLD-----GMSENVGVAWNALISGYVHRELKMLMLR----- 277
           W ++++GY  +   + A   ++     G++ NV V+W A+ISG    E  M  L+     
Sbjct: 472 WNSLVSGYSMSGRSEEALAVINRIKSLGLTPNV-VSWTAMISGCCQNENYMDALQFFSQM 530

Query: 278 ----IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
               ++ +  T  +++ ACA S L ++G+++H + +R          + +  AL+ +Y K
Sbjct: 531 QEENVKPNSTTICTLLRACAGSSLLKIGEEIHCFSMRHGFLD----DIYIATALIDMYGK 586

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL----LSWTVM 389
            GK+  A ++F  + E+ L  WN ++  Y   G  +E  +LF+ MR+  +    +++T +
Sbjct: 587 GGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDEMRKTGVRPDAITFTAL 646

Query: 390 ISGLAQNGYGEEGLKLFSQMRLE 412
           +SG   +G   +G K F  M+ +
Sbjct: 647 LSGCKNSGLVMDGWKYFDSMKTD 669



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 124/289 (42%), Gaps = 14/289 (4%)

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQ---MPE-RDLVSWN-AILSAYVSAGLIDE 370
           +P+FS P  +     + +   +N  R++  Q   MP+ R+LV+ + +++  Y+  G  + 
Sbjct: 23  SPQFSPPKFSPFFHPFGEIRTLNSVRELHAQIIKMPKKRNLVTMDGSMMRNYLQFGDFES 82

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQ-NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
           A  +F     RN L W   I   A   G   E L +F ++  +G K    A    +  C 
Sbjct: 83  ATKVFFVGFARNYLLWNSFIEEFASFGGDSHEILAVFKELHDKGVKFDSKALTVVLKICL 142

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
            L  L  G ++HA LV  G+   +    ALI +Y +   ++ AN VF+  P  +   WN 
Sbjct: 143 ALMELWLGMEVHACLVKRGFHVDVHLSCALINLYEKYLGIDGANQVFDETPLQEDFLWNT 202

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG-- 547
           ++ A  +      A+EL+ +M          T + +L AC     + EG++    +HG  
Sbjct: 203 IVMANLRSEKWEDALELFRRMQSASAKATDGTIVKLLQACGKLRALNEGKQ----IHGYV 258

Query: 548 -PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
             +G           + +  R  +   A+   DS     SA  W ++++
Sbjct: 259 IRFGRVSNTSICNSIVSMYSRNNRLELARVAFDSTEDHNSAS-WNSIIS 306


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/629 (36%), Positives = 359/629 (57%), Gaps = 39/629 (6%)

Query: 167 KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDEL 226
           +Q  Q+H  ++ +G  L     N L+    K +SS F      +  A  VFD  P+ D  
Sbjct: 15  RQIKQVHARLITTGLILHPIPTNKLL----KQLSSIFAP----ISYAHMVFDHFPQPDLF 66

Query: 227 SWTTMMT--GYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFT 284
            + T++    +      D+  +F   + E                       R+  ++++
Sbjct: 67  LYNTIIKVLAFSTTSSADSFTKFRSLIREE----------------------RLVPNQYS 104

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           +      C +      G+QV  + +    K   E +L V NAL+ +Y     V +AR +F
Sbjct: 105 FAFAFKGCGSGVGVLEGEQVRVHAI----KLGLENNLFVTNALIGMYVNLDFVVDARKVF 160

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           +  P RD+ SWN +LS Y   G +DEA+ LF+ M E++++SWT MISG  Q GY  E L 
Sbjct: 161 DWSPNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALD 220

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           +F  M  +G  P +Y  A ++ +CA L AL+ GR +H  +  +    +      LI MYA
Sbjct: 221 IFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYA 280

Query: 465 RCGVVEAANCVFNTMPNVDSV--SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF 522
           +CG +E A+ +FN+ P +      WNAMI     HG    AIE++EQM  E + P+++TF
Sbjct: 281 KCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTF 340

Query: 523 LTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582
           + +L+AC+H   V+EGR YFE+M   Y + P  +HY   +DLL RAG+  EA+++I S+ 
Sbjct: 341 VALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMH 400

Query: 583 FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAAR 642
             P   IW ALL+ C+IH + ++G +  + + +L P+H G +VLL+N+Y+  G W++A  
Sbjct: 401 LTPDVAIWGALLSACKIHKDAEMGERVGKIVKELDPNHLGCHVLLANIYSLTGNWNEART 460

Query: 643 VRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPD 702
           +R+ + + G KK PGCS IE++   H FLV D +HP+ + +Y +L++++ +++  GY+P+
Sbjct: 461 LREKIAESGKKKTPGCSSIELNGMFHQFLVGDRSHPQTKQLYLFLDEMITKLKIAGYIPE 520

Query: 703 TKFVLHDMESDQ-KEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMS 761
           +  VL D++ ++ +E AL  HSEKLA+AFGLM       +R++KNLR+C DCH A KF+S
Sbjct: 521 SGEVLLDIDDNEDRETALLKHSEKLAIAFGLMNTTPKTPIRIVKNLRVCSDCHLAIKFIS 580

Query: 762 KVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KV  REI+VRD  R+HHF+DG CSC DYW
Sbjct: 581 KVYDREIIVRDRIRYHHFKDGTCSCNDYW 609



 Score =  129 bits (323), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 115/484 (23%), Positives = 197/484 (40%), Gaps = 98/484 (20%)

Query: 35  RSVHAHMISSGFK----PREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
           + VHA +I++G      P   ++ +L  I+     + YA  +FD  PQPD+    T+I  
Sbjct: 18  KQVHARLITTGLILHPIPTNKLLKQLSSIFAP---ISYAHMVFDHFPQPDLFLYNTIIK- 73

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
                                         + A+S  S+  +  +    +R + + P+ +
Sbjct: 74  ------------------------------VLAFSTTSSADSFTKFRSLIREERLVPNQY 103

Query: 151 TFTSVLSALALIVEE-EKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           +F          V   E + +++H   +     LF  V NALI +YV      FV     
Sbjct: 104 SFAFAFKGCGSGVGVLEGEQVRVHAIKLGLENNLF--VTNALIGMYVNL---DFVVD--- 155

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS----- 264
              AR+VFD  P RD  SW  M++GY +   +D AR+  D M E   V+W  +IS     
Sbjct: 156 ---ARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQV 212

Query: 265 GYVHREL----KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
           GY    L     ML   +  +E+T  S ++ACAN      G+ +H Y+     K   + +
Sbjct: 213 GYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYI----KKNNIQMN 268

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMP--ERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
             +   L+ +Y KCG++  A  +FN  P  +R +  WNA++  +                
Sbjct: 269 ERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGF---------------- 312

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
                          A +G  +E +++F QM++E   P    F   + +C+    +E GR
Sbjct: 313 ---------------AVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGR 357

Query: 439 QLHAQLV-HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQ 496
                +  H      L     L+ +  R G ++ A  + ++M     V+ W A+++A   
Sbjct: 358 YYFESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKI 417

Query: 497 HGNG 500
           H + 
Sbjct: 418 HKDA 421


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/562 (40%), Positives = 328/562 (58%), Gaps = 35/562 (6%)

Query: 222 ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLD 281
           E D     +++  Y     L AA++     S+   V+WNA+I GYV R  +M   R+  D
Sbjct: 32  ECDSYIVNSLIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGYVKRG-EMGHTRMVFD 90

Query: 282 EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEAR 341
                 VIS                                  N ++  Y   GK++EA+
Sbjct: 91  RMVCRDVISW---------------------------------NTIINGYAIVGKIDEAK 117

Query: 342 DIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEE 401
            +F++MPER+LVSWN++LS +V  G ++EA  LF  M  R+++SW  M++  AQ G   E
Sbjct: 118 RLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNE 177

Query: 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALIT 461
            L LF QMR  G KP +      +++CA LGAL+ G  LH  +  +  + +   G AL+ 
Sbjct: 178 ALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVD 237

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           MYA+CG +  A  VFN M + D ++WN +IA +  HG+   A +L+++M +  + P+ IT
Sbjct: 238 MYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDIT 297

Query: 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581
           F+ +LSAC+HAG+V EG++  + M   YGI P  +HY   IDLL RAG   EA ++I ++
Sbjct: 298 FVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTM 357

Query: 582 PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAA 641
           P +P+     ALL GCRIHGN +LG    ++L  L P H+G Y+LLSN+YA   +WDDA 
Sbjct: 358 PMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDAR 417

Query: 642 RVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRK-LGYV 700
           +VR LM+  G+ K PG S IE+   VH F+  D +HPE+  +Y  L ++   ++  +GY 
Sbjct: 418 KVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYDKLNEIHTRLKSAIGYS 477

Query: 701 PDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFM 760
            DT  VL DME + KE+AL+ HSEKLA+A+GL+ L     +R++KNLR+C DCH+  K +
Sbjct: 478 ADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLI 537

Query: 761 SKVVGREIVVRDGKRFHHFRDG 782
           SKV GREI+VRD  RFHHF DG
Sbjct: 538 SKVYGREIIVRDRNRFHHFEDG 559



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 181/434 (41%), Gaps = 102/434 (23%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           VH H++ SGF+   +I+N LI +Y     L  A+ LF                    SD 
Sbjct: 22  VHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFS-----------------LCSD- 63

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSN-GHAAIELFRDMRRDDVKPDNFTFTSV 155
                          RD V +NAMI  Y      GH  +   R + RD +     ++ ++
Sbjct: 64  ---------------RDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVI-----SWNTI 103

Query: 156 LSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARR 215
           ++  A++ +                                             +  A+R
Sbjct: 104 INGYAIVGK---------------------------------------------IDEAKR 118

Query: 216 VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH----REL 271
           +FDEMPER+ +SW +M++G+VK   ++ A      M     V+WN++++ Y       E 
Sbjct: 119 LFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEA 178

Query: 272 -----KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                +M  + ++  E T  S++SACA+ G    G  +H Y+         E +  V  A
Sbjct: 179 LALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRI----EVNSIVGTA 234

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER----N 382
           LV +Y KCGK++ A  +FN M  +D+++WN I++     G + EA+ LF+ M+E     N
Sbjct: 235 LVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPN 294

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSCAGLGALENGRQLH 441
            +++  M+S  +  G  +EG KL   M    G +P    +   I   A  G LE   +L 
Sbjct: 295 DITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELI 354

Query: 442 AQLVHSGYDSSLSA 455
             +      S+L A
Sbjct: 355 GTMPMEPNPSALGA 368



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 122/306 (39%), Gaps = 67/306 (21%)

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           G  +H  +V SG++      N+LI +YA    + AA  +F+   + D VSWNAMI    +
Sbjct: 19  GLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGYVK 78

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETM----------- 545
            G       ++++M    +  D I++ T+++     G + E +R F+ M           
Sbjct: 79  RGEMGHTRMVFDRM----VCRDVISWNTIINGYAIVGKIDEAKRLFDEMPERNLVSWNSM 134

Query: 546 -HGPYGIPPGEDHYARFIDLLCR--------------AGKFSEAKDVID---SLPFKPSA 587
             G       E+ +  F ++ CR               GK +EA  + D   ++  KP+ 
Sbjct: 135 LSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTE 194

Query: 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYV-------------LLSNMYANL 634
               +LL+ C   G +D G+            H  TY+              L +MYA  
Sbjct: 195 ATVVSLLSACAHLGALDKGL------------HLHTYINDNRIEVNSIVGTALVDMYAKC 242

Query: 635 GRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEM 694
           G+   A +V   M  + V      +W    N +   +       EAQ ++K +++  +E 
Sbjct: 243 GKISLATQVFNAMESKDV-----LAW----NTIIAGMAIHGHVKEAQQLFKEMKEASVEP 293

Query: 695 RKLGYV 700
             + +V
Sbjct: 294 NDITFV 299


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 252/707 (35%), Positives = 378/707 (53%), Gaps = 68/707 (9%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           T L A Y+   ++  A+ +F++  LK  ++  +N+MI  Y+ N++   A+ L+  M    
Sbjct: 62  TKLAACYAVCGHMPYAQHIFDQIVLK--NSFLWNSMIRGYACNNSPSRALFLYLKMLHFG 119

Query: 145 VKPDNFTFTSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
            KPDNFT+  VL A   L++ E  +  ++H  VV  G      V N+++S+Y K      
Sbjct: 120 QKPDNFTYPFVLKACGDLLLREMGR--KVHALVVVGGLEEDVYVGNSILSMYFKFGD--- 174

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
                 + AAR VFD M  RD  SW TMM+G+VKN     A E    M  +         
Sbjct: 175 ------VEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRD--------- 219

Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
            G+V             D  T  +++SAC +    ++GK++H Y++R       E     
Sbjct: 220 -GFVG------------DRTTLLALLSACGDVMDLKVGKEIHGYVVRN-----GESGRVC 261

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
           N  L+                           N+I+  Y +   +  A+ LFE +R +++
Sbjct: 262 NGFLM---------------------------NSIIDMYCNCESVSCARKLFEGLRVKDV 294

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
           +SW  +ISG  + G   + L+LF +M + G  P +      + +C  + AL  G  + + 
Sbjct: 295 VSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSY 354

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
           +V  GY  ++  G ALI MYA CG +  A  VF+ MP  +  +   M+   G HG G  A
Sbjct: 355 VVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREA 414

Query: 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563
           I ++ +ML +G+ PD   F  VLSAC+H+GLV EG+  F  M   Y + P   HY+  +D
Sbjct: 415 ISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVD 474

Query: 564 LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623
           LL RAG   EA  VI+++  KP+  +W ALL+ CR+H N+ L + +A++LF+L P     
Sbjct: 475 LLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSG 534

Query: 624 YVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAV 683
           YV LSN+YA   RW+D   VR L+  R ++K P  S++E++  VH F V DT+H ++  +
Sbjct: 535 YVCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQSDDI 594

Query: 684 YKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRV 743
           Y  L+ L  +++K GY PDT  VL+D+E + KE  L  HSE+LA+AF L+    G T+R+
Sbjct: 595 YAKLKDLNEQLKKAGYKPDTSLVLYDVEEEIKEKMLWDHSERLALAFALINTGPGTTIRI 654

Query: 744 LKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            KNLR+CGDCH   K +SK+  REI++RD  RFHHFRDG CSCG YW
Sbjct: 655 TKNLRVCGDCHTVIKMISKLTNREIIMRDICRFHHFRDGLCSCGGYW 701



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 139/338 (41%), Gaps = 82/338 (24%)

Query: 33  LARSVHAHMISSGFKPR---EHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           + + +H +++ +G   R     ++N +ID+YC    +  AR LF+ +   D+V+  +LI+
Sbjct: 243 VGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLIS 302

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
            Y                                     +   A+ELF  M      PD 
Sbjct: 303 GYEKC---------------------------------GDAFQALELFGRMVVVGAVPDE 329

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
            T  SVL+A   I    +    +   VVK G  +   V  ALI +Y  C S         
Sbjct: 330 VTVISVLAACNQI-SALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGS--------- 379

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +  A RVFDEMPE++  + T M+TG+  +      RE +    E +G             
Sbjct: 380 LVCACRVFDEMPEKNLPACTVMVTGFGIH---GRGREAISIFYEMLGKG----------- 425

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR---TEAKPTPEFSLPVNNA 326
                   +  DE  +T+V+SAC++SGL   GK++   + R    E +PT        + 
Sbjct: 426 --------VTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHY------SC 471

Query: 327 LVTLYWKCGKVNEARDIFNQM---PERDLVSWNAILSA 361
           LV L  + G ++EA  +   M   P  D+  W A+LSA
Sbjct: 472 LVDLLGRAGYLDEAYAVIENMKLKPNEDV--WTALLSA 507


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/579 (38%), Positives = 340/579 (58%), Gaps = 45/579 (7%)

Query: 222 ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH----RELKMLMLR 277
           E D L+   ++  Y K   +D+AR+  + M     V+WN +I         RE   L+++
Sbjct: 75  EMDILTSNMLINMYSKCSLVDSARKKFNEMPVKSLVSWNTVIGALTQNAEDREALKLLIQ 134

Query: 278 IQ-----LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           +Q      +EFT +SV+  CA         Q+HA+ +    K   + +  V  AL+ +Y 
Sbjct: 135 MQREGTPFNEFTISSVLCNCAFKCAILECMQLHAFSI----KAAIDSNCFVGTALLHVYA 190

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           KC                                 I +A  +FE+M E+N ++W+ M++G
Sbjct: 191 KCSS-------------------------------IKDASQMFESMPEKNAVTWSSMMAG 219

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
             QNG+ EE L +F   +L GF    +  + A+++CAGL  L  G+Q+HA    SG+ S+
Sbjct: 220 YVQNGFHEEALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSN 279

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDS-VSWNAMIAALGQHGNGARAIELYEQML 511
           +   ++LI MYA+CG +  A  VF  +  V S V WNAMI+   +H     A+ L+E+M 
Sbjct: 280 IYVSSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQ 339

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571
           + G  PD +T++ VL+AC+H GL +EG++YF+ M   + + P   HY+  ID+L RAG  
Sbjct: 340 QRGFFPDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLV 399

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631
            +A D+I+ +PF  ++ +W +LLA C+I+GNI+    AA+ LF++ P++AG ++LL+N+Y
Sbjct: 400 HKAYDLIERMPFNATSSMWGSLLASCKIYGNIEFAEIAAKYLFEMEPNNAGNHILLANIY 459

Query: 632 ANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLV 691
           A   +WD+ AR RKL+R+  V+KE G SWIE+ NK+H F V +  HP+   +Y  L+ LV
Sbjct: 460 AANKKWDEVARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDIYAKLDNLV 519

Query: 692 LEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICG 751
           +E++KL Y  DT   LHD+E ++K+  L  HSEKLA+ FGLM LP    +R++KNLRICG
Sbjct: 520 VELKKLNYKVDTSNDLHDVEENRKQMLLRHHSEKLAITFGLMCLPRDIPIRIIKNLRICG 579

Query: 752 DCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           DCH   K +SK   REI+VRD  RFHHF+DG CSCG++W
Sbjct: 580 DCHTFMKLVSKSTSREIIVRDTNRFHHFKDGFCSCGEFW 618



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 119/426 (27%), Positives = 192/426 (45%), Gaps = 78/426 (18%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           DI+    LI  YS    V  AR+ FN+ P+K    V +N +I A + N+    A++L   
Sbjct: 77  DILTSNMLINMYSKCSLVDSARKKFNEMPVK--SLVSWNTVIGALTQNAEDREALKLLIQ 134

Query: 140 MRRDDVKPDNFTFTSVLSALAL---IVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           M+R+    + FT +SVL   A    I+E    CMQ+H   +K+       V  AL+ VY 
Sbjct: 135 MQREGTPFNEFTISSVLCNCAFKCAILE----CMQLHAFSIKAAIDSNCFVGTALLHVYA 190

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           KC S         +  A ++F+ MPE++ ++W++MM GYV+N + +          E + 
Sbjct: 191 KCSS---------IKDASQMFESMPEKNAVTWSSMMAGYVQNGFHE----------EALL 231

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
           +  NA + G+              D F  +S +SACA       GKQVHA       K  
Sbjct: 232 IFRNAQLMGF------------DQDPFMISSAVSACAGLATLIEGKQVHA----ISHKSG 275

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE-RDLVSWNAILSAYVSAGLIDEAKSLF 375
              ++ V+++L+ +Y KCG + EA  +F  + E R +V WNA++S +       EA  LF
Sbjct: 276 FGSNIYVSSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILF 335

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
           E M++R                               GF P D  +   + +C+ +G  E
Sbjct: 336 EKMQQR-------------------------------GFFPDDVTYVCVLNACSHMGLHE 364

Query: 436 NGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAA 493
            G++    +V       S+   + +I +  R G+V  A  +   MP N  S  W +++A+
Sbjct: 365 EGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDLIERMPFNATSSMWGSLLAS 424

Query: 494 LGQHGN 499
              +GN
Sbjct: 425 CKIYGN 430



 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 158/362 (43%), Gaps = 39/362 (10%)

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           ++  CA +     G+  HA ++R       E  +  +N L+ +Y KC  V+ AR  FN+M
Sbjct: 49  LLQLCAKTRSSMGGRACHAQIIRI----GLEMDILTSNMLINMYSKCSLVDSARKKFNEM 104

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
           P + LVSWN ++ A                               L QN    E LKL  
Sbjct: 105 PVKSLVSWNTVIGA-------------------------------LTQNAEDREALKLLI 133

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467
           QM+ EG    ++  +  + +CA   A+    QLHA  + +  DS+   G AL+ +YA+C 
Sbjct: 134 QMQREGTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVGTALLHVYAKCS 193

Query: 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
            ++ A+ +F +MP  ++V+W++M+A   Q+G    A+ ++      G   D     + +S
Sbjct: 194 SIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLIFRNAQLMGFDQDPFMISSAVS 253

Query: 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSA 587
           AC     + EG++     H   G        +  ID+  + G   EA  V   +    S 
Sbjct: 254 ACAGLATLIEGKQVHAISHKS-GFGSNIYVSSSLIDMYAKCGCIREAYLVFQGVLEVRSI 312

Query: 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQ--LMPHHAGTYVLLSNMYANLGRWDDAARVRK 645
            +W A+++G   H      +   E++ Q    P    TYV + N  +++G  ++  +   
Sbjct: 313 VLWNAMISGFARHARAPEAMILFEKMQQRGFFPDDV-TYVCVLNACSHMGLHEEGQKYFD 371

Query: 646 LM 647
           LM
Sbjct: 372 LM 373


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/633 (36%), Positives = 360/633 (56%), Gaps = 47/633 (7%)

Query: 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS 227
           Q  Q H  +++ G      ++  LI+   +       S+   +  A ++FD +P+ D   
Sbjct: 37  QLRQYHSQIIRLGLSSHNHLIPPLINFCAR------ASTSDALTYALKLFDSIPQPDAFL 90

Query: 228 WTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTS 287
           + T++ G++ +  L                  N+++  Y H    ML   +  + FT+ S
Sbjct: 91  YNTIIKGFLHSQLLPT----------------NSILLLYSH----MLQNSVLPNNFTFPS 130

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN----NALVTLYWKCGKVNEARDI 343
           ++ AC      + G Q+HA+L +        F    +    N+L+ +Y     + EAR +
Sbjct: 131 LLIACRK---IQHGMQIHAHLFK--------FGFGAHSVCLNSLIHMYVTFQALEEARRV 179

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
           F+ +P  D VSW +++S Y   GLIDEA ++F+ M ++N  SW  M++   Q     E  
Sbjct: 180 FHTIPHPDSVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAF 239

Query: 404 KLFSQMRLEGFKPCD-YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITM 462
            LF +M+ E     D +     +++C GLGAL+ G+ +H  +  +G +       A++ M
Sbjct: 240 ALFDRMKAENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDM 299

Query: 463 YARCGVVEAANCVFNTMPNVDS--VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI 520
           Y +CG +E A  VF+++P       SWN MI  L  HGNG  AI+L+++M ++ + PD I
Sbjct: 300 YCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDI 359

Query: 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580
           TFL +L+AC H+GLV+EGR YF  M   YGI P  +H+   +DLL RAG   EA+ +ID 
Sbjct: 360 TFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDE 419

Query: 581 LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA 640
           +P  P   +   LL  C+ H NI+LG +   ++ +L P+++G YVLL+N+YAN G+W+DA
Sbjct: 420 MPVSPDVTVLGTLLGACKKHRNIELGEEIGRRVIELEPNNSGRYVLLANLYANAGKWEDA 479

Query: 641 ARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYV 700
           A+VRKLM DRGVKK PG S IE+   VH F+  +  HP+A+ ++  + +++  ++ +GYV
Sbjct: 480 AKVRKLMDDRGVKKAPGFSMIELQGTVHEFIAGERNHPQAKELHAKVYEMLEHLKSVGYV 539

Query: 701 PDTKFVLHDMESDQK---EYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAF 757
            DT  VLH  + D++   E  L  HSEKLA+AFGL +   G T+R+LKNLRIC DCH+A 
Sbjct: 540 ADTNGVLHGHDFDEEEDGENPLYYHSEKLAIAFGLSRTKPGETLRILKNLRICEDCHHAC 599

Query: 758 KFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           K +S V  REI+VRD  RFH F+ G+CSC DYW
Sbjct: 600 KLISTVFDREIIVRDRTRFHRFKMGQCSCQDYW 632



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 137/501 (27%), Positives = 213/501 (42%), Gaps = 107/501 (21%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCK---SLKLVYARTLFDEIPQPDIVARTTLI 88
           S  R  H+ +I  G     H+I  LI+   +   S  L YA  LFD IPQP         
Sbjct: 36  SQLRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQP--------- 86

Query: 89  AAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS--NGHAAIELFRDMRRDDVK 146
                                   D   YN +I  + H+     ++ + L+  M ++ V 
Sbjct: 87  ------------------------DAFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVL 122

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           P+NFTF S+L A   I    +  MQ+H  + K G G  +  LN+LI +YV         +
Sbjct: 123 PNNFTFPSLLIACRKI----QHGMQIHAHLFKFGFGAHSVCLNSLIHMYV---------T 169

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              +  ARRVF  +P  D +SWT++++GY K   +D A      M +    +WNA+++ Y
Sbjct: 170 FQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAY 229

Query: 267 VH----RELKMLMLRIQ------LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
           V      E   L  R++      LD+F  T+++SAC   G    GK +H Y+ R      
Sbjct: 230 VQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGI--- 286

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--RDLVSWNAILSAYVSAGLIDEAKSL 374
            E    +  A+V +Y KCG + +A  +F+ +P   R + SWN                  
Sbjct: 287 -ELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNC----------------- 328

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
                         MI GLA +G GE  ++LF +M  +   P D  F   +T+CA  G +
Sbjct: 329 --------------MIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLV 374

Query: 435 ENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIA 492
           E GR   + ++   G +  +     ++ +  R G+V  A  + + MP + D      ++ 
Sbjct: 375 EEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLG 434

Query: 493 ALGQHGN-------GARAIEL 506
           A  +H N       G R IEL
Sbjct: 435 ACKKHRNIELGEEIGRRVIEL 455


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 252/695 (36%), Positives = 364/695 (52%), Gaps = 97/695 (13%)

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMR--RDDVKPDNFTFTSVLSALALIVEEE--K 167
           ++ V +N M+  +S   + H   +L R M    +DVK D  T   +L+A+ +  +E    
Sbjct: 340 KNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVT---ILNAVPVCFDESVLP 396

Query: 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS 227
              ++HC  +K        + NA ++ Y KC S  +         A+RVF          
Sbjct: 397 SLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSY---------AQRVFH--------- 438

Query: 228 WTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQL------- 280
                                 G+      +WNALI GY       L L   L       
Sbjct: 439 ----------------------GIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGL 476

Query: 281 --DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
             D FT  S++SAC+     RLGK+VH +++R                     W      
Sbjct: 477 LPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRN--------------------W------ 510

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGY 398
                     ERDL  + ++LS Y+  G +   + LF+AM + +L+SW  +I+G  QNG+
Sbjct: 511 ---------LERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGF 561

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
            E  L LF QM L G +PC  +      +C+ L +L  GR+ HA  +    + +     +
Sbjct: 562 PERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFIACS 621

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           +I MYA+ G +  ++ VFN +    + SWNAMI   G HG    AI+L+E+M + G  PD
Sbjct: 622 IIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPD 681

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVI 578
            +TFL VL+ACNH+GL+ EG RY + M   +G+ P   HYA  ID+L RAG+   A  V 
Sbjct: 682 DLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVA 741

Query: 579 DSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWD 638
             +  +P   IW +LL+ CRIH N+++G + A +LF L P     YVLLSN+YA LG+WD
Sbjct: 742 AEMSEEPDVGIWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGLGKWD 801

Query: 639 DAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDD---TAHPEAQAVYKYLEQLVLEMR 695
           D  +VR+ M++  ++K+ GCSWIE++ KV  F+V +       E ++++  LE   +++ 
Sbjct: 802 DVRQVRQRMKEMSLRKDAGCSWIELNGKVFSFVVGERFLDGFEEIKSLWSILE---MKIW 858

Query: 696 KLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHN 755
           K+GY PDT  V HD+  ++K   L  HSEKLA+ +GL+K   G T+RV KNLRIC DCHN
Sbjct: 859 KMGYRPDTSSVQHDLSEEEKIEQLRGHSEKLAITYGLIKTSEGTTLRVYKNLRICVDCHN 918

Query: 756 AFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           A K +SKV+ REIVVRD KRFHHF  G CSCGDYW
Sbjct: 919 AAKLISKVMEREIVVRDNKRFHHFNKGFCSCGDYW 953



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 117/463 (25%), Positives = 201/463 (43%), Gaps = 80/463 (17%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + D V  T +I  Y+   +   +R  F+   L+ ++   +NA+I++YS N   H  +E+F
Sbjct: 117 RSDDVLCTRIITMYAMCGSPDDSRSAFD--ALRSKNLFQWNAVISSYSRNELYHEVLEMF 174

Query: 138 RDM-RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
             M  +  + PDNFTF  V+ A A I  +    + +H  VVK+G      V NAL+S Y 
Sbjct: 175 IKMISKTHLLPDNFTFPCVIKACAGI-SDVGIGLAVHGLVVKTGLVEDLFVGNALVSFY- 232

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
                    +   +  A ++FD MPER+ +SW +M+            R F D   +   
Sbjct: 233 --------GTHGFVSDALKLFDIMPERNLVSWNSMI------------RVFSDNGDDGAF 272

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
           +                       D  T  +V+  CA      +GK VH + +    K +
Sbjct: 273 MP----------------------DVATVVTVLPVCAREREIGVGKGVHGWAV----KLS 306

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
            +  L VNNAL+ +Y K G + +++ IF     +++VSWN ++  + + G I      F+
Sbjct: 307 LDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDI---HGTFD 363

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
            +R+        M++G                   E  K  +     A+  C     L +
Sbjct: 364 LLRQ--------MLAG------------------SEDVKADEVTILNAVPVCFDESVLPS 397

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
            ++LH   +   +       NA +  YA+CG +  A  VF+ + +    SWNA+I    Q
Sbjct: 398 LKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQ 457

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
             +   +++ + QM   G+LPD  T  ++LSAC+    ++ G+
Sbjct: 458 SSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGK 500



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 101/452 (22%), Positives = 197/452 (43%), Gaps = 80/452 (17%)

Query: 50  EHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPL 109
           E ++  L +++C SLK  +   ++DE+           +A+Y+   ++  A+ +F+    
Sbjct: 392 ESVLPSLKELHCYSLKQEF---VYDEL------LANAFVASYAKCGSLSYAQRVFHGIRS 442

Query: 110 KMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC 169
           K  ++  +NA+I  Y+ +S+   +++    M+   + PDNFT  S+LSA + + +  +  
Sbjct: 443 KTLNS--WNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKL-KSLRLG 499

Query: 170 MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWT 229
            ++H  ++++       V  +++S+Y+ C           +   + +FD M +   +SW 
Sbjct: 500 KEVHGFIIRNWLERDLFVYLSVLSLYIHCGE---------LCTVQVLFDAMEDNSLVSWN 550

Query: 230 TMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVI 289
           T++TG+++N + + A                           +M++  IQ    +  +V 
Sbjct: 551 TVITGHLQNGFPERALGLFR----------------------QMVLYGIQPCGISMMTVF 588

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
            AC+     RLG++ HAY L    K   E +  +  +++ +Y K G + ++  +FN + E
Sbjct: 589 GACSLLPSLRLGREAHAYAL----KHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKE 644

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
           +   SWNA++  Y                                 +G  +E +KLF +M
Sbjct: 645 KSAASWNAMIMGY-------------------------------GMHGRAKEAIKLFEEM 673

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGV 468
           +  G  P D  F G +T+C   G L  G +   Q+  S G   +L     +I M  R G 
Sbjct: 674 QRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQ 733

Query: 469 VEAANCVFNTMPNVDSVS-WNAMIAALGQHGN 499
           ++ A  V   M     V  WN++++    H N
Sbjct: 734 LDNALRVAAEMSEEPDVGIWNSLLSWCRIHQN 765


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/706 (33%), Positives = 384/706 (54%), Gaps = 69/706 (9%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + D+    +L+  YS    + +A ++F   P+K  D   +NAMI+ +  N N   A+ + 
Sbjct: 153 EDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVK--DVGSWNAMISGFCQNGNAAGALGVL 210

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
             M+ + VK D  T  S+L   A   ++    + +H  V+K G      V NALI++Y  
Sbjct: 211 NRMKGEGVKMDTITVASILPVCAQ-SDDVINGVLIHLHVLKHGLDSDVFVSNALINMY-- 267

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
                  S    +  A+ VFD+M  RD +SW +++  Y +N+    A  F  GM      
Sbjct: 268 -------SKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQ----- 315

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                + G            I+ D  T  S+ S  +     R+ + +  +++R E     
Sbjct: 316 -----LGG------------IRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRRE----- 353

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
                         W                ++D+V  NA+++ Y   G ++ A ++F+ 
Sbjct: 354 --------------WL---------------DKDVVIGNALVNMYAKLGYMNCAHTVFDQ 384

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR-LEGFKPCDYAFAGAITSCAGLGALEN 436
           +  ++ +SW  +++G  QNG   E +  ++ M       P    +   I + + +GAL+ 
Sbjct: 385 LPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQ 444

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           G ++HA+L+ +     +     LI +Y +CG +E A  +F  +P   SV WNA+IA+LG 
Sbjct: 445 GMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGI 504

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
           HG G  A++L++ ML E +  D ITF+++LSAC+H+GLV EG++ F+ M   YGI P   
Sbjct: 505 HGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLK 564

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           HY   +DLL RAG   +A +++ ++P +P A IW ALL+ C+I+GN +LG  A+++L ++
Sbjct: 565 HYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEV 624

Query: 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTA 676
              + G YVLLSN+YAN  +W+   +VR L RDRG++K PG S + V +K  VF   +  
Sbjct: 625 DSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQT 684

Query: 677 HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLP 736
           HP+   +YK L+ L  +M+ LGYVPD  FV  D+E D+KE  L++HSE+LA+AFG++  P
Sbjct: 685 HPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTP 744

Query: 737 GGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDG 782
             + +R+ KNLR+CGDCHNA K++S++  REIVVRD  RFHHF+DG
Sbjct: 745 PRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDG 790



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 151/594 (25%), Positives = 271/594 (45%), Gaps = 93/594 (15%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAI----E 135
           +IV  T LI  Y    ++ L+R  F+   +  ++   +N++I+AY      H A+    +
Sbjct: 53  NIVLSTKLINLYVTHGDISLSRSTFDY--IHKKNIFSWNSIISAYVRFGKYHEAMNCVNQ 110

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LF       ++PD +TF  +L A   +V+ +K    +HC V K G      V  +L+ +Y
Sbjct: 111 LFSMCGGGHLRPDFYTFPPILKACVSLVDGKK----VHCCVFKMGFEDDVFVAASLVHLY 166

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
                    S   ++  A +VF +MP +D  SW  M++G+ +N                 
Sbjct: 167 ---------SRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQN----------------- 200

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           G A  AL  G ++R   M    +++D  T  S++  CA S     G  +H ++L    K 
Sbjct: 201 GNAAGAL--GVLNR---MKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVL----KH 251

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
             +  + V+NAL+ +Y K G++ +A+ +F+QM  RDLVSWN+I++AY             
Sbjct: 252 GLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAY------------- 298

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
                              QN      L+ F  M+L G +P         +  + L    
Sbjct: 299 ------------------EQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQR 340

Query: 436 NGRQLHAQLVHSGY-DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
             R +   ++   + D  +  GNAL+ MYA+ G +  A+ VF+ +P  D++SWN ++   
Sbjct: 341 ISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGY 400

Query: 495 GQHGNGARAIELYEQMLK-EGILPDRITFLTVLSACNHAGLVKEGRRYFETM--HGPYGI 551
            Q+G  + AI+ Y  M +    +P++ T+++++ A +H G +++G +    +  +  Y  
Sbjct: 401 TQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLY-- 458

Query: 552 PPGEDHYAR--FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609
               D +     IDL  + G+  +A  +   +P   S P W A++A   IHG  +  +Q 
Sbjct: 459 ---LDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVP-WNAIIASLGIHGRGEEALQL 514

Query: 610 -AEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM-RDRGVK---KEPGC 658
             + L + +     T+V L +  ++ G  D+  +   +M ++ G+K   K  GC
Sbjct: 515 FKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGC 568



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 110/486 (22%), Positives = 198/486 (40%), Gaps = 102/486 (20%)

Query: 17  ASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEI 76
           AS L +C   + + + +   +H H++  G      + N LI++Y K  +L  A+ +FD++
Sbjct: 226 ASILPVCAQSDDVINGVL--IHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQM 283

Query: 77  PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
              D+V+  ++IA                                 AY  N++   A+  
Sbjct: 284 EVRDLVSWNSIIA---------------------------------AYEQNNDPSTALRF 310

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           F+ M+   ++PD  T  S+ S  + + ++      +   + +        + NAL+++Y 
Sbjct: 311 FKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYA 370

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           K            M  A  VFD++P +D +SW T++TGY +N     A +  + M E   
Sbjct: 371 KL---------GYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRD 421

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
              N                     + T+ S+I A ++ G  + G ++HA L+    K +
Sbjct: 422 TIPN---------------------QGTWVSIIPAYSHVGALQQGMKIHAKLI----KNS 456

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
               + V   L+ LY KCG++ +A  +F ++P    V WNAI                  
Sbjct: 457 LYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAI------------------ 498

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
                        I+ L  +G GEE L+LF  M  E  K     F   +++C+  G ++ 
Sbjct: 499 -------------IASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDE 545

Query: 437 GRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAAL 494
           G++    +    G   SL     ++ +  R G +E A  +   MP   D+  W A+++A 
Sbjct: 546 GQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSAC 605

Query: 495 GQHGNG 500
             +GN 
Sbjct: 606 KIYGNA 611



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 134/276 (48%), Gaps = 15/276 (5%)

Query: 330 LYWKCGKVNEARDIFNQM----PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
           L+  C  VN  + +   +      +++V    +++ YV+ G I  ++S F+ + ++N+ S
Sbjct: 28  LFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFS 87

Query: 386 WTVMISGLAQNGYGEEGL----KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
           W  +IS   + G   E +    +LFS       +P  Y F   + +C    +L +G+++H
Sbjct: 88  WNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV---SLVDGKKVH 144

Query: 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGA 501
             +   G++  +    +L+ +Y+R GV++ A+ VF  MP  D  SWNAMI+   Q+GN A
Sbjct: 145 CCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAA 204

Query: 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG-PYGIPPGEDHYAR 560
            A+ +  +M  EG+  D IT  ++L  C  +  V  G      +H   +G+         
Sbjct: 205 GALGVLNRMKGEGVKMDTITVASILPVCAQSDDVING--VLIHLHVLKHGLDSDVFVSNA 262

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
            I++  + G+  +A+ V D +  +     W +++A 
Sbjct: 263 LINMYSKFGRLQDAQMVFDQMEVRDLVS-WNSIIAA 297



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 168/403 (41%), Gaps = 84/403 (20%)

Query: 21  QLCDPRNPITSSLARSVHAHMISSGFKPREHII-NRLIDIYCKSLKLVYARTLFDEIPQP 79
           QL D R      ++RS+   +I   +  ++ +I N L+++Y K   +  A T+FD++P+ 
Sbjct: 335 QLSDQR------ISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRK 388

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D ++  TL                                 +T Y+ N     AI+ +  
Sbjct: 389 DTISWNTL---------------------------------VTGYTQNGLASEAIDAYNM 415

Query: 140 MRR-DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
           M    D  P+  T+ S++ A +  V   +Q M++H  ++K+   L   V   LI +Y KC
Sbjct: 416 MEECRDTIPNQGTWVSIIPAYSH-VGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKC 474

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY-VKNDYLDAAREFLDGMSENVGV 257
                      +  A  +F E+P    + W  ++    +     +A + F D ++E    
Sbjct: 475 ---------GRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAE---- 521

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                              R++ D  T+ S++SAC++SGL   G++    +++ E    P
Sbjct: 522 -------------------RVKADHITFVSLLSACSHSGLVDEGQKCFD-IMQKEYGIKP 561

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA---YVSAGLIDEAKS 373
             SL     +V L  + G + +A ++   MP + D   W A+LSA   Y +A L   A  
Sbjct: 562 --SLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASD 619

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEG-LKLFSQMRLEGFK 415
               +   N + + V++S +  N    EG +K+ S  R  G +
Sbjct: 620 RLLEVDSEN-VGYYVLLSNIYANTEKWEGVIKVRSLARDRGLR 661


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 264/780 (33%), Positives = 404/780 (51%), Gaps = 113/780 (14%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y+S +Q C     IT      + +H +  GF     + N+LID Y K   +VYAR     
Sbjct: 80  YSSLIQQCIGIKSITD--ITKIQSHALKRGF--HHSLGNKLIDAYLKCGSVVYAR----- 130

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
                                     ++F++ P   R  V +N+MI +Y  N     AI+
Sbjct: 131 --------------------------KVFDEVP--HRHIVAWNSMIASYIRNGRSKEAID 162

Query: 136 LFRDMRRDDVKPDNFTFTSVLSA---LALIVEEEKQCMQMHCTVVKSGTGLFTS-VLNAL 191
           +++ M  D + PD FTF+SV  A   L L+ E ++     H   V  G G+    V +AL
Sbjct: 163 IYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQRA----HGQSVVLGVGVSNVFVGSAL 218

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           + +Y K            M  AR V D++  +D + +T ++ GY        +    DG 
Sbjct: 219 VDMYAKF---------GKMRDARLVSDQVVGKDVVLFTALIVGY--------SHHGEDG- 260

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
            E++ V  N    G            I+ +E+T +SV+  C N      G+ +H  ++  
Sbjct: 261 -ESLQVFRNMTKKG------------IEANEYTLSSVLVCCGNLEDLTSGRLIHGLIV-- 305

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
             K   E ++    +L+T+Y++CG                               L+D++
Sbjct: 306 --KAGLESAVASQTSLLTMYYRCG-------------------------------LVDDS 332

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
             +F+     N ++WT +I GL QNG  E  L  F QM      P  +  +  + +C+ L
Sbjct: 333 LKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSL 392

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
             LE G+Q+HA ++  G D     G ALI  Y +CG  E A  VFN +  VD VS N+MI
Sbjct: 393 AMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMI 452

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
            +  Q+G G  A++L+  M   G+ P+ +T+L VLSACN+AGL++EG   F +      I
Sbjct: 453 YSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNI 512

Query: 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611
              +DHYA  +DLL RAG+  EA+ +I+ +       IW  LL+ CRIHG++++  +   
Sbjct: 513 ELTKDHYACMVDLLGRAGRLKEAEMLINQVNI-SDVVIWRTLLSACRIHGDVEMAKRVMN 571

Query: 612 QLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFL 671
           ++  L P   GT+VLLSN+YA+ G W     ++  MR+  +KK P  SW++V+ ++H F+
Sbjct: 572 RVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIHTFM 631

Query: 672 VDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFG 731
             D +HP  + + + LE+L+ ++++LGYVPDT+FVL D++ ++K  +L  HSEKLAVAF 
Sbjct: 632 AGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEKKIRSLYYHSEKLAVAFA 691

Query: 732 LMKLP-GGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           L +      T+R+LKNLR+CGDCH   KF+SK+VGR+I+ RD KRFHHFR+G CSCGDYW
Sbjct: 692 LWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRFHHFRNGLCSCGDYW 751



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 108/212 (50%), Gaps = 18/212 (8%)

Query: 401 EGLKLFSQMRLEGFKPC-------DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL 453
           + L  FSQ  ++  K C          ++  I  C G+ ++ +  ++ +  +  G+  SL
Sbjct: 53  KSLSHFSQSNIKIRKLCITETIQSTKLYSSLIQQCIGIKSITDITKIQSHALKRGFHHSL 112

Query: 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE 513
             GN LI  Y +CG V  A  VF+ +P+   V+WN+MIA+  ++G    AI++Y++M+ +
Sbjct: 113 --GNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPD 170

Query: 514 GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP---YGIPPGEDHY-ARFIDLLCRAG 569
           GILPD  TF +V  A +  GLV EG+R     HG     G+        +  +D+  + G
Sbjct: 171 GILPDEFTFSSVFKAFSDLGLVHEGQR----AHGQSVVLGVGVSNVFVGSALVDMYAKFG 226

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
           K  +A+ V D +  K    ++ AL+ G   HG
Sbjct: 227 KMRDARLVSDQVVGK-DVVLFTALIVGYSHHG 257


>gi|302753382|ref|XP_002960115.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
 gi|300171054|gb|EFJ37654.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
          Length = 653

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 250/706 (35%), Positives = 384/706 (54%), Gaps = 68/706 (9%)

Query: 100 AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL 159
           AR++F++  +K R+   ++ ++  Y  N+    A+E++++M R+++  D +T +SVL+A 
Sbjct: 1   ARQVFDR--IKQRNAFSWSILVECYVQNAMYQEALEVYKEMVREEISIDAYTLSSVLAAC 58

Query: 160 ALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFD 218
             +++ EE + +Q     +  G      V  +LI ++ KC           +  A  VF 
Sbjct: 59  TKLLDVEEGRMVQRKAEEL--GFEKDVVVATSLIHLFAKC---------GCLEEAESVFR 107

Query: 219 EMPE-RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV---------- 267
            M   RD +S T M+  Y  +  L  ++     M     V+WNA+I+ Y           
Sbjct: 108 SMGAMRDIISVTAMIGAYCGS--LKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFS 165

Query: 268 --HRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
             HR   M  L    D +T++S++ ACA+      G+ +H   +R  A+           
Sbjct: 166 LFHR---MCTLGHTPDIYTFSSILGACASPKRLEDGRMLH---VRITARGF--------- 210

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
                                  +RD    N ++S Y   G ++ A+  F ++ ++ L +
Sbjct: 211 -----------------------DRDFAMQNNLISMYTRCGSLESARRYFYSIEKKELGA 247

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
           W  M++  AQ   G++ L L+  M LEGF P  + F+  + SCA LGAL  G+ +H    
Sbjct: 248 WNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECST 307

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIE 505
             G++  +  G AL+ MYA+CG +  A   F+ + N D VSW+AMIAA  QHG+   A+E
Sbjct: 308 SCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALE 367

Query: 506 LYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLL 565
           L   M  +GI  + +T  +VL AC+H G + EG  YF  +   +GI   E++   FIDLL
Sbjct: 368 LSHLMNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLL 427

Query: 566 CRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYV 625
            RAG   EA+ V+ ++PFK S      LL GC++HG++  G    +++  L P + G+YV
Sbjct: 428 GRAGWLKEAEHVLHTMPFKVSFVALVTLLGGCKVHGDVRRGKAFTKRIVALEPENPGSYV 487

Query: 626 LLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYK 685
           LL+NMYA  GRWDD A++R+ MR +GVK++ GCS IE  +K++ F V DT++P    +  
Sbjct: 488 LLNNMYAAAGRWDDVAKLRRYMRKKGVKRQTGCSSIEYRDKIYEFSVGDTSNPRNLEIRA 547

Query: 686 YLEQLVLEMR-KLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVL 744
            LE+L   M+ + GYVPDT+ V HD+  D+KE  L  HSEK+A+ FGL+  P G+T+R++
Sbjct: 548 ELERLYSRMKEEEGYVPDTRDVFHDVSDDKKEELLKFHSEKMAMGFGLITSPPGSTLRII 607

Query: 745 KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KNLR+C DCH   K  SK+ GR I+VRDG RFHHF  G CSCGDYW
Sbjct: 608 KNLRVCSDCHTVGKLASKITGRRIIVRDGTRFHHFEGGICSCGDYW 653



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 123/466 (26%), Positives = 201/466 (43%), Gaps = 82/466 (17%)

Query: 45  GFKPREHIINRLIDIYCKSLKLVYARTLFDEI-PQPDIVARTTLIAAYSASDNVKLAREM 103
           GF+    +   LI ++ K   L  A ++F  +    DI++ T +I AY  S  +K ++ +
Sbjct: 78  GFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTAMIGAYCGS--LKDSKSL 135

Query: 104 FNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIV 163
           F    + ++D V +NAMI AY+   +   A  LF  M      PD +TF+S+L A A   
Sbjct: 136 F--LTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPK 193

Query: 164 EEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER 223
             E   M +H  +   G     ++ N LIS+Y +C S         + +ARR F  + ++
Sbjct: 194 RLEDGRM-LHVRITARGFDRDFAMQNNLISMYTRCGS---------LESARRYFYSIEKK 243

Query: 224 DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEF 283
           +  +W TM+  Y +           D   + + +  N L+ G+              D F
Sbjct: 244 ELGAWNTMLAAYAQ----------FDKGKDALFLYKNMLLEGFTP------------DRF 281

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV--NNALVTLYWKCGKVNEAR 341
           T++SV+ +CA+ G  R GK +H      E   +  F   V    ALV +Y KCG + +A+
Sbjct: 282 TFSSVVDSCASLGALREGKFIH------ECSTSCGFEKDVILGTALVNMYAKCGSLADAK 335

Query: 342 DIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEE 401
             F+ +  +D+VSW+A                               MI+  AQ+G+ EE
Sbjct: 336 KSFDGISNKDVVSWSA-------------------------------MIAASAQHGHAEE 364

Query: 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALI 460
            L+L   M L+G    +   +  + +C+  G L  G      L    G +         I
Sbjct: 365 ALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFI 424

Query: 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ---HGNGARA 503
            +  R G ++ A  V +TMP    VS+ A++  LG    HG+  R 
Sbjct: 425 DLLGRAGWLKEAEHVLHTMPF--KVSFVALVTLLGGCKVHGDVRRG 468


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/637 (36%), Positives = 365/637 (57%), Gaps = 48/637 (7%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           Q+H   +KSG    T     ++     C +S  +  R L   A ++F++MP+R+  SW T
Sbjct: 41  QIHAVFIKSGQMRDTLAAAEILRF---CATSD-LHHRDL-DYAHKIFNQMPQRNCFSWNT 95

Query: 231 MMTGYVKNDY---LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTS 287
           ++ G+ ++D    L A   F + MS+                        ++ + FT+ S
Sbjct: 96  IIRGFSESDEDKALIAITLFYEMMSDEF----------------------VEPNRFTFPS 133

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF-NQ 346
           V+ ACA +G  + GKQ+H   L+       EF   V + LV +Y  CG + +AR +F   
Sbjct: 134 VLKACAKTGKIQEGKQIHGLALKY-GFGGDEF---VMSNLVRMYVMCGFMKDARVLFYKN 189

Query: 347 MPERDLVS-------------WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
           + E+D+V              WN ++  Y+  G    A+ LF+ MR+R+++SW  MISG 
Sbjct: 190 IIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGY 249

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL 453
           + NG+ ++ +++F +M+    +P        + + + LG+LE G  LH     SG     
Sbjct: 250 SLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDD 309

Query: 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE 513
             G+ALI MY++CG++E A  VF  +P  + ++W+AMI     HG    AI+ + +M + 
Sbjct: 310 VLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQA 369

Query: 514 GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE 573
           G+ P  + ++ +L+AC+H GLV+EGRRYF  M    G+ P  +HY   +DLL R+G   E
Sbjct: 370 GVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDE 429

Query: 574 AKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN 633
           A++ I ++P KP   IW+ALL  CR+ GN+++G + A  L  ++PH +G YV LSNMYA+
Sbjct: 430 AEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYAS 489

Query: 634 LGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLE 693
            G W + + +R  M+++ ++K+PGCS I++D  +H F+V+D +HP+A+ +   L ++  +
Sbjct: 490 QGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDK 549

Query: 694 MRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDC 753
           +R  GY P T  VL ++E + KE  L  HSEK+A AFGL+    G  +R++KNLRIC DC
Sbjct: 550 LRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDC 609

Query: 754 HNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           H++ K +SKV  R+I VRD KRFHHF+DG CSC DYW
Sbjct: 610 HSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 127/490 (25%), Positives = 215/490 (43%), Gaps = 98/490 (20%)

Query: 36  SVHAHMISSGFKPREHIINRLIDIYCKS-----LKLVYARTLFDEIPQPDIVARTTLIAA 90
            +HA  I SG + R+ +    I  +C +       L YA  +F+++PQ +  +  T+I  
Sbjct: 41  QIHAVFIKSG-QMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRG 99

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD-VKPDN 149
           +S SD  K                    A+I           AI LF +M  D+ V+P+ 
Sbjct: 100 FSESDEDK--------------------ALI-----------AITLFYEMMSDEFVEPNR 128

Query: 150 FTFTSVLSALALI--VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC---VSSPFV 204
           FTF SVL A A    ++E K   Q+H   +K G G    V++ L+ +YV C     +  +
Sbjct: 129 FTFPSVLKACAKTGKIQEGK---QIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVL 185

Query: 205 SSRSLMGAARRVFDEMPERDE--LSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL 262
             ++++     V  +  +RD   + W  M+ GY++     AAR   D M +   V+WN +
Sbjct: 186 FYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTM 245

Query: 263 ISGY-----------VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
           ISGY           V RE+K   +R      T  SV+ A +  G   LG+ +H Y   +
Sbjct: 246 ISGYSLNGFFKDAVEVFREMKKGDIRPNY--VTLVSVLPAISRLGSLELGEWLHLYAEDS 303

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
             +        + +AL+ +Y KCG + +A  +F ++P  ++++W+A              
Sbjct: 304 GIR----IDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSA-------------- 345

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
                            MI+G A +G   + +  F +MR  G +P D A+   +T+C+  
Sbjct: 346 -----------------MINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHG 388

Query: 432 GALENGRQLHAQLVH-SGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNA 489
           G +E GR+  +Q+V   G +  +     ++ +  R G+++ A      MP   D V W A
Sbjct: 389 GLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKA 448

Query: 490 MIAALGQHGN 499
           ++ A    GN
Sbjct: 449 LLGACRMQGN 458



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 164/375 (43%), Gaps = 56/375 (14%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF-D 74
           + S L+ C     I     + +H   +  GF   E +++ L+ +Y     +  AR LF  
Sbjct: 131 FPSVLKACAKTGKIQE--GKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYK 188

Query: 75  EIPQPDIVART-------------TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMI 121
            I + D+V  T              +I  Y    + K AR +F+K  ++ R  V +N MI
Sbjct: 189 NIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDK--MRQRSVVSWNTMI 246

Query: 122 TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGT 181
           + YS N     A+E+FR+M++ D++P+  T  SVL A++ +   E     +H     SG 
Sbjct: 247 SGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG-EWLHLYAEDSGI 305

Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
            +   + +ALI +Y KC          ++  A  VF+ +P  + ++W+ M+ G+      
Sbjct: 306 RIDDVLGSALIDMYSKC---------GIIEKAIHVFERLPRENVITWSAMINGF------ 350

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
                    +    G A +           KM    ++  +  Y ++++AC++ GL   G
Sbjct: 351 --------AIHGQAGDAIDCF--------CKMRQAGVRPSDVAYINLLTACSHGGLVEEG 394

Query: 302 KQVHAYLLRTEA-KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAIL 359
           ++  + ++  +  +P  E        +V L  + G ++EA +    MP + D V W A+L
Sbjct: 395 RRYFSQMVSVDGLEPRIEHY----GCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALL 450

Query: 360 SAYVSAGLIDEAKSL 374
            A    G ++  K +
Sbjct: 451 GACRMQGNVEMGKRV 465


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 259/816 (31%), Positives = 414/816 (50%), Gaps = 103/816 (12%)

Query: 26  RNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVART 85
           R+   S LA++ HA +I  GF+    ++ +L         + YAR +F  + +PD+    
Sbjct: 29  RSTSISHLAQT-HAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVF--- 84

Query: 86  TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-D 144
                                          +N ++  +S N + H+++ +F  +R+  D
Sbjct: 85  ------------------------------LFNVLMRGFSVNESPHSSLSVFAHLRKSTD 114

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           +KP++ T+   +SA A    +++    +H   V  G      + + ++ +Y K       
Sbjct: 115 LKPNSSTYAFAISA-ASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWR---- 169

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND-YLDAAREFLDGMSENVGVAWNALI 263
                +  AR+VFD MPE+D + W TM++GY KN+ Y+++ + F D ++E+        +
Sbjct: 170 -----VEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTL 224

Query: 264 SGYVHR--ELKMLMLRIQLD-----------EFTYTSVISACANSGLFRLGKQVHAYLLR 310
              +    EL+ L L +Q+            ++  T  IS  +  G  ++G    + L R
Sbjct: 225 LDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMG----SALFR 280

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM-------PERDLVSW-------- 355
              KP     +   NA++  Y   G+   +  +F ++           LVS         
Sbjct: 281 EFRKP----DIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLM 336

Query: 356 ---------------------NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
                                 A+ + Y     I+ A+ LF+   E++L SW  MISG  
Sbjct: 337 LIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYT 396

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
           QNG  E+ + LF +M+   F P        +++CA LGAL  G+ +H  +  + ++SS+ 
Sbjct: 397 QNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIY 456

Query: 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
              ALI MYA+CG +  A  +F+ M   + V+WN MI+  G HG G  A+ ++ +ML  G
Sbjct: 457 VSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSG 516

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
           I P  +TFL VL AC+HAGLVKEG   F +M   YG  P   HYA  +D+L RAG    A
Sbjct: 517 ITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRA 576

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL 634
              I+++  +P + +WE LL  CRIH + +L    +E+LF+L P + G +VLLSN+++  
Sbjct: 577 LQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSAD 636

Query: 635 GRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEM 694
             +  AA VR+  + R + K PG + IE+    HVF   D +HP+ + +Y+ LE+L  +M
Sbjct: 637 RNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKM 696

Query: 695 RKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCH 754
           R+ GY P+T+  LHD+E +++E  +  HSE+LA+AFGL+    G  +R++KNLR+C DCH
Sbjct: 697 REAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCH 756

Query: 755 NAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
              K +SK+  R IVVRD  RFHHF+DG CSCGDYW
Sbjct: 757 TVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792


>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 262/775 (33%), Positives = 404/775 (52%), Gaps = 110/775 (14%)

Query: 86   TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
            +LI+ +   D+V+ A  +FN   ++ RDT+ +N++ITA +HN     ++  F  MRR   
Sbjct: 391  SLISMFGNYDSVEEASRVFNN--MQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHP 448

Query: 146  KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVS 205
            K D  T +++L A     +  K    +H  + KSG      V N+L+S+Y +  SS    
Sbjct: 449  KTDYITISALLPACG-SAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSE--- 504

Query: 206  SRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265
                   A  VF  MP RD +SW +MM  +V++     A   L                 
Sbjct: 505  ------DAELVFHTMPARDLISWNSMMASHVEDGKYSHAILLL----------------- 541

Query: 266  YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL----------------- 308
                 ++ML  R  ++  T+T+ +SAC N  L +L K VHA++                 
Sbjct: 542  -----VEMLKTRKAMNYVTFTTALSACYN--LEKL-KIVHAFVIHFAVHHNLIIGNTLVT 593

Query: 309  ------LRTEA----KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS---- 354
                  L  EA    K  PE  +   NAL+  +      N     FN M    L+S    
Sbjct: 594  MYGKFGLMDEAQKVCKIMPERDVVTWNALIGGHADDKDPNATIQAFNLMRREGLLSNYIT 653

Query: 355  ------------------------------------WNAILSAYVSAGLIDEAKSLFEAM 378
                                                 +++++ Y   G ++ +  +F+ +
Sbjct: 654  IVNLLGTCMSPDYLLKHGMPIHAHIVVAGFELDTYVQSSLITMYAQCGDLNTSSYIFDVL 713

Query: 379  RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
              +N  +W  + S  A  G GEE LK  ++MR +G     ++F+ A+ +   L  L+ G+
Sbjct: 714  ANKNSSTWNAIFSANAHYGPGEEALKFIARMRNDGVDLDQFSFSVALATIGNLTVLDEGQ 773

Query: 439  QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP--NVDSV-SWNAMIAALG 495
            QLH+ ++  G++      NA + MY +CG ++    VF  +P   + S  SWN +I+AL 
Sbjct: 774  QLHSWIIKLGFELDEYVLNATMDMYGKCGEIDD---VFRILPIPKIRSKRSWNILISALA 830

Query: 496  QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
            +HG   +A E + +ML  G+ PD +TF+++LSAC+H GLV EG  YF +M   +G+P   
Sbjct: 831  RHGFFRQATEAFHEMLDLGLKPDHVTFVSLLSACSHGGLVDEGLVYFSSMTSEFGVPTAI 890

Query: 556  DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
            +H    IDLL R+G+ +EA+  ID +P  P+  +W +LLA C++HGN++LG +AA++LF+
Sbjct: 891  EHCVCIIDLLGRSGRLAEAEGFIDKMPVPPNEFVWRSLLAACKVHGNLELGRKAADRLFE 950

Query: 616  LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
            L       YVL SN+ A+  RW D   VRK M  + +KK+P CSWI++ NKV  F + D 
Sbjct: 951  LNSSDDSAYVLYSNVCASTQRWGDVENVRKQMESQSLKKKPACSWIKLKNKVMTFGMGDQ 1010

Query: 676  AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKL 735
             HP++  +Y  LE+L    R+ G++PDT + L D + +QKE+ L  HSE++A+AFGL+  
Sbjct: 1011 FHPQSAQIYAKLEELRKMTREEGHMPDTSYALQDTDEEQKEHNLWNHSERIALAFGLINS 1070

Query: 736  PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
              G+ +R+ KNLR+CGDCH+ FK +SK+VGR+IVVRD  RFHHF  GKCSC DYW
Sbjct: 1071 AEGSPLRIFKNLRVCGDCHSVFKLVSKIVGRKIVVRDSYRFHHFHGGKCSCSDYW 1125



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 158/685 (23%), Positives = 271/685 (39%), Gaps = 147/685 (21%)

Query: 17  ASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEI 76
           AS +  CD    +T   AR +H +++  G      +   L+  Y     +  A  LF+EI
Sbjct: 252 ASMVTACDRSGCMTEG-ARQIHGYVVKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEI 310

Query: 77  PQPDIVARTTLIAAYSASDNVKLAREMFN------------------------------- 105
            +P+IV+ T+L+  Y+ + + K    ++                                
Sbjct: 311 EEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHNGLICTGNTMATVIRTCGMFGDKTMGY 370

Query: 106 -------KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV------------- 145
                  K+ L        N++I+ + +  +   A  +F +M+  D              
Sbjct: 371 QILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHN 430

Query: 146 ------------------KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSV 187
                             K D  T +++L A     +  K    +H  + KSG      V
Sbjct: 431 GRFEESLGHFFWMRRTHPKTDYITISALLPACG-SAQHLKWGRGLHGLITKSGLESNVCV 489

Query: 188 LNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREF 247
            N+L+S+Y +  SS           A  VF  MP RD +SW +MM  +V++     A   
Sbjct: 490 CNSLLSMYAQAGSSE---------DAELVFHTMPARDLISWNSMMASHVEDGKYSHAILL 540

Query: 248 LDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY 307
           L                      ++ML  R  ++  T+T+ +SAC N  L +L K VHA+
Sbjct: 541 L----------------------VEMLKTRKAMNYVTFTTALSACYN--LEKL-KIVHAF 575

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367
           ++          +L + N LVT+Y K G ++EA+ +   MPERD+V+WNA++  +     
Sbjct: 576 VIHFAV----HHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDVVTWNALIGGHADDKD 631

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
            +     F  MR   LLS  + I  L       + L                        
Sbjct: 632 PNATIQAFNLMRREGLLSNYITIVNLLGTCMSPDYL------------------------ 667

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
                 L++G  +HA +V +G++      ++LITMYA+CG +  ++ +F+ + N +S +W
Sbjct: 668 ------LKHGMPIHAHIVVAGFELDTYVQSSLITMYAQCGDLNTSSYIFDVLANKNSSTW 721

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
           NA+ +A   +G G  A++   +M  +G+  D+ +F   L+   +  ++ EG++   +   
Sbjct: 722 NAIFSANAHYGPGEEALKFIARMRNDGVDLDQFSFSVALATIGNLTVLDEGQQ-LHSWII 780

Query: 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP--SAPIWEALLAGCRIHGNIDL 605
             G    E      +D+    GK  E  DV   LP     S   W  L++    HG    
Sbjct: 781 KLGFELDEYVLNATMDMY---GKCGEIDDVFRILPIPKIRSKRSWNILISALARHGFFRQ 837

Query: 606 GIQAAEQLFQ--LMPHHAGTYVLLS 628
             +A  ++    L P H     LLS
Sbjct: 838 ATEAFHEMLDLGLKPDHVTFVSLLS 862



 Score =  149 bits (377), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 140/563 (24%), Positives = 245/563 (43%), Gaps = 88/563 (15%)

Query: 75  EIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAI 134
           ++ Q +     TL+  YS   ++K A+ +F+K  +  R+   +N MI+ +      H A+
Sbjct: 176 DVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDK--MYDRNDASWNNMISGFVRVGWYHKAM 233

Query: 135 ELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM-----QMHCTVVKSGTGLFTSVLN 189
           + F  M  + V P ++   S+++A      +   CM     Q+H  VVK G         
Sbjct: 234 QFFCHMFENGVTPSSYVIASMVTAC-----DRSGCMTEGARQIHGYVVKCGL-------- 280

Query: 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD 249
            + +V+V      F  +   +  A ++F+E+ E + +SWT++M  Y  N +    +E L+
Sbjct: 281 -MSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGH---TKEVLN 336

Query: 250 GMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
                            ++R L+   L    +  T  +VI  C   G   +G Q+   ++
Sbjct: 337 -----------------IYRHLRHNGLICTGN--TMATVIRTCGMFGDKTMGYQILGDVI 377

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLID 369
           ++    +   S+ V N+L++++   G  +                             ++
Sbjct: 378 KSGLDTS---SVSVANSLISMF---GNYDS----------------------------VE 403

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
           EA  +F  M+ER+ +SW  +I+  A NG  EE L  F  MR    K      +  + +C 
Sbjct: 404 EASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITISALLPACG 463

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
               L+ GR LH  +  SG +S++   N+L++MYA+ G  E A  VF+TMP  D +SWN+
Sbjct: 464 SAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMPARDLISWNS 523

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY 549
           M+A+  + G  + AI L  +MLK     + +TF T LSAC +   +K    +       +
Sbjct: 524 MMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSACYNLEKLKIVHAFVIHFAVHH 583

Query: 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609
            +  G       + +  + G   EA+ V   +P +     W AL+ G   H + D    A
Sbjct: 584 NLIIGNT----LVTMYGKFGLMDEAQKVCKIMP-ERDVVTWNALIGG---HAD-DKDPNA 634

Query: 610 AEQLFQLMPHHA--GTYVLLSNM 630
             Q F LM        Y+ + N+
Sbjct: 635 TIQAFNLMRREGLLSNYITIVNL 657



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 1/158 (0%)

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           G+ LHA  V      +    N L+ MY++ G ++ A  VF+ M + +  SWN MI+   +
Sbjct: 166 GKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGFVR 225

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
            G   +A++ +  M + G+ P      ++++AC+ +G + EG R         G+     
Sbjct: 226 VGWYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQIHGYVVKCGLMSNVF 285

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
                +      G  SEA  + + +  +P+   W +L+
Sbjct: 286 VGTSLLHFYGTHGSVSEANKLFEEIE-EPNIVSWTSLM 322


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 248/706 (35%), Positives = 372/706 (52%), Gaps = 69/706 (9%)

Query: 85   TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
            + LI AYS    V  AR +F+   +  +D V + AM++ YS N      +++F  MR   
Sbjct: 570  SALIDAYSMCGVVSDARRVFDG--IVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAV 627

Query: 145  VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
             K + F  TSVL A A+ +        +H   VK+       V  AL+ +Y KC +    
Sbjct: 628  SKLNPFALTSVLRA-AVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGN---- 682

Query: 205  SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                 +  AR  F+ +   D + W+ M++ Y + +  + A E                  
Sbjct: 683  -----IEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELF---------------- 721

Query: 265  GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
                  ++M+   +  +EF+ +SV+ ACAN  L  LGKQ+H + ++       E  L V 
Sbjct: 722  ------IRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGH----ESELFVG 771

Query: 325  NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
            NAL+ LY KC  +  + +I                               F ++R+ N +
Sbjct: 772  NALIDLYAKCSDMESSLEI-------------------------------FSSLRDVNEV 800

Query: 385  SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
            SW  +I G +++G+GE  L +F +MR          ++  + +CA   ++ +  Q+H  +
Sbjct: 801  SWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLI 860

Query: 445  VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
              S ++S     N+LI  YA+CG +  A  +F T+   D VSWNA+I+    HG  A A 
Sbjct: 861  EKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQ 920

Query: 505  ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
            EL++ M K  I  + ITF+ +LS C   GLV +G   F++M   +GI P  +HY   + L
Sbjct: 921  ELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRL 980

Query: 565  LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624
            L RAG+ ++A + I  +P  PSA +W ALL+ C +H N++LG  +AE++ ++ P    TY
Sbjct: 981  LGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGRFSAEKVLEIEPQDETTY 1040

Query: 625  VLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVY 684
            VLLSNMY+  G  D  A  RK MR+ GV+KEPG SW+E+  +VH F V    HP  + + 
Sbjct: 1041 VLLSNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWVEIKGEVHAFSVGSEDHPCMRVIN 1100

Query: 685  KYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVL 744
              LE L L+  + GYVPDT  VLHD+E +QK   L  HSE+LA+A+GL+  P G  +R++
Sbjct: 1101 AMLEWLNLKAIREGYVPDTDEVLHDLEEEQKVRMLWVHSERLALAYGLVMTPPGHPIRIM 1160

Query: 745  KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            KNLR C DCH  FK +SK+V +EI+VRD  RFHHF +G CSCGDYW
Sbjct: 1161 KNLRSCLDCHAIFKVISKIVKQEIIVRDINRFHHFEEGTCSCGDYW 1206



 Score =  162 bits (409), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 146/614 (23%), Positives = 260/614 (42%), Gaps = 130/614 (21%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHII--NRLIDIYCKSLKLVYARTLF 73
           YA  LQ C  R    +   R+VH H++ SG   R  +   N L+++Y K      A  +F
Sbjct: 431 YARLLQGCVARG--DARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVF 488

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
           D +P+ ++V+  TL+  ++        R  F +                          A
Sbjct: 489 DGLPERNMVSFVTLVQGHAL-------RGEFEE--------------------------A 515

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
             LF+ +R +  + + F  T+VL  L + ++       +H    K G      V +ALI 
Sbjct: 516 SALFQRLRWEGHEVNQFVLTTVLK-LVVAMDTLGLAWGVHACACKLGHDRNAFVGSALID 574

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
            Y  C          ++  ARRVFD +  +D ++WT M++ Y +ND  +   +    M  
Sbjct: 575 AYSMC---------GVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRV 625

Query: 254 NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
            V                       +L+ F  TSV+ A        LGK +HA  ++T  
Sbjct: 626 AVS----------------------KLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLY 663

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
                    V  AL+ +Y KCG + +AR  F  +   D++ W                  
Sbjct: 664 DTERH----VYGALLDMYAKCGNIEDARLAFEMVTNDDVILW------------------ 701

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
                        ++MIS  AQ    E+  +LF +M      P +++ +  + +CA +  
Sbjct: 702 -------------SLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPL 748

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
           L+ G+Q+H   +  G++S L  GNALI +YA+C  +E++  +F+++ +V+ VSWN +I  
Sbjct: 749 LDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVG 808

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC------NHAG----LVKEGRRYFE 543
             + G G  A+ ++ +M    +   ++T+ +VL AC      NH G    L+++     +
Sbjct: 809 YSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSD 868

Query: 544 TMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNI 603
           T+                ID   + G   +A+++ ++L  +     W A+++G  +HG  
Sbjct: 869 TIVS-----------NSLIDSYAKCGCIRDAREIFETLK-ECDLVSWNAIISGYAVHGQA 916

Query: 604 DLGIQAAEQLFQLM 617
            +    A++LF +M
Sbjct: 917 AM----AQELFDMM 926



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/391 (27%), Positives = 176/391 (45%), Gaps = 78/391 (19%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L + +HA  + + +    H+   L+D+Y K   +  AR  F+ +   D++          
Sbjct: 650 LGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVI---------- 699

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                   ++ MI+ Y+  +    A ELF  M R  V P+ F+ 
Sbjct: 700 -----------------------LWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSL 736

Query: 153 TSVLSALA--LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           +SVL A A   +++  KQ   +H   +K G      V NALI +Y KC         S M
Sbjct: 737 SSVLQACANMPLLDLGKQ---IHNHAIKIGHESELFVGNALIDLYAKC---------SDM 784

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
            ++  +F  + + +E+SW T++ GY K+ + +AA                      V RE
Sbjct: 785 ESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALS--------------------VFRE 824

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
           ++     +   + TY+SV+ ACA++       QVH  +     K T      V+N+L+  
Sbjct: 825 MRAA--SVPSTQVTYSSVLRACASTASINHVGQVHCLI----EKSTFNSDTIVSNSLIDS 878

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL----LSW 386
           Y KCG + +AR+IF  + E DLVSWNAI+S Y   G    A+ LF+ M + ++    +++
Sbjct: 879 YAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITF 938

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLE-GFKP 416
             ++S     G   +GL LF  MRL+ G +P
Sbjct: 939 VALLSVCGSTGLVSQGLSLFDSMRLDHGIEP 969



 Score =  116 bits (290), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 104/452 (23%), Positives = 192/452 (42%), Gaps = 93/452 (20%)

Query: 98  KLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP----DNFTFT 153
           +L    FN+ P + RD                 +AA++   D       P    D++ + 
Sbjct: 387 RLHSAFFNQAPPRRRDLA--------------ANAALQWLEDELTSLAFPWPGVDSYAYA 432

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSG----TGLFTSVLNALISVYVKCVSSPFVSSRSL 209
            +L    +   + +    +H  VV+SG      LF +  N L+++Y K    PF      
Sbjct: 433 RLLQG-CVARGDARGGRAVHGHVVRSGGLARLDLFCA--NVLLNMYTKV--GPF------ 481

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
            G+A RVFD +PER+ +S+ T++ G+      + A      +       W     G+   
Sbjct: 482 -GSAHRVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLR------WE----GH--- 527

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
                    ++++F  T+V+          L   VHA                       
Sbjct: 528 ---------EVNQFVLTTVLKLVVAMDTLGLAWGVHA----------------------- 555

Query: 330 LYWKCG-KVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV 388
               C  K+   R+ F           +A++ AY   G++ +A+ +F+ +  ++ ++WT 
Sbjct: 556 ----CACKLGHDRNAFVG---------SALIDAYSMCGVVSDARRVFDGIVGKDAVAWTA 602

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG 448
           M+S  ++N   E  L++FS+MR+   K   +A    + +   L ++  G+ +HA  V + 
Sbjct: 603 MVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTL 662

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
           YD+      AL+ MYA+CG +E A   F  + N D + W+ MI+   Q     +A EL+ 
Sbjct: 663 YDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFI 722

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
           +M++  + P+  +  +VL AC +  L+  G++
Sbjct: 723 RMMRSSVSPNEFSLSSVLQACANMPLLDLGKQ 754



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 141/348 (40%), Gaps = 71/348 (20%)

Query: 17   ASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEI 76
            +S LQ C   N     L + +H H I  G +    + N LID+Y K   +  +  +F  +
Sbjct: 737  SSVLQAC--ANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSL 794

Query: 77   PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
               + V+  T+I  YS S                                   G AA+ +
Sbjct: 795  RDVNEVSWNTIIVGYSKS---------------------------------GFGEAALSV 821

Query: 137  FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
            FR+MR   V     T++SVL A A          Q+HC + KS     T V N+LI  Y 
Sbjct: 822  FREMRAASVPSTQVTYSSVLRACA-STASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYA 880

Query: 197  KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
            KC           +  AR +F+ + E D +SW  +++GY  +     A+E  D MS+N  
Sbjct: 881  KC---------GCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKN-- 929

Query: 257  VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
                                 I+ ++ T+ +++S C ++GL   G  +    +R +    
Sbjct: 930  --------------------SIKANDITFVALLSVCGSTGLVSQGLSLFDS-MRLDHGIE 968

Query: 317  PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSAYV 363
            P  S+     +V L  + G++N+A +    +P     + W A+LS+ +
Sbjct: 969  P--SMEHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCI 1014



 Score = 47.0 bits (110), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 7/149 (4%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y+S L+ C     I       VH  +  S F     + N LID Y K   +  AR +F+ 
Sbjct: 837 YSSVLRACASTASINH--VGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFET 894

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFN---KTPLKMRDTVFYNAMITAYSHNSNGHA 132
           + + D+V+   +I+ Y+      +A+E+F+   K  +K  D  F  A+++          
Sbjct: 895 LKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFV-ALLSVCGSTGLVSQ 953

Query: 133 AIELFRDMRRD-DVKPDNFTFTSVLSALA 160
            + LF  MR D  ++P    +T ++  L 
Sbjct: 954 GLSLFDSMRLDHGIEPSMEHYTCIVRLLG 982


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/592 (40%), Positives = 331/592 (55%), Gaps = 50/592 (8%)

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY--VHREL 271
           R + D   ++D    T ++  Y +   +D A +  D   E     WNAL      V    
Sbjct: 102 RCLVDSGFDQDPFLATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGK 161

Query: 272 KMLMLRIQL-------DEFTYTSVISACANSGL----FRLGKQVHAYLLRTEAKPTPEFS 320
           ++L L IQ+       D FTYT V+ AC  S L     R GK++HA++LR          
Sbjct: 162 ELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILR---------- 211

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
                                       E ++     +L  Y   G +  A S+F AM  
Sbjct: 212 -------------------------HGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPT 246

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK--PCDYAFAGAITSCAGLGALENGR 438
           +N +SW+ MI+  A+N    + L+LF  M  E     P        + +CAGL ALE G+
Sbjct: 247 KNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGK 306

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
            +H  ++    DS L   NALITMY RCG V     VF+ M   D VSWN++I+  G HG
Sbjct: 307 LIHGYILRRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHG 366

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
            G +AI+++E M+ +G+ P  I+F+TVL AC+HAGLV+EG+  FE+M   Y I PG +HY
Sbjct: 367 FGKKAIQIFENMIHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHY 426

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
           A  +DLL RA +  EA  +I+ + F+P   +W +LL  CRIH N++L  +A+  LF+L P
Sbjct: 427 ACMVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTVLFELEP 486

Query: 619 HHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHP 678
            +AG YVLL+++YA    W +A  V KL+  RG++K PGCSWIEV  KV+ F+  D  +P
Sbjct: 487 RNAGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNP 546

Query: 679 EAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGG 738
           + + ++  L +L  EM+  GYVP T  VL+D++ ++KE  +  HSEKLAVAFGL+    G
Sbjct: 547 QIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKLAVAFGLINTAKG 606

Query: 739 ATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            T+R+ KNLR+C DCH   KF+SK   REI+VRD  RFHHFRDG CSCGDYW
Sbjct: 607 ETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFRDGVCSCGDYW 658



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 128/551 (23%), Positives = 219/551 (39%), Gaps = 112/551 (20%)

Query: 40  HMISSGFKPREHIINRLIDIYCKSLKLVYA----RTLFDEIPQPDIVARTTLIAAYSASD 95
           H++     P +     LI    +   L Y     R L D     D    T LI  Y    
Sbjct: 68  HLLCCEPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELG 127

Query: 96  NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV 155
           ++  A ++F++T  + R    +NA+  A +   +G   ++L+  M       D FT+T V
Sbjct: 128 SIDRALKVFDET--RERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYV 185

Query: 156 LSALALIVEEEKQC-----MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           L   A +V E   C      ++H  +++ G      V+  L+ VY K  S  + +S    
Sbjct: 186 LK--ACVVSELSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANS---- 239

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
                VF  MP ++ +SW+ M+  + KN+    A E    M   +  A N++        
Sbjct: 240 -----VFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLM---MFEACNSVP------- 284

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
                     +  T  +++ ACA       GK +H Y+LR +        LPV NAL+T+
Sbjct: 285 ----------NSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDSI----LPVLNALITM 330

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y +CG+V   + +F+ M +RD+VSWN+++S Y                            
Sbjct: 331 YGRCGEVLMGQRVFDNMKKRDVVSWNSLISIY---------------------------- 362

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
                +G+G++ +++F  M  +G  P   +F   + +C+  G +E G+ L        ++
Sbjct: 363 ---GMHGFGKKAIQIFENMIHQGVSPSYISFITVLGACSHAGLVEEGKIL--------FE 411

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
           S LS                     +   P ++   +  M+  LG+      AI+L E M
Sbjct: 412 SMLSK--------------------YRIHPGME--HYACMVDLLGRANRLGEAIKLIEDM 449

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
             E   P    + ++L +C     V+   R    +      P    +Y    D+   A  
Sbjct: 450 HFE---PGPTVWGSLLGSCRIHCNVELAERASTVLFELE--PRNAGNYVLLADIYAEAKL 504

Query: 571 FSEAKDVIDSL 581
           +SEAK V+  L
Sbjct: 505 WSEAKSVMKLL 515



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 92/422 (21%), Positives = 177/422 (41%), Gaps = 85/422 (20%)

Query: 8   YIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLV 67
           Y   L     S+L +C  R        + +HAH++  G++   H++  L+D+Y K   + 
Sbjct: 182 YTYVLKACVVSELSVCPLRK------GKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVS 235

Query: 68  YARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHN 127
           YA ++F  +P  + V+ + +IA ++            N+ P+K                 
Sbjct: 236 YANSVFCAMPTKNFVSWSAMIACFAK-----------NEMPMK----------------- 267

Query: 128 SNGHAAIELFRDMRRD--DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFT 185
                A+ELF+ M  +  +  P++ T  ++L A A +   E Q   +H  +++       
Sbjct: 268 -----ALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALE-QGKLIHGYILRRQLDSIL 321

Query: 186 SVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245
            VLNALI++Y +C          LMG  +RVFD M +RD +SW ++++ Y  + +   A 
Sbjct: 322 PVLNALITMYGRC-------GEVLMG--QRVFDNMKKRDVVSWNSLISIYGMHGFGKKAI 372

Query: 246 EFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
           +  + M    GV+       Y+                ++ +V+ AC+++GL   GK + 
Sbjct: 373 QIFENMIHQ-GVS-----PSYI----------------SFITVLGACSHAGLVEEGKILF 410

Query: 306 AYLL-RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA-- 361
             +L +    P  E        +V L  +  ++ EA  +   M  E     W ++L +  
Sbjct: 411 ESMLSKYRIHPGMEHY----ACMVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSLLGSCR 466

Query: 362 -YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG---LKLFSQMRLEGFKPC 417
            + +  L + A ++   +  RN  ++ ++    A+     E    +KL     L+    C
Sbjct: 467 IHCNVELAERASTVLFELEPRNAGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQKLPGC 526

Query: 418 DY 419
            +
Sbjct: 527 SW 528



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 87/205 (42%), Gaps = 8/205 (3%)

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P    F   I SCA   +L  G  +H  LV SG+D        LI MY   G ++ A  V
Sbjct: 76  PTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKV 135

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           F+         WNA+  AL   G+G   ++LY QM   G   DR T+  VL AC  + L 
Sbjct: 136 FDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELS 195

Query: 536 KEGRRYFETMHGP---YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592
               R  + +H     +G           +D+  + G  S A  V  ++P K     W A
Sbjct: 196 VCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVS-WSA 254

Query: 593 LLAGCRIHGNIDLGIQAAEQLFQLM 617
           ++A C     + +    A +LFQLM
Sbjct: 255 MIA-CFAKNEMPM---KALELFQLM 275


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 247/649 (38%), Positives = 359/649 (55%), Gaps = 43/649 (6%)

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           P + TF  +L     +     Q  Q+H  VV  G    TS+L  LI  Y+ C +  F   
Sbjct: 53  PSHSTFVQLLKKRPSLT----QIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSF--- 105

Query: 207 RSLMGAARRVFDEMPE-RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265
                 AR VFD+ P     + W  M+  Y K     +++E L                 
Sbjct: 106 ------ARIVFDQFPSLPPTIIWNLMIQAYSKTP---SSQESL----------------- 139

Query: 266 YVHRELKMLMLRIQLDEFTYTSVISACANSGLFR-LGKQVHAYLLRTEAKPTPEFSLPVN 324
           Y+  ++         D++T+T V +AC+     R  G+ VH  ++    K   E  + V 
Sbjct: 140 YLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVV----KDGYESDIFVG 195

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
           N+LV +Y    ++ +A+ +F++MP+RD+++W +++  Y   G +  A+ LF+ M  RN +
Sbjct: 196 NSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDV 255

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRL-EGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
           SW VM++G   + +  E L+ F+ M   +  KP +      +++CA LGAL+ G+ +H  
Sbjct: 256 SWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVY 315

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
           +  +    S +   ALI MYA+CG ++ A  VF+ +   D ++W +MI+ L  HG GA  
Sbjct: 316 IDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAEC 375

Query: 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563
           +  + +ML EG  PD IT L VL+ C+H+GLV+EG   F  M   +GI P  +HY   ID
Sbjct: 376 LWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLID 435

Query: 564 LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP-HHAG 622
           LL RAG+   A + I S+P +P    W ALL+ CRIHG++DLG +    + +L P  H G
Sbjct: 436 LLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAELCPGSHGG 495

Query: 623 TYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQA 682
            YVLLSN+YA++G+W+   +VRK M  RG +  PGCSWIE+D  VH FL  D  HP    
Sbjct: 496 GYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGCSWIEIDGVVHEFLAADKLHPRISE 555

Query: 683 VYKYLEQLVLEMR-KLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATV 741
           + K L +++  +  + GYVP TK VL D+  + KE A+S HSEKLAVAFGL+    G T+
Sbjct: 556 INKKLNEVLRRISIEGGYVPSTKQVLFDLNEEDKEQAVSWHSEKLAVAFGLLSTQEG-TI 614

Query: 742 RVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           R+ KNLR C DCH+A K +S V  REIVVRD  RFH FR G CSC DYW
Sbjct: 615 RITKNLRTCEDCHSAMKTISLVFNREIVVRDRSRFHTFRYGNCSCTDYW 663



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 140/506 (27%), Positives = 220/506 (43%), Gaps = 95/506 (18%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           +++ +QL   R  +T    + +HA +++ G      ++  LI  Y     L +AR +FD+
Sbjct: 55  HSTFVQLLKKRPSLTQ--IKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQ 112

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
            P                                 +  T+ +N MI AYS   +   ++ 
Sbjct: 113 FP--------------------------------SLPPTIIWNLMIQAYSKTPSSQESLY 140

Query: 136 LFRDM--RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
           LF  M         D +TFT V +A +           +H  VVK G      V N+L++
Sbjct: 141 LFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVN 200

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
           +Y         S  S M  A+RVFDEMP+RD ++WT+++ GY     L  ARE  D M  
Sbjct: 201 MY---------SIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPG 251

Query: 254 NVGVAWNALISGYVHRELKMLMLR----------IQLDEFTYTSVISACANSGLFRLGKQ 303
              V+W  +++GYV        L+          ++ +E    S++SACA+ G    GK 
Sbjct: 252 RNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKW 311

Query: 304 VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV 363
           +H Y+ +         S  ++ AL+ +Y KCG+++ AR +F+ + +RDL++W        
Sbjct: 312 IHVYIDKNRIL----LSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTW-------- 359

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
                                  T MISGL+ +G G E L  FS+M  EGFKP D    G
Sbjct: 360 -----------------------TSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLG 396

Query: 424 AITSCAGLGALENGRQL-HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-N 481
            +  C+  G +E G  + H  +   G    L     LI +  R G +E+A     +MP  
Sbjct: 397 VLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPME 456

Query: 482 VDSVSWNAMIAALGQHGN---GARAI 504
            D V+W A+++A   HG+   G R I
Sbjct: 457 PDVVAWRALLSACRIHGDVDLGERII 482



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 168/358 (46%), Gaps = 41/358 (11%)

Query: 26  RNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVART 85
           R+P       +VH  ++  G++    + N L+++Y    ++V A+ +FDE+PQ D++  T
Sbjct: 168 RHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWT 227

Query: 86  TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMR-RDD 144
           +++  Y+    +  ARE+F+  P   R+ V +  M+  Y  +   + A++ F DM   D+
Sbjct: 228 SVVKGYAMRGELVRARELFDMMP--GRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDE 285

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           VKP+     S+LSA A +   + Q   +H  + K+   L +++  ALI +Y KC      
Sbjct: 286 VKPNEAVLVSILSACAHLGALD-QGKWIHVYIDKNRILLSSNISTALIDMYAKC------ 338

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                +  ARRVFD + +RD L+WT+M++G   +       E L   SE           
Sbjct: 339 ---GRIDCARRVFDGLHKRDLLTWTSMISGLSMHGL---GAECLWTFSE----------- 381

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV-HAYLLRTEAKPTPEFSLPV 323
                   ML    + D+ T   V++ C++SGL   G  + H  +      P  E     
Sbjct: 382 --------MLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEH---- 429

Query: 324 NNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
              L+ L  + G++  A +    MP E D+V+W A+LSA    G +D  + +   + E
Sbjct: 430 YGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAE 487


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/567 (40%), Positives = 332/567 (58%), Gaps = 48/567 (8%)

Query: 235 YVKNDYLDAAREFLDGMSENVGVAWNALISGY-----------VHRELKMLMLRIQLDEF 283
           YV+   L+ A+E  DGMS+    +W+ ++ GY           + REL  L     LD++
Sbjct: 95  YVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFREL--LRSGAPLDDY 152

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
           +   VI AC +    + G+ +H   L    K   ++   V   LV +Y +C  V +A  I
Sbjct: 153 SAPVVIRACRDLKDLKCGRLIHCITL----KCGLDYGHFVCATLVDMYARCKVVEDAHQI 208

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
           F +                               M +R+L +WTVMI  LA++G   E L
Sbjct: 209 FVK-------------------------------MWKRDLATWTVMIGALAESGVPVESL 237

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
             F +MR +G  P   A    + +CA LGA+   + +HA +  +GY   +  G A+I MY
Sbjct: 238 VFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMY 297

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
           A+CG VE+A  +F+ M   + ++W+AMIAA G HG G +A+EL+  ML+ GILP+RITF+
Sbjct: 298 AKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFV 357

Query: 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF 583
           ++L AC+HAGL++EG+R+F +M   YG+ P   HY   +DLL RAG+  EA ++I+ +P 
Sbjct: 358 SLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPV 417

Query: 584 KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARV 643
           +    +W ALL  CRIH ++DL  + A  L +L     G YVLLSN+YAN G+W+D A+ 
Sbjct: 418 EKDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWEDMAKT 477

Query: 644 RKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDT 703
           R LM   G++K PG +WIEV  K++ F V D  HP +  +YK L++L  ++   GY PDT
Sbjct: 478 RDLMTKGGLRKIPGRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKLEVAGYHPDT 537

Query: 704 KFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKV 763
             VL+D++ + K+  L +HSEKLA+AFGL+ LP G  +R+ KNLR+CGDCH   KF+S +
Sbjct: 538 NDVLYDVDEEVKQGLLYSHSEKLAIAFGLLVLPQGHPIRITKNLRVCGDCHTFCKFVSLI 597

Query: 764 VGREIVVRDGKRFHHFRDGKCSCGDYW 790
             + I+VRD KRFHHF++G CSC DYW
Sbjct: 598 EQKTIIVRDAKRFHHFKEGVCSCRDYW 624



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 138/288 (47%), Gaps = 10/288 (3%)

Query: 334 CGKVNEARDIFNQMPE----RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           C  + + R +  Q+      R+L   N +L  YV  G +++A+ LF+ M +R+  SW+V+
Sbjct: 63  CRNLFQVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVI 122

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           + G A+ G       +F ++   G    DY+    I +C  L  L+ GR +H   +  G 
Sbjct: 123 VGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGL 182

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
           D        L+ MYARC VVE A+ +F  M   D  +W  MI AL + G    ++  +++
Sbjct: 183 DYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDR 242

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
           M  +GI+PD++  +TV+ AC   G + + +     ++G  G           ID+  + G
Sbjct: 243 MRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGT-GYSLDVILGTAMIDMYAKCG 301

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
               A+ + D +  + +   W A++A    HG    G +A E LF +M
Sbjct: 302 SVESARWIFDRMQVR-NVITWSAMIAAYGYHGQ---GEKALE-LFPMM 344



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 95/438 (21%), Positives = 183/438 (41%), Gaps = 81/438 (18%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           ++     L+  Y     ++ A+E+F+   +  R    ++ ++  Y+   N  +   +FR+
Sbjct: 84  NLAVANKLLYMYVERGALEDAQELFDG--MSKRHPYSWSVIVGGYAKVGNFFSCFWMFRE 141

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQM-HCTVVKSGTGLFTSVLNALISVYVKC 198
           + R     D+++   V+ A   +  ++ +C ++ HC  +K G      V   L+ +Y +C
Sbjct: 142 LLRSGAPLDDYSAPVVIRACRDL--KDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARC 199

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
                     ++  A ++F +M +RD  +WT M+    ++     +  F D M  N G+ 
Sbjct: 200 ---------KVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRM-RNQGIV 249

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                                 D+    +V+ ACA  G     K +HAY+  T       
Sbjct: 250 ---------------------PDKVALVTVVYACAKLGAMNKAKAIHAYINGTG------ 282

Query: 319 FSLPV--NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
           +SL V    A++ +Y KCG V  AR IF++M  R++++W+A+++AY              
Sbjct: 283 YSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAY-------------- 328

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
                              +G GE+ L+LF  M   G  P    F   + +C+  G +E 
Sbjct: 329 -----------------GYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEE 371

Query: 437 GRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAAL 494
           G++  + +    G    +     ++ +  R G ++ A  +   MP   D V W A++ A 
Sbjct: 372 GQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGAC 431

Query: 495 GQHGNGARAIELYEQMLK 512
             H    R ++L E++ +
Sbjct: 432 RIH----RHLDLAERVAR 445



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 132/329 (40%), Gaps = 69/329 (20%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R +H   +  G      +   L+D+Y +   +  A  +F ++ + D+   T +I A + 
Sbjct: 170 GRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAE 229

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
           S             P++                      ++  F  MR   + PD     
Sbjct: 230 SG-----------VPVE----------------------SLVFFDRMRNQGIVPDKVALV 256

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           +V+ A A +    K    +H  +  +G  L   +  A+I +Y KC S         + +A
Sbjct: 257 TVVYACAKLGAMNKA-KAIHAYINGTGYSLDVILGTAMIDMYAKCGS---------VESA 306

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           R +FD M  R+ ++W+ M+  Y  +   + A E    M          L SG        
Sbjct: 307 RWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMM----------LRSG-------- 348

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
               I  +  T+ S++ AC+++GL   G++  + +   E   TP+  +     +V L  +
Sbjct: 349 ----ILPNRITFVSLLYACSHAGLIEEGQRFFSSMW-DEYGVTPD--VKHYTCMVDLLGR 401

Query: 334 CGKVNEARDIFNQMP-ERDLVSWNAILSA 361
            G+++EA ++   MP E+D V W A+L A
Sbjct: 402 AGRLDEALEMIEGMPVEKDEVLWGALLGA 430


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Glycine max]
          Length = 1033

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 257/734 (35%), Positives = 402/734 (54%), Gaps = 86/734 (11%)

Query: 67   VYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSH 126
            V+A  + + +    I+    L+  Y+  + +  AR +F   P K  DTV +N++I+   H
Sbjct: 376  VHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSK--DTVSWNSIISGLDH 433

Query: 127  NSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA---LALIVEEEKQCMQMHCTVVKSGTGL 183
            N     A+  F  MRR+ + P  F+  S LS+   L  I+  +    Q+H   +K G  L
Sbjct: 434  NERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQ----QIHGEGIKCGLDL 489

Query: 184  FTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND--YL 241
              SV NAL+++Y +            M   ++VF  MPE D++SW + +     ++   L
Sbjct: 490  DVSVSNALLTLYAE---------TDCMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVL 540

Query: 242  DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
             A + FL+ M       W                     +  T+ +++SA ++  L  LG
Sbjct: 541  QAIKYFLEMMQ----AGWKP-------------------NRVTFINILSAVSSLSLLELG 577

Query: 302  KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
            +Q+HA +L+            + N L+  Y KC ++ +   IF++M ER           
Sbjct: 578  RQIHALILKHSVADDN----AIENTLLAFYGKCEQMEDCEIIFSRMSER----------- 622

Query: 362  YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
                               R+ +SW  MISG   NG   + + L   M  +G +  D+  
Sbjct: 623  -------------------RDEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTL 663

Query: 422  AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
            A  +++CA +  LE G ++HA  + +  ++ +  G+AL+ MYA+CG ++ A+  F  MP 
Sbjct: 664  ATVLSACASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDYASRFFELMPV 723

Query: 482  VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY 541
             +  SWN+MI+   +HG+G +A++L+ QM + G LPD +TF+ VLSAC+H GLV EG  +
Sbjct: 724  RNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSHVGLVDEGFEH 783

Query: 542  FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL-AGCRIH 600
            F++M   Y + P  +H++  +DLL RAG   + ++ I ++P  P+A IW  +L A CR +
Sbjct: 784  FKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPNALIWRTILGACCRAN 843

Query: 601  G-NIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCS 659
              N +LG +AA+ L +L P +A  YVLLSNM+A  G+W+D    R  MR+  VKKE GCS
Sbjct: 844  SRNTELGRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWEDVEEARLAMRNAEVKKEAGCS 903

Query: 660  WIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYAL 719
            W+ + + VHVF+  D  HPE + +Y  L++++ +MR LGYVP+TK+ L+D+E + KE  L
Sbjct: 904  WVTMKDGVHVFVAGDQTHPEKEKIYDKLKEIMNKMRDLGYVPETKYALYDLELENKEELL 963

Query: 720  STHSEKLAVAFGLMK---LPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRF 776
            S HSEKLA+AF L +   LP    +R++KNLR+CGDCH AFK++S +V R+I++RD  RF
Sbjct: 964  SYHSEKLAIAFVLTRQSELP----IRIIKNLRVCGDCHTAFKYISNIVNRQIILRDSNRF 1019

Query: 777  HHFRDGKCSCGDYW 790
            HHF  G CSC DYW
Sbjct: 1020 HHFDGGICSCQDYW 1033



 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 175/685 (25%), Positives = 288/685 (42%), Gaps = 173/685 (25%)

Query: 5   NADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSL 64
           N DY     NRY         R+  T   A  +H  +  +G        N L++I+ ++ 
Sbjct: 43  NLDY-----NRY---------RDSCTVEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAG 88

Query: 65  KLVYARTLFDEIPQPDIVARTTLIAAYSAS------------------------------ 94
            LV A+ LFDE+PQ ++V+ + L++ Y+ +                              
Sbjct: 89  NLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGMPDEACMLFRGIISAGLLPNHYAIGSALR 148

Query: 95  -------DNVKLARE---MFNKTPLKMRDTVFYNAMITAYSHNS---------------- 128
                  + +KL  E   + +K+P    D V  N +++ YSH S                
Sbjct: 149 ACQELGPNMLKLGMEIHGLISKSPYA-SDMVLSNVLMSMYSHCSASIDDARRVFEEIKMK 207

Query: 129 ----------------NGHAAIELFRDMRRD----DVKPDNFTFTSVLSALALIVEEEKQ 168
                           +  +A +LF  M+R+    + +P+ +TF S+++           
Sbjct: 208 TSASWNSIISVYCRRGDAISAFKLFSSMQREATELNCRPNEYTFCSLVT----------- 256

Query: 169 CMQMHCTVVKSGTGLFTSVLNAL-ISVYVK--CVSSPFVSSRS---LMGAARRVFDEMPE 222
              + C++V  G  L   +L  +  S +VK   V S  VS  +   L+ +A+ +F++M +
Sbjct: 257 ---VACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDD 313

Query: 223 RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDE 282
           R+ ++   +M G  +    + A +    M + V +  NA  S Y           + L  
Sbjct: 314 RNAVTMNGLMVGLARQHQGEEAAKIFKEMKDLVEI--NA--SSYA----------VLLSA 359

Query: 283 FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARD 342
           FT  S +         R G++VHAYL+R       +  + + NALV LY KC  ++ AR 
Sbjct: 360 FTEFSNLKEGK-----RKGQEVHAYLIRN---ALVDVWILIGNALVNLYAKCNAIDNARS 411

Query: 343 IFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG 402
           IF  MP +D VSWN+I                               ISGL  N   EE 
Sbjct: 412 IFQLMPSKDTVSWNSI-------------------------------ISGLDHNERFEEA 440

Query: 403 LKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITM 462
           +  F  MR  G  P  ++    ++SCA LG +  G+Q+H + +  G D  +S  NAL+T+
Sbjct: 441 VACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTL 500

Query: 463 YARCGVVEAANCVFNTMPNVDSVSWNAMIAALG-QHGNGARAIELYEQMLKEGILPDRIT 521
           YA    +E    VF  MP  D VSWN+ I AL     +  +AI+ + +M++ G  P+R+T
Sbjct: 501 YAETDCMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVT 560

Query: 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD---VI 578
           F+ +LSA +   L++ GR+    +H         D  A    LL   GK  + +D   + 
Sbjct: 561 FINILSAVSSLSLLELGRQ----IHALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIF 616

Query: 579 DSLPFKPSAPIWEALLAGCRIHGNI 603
             +  +     W A+++G  IH  I
Sbjct: 617 SRMSERRDEVSWNAMISG-YIHNGI 640



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 155/328 (47%), Gaps = 53/328 (16%)

Query: 337 VNEARDIFNQMPERDLVS---W-NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           V +A  +  Q+ +  L S   W N +++ +V AG +  A+ LF+ M ++NL+SW+ ++SG
Sbjct: 55  VEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSG 114

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA--LENGRQLHAQLVHSGYD 450
            AQNG  +E   LF  +   G  P  YA   A+ +C  LG   L+ G ++H  +  S Y 
Sbjct: 115 YAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYA 174

Query: 451 SSLSAGNALITMYARCGV-VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
           S +   N L++MY+ C   ++ A  VF  +    S SWN++I+   + G+   A +L+  
Sbjct: 175 SDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSS 234

Query: 510 MLKEGI----LPDRITFLTVLS-ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
           M +E       P+  TF ++++ AC+   LV  G    E M                   
Sbjct: 235 MQREATELNCRPNEYTFCSLVTVACS---LVDCGLTLLEQM------------------- 272

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624
           L R  K S  KD+           +  AL++G   +G ID    +A+ +F+ M       
Sbjct: 273 LARIEKSSFVKDLY----------VGSALVSGFARYGLID----SAKMIFEQMDDRNA-- 316

Query: 625 VLLSNMYANLGRW---DDAARVRKLMRD 649
           V ++ +   L R    ++AA++ K M+D
Sbjct: 317 VTMNGLMVGLARQHQGEEAAKIFKEMKD 344


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 261/760 (34%), Positives = 390/760 (51%), Gaps = 97/760 (12%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R +HA +  SG      + N LID+YCK  ++ +AR +F+                  
Sbjct: 59  LGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFES----------------- 101

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                  A E+         D+V +N++I  Y    +    + L   M R  +  +++  
Sbjct: 102 -------ADEL---------DSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYAL 145

Query: 153 TSVLSALALIVEEEKQCMQM-HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
            S L A         +C +M H   VK G  L   V  AL+  Y K            + 
Sbjct: 146 GSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGD---------LE 196

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A ++F  MP+ + + +  M+ G+++ + +  A EF +              + Y+  E+
Sbjct: 197 DATKIFKLMPDPNVVMYNAMIAGFLQMETM--ADEFANE-------------AMYLFFEM 241

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
           +   ++    EFT++S++ AC+    F  GKQ+HA                         
Sbjct: 242 QSRGMKPS--EFTFSSILKACSTIEAFECGKQIHA------------------------- 274

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
                      IF    + D    NA++  Y  +G I++    F +  + +++SWT +I 
Sbjct: 275 ----------QIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIV 324

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
           G  QNG  E GL LF ++   G KP ++  +  +++CA L A+++G Q+HA  + +G  +
Sbjct: 325 GHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGN 384

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
                N+ I MYA+CG +++AN  F    N D VSW+ MI++  QHG    A++L+E M 
Sbjct: 385 FTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMK 444

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571
             GI P+ ITFL VL AC+H GLV+EG RYFE M   +GI P   H A  +DLL RAG+ 
Sbjct: 445 GSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRL 504

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631
           +EA+  I    F+    +W +LL+ CR+H   D G + AE++ +L P  A +YVLL N+Y
Sbjct: 505 AEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIY 564

Query: 632 ANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLV 691
            + G    A  +R LM+DRGVKKEPG SWIEV N VH F+  D +HP +Q +Y  LE+++
Sbjct: 565 NDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEML 624

Query: 692 LEMRKLGYVPDTKFVLHDMESDQKEYAL-STHSEKLAVAFGLMKLPGGATVRVLKNLRIC 750
            E++KL Y+ D K V    E   K+ ++ S HSEKLAV FG++ LP  A VRV+KNLR C
Sbjct: 625 EEIKKLDYI-DEKLVSDASEPKHKDNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRSC 683

Query: 751 GDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             CH   K  S++  REI++RD  RFH FRDG CSCGDYW
Sbjct: 684 WHCHETMKLFSRLENREIILRDPIRFHRFRDGSCSCGDYW 723



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 142/557 (25%), Positives = 246/557 (44%), Gaps = 92/557 (16%)

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ 171
           R+ V +N++I+ Y+     H  + LF++ R  D++ D FTF++ LS     + + +    
Sbjct: 4   RNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTL-DLRLGRL 62

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H  +  SG G    + N+LI +Y KC           +  AR VF+   E D +SW ++
Sbjct: 63  IHALITVSGLGGPVLLTNSLIDMYCKC---------GRIDWARLVFESADELDSVSWNSL 113

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           + GYV+    D     L                      +KML   + L+ +   S + A
Sbjct: 114 IAGYVRIGSNDEMLRLL----------------------VKMLRHGLNLNSYALGSALKA 151

Query: 292 CAN--SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
           C +  S     GK +H        K   +  + V  AL+  Y K G + +A  IF  MP+
Sbjct: 152 CGSNFSSSIECGKMLHG----CAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPD 207

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
            ++V +NA+++ ++            E M +                 +  E + LF +M
Sbjct: 208 PNVVMYNAMIAGFLQ----------METMADE----------------FANEAMYLFFEM 241

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
           +  G KP ++ F+  + +C+ + A E G+Q+HAQ+      S    GNAL+ +Y+  G +
Sbjct: 242 QSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSI 301

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           E     F++ P +D VSW ++I    Q+G     + L+ ++L  G  PD  T   +LSAC
Sbjct: 302 EDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSAC 361

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID-LLCRAGKFSEAKDVIDS--LPFK-- 584
            +   VK G    E +H  Y I  G  ++    +  +C   K  +    IDS  + FK  
Sbjct: 362 ANLAAVKSG----EQIHA-YAIKTGIGNFTIIQNSQICMYAKCGD----IDSANMTFKET 412

Query: 585 --PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM------PHHAGTYVLLSNMYANLGR 636
             P    W  +++    HG      + A  LF+LM      P+H  T++ +    ++ G 
Sbjct: 413 KNPDIVSWSVMISSNAQHG----CAKEAVDLFELMKGSGIAPNHI-TFLGVLVACSHGGL 467

Query: 637 WDDAARVRKLM-RDRGV 652
            ++  R  ++M +D G+
Sbjct: 468 VEEGLRYFEIMKKDHGI 484



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 178/414 (42%), Gaps = 79/414 (19%)

Query: 14  NRYA--SQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYART 71
           N YA  S L+ C      +    + +H   +  G      +   L+D Y K   L  A  
Sbjct: 141 NSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATK 200

Query: 72  LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           +F  +P P++V    +IA +   +   +A E  N+                         
Sbjct: 201 IFKLMPDPNVVMYNAMIAGFLQMET--MADEFANE------------------------- 233

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC-MQMHCTVVKSGTGLFTSVLNA 190
            A+ LF +M+   +KP  FTF+S+L A + I  E  +C  Q+H  + K        + NA
Sbjct: 234 -AMYLFFEMQSRGMKPSEFTFSSILKACSTI--EAFECGKQIHAQIFKYNLQSDEFIGNA 290

Query: 191 LISVYVKCVSSPFVSSRSLMGAAR---RVFDEMPERDELSWTTMMTGYVKNDYLDAAREF 247
           L+ +Y            SL G+     + F   P+ D +SWT+++ G+V+N   +     
Sbjct: 291 LVELY------------SLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTL 338

Query: 248 LDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY 307
              +          L SG             + DEFT + ++SACAN    + G+Q+HAY
Sbjct: 339 FHEL----------LFSGR------------KPDEFTISIMLSACANLAAVKSGEQIHAY 376

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367
            ++T       F++ + N+ + +Y KCG ++ A   F +    D+VSW+ ++S+    G 
Sbjct: 377 AIKT---GIGNFTI-IQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGC 432

Query: 368 IDEAKSLFEAMRER----NLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKP 416
             EA  LFE M+      N +++  ++   +  G  EEGL+ F  M+ + G  P
Sbjct: 433 AKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITP 486



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 111/224 (49%), Gaps = 10/224 (4%)

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
           M +RN++SW  +ISG  Q G+  E + LF + R+   +   + F+ A++ C     L  G
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           R +HA +  SG    +   N+LI MY +CG ++ A  VF +   +DSVSWN++IA   + 
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSAC--NHAGLVKEGRRYFETMHG---PYGIP 552
           G+    + L  +ML+ G+  +     + L AC  N +  ++ G+     +HG     G+ 
Sbjct: 121 GSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGK----MLHGCAVKLGLD 176

Query: 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
                    +D   + G   +A  +   +P  P+  ++ A++AG
Sbjct: 177 LDVVVGTALLDTYAKIGDLEDATKIFKLMP-DPNVVMYNAMIAG 219


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 248/717 (34%), Positives = 386/717 (53%), Gaps = 75/717 (10%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + D+V  T+LI  ++    ++ A  +F ++   MRD +   AMI AY  +     A++ +
Sbjct: 100 EKDVVVATSLIHLFAKCGCLEEAESVF-RSMGAMRDIISVTAMIGAYVRHGKNDLALDTY 158

Query: 138 RDMRRDDVKPDNFTFTSVLSALA---LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
             MR   ++PD FT+ ++L A +    +++ +     +H  +++S      SV NALI++
Sbjct: 159 WKMRSQGLEPDAFTYAAILGACSSPDFLLDGK----HIHKHILESKHFGNISVRNALITM 214

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           Y KC S         +  ++ +F  M  +D +SW  M+  Y            L G  ++
Sbjct: 215 YAKCGS---------LKDSKSLFLTMDVKDVVSWNAMIAAYT-----------LYGHDKD 254

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
               ++           +M  L    D +T++S++ ACA+      G+ +H   +R  A+
Sbjct: 255 AFSLFH-----------RMCTLGHTPDIYTFSSILGACASPKRLEDGRMLH---VRITAR 300

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
                                             +RD    N ++S +   G ++ A+  
Sbjct: 301 GF--------------------------------DRDFAMQNNLISMFTRCGSLESARRY 328

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
           F ++ ++ L +W  M++  AQ   G++ L L+  M LEGF P  + F+  + SCA LGAL
Sbjct: 329 FYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGAL 388

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
             G+ +H      G++  +  G AL+ MYA+CG +  A   F+ + N D VSW+AMIAA 
Sbjct: 389 REGKFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAAS 448

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
            QHG+   A+EL   M  +GI  + +T  +VL AC+H G + EG  YF  +   +GI   
Sbjct: 449 AQHGHAEEALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERD 508

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
           E++   FIDLL RAG   EA+ V+ ++PFK S      LL GC++HG++  G    +++ 
Sbjct: 509 EENTVGFIDLLGRAGWLKEAEHVLHTMPFKVSFVALVTLLGGCKVHGDVRRGKALTKRIV 568

Query: 615 QLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDD 674
            L P + G+YVLL+NMYA  GRWDD A++R+ MR +GVK++ GCS IE  +K++ F V D
Sbjct: 569 ALEPENPGSYVLLNNMYAAAGRWDDVAKLRRYMRKKGVKRQTGCSSIEYRDKIYEFSVGD 628

Query: 675 TAHPEAQAVYKYLEQLVLEMR-KLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLM 733
           T++P    +   LE+L   M+ + GYVPDT+ V HD+  D+KE  L  HSEK+A+ FGL+
Sbjct: 629 TSNPRNLEIRAELERLYSRMKEEEGYVPDTRDVFHDVSDDKKEELLKFHSEKMAMGFGLI 688

Query: 734 KLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             P G+T+R++KNLR+C DCH   K  SK+ GR I+VRDG RFHHF  G CSCGDYW
Sbjct: 689 TSPPGSTLRIIKNLRVCSDCHTVGKLASKITGRRIIVRDGTRFHHFEGGICSCGDYW 745



 Score =  197 bits (502), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 141/531 (26%), Positives = 248/531 (46%), Gaps = 74/531 (13%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D      +I  Y    + + AR++F++  +K R+   ++ ++  Y  N+    A+E++++
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDR--IKQRNAFSWSILVECYVQNAMYQEALEVYKE 58

Query: 140 MRRDDVKPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
           M R ++  D +T +SVL+A   +++ EE + +Q     +  G      V  +LI ++ KC
Sbjct: 59  MVRKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEEL--GFEKDVVVATSLIHLFAKC 116

Query: 199 VSSPFVSSRSLMGAARRVFDEMPE-RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
                      +  A  VF  M   RD +S T M+  YV++   D A          +  
Sbjct: 117 ---------GCLEEAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLA----------LDT 157

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
            W            KM    ++ D FTY +++ AC++      GK +H ++L  E+K   
Sbjct: 158 YW------------KMRSQGLEPDAFTYAAILGACSSPDFLLDGKHIHKHIL--ESKHFG 203

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
             S  V NAL+T+Y KCG + +++ +F  M  +D+VSWNA+++AY          +L+  
Sbjct: 204 NIS--VRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWNAMIAAY----------TLY-- 249

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
                              G+ ++   LF +M   G  P  Y F+  + +CA    LE+G
Sbjct: 250 -------------------GHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDG 290

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           R LH ++   G+D   +  N LI+M+ RCG +E+A   F ++   +  +WN M+AA  Q 
Sbjct: 291 RMLHVRITARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQF 350

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
             G  A+ LY+ ML EG  PDR TF +V+ +C   G ++EG ++        G       
Sbjct: 351 DKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREG-KFIHECSTSCGFEKDVIL 409

Query: 558 YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
               +++  + G  ++AK   D +  K     W A++A    HG+ +  ++
Sbjct: 410 GTALVNMYAKCGSLADAKKSFDGISNKDVVS-WSAMIAASAQHGHAEEALE 459


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 254/755 (33%), Positives = 397/755 (52%), Gaps = 103/755 (13%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           +HA ++ SG      ++ + ++      ++ YAR +FDE P+P +               
Sbjct: 90  IHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVF-------------- 135

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
                               +NA+I  YS ++    AIE++  M+   V PD FT   VL
Sbjct: 136 -------------------LWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVL 176

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
            A + +   E    ++H  + + G      V N L+++Y KC           +  AR V
Sbjct: 177 KACSGVPVLEVG-KRVHGQIFRLGFESDVFVQNGLVALYAKC---------GRVEQARIV 226

Query: 217 FDEMPERDELSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVAWNALISGYVHRELKMLM 275
           F+ + +R+ +SWT+M++GY +N   ++A R F      NV   W AL+S          +
Sbjct: 227 FEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVS----------V 276

Query: 276 LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG 335
           LR       YT V            GK +H  +++   +  P+  +    +L  +Y KCG
Sbjct: 277 LR------AYTDVED-------LEQGKSIHGCVVKMGLEFEPDLLI----SLTAMYAKCG 319

Query: 336 KVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQ 395
           +V  AR  F+QM   +++ WNA++S Y   G  +EA  LF+ M  +N+ + ++ +     
Sbjct: 320 QVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVR---- 375

Query: 396 NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSA 455
                                       AI +CA +G+L+  + +   +  + Y + +  
Sbjct: 376 ---------------------------SAILACAQVGSLDLAKWMGDYINKTEYRNDVFV 408

Query: 456 GNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI 515
             ALI M+A+CG V+ A  VF+   + D V W+AMI   G HG G  AI+L+  M + G+
Sbjct: 409 NTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGV 468

Query: 516 LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAK 575
            P+ +TF+ +L+ACNH+GLV+EG   F +M   YGI     HYA  +DLL R+G  +EA 
Sbjct: 469 CPNDVTFVGLLTACNHSGLVEEGWELFHSMK-YYGIEARHQHYACVVDLLGRSGHLNEAY 527

Query: 576 DVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLG 635
           D I ++P +P   +W ALL  C+I+ ++ LG  AAEQLF L P + G YV LSN+YA+  
Sbjct: 528 DFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSR 587

Query: 636 RWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMR 695
            WD  A+VR LMR++G+ K+ G S IE++ K+  F V D +HP  + +++ LE L   ++
Sbjct: 588 LWDSVAKVRILMREKGLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESLERRLK 647

Query: 696 KLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHN 755
           + G++P  + VLHD+  ++KE  L  HSE+LA+A+GL+    G T+R+ KNLR C +CH+
Sbjct: 648 EAGFIPHIESVLHDLNQEEKEETLCNHSERLAIAYGLISTAPGTTLRITKNLRACINCHS 707

Query: 756 AFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           A K +SK+V REIVVRD  RFHHF++G CSC DYW
Sbjct: 708 ATKLISKLVNREIVVRDANRFHHFKNGVCSCRDYW 742



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 124/468 (26%), Positives = 195/468 (41%), Gaps = 86/468 (18%)

Query: 143 DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSG---TG-LFTSVLNALISVYVKC 198
           D +    F F S  S+L      ++   Q+H  +V SG   +G L T  +NA  ++    
Sbjct: 61  DYIPYSGFDFDSFFSSLLDHSVHKRHLNQIHAQLVVSGLVESGFLVTKFVNASWNI---- 116

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
                      +G AR+VFDE PE     W  ++ GY  +++   A E    M       
Sbjct: 117 ---------GEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQA----- 162

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                SG            +  D FT   V+ AC+   +  +GK+VH  + R       E
Sbjct: 163 -----SG------------VNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGF----E 201

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
             + V N LV LY KCG+V +AR +F  + +R++VSW +++S Y   GL  EA  +F  M
Sbjct: 202 SDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQM 261

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
           R+RN+                               KP   A    + +   +  LE G+
Sbjct: 262 RQRNV-------------------------------KPDWIALVSVLRAYTDVEDLEQGK 290

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
            +H  +V  G +       +L  MYA+CG V  A   F+ M   + + WNAMI+   ++G
Sbjct: 291 SIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNG 350

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
               A+ L+++M+ + I  D IT  + + AC   G +   +       G Y I   E   
Sbjct: 351 YTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAK-----WMGDY-INKTEYRN 404

Query: 559 ARF-----IDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
             F     ID+  + G    A++V D         +W A++ G  +HG
Sbjct: 405 DVFVNTALIDMFAKCGSVDLAREVFDR-TLDKDVVVWSAMIVGYGLHG 451


>gi|242048970|ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
 gi|241925606|gb|EER98750.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
          Length = 686

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 249/676 (36%), Positives = 373/676 (55%), Gaps = 50/676 (7%)

Query: 77  PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
           P  +++ R   I A+  +  V  A  +F    +  R T  YNAM+  Y+ N     A+  
Sbjct: 31  PDAEVIRRNKAITAHMRAGRVPDAERLF--AAMSRRSTSTYNAMLGGYAANGRLTLALSF 88

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           FR + R    PD+F++ ++L AL +             + +     LF  +       Y 
Sbjct: 89  FRSIPR----PDSFSYNTLLHALGV------------SSSLADARALFDEMPVKDSVSYN 132

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
             +SS   ++  L+  AR  FD  PE+D +SW  M+  Y++N  +  AR+  D  +E   
Sbjct: 133 VMISSH--ANHGLVSLARHYFDLAPEKDAVSWNGMLAAYIRNGRIQEARDLFDSRTEWDA 190

Query: 257 VAWNALISGYVH-----RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
           ++WNAL++GYV         KM     Q D  ++ +++S  A     R G    A  L  
Sbjct: 191 ISWNALMAGYVQCSQIEEAQKMFNRMPQRDVVSWNTMVSGHA-----RRGDMAEARRLFD 245

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
            A     F+     A+V+ Y + G + EA+ +F+ MPE++ VSWNA+++AYV   +++EA
Sbjct: 246 VAPIRDVFTW---TAVVSGYAQNGMLEEAKRVFDAMPEKNAVSWNAMMAAYVQRRMMEEA 302

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
           K LF+AM  RN+ SW  M++G AQ G  +E   +F  M     +    ++A  + + +  
Sbjct: 303 KELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFDMMP----QKDAVSWAAMLAAYSQG 358

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
           G  E   QL  ++                 MY +CG +E A+  F  M   D VSWN MI
Sbjct: 359 GFSEETLQLFKEM-------------GRCAMYFKCGNMEEAHSAFEEMEERDIVSWNTMI 405

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
           A   +HG G  A+E+++ M K    PD IT + VL+AC+H+GLV++G  YF +MH  +G+
Sbjct: 406 AGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGV 465

Query: 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611
               +HY   IDLL RAG+  EA +++  +PF+P + +W ALL   RIH N +LG  AAE
Sbjct: 466 TAKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAE 525

Query: 612 QLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFL 671
           ++F+L P +AG YVLLSN+YA+ G+W D  ++R +M +RGVKK PG SWIEV NKVH F 
Sbjct: 526 KIFELEPENAGMYVLLSNIYASSGKWRDVDKMRLMMHERGVKKVPGFSWIEVQNKVHTFS 585

Query: 672 VDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFG 731
           V D+ HPE + +Y +LE L + M+K GYV  T  VLHD+E ++KE+ L  HSEKLAVA+G
Sbjct: 586 VGDSVHPEREDIYGFLEDLDIRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYG 645

Query: 732 LMKLPGGATVRVLKNL 747
           ++K+P G  +R   NL
Sbjct: 646 ILKIPPGRPIRQCCNL 661



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 134/477 (28%), Positives = 211/477 (44%), Gaps = 78/477 (16%)

Query: 47  KPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNK 106
           +P     N L+     S  L  AR LFDE+P  D V+   +I++++    V LAR  F+ 
Sbjct: 94  RPDSFSYNTLLHALGVSSSLADARALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDL 153

Query: 107 TPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEE 166
            P K  D V +N M+ AY  N     A +LF          D+ T    +S  AL+    
Sbjct: 154 APEK--DAVSWNGMLAAYIRNGRIQEARDLF----------DSRTEWDAISWNALMAG-- 199

Query: 167 KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDEL 226
                + C+ ++    +F  +    +  +   VS    + R  M  ARR+FD  P RD  
Sbjct: 200 ----YVQCSQIEEAQKMFNRMPQRDVVSWNTMVSGH--ARRGDMAEARRLFDVAPIRDVF 253

Query: 227 SWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYT 286
           +WT +++GY +N  L+ A+   D M E   V+WNA+++ YV R +        ++E    
Sbjct: 254 TWTAVVSGYAQNGMLEEAKRVFDAMPEKNAVSWNAMMAAYVQRRM--------MEEAKEL 305

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
                C N   +                          N ++T Y + G ++EAR IF+ 
Sbjct: 306 FDAMPCRNVASW--------------------------NTMLTGYAQAGMLDEARAIFDM 339

Query: 347 MPERDLVSWNAILSAYVSAGL----------------------IDEAKSLFEAMRERNLL 384
           MP++D VSW A+L+AY   G                       ++EA S FE M ER+++
Sbjct: 340 MPQKDAVSWAAMLAAYSQGGFSEETLQLFKEMGRCAMYFKCGNMEEAHSAFEEMEERDIV 399

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG-RQLHAQ 443
           SW  MI+G A++G+G+E L++F  MR    KP D    G + +C+  G +E G    ++ 
Sbjct: 400 SWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSM 459

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
               G  +       +I +  R G ++ A  +   MP   DS  W A++ A   H N
Sbjct: 460 HRDFGVTAKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRN 516


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 238/613 (38%), Positives = 344/613 (56%), Gaps = 74/613 (12%)

Query: 179 SGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKN 238
           +G G+F S  N+L+S+Y K           L+  A R+FD MPER+ ++WTT++      
Sbjct: 111 AGGGIFVS--NSLVSMYAKF---------GLLDDALRLFDRMPERNVVTWTTVVAALANA 159

Query: 239 D-YLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGL 297
           D   + A  FL  M  + GVA NA                     +T++SV+ AC   G+
Sbjct: 160 DGRKEEALRFLVAMWRD-GVAPNA---------------------YTFSSVLGACGTPGV 197

Query: 298 FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA 357
                                        L  L+    KV    D+F +         ++
Sbjct: 198 -----------------------------LAALHASTVKVGLDSDVFVR---------SS 219

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
           ++ AY+  G +D  + +F+ M  R+L+ W  +I+G AQ+G G   ++LF +M+  GF   
Sbjct: 220 LIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSAN 279

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
                  + +C G+  LE GRQ+HA ++   Y+  L   NAL+ MY +CG +E A  +F+
Sbjct: 280 QGTLTSVLRACTGMVMLEAGRQVHAHVLK--YERDLILHNALLDMYCKCGSLEDAEALFH 337

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKE 537
            MP  D +SW+ MI+ L Q+G  A A+ +++ M  EG+ P+RIT + VL AC+HAGLV++
Sbjct: 338 RMPQRDVISWSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVED 397

Query: 538 GRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
           G  YF +M   +GI P  +H+   +DLL RAGK  EA + I  +  +P A IW  LL  C
Sbjct: 398 GWYYFRSMKKLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGAC 457

Query: 598 RIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPG 657
           R+H + +L   AA ++ +L P   G  VLLSN YA+L +W DA +  K MRDRG+KKEPG
Sbjct: 458 RMHKSGNLAAYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPG 517

Query: 658 CSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEY 717
            SWIE++  VHVF+  D +HP +  + + L +L+  +  LGYVP T+FVL D+  +QKE 
Sbjct: 518 RSWIELEKHVHVFIAGDLSHPCSDTIVQELNRLIGRISALGYVPQTEFVLQDLAIEQKED 577

Query: 718 ALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFH 777
            L  HSEK+A+AFG M   GG  +R++KNLRICGDCH   K +SK  GR I++RD  RFH
Sbjct: 578 LLKYHSEKMAIAFGTMHAVGGKPIRIMKNLRICGDCHAFAKLVSKSEGRMIIIRDPVRFH 637

Query: 778 HFRDGKCSCGDYW 790
           HF+DG CSCGDYW
Sbjct: 638 HFQDGACSCGDYW 650



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 116/463 (25%), Positives = 192/463 (41%), Gaps = 106/463 (22%)

Query: 52  IINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKM 111
           + N L+ +Y K   L  A  LFD +P+ ++V  TT++AA + +D  K             
Sbjct: 117 VSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRK------------- 163

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ 171
                                A+     M RD V P+ +TF+SVL A             
Sbjct: 164 -------------------EEALRFLVAMWRDGVAPNAYTFSSVLGACG----TPGVLAA 200

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H + VK G      V ++LI  Y+K            +   RRVFDEM  RD + W ++
Sbjct: 201 LHASTVKVGLDSDVFVRSSLIDAYMKLGD---------LDGGRRVFDEMVTRDLVVWNSI 251

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           + G+ ++          DG+             G +   ++M       ++ T TSV+ A
Sbjct: 252 IAGFAQSG---------DGV-------------GAIELFMRMKDAGFSANQGTLTSVLRA 289

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           C    +   G+QVHA++L+ E        L ++NAL+ +Y KCG + +A  +F++MP+RD
Sbjct: 290 CTGMVMLEAGRQVHAHVLKYER------DLILHNALLDMYCKCGSLEDAEALFHRMPQRD 343

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
           ++SW+ ++                               SGLAQNG   E L++F  M+ 
Sbjct: 344 VISWSTMI-------------------------------SGLAQNGKSAEALRVFDLMKS 372

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH-SGYDSSLSAGNALITMYARCGVV- 469
           EG  P      G + +C+  G +E+G      +    G        N ++ +  R G + 
Sbjct: 373 EGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREHHNCMVDLLGRAGKLD 432

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           EA   + +     D+V W  ++ A   H +G  A     ++LK
Sbjct: 433 EAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAYAAREILK 475



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 155/346 (44%), Gaps = 55/346 (15%)

Query: 281 DEFTYTSVISACANSGLFRLGKQVH----AYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
           D  + T ++  C   G    G+ +H    A+   +         + V+N+LV++Y K G 
Sbjct: 71  DPVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGL 130

Query: 337 VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
           +++A  +F++MPER++V+W  +++A  +A                              +
Sbjct: 131 LDDALRLFDRMPERNVVTWTTVVAALANA------------------------------D 160

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
           G  EE L+    M  +G  P  Y F+  + +C   G L     LHA  V  G DS +   
Sbjct: 161 GRKEEALRFLVAMWRDGVAPNAYTFSSVLGACGTPGVLA---ALHASTVKVGLDSDVFVR 217

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
           ++LI  Y + G ++    VF+ M   D V WN++IA   Q G+G  AIEL+ +M   G  
Sbjct: 218 SSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFS 277

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED---HYARFIDLLCRAGKFSE 573
            ++ T  +VL AC    +++ GR+    +     +    D   H A  +D+ C+ G   +
Sbjct: 278 ANQGTLTSVLRACTGMVMLEAGRQVHAHV-----LKYERDLILHNA-LLDMYCKCGSLED 331

Query: 574 AKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL--FQLM 617
           A+ +   +P +     W  +++G   +G      ++AE L  F LM
Sbjct: 332 AEALFHRMPQRDVIS-WSTMISGLAQNG------KSAEALRVFDLM 370



 Score = 44.7 bits (104), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 85/232 (36%), Gaps = 78/232 (33%)

Query: 34  ARSVHAHMISSGFKPREHII-NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
            R VHAH++      R+ I+ N L+D+YCK   L  A  LF  +PQ D+++         
Sbjct: 299 GRQVHAHVLKY---ERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVIS--------- 346

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                   ++ MI+  + N     A+ +F  M+ + V P+  T 
Sbjct: 347 ------------------------WSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITM 382

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
             VL A +            H  +V+ G   F S+                         
Sbjct: 383 VGVLFACS------------HAGLVEDGWYYFRSM------------------------- 405

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS-ENVGVAWNALI 263
            +++F   PER+  +    + G  +   LD A EF+  M+ E   V W  L+
Sbjct: 406 -KKLFGIQPEREHHNCMVDLLG--RAGKLDEAVEFIRDMNLEPDAVIWRTLL 454


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 255/696 (36%), Positives = 383/696 (55%), Gaps = 56/696 (8%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
           N +I  + K+ ++  AR LFD +PQ +IV+  ++IAAY  +D V+ AR++F+K P   RD
Sbjct: 50  NSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMP--TRD 107

Query: 114 TVFYNAMITAYSHNSN-------------------------GHAAIELFRDMRR-DDVKP 147
              +  MIT Y+ N                           G+A    F + RR  D  P
Sbjct: 108 LYSWTLMITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMP 167

Query: 148 --DNFTFTSVLSA--------LAL-IVEEEKQCMQMHCTVVKSGTGLFTSV--LNALISV 194
             D  ++ S+L+         L L   EE  +   +   ++  G   F  V  LN+    
Sbjct: 168 AKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDG---FVEVGDLNSSWEF 224

Query: 195 YVKCVSSPFVSSRSLM---------GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245
           + K  +   VS  +++           ARR+FD+MP R+ ++W  M+  YV+N ++D A 
Sbjct: 225 FEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAI 284

Query: 246 EFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
                M E   ++W  +I+GYV R  K+   R  L++  Y +V +  A    +   K++ 
Sbjct: 285 SLFMEMPEKNSISWTTVINGYV-RMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMD 343

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365
               R          +   N ++  Y +CG+++EA  +F QM ++D+VSWN ++++Y   
Sbjct: 344 D--ARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQV 401

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425
           G +D A  +FE M+E+N++SW  +ISGL QNG   + LK F  M  EG KP    FA  +
Sbjct: 402 GQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGL 461

Query: 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV 485
           +SCA L AL+ G+QLH  ++ SGY + L   NALITMYA+CG + +A  +F  + + D V
Sbjct: 462 SSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVV 521

Query: 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETM 545
           SWN++IAA   +GNG  A++L+ +M  EG+ PD +TF+ +LSAC+H GL+ +G + F+ M
Sbjct: 522 SWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCM 581

Query: 546 HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDL 605
              Y I P  +HYA  +DLL RAG+  EA  ++  +    +A IW ALL  CRIHGN++L
Sbjct: 582 VQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLEL 641

Query: 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDN 665
              AAE+L +  PH    YVLLSNM A  GRWD+ ARVR+LM+++G +K+PG SWIE+ N
Sbjct: 642 AKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQN 701

Query: 666 KVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVP 701
           +VH FL +D AHP A  +   L  L   MR     P
Sbjct: 702 RVHAFLSEDPAHPRAVELCHILRSLTAHMRNTAKCP 737



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 164/347 (47%), Gaps = 28/347 (8%)

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
           +N  +T   K G+++EA  +F  M  ++ V+ N+++SA+   G I +A+ LF+ M +RN+
Sbjct: 18  HNLKITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNI 77

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
           +SW  MI+    N   EE  +LF +M         Y++   IT     G L   R L   
Sbjct: 78  VSWNSMIAAYLHNDRVEEARQLFDKMPTRDL----YSWTLMITCYTRNGELAKARNLFNL 133

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
           L    Y  +    NA++  YA+    + A  +F+ MP  D VSWN+M+    ++G     
Sbjct: 134 L---PYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLG 190

Query: 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563
           ++ +E+M +     D +++  ++      G +     +FE +  P  +         ++ 
Sbjct: 191 LQFFEEMAER----DVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVS--------WVT 238

Query: 564 LLC---RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH- 619
           +LC   R GK +EA+ + D +P + +   W A++A    + ++D  I     LF  MP  
Sbjct: 239 MLCGFARFGKIAEARRLFDQMPIR-NVVAWNAMIAAYVQNCHVDEAI----SLFMEMPEK 293

Query: 620 HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNK 666
           ++ ++  + N Y  +G+ D+A ++   M  R V  +       V NK
Sbjct: 294 NSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNK 340



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 45/158 (28%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           + + +H  ++ SG+     + N LI +Y K   +  A  LF +I   D+V+  +LIAAY+
Sbjct: 472 VGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYA 531

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                             N NG  A++LF  M  + V PD  TF
Sbjct: 532 L---------------------------------NGNGREALKLFHKMEVEGVAPDEVTF 558

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNA 190
             +LSA +            H  ++  G  LF  ++ A
Sbjct: 559 VGILSACS------------HVGLIDQGLKLFKCMVQA 584


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 250/701 (35%), Positives = 374/701 (53%), Gaps = 88/701 (12%)

Query: 100 AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL 159
           A+++F+  P K  D V +N++I  Y        +I++F +M    ++P   T  ++L A 
Sbjct: 199 AQKVFDGMPEK--DVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKAC 256

Query: 160 ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDE 219
                 +K  M  H  V+  G G    VL +L+ +Y         S+    G+A  VFD 
Sbjct: 257 GQ-SGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMY---------SNLGDTGSAALVFDS 306

Query: 220 MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR----ELKMLM 275
           M  R  +SW                               NA+ISGYV      E   L 
Sbjct: 307 MCSRSLISW-------------------------------NAMISGYVQNGMIPESYALF 335

Query: 276 LRI-----QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
            R+       D  T  S+I  C+ +     G+ +H+ ++R E     E  L ++ A+V +
Sbjct: 336 RRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKEL----ESHLVLSTAIVDM 391

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y KC                               G I +A  +F  M ++N+++WT M+
Sbjct: 392 YSKC-------------------------------GAIKQATIVFGRMGKKNVITWTAML 420

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
            GL+QNGY E+ LKLF QM+ E            +  CA LG+L  GR +HA  +  GY 
Sbjct: 421 VGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYA 480

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNV-DSVSWNAMIAALGQHGNGARAIELYEQ 509
                 +ALI MYA+CG + +A  +FN   ++ D +  N+MI   G HG+G  A+ +Y +
Sbjct: 481 FDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSR 540

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
           M++E + P++ TF+++L+AC+H+GLV+EG+  F +M   + + P   HYA  +DL  RAG
Sbjct: 541 MIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAG 600

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629
           +  EA +++  +PF+PS  + EALL+GCR H N ++GIQ A++L  L   ++G YV+LSN
Sbjct: 601 RLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQIADRLISLDYLNSGIYVMLSN 660

Query: 630 MYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQ 689
           +YA   +W+    +R LMR +G+KK PG S IEV NKV+ F   D +HP    +Y+ LE 
Sbjct: 661 IYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVYTFFASDDSHPSWADIYQLLEN 720

Query: 690 LVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRI 749
           L LE+   GY+PDT  VL D+    K   L  HSE+LA+AFGL+  P G+ +++ KNLR+
Sbjct: 721 LRLEVEAEGYIPDTSCVLRDVNEPMKVKLLWGHSERLAIAFGLLSTPCGSLIKITKNLRV 780

Query: 750 CGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           C DCHN  K++SK+V REI+VRD  RFHHF +GKCSC D+W
Sbjct: 781 CVDCHNVTKYISKIVQREIIVRDANRFHHFVNGKCSCNDFW 821



 Score =  179 bits (453), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 166/670 (24%), Positives = 290/670 (43%), Gaps = 123/670 (18%)

Query: 23  CDP-RNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSL---KLVYARTLFDEIPQ 78
           C P  N   SS   SVH    +  F     + + L+  +  +L   K ++A+ + + +  
Sbjct: 21  CRPIYNAAPSSTFVSVHH---APFFNQAPSVFSSLLHQFSNTLIHVKSIHAQIIKNWVST 77

Query: 79  PDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFR 138
              +A   LI  YS    +  AR +F++  L   +T   NAMI  +  N        LFR
Sbjct: 78  ESFLA-AKLIRVYSDLGFLGHARNVFDQCSLP--ETAVCNAMIAGFLRNQQHMEVPRLFR 134

Query: 139 DMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
            M   D++ +++T    L A   ++++E   M++    V+ G  L   V +++++  VK 
Sbjct: 135 MMGSCDIEINSYTCMFALKACTDLLDDEVG-MEIIRAAVRRGFHLHLYVGSSMVNFLVK- 192

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
                   R  +  A++VFD MPE+D + W +++ GYV+                  G+ 
Sbjct: 193 --------RGYLADAQKVFDGMPEKDVVCWNSIIGGYVQK-----------------GLF 227

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
           W +     +   L+M+   ++    T  +++ AC  SGL ++G   H+Y+L         
Sbjct: 228 WES-----IQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGN--- 279

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
             + V  +LV +Y   G    A  +F+ M  R L+SWNA++S YV  G+I E+ +LF   
Sbjct: 280 -DVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRR- 337

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
                         L Q+G G +   L S +R                 C+    LENGR
Sbjct: 338 --------------LVQSGSGFDSGTLVSLIR----------------GCSQTSDLENGR 367

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
            LH+ ++    +S L    A++ MY++CG ++ A  VF  M   + ++W AM+  L Q+G
Sbjct: 368 ILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNG 427

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY---GIPPGE 555
               A++L+ QM +E +  + +T ++++  C H G + +GR    T+H  +   G     
Sbjct: 428 YAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGR----TVHAHFIRHGYAFDA 483

Query: 556 DHYARFIDLLCRAGKFSEA----------KDVI--DSL---------------------- 581
              +  ID+  + GK   A          KDVI  +S+                      
Sbjct: 484 VITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIE 543

Query: 582 -PFKPSAPIWEALLAGCRIHGNIDLG---IQAAEQLFQLMPHHAGTYVLLSNMYANLGRW 637
              KP+   + +LL  C   G ++ G     + E+   + P H   Y  L ++++  GR 
Sbjct: 544 ERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHK-HYACLVDLHSRAGRL 602

Query: 638 DDAARVRKLM 647
           ++A  + K M
Sbjct: 603 EEADELVKQM 612


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/684 (34%), Positives = 375/684 (54%), Gaps = 42/684 (6%)

Query: 113 DTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQM 172
           +++ +N+++   S +    A I  ++ +R    + D  +F  +L A++  V    + M++
Sbjct: 78  ESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSK-VSALFEGMEL 136

Query: 173 HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMM 232
           H    K  T     V   L+ +Y  C           +  AR VFDEM +RD ++W TM+
Sbjct: 137 HGFAFKIATLSDPFVETGLMDMYAAC---------GRINYARNVFDEMSQRDVVTWNTMI 187

Query: 233 TGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISAC 292
             Y +   LD A +  + M ++                       +  DE    +++SAC
Sbjct: 188 ERYCRFGLLDEAFKLFEEMKDS----------------------NVMPDEMILCNIVSAC 225

Query: 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL 352
             +G  R  + ++ +L+  + +        +  ALVT+Y   G ++ A + F +M  R+L
Sbjct: 226 GRTGNMRYNRAIYDFLIENDVR----MDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNL 281

Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
               A++S Y  AG +D+A+ +F+    ++L+ WT MIS  A++ + +E L++F +M   
Sbjct: 282 FVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCS 341

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
           G KP        I++C  LG L+  + +H     +G +S L   NALI MYA+CG ++AA
Sbjct: 342 GIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAA 401

Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
             VF  MP  + VSW++MI A   HG  + ++ L+ QM +E + P+ +TF+ VL  C+H+
Sbjct: 402 RDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHS 461

Query: 533 GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592
           GLV+EG++ F +M   Y I P  +HY   +DL  RA    EA +VI+S+P  P+  IW +
Sbjct: 462 GLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGS 521

Query: 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           L++ CR+HG ++LG  AA+++ +L P H G  VL+SN+YA   RWD    +R +M  + V
Sbjct: 522 LMSACRVHGELELGELAAKRILKLEPDHDGALVLMSNIYAREYRWDYVRIIRWIMEKKKV 581

Query: 653 KKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMES 712
            KE G S I+++ K H FL+ D  H ++  +Y  L ++V +++  GYVPD   VL D+E 
Sbjct: 582 FKEKGLSRIDLNGKSHEFLIGDKRHKQSNEIYTKLYEVVSKLKLAGYVPDGGSVLVDVEE 641

Query: 713 DQKEYALSTHSEKLAVAFGLMKLP------GGATVRVLKNLRICGDCHNAFKFMSKVVGR 766
           ++K+  +  HSEKLA+ FGLM             +R++KNLR+C DCH  FK +SKV   
Sbjct: 642 EEKKDLVLWHSEKLALCFGLMNKEKEEEKGSCGVIRIVKNLRVCEDCHAFFKLVSKVYEL 701

Query: 767 EIVVRDGKRFHHFRDGKCSCGDYW 790
           EI+VRD  RFH ++DG CSC DYW
Sbjct: 702 EIIVRDRTRFHRYKDGLCSCRDYW 725



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 115/457 (25%), Positives = 195/457 (42%), Gaps = 95/457 (20%)

Query: 56  LIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTV 115
           L+D+Y    ++ YAR +FDE+ Q D+V                                 
Sbjct: 155 LMDMYAACGRINYARNVFDEMSQRDVVT-------------------------------- 182

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
            +N MI  Y        A +LF +M+  +V PD     +++SA        +    ++  
Sbjct: 183 -WNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGR-TGNMRYNRAIYDF 240

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
           ++++   + T +L AL+++Y         +    M  A   F +M  R+    T M++GY
Sbjct: 241 LIENDVRMDTHLLTALVTMY---------AGAGCMDMAMEFFRKMSVRNLFVSTAMVSGY 291

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLR---------IQLDEFTYT 286
            K   LD AR   D       V W  +IS Y   +     LR         I+ D  T  
Sbjct: 292 SKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTML 351

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
           SVISAC N G     K VH Y          E  LP++NAL+ +Y KCG ++ ARD+F +
Sbjct: 352 SVISACVNLGTLDKAKWVHRYTHLNGL----ESVLPIDNALINMYAKCGGLDAARDVFEK 407

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL----LSWTVMISGLAQNGYGEEG 402
           MP R++VSW+++++A+   G   ++ SLF  M++ N+    +++  ++ G + +G  EEG
Sbjct: 408 MPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEG 467

Query: 403 LKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITM 462
            K+F+ M  E                           +  ++ H G          ++ +
Sbjct: 468 KKIFASMTDE-------------------------YNITPKIEHYG---------CMVDL 493

Query: 463 YARCGVVEAANCVFNTMPNV-DSVSWNAMIAALGQHG 498
           + R  ++  A  V  +MP   + V W ++++A   HG
Sbjct: 494 FGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHG 530



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 158/329 (48%), Gaps = 40/329 (12%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           R+++  +I +  +   H++  L+ +Y  +  +  A   F ++   ++   T +++ YS +
Sbjct: 235 RAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKA 294

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
             +  AR +F++T  +M+D V +  MI+AY+ + +   A+ +F +M    +KPD  T  S
Sbjct: 295 GRLDDARVIFDQT--EMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLS 352

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           V+SA   +   +K    +H     +G      + NALI++Y KC           + AAR
Sbjct: 353 VISACVNLGTLDK-AKWVHRYTHLNGLESVLPIDNALINMYAKCGG---------LDAAR 402

Query: 215 RVFDEMPERDELSWTTMMTGY-VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
            VF++MP R+ +SW++M+  + +  +  D+   F     ENV                  
Sbjct: 403 DVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENV------------------ 444

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
                + +E T+  V+  C++SGL   GK++ A  +  E   TP+  +     +V L+ +
Sbjct: 445 -----EPNEVTFVGVLYGCSHSGLVEEGKKIFAS-MTDEYNITPK--IEHYGCMVDLFGR 496

Query: 334 CGKVNEARDIFNQMP-ERDLVSWNAILSA 361
              + EA ++   MP   ++V W +++SA
Sbjct: 497 ANLLREALEVIESMPMAPNVVIWGSLMSA 525


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/605 (38%), Positives = 357/605 (59%), Gaps = 38/605 (6%)

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           N LI +Y KC   P+         AR +F+ MP R+  +WT  M  +  N     A  F 
Sbjct: 101 NLLIEMYGKCGRLPY---------ARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFF 151

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRL--GKQVHA 306
             M +          SG             + D  T++ +++A A  G   +  G+++H 
Sbjct: 152 RRMYQ----------SGE------------RPDRVTFSVILAAIAQMGAAAIDQGREIHR 189

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366
           Y   +   P    ++ V  A++++Y KCG++++AR  F ++  ++ V+WNA+++ Y   G
Sbjct: 190 YARISGLLP----NVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDG 245

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR-LEGFKPCDYAFAGAI 425
              EA  LF  M + + + W  MI+  AQ+G G++ L L+  M       P    F   I
Sbjct: 246 RDREALELFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVI 305

Query: 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV 485
             CA L AL+ GR +HA++  + +D++L   NAL+ MY +CG ++ A  VF++M   D +
Sbjct: 306 DVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEI 365

Query: 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETM 545
           SWN +I++   HG+  +A+ LY++M  +G+ P  +TF+ +LSAC+H GLV +G  YF  M
Sbjct: 366 SWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRM 425

Query: 546 HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDL 605
              + I P   H+   IDLL R G+ +EA+ V+ S+P + +A  W +LL  C+ HG++  
Sbjct: 426 QDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKR 485

Query: 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDN 665
           G++AA+Q+   +P  +G YVLLSN+YA  GRW D  ++RK+M  RGVKK PG SWIE+ +
Sbjct: 486 GVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEIGD 545

Query: 666 KVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEK 725
            VH F+  D++HP+ + +Y  L ++V EM+ LGYVPDT  V HD+E ++KE  L  HSEK
Sbjct: 546 VVHEFVSGDSSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKEDLLVCHSEK 605

Query: 726 LAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCS 785
           LA+ +G M +PG + +R++KNLR+C DCH A KFMS++ GR+IVVRD  RFH F +G CS
Sbjct: 606 LAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAARFHLFENGSCS 665

Query: 786 CGDYW 790
           C DYW
Sbjct: 666 CRDYW 670



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 131/512 (25%), Positives = 226/512 (44%), Gaps = 96/512 (18%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMIS---SGFKPREHIINRLIDIYCKSLKLVYARTL 72
           YA+ ++ C   N I++  AR +H+H++S   S  +P   + N LI++Y K  +L YAR  
Sbjct: 63  YAALIRRCGAANAISA--ARRLHSHILSLPHSNSQP-PFLANLLIEMYGKCGRLPYAR-- 117

Query: 73  FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
                                        E+F   P   R+   +   + A+SHN     
Sbjct: 118 -----------------------------ELFESMP--SRNVHTWTVAMAAFSHNGCHSE 146

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEE-KQCMQMHCTVVKSGTGLFTSVLNAL 191
           A+  FR M +   +PD  TF+ +L+A+A +      Q  ++H     SG      V  A+
Sbjct: 147 ALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVVVGTAV 206

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           IS+Y KC           +  AR  F+E+  ++ ++W  MMT Y  +     A E    M
Sbjct: 207 ISMYGKC---------GRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREM 257

Query: 252 SENVGVAWNALISGYVHR---ELKMLMLRIQLD-------EFTYTSVISACANSGLFRLG 301
            +   V WNA+I+ Y      +  + + R   D       + T+ +VI  CA     + G
Sbjct: 258 HDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQG 317

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
           + +HA +  T      + +L V+NALV +Y KCG ++EA D+F+ M  +D +SWN I+S+
Sbjct: 318 RAIHARVRATNF----DANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISS 373

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
           Y                               A +G+ ++ L L+ +M L+G KP +  F
Sbjct: 374 Y-------------------------------AYHGHSDQALLLYQEMDLQGVKPTEVTF 402

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSG-YDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
            G +++C+  G + +G     ++        S+     +I +  R G +  A  V  +MP
Sbjct: 403 VGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMP 462

Query: 481 -NVDSVSWNAMIAALGQHGNGARAIELYEQML 511
              ++V W +++ A   HG+  R +   +Q++
Sbjct: 463 IQANAVQWMSLLGACKTHGDLKRGVRAADQVV 494



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 156/347 (44%), Gaps = 18/347 (5%)

Query: 267 VHRELKMLMLR-IQLDEFTYTSVISACANSGLFRLGKQVHAYLLR-TEAKPTPEFSLPVN 324
           +H+ +++L  R ++LD   Y ++I  C  +      +++H+++L    +   P F   + 
Sbjct: 44  LHKSIQLLESRELELDPVGYAALIRRCGAANAISAARRLHSHILSLPHSNSQPPF---LA 100

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE---- 380
           N L+ +Y KCG++  AR++F  MP R++ +W   ++A+   G   EA   F  M +    
Sbjct: 101 NLLIEMYGKCGRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGER 160

Query: 381 --RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
             R   S  +           ++G ++    R+ G  P        I+     G L++ R
Sbjct: 161 PDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDAR 220

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
               +L    + +S++  NA++T Y   G    A  +F  M + DSV WNAMIAA  QHG
Sbjct: 221 AAFEEL---QWKNSVT-WNAMMTNYKLDGRDREALELFREMHDADSVCWNAMIAAYAQHG 276

Query: 499 NGARAIELYEQMLKEGIL-PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
            G +A++LY  M     L P + TF+TV+  C     +K+GR     +            
Sbjct: 277 RGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRAT-NFDANLLV 335

Query: 558 YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
               + +  + G   EA DV  S+  K     W  +++    HG+ D
Sbjct: 336 SNALVHMYGKCGCLDEALDVFHSMKLKDEIS-WNTIISSYAYHGHSD 381



 Score =  100 bits (250), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 157/371 (42%), Gaps = 41/371 (11%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R +H +   SG  P   +   +I +Y K  +L  AR  F+E+   + V    ++  Y  
Sbjct: 184 GREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKL 243

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMR-RDDVKPDNFTF 152
               + A E+F +  +   D+V +NAMI AY+ +  G  A++L+R M    D+ P   TF
Sbjct: 244 DGRDREALELFRE--MHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTF 301

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            +V+   A +    KQ   +H  V  +       V NAL+ +Y KC           +  
Sbjct: 302 VTVIDVCAEL-SALKQGRAIHARVRATNFDANLLVSNALVHMYGKC---------GCLDE 351

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A  VF  M  +DE+SW T+++ Y  + + D A      M                     
Sbjct: 352 ALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMD-------------------- 391

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
             +  ++  E T+  ++SAC++ GL   G     Y  R +     + S+P    ++ L  
Sbjct: 392 --LQGVKPTEVTFVGLLSACSHGGLVADGLD---YFYRMQDDHRIKPSVPHFGCIIDLLG 446

Query: 333 KCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
           + G++ EA  +   MP + + V W ++L A  + G  D  + +  A +  + + WT    
Sbjct: 447 RGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHG--DLKRGVRAADQVVDRVPWTSGGY 504

Query: 392 GLAQNGYGEEG 402
            L  N Y   G
Sbjct: 505 VLLSNIYAAAG 515



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 118/269 (43%), Gaps = 29/269 (10%)

Query: 396 NGYGE-----EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
           N +GE     + ++L     LE   P  YA    I  C    A+   R+LH+ ++   + 
Sbjct: 36  NSFGERESLHKSIQLLESRELE-LDPVGYA--ALIRRCGAANAISAARRLHSHILSLPHS 92

Query: 451 SSLSA--GNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
           +S      N LI MY +CG +  A  +F +MP+ +  +W   +AA   +G  + A+  + 
Sbjct: 93  NSQPPFLANLLIEMYGKCGRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFR 152

Query: 509 QMLKEGILPDRITFLTVL--SACNHAGLVKEGR---RYFETMHGPYGIPPGEDHYARFID 563
           +M + G  PDR+TF  +L   A   A  + +GR   RY        G+ P        I 
Sbjct: 153 RMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS----GLLPNVVVGTAVIS 208

Query: 564 LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623
           +  + G+  +A+   + L +K S   W A++   ++ G      + A +LF+ M  H   
Sbjct: 209 MYGKCGRLDDARAAFEELQWKNSV-TWNAMMTNYKLDGR----DREALELFREM--HDAD 261

Query: 624 YVLLSNM---YANLGRWDDAARVRKLMRD 649
            V  + M   YA  GR   A  + + M D
Sbjct: 262 SVCWNAMIAAYAQHGRGKQALDLYRSMHD 290


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 260/760 (34%), Positives = 393/760 (51%), Gaps = 100/760 (13%)

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMR--RDDVKPDNFTFTSVLSALALIVEEEKQC 169
           RD V  N+++T YS      +A  +F  MR  RD V     ++T++ S LA     E++ 
Sbjct: 82  RDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIV-----SWTAMASCLAR-NGAERES 135

Query: 170 MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWT 229
           + +   +++SG          L + Y  C  +       L      V   +  +  L  T
Sbjct: 136 LLLIGEMLESGL---------LPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGLWGT 186

Query: 230 TMMTG------YVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE---------LKML 274
            +  G        +N  L +AR+  DG+ E   V W  LIS YV  E         L  L
Sbjct: 187 DIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFL 246

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
               + D +T +S+ISAC   G  RLG Q+H+  LR            V+  LV +Y K 
Sbjct: 247 EDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDA----CVSCGLVDMYAKS 302

Query: 335 G---KVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE------AKSLFEAMRERNLLS 385
                ++ A  +F +M + D++SW A++S YV +G+ +        + L E+++  ++  
Sbjct: 303 NIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITY 362

Query: 386 WTVM----------------------------------ISGLAQNGYGEEGLKLFSQMRL 411
            +++                                  +S  A++G  EE  ++F+Q+  
Sbjct: 363 SSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYE 422

Query: 412 EGFKPC---------------------DYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
                C                        FA  I++ A +G L  G+QLHA  + +G+ 
Sbjct: 423 RSMISCITEGRDAPLDHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFG 482

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
           S     N+L++MY+RCG +E A   FN + + + +SW +MI+ L +HG   RA+ L+  M
Sbjct: 483 SDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDM 542

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
           +  G+ P+ +T++ VLSAC+H GLV+EG+ YF +M   +G+ P  +HYA  +DLL R+G 
Sbjct: 543 ILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGL 602

Query: 571 FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630
             EA + I+ +P K  A +W+ LL  CR H NI++G  AA+ + +L P     YVLLSN+
Sbjct: 603 VKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNL 662

Query: 631 YANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQL 690
           YA+ G WD+ AR+R  MRD  + KE G SW+EV+N  H F   DT+HP AQ +Y  L+ L
Sbjct: 663 YADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTL 722

Query: 691 VLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRIC 750
           V E++ +GYVPDT  VLHDM  + KE  L  HSEK+AVAFGL+       +R+ KNLR+C
Sbjct: 723 VGEIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVC 782

Query: 751 GDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            DCH+A K+MSK   REI++RD  RFH  +DG+CSCG+YW
Sbjct: 783 ADCHSAIKYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  162 bits (410), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 123/483 (25%), Positives = 217/483 (44%), Gaps = 98/483 (20%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           DI   + LI   + + ++  AR++F+   L  +  V +  +I+ Y        A+E+F D
Sbjct: 187 DIAVGSALIDMLARNGDLASARKVFDG--LIEKTVVVWTLLISRYVQGECAEEAVEIFLD 244

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
              D  +PD +T +S++SA   +    +  +Q+H   ++ G      V   L+ +Y K  
Sbjct: 245 FLEDGFEPDRYTMSSMISACTEL-GSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKS- 302

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN-VGVA 258
                +    M  A +VF+ M + D +SWT +++GYV++           G+ EN V V 
Sbjct: 303 -----NIEQAMDYANKVFERMRKNDVISWTALISGYVQS-----------GVQENKVMVL 346

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
           +            +ML   I+ +  TY+S++ ACAN      G+QVHA+++++       
Sbjct: 347 FG-----------EMLNESIKPNHITYSSILKACANISDHDSGRQVHAHVIKSNQAAAH- 394

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS------------------------ 354
               V NALV++Y + G + EAR +FNQ+ ER ++S                        
Sbjct: 395 ---TVGNALVSMYAESGCMEEARRVFNQLYERSMISCITEGRDAPLDHRIGRMDMGISSS 451

Query: 355 -WNAILSAYVSAGLIDEAKSL-----------------------------------FEAM 378
            + +++SA  S G++ + + L                                   F  +
Sbjct: 452 TFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNEL 511

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
           ++RN++SWT MISGLA++GY E  L LF  M L G KP D  +   +++C+ +G +  G+
Sbjct: 512 KDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGK 571

Query: 439 QLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQ 496
           +    +    G    +     ++ + AR G+V+ A    N MP   D++ W  ++ A   
Sbjct: 572 EYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEMPLKADALVWKTLLGACRS 631

Query: 497 HGN 499
           H N
Sbjct: 632 HDN 634



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 103/209 (49%), Gaps = 3/209 (1%)

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE-RNLLSWTVMIS 391
           + G+    R +   + +RD V  N++L+ Y   G +  A+++F+ MR  R+++SWT M S
Sbjct: 65  RLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMAS 124

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG--Y 449
            LA+NG   E L L  +M   G  P  Y       +C           +   LVH    +
Sbjct: 125 CLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGLW 184

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
            + ++ G+ALI M AR G + +A  VF+ +     V W  +I+   Q      A+E++  
Sbjct: 185 GTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLD 244

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEG 538
            L++G  PDR T  +++SAC   G V+ G
Sbjct: 245 FLEDGFEPDRYTMSSMISACTELGSVRLG 273



 Score = 42.7 bits (99), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 84/214 (39%), Gaps = 51/214 (23%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +HA  + +GF     + N L+ +Y +   L  A   F+E+                 
Sbjct: 469 GQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNEL----------------- 511

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                           K R+ + + +MI+  + +     A+ LF DM    VKP++ T+ 
Sbjct: 512 ----------------KDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYI 555

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL--NALIS--VYVKCVSSPFVSSRSL 209
           +VLSA +            H  +V+ G   F S+   + LI    +  C+      S  L
Sbjct: 556 AVLSACS------------HVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARS-GL 602

Query: 210 MGAARRVFDEMP-ERDELSWTTMMTGYVKNDYLD 242
           +  A    +EMP + D L W T++     +D ++
Sbjct: 603 VKEALEFINEMPLKADALVWKTLLGACRSHDNIE 636


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 252/713 (35%), Positives = 375/713 (52%), Gaps = 102/713 (14%)

Query: 101 REMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA 160
           R MF K   K      +N++I  ++ + +   A+  F  MR+  + P+  TF   + + +
Sbjct: 39  RSMFGKYVDKT-SVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCS 97

Query: 161 LIVEEEKQCM--QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFD 218
            + +    C   Q+H      G G    V +ALI +Y KC                    
Sbjct: 98  SLYD---LCAGKQIHQQAFVFGYGSDIFVASALIDMYSKC-------------------- 134

Query: 219 EMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH----RELKML 274
                                YL+ AR+  D + E   V+W ++ISGYV     RE   L
Sbjct: 135 --------------------GYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFL 174

Query: 275 MLRIQL-DEFTYTS---------------VISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                L DE  Y                 VISACA   +  + + VH        K   E
Sbjct: 175 FKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHG----LAVKKGFE 230

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
             L V N L+  Y KCG+                               I  ++ +F+ M
Sbjct: 231 GCLAVGNTLMDAYAKCGE-------------------------------ISVSRKVFDGM 259

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG-FKPCDYAFAGAITSCAGLGALENG 437
            E ++ SW  +I+  AQNG   E   LFS M   G  +      +  + +CA  GAL+ G
Sbjct: 260 EETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIG 319

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           + +H Q+V    + +L  G +++ MY +CG VE A   F+ +   +  SW  M+A  G H
Sbjct: 320 KCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMH 379

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
           G+G  A++++ +M++ GI P+ ITF++VL+AC+HAGL+KEG  +F  M   + + PG +H
Sbjct: 380 GHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEH 439

Query: 558 YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           Y+  +DLL RAG   EA  +I  +  KP   +W +LL  CRIH N++LG  +A +LF+L 
Sbjct: 440 YSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLD 499

Query: 618 PHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAH 677
           P + G YVLLSN+YA+ GRWDD  R+R LM++ G+ K PG S +E   +VHVFLV D  H
Sbjct: 500 PSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEH 559

Query: 678 PEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPG 737
           P+ + +Y+YL++L ++++++GY+P+   VL+D++ ++K   L  HSEKLAVAFG+M    
Sbjct: 560 PQHEKIYEYLDELNVKLQEVGYMPNVTSVLYDVDVEEKGMVLRVHSEKLAVAFGIMNSVP 619

Query: 738 GATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           G+ ++++KNLRICGDCH A K +SK+V REIV+RD KRFHHF+DG CSCGDYW
Sbjct: 620 GSVIQIIKNLRICGDCHFAIKLISKIVNREIVIRDSKRFHHFKDGLCSCGDYW 672



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 118/497 (23%), Positives = 205/497 (41%), Gaps = 123/497 (24%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +H      G+     + + LID+Y K   L  AR LFDEIP+ ++V+ T++I+ Y  
Sbjct: 105 GKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQ 164

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
           ++  + A  +F +  L   D   Y+                    ++    V  D+    
Sbjct: 165 NERAREAVFLFKEFLLV--DETDYD--------------------EIVGVGVGVDSVLLG 202

Query: 154 SVLSALALI-VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            V+SA A + V+   +C  +H   VK G     +V N L+  Y KC           +  
Sbjct: 203 CVISACARVCVKSVTEC--VHGLAVKKGFEGCLAVGNTLMDAYAKC---------GEISV 251

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           +R+VFD M E D  SW +++  Y +N     A      M +   V +NA+          
Sbjct: 252 SRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAV---------- 301

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                      T ++V+ ACA+SG  ++GK +H  +++ E     E +L V  ++V +Y 
Sbjct: 302 -----------TLSAVLLACAHSGALQIGKCIHDQVVKMEL----EDNLVVGTSIVDMYC 346

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           KCG+V  AR  F+++  +++ SW                               TVM++G
Sbjct: 347 KCGRVEMARKAFDRLKRKNVKSW-------------------------------TVMVAG 375

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
              +G+G+E +K+F +M   G KP    F   + +C+  G L+ G     ++        
Sbjct: 376 YGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKM-------- 427

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
                                C F+  P ++   ++ M+  LG+ G    A  L ++M  
Sbjct: 428 --------------------KCEFDVEPGIE--HYSCMVDLLGRAGYLKEAYGLIQEM-- 463

Query: 513 EGILPDRITFLTVLSAC 529
             + PD I + ++L AC
Sbjct: 464 -KVKPDFIVWGSLLGAC 479


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/624 (38%), Positives = 351/624 (56%), Gaps = 67/624 (10%)

Query: 167 KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDEL 226
           +Q +Q+H  ++K G      V + LI++Y K     F         + +VFDE P++   
Sbjct: 42  RQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLF---------SLQVFDETPKKSST 92

Query: 227 SWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYT 286
           +W+++++ + +N+    A +F                        +ML   ++ D+  Y 
Sbjct: 93  TWSSVISAFAQNEAPLLALQFFR----------------------RMLNDGVRPDDHIYP 130

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
           S   AC       +GK VH   ++T         + V ++LV +Y KCG+          
Sbjct: 131 SATKACGFLRRSDVGKSVHCLAVKTGYYC----DVFVGSSLVDMYAKCGE---------- 176

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
                                I +A+ LF+ M ERN++SW+ MI G AQ   G E L LF
Sbjct: 177 ---------------------IGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLF 215

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
            Q  +E     D+ F+  I  C+    LE G+ +H   +   +DSS   G+ALI++Y++C
Sbjct: 216 KQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKC 275

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           GV+E A  VF+ +P  +   WN+M+ A  QH +  R   L+E+M   G+ P+ I+FL+VL
Sbjct: 276 GVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVL 335

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
            AC+HAGLV++GR YF  M   YGI P  +HYA  +DLL RAGK  EA  VI  +P +P+
Sbjct: 336 YACSHAGLVEKGREYFSLMR-DYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPT 394

Query: 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKL 646
             +W ALL GCRIH + ++    A+++ ++    +G +VLLSN YA  GR+++AAR+RK+
Sbjct: 395 ESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKM 454

Query: 647 MRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFV 706
           +RDRGVKKE G SW+E  NKVH F   D +H +   +Y+ LE+L  EM K GYV DT FV
Sbjct: 455 LRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSFV 514

Query: 707 LHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGR 766
           L  ++ ++K   +  HSE+LA+AFGL+  P G  +RV+KNLR+CGDCH A KFMSK  GR
Sbjct: 515 LRAVDGEEKNETIRYHSERLAIAFGLITFPPGRPIRVMKNLRVCGDCHAAIKFMSKCCGR 574

Query: 767 EIVVRDGKRFHHFRDGKCSCGDYW 790
            ++VRD  RFH F DGKCSCGDYW
Sbjct: 575 VLIVRDNNRFHRFEDGKCSCGDYW 598



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/428 (26%), Positives = 197/428 (46%), Gaps = 72/428 (16%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           LI  YS +     + ++F++TP K   T  ++++I+A++ N     A++ FR M  D V+
Sbjct: 66  LINLYSKTQLPLFSLQVFDETPKKSSTT--WSSVISAFAQNEAPLLALQFFRRMLNDGVR 123

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           PD+  + S   A   +   +     +HC  VK+G      V ++L+ +Y KC        
Sbjct: 124 PDDHIYPSATKACGFLRRSDVG-KSVHCLAVKTGYYCDVFVGSSLVDMYAKC-------- 174

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVK-NDYLDAAREFLDGMSENVGVAWNALISG 265
              +G AR +FDEMPER+ +SW+ M+ GY + +D ++A   F   + E+V V        
Sbjct: 175 -GEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDV-------- 225

Query: 266 YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
                          ++FT++SVI  C++S    LGK +H   L    K + + S  V +
Sbjct: 226 ---------------NDFTFSSVIRVCSSSTFLELGKLIHGLCL----KMSFDSSSFVGS 266

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
           AL++LY KCG +  A  +F+++P R+L  WN++L A                        
Sbjct: 267 ALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIA------------------------ 302

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
                   AQ+ + +    LF +M   G KP   +F   + +C+  G +E GR+  + + 
Sbjct: 303 -------CAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHAGLVEKGREYFSLMR 355

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGNGARAI 504
             G +       +L+ +  R G ++ A  V   MP   + S W A++     H +   A 
Sbjct: 356 DYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAA 415

Query: 505 ELYEQMLK 512
            + +++L+
Sbjct: 416 FVADRILE 423



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 161/366 (43%), Gaps = 52/366 (14%)

Query: 298 FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA 357
            R G Q+HA++L+   +  P     V++ L+ LY K      +  +F++ P++   +W++
Sbjct: 41  LRQGLQLHAHILKFGLQTIP----LVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSS 96

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
           ++SA+                               AQN      L+ F +M  +G +P 
Sbjct: 97  VISAF-------------------------------AQNEAPLLALQFFRRMLNDGVRPD 125

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
           D+ +  A  +C  L   + G+ +H   V +GY   +  G++L+ MYA+CG +  A  +F+
Sbjct: 126 DHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFD 185

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKE 537
            MP  + VSW+ MI    Q  +G  A+ L++Q L E +  +  TF +V+  C+ +  ++ 
Sbjct: 186 EMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLEL 245

Query: 538 GRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
           G+     +HG              +  I L  + G    A  V D +P + +  +W ++L
Sbjct: 246 GK----LIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTR-NLGLWNSML 300

Query: 595 AGCRIHGNIDLGIQAAEQLFQLMPH---HAGTYVLLSNMYA--NLGRWDDAARVRKLMRD 649
             C  H +     Q    LF+ M +          LS +YA  + G  +       LMRD
Sbjct: 301 IACAQHAH----TQRVFGLFEEMGNVGMKPNFISFLSVLYACSHAGLVEKGREYFSLMRD 356

Query: 650 RGVKKE 655
            G++ E
Sbjct: 357 YGIEPE 362



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 98/418 (23%), Positives = 172/418 (41%), Gaps = 88/418 (21%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
           S + +SVH   + +G+     + + L+D+Y K  ++  AR LFDE+P+ ++V+       
Sbjct: 142 SDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVS------- 194

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
                                     ++ MI  Y+   +G  A+ LF+    +DV  ++F
Sbjct: 195 --------------------------WSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDF 228

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           TF+SV+   +     E   + +H   +K      + V +ALIS+Y KC          ++
Sbjct: 229 TFSSVIRVCSSSTFLELGKL-IHGLCLKMSFDSSSFVGSALISLYSKC---------GVI 278

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
             A +VFDE+P R+   W +M+    ++ +        + M  NVG+  N +        
Sbjct: 279 EGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMG-NVGMKPNFI-------- 329

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
                        ++ SV+ AC+++GL   G++  + +     +P  E       +LV L
Sbjct: 330 -------------SFLSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHY----ASLVDL 372

Query: 331 YWKCGKVNEARDIFNQMPERDLVS-WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
             + GK+ EA  +  QMP R   S W A+L+        D   + F A R   + S +  
Sbjct: 373 LGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHK--DTEMAAFVADRILEMDSSSSG 430

Query: 390 ISGLAQNGYG-----EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
           +  L  N Y      EE  ++   +R  G K              GL  +E G ++H 
Sbjct: 431 LHVLLSNAYAAAGRYEEAARMRKMLRDRGVK-----------KETGLSWVEEGNKVHT 477



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 85/188 (45%), Gaps = 27/188 (14%)

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
           +L  G QLHA ++  G  +     + LI +Y++  +   +  VF+  P   S +W+++I+
Sbjct: 40  SLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVIS 99

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN-----------HAGLVKEGRRY 541
           A  Q+     A++ + +ML +G+ PD   + +   AC            H   VK G  Y
Sbjct: 100 AFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTG-YY 158

Query: 542 FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
            +   G           +  +D+  + G+  +A+ + D +P + +   W  ++ G   + 
Sbjct: 159 CDVFVG-----------SSLVDMYAKCGEIGDARHLFDEMP-ERNVVSWSGMIYG---YA 203

Query: 602 NIDLGIQA 609
            +D G++A
Sbjct: 204 QLDDGVEA 211


>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 934

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 249/717 (34%), Positives = 395/717 (55%), Gaps = 79/717 (11%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + ++    +L++ YS +   + A  +F+K  ++ RD + +N+M+ ++  N N   A+EL 
Sbjct: 293 ESNVCVCNSLLSMYSQAGKSEDAEFVFHK--MRERDLISWNSMMASHVDNGNYPRALELL 350

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
            +M +     +  TFT+ LSA   +    +    +H  V+  G      + NAL+++Y K
Sbjct: 351 IEMLQTRKATNYVTFTTALSACYNL----ETLKIVHAFVILLGLHHNLIIGNALVTMYGK 406

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
             S         M AA+RV   MP+RDE++W  ++ G+  N   +AA E  + + E  GV
Sbjct: 407 FGS---------MAAAQRVCKIMPDRDEVTWNALIGGHADNKEPNAAIEAFNLLREE-GV 456

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISA-CANSGLFRLGKQVHAYLLRTEAKPT 316
             N +                     T  +++SA  +   L   G  +HA+++       
Sbjct: 457 PVNYI---------------------TIVNLLSAFLSPDDLLDHGMPIHAHIVVAGF--- 492

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
            E    V ++L+T+Y +CG +N +  IF+ +  ++  +WNAILSA               
Sbjct: 493 -ELETFVQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSAN-------------- 537

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
                            A  G GEE LKL  +MR +G     ++F+ A      L  L+ 
Sbjct: 538 -----------------AHYGPGEEALKLIIKMRNDGIHLDQFSFSVAHAIIGNLTLLDE 580

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS---VSWNAMIAA 493
           G+QLH+ ++  G++S+    NA + MY +CG ++    VF  +P   S    SWN +I+A
Sbjct: 581 GQQLHSLIIKHGFESNDYVLNATMDMYGKCGEIDD---VFRILPQPRSRSQRSWNILISA 637

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
           L +HG   +A E + +ML  G+ PD +TF+++LSAC+H GLV EG  YF +M   +G+P 
Sbjct: 638 LARHGFFQQAREAFHEMLDLGLRPDHVTFVSLLSACSHGGLVDEGLAYFSSMSTKFGVPT 697

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
           G +H    IDLL RAGK +EA++ I+ +P  P+  +W +LLA C+IHGN++L  +AA++L
Sbjct: 698 GIEHCVCIIDLLGRAGKLTEAENFINKMPVPPTDLVWRSLLAACKIHGNLELARKAADRL 757

Query: 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVD 673
           F+L       YVL SN+ A+  RW D   VRK M    +KK+P CSW+++ N+V  F + 
Sbjct: 758 FELDSSDDSAYVLYSNVCASTRRWRDVENVRKQMESHNIKKKPACSWVKLKNQVTTFGMG 817

Query: 674 DTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLM 733
           D  HP+   +Y  LE+L   +R+ GY+PDT + L D + +QKE+ L  HSE++A+AFGL+
Sbjct: 818 DQYHPQNAEIYAKLEELKKIIREAGYMPDTSYSLQDTDEEQKEHNLWNHSERIALAFGLI 877

Query: 734 KLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
               G+ +R+ KNLR+CGDCH+ FK +S+++GR+I++RD  RFHHF  GKCSC DYW
Sbjct: 878 NSSEGSPLRIFKNLRVCGDCHSVFKMVSQIIGRKIILRDAYRFHHFSSGKCSCSDYW 934



 Score =  160 bits (405), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 133/513 (25%), Positives = 230/513 (44%), Gaps = 106/513 (20%)

Query: 17  ASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEI 76
           AS +  CD    +T   A  VHAH+I  G      +   L+  Y     +     +F EI
Sbjct: 62  ASLVTACDRSGCMTEG-AFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEI 120

Query: 77  PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
            +P+IV+ T+L+  Y+ +  VK                                   + +
Sbjct: 121 EEPNIVSWTSLMVGYAYNGCVK---------------------------------EVMSV 147

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           +R +RRD V  +     +V+ +  ++V++     Q+  +V+KSG     SV N+LIS++ 
Sbjct: 148 YRRLRRDGVYCNENAMATVIRSCGVLVDKMLG-YQVLGSVIKSGLDTTVSVANSLISMFG 206

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
            C S         +  A  VFD+M ERD +SW +++T  V N + + + E+   M     
Sbjct: 207 NCDS---------IEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMR---- 253

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
                    Y H          + D  T ++++  C ++   R G+ +H  ++    K  
Sbjct: 254 ---------YTHA---------KTDYITISALLPVCGSAQNLRWGRGLHGMVV----KSG 291

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
            E ++ V N+L+++Y + GK  +A  +F++M ERDL+SWN++++++V             
Sbjct: 292 LESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHV------------- 338

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY-AFAGAITSCAGLGALE 435
                              NG     L+L  +M L+  K  +Y  F  A+++C  L  L 
Sbjct: 339 ------------------DNGNYPRALELLIEM-LQTRKATNYVTFTTALSACYNLETL- 378

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
             + +HA ++  G   +L  GNAL+TMY + G + AA  V   MP+ D V+WNA+I    
Sbjct: 379 --KIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHA 436

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
            +     AIE +  + +EG+  + IT + +LSA
Sbjct: 437 DNKEPNAAIEAFNLLREEGVPVNYITIVNLLSA 469



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 121/475 (25%), Positives = 204/475 (42%), Gaps = 99/475 (20%)

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A+ VFD+MPER+E SW  +M+G+V+  +   A +F                  + H    
Sbjct: 11  AQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQF------------------FCH---- 48

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGK-QVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
           ML   ++   +   S+++AC  SG    G  QVHA+++                      
Sbjct: 49  MLEHGVRPSSYVAASLVTACDRSGCMTEGAFQVHAHVI---------------------- 86

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            KCG    A D+F            ++L  Y + G + E   +F+ + E N++SWT ++ 
Sbjct: 87  -KCGL---ACDVF---------VGTSLLHFYGTFGWVAEVDMVFKEIEEPNIVSWTSLMV 133

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
           G A NG  +E + ++ ++R +G    + A A  I SC  L     G Q+   ++ SG D+
Sbjct: 134 GYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGYQVLGSVIKSGLDT 193

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
           ++S  N+LI+M+  C  +E A+CVF+ M   D++SWN++I A   +G+  +++E + QM 
Sbjct: 194 TVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMR 253

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG---PYGIPPGEDHYARFIDLLCRA 568
                 D IT   +L  C  A  ++ GR     +HG     G+          + +  +A
Sbjct: 254 YTHAKTDYITISALLPVCGSAQNLRWGR----GLHGMVVKSGLESNVCVCNSLLSMYSQA 309

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ------------- 615
           GK  +A+ V   +  +     W +++A    +GN    ++   ++ Q             
Sbjct: 310 GKSEDAEFVFHKMRERDLIS-WNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTA 368

Query: 616 ---------LMPHHAGTYVL-----------LSNMYANLGRWDDAARVRKLMRDR 650
                    L   HA   +L           L  MY   G    A RV K+M DR
Sbjct: 369 LSACYNLETLKIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDR 423



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 83/169 (49%), Gaps = 1/169 (0%)

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
           Y   G I+ A+ +F+ M ERN  SW  ++SG  + G+ ++ ++ F  M   G +P  Y  
Sbjct: 2   YSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYVA 61

Query: 422 AGAITSCAGLGALENGR-QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
           A  +T+C   G +  G  Q+HA ++  G    +  G +L+  Y   G V   + VF  + 
Sbjct: 62  ASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIE 121

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
             + VSW +++     +G     + +Y ++ ++G+  +     TV+ +C
Sbjct: 122 EPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSC 170



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 45/77 (58%)

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           MY++ G +E A  VF+ MP  +  SWN +++   + G   +A++ +  ML+ G+ P    
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 522 FLTVLSACNHAGLVKEG 538
             ++++AC+ +G + EG
Sbjct: 61  AASLVTACDRSGCMTEG 77


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/607 (38%), Positives = 353/607 (58%), Gaps = 57/607 (9%)

Query: 191 LISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDG 250
           LI +Y KC S         +G A  VFDEMPER+ +SWT M++ Y +  Y   A + L+ 
Sbjct: 284 LIVLYTKCDS---------LGDAHNVFDEMPERNVVSWTAMISAYSQRGY---ASQALNL 331

Query: 251 MSENVGVAWNALISGYVHRELKML-----MLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
              +V ++   +   Y   +LK+       +  + +EFT+ +V+++C +S  F LG+Q+H
Sbjct: 332 FFADVKISLTGV---YAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIH 388

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365
           + ++    K   E  + V ++L+ +Y K GK++EAR +F  +PERD+VS  AI+S Y   
Sbjct: 389 SLII----KLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQL 444

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425
           GL +EA                               L+LF +++ EG K     + G +
Sbjct: 445 GLDEEA-------------------------------LELFRRLQGEGMKSNYVTYTGVL 473

Query: 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV 485
           T+ +GL AL+ G+Q+H  ++ S   S +   N+LI MY++CG +  +  +F+TM     +
Sbjct: 474 TALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVI 533

Query: 486 SWNAMIAALGQHGNGARAIELYEQMLKE-GILPDRITFLTVLSACNHAGLVKEGRRYFET 544
           SWNAM+    +HG G   ++L+  M +E  + PD +T L VLS C+H GL  +G   F  
Sbjct: 534 SWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFND 593

Query: 545 M-HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNI 603
           M  G   + P  +HY   +DLL R+G+  EA + I  +PF+P+A IW +LL  CR+H N+
Sbjct: 594 MSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSNV 653

Query: 604 DLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEV 663
           D+G  A +QL ++ P +AG YV+LSN+YA+ GRW+D + +R LM  + V KEPG S IE+
Sbjct: 654 DIGEFAGQQLLEIEPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSSIEL 713

Query: 664 DNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHS 723
           D  +H F   D +HP  + +   +++L    +++GYVPD   VLHD++ +QKE  L  HS
Sbjct: 714 DQVLHTFHASDRSHPRREEICMKVKELSTSFKEVGYVPDLSCVLHDVDEEQKEKILLGHS 773

Query: 724 EKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGK 783
           EKLA++FGL+  P    +RV+KNLRIC DCHN  K++SKV GRE+ +RD  RFH    GK
Sbjct: 774 EKLALSFGLIASPASVPIRVIKNLRICVDCHNFAKYISKVYGREVSLRDKNRFHRIVGGK 833

Query: 784 CSCGDYW 790
           CSC DYW
Sbjct: 834 CSCEDYW 840



 Score =  150 bits (378), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 175/340 (51%), Gaps = 23/340 (6%)

Query: 268 HRELKMLMLRIQLDEFT-----YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
           H  L+  +L++ L  F      Y ++++ C N   FR G++VHA++++T   P    S+ 
Sbjct: 224 HIHLQQPLLQMALHGFNMKFENYNAILNECVNKRAFREGQRVHAHMIKTRYLP----SVF 279

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
           +   L+ LY KC  + +A ++F++MPER++VSW A++SAY   G   +A +LF A     
Sbjct: 280 LRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFA----- 334

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMR-LEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
                + ++G+    Y  + LKL +  R     +P ++ FA  +TSC        GRQ+H
Sbjct: 335 --DVKISLTGV----YAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIH 388

Query: 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGA 501
           + ++   Y+  +  G++L+ MYA+ G +  A  VF  +P  D VS  A+I+   Q G   
Sbjct: 389 SLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDE 448

Query: 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF 561
            A+EL+ ++  EG+  + +T+  VL+A +    +  G++    +     IP         
Sbjct: 449 EALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRS-EIPSFVVLQNSL 507

Query: 562 IDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
           ID+  + G  + ++ + D++ ++ +   W A+L G   HG
Sbjct: 508 IDMYSKCGNLTYSRRIFDTM-YERTVISWNAMLVGYSKHG 546



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 129/476 (27%), Positives = 208/476 (43%), Gaps = 95/476 (19%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + VHAHMI + + P   +  RLI +Y K   L  A  +FDE+P+ ++V+ T +I+AYS 
Sbjct: 262 GQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQ 321

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                 A  +F    +K+  T  Y       S+ +      E           P+ FTF 
Sbjct: 322 RGYASQALNLFF-ADVKISLTGVYAIDKLKLSNPNRPWVCTE-----------PNEFTFA 369

Query: 154 SVL----SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           +VL    S+L  I+       Q+H  ++K        V ++L+ +Y K            
Sbjct: 370 TVLTSCTSSLGFILGR-----QIHSLIIKLNYEDHVFVGSSLLDMYAK---------DGK 415

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +  AR VF+ +PERD +S T +++GY +    + A E    +          + S YV  
Sbjct: 416 IHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQ------GEGMKSNYV-- 467

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
                         TYT V++A +      LGKQVH ++LR+E    P F + + N+L+ 
Sbjct: 468 --------------TYTGVLTALSGLAALDLGKQVHNHVLRSE---IPSFVV-LQNSLID 509

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL---SW 386
           +Y KCG +  +R IF+ M ER ++SWNA+L  Y   G   E   LF  MRE   +   S 
Sbjct: 510 MYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSV 569

Query: 387 TVM--ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
           T++  +SG +  G  ++GL +F+ M            +G I             ++  ++
Sbjct: 570 TILAVLSGCSHGGLEDKGLNIFNDMS-----------SGKI-------------EVEPKM 605

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGN 499
            H G          ++ +  R G VE A      MP   + + W +++ A   H N
Sbjct: 606 EHYG---------CVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSN 652



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 153/358 (42%), Gaps = 67/358 (18%)

Query: 5   NADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSL 64
           N  ++ T  N +     L    + +   L R +H+ +I   ++    + + L+D+Y K  
Sbjct: 355 NRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDG 414

Query: 65  KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
           K+  ART+F+ +P+ D+V+ T +I+ Y+    + L  E                      
Sbjct: 415 KIHEARTVFECLPERDVVSCTAIISGYA---QLGLDEE---------------------- 449

Query: 125 SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLF 184
                   A+ELFR ++ + +K +  T+T VL+AL+ +   +    Q+H  V++S    F
Sbjct: 450 --------ALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLG-KQVHNHVLRSEIPSF 500

Query: 185 TSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAA 244
             + N+LI +Y KC +  +         +RR+FD M ER  +SW  M+ GY K+      
Sbjct: 501 VVLQNSLIDMYSKCGNLTY---------SRRIFDTMYERTVISWNAMLVGYSKHGEGREV 551

Query: 245 REFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304
            +    M E                       +++ D  T  +V+S C++ GL   G  +
Sbjct: 552 LKLFTLMREET---------------------KVKPDSVTILAVLSGCSHGGLEDKGLNI 590

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
              +  +  K   E  +     +V L  + G+V EA +   +MP E     W ++L A
Sbjct: 591 FNDM--SSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGA 646


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 242/705 (34%), Positives = 377/705 (53%), Gaps = 78/705 (11%)

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD-VKPDNF 150
           ++S ++  A  +F   P   R    YN +I ++    +   A+ LF +M  D  V PD  
Sbjct: 113 TSSAHLSYAIRLFRLGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQH 172

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           T  + + + + + +       +     K G  +   VLN+LI +Y  C           +
Sbjct: 173 TVANTVKSCSRMCDLSVG-RGVQAYAFKRGFMVDQFVLNSLIHMYASCGD---------V 222

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
            AA  +F  +  +  ++W  M+ GYVKN       E   G                    
Sbjct: 223 VAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKG-------------------- 262

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY-----LLRTEAKPTPEFSLPVNN 325
             ML +R   DE T  SV +AC   G   LG+ +  Y     +LR+    T         
Sbjct: 263 --MLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLAT--------- 311

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
           ALV +Y KCG+                               +D+A+ LF+ M  R++++
Sbjct: 312 ALVDMYAKCGE-------------------------------LDKARRLFDRMHSRDVVA 340

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
           W+ MISG  Q+    E L +F++M+     P D      +++CA LGALE G+ +H+ + 
Sbjct: 341 WSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIR 400

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIE 505
                 ++  G AL+  YA+CG ++ A   F +MP  ++ +W A+I  +  +G    A+E
Sbjct: 401 RKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALE 460

Query: 506 LYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLL 565
           L+  ML+  I P  +TF+ VL AC+H  LV+EGRR+F +M   YGI P  +HY   +DLL
Sbjct: 461 LFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLL 520

Query: 566 CRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYV 625
            RAG   EA   I ++P +P+A +W ALL+ C +H N+++G +A +Q+  L P H+G Y+
Sbjct: 521 GRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYI 580

Query: 626 LLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYK 685
           LLSN YA++G+W +AA VRK M+++GV+K PGCS IE++  +  F  +D+ HP+   +Y+
Sbjct: 581 LLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYE 640

Query: 686 YLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLK 745
            + +++  ++ +GY+P+T     D++  +K+ ++S HSEKLA+AFGLMK   GAT+R+ K
Sbjct: 641 KVHEMIENIKMVGYIPNTADARLDVDEYEKQVSVSHHSEKLAIAFGLMKSRPGATIRLSK 700

Query: 746 NLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           NLR+C DCH+A K +SKV  REI+VRD  RFHHF+DG CSC DYW
Sbjct: 701 NLRVCIDCHSATKLISKVYNREIIVRDRNRFHHFKDGLCSCNDYW 745



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 125/511 (24%), Positives = 203/511 (39%), Gaps = 117/511 (22%)

Query: 11  TLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYAR 70
           T+AN   S  ++CD       S+ R V A+    GF   + ++N LI +Y     +V A 
Sbjct: 173 TVANTVKSCSRMCD------LSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAH 226

Query: 71  TLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNG 130
            LF  +                                 +++  + +NAMI  Y  N + 
Sbjct: 227 VLFHTV---------------------------------QVKGVIAWNAMIAGYVKNGDW 253

Query: 131 HAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS--VL 188
              +E+F+ M       D  T  SV +A   + +     +           G+  S  + 
Sbjct: 254 KEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDAN---LGQWIAEYAEEKGMLRSRNLA 310

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
            AL+ +Y KC           +  ARR+FD M  RD ++W+ M++GY ++D     RE L
Sbjct: 311 TALVDMYAKC---------GELDKARRLFDRMHSRDVVAWSAMISGYTQSDR---CREAL 358

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
              +E  G   N                    ++ T  SV+SACA  G    GK VH+Y+
Sbjct: 359 AIFNEMQGTEVNP-------------------NDVTMVSVLSACAVLGALETGKWVHSYI 399

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
            R   K  P  ++ +  ALV  Y KCG + +A   F  MP R+  +W A++    S G  
Sbjct: 400 RR---KDLP-LTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRS 455

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
            EA  LF +M E N+                               +P D  F G + +C
Sbjct: 456 REALELFSSMLEANI-------------------------------EPTDVTFIGVLLAC 484

Query: 429 AGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVS 486
           +    +E GR+    +    G    +     ++ +  R G+++ A      MP   ++V 
Sbjct: 485 SHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVV 544

Query: 487 WNAMIAALGQHGNGARAIELYEQMLKEGILP 517
           W A+++A   H N    +E+ E+ LK+ I+P
Sbjct: 545 WRALLSACTVHKN----VEIGEEALKQ-IVP 570


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 248/683 (36%), Positives = 360/683 (52%), Gaps = 95/683 (13%)

Query: 131 HAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM---------QMHCTVVKSGT 181
           H AI LF  MR  D        +SVL++L   +   K C           +H   ++SG 
Sbjct: 36  HHAIALFLRMRASDPAA---ACSSVLTSLPGAL---KSCAALGLRALGASLHALALRSGA 89

Query: 182 GLFTSVLNALISVYVKCVSSPFVS-----SRSLMGAARRVFDEMPERDELSWTTMMTGYV 236
                  NAL+++Y K  + P  S     S  ++ + R+VFDEMPE+D            
Sbjct: 90  FADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDV----------- 138

Query: 237 KNDYLDAAREFLDGMSENVGVAWNALISGYV----HRELKMLMLRI-----QLDEFTYTS 287
                               V+WN L+ G      H E   L+  +     + D FT +S
Sbjct: 139 --------------------VSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSS 178

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           V+   A     R G ++H +  R          + V ++L+ +Y  C + + +  +F+ +
Sbjct: 179 VLPIFAEGADVRRGMELHGFATRNGFHD----DVFVGSSLIDMYANCTRTDYSVKVFDNL 234

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
           P RD     AIL                          W  M++G AQNG  +E L LF 
Sbjct: 235 PVRD-----AIL--------------------------WNSMLAGCAQNGSVDEALGLFR 263

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467
           +M   G KP    F+  I +C  L +L  G+QLHA ++  G+D ++   ++LI MY +CG
Sbjct: 264 RMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCG 323

Query: 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
            V  A  +F+ + + D VSW AMI     HG    A+ L+++M    + P+ ITFL VL+
Sbjct: 324 NVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLT 383

Query: 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSA 587
           AC+HAGLV +G +YF +M   YGI P  +H+A   D L R GK  EA + I  +  KP+A
Sbjct: 384 ACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTA 443

Query: 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647
            +W  LL  C++H N  L  + A+++F L P   G++++LSN Y++ GRW++AA +RK M
Sbjct: 444 SVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILSNTYSSSGRWNEAAHLRKSM 503

Query: 648 RDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVL 707
           R +G++KEP CSWIEV NK HVF+  D +HP  + +   L     +M + GYVP+T  V 
Sbjct: 504 RKKGMQKEPACSWIEVKNKQHVFVAHDKSHPWYERIIDALNVFSEQMVRQGYVPNTDDVF 563

Query: 708 HDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGRE 767
            D+E +QK   L  HSEKLA+ FG++  P G T+RV+KNLR+C DCH   KF+SK+VGRE
Sbjct: 564 QDIEEEQKNSVLCGHSEKLAIVFGIISTPPGTTIRVMKNLRVCVDCHTVTKFISKIVGRE 623

Query: 768 IVVRDGKRFHHFRDGKCSCGDYW 790
           IV+RD  RFHHF+DG CSCGD+W
Sbjct: 624 IVMRDANRFHHFKDGICSCGDFW 646



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 121/482 (25%), Positives = 209/482 (43%), Gaps = 88/482 (18%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           +L  S+HA  + SG        N L+++YCK             +P P   +     +A 
Sbjct: 75  ALGASLHALALRSGAFADRFAANALLNLYCK-------------LPAPPSHSPEMDGSAV 121

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                ++  R++F++ P K  D V +N ++   + +     A+ L R+M RD  KPD+FT
Sbjct: 122 V----LESVRKVFDEMPEK--DVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFT 175

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
            +SVL   A   +  +  M++H    ++G      V ++LI +Y  C  + +        
Sbjct: 176 LSSVLPIFAEGADVRRG-MELHGFATRNGFHDDVFVGSSLIDMYANCTRTDY-------- 226

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            + +VFD +P RD + W +M+ G  +N  +D A                           
Sbjct: 227 -SVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFR---------------------- 263

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
           +ML   I+    T++S+I AC N     LGKQ+HAY++R       + ++ ++++L+ +Y
Sbjct: 264 RMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGF----DGNVFISSSLIDMY 319

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            KCG V+ AR IF+++   D+VSW A++  +                             
Sbjct: 320 CKCGNVSIARRIFDRIQSPDIVSWTAMIMGH----------------------------- 350

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG-RQLHAQLVHSGYD 450
             A +G   E L LF +M L   KP    F   +T+C+  G ++ G +  ++   H G  
Sbjct: 351 --ALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIV 408

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGNGARAIELYEQ 509
            SL    AL     R G +E A    + M    + S W+ ++ A   H N   A E+ ++
Sbjct: 409 PSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKK 468

Query: 510 ML 511
           + 
Sbjct: 469 IF 470



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 113/257 (43%), Gaps = 32/257 (12%)

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRL-EGFKPCD---YAFAGAITSCAGLGALENGRQL 440
           SW   I   A  G     + LF +MR  +    C     +  GA+ SCA LG    G  L
Sbjct: 21  SWAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASL 80

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCG--------------VVEAANCVFNTMPNVDSVS 486
           HA  + SG  +   A NAL+ +Y +                V+E+   VF+ MP  D VS
Sbjct: 81  HALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVS 140

Query: 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY--FET 544
           WN ++    + G    A+ L  +M ++G  PD  T  +VL        V+ G     F T
Sbjct: 141 WNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFAT 200

Query: 545 MHGPYGIPPGEDHY--ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
            +G +     +D +  +  ID+     +   +  V D+LP +  A +W ++LAGC  +G+
Sbjct: 201 RNGFH-----DDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR-DAILWNSMLAGCAQNGS 254

Query: 603 IDLGIQAAEQLFQLMPH 619
           +D     A  LF+ M H
Sbjct: 255 VD----EALGLFRRMLH 267



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 4/120 (3%)

Query: 9   IRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVY 68
           I+ +   ++S +  C   N  +  L + +HA++I  GF     I + LID+YCK   +  
Sbjct: 270 IKPMPVTFSSLIPACG--NLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSI 327

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLK--MRDTVFYNAMITAYSH 126
           AR +FD I  PDIV+ T +I  ++     + A  +F++  L     + + + A++TA SH
Sbjct: 328 ARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSH 387


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 252/708 (35%), Positives = 382/708 (53%), Gaps = 74/708 (10%)

Query: 86   TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
            TL+  Y+ +     A  +F + P K  D + +N+++ ++ ++     A+ L   M     
Sbjct: 391  TLLRMYAGAGRSVEANLVFKQMPTK--DLISWNSLMASFVNDGRSLDALGLLCSMISSGK 448

Query: 146  KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVS 205
              +  TFTS L+A       EK  + +H  VV SG      + NAL+S+Y K        
Sbjct: 449  SVNYVTFTSALAACFTPDFFEKGRI-LHGLVVVSGLFYNQIIGNALVSMYGKI------- 500

Query: 206  SRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265
                M  +RRV  +MP RD ++W  ++ GY +++  D A      M    GV+ N +   
Sbjct: 501  --GEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVE-GVSSNYI--- 554

Query: 266  YVHRELKMLMLRIQLDEFTYTSVISACANSG-LFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
                              T  SV+SAC   G L   GK +HAY++    +        V 
Sbjct: 555  ------------------TVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEH----VK 592

Query: 325  NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
            N+L+T+Y KCG ++ ++D+FN +  R++++WNA+L+A                       
Sbjct: 593  NSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAAN---------------------- 630

Query: 385  SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
                     A +G+GEE LKL S+MR  G     ++F+  +++ A L  LE G+QLH   
Sbjct: 631  ---------AHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLA 681

Query: 445  VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV--SWNAMIAALGQHGNGAR 502
            V  G++      NA   MY++CG  E    V    P+V+    SWN +I+ALG+HG    
Sbjct: 682  VKLGFEHDSFIFNAAADMYSKCG--EIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEE 739

Query: 503  AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562
                + +ML+ GI P  +TF+++L+AC+H GLV +G  Y++ +   +G+ P  +H    I
Sbjct: 740  VCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVI 799

Query: 563  DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622
            DLL R+G+ +EA+  I  +P KP+  +W +LLA C+IHGN+D G +AAE L +L P    
Sbjct: 800  DLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDS 859

Query: 623  TYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQA 682
             YVL SNM+A  GRW+D   VRK M  + +KK+  CSW+++ +KV  F + D  HP+   
Sbjct: 860  VYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTME 919

Query: 683  VYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVR 742
            +Y  LE +   +++ GYV DT   L D + +QKE+ L  HSE+LA+A+ LM  P G+TVR
Sbjct: 920  IYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVR 979

Query: 743  VLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            + KNLRIC DCH+ +KF+S+V+GR IV+RD  RFHHF  G CSC DYW
Sbjct: 980  IFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 1027



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 167/704 (23%), Positives = 284/704 (40%), Gaps = 191/704 (27%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           +  R+VHA  +    +      N LI++Y K  ++  AR LFD +P              
Sbjct: 89  TTGRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMP-------------- 134

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                              +R+ V +N M++           +E FR M    +KP +F 
Sbjct: 135 -------------------VRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 175

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             S+++A        ++ +Q+H  V KSG          L  VYV            L+ 
Sbjct: 176 IASLVTACGRSGSMFREGVQVHGFVAKSGL---------LSDVYVSTAILHLYGVYGLVS 226

Query: 212 AARRVFDEMPERDELSWTTMMTGY------------------------------------ 235
            +R+VF+EMP+R+ +SWT++M GY                                    
Sbjct: 227 CSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDESLGRQIIGQVVKSGLESKLA 286

Query: 236 VKNDYL---------DAAREFLDGMSENVGVAWNALISGYVHR-------ELKMLMLRI- 278
           V+N  +         D A    D MSE   ++WN++ + Y           +  LM R  
Sbjct: 287 VENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFH 346

Query: 279 -QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
            +++  T ++++S   +    + G+ +H  +++          + V N L+ +Y   G+ 
Sbjct: 347 DEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSV----VCVCNTLLRMYAGAGRS 402

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAG-----------LIDEAKSL------------ 374
            EA  +F QMP +DL+SWN++++++V+ G           +I   KS+            
Sbjct: 403 VEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAAC 462

Query: 375 -----FEAMRERNLLSWTVMISGLAQN--------------------------------- 396
                FE  R   +L   V++SGL  N                                 
Sbjct: 463 FTPDFFEKGR---ILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVV 519

Query: 397 -------GYGEE-----GLKLFSQMRLEGFKPCDYAFAGAITSCAGLG-ALENGRQLHAQ 443
                  GY E+      L  F  MR+EG           +++C   G  LE G+ LHA 
Sbjct: 520 AWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAY 579

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
           +V +G++S     N+LITMYA+CG + ++  +FN + N + ++WNAM+AA   HG+G   
Sbjct: 580 IVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEV 639

Query: 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH----YA 559
           ++L  +M   G+  D+ +F   LSA     +++EG++    +HG   +  G +H    + 
Sbjct: 640 LKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQ----LHG-LAVKLGFEHDSFIFN 694

Query: 560 RFIDLLCRAGKFSEAKDVIDSLP--FKPSAPIWEALLAGCRIHG 601
              D+  + G+  E   V+  LP     S P W  L++    HG
Sbjct: 695 AAADMYSKCGEIGE---VVKMLPPSVNRSLPSWNILISALGRHG 735



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 148/551 (26%), Positives = 244/551 (44%), Gaps = 51/551 (9%)

Query: 81  IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
           ++   TLI  Y+    VK AR +F+  P+  R+ V +N M++           +E FR M
Sbjct: 107 VLHTNTLINMYTKFGRVKPARHLFDIMPV--RNEVSWNTMMSGIVRVGLYLEGMEFFRKM 164

Query: 141 RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVS 200
               +KP +F   S+++A        ++ +Q+H  V KSG          L  VYV    
Sbjct: 165 CDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGL---------LSDVYVSTAI 215

Query: 201 SPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY--------VKNDYLDAA--REFL-- 248
                   L+  +R+VF+EMP+R+ +SWT++M GY        V + Y D +  R+ +  
Sbjct: 216 LHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDESLGRQIIGQ 275

Query: 249 ---DGMSENVGVAWNALIS-----GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRL 300
               G+   + V  N+LIS     G V     +     + D  ++ S+ +A A +G    
Sbjct: 276 VVKSGLESKLAVE-NSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEE 334

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALV-TLYWKCGKVNE---ARDIFNQMPERDLVS-- 354
             ++ + + R        F   VN+  V TL    G V+     R I   + +    S  
Sbjct: 335 SFRIFSLMRR--------FHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVV 386

Query: 355 --WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
              N +L  Y  AG   EA  +F+ M  ++L+SW  +++    +G   + L L   M   
Sbjct: 387 CVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISS 446

Query: 413 GFKPCDY-AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
           G K  +Y  F  A+ +C      E GR LH  +V SG   +   GNAL++MY + G +  
Sbjct: 447 G-KSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSE 505

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
           +  V   MP  D V+WNA+I    +  +  +A+  ++ M  EG+  + IT ++VLSAC  
Sbjct: 506 SRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLL 565

Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
            G + E  +         G    E      I +  + G  S ++D+ + L  + +   W 
Sbjct: 566 PGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNR-NIITWN 624

Query: 592 ALLAGCRIHGN 602
           A+LA    HG+
Sbjct: 625 AMLAANAHHGH 635


>gi|302760949|ref|XP_002963897.1| hypothetical protein SELMODRAFT_80086 [Selaginella moellendorffii]
 gi|300169165|gb|EFJ35768.1| hypothetical protein SELMODRAFT_80086 [Selaginella moellendorffii]
          Length = 714

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 250/728 (34%), Positives = 393/728 (53%), Gaps = 38/728 (5%)

Query: 73  FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
           FD I  P   +   ++AAY+ +  + LA   F++TP K  D V +N M++ Y+   +   
Sbjct: 15  FDSIRNPTAFSHNVMVAAYAQNGYLDLAARTFDRTPNK--DVVSWNGMLSGYARYGSFRD 72

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           A   F +M       +  ++ +++SA A      +     +   ++       +  N LI
Sbjct: 73  AKLFFDEM----PYKNTVSYNTLISAFARQGNLAEARNLFNSMKIRD-----AATWNVLI 123

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
           + Y +         R L   AR +FD  P R+ ++W TM+ GY +  +LD A E    M 
Sbjct: 124 AGYTQ---------RCLCTHAREIFDRAPVRNVVTWNTMIGGYAQAGHLDNATELFGLMP 174

Query: 253 ENVGVAWNALISGY-VHRELKMLMLRIQL----DEFTYTSVISACANSGLFRLGKQVHAY 307
           +   V WNALISG   +R L   +   Q     D  ++ ++I  C +SG       +   
Sbjct: 175 QWNEVCWNALISGMGRNRRLPDALELFQALPFRDMVSWIAMIQGCVHSGDLHRAWDLF-- 232

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367
                 K  P   + +  A+VT +   G + EARD+F+ +P +D  + NA+++AY   G 
Sbjct: 233 ------KRMPLTDVVIWTAIVTAFAHSGFLQEARDLFDAIPIKDAAAVNAMIAAYGLHGE 286

Query: 368 IDEAKSLFEAMRE-RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
           I  AK LF++  + R+++SW  +++  +QNG+  + L +F+ M LEG  P   +F  A+ 
Sbjct: 287 IARAKDLFDSAGDLRDVISWNALLAAFSQNGHARQALGIFAGMDLEGIHPDGISFVSALD 346

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSL---SAGNALITMYARCGVVEAANCVFNTMPNVD 483
           +C  L AL  G+ LH +L+ +         S   AL+  YA+CG ++ A  +F+ M   D
Sbjct: 347 ACTILTALREGKLLHEELLLASQGEIFVEASLATALVNFYAKCGRLDEARSLFDAMAFCD 406

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFE 543
           ++  N+M+ A  Q G    A +L+++ +  GI PD +TF++++SAC+HAGL+  G RYF 
Sbjct: 407 AILLNSMLGAYAQSGRAGEAADLFQRAILSGIHPDAVTFVSMVSACSHAGLLDLGHRYFL 466

Query: 544 TMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNI 603
           ++ G + + P   HY   +DLL R G   + +D++D++PF+P    W++LLAGCR HG++
Sbjct: 467 SLVGDFALAPHAAHYTCMVDLLARTGHLMDGEDLLDAMPFQPEYTAWKSLLAGCRTHGDV 526

Query: 604 DLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEV 663
             G + A +     P  +  YVLLS +Y   G+  D   VRK M  R ++K  G S I +
Sbjct: 527 GRGARLARRATNANPVCSSPYVLLSRLYDAAGKHGDGISVRKAMDARRLRKPAGLSSITI 586

Query: 664 DNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHS 723
             + H F+     HPE  A+   L  L  +MR+ GYVPDT  VLHD + ++KE +LS HS
Sbjct: 587 KGRAHEFVAGGKNHPEISAILDELHSLNAKMREAGYVPDTSNVLHDFDDEEKEQSLSFHS 646

Query: 724 EKLAVAFGLMKLPGGAT-VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDG 782
           EKLAV FG++   G +  + V+KNLR+C DCH A KFMS++  R I VRD  RFHHF+DG
Sbjct: 647 EKLAVVFGMISTRGRSDPLFVVKNLRMCTDCHTATKFMSRIAKRAITVRDAHRFHHFQDG 706

Query: 783 KCSCGDYW 790
            C+C D+W
Sbjct: 707 ACACADFW 714



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 125/522 (23%), Positives = 215/522 (41%), Gaps = 85/522 (16%)

Query: 1   MMMKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIY 60
           M  KN     TL + +A Q  L + RN   S   R                  N LI  Y
Sbjct: 80  MPYKNTVSYNTLISAFARQGNLAEARNLFNSMKIRDAA-------------TWNVLIAGY 126

Query: 61  CKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAM 120
            +     +AR +FD  P  ++V   T+I  Y+ + ++  A E+F   P    + V +NA+
Sbjct: 127 TQRCLCTHAREIFDRAPVRNVVTWNTMIGGYAQAGHLDNATELFGLMP--QWNEVCWNAL 184

Query: 121 ITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSG 180
           I+    N     A+ELF+ +           F  ++S +A+I    + C  +H   +   
Sbjct: 185 ISGMGRNRRLPDALELFQAL----------PFRDMVSWIAMI----QGC--VHSGDLHRA 228

Query: 181 TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY 240
             LF  +    + ++   V++   +    +  AR +FD +P +D  +   M+  Y  +  
Sbjct: 229 WDLFKRMPLTDVVIWTAIVTA--FAHSGFLQEARDLFDAIPIKDAAAVNAMIAAYGLHGE 286

Query: 241 LDAAREFLDGMSENVGV-AWNALIS-----GYVHRELKML----MLRIQLDEFTYTSVIS 290
           +  A++  D   +   V +WNAL++     G+  + L +     +  I  D  ++ S + 
Sbjct: 287 IARAKDLFDSAGDLRDVISWNALLAAFSQNGHARQALGIFAGMDLEGIHPDGISFVSALD 346

Query: 291 ACANSGLFRLGKQVH-AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
           AC      R GK +H   LL ++ +   E SL    ALV  Y KCG+++EAR +F+ M  
Sbjct: 347 ACTILTALREGKLLHEELLLASQGEIFVEASLAT--ALVNFYAKCGRLDEARSLFDAMAF 404

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
            D +  N++L AY                               AQ+G   E   LF + 
Sbjct: 405 CDAILLNSMLGAY-------------------------------AQSGRAGEAADLFQRA 433

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA----LITMYAR 465
            L G  P    F   +++C+  G L+ G +    LV    D +L+   A    ++ + AR
Sbjct: 434 ILSGIHPDAVTFVSMVSACSHAGLLDLGHRYFLSLVG---DFALAPHAAHYTCMVDLLAR 490

Query: 466 CGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIEL 506
            G +     + + MP   +  +W +++A    HG+  R   L
Sbjct: 491 TGHLMDGEDLLDAMPFQPEYTAWKSLLAGCRTHGDVGRGARL 532



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 123/284 (43%), Gaps = 44/284 (15%)

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           +Y +CG V +A   F+ +      S N +++AY   G +D A   F+    ++++SW  M
Sbjct: 1   MYGRCGCVADAVICFDSIRNPTAFSHNVMVAAYAQNGYLDLAARTFDRTPNKDVVSWNGM 60

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL----- 444
           +SG A+ G   +    F +M  +       ++   I++ A  G L   R L   +     
Sbjct: 61  LSGYARYGSFRDAKLFFDEMPYKN----TVSYNTLISAFARQGNLAEARNLFNSMKIRDA 116

Query: 445 -----VHSGYDS-----------------SLSAGNALITMYARCGVVEAANCVFNTMPNV 482
                + +GY                   ++   N +I  YA+ G ++ A  +F  MP  
Sbjct: 117 ATWNVLIAGYTQRCLCTHAREIFDRAPVRNVVTWNTMIGGYAQAGHLDNATELFGLMPQW 176

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
           + V WNA+I+ +G++     A+EL++ +       D ++++ ++  C H+G +      F
Sbjct: 177 NEVCWNALISGMGRNRRLPDALELFQAL----PFRDMVSWIAMIQGCVHSGDLHRAWDLF 232

Query: 543 ETMHGPYGIPPGEDH--YARFIDLLCRAGKFSEAKDVIDSLPFK 584
           + M       P  D   +   +     +G   EA+D+ D++P K
Sbjct: 233 KRM-------PLTDVVIWTAIVTAFAHSGFLQEARDLFDAIPIK 269


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 246/706 (34%), Positives = 369/706 (52%), Gaps = 69/706 (9%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           + LI AYS    V  A  +FN   +  +D V + AM++ YS N     A  +F  MR   
Sbjct: 201 SGLIDAYSLCSLVSDAEHVFNG--IVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSG 258

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
            KP+ F  TSVL A A+ +        +H   +K+       V  AL+ +Y KC      
Sbjct: 259 CKPNPFALTSVLKA-AVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGD---- 313

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                +  AR  F+ +P  D +  + M++ Y +++  + A E                  
Sbjct: 314 -----IKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELF---------------- 352

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
                 L+++   +  +E++ +SV+ AC N      GKQ+H + +    K   E  L V 
Sbjct: 353 ------LRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAI----KIGHESDLFVG 402

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
           NAL+  Y KC          N M                     D +  +F ++R+ N +
Sbjct: 403 NALMDFYAKC----------NDM---------------------DSSLKIFSSLRDANEV 431

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
           SW  ++ G +Q+G GEE L +F +M+          ++  + +CA   ++ +  Q+H  +
Sbjct: 432 SWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSI 491

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
             S +++    GN+LI  YA+CG +  A  VF  +   D +SWNA+I+    HG  A A+
Sbjct: 492 EKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADAL 551

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
           EL+++M K  +  + ITF+ +LS C+  GLV  G   F++M   +GI P  +HY   + L
Sbjct: 552 ELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRL 611

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624
           L RAG+ ++A   I  +P  PSA +W ALL+ C IH N+ LG  +AE++ ++ P    TY
Sbjct: 612 LGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTY 671

Query: 625 VLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVY 684
           VLLSNMYA  G  D  A +RK MR+ GV+K PG SW+E+  ++H F V    HP+ + + 
Sbjct: 672 VLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVIN 731

Query: 685 KYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVL 744
             LE L L+  + GY+PD   VLHD++ +QK   L  HSE+LA+A+GL+  P G  +R+L
Sbjct: 732 AMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMTPPGHPIRIL 791

Query: 745 KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KNLR C DCH AF  +SK+V REI+VRD  RFHHF DGKCSCGDYW
Sbjct: 792 KNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 837



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 173/389 (44%), Gaps = 74/389 (19%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L + +H   I +      H+   L+D+Y K   +  AR  F+ IP  D++  + +I+ Y+
Sbjct: 281 LGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYA 340

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
            S+                                     A ELF  + R  V P+ ++ 
Sbjct: 341 QSN---------------------------------QNEQAFELFLRLMRSSVLPNEYSL 367

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
           +SVL A   +V+ +    Q+H   +K G      V NAL+  Y KC         + M +
Sbjct: 368 SSVLQACTNMVQLDFG-KQIHNHAIKIGHESDLFVGNALMDFYAKC---------NDMDS 417

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           + ++F  + + +E+SW T++ G+ ++           G+ E         +S +     +
Sbjct: 418 SLKIFSSLRDANEVSWNTIVVGFSQS-----------GLGEEA-------LSVFC----E 455

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           M   ++   + TY+SV+ ACA++   R   Q+H  +     K T      + N+L+  Y 
Sbjct: 456 MQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSI----EKSTFNNDTVIGNSLIDTYA 511

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL----LSWTV 388
           KCG + +A  +F  + ERD++SWNAI+S Y   G   +A  LF+ M + N+    +++  
Sbjct: 512 KCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVA 571

Query: 389 MISGLAQNGYGEEGLKLFSQMRLE-GFKP 416
           ++S  +  G    GL LF  MR++ G KP
Sbjct: 572 LLSVCSSTGLVNHGLSLFDSMRIDHGIKP 600



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 130/313 (41%), Gaps = 52/313 (16%)

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
           +D F     +  C   G  R G+ VH +++R          L   N L+ +Y K G +  
Sbjct: 57  VDSFACARQLQGCIARGDARGGRAVHGHVVRRGG--VGRLDLFCANVLLNMYGKLGPLAS 114

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR----ERNLLSWTVMISGLAQ 395
           AR +F++MPER++VS+  ++ A+   G  + A +LF  +R    E N    T M      
Sbjct: 115 ARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTM------ 168

Query: 396 NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSA 455
                  LKL   M   G        AG + SCA                  G+D +   
Sbjct: 169 -------LKLAIAMDAAG-------LAGGVHSCAW---------------KLGHDHNAFV 199

Query: 456 GNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI 515
           G+ LI  Y+ C +V  A  VFN +   D+V W AM++   ++     A  ++ +M   G 
Sbjct: 200 GSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGC 259

Query: 516 LPDRITFLTVLSA--CNHAGLVKEGRRYFETMHGP--YGIPPGEDHY-ARFIDLLCRAGK 570
            P+     +VL A  C  + ++ +G      +HG     +   E H     +D+  + G 
Sbjct: 260 KPNPFALTSVLKAAVCLPSVVLGKG------IHGCAIKTLNDTEPHVGGALLDMYAKCGD 313

Query: 571 FSEAKDVIDSLPF 583
             +A+   + +P+
Sbjct: 314 IKDARLAFEMIPY 326



 Score = 45.8 bits (107), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y+S L+ C     I    A  +H  +  S F     I N LID Y K   +  A  +F  
Sbjct: 468 YSSVLRACASTASIRH--AGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQH 525

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMF---NKTPLKMRDTVFYNAMITAYSHNSNGHA 132
           + + DI++   +I+ Y+       A E+F   NK+ ++  D  F  A+++  S     + 
Sbjct: 526 LMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFV-ALLSVCSSTGLVNH 584

Query: 133 AIELFRDMRRD-DVKPDNFTFTSVLSALA 160
            + LF  MR D  +KP    +T ++  L 
Sbjct: 585 GLSLFDSMRIDHGIKPSMEHYTCIVRLLG 613


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/630 (37%), Positives = 350/630 (55%), Gaps = 54/630 (8%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           Q+HC +V SG      + N L+S+Y K    P         +A  V+  M +++ +S   
Sbjct: 65  QLHCLLVVSGFSSDKFICNHLMSMYSKLGDFP---------SAVAVYGRMRKKNYMSSNI 115

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLD 281
           ++ GYV+   L  AR+  D M +     WNA+I+G +  E          +M  L    D
Sbjct: 116 LINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPD 175

Query: 282 EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEAR 341
           E+T  SV S  A      +G+Q+H Y +    K   E  L VN++L  +Y + GK+ +  
Sbjct: 176 EYTLGSVFSGSAGLRSVSIGQQIHGYTI----KYGLELDLVVNSSLAHMYMRNGKLQDGE 231

Query: 342 DIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEE 401
            +                                 +M  RNL++W  +I G AQNG  E 
Sbjct: 232 IVI-------------------------------RSMPVRNLVAWNTLIMGNAQNGCPET 260

Query: 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALIT 461
            L L+  M++ G +P    F   ++SC+ L     G+Q+HA+ +  G  S ++  ++LI+
Sbjct: 261 VLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLIS 320

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP-DRI 520
           MY++CG +  A   F+   + D V W++MI+A G HG G  AIEL+  M ++  +  + +
Sbjct: 321 MYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEV 380

Query: 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580
            FL +L AC+H+GL  +G   F+ M   YG  PG  HY   +DLL RAG   +A+ +I S
Sbjct: 381 AFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRS 440

Query: 581 LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA 640
           +P K    IW+ LL+ C IH N ++  +  +++ Q+ P+ +  YVLL+N++A+  RW D 
Sbjct: 441 MPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDV 500

Query: 641 ARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYV 700
           + VRK MRD+ VKKE G SW E   +VH F + D +  +++ +Y YL++L LEM+  GY 
Sbjct: 501 SEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYK 560

Query: 701 PDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFM 760
           PDT  VLHDM+ ++KE  L  HSEKLAVAF LM LP GA +R++KNLR+C DCH AFK++
Sbjct: 561 PDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYI 620

Query: 761 SKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           S +  REI +RDG RFHHF +GKCSCGDYW
Sbjct: 621 SVIKNREITLRDGSRFHHFINGKCSCGDYW 650



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 174/361 (48%), Gaps = 12/361 (3%)

Query: 277 RIQLDEFTYTSV----ISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           R +L+ FT TS+    I +C        GKQ+H  LL      + +F   + N L+++Y 
Sbjct: 35  RFRLNIFTNTSLFTPFIQSCTTRQSLPSGKQLHC-LLVVSGFSSDKF---ICNHLMSMYS 90

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           K G    A  ++ +M +++ +S N +++ YV AG +  A+ +F+ M +R L +W  MI+G
Sbjct: 91  KLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAG 150

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
           L Q  + EEGL LF +M   GF P +Y      +  AGL ++  G+Q+H   +  G +  
Sbjct: 151 LIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELD 210

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           L   ++L  MY R G ++    V  +MP  + V+WN +I    Q+G     + LY+ M  
Sbjct: 211 LVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKI 270

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRR-YFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571
            G  P++ITF+TVLS+C+   +  +G++ + E +    G        +  I +  + G  
Sbjct: 271 SGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAI--KIGASSVVAVVSSLISMYSKCGCL 328

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631
            +A         +    +W ++++    HG  D  I+    + +           L+ +Y
Sbjct: 329 GDAAKAFSEREDEDEV-MWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLY 387

Query: 632 A 632
           A
Sbjct: 388 A 388



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 117/511 (22%), Positives = 221/511 (43%), Gaps = 82/511 (16%)

Query: 9   IRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVY 68
           I T  + +   +Q C  R  + S   + +H  ++ SGF   + I N L+ +Y K      
Sbjct: 40  IFTNTSLFTPFIQSCTTRQSLPS--GKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPS 97

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           A  ++  + + + ++   LI  Y  + ++  AR++F++ P   R    +NAMI       
Sbjct: 98  AVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMP--DRKLTTWNAMIAGLIQFE 155

Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL 188
                + LFR+M      PD +T  SV S  A +        Q+H   +K G  L   V 
Sbjct: 156 FNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGL-RSVSIGQQIHGYTIKYGLELDLVVN 214

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           ++L  +Y++            +     V   MP R+ ++W T++ G  +N          
Sbjct: 215 SSLAHMYMR---------NGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQN---------- 255

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
            G  E V          Y+++ +K+   R   ++ T+ +V+S+C++  +   G+Q+HA  
Sbjct: 256 -GCPETV---------LYLYKMMKISGCRP--NKITFVTVLSSCSDLAIRGQGQQIHAEA 303

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
           +    K      + V ++L+++Y KCG + +A   F++  + D V W++++SAY   G  
Sbjct: 304 I----KIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQG 359

Query: 369 DEAKSLFEAMRER-----NLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFA 422
           DEA  LF  M E+     N +++  ++   + +G  ++GL+LF  M  + GFKP      
Sbjct: 360 DEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKP------ 413

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-N 481
                                         L     ++ +  R G ++ A  +  +MP  
Sbjct: 414 -----------------------------GLKHYTCVVDLLGRAGCLDQAEAIIRSMPIK 444

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
            D V W  +++A   H N   A  +++++L+
Sbjct: 445 TDIVIWKTLLSACNIHKNAEMAQRVFKEILQ 475


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/522 (42%), Positives = 325/522 (62%), Gaps = 8/522 (1%)

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
           ++M +L +  + FT+T +   C+N   F LG+Q H  ++    K + E  + V N+++  
Sbjct: 81  VRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVI----KNSFEMDVFVRNSIIRF 136

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y  CG++N+AR +F++  E D+VSWN+++   +  G I EA SLF  M ERN +SW +MI
Sbjct: 137 YSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMMI 196

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY- 449
           SG AQNG  +E L LF +M++   +P        +++C+ LGAL++G  +H  +      
Sbjct: 197 SGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVR 256

Query: 450 -DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
            DS LSA  ALI MYA+CG ++ A   F+T    D  ++ A I+ L  +G    A++L+E
Sbjct: 257 VDSILSA--ALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFE 314

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568
           QM  EGI PD ++++ VL AC+HAG V++G  YF +M   +GI P  DHYA  +DLL RA
Sbjct: 315 QMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDLLGRA 374

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628
           G   EA+  + S+P KP   IW ALL  CR++GN ++G +    L +   +H G Y+LLS
Sbjct: 375 GLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRVGSLLVESDQNHDGRYILLS 434

Query: 629 NMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLE 688
           N+YA   + +DA +VRK MR R V + PGCS IEV   VH F   D +H + + +Y   E
Sbjct: 435 NIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIEVAGFVHEFFSGDRSHEKTEEIYLMWE 494

Query: 689 QLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLR 748
           ++V E++K GY  +T+ V+ D+E ++KE  +  HSEKLAVAFG +    G+T+R++KN+R
Sbjct: 495 EIVKEIKKFGYREETRAVVFDVEEEEKEAVIGHHSEKLAVAFGFLYTKSGSTLRIVKNIR 554

Query: 749 ICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           IC DCH A K +SKV  R+I +RD K FHHF +G CSC DYW
Sbjct: 555 ICSDCHYAIKLVSKVFKRKIAIRDRKCFHHFEEGLCSCKDYW 596



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 125/504 (24%), Positives = 203/504 (40%), Gaps = 80/504 (15%)

Query: 62  KSLKLVYARTLFDEIPQPDIVARTTL-IAAYSASDNVKLAREMFNKTPLKMRDTVF-YNA 119
           K  K  + + + + +  P    R  +  +A   S ++  A  +  +T      TVF +N 
Sbjct: 2   KQFKEAHTQLIINGLTHPPPSLRPIISFSALDPSGDIDYALLLLLRTSTP--PTVFLFNT 59

Query: 120 MITAYSHNSNGHA---AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTV 176
            I  +S      +   ++ LF  M    + P+NFTFT +    +  V  +    Q H  V
Sbjct: 60  TIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLG-RQFHGMV 118

Query: 177 VKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV 236
           +K+   +   V N++I  Y  C           +  AR VFDE  E D +SW +M+ G +
Sbjct: 119 IKNSFEMDVFVRNSIIRFYSVC---------GRLNDARWVFDESSELDVVSWNSMIDGCI 169

Query: 237 KNDYLDAAREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTS 287
           +N  +  A      M+E   ++WN +ISGY              +M ML  + +     S
Sbjct: 170 RNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVS 229

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           V+SAC+  G    G  VH Y+     K        ++ AL+ +Y KCG ++ A   F+  
Sbjct: 230 VLSACSQLGALDHGCWVHCYI----GKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTS 285

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
            +RD+ ++ A +S     G  +EA  LFE                               
Sbjct: 286 RKRDVSAYTAAISGLAMNGCSEEALQLFE------------------------------- 314

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL--VHSGYDSSLSAGNALITMYAR 465
           QM+ EG  P   ++   + +C+  G +E G    A +  VH G    L     ++ +  R
Sbjct: 315 QMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVH-GIRPELDHYACMVDLLGR 373

Query: 466 CGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
            G++E A     +MP   D+V W A++ A   +GN                +  R+  L 
Sbjct: 374 AGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAE--------------MGQRVGSLL 419

Query: 525 VLSACNHAG-LVKEGRRYFETMHG 547
           V S  NH G  +     Y E+M G
Sbjct: 420 VESDQNHDGRYILLSNIYAESMKG 443



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 167/388 (43%), Gaps = 41/388 (10%)

Query: 27  NPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTT 86
           N +   L R  H  +I + F+    + N +I  Y    +L  AR +FDE  + D+V+  +
Sbjct: 104 NCVAFDLGRQFHGMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNS 163

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           +I     + N+  A  +F+K  +  R+ + +N MI+ Y+ N     A+ LFR+M+  D +
Sbjct: 164 MIDGCIRNGNILEALSLFSK--MTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQE 221

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           P++    SVLSA + +   +  C  +HC + K    + + +  ALI +Y KC S      
Sbjct: 222 PNSAILVSVLSACSQLGALDHGCW-VHCYIGKKCVRVDSILSAALIDMYAKCGS------ 274

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              +  A + F    +RD  ++T  ++G   N   + A +  + M               
Sbjct: 275 ---IDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKGE------------ 319

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                      I  D  +Y +V+ AC+++G    G    A +        PE  L     
Sbjct: 320 ----------GISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHG-IRPE--LDHYAC 366

Query: 327 LVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA---YVSAGLIDEAKSLFEAMRERN 382
           +V L  + G + EA      MP + D V W A+L A   Y +A +     SL     + +
Sbjct: 367 MVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRVGSLLVESDQNH 426

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMR 410
              + ++ +  A++  GE+  ++   MR
Sbjct: 427 DGRYILLSNIYAESMKGEDAEQVRKTMR 454


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 246/759 (32%), Positives = 400/759 (52%), Gaps = 84/759 (11%)

Query: 41  MISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDI---VARTTLIAAYSASDNV 97
           M S GF    +    ++ +  +  +L + R L   + +      +    L+  Y+    V
Sbjct: 256 MQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQCNALLVMYARCGWV 315

Query: 98  KLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLS 157
             A  +F +  +  +D + +N+M++ Y  N     AI+ F +M ++   PD+    S+LS
Sbjct: 316 DSALRVFRE--IGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLS 373

Query: 158 ALA----LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           A+     LI   E     +H   VK        + N L+ +Y+KC S         +  +
Sbjct: 374 AVGHLGRLINGRE-----VHAYAVKQRLDSDLQIANTLMDMYIKCYS---------VECS 419

Query: 214 RRVFDEMPERDELSWTTMMTGYVKND-YLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
            RVFD M  +D +SWTT++  Y ++  Y +A  +F     E                   
Sbjct: 420 ARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEG------------------ 461

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                I++D     S++ AC+      L KQVH+Y +R          L + N ++ +Y 
Sbjct: 462 -----IKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGL-----LDLILKNRIIDIYG 511

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           +CG+V  A +IF  + ++D+V+W ++++ +   GL+ EA                     
Sbjct: 512 ECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEA--------------------- 550

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
                     + LF +M   G +P   A  G + + AGL +L  G+++H  L+   +   
Sbjct: 551 ----------VALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVE 600

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
            +  ++L+ MY+ CG +  A  VF+     D V W AMI A G HG+G +AI ++++ML+
Sbjct: 601 GAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLE 660

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
            G+ PD ++FL +L AC+H+ LV EG+ Y + M   Y + P ++HYA  +DLL R+G+  
Sbjct: 661 TGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTE 720

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632
           EA   I S+P +P + +W ALL  CRIH N +L + A ++L +L P + G YVL+SN++A
Sbjct: 721 EAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFA 780

Query: 633 NLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVL 692
            +G+W++   +R  M ++G++K+P CSWIE+ N VH F   D +H ++QA++  L ++  
Sbjct: 781 EMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEITE 840

Query: 693 EMRKLG-YVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICG 751
           ++R+ G YV DT FVLHD+  ++K   L  HSE+LA++FGL+    G  +R+ KNLR+CG
Sbjct: 841 KLRREGQYVEDTSFVLHDVSEEEKIDLLHRHSERLAISFGLISTASGTPLRIAKNLRVCG 900

Query: 752 DCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           DCH   K +SK+  REIVVRD  RFHHF  G CSCGD+W
Sbjct: 901 DCHEFTKLVSKLFEREIVVRDANRFHHFSGGTCSCGDFW 939



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 147/527 (27%), Positives = 226/527 (42%), Gaps = 115/527 (21%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREH---IINRLIDIYCKSLKLVYAR 70
           + Y   L L   R  ++    R +HAH +++G    +    +  +L+ +Y K  +L  A 
Sbjct: 56  DHYGWVLDLVAVRRAVSE--GRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAH 113

Query: 71  TLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNG 130
            LFD +P                      AR +F+           +NA+I A   +   
Sbjct: 114 RLFDGMP----------------------ARTVFS-----------WNALIGACLSSGGA 140

Query: 131 HAAIELFRDMRRDD----VKPDNFTFTSVLSALALIVEEEKQC-MQMHCTVVKSGTGLFT 185
             A+ ++R MR  +      PD  T  SVL A     E + +C  ++H   VKSG    T
Sbjct: 141 GEAVGVYRAMRASEPVAGAAPDGCTLASVLKACG--AEGDGRCGSEVHGLAVKSGLDRST 198

Query: 186 SVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE-RDELSWTTMMTGYVKNDYLDAA 244
            V NAL+ +Y KC          L+ +A RVF+ M + RD  SW + ++G V+N     A
Sbjct: 199 LVANALVGMYAKC---------GLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEA 249

Query: 245 REFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304
            +    M  +          G+             ++ +T   V+  CA       G+++
Sbjct: 250 LDLFRRMQSD----------GF------------SMNSYTTVGVLQVCAELAQLNHGREL 287

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVS 364
           HA LL    K   EF++   NAL+ +Y +CG V+ A  +F ++ ++D +SWN++LS YV 
Sbjct: 288 HAALL----KCGTEFNIQC-NALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYV- 341

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
                                         QN    E +  F +M   GF P D+A   +
Sbjct: 342 ------------------------------QNRLYAEAIDFFGEMVQNGFNP-DHACIVS 370

Query: 425 ITSCAG-LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
           + S  G LG L NGR++HA  V    DS L   N L+ MY +C  VE +  VF+ M   D
Sbjct: 371 LLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKD 430

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
            VSW  +IA   Q    + AI  +    KEGI  D +   ++L AC+
Sbjct: 431 HVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACS 477



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 121/399 (30%), Positives = 176/399 (44%), Gaps = 76/399 (19%)

Query: 148 DNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGT------GLFTSVLNALISVYVKCVSS 201
           D++ +   L A+   V E +Q   +H   V +G       G   +    L+ +Y KC   
Sbjct: 56  DHYGWVLDLVAVRRAVSEGRQ---LHAHAVATGALGDDDAGFLAT---KLLFMYGKCGRL 109

Query: 202 PFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNA 261
           P          A R+FD MP R   SW  ++   + +           G  E VGV    
Sbjct: 110 P---------DAHRLFDGMPARTVFSWNALIGACLSSG----------GAGEAVGV---- 146

Query: 262 LISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
               Y        +     D  T  SV+ AC   G  R G +VH   +    K   + S 
Sbjct: 147 ----YRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAV----KSGLDRST 198

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE- 380
            V NALV +Y KC                               GL+D A  +FE MR+ 
Sbjct: 199 LVANALVGMYAKC-------------------------------GLLDSALRVFEWMRDG 227

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
           R++ SW   ISG  QNG   E L LF +M+ +GF    Y   G +  CA L  L +GR+L
Sbjct: 228 RDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGREL 287

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           HA L+  G + ++   NAL+ MYARCG V++A  VF  + + D +SWN+M++   Q+   
Sbjct: 288 HAALLKCGTEFNIQC-NALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLY 346

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
           A AI+ + +M++ G  PD    +++LSA  H G +  GR
Sbjct: 347 AEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGR 385



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 77/180 (42%), Gaps = 16/180 (8%)

Query: 433 ALENGRQLHAQLVHSGYDSSLSAG---NALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
           A+  GRQLHA  V +G      AG     L+ MY +CG +  A+ +F+ MP     SWNA
Sbjct: 70  AVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNA 129

Query: 490 MIAALGQHGNGARAIELYEQMLKE----GILPDRITFLTVLSACNHAGLVKEGRRYFETM 545
           +I A    G    A+ +Y  M       G  PD  T  +VL AC   G   +GR   E +
Sbjct: 130 LIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEG---DGRCGSE-V 185

Query: 546 HGPYGIPPGEDHYA----RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
           HG   +  G D         + +  + G    A  V + +        W + ++GC  +G
Sbjct: 186 HG-LAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNG 244


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/624 (38%), Positives = 350/624 (56%), Gaps = 67/624 (10%)

Query: 167 KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDEL 226
           +Q +Q+H  ++K G      V + LI++Y K     F         + +VFDE P++   
Sbjct: 42  RQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLF---------SLQVFDETPKKSST 92

Query: 227 SWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYT 286
           +W+++++ + +N+    A +F                        +ML   ++ D+  Y 
Sbjct: 93  TWSSVISAFAQNEAPLLALQFFR----------------------RMLNDGVRPDDHIYP 130

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
           S   AC       +GK VH   ++T         + V ++LV +Y KCG+          
Sbjct: 131 SATKACGFLRRSDVGKSVHCLAVKTGYYC----DVFVGSSLVDMYAKCGE---------- 176

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
                                I +A+ LF+ M ERN++SW+ MI G AQ   G E L LF
Sbjct: 177 ---------------------IGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLF 215

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
            Q  +E     D+ F+  I  C+    LE G+ +H   +   +DSS   G+ALI++Y++C
Sbjct: 216 KQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKC 275

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           GV+E A  VF+ +P  +   WN+M+ A  QH +  R   L+E+M   G+ P+ I FL+VL
Sbjct: 276 GVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSVL 335

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
            AC+HAGLV++GR YF  M   YGI P  +HYA  +DLL RAGK  EA  VI  +P +P+
Sbjct: 336 YACSHAGLVEKGREYFSLMR-DYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPT 394

Query: 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKL 646
             +W ALL GCRIH + ++    A+++ ++    +G +VLLSN YA  GR+++AAR+RK+
Sbjct: 395 ESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKM 454

Query: 647 MRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFV 706
           +RDRGVKKE G SW+E  NKVH F   D +H +   +Y+ LE+L  EM K GYV DT FV
Sbjct: 455 LRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSFV 514

Query: 707 LHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGR 766
           L  ++ ++K   +  HSE+LA+AFGL+  P G  +RV+KNLR+CGDCH A KFMSK  GR
Sbjct: 515 LRAVDGEEKNETIRYHSERLAIAFGLITFPPGRPIRVMKNLRVCGDCHAAIKFMSKCCGR 574

Query: 767 EIVVRDGKRFHHFRDGKCSCGDYW 790
            ++VRD  RFH F DGKCSCGDYW
Sbjct: 575 VLIVRDNNRFHRFEDGKCSCGDYW 598



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 112/428 (26%), Positives = 196/428 (45%), Gaps = 72/428 (16%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           LI  YS +     + ++F++TP K   T  ++++I+A++ N     A++ FR M  D V+
Sbjct: 66  LINLYSKTQLPLFSLQVFDETPKKSSTT--WSSVISAFAQNEAPLLALQFFRRMLNDGVR 123

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           PD+  + S   A   +   +     +HC  VK+G      V ++L+ +Y KC        
Sbjct: 124 PDDHIYPSATKACGFLRRSDVG-KSVHCLAVKTGYYCDVFVGSSLVDMYAKC-------- 174

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVK-NDYLDAAREFLDGMSENVGVAWNALISG 265
              +G AR +FDEMPER+ +SW+ M+ GY + +D ++A   F   + E+V V        
Sbjct: 175 -GEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDV-------- 225

Query: 266 YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
                          ++FT++SVI  C++S    LGK +H   L    K + + S  V +
Sbjct: 226 ---------------NDFTFSSVIRVCSSSTFLELGKLIHGLCL----KMSFDSSSFVGS 266

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
           AL++LY KCG +  A  +F+++P R+L  WN++L A                        
Sbjct: 267 ALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIA------------------------ 302

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
                   AQ+ + +    LF +M   G KP    F   + +C+  G +E GR+  + + 
Sbjct: 303 -------CAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYACSHAGLVEKGREYFSLMR 355

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGNGARAI 504
             G +       +L+ +  R G ++ A  V   MP   + S W A++     H +   A 
Sbjct: 356 DYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAA 415

Query: 505 ELYEQMLK 512
            + +++L+
Sbjct: 416 FVADRILE 423



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 161/366 (43%), Gaps = 52/366 (14%)

Query: 298 FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA 357
            R G Q+HA++L+   +  P     V++ L+ LY K      +  +F++ P++   +W++
Sbjct: 41  LRQGLQLHAHILKFGLQTIP----LVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSS 96

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
           ++SA+                               AQN      L+ F +M  +G +P 
Sbjct: 97  VISAF-------------------------------AQNEAPLLALQFFRRMLNDGVRPD 125

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
           D+ +  A  +C  L   + G+ +H   V +GY   +  G++L+ MYA+CG +  A  +F+
Sbjct: 126 DHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFD 185

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKE 537
            MP  + VSW+ MI    Q  +G  A+ L++Q L E +  +  TF +V+  C+ +  ++ 
Sbjct: 186 EMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLEL 245

Query: 538 GRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
           G+     +HG              +  I L  + G    A  V D +P + +  +W ++L
Sbjct: 246 GK----LIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTR-NLGLWNSML 300

Query: 595 AGCRIHGNIDLGIQAAEQLFQLMPH---HAGTYVLLSNMYA--NLGRWDDAARVRKLMRD 649
             C  H +     Q    LF+ M +          LS +YA  + G  +       LMRD
Sbjct: 301 IACAQHAH----TQRVFGLFEEMGNVGMKPNFIXFLSVLYACSHAGLVEKGREYFSLMRD 356

Query: 650 RGVKKE 655
            G++ E
Sbjct: 357 YGIEPE 362



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 98/418 (23%), Positives = 171/418 (40%), Gaps = 88/418 (21%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
           S + +SVH   + +G+     + + L+D+Y K  ++  AR LFDE+P+ ++V+       
Sbjct: 142 SDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVS------- 194

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
                                     ++ MI  Y+   +G  A+ LF+    +DV  ++F
Sbjct: 195 --------------------------WSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDF 228

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           TF+SV+   +     E   + +H   +K      + V +ALIS+Y KC          ++
Sbjct: 229 TFSSVIRVCSSSTFLELGKL-IHGLCLKMSFDSSSFVGSALISLYSKC---------GVI 278

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
             A +VFDE+P R+   W +M+    ++ +        + M  NVG+  N +        
Sbjct: 279 EGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMG-NVGMKPNFI-------- 329

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
                         + SV+ AC+++GL   G++  + +     +P  E       +LV L
Sbjct: 330 -------------XFLSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHY----ASLVDL 372

Query: 331 YWKCGKVNEARDIFNQMPERDLVS-WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
             + GK+ EA  +  QMP R   S W A+L+        D   + F A R   + S +  
Sbjct: 373 LGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHK--DTEMAAFVADRILEMDSSSSG 430

Query: 390 ISGLAQNGYG-----EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
           +  L  N Y      EE  ++   +R  G K              GL  +E G ++H 
Sbjct: 431 LHVLLSNAYAAAGRYEEAARMRKMLRDRGVK-----------KETGLSWVEEGNKVHT 477



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 85/188 (45%), Gaps = 27/188 (14%)

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
           +L  G QLHA ++  G  +     + LI +Y++  +   +  VF+  P   S +W+++I+
Sbjct: 40  SLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVIS 99

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN-----------HAGLVKEGRRY 541
           A  Q+     A++ + +ML +G+ PD   + +   AC            H   VK G  Y
Sbjct: 100 AFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTG-YY 158

Query: 542 FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
            +   G           +  +D+  + G+  +A+ + D +P + +   W  ++ G   + 
Sbjct: 159 CDVFVG-----------SSLVDMYAKCGEIGDARHLFDEMP-ERNVVSWSGMIYG---YA 203

Query: 602 NIDLGIQA 609
            +D G++A
Sbjct: 204 QLDDGVEA 211


>gi|357519251|ref|XP_003629914.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523936|gb|AET04390.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 243/734 (33%), Positives = 398/734 (54%), Gaps = 80/734 (10%)

Query: 62  KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMI 121
           K+ KL  AR +F++IP P +   T L+ AY+ ++N+  A  +FN+ P   +DT+ +N++I
Sbjct: 69  KNQKLDSARAVFNKIPSPHVSLYTKLLLAYAHNNNLHEAINLFNQIPSNTKDTISWNSVI 128

Query: 122 TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALI--VEEEKQCMQMHCTVVKS 179
            A    ++   A++LF +M +     ++ ++T+++        V E ++       V K 
Sbjct: 129 KASIICNDFVTAVKLFDEMPQR----NSISWTTIIHGFLSTGRVNEAERFFNAMPYVDKD 184

Query: 180 GTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND 239
                 +  NA+++ Y          +   +  A R+F +MP RD +SWT+++ G  +N 
Sbjct: 185 -----VATWNAMVNGYC---------NNGRVNDALRLFCQMPSRDVISWTSIIVGLDRNG 230

Query: 240 YLDAAREFLDGMS--ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGL 297
               A  F   M     VG++   L+ G                       +SA A    
Sbjct: 231 KSYQALFFFKNMVGFSGVGISSTTLVCG-----------------------LSAAAKILD 267

Query: 298 FRLGKQVHAYLLRTE-AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWN 356
           F  G Q+H  + +        EF   V+ +LVT Y  C ++ +A  +F +   +++V W 
Sbjct: 268 FYAGIQIHCCMFKFGFCCGLDEF---VSASLVTFYASCKRMGDACKVFGETVCKNVVVWT 324

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
           A+L                               +G   N    E L++FS+M      P
Sbjct: 325 ALL-------------------------------TGCGLNDKHVEALEVFSEMMRFNVVP 353

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
            + +F  A+ SC GL  LE GR +HA  +  G ++++  GN+L+ MY++CG +  A CVF
Sbjct: 354 NESSFTSALNSCVGLEDLEKGRVIHAAGIKMGLENAVYTGNSLVVMYSKCGFIGDALCVF 413

Query: 477 NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536
             +   + VSWN++I    QHG G  A+ L+++ML+EG+  D IT   +LSAC+ +G+++
Sbjct: 414 KGICEKNVVSWNSVIVGCAQHGCGTWALVLFKEMLREGVESDEITLTGLLSACSRSGMLQ 473

Query: 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           + R +F        +    +HYA  +D+L R G+  EA+ +  S+P + ++ +W  LL+ 
Sbjct: 474 KARCFFGYFARKRSMKLTVEHYACMVDVLGRCGEVEEAEALATSMPVEANSMVWLVLLSA 533

Query: 597 CRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEP 656
           CR+H ++D+  +AA+++F++ P  +  YVLLSN+YA+  RW + AR+R  M+  G+ K+P
Sbjct: 534 CRVHSSLDVAERAAKRIFEMEPDCSAAYVLLSNLYASSRRWLEVARIRMKMKHNGIVKQP 593

Query: 657 GCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKE 716
           G SWI +    H FL  D +HP  + +Y+ L  L +++R+LGY+PD +F LHD+E +Q E
Sbjct: 594 GSSWITLKGMRHEFLSADRSHPLTEEIYEKLVWLGVKLRELGYIPDQQFALHDVEIEQNE 653

Query: 717 YALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRF 776
             LS HSE+LA+AFGL+    G+T+ ++KNLR+CGDCH A   M+K+V REIVVRD  RF
Sbjct: 654 EMLSYHSERLAIAFGLLSTVEGSTITIMKNLRVCGDCHTAITLMAKIVNREIVVRDSSRF 713

Query: 777 HHFRDGKCSCGDYW 790
           HHF++G CSCGDYW
Sbjct: 714 HHFKNGICSCGDYW 727



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 102/426 (23%), Positives = 182/426 (42%), Gaps = 41/426 (9%)

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           I+ ++KC ++PF +             + P+    S       ++KN  LD+AR   + +
Sbjct: 35  ITTHLKCRTTPFTT-----------LIQNPKSSSTSLNFTFLNHLKNQKLDSARAVFNKI 83

Query: 252 SENVGVAWNALISGYVH----RELKMLMLRI---QLDEFTYTSVISACANSGLFRLGKQV 304
                  +  L+  Y H     E   L  +I     D  ++ SVI A      F     V
Sbjct: 84  PSPHVSLYTKLLLAYAHNNNLHEAINLFNQIPSNTKDTISWNSVIKASIICNDF-----V 138

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP--ERDLVSWNAILSAY 362
            A  L  E       S      ++  +   G+VNEA   FN MP  ++D+ +WNA+++ Y
Sbjct: 139 TAVKLFDEMPQRNSISW---TTIIHGFLSTGRVNEAERFFNAMPYVDKDVATWNAMVNGY 195

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RLEGFKPCDYAF 421
            + G +++A  LF  M  R+++SWT +I GL +NG   + L  F  M    G        
Sbjct: 196 CNNGRVNDALRLFCQMPSRDVISWTSIIVGLDRNGKSYQALFFFKNMVGFSGVGISSTTL 255

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLS--AGNALITMYARCGVVEAANCVFNTM 479
              +++ A +     G Q+H  +   G+   L      +L+T YA C  +  A  VF   
Sbjct: 256 VCGLSAAAKILDFYAGIQIHCCMFKFGFCCGLDEFVSASLVTFYASCKRMGDACKVFGET 315

Query: 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
              + V W A++   G +     A+E++ +M++  ++P+  +F + L++C     +++GR
Sbjct: 316 VCKNVVVWTALLTGCGLNDKHVEALEVFSEMMRFNVVPNESSFTSALNSCVGLEDLEKGR 375

Query: 540 RYFETMHGPYGIPPGEDHYA----RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
                +H   GI  G ++        + +  + G   +A  V   +  K     W +++ 
Sbjct: 376 ----VIHAA-GIKMGLENAVYTGNSLVVMYSKCGFIGDALCVFKGICEKNVVS-WNSVIV 429

Query: 596 GCRIHG 601
           GC  HG
Sbjct: 430 GCAQHG 435


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/630 (35%), Positives = 339/630 (53%), Gaps = 67/630 (10%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVS----------SRSLMGAARRVFDEM 220
            +H   ++SG        NAL+++Y K   S   S          S +   + R+VFDEM
Sbjct: 71  SLHALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEM 130

Query: 221 PERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQL 280
            ERD +SW T++ G  +      A  F+                       KM     + 
Sbjct: 131 IERDVVSWNTLVLGCAEEGRHHEALGFVR----------------------KMCREGFRP 168

Query: 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
           D FT ++V+   A     + G +VH +  R       +  + V ++L+ +Y  C + + +
Sbjct: 169 DSFTLSTVLPIFAECADVKRGLEVHGFAFRNGF----DSDVFVGSSLIDMYANCTRTDYS 224

Query: 341 RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGE 400
             +F+ +P RD +                                W  +++G AQNG  E
Sbjct: 225 VKVFDNLPVRDHIL-------------------------------WNSLLAGCAQNGSVE 253

Query: 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALI 460
           E L +F +M   G +P    F+  I  C  L +L  G+QLHA ++  G++ ++   ++LI
Sbjct: 254 EALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLI 313

Query: 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI 520
            MY +CG +  A+C+F+ M + D VSW AMI     HG    A+ L+E+M      P+ I
Sbjct: 314 DMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHI 373

Query: 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580
           TFL VL+AC+HAGLV +G +YF++M   YGI P  +H+A   D L RAG+  EA + I  
Sbjct: 374 TFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISK 433

Query: 581 LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA 640
           +  KP+A +W  LL  CR+H N  L  + A+++ +L P   G++V+LSNMY+  GRW++A
Sbjct: 434 MQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEA 493

Query: 641 ARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYV 700
           A +R+ MR +G+KK+P CSWIEV +K+HVF+  D +HP    +   L     +M + G+V
Sbjct: 494 AHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHDRSHPWYDRIIDALNAFSEQMAREGHV 553

Query: 701 PDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFM 760
           P+T+ V  D+E + K Y L  HSEKLA+ FG++  P G  +RV+KNLR+C DCH   KF+
Sbjct: 554 PNTEDVFQDIEEEHKSYVLCGHSEKLAIVFGIISTPAGTKIRVMKNLRVCIDCHTVTKFI 613

Query: 761 SKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           SK+  REIVVRD  RFHHF+DG CSCGD+W
Sbjct: 614 SKLADREIVVRDANRFHHFKDGNCSCGDFW 643



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 119/500 (23%), Positives = 216/500 (43%), Gaps = 87/500 (17%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
           S+L  S+HA  I SG        N L+++YCK             +P   + +    I  
Sbjct: 66  SALGASLHALAIRSGAFADRFTANALLNLYCK-------------VPCSYLDSTGVAIVD 112

Query: 91  YSASDNV-KLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
              S    +  R++F++  +  RD V +N ++   +     H A+   R M R+  +PD+
Sbjct: 113 VPGSSTAFESVRKVFDE--MIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDS 170

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           FT ++VL   A    + K+ +++H    ++G      V ++LI +Y  C  + +      
Sbjct: 171 FTLSTVLPIFAECA-DVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDY------ 223

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
              + +VFD +P RD + W +++ G  +N  ++          E +G+            
Sbjct: 224 ---SVKVFDNLPVRDHILWNSLLAGCAQNGSVE----------EALGIF----------- 259

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
             +ML   ++    T++S+I  C N    R GKQ+HAY++        E ++ ++++L+ 
Sbjct: 260 -RRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGF----EDNVFISSSLID 314

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           +Y KCG+++ A  IF++M   D+VSW A++  Y                           
Sbjct: 315 MYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGY--------------------------- 347

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV-HSG 448
               A +G   E L LF +M L   KP    F   +T+C+  G ++ G +    +  H G
Sbjct: 348 ----ALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYG 403

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGNGARAIELY 507
              +L    AL     R G ++ A    + M    + S W+ ++ A   H N   A E+ 
Sbjct: 404 IVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVA 463

Query: 508 EQMLKEGILPDRITFLTVLS 527
           +++++  + P  I    VLS
Sbjct: 464 KKIME--LEPRSIGSHVVLS 481



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 160/320 (50%), Gaps = 28/320 (8%)

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
           + + +CA  GL  LG  +HA  +R+ A     F+    NAL+ LY K             
Sbjct: 55  AALKSCAALGLSALGASLHALAIRSGAF-ADRFTA---NALLNLYCK------------- 97

Query: 347 MPERDLVSWN-AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKL 405
           +P   L S   AI+    S+   +  + +F+ M ER+++SW  ++ G A+ G   E L  
Sbjct: 98  VPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGF 157

Query: 406 FSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465
             +M  EGF+P  +  +  +   A    ++ G ++H     +G+DS +  G++LI MYA 
Sbjct: 158 VRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYAN 217

Query: 466 CGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTV 525
           C   + +  VF+ +P  D + WN+++A   Q+G+   A+ ++ +ML+ G+ P  +TF ++
Sbjct: 218 CTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSL 277

Query: 526 LSACNHAGLVKEGRRYFETMHGPYGIPPG-EDHY---ARFIDLLCRAGKFSEAKDVIDSL 581
           +  C +   ++ G++    +H  Y I  G ED+    +  ID+ C+ G+ S A  + D +
Sbjct: 278 IPVCGNLASLRFGKQ----LHA-YVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKM 332

Query: 582 PFKPSAPIWEALLAGCRIHG 601
              P    W A++ G  +HG
Sbjct: 333 S-SPDVVSWTAMIMGYALHG 351



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 103/255 (40%), Gaps = 31/255 (12%)

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGF--KPCDYAFAGAITSCAGLGALENGRQLHAQ 443
           W   I   A  G+  + + LF +MR           +   A+ SCA LG    G  LHA 
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75

Query: 444 LVHSGYDSSLSAGNALITMYARC--------GVV-----------EAANCVFNTMPNVDS 484
            + SG  +     NAL+ +Y +         GV            E+   VF+ M   D 
Sbjct: 76  AIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDV 135

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
           VSWN ++    + G    A+    +M +EG  PD  T  TVL        VK G      
Sbjct: 136 VSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLE---- 191

Query: 545 MHGPYGIPPGEDH----YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
           +HG +    G D      +  ID+     +   +  V D+LP +    +W +LLAGC  +
Sbjct: 192 VHG-FAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHI-LWNSLLAGCAQN 249

Query: 601 GNIDLGIQAAEQLFQ 615
           G+++  +    ++ Q
Sbjct: 250 GSVEEALGIFRRMLQ 264



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 47/181 (25%)

Query: 9   IRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVY 68
           +R +   ++S + +C   N  +    + +HA++I  GF+    I + LID+YCK  ++  
Sbjct: 267 VRPVPVTFSSLIPVCG--NLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISI 324

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           A  +FD++  PD+V+                                 + AMI  Y+ + 
Sbjct: 325 AHCIFDKMSSPDVVS---------------------------------WTAMIMGYALHG 351

Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL 188
               A+ LF  M   + KP++ TF +VL+A +            H  +V  G   F S+ 
Sbjct: 352 PAREALVLFERMELGNAKPNHITFLAVLTACS------------HAGLVDKGWKYFKSMS 399

Query: 189 N 189
           N
Sbjct: 400 N 400


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/444 (45%), Positives = 287/444 (64%)

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
           MPE+ LVS  A+++ Y   G+IDEA+ LF+ + ER+ + W VMI G AQ+G   EGL LF
Sbjct: 1   MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
            QM     +P +      +++C   GALE GR +H+ + ++G   ++  G +LI MY++C
Sbjct: 61  RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKC 120

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G +E A  VF  + N D V+WN+M+     HG    A+ L+++M   G  P  ITF+ VL
Sbjct: 121 GSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVL 180

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
           +AC+HAGLV EG ++F +M   YGI P  +HY   ++LL RAG   EA +++ ++     
Sbjct: 181 NACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQD 240

Query: 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKL 646
             +W  LL  CR+HGNI LG Q AE L      ++GTYVLLSN+YA  G W+  ARVR L
Sbjct: 241 PVLWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTL 300

Query: 647 MRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFV 706
           M++ G +KEPGCS IEV+NKVH FL  D  HP+++ +Y+ LE++   ++  GY P T  V
Sbjct: 301 MKESGFEKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIV 360

Query: 707 LHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGR 766
           LHD+E  QKE +L  HSEKLA+AFGL+    G T++++KNLR+C DCH   K +SK+ GR
Sbjct: 361 LHDLEDAQKERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGR 420

Query: 767 EIVVRDGKRFHHFRDGKCSCGDYW 790
           ++V+RD  RFHHF +G CSCGDYW
Sbjct: 421 KVVMRDRNRFHHFVNGLCSCGDYW 444



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 142/307 (46%), Gaps = 46/307 (14%)

Query: 220 MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL-------- 271
           MPE+  +S T M+T Y K   +D AR   DG+ E   + WN +I GY    L        
Sbjct: 1   MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60

Query: 272 -KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
            +ML  +++ +E T  +V+SAC  +G    G+ VH+Y+           ++ V  +L+ +
Sbjct: 61  RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYI----ENNGIGINVRVGTSLIDM 116

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y KCG + +AR +F ++  +D+V+WN+++  Y                            
Sbjct: 117 YSKCGSLEDARLVFERISNKDVVAWNSMVVGY---------------------------- 148

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GY 449
              A +G+ ++ L+LF +M + G++P D  F G + +C+  G +  G +    +    G 
Sbjct: 149 ---AMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWKFFYSMKDEYGI 205

Query: 450 DSSLSAGNALITMYARCGVVEAA-NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
           +  +     ++ +  R G +E A   V N   + D V W  ++ A   HGN A   ++ E
Sbjct: 206 EPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLHGNIALGEQIAE 265

Query: 509 QMLKEGI 515
            ++ + +
Sbjct: 266 YLVSQNL 272



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 156/345 (45%), Gaps = 43/345 (12%)

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P+  +V+ T +I  Y+    +  AR +F+   L+ RD + +N MI  Y+ +   +  + 
Sbjct: 1   MPEKSLVSLTAMITCYAKYGMIDEARVLFDG--LEERDAICWNVMIDGYAQHGLPNEGLL 58

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LFR M    V+P+  T  +VLSA       E     +H  +  +G G+   V  +LI +Y
Sbjct: 59  LFRQMLNAKVRPNEVTVLAVLSACGQTGALETG-RWVHSYIENNGIGINVRVGTSLIDMY 117

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY-LDAAREFLDGMSEN 254
            KC S         +  AR VF+ +  +D ++W +M+ GY  + +  DA R F +     
Sbjct: 118 SKCGS---------LEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKE----- 163

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
                             M M+  Q  + T+  V++AC+++GL   G +   Y ++ E  
Sbjct: 164 ------------------MCMIGYQPTDITFIGVLNACSHAGLVSEGWKFF-YSMKDEYG 204

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKS 373
             P+  +     +V L  + G + EA ++   M  ++D V W  +L A    G I   + 
Sbjct: 205 IEPK--VEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLHGNIALGEQ 262

Query: 374 LFEAMRERNLL---SWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           + E +  +NL    ++ ++ +  A  G  E   ++ + M+  GF+
Sbjct: 263 IAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESGFE 307


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/589 (39%), Positives = 345/589 (58%), Gaps = 46/589 (7%)

Query: 216 VFDEMPERDELSWTTMMTGYVKND-YLDAAREFLDGMSENVGVAWNALISGYV-HRELKM 273
           +F  +   D  S  T+++   ++  +L +ARE  D M +    AW+AL+SGY  H + + 
Sbjct: 85  LFSSIAAPDICSHNTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYTRHGQPEA 144

Query: 274 ---LMLRIQLD--------EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
              L  R+Q +        EFT +S ++A A +   R G+++H +++R            
Sbjct: 145 ALALYRRMQEEPGNDGADNEFTASSALAAAAAARCGRAGRELHCHVVR------------ 192

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
                             R I       D V W+A+   Y   G +D+A+ +F+ M  R+
Sbjct: 193 ------------------RGI--DAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRD 232

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQM-RLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
            +SWT M+      G G EG +LF  M R  G +P ++ +AG + +CA       GRQ+H
Sbjct: 233 AVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQVH 292

Query: 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGA 501
            ++  SG   S  A +AL+ MY++CG + +A  VF  M   D VSW A+I+   Q+G   
Sbjct: 293 GRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPE 352

Query: 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF 561
            A+  ++  L+ GI PD +TF+ VLSAC HAGLV +G   F ++   Y I    DHYA  
Sbjct: 353 EALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACV 412

Query: 562 IDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621
           IDLL R+G+F  A+ +I ++  KP+  +W +LL GCRIH N+ L  +AAE LF++ P + 
Sbjct: 413 IDLLSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENP 472

Query: 622 GTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQ 681
            TYV L+N+YA++G +D+   VR++M  +G+ K P  SWIEV  +VHVFLV D +HP+A 
Sbjct: 473 ATYVTLANIYASVGLFDEVEDVRRIMESKGITKMPASSWIEVGRRVHVFLVGDKSHPKAD 532

Query: 682 AVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATV 741
            +Y  L++L ++M + GYV D +FVLHD+E +QKE  +  HSE+LAVAFG++  P G+ +
Sbjct: 533 EIYALLKKLYVKMVEEGYVADIEFVLHDVEDEQKEQDIGYHSERLAVAFGIIATPEGSPI 592

Query: 742 RVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +V KNLRICGDCH A K +S++V R+I+VRD  RFHHF+DG CSC DYW
Sbjct: 593 KVFKNLRICGDCHAAIKLISQIVQRDIIVRDSNRFHHFKDGICSCRDYW 641



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 142/509 (27%), Positives = 217/509 (42%), Gaps = 92/509 (18%)

Query: 54  NRLIDIYCK-SLKLVYARTLFDEIPQPDIVARTTLIAAYSASD-NVKLAREMFNKTPLKM 111
           NRL+ +       L  A  LF  I  PDI +  TLI+A S S  ++  ARE+F++ P   
Sbjct: 66  NRLLHLLSSHPATLPDALALFSSIAAPDICSHNTLISALSRSPRHLPSARELFDRMP--Q 123

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRD--DVKPDNFTFTSVLSALALIVEEEKQC 169
           RD   ++A+++ Y+ +    AA+ L+R M+ +  +   DN    S   A A      +  
Sbjct: 124 RDHFAWSALVSGYTRHGQPEAALALYRRMQEEPGNDGADNEFTASSALAAAAAARCGRAG 183

Query: 170 MQMHCTVVKSG---TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDEL 226
            ++HC VV+ G    G    + +AL  +Y KC           +  ARRVFD MP RD +
Sbjct: 184 RELHCHVVRRGIDAAGGDAVLWSALADMYAKC---------GRVDDARRVFDRMPVRDAV 234

Query: 227 SWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLR---IQLDEF 283
           SWT M+  Y             DG     G              L + MLR   ++ +EF
Sbjct: 235 SWTAMVERY------------FDGGRGGEGF------------RLFLHMLRTRGVRPNEF 270

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
           TY  V+ ACA   +   G+QVH  +    AK     S    +AL+ +Y KCG +  A  +
Sbjct: 271 TYAGVLRACAQFAVESFGRQVHGRM----AKSGTGDSCFAESALLRMYSKCGDMGSAVRV 326

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
           F  M + DLVSW A++S Y                               AQNG  EE L
Sbjct: 327 FEAMAKPDLVSWTAVISGY-------------------------------AQNGQPEEAL 355

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL-HAQLVHSGYDSSLSAGNALITM 462
           + F      G KP    F G +++CA  G ++ G ++ H+       + +      +I +
Sbjct: 356 RYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDL 415

Query: 463 YARCGVVEAANCVFNTM---PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
            +R G  E A  +   M   PN     W +++     H N   A    E + +  I P+ 
Sbjct: 416 LSRSGQFERAEKMIGNMAVKPN--KFLWASLLGGCRIHKNVGLARRAAEALFE--IEPEN 471

Query: 520 -ITFLTVLSACNHAGL---VKEGRRYFET 544
             T++T+ +     GL   V++ RR  E+
Sbjct: 472 PATYVTLANIYASVGLFDEVEDVRRIMES 500



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 149/313 (47%), Gaps = 19/313 (6%)

Query: 339 EARDIFNQMPERDLVSWNAILSAYV-SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNG 397
           +A  +F+ +   D+ S N ++SA   S   +  A+ LF+ M +R+  +W+ ++SG  ++G
Sbjct: 81  DALALFSSIAAPDICSHNTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYTRHG 140

Query: 398 YGEEGLKLFSQMRLE-GFKPCDYAFAGAITSCAGLGAL--ENGRQLHAQLVHSGYDSSLS 454
             E  L L+ +M+ E G    D  F  +    A   A     GR+LH  +V  G D++  
Sbjct: 141 QPEAALALYRRMQEEPGNDGADNEFTASSALAAAAAARCGRAGRELHCHVVRRGIDAAGG 200

Query: 455 AG---NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
                +AL  MYA+CG V+ A  VF+ MP  D+VSW AM+      G G     L+  ML
Sbjct: 201 DAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHML 260

Query: 512 K-EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP-PGEDHYAR--FIDLLCR 567
           +  G+ P+  T+  VL AC    +   GR+    +HG       G+  +A    + +  +
Sbjct: 261 RTRGVRPNEFTYAGVLRACAQFAVESFGRQ----VHGRMAKSGTGDSCFAESALLRMYSK 316

Query: 568 AGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ--LMPHHAGTYV 625
            G    A  V +++  KP    W A+++G   +G  +  ++  +   +  + P H  T+V
Sbjct: 317 CGDMGSAVRVFEAMA-KPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHV-TFV 374

Query: 626 LLSNMYANLGRWD 638
            + +  A+ G  D
Sbjct: 375 GVLSACAHAGLVD 387


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 252/719 (35%), Positives = 386/719 (53%), Gaps = 82/719 (11%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           ++V    L+  YS    +  A+ +F     K  + V +N M+  +S   + H   ++ R 
Sbjct: 326 ELVLNNALMDMYSKCGCITNAQMIFKMNNNK--NVVSWNTMVGGFSAEGDTHGTFDVLRQ 383

Query: 140 MRR--DDVKPDNFTFTSVLSALALIVEEE--KQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           M    +DVK D  T   +L+A+ +   E       ++HC  +K        V NA ++ Y
Sbjct: 384 MLAGGEDVKADEVT---ILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASY 440

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            KC S  +         A+RVF  +  +   SW  ++ G+ +++     R  LD      
Sbjct: 441 AKCGSLSY---------AQRVFHGIRSKTVNSWNALIGGHAQSN---DPRLSLDA----- 483

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                          L+M +  +  D FT  S++SAC+     RLGK+VH +++R     
Sbjct: 484 --------------HLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRN---- 525

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
                           W                ERDL  + ++LS Y+  G +   ++LF
Sbjct: 526 ----------------W---------------LERDLFVYLSVLSLYIHCGELCTVQALF 554

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
           +AM +++L+SW  +I+G  QNG+ +  L +F QM L G + C  +      +C+ L +L 
Sbjct: 555 DAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLR 614

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            GR+ HA  +    +       +LI MYA+ G +  ++ VFN +    + SWNAMI   G
Sbjct: 615 LGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYG 674

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
            HG    AI+L+E+M + G  PD +TFL VL+ACNH+GL+ EG RY + M   +G+ P  
Sbjct: 675 IHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNL 734

Query: 556 DHYARFIDLLCRAGKFSEAKDVI-DSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
            HYA  ID+L RAG+  +A  V+ + +  +    IW++LL+ CRIH N+++G + A +LF
Sbjct: 735 KHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLF 794

Query: 615 QLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDD 674
           +L P     YVLLSN+YA LG+W+D  +VR+ M +  ++K+ GCSWIE++ KV  F+V +
Sbjct: 795 ELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGE 854

Query: 675 ---TAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFG 731
                  E ++++  LE   +++ K+GY PDT  V HD+  ++K   L  HSEKLA+ +G
Sbjct: 855 RFLDGFEEIKSLWSILE---MKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYG 911

Query: 732 LMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           L+K   G T+RV KNLRIC DCHNA K +SKV+ REIVVRD KRFHHF++G CSCGDYW
Sbjct: 912 LIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 154/662 (23%), Positives = 271/662 (40%), Gaps = 122/662 (18%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D V  T +I  Y+   +   +R +F+   L+ ++   +NA+I++YS N      +E F +
Sbjct: 119 DDVLCTRIITMYAMCGSPDDSRFVFD--ALRSKNLFQWNAVISSYSRNELYDEVLETFIE 176

Query: 140 M-RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
           M    D+ PD+FT+  V+ A A +  +    + +H  VVK+G      V NAL+S Y   
Sbjct: 177 MISTTDLLPDHFTYPCVIKACAGM-SDVGIGLAVHGLVVKTGLVEDVFVGNALVSFY--- 232

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
                  +   +  A ++FD MPER+ +SW +M+  +  N + + +   L  M E  G  
Sbjct: 233 ------GTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDG 286

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                                 D  T  +V+  CA      LGK VH + ++        
Sbjct: 287 ------------------AFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDK--- 325

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
             L +NNAL+ +Y KCG +  A+ IF     +++VSWN ++  + + G   +    F+ +
Sbjct: 326 -ELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEG---DTHGTFDVL 381

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
           R+        M++G      GE+             K  +     A+  C     L + +
Sbjct: 382 RQ--------MLAG------GED------------VKADEVTILNAVPVCFHESFLPSLK 415

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           +LH   +   +  +    NA +  YA+CG +  A  VF+ + +    SWNA+I    Q  
Sbjct: 416 ELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSN 475

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH- 557
           +   +++ + QM   G+LPD  T  ++LSAC+    ++ G+     +HG + I    +  
Sbjct: 476 DPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKE----VHG-FIIRNWLERD 530

Query: 558 ---YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL- 613
              Y   + L    G+    + + D++  K S   W  ++ G   +G  D  +    Q+ 
Sbjct: 531 LFVYLSVLSLYIHCGELCTVQALFDAMEDK-SLVSWNTVITGYLQNGFPDRALGVFRQMV 589

Query: 614 --------FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD---------------- 649
                     +MP      +L S     LGR   A  ++ L+ D                
Sbjct: 590 LYGIQLCGISMMPVFGACSLLPS---LRLGREAHAYALKHLLEDDAFIACSLIDMYAKNG 646

Query: 650 ---------RGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYV 700
                     G+K++   SW       +  ++    H  A+   K  E    EM++ G+ 
Sbjct: 647 SITQSSKVFNGLKEKSTASW-------NAMIMGYGIHGLAKEAIKLFE----EMQRTGHN 695

Query: 701 PD 702
           PD
Sbjct: 696 PD 697



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 103/443 (23%), Positives = 196/443 (44%), Gaps = 73/443 (16%)

Query: 60  YCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNA 119
           +  SLK ++  +L  E    ++VA    +A+Y+   ++  A+ +F+    K  ++  +NA
Sbjct: 410 FLPSLKELHCYSLKQEFVYNELVA-NAFVASYAKCGSLSYAQRVFHGIRSKTVNS--WNA 466

Query: 120 MITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKS 179
           +I  ++ +++   +++    M+   + PD+FT  S+LSA + + +  +   ++H  ++++
Sbjct: 467 LIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKL-KSLRLGKEVHGFIIRN 525

Query: 180 GTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND 239
                  V  +++S+Y+ C           +   + +FD M ++  +SW T++TGY++N 
Sbjct: 526 WLERDLFVYLSVLSLYIHCGE---------LCTVQALFDAMEDKSLVSWNTVITGYLQNG 576

Query: 240 YLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFR 299
           + D A          +GV              +M++  IQL   +   V  AC+     R
Sbjct: 577 FPDRA----------LGVF------------RQMVLYGIQLCGISMMPVFGACSLLPSLR 614

Query: 300 LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAIL 359
           LG++ HAY L    K   E    +  +L+ +Y K G + ++  +FN + E+   SWNA++
Sbjct: 615 LGREAHAYAL----KHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMI 670

Query: 360 SAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY 419
             Y   GL  EA                               +KLF +M+  G  P D 
Sbjct: 671 MGYGIHGLAKEA-------------------------------IKLFEEMQRTGHNPDDL 699

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAA-NCVFN 477
            F G +T+C   G +  G +   Q+  S G   +L     +I M  R G ++ A   V  
Sbjct: 700 TFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAE 759

Query: 478 TMPNVDSVS-WNAMIAALGQHGN 499
            M     V  W +++++   H N
Sbjct: 760 EMSEEADVGIWKSLLSSCRIHQN 782


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 248/687 (36%), Positives = 360/687 (52%), Gaps = 85/687 (12%)

Query: 113 DTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQM 172
           +   YN++I  + +N   H  ++LF  +R+  +    FTF  VL A        K  + +
Sbjct: 75  NIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTR-ASSRKLGIDL 133

Query: 173 HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMM 232
           H  VVK G     + + +L+S+Y         S    +  A ++FDE+P+R         
Sbjct: 134 HSLVVKCGFNHDVAAMTSLLSIY---------SGSGRLNDAHKLFDEIPDRSV------- 177

Query: 233 TGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV----HREL-----KMLMLRIQLDEF 283
                                   V W AL SGY     HRE      KM+ + ++ D +
Sbjct: 178 ------------------------VTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSY 213

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
               V+SAC + G    G+ +  Y+   E +        V   LV LY KCGK+ +AR  
Sbjct: 214 FIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNS----FVRTTLVNLYAKCGKMEKAR-- 267

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
                                        S+F++M E+++++W+ MI G A N + +EG+
Sbjct: 268 -----------------------------SVFDSMVEKDIVTWSTMIQGYASNSFPKEGI 298

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
           +LF QM  E  KP  ++  G ++SCA LGAL+ G    + +    + ++L   NALI MY
Sbjct: 299 ELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMY 358

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
           A+CG +     VF  M   D V  NA I+ L ++G+   +  ++ Q  K GI PD  TFL
Sbjct: 359 AKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFL 418

Query: 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF 583
            +L  C HAGL+++G R+F  +   Y +    +HY   +DL  RAG   +A  +I  +P 
Sbjct: 419 GLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPM 478

Query: 584 KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARV 643
           +P+A +W ALL+GCR+  +  L     ++L  L P +AG YV LSN+Y+  GRWD+AA V
Sbjct: 479 RPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEV 538

Query: 644 RKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDT 703
           R +M  +G+KK PG SWIE++ KVH FL DD +HP +  +Y  LE L  EMR +G+VP T
Sbjct: 539 RDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTT 598

Query: 704 KFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKV 763
           +FV  D+E ++KE  L  HSEKLAVA GL+    G  +RV+KNLR+CGDCH   K +SK+
Sbjct: 599 EFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKI 658

Query: 764 VGREIVVRDGKRFHHFRDGKCSCGDYW 790
             REIVVRD  RFH F +G CSC DYW
Sbjct: 659 TRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 119/492 (24%), Positives = 200/492 (40%), Gaps = 114/492 (23%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           +  L   +H+ ++  GF      +  L+ IY  S +L  A  LFDEIP   +V  T L +
Sbjct: 126 SRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFS 185

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
            Y+ S      RE                              AI+LF+ M    VKPD+
Sbjct: 186 GYTTSGR---HRE------------------------------AIDLFKKMVEMGVKPDS 212

Query: 150 FTFTSVLSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
           +    VLSA   + + +  + +  +   ++     F  V   L+++Y KC          
Sbjct: 213 YFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSF--VRTTLVNLYAKC---------G 261

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
            M  AR VFD M E+D ++W+TM+ GY  N +     E                      
Sbjct: 262 KMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELF-------------------- 301

Query: 269 RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALV 328
             L+ML   ++ D+F+    +S+CA+ G   LG+   + + R E       +L + NAL+
Sbjct: 302 --LQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLT----NLFMANALI 355

Query: 329 TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV 388
            +Y KCG +    ++F +M E+D+V  NA                               
Sbjct: 356 DMYAKCGAMARGFEVFKEMKEKDIVIMNA------------------------------- 384

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG-RQLHAQLVHS 447
            ISGLA+NG+ +    +F Q    G  P    F G +  C   G +++G R  +A     
Sbjct: 385 AISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVY 444

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAI-- 504
               ++     ++ ++ R G+++ A  +   MP   +++ W A+++       G R +  
Sbjct: 445 ALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLS-------GCRLVKD 497

Query: 505 -ELYEQMLKEGI 515
            +L E +LKE I
Sbjct: 498 TQLAETVLKELI 509



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 128/275 (46%), Gaps = 18/275 (6%)

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
           LF   +  N+  +  +I+G   N    E L LF  +R  G     + F   + +C    +
Sbjct: 67  LFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASS 126

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
            + G  LH+ +V  G++  ++A  +L+++Y+  G +  A+ +F+ +P+   V+W A+ + 
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSG 186

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR---RYFETMHGPYG 550
               G    AI+L+++M++ G+ PD    + VLSAC H G +  G    +Y E M     
Sbjct: 187 YTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQ-- 244

Query: 551 IPPGEDHYAR--FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
               ++ + R   ++L  + GK  +A+ V DS+  K     W  ++ G   +     GI+
Sbjct: 245 ----KNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVT-WSTMIQGYASNSFPKEGIE 299

Query: 609 AAEQLFQ--LMPHHAGTYVLLSNMYA----NLGRW 637
              Q+ Q  L P        LS+  +    +LG W
Sbjct: 300 LFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEW 334


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 240/724 (33%), Positives = 390/724 (53%), Gaps = 70/724 (9%)

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLARE-MFNKTPLKMRDTVFYNAMITAYSHN 127
           A+ L  +  +   ++ T+     S   N+KL  E +     L+    + + ++I  ++  
Sbjct: 24  AKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFTDQ 83

Query: 128 SNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSV 187
           S    A+  F +MR     PD+  F SVL +  ++++  +    +H  +V+ G       
Sbjct: 84  SLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL-RFGESVHGFIVRLGMDCDLYT 142

Query: 188 LNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND-YLDAARE 246
            NAL+++Y K +          + + R+VF+ MP +D +S+ T++ GY ++  Y DA R 
Sbjct: 143 GNALMNMYSKLLG---------IDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALR- 192

Query: 247 FLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
               M   +G +                   ++ D FT +SV+   +       GK++H 
Sbjct: 193 ----MVREMGTS------------------DLKPDAFTLSSVLPIFSEYVDVLKGKEIHG 230

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366
           Y++R       +  + + ++LV +Y K  +                              
Sbjct: 231 YVIR----KGIDSDVYIGSSLVDMYAKSAR------------------------------ 256

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
            I++++ +F  +  R+ +SW  +++G  QNG   E L+LF QM     +P   AF+  I 
Sbjct: 257 -IEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIP 315

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
           +CA L  L  G+QLH  ++  G+  ++   +AL+ MY++CG ++AA  +F+ M   D VS
Sbjct: 316 ACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVS 375

Query: 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546
           W A+I     HG+G  A+ L+E+M ++G+ P+++ F+ VL+AC+H GLV E   YF +M 
Sbjct: 376 WTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMT 435

Query: 547 GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLG 606
             YG+    +HYA   DLL RAGK  EA D I  +  +P+  +W  LL+ C +H N++L 
Sbjct: 436 KVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELA 495

Query: 607 IQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNK 666
            + AE++F +   + G YVL+ NMYA+ GRW + A++R  +R +G++K+P CSWIE+ NK
Sbjct: 496 EKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNK 555

Query: 667 VHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKL 726
            H F+  D +HP    + ++L+ ++ +M K GYV DT  VLHD++ + K   L  HSE+L
Sbjct: 556 THGFVSGDRSHPSMDRINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERL 615

Query: 727 AVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSC 786
           AVAFG++    G T+RV KN+RIC DCH A KF+SK+  REI+VRD  RFHHF  G CSC
Sbjct: 616 AVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGSCSC 675

Query: 787 GDYW 790
           GDYW
Sbjct: 676 GDYW 679



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 124/501 (24%), Positives = 213/501 (42%), Gaps = 108/501 (21%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
              SVH  ++  G     +  N L+++Y K L +   R +F+ +P+ D+V+  T+IA Y+
Sbjct: 123 FGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYA 182

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
            S        M+                            A+ + R+M   D+KPD FT 
Sbjct: 183 QSG-------MYED--------------------------ALRMVREMGTSDLKPDAFTL 209

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
           +SVL   +  V+  K   ++H  V++ G      + ++L+ +Y K       S+R  +  
Sbjct: 210 SSVLPIFSEYVDVLKG-KEIHGYVIRKGIDSDVYIGSSLVDMYAK-------SAR--IED 259

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKND-YLDAAREFLDGMSENVGVAWNALISGYVHREL 271
           + RVF  +  RD +SW +++ GYV+N  Y +A R F                        
Sbjct: 260 SERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLF-----------------------R 296

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
           +M+  +++     ++SVI ACA+     LGKQ+H Y+LR         ++ + +ALV +Y
Sbjct: 297 QMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGR----NIFIASALVDMY 352

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            KCG +  AR IF++M   D VSW AI+  +   G   EA SLFE               
Sbjct: 353 SKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFE--------------- 397

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYD 450
                           +M+ +G KP   AF   +T+C+ +G ++        +    G +
Sbjct: 398 ----------------EMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLN 441

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGNGARAIELYEQ 509
             L    A+  +  R G +E A    + M    + S W+ ++++   H N    +EL E+
Sbjct: 442 QELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKN----LELAEK 497

Query: 510 MLKEGILPDRITFLTVLSACN 530
           + ++    D       +  CN
Sbjct: 498 VAEKIFTIDSENMGAYVLMCN 518



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 33/129 (25%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           T  L + +H +++  GF     I + L+D+Y K   +  AR +FD               
Sbjct: 322 TLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDR-------------- 367

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
                              + + D V + A+I  ++ + +GH A+ LF +M+R  VKP+ 
Sbjct: 368 -------------------MNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQ 408

Query: 150 FTFTSVLSA 158
             F +VL+A
Sbjct: 409 VAFVAVLTA 417


>gi|297801640|ref|XP_002868704.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
 gi|297314540|gb|EFH44963.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 256/763 (33%), Positives = 383/763 (50%), Gaps = 108/763 (14%)

Query: 34  ARSVHAHMISSGFKPRE---HIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
             S+H H+I +    R    + IN LI++Y K  + V AR +FD +P+            
Sbjct: 50  GESIHGHLIVTNQSSRAKDVYQINSLINLYVKCGETVRARKVFDLMPE------------ 97

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMR-RDDVKPDN 149
                                R+ V + AM+  Y ++      ++LF+ M   D+ +P+ 
Sbjct: 98  ---------------------RNVVSWCAMMKGYQNSGFDFEVLKLFKSMVFSDESRPNE 136

Query: 150 FTFTSVLSALALI--VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSR 207
           F  T V  + +    +EE KQ    H   +KSG      V N L+ +Y  C  +      
Sbjct: 137 FVATVVFKSCSSSGRIEEGKQ---FHGCFLKSGLMSHEFVRNTLVYMYSLCSGN------ 187

Query: 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV 267
              G A RV D++P  D   +++ ++GY++        E L  M++              
Sbjct: 188 ---GEAIRVLDDLPYCDLSVFSSALSGYLECGAFKEGAEVLRRMAKE------------- 231

Query: 268 HRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327
                     + LD  TY S +  C+N     L +Q+H+ ++R       E S     A+
Sbjct: 232 ---------DLVLDNITYLSCLRLCSNLRDLNLARQIHSRMVRLGFNSEVEAS----GAI 278

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWT 387
           + +Y KCGKV  A+ +F+    +++V    I+ AY                         
Sbjct: 279 INMYGKCGKVLYAQRVFDNTHAQNIVLNTTIMDAYF------------------------ 314

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447
                  Q+   EE L LFS+M  +   P +Y FA ++ S A L  L++G  LH  ++ S
Sbjct: 315 -------QDKSFEEALNLFSKMDTKEVPPNEYTFAISLNSIAELSLLKHGDLLHGLVLKS 367

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
           GY + +  GNAL+ MYA+ G +E A   F+ M   D V+WN MI     HG G   +E +
Sbjct: 368 GYRNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMICGFSHHGLGREGLEAF 427

Query: 508 EQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR 567
           ++M+  G +P+RITF+ VL AC+H G V++G  YF  +   + + P   HY   + LL +
Sbjct: 428 DRMMIAGEIPNRITFIGVLQACSHVGFVEQGLYYFNQLMKKFNVQPDLQHYTCIVGLLSK 487

Query: 568 AGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627
           AG F +A+D + + P +     W ALL  C +  N  LG + AE      P+ +G YVLL
Sbjct: 488 AGMFKDAEDFMRTAPIEWDVVAWRALLNACYVRRNFRLGKKVAEYAIYKYPNDSGVYVLL 547

Query: 628 SNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYL 687
           SN++A    W+  A VR LM  RGVKKEPG SWI + N+ HVFL ++  HPE   +Y  +
Sbjct: 548 SNIHAKSREWEGVAEVRSLMNKRGVKKEPGVSWIGIRNQTHVFLAEENQHPEITLIYAKI 607

Query: 688 EQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNL 747
           ++++ ++R LGY PD   V HD++ +Q+E  LS HSEKLAVA+GLMK P  + + V KN+
Sbjct: 608 KEVLSKIRPLGYSPDVAGVFHDVDEEQREDNLSYHSEKLAVAYGLMKTPENSPLYVTKNV 667

Query: 748 RICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           RIC DCH+A K +SK+  R IV+RD  RFHHFRDG+CSC DYW
Sbjct: 668 RICDDCHSAIKLISKISKRYIVIRDSNRFHHFRDGQCSCCDYW 710



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 111/473 (23%), Positives = 202/473 (42%), Gaps = 58/473 (12%)

Query: 156 LSALALIVEEEKQCMQMHCTVVKSGTGLF-TSVLNALISVYVKCVSSPFV-SSRSLMGAA 213
           +SAL++I +   +  ++   V K    LF    LN L+ V   C +S ++ +  S+ G  
Sbjct: 1   MSALSVIEQRLLKWDKLASLVPKPKKPLFPIDRLNELLKV---CANSSYLRTGESIHGHL 57

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
                    +D     +++  YVK      AR+  D M E   V+W A++ GY +     
Sbjct: 58  IVTNQSSRAKDVYQINSLINLYVKCGETVRARKVFDLMPERNVVSWCAMMKGYQNSGFDF 117

Query: 274 LMLRI----------QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
            +L++          + +EF  T V  +C++SG    GKQ H   L++    + EF   V
Sbjct: 118 EVLKLFKSMVFSDESRPNEFVATVVFKSCSSSGRIEEGKQFHGCFLKS-GLMSHEF---V 173

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
            N LV +Y  C    EA  + + +P  DL  +++ LS Y+  G   E   +   M + +L
Sbjct: 174 RNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLECGAFKEGAEVLRRMAKEDL 233

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
           +                + +   S +RL                C+ L  L   RQ+H++
Sbjct: 234 VL---------------DNITYLSCLRL----------------CSNLRDLNLARQIHSR 262

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
           +V  G++S + A  A+I MY +CG V  A  VF+     + V    ++ A  Q  +   A
Sbjct: 263 MVRLGFNSEVEASGAIINMYGKCGKVLYAQRVFDNTHAQNIVLNTTIMDAYFQDKSFEEA 322

Query: 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA---R 560
           + L+ +M  + + P+  TF   L++     L+K G    + +HG        +H      
Sbjct: 323 LNLFSKMDTKEVPPNEYTFAISLNSIAELSLLKHG----DLLHGLVLKSGYRNHVMVGNA 378

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
            +++  ++G   +A+     + F+     W  ++ G   HG    G++A +++
Sbjct: 379 LVNMYAKSGSIEDARKAFSGMTFR-DIVTWNTMICGFSHHGLGREGLEAFDRM 430



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 143/347 (41%), Gaps = 71/347 (20%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y S L+LC   N    +LAR +H+ M+  GF         +I++Y K  K++YA+ +FD 
Sbjct: 240 YLSCLRLCS--NLRDLNLARQIHSRMVRLGFNSEVEASGAIINMYGKCGKVLYAQRVFDN 297

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
               +IV  TT++ AY                    +D  F                A+ 
Sbjct: 298 THAQNIVLNTTIMDAY-------------------FQDKSF--------------EEALN 324

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LF  M   +V P+ +TF   L+++A +    K    +H  V+KSG      V NAL+++Y
Sbjct: 325 LFSKMDTKEVPPNEYTFAISLNSIAEL-SLLKHGDLLHGLVLKSGYRNHVMVGNALVNMY 383

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            K  S         +  AR+ F  M  RD ++W TM+ G+  +       E  D M    
Sbjct: 384 AKSGS---------IEDARKAFSGMTFRDIVTWNTMICGFSHHGLGREGLEAFDRM---- 430

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                 +I+G +             +  T+  V+ AC++ G    G      L++   K 
Sbjct: 431 ------MIAGEIP------------NRITFIGVLQACSHVGFVEQGLYYFNQLMK---KF 469

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
             +  L     +V L  K G   +A D     P E D+V+W A+L+A
Sbjct: 470 NVQPDLQHYTCIVGLLSKAGMFKDAEDFMRTAPIEWDVVAWRALLNA 516


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 252/719 (35%), Positives = 386/719 (53%), Gaps = 82/719 (11%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           ++V    L+  YS    +  A+ +F     K  + V +N M+  +S   + H   ++ R 
Sbjct: 76  ELVLNNALMDMYSKCGCITNAQMIFKMNNNK--NVVSWNTMVGGFSAEGDTHGTFDVLRQ 133

Query: 140 MRR--DDVKPDNFTFTSVLSALALIVEEE--KQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           M    +DVK D  T   +L+A+ +   E       ++HC  +K        V NA ++ Y
Sbjct: 134 MLAGGEDVKADEVT---ILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASY 190

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            KC S  +         A+RVF  +  +   SW  ++ G+ +++     R  LD      
Sbjct: 191 AKCGSLSY---------AQRVFHGIRSKTVNSWNALIGGHAQSN---DPRLSLDA----- 233

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                          L+M +  +  D FT  S++SAC+     RLGK+VH +++R     
Sbjct: 234 --------------HLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRN---- 275

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
                           W                ERDL  + ++LS Y+  G +   ++LF
Sbjct: 276 ----------------W---------------LERDLFVYLSVLSLYIHCGELCTVQALF 304

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
           +AM +++L+SW  +I+G  QNG+ +  L +F QM L G + C  +      +C+ L +L 
Sbjct: 305 DAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLR 364

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            GR+ HA  +    +       +LI MYA+ G +  ++ VFN +    + SWNAMI   G
Sbjct: 365 LGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYG 424

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
            HG    AI+L+E+M + G  PD +TFL VL+ACNH+GL+ EG RY + M   +G+ P  
Sbjct: 425 IHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNL 484

Query: 556 DHYARFIDLLCRAGKFSEAKDVI-DSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
            HYA  ID+L RAG+  +A  V+ + +  +    IW++LL+ CRIH N+++G + A +LF
Sbjct: 485 KHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLF 544

Query: 615 QLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDD 674
           +L P     YVLLSN+YA LG+W+D  +VR+ M +  ++K+ GCSWIE++ KV  F+V +
Sbjct: 545 ELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGE 604

Query: 675 ---TAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFG 731
                  E ++++  LE   +++ K+GY PDT  V HD+  ++K   L  HSEKLA+ +G
Sbjct: 605 RFLDGFEEIKSLWSILE---MKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYG 661

Query: 732 LMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           L+K   G T+RV KNLRIC DCHNA K +SKV+ REIVVRD KRFHHF++G CSCGDYW
Sbjct: 662 LIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 720



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 115/517 (22%), Positives = 211/517 (40%), Gaps = 93/517 (17%)

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD----VKPDNFTFTSVLSALALIVEEEK 167
           R+ V +N+MI  +S N     +  L  +M  ++      PD  T  +VL   A     E+
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCA----RER 56

Query: 168 QC---MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERD 224
           +      +H   VK        + NAL+ +Y KC           +  A+ +F     ++
Sbjct: 57  EIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKC---------GCITNAQMIFKMNNNKN 107

Query: 225 ELSWTTMMTGYV----KNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQL 280
            +SW TM+ G+      +   D  R+ L G  +                        ++ 
Sbjct: 108 VVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGED------------------------VKA 143

Query: 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
           DE T  + +  C +       K++H Y L+ E      ++  V NA V  Y KCG ++ A
Sbjct: 144 DEVTILNAVPVCFHESFLPSLKELHCYSLKQEFV----YNELVANAFVASYAKCGSLSYA 199

Query: 341 RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGE 400
           + +F+ +  + + SWNA                               +I G AQ+    
Sbjct: 200 QRVFHGIRSKTVNSWNA-------------------------------LIGGHAQSNDPR 228

Query: 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALI 460
             L    QM++ G  P  +     +++C+ L +L  G+++H  ++ +  +  L    +++
Sbjct: 229 LSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVL 288

Query: 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI 520
           ++Y  CG +     +F+ M +   VSWN +I    Q+G   RA+ ++ QM+  GI    I
Sbjct: 289 SLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGI 348

Query: 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP--GEDHY--ARFIDLLCRAGKFSEAKD 576
           + + V  AC+    ++ GR         Y +     +D +     ID+  + G  +++  
Sbjct: 349 SMMPVFGACSLLPSLRLGREAH-----AYALKHLLEDDAFIACSLIDMYAKNGSITQSSK 403

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
           V + L  K +A  W A++ G  IHG     I+  E++
Sbjct: 404 VFNGLKEKSTAS-WNAMIMGYGIHGLAKEAIKLFEEM 439



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 103/443 (23%), Positives = 196/443 (44%), Gaps = 73/443 (16%)

Query: 60  YCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNA 119
           +  SLK ++  +L  E    ++VA    +A+Y+   ++  A+ +F+    K  ++  +NA
Sbjct: 160 FLPSLKELHCYSLKQEFVYNELVA-NAFVASYAKCGSLSYAQRVFHGIRSKTVNS--WNA 216

Query: 120 MITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKS 179
           +I  ++ +++   +++    M+   + PD+FT  S+LSA + + +  +   ++H  ++++
Sbjct: 217 LIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKL-KSLRLGKEVHGFIIRN 275

Query: 180 GTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND 239
                  V  +++S+Y+ C           +   + +FD M ++  +SW T++TGY++N 
Sbjct: 276 WLERDLFVYLSVLSLYIHCGE---------LCTVQALFDAMEDKSLVSWNTVITGYLQNG 326

Query: 240 YLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFR 299
           + D A          +GV              +M++  IQL   +   V  AC+     R
Sbjct: 327 FPDRA----------LGVF------------RQMVLYGIQLCGISMMPVFGACSLLPSLR 364

Query: 300 LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAIL 359
           LG++ HAY L    K   E    +  +L+ +Y K G + ++  +FN + E+   SWNA++
Sbjct: 365 LGREAHAYAL----KHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMI 420

Query: 360 SAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY 419
             Y   GL  EA                               +KLF +M+  G  P D 
Sbjct: 421 MGYGIHGLAKEA-------------------------------IKLFEEMQRTGHNPDDL 449

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAA-NCVFN 477
            F G +T+C   G +  G +   Q+  S G   +L     +I M  R G ++ A   V  
Sbjct: 450 TFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAE 509

Query: 478 TMPNVDSVS-WNAMIAALGQHGN 499
            M     V  W +++++   H N
Sbjct: 510 EMSEEADVGIWKSLLSSCRIHQN 532



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 112/518 (21%), Positives = 200/518 (38%), Gaps = 109/518 (21%)

Query: 223 RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDE 282
           R+ +SW +M+  +  N + + +   L  M E  G                        D 
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDG------------------AFMPDV 42

Query: 283 FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARD 342
            T  +V+  CA      LGK VH + ++          L +NNAL+ +Y KCG +  A+ 
Sbjct: 43  ATLVTVLPVCAREREIGLGKGVHGWAVKLRLDK----ELVLNNALMDMYSKCGCITNAQM 98

Query: 343 IFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG 402
           IF     +++VSWN ++  + + G   +    F+ +R+        M++G      GE+ 
Sbjct: 99  IFKMNNNKNVVSWNTMVGGFSAEG---DTHGTFDVLRQ--------MLAG------GED- 140

Query: 403 LKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITM 462
                       K  +     A+  C     L + ++LH   +   +  +    NA +  
Sbjct: 141 -----------VKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVAS 189

Query: 463 YARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF 522
           YA+CG +  A  VF+ + +    SWNA+I    Q  +   +++ + QM   G+LPD  T 
Sbjct: 190 YAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTV 249

Query: 523 LTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH----YARFIDLLCRAGKFSEAKDVI 578
            ++LSAC+    ++ G+     +HG + I    +     Y   + L    G+    + + 
Sbjct: 250 CSLLSACSKLKSLRLGKE----VHG-FIIRNWLERDLFVYLSVLSLYIHCGELCTVQALF 304

Query: 579 DSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL---------FQLMPHHAGTYVLLSN 629
           D++  K S   W  ++ G   +G  D  +    Q+           +MP      +L S 
Sbjct: 305 DAMEDK-SLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPS- 362

Query: 630 MYANLGRWDDAARVRKLMRD-------------------------RGVKKEPGCSWIEVD 664
               LGR   A  ++ L+ D                          G+K++   SW    
Sbjct: 363 --LRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASW---- 416

Query: 665 NKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPD 702
              +  ++    H  A+   K  E    EM++ G+ PD
Sbjct: 417 ---NAMIMGYGIHGLAKEAIKLFE----EMQRTGHNPD 447


>gi|5280987|emb|CAB46001.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268109|emb|CAB78447.1| hypothetical protein [Arabidopsis thaliana]
          Length = 686

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/645 (35%), Positives = 361/645 (55%), Gaps = 58/645 (8%)

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           F F S  S +   +   K    +H  +VK G      + N L++VY KC ++        
Sbjct: 74  FDFGSYFSRMNRTLTTAKA---LHAHIVKLGIVQCCPLANTLVNVYGKCGAA-------- 122

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
              A +VFDEMP RD ++W +++T   + +        L G +                 
Sbjct: 123 -SHALQVFDEMPHRDHIAWASVLTALNQAN--------LSGKT-------------LSVF 160

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
                   ++ D+F +++++ ACAN G    G+QVH + + +E          V ++LV 
Sbjct: 161 SSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDE----VVKSSLVD 216

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           +Y KCG +N A+ +F+ +  ++ +SW A++S Y  +G  +EA  LF  +  +NL SWT +
Sbjct: 217 MYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTAL 276

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCD-YAFAGAITSCAGLGALENGRQLHAQLVHSG 448
           ISG  Q+G G E   +F++MR E     D    +  + +CA L A   GRQ+H       
Sbjct: 277 ISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVH------- 329

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
                  GNALI MYA+C  V AA  +F+ M + D VSW ++I  + QHG   +A+ LY+
Sbjct: 330 -------GNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYD 382

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568
            M+  G+ P+ +TF+ ++ AC+H G V++GR  F++M   YGI P   HY   +DLL R+
Sbjct: 383 DMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRS 442

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL---FQLMPHHAGTYV 625
           G   EA+++I ++PF P  P W ALL+ C+  G   +GI+ A+ L   F+L      TY+
Sbjct: 443 GLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKL--KDPSTYI 500

Query: 626 LLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYK 685
           LLSN+YA+   W   +  R+ + +  V+K+PG S +EV  +  VF   +T+HP  + +++
Sbjct: 501 LLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFR 560

Query: 686 YLEQLVLEMR-KLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVL 744
            L++L  EMR + GYVPDT ++LHDM+  +KE  L  HSE+ AVA+GL+K   G  +R++
Sbjct: 561 LLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIV 620

Query: 745 KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
           KNLR+CGDCH   K +S++  REI+VRD  R+HHF+ GKCSC D+
Sbjct: 621 KNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDF 665



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 134/532 (25%), Positives = 230/532 (43%), Gaps = 108/532 (20%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           T + A+++HAH++  G      + N L+++Y K     +A  +FDE+P  D +A  +++ 
Sbjct: 86  TLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLT 145

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
           A + +                                N +G              ++PD+
Sbjct: 146 ALNQA--------------------------------NLSGKTLSVFSSVGSSSGLRPDD 173

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           F F++++ A A +   +    Q+HC  + S       V ++L+ +Y KC          L
Sbjct: 174 FVFSALVKACANLGSID-HGRQVHCHFIVSEYANDEVVKSSLVDMYAKC---------GL 223

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           + +A+ VFD +  ++ +SWT M++GY K+   + A E    +      +W ALISG+V  
Sbjct: 224 LNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQS 283

Query: 270 -----------ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                      E++   + I LD    +S++ ACAN      G+QVH             
Sbjct: 284 GKGLEAFSVFTEMRRERVDI-LDPLVLSSIVGACANLAASIAGRQVHG------------ 330

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
                 NAL+ +Y KC  V  A+DIF++M  RD+VSW                       
Sbjct: 331 ------NALIDMYAKCSDVIAAKDIFSRMRHRDVVSW----------------------- 361

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
                   T +I G+AQ+G  E+ L L+  M   G KP +  F G I +C+ +G +E GR
Sbjct: 362 --------TSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGR 413

Query: 439 QLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQ 496
           +L   +    G   SL     L+ +  R G+++ A  + +TMP   D  +W A+++A  +
Sbjct: 414 ELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKR 473

Query: 497 HGNGARAIELYEQMLKEGILPDRITFL---TVLSACNHAGLVKEGRRYFETM 545
            G G   I + + ++    L D  T++    + ++ +  G V E RR    M
Sbjct: 474 QGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEM 525


>gi|302802806|ref|XP_002983157.1| hypothetical protein SELMODRAFT_117419 [Selaginella moellendorffii]
 gi|300149310|gb|EFJ15966.1| hypothetical protein SELMODRAFT_117419 [Selaginella moellendorffii]
          Length = 704

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 247/741 (33%), Positives = 408/741 (55%), Gaps = 44/741 (5%)

Query: 57  IDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVF 116
           + +Y ++  L  A+ +FD+IP  ++V+  +LIA +S    +  A E+F + P     +  
Sbjct: 1   MQVYSENGDLGSAKAIFDQIPSHNVVSWNSLIAGFSQHGFMSNADEIFARMPRWSSSS-- 58

Query: 117 YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIV--EEEKQCMQMHC 174
           +N+MIT Y+ + +   A  +F      D  P++    +V+S  ALI    + +   +   
Sbjct: 59  WNSMITGYAQSGDLAGATAMF------DRTPEH----NVISWNALITGYSDNRMIPEAKG 108

Query: 175 TVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTG 234
            +            NAL+S Y +            +  AR  F+ MP  D ++WT ++  
Sbjct: 109 VIFDEMPRREEVSWNALLSAYAQA---------GHVHLARSTFERMPRHDVVAWTALIAV 159

Query: 235 YVKNDYLDAAREFLDGMSENVGVAWNALISGY-VHREL----KMLMLRIQLDEFTYTSVI 289
             +N  L+ A    D + E   VAW ALI  Y V+ +L    ++  L  + +  ++T++I
Sbjct: 160 SGQNGQLEEAEVLYDLIPERDLVAWTALIQAYGVNGQLTESKRVYALMPERNRVSHTAMI 219

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
            A + +G     +++       +  P P+ S     +++  Y + G + +AR++F+ +  
Sbjct: 220 IAYSQNGEVVQARKM------LDTLPDPDQS--TRTSMIVAYAQNGYIKDAREMFDSIKN 271

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
            D+++ NA++ AY SA ++D AK++F++++++ L+SW  M++  AQ G  +E   +F  +
Sbjct: 272 PDVIACNAMMEAYSSAQMLDHAKAMFDSIKQKTLVSWNTMVAAYAQAGNLDEAKSIFDSI 331

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
             +     +      + + A    L   R++     +S  +       A++ M A+ G +
Sbjct: 332 PHKNVVSHNVM----VVAYAHNMDLAEARRI----FYSMDEKDTVTWTAMVAMLAQHGRL 383

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
             A  +F  MP  + VSWN++IA +   G+G  A+     M  EG  PD ITF+ +L AC
Sbjct: 384 AEAQELFAKMPYRNVVSWNSLIAGMASCGHGMAAVRYLYVMRNEGAKPDHITFMGILIAC 443

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
           +H GLV+EG  +F +M G +G+ P  +HY R +D+L RAG+   A+++++++PF P    
Sbjct: 444 SHVGLVEEGWTHFTSMQGDHGLIPWREHYCRMVDVLGRAGQLGAARELLETMPFIPDVGA 503

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
           W +LL  C+ H ++ LG +AAE L Q     +G YVLL+NMY+++GR  DA  VR  M+ 
Sbjct: 504 WGSLLGSCKTHSDVKLGTRAAESLLQFDDQSSGPYVLLANMYSSVGRVADALAVRNRMKA 563

Query: 650 RGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHD 709
           RGVKK+PG S I VD  +H F+  + +HP  Q +   L +L   M+K GY PDTK VLH 
Sbjct: 564 RGVKKQPGVSLIRVDGVLHRFVAGEASHPRHQEILSELSRLQELMKKAGYQPDTKAVLHS 623

Query: 710 MESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIV 769
           +  ++KE  LS HSEKLA+AF  +    G  +R++KNLR+C DCH A KF+SK++ REI+
Sbjct: 624 VLDEEKEVLLSYHSEKLAIAFASIACEPGTPIRIMKNLRVCSDCHTATKFLSKLLQREII 683

Query: 770 VRDGKRFHHFRDGKCSCGDYW 790
           VRDG RFH+F +G CSCGDYW
Sbjct: 684 VRDGYRFHNFENGTCSCGDYW 704



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 125/487 (25%), Positives = 222/487 (45%), Gaps = 56/487 (11%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLARE-MFNKTPLKMR 112
           N +I  Y +S  L  A  +FD  P+ ++++   LI  YS +  +  A+  +F++ P   R
Sbjct: 60  NSMITGYAQSGDLAGATAMFDRTPEHNVISWNALITGYSDNRMIPEAKGVIFDEMP--RR 117

Query: 113 DTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEE------- 165
           + V +NA+++AY+   + H A   F  M R DV    +T    +S     +EE       
Sbjct: 118 EEVSWNALLSAYAQAGHVHLARSTFERMPRHDVVA--WTALIAVSGQNGQLEEAEVLYDL 175

Query: 166 --EKQCMQMHCTVVKSGT-GLFTSV--LNALISVYVKCVSSPFVSSRSLMG---AARRVF 217
             E+  +     +   G  G  T    + AL+    +   +  + + S  G    AR++ 
Sbjct: 176 IPERDLVAWTALIQAYGVNGQLTESKRVYALMPERNRVSHTAMIIAYSQNGEVVQARKML 235

Query: 218 DEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL----KM 273
           D +P+ D+ + T+M+  Y +N Y+  ARE  D +     +A NA++  Y   ++    K 
Sbjct: 236 DTLPDPDQSTRTSMIVAYAQNGYIKDAREMFDSIKNPDVIACNAMMEAYSSAQMLDHAKA 295

Query: 274 LMLRI-QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           +   I Q    ++ ++++A A +G     K +            P  ++  +N +V  Y 
Sbjct: 296 MFDSIKQKTLVSWNTMVAAYAQAGNLDEAKSIF--------DSIPHKNVVSHNVMVVAYA 347

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
               + EAR IF  M E+D V+W A+++     G + EA+ LF  M  RN++SW  +I+G
Sbjct: 348 HNMDLAEARRIFYSMDEKDTVTWTAMVAMLAQHGRLAEAQELFAKMPYRNVVSWNSLIAG 407

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
           +A  G+G   ++    MR EG KP    F G + +C+ +G +E G           + +S
Sbjct: 408 MASCGHGMAAVRYLYVMRNEGAKPDHITFMGILIACSHVGLVEEGWT---------HFTS 458

Query: 453 LSAGNALIT----------MYARCGVVEAANCVFNTMPNVDSV-SWNAMIAALGQHGN-- 499
           +   + LI           +  R G + AA  +  TMP +  V +W +++ +   H +  
Sbjct: 459 MQGDHGLIPWREHYCRMVDVLGRAGQLGAARELLETMPFIPDVGAWGSLLGSCKTHSDVK 518

Query: 500 -GARAIE 505
            G RA E
Sbjct: 519 LGTRAAE 525


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/522 (40%), Positives = 325/522 (62%), Gaps = 10/522 (1%)

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
           +++L  +I  +EFT++S++ +C+     + GK +H ++L+      P     V   LV +
Sbjct: 117 VQLLSSQINPNEFTFSSILKSCST----KSGKLIHTHVLKFGLGLDPY----VATGLVDI 168

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y K G V  A+ +F++MPER LVS  A+++ Y   G ++ A++LF+ M ER+++SW VMI
Sbjct: 169 YAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMI 228

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGF-KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
            G +Q+G+  + L LF ++  +G  KP +     A+++C+ +GALE GR +H  +  S  
Sbjct: 229 DGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRI 288

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
             ++    ALI MY++CG +E A  VFN  P  D V+WNAMI     HG    A+ L+++
Sbjct: 289 RLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDE 348

Query: 510 MLK-EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568
           M    G+ P  ITF+  L AC HAGLV EG + FE+M   YGI P  +HY   + LL RA
Sbjct: 349 MQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRA 408

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628
           G+   A ++I ++  +  + +W ++L  C++HG   LG + AE L      ++G YVLLS
Sbjct: 409 GQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIYVLLS 468

Query: 629 NMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLE 688
           N+YA +G ++  A+VR LM+++G+ KEPG S IE+DNKVH F   D  H +++ +Y  L 
Sbjct: 469 NIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAGDREHLKSKEIYTMLR 528

Query: 689 QLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLR 748
           ++   ++  GYVP+T  VLHD+E  +KE +L  HSE+LA+A+GL+    G+ +++ KNLR
Sbjct: 529 KMSERIKSHGYVPNTNTVLHDLEETEKERSLQVHSERLAIAYGLISTKPGSPLKIFKNLR 588

Query: 749 ICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +C DCH   K +SK+ GR+IV+RD  RFHHF DG CSC D+W
Sbjct: 589 VCSDCHTVTKLISKITGRKIVMRDRNRFHHFSDGSCSCDDFW 630



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 120/441 (27%), Positives = 200/441 (45%), Gaps = 68/441 (15%)

Query: 90  AYSASDNVKLAREMFNKT--PLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147
           AY++   ++ +  +F++T  P    D   + A I   S N     A  L+  +    + P
Sbjct: 71  AYASHGKIRHSLALFHQTIDP----DLFLFTAAINTASINGLKDQAFLLYVQLLSSQINP 126

Query: 148 DNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSR 207
           + FTF+S+L + +      K    +H  V+K G GL   V   L+ +Y K      VS  
Sbjct: 127 NEFTFSSILKSCS-----TKSGKLIHTHVLKFGLGLDPYVATGLVDIYAK--GGDVVS-- 177

Query: 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV 267
                A++VFD MPER  +S T M+T Y K   ++AAR   D M E   V+WN +I GY 
Sbjct: 178 -----AQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYS 232

Query: 268 HREL--KMLMLRIQL--------DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                   LML  +L        DE T  + +SAC+  G    G+ +H ++  +  +   
Sbjct: 233 QHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIR--- 289

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
             ++ V  AL+ +Y KCG + EA  +FN  P +D+V+WNA+++ Y               
Sbjct: 290 -LNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGY--------------- 333

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR-LEGFKPCDYAFAGAITSCAGLGALEN 436
                           A +GY ++ L+LF +M+ + G +P D  F G + +CA  G +  
Sbjct: 334 ----------------AMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNE 377

Query: 437 GRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAAL 494
           G Q+   +    G    +     L+++  R G ++ A  +   M    DSV W++++ + 
Sbjct: 378 GIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSC 437

Query: 495 GQHGNGARAIELYEQMLKEGI 515
             HG      E+ E ++ + I
Sbjct: 438 KLHGEFMLGKEIAEYLIGQNI 458



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 166/371 (44%), Gaps = 46/371 (12%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           ++S L+ C  ++       + +H H++  G     ++   L+DIY K   +V A+ +FD 
Sbjct: 131 FSSILKSCSTKS------GKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDR 184

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P+  +V+ T +I  Y+   NV+ AR +F++  +  RD V +N MI  YS +     A+ 
Sbjct: 185 MPERSLVSSTAMITCYAKQGNVEAARALFDR--MCERDIVSWNVMIDGYSQHGFPSDALM 242

Query: 136 LFRDMRRD-DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
           LF+ +  D   KPD  T  + LSA + I   E     +H  V  S   L   V  ALI +
Sbjct: 243 LFQKLLADGKPKPDEITVVAALSACSQIGALETG-RWIHVFVNSSRIRLNVKVCTALIDM 301

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           Y KC S         +  A  VF++ P +D ++W  M+TGY  + Y   A    D M   
Sbjct: 302 YSKCGS---------LEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGI 352

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA- 313
            G                     +Q  + T+   + ACA++GL   G Q+   + +    
Sbjct: 353 TG---------------------LQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGI 391

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAK 372
           KP  E        LV+L  + G++  A +I   M  E D V W+++L +    G     K
Sbjct: 392 KPKIEHY----GCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGK 447

Query: 373 SLFEAMRERNL 383
            + E +  +N+
Sbjct: 448 EIAEYLIGQNI 458



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 120/273 (43%), Gaps = 38/273 (13%)

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
           AY S G I  + +LF    + +L  +T  I+  + NG  ++   L+ Q+      P ++ 
Sbjct: 71  AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFT 130

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGY------------------------------- 449
           F+  + SC    + ++G+ +H  ++  G                                
Sbjct: 131 FSSILKSC----STKSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMP 186

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
           + SL +  A+IT YA+ G VEAA  +F+ M   D VSWN MI    QHG  + A+ L+++
Sbjct: 187 ERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQK 246

Query: 510 MLKEGI-LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568
           +L +G   PD IT +  LSAC+  G ++ G R+         I          ID+  + 
Sbjct: 247 LLADGKPKPDEITVVAALSACSQIGALETG-RWIHVFVNSSRIRLNVKVCTALIDMYSKC 305

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
           G   EA  V +  P K     W A++ G  +HG
Sbjct: 306 GSLEEAVLVFNDTPRKDIVA-WNAMITGYAMHG 337



 Score = 40.8 bits (94), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 95/224 (42%), Gaps = 27/224 (12%)

Query: 463 YARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF 522
           YA  G +  +  +F+   + D   + A I     +G   +A  LY Q+L   I P+  TF
Sbjct: 72  YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTF 131

Query: 523 LTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR--FIDLLCRAGKFSEAKDVIDS 580
            ++L +C+     K G +   T    +G+  G D Y     +D+  + G    A+ V D 
Sbjct: 132 SSILKSCS----TKSG-KLIHTHVLKFGL--GLDPYVATGLVDIYAKGGDVVSAQKVFDR 184

Query: 581 LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM-PHHAGTYVLLSNMYANLGRWDD 639
           +P + S     A++      GN    ++AA  LF  M      ++ ++ + Y+  G   D
Sbjct: 185 MPER-SLVSSTAMITCYAKQGN----VEAARALFDRMCERDIVSWNVMIDGYSQHGFPSD 239

Query: 640 AARV-RKLMRDRGVKKE--------PGCSWI---EVDNKVHVFL 671
           A  + +KL+ D   K +          CS I   E    +HVF+
Sbjct: 240 ALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFV 283


>gi|296085848|emb|CBI31172.3| unnamed protein product [Vitis vinifera]
          Length = 644

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/668 (34%), Positives = 362/668 (54%), Gaps = 81/668 (12%)

Query: 163 VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE 222
           V+ + Q  Q+H  ++++      S+L+ ++S+Y         S+ +L+  +  +F+ +P 
Sbjct: 18  VKSKSQAKQLHAQILRTSLP-SPSLLSTILSIY---------SNLNLLHDSLLIFNSLPS 67

Query: 223 R-DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLD 281
               L+W +++  Y  +     +  F                       ++ML      D
Sbjct: 68  PPTTLAWKSIIRCYTSHGLFLHSLSFF----------------------IQMLASGKYPD 105

Query: 282 EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY---WKCGKVN 338
              + SV+ +C      R G+ VH  ++R        F L   NAL+ +Y   W   +VN
Sbjct: 106 HNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMG----FDLYTCNALMNMYSKFWSLEEVN 161

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGY 398
             + +F++    D+ S     S Y+ +      + +FE M +R+++SW  +ISG AQNG 
Sbjct: 162 TYKKVFDEGKTSDVYSKKEKESYYLGS-----LRKVFEMMPKRDIVSWNTVISGNAQNGM 216

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
            E+ L +  +M     +P  +  +  +   A    L  G+++H   + +GYD+ +  G++
Sbjct: 217 HEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSS 276

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML------- 511
           LI MYA+C  V+ +  VF  +P  D +SWN++IA   Q+G     ++ ++QML       
Sbjct: 277 LIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPN 336

Query: 512 -----------------------------KEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
                                         EG+ P+ + F+ VL+AC+HAGLV E  +YF
Sbjct: 337 HVSFSSIMPACAHLTTLHLGKQLHGYIIRMEGVKPNYVAFMAVLTACSHAGLVDEAWKYF 396

Query: 543 ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
            +M   Y I PG +HYA   DLL R G+  EA + I  +  +P+  +W  LLA CR+H N
Sbjct: 397 NSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKN 456

Query: 603 IDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIE 662
           I+L  + +++LF + P + G YVLLSN+Y+  GRW DA ++R  MRD+G+KK+P CSWIE
Sbjct: 457 IELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIE 516

Query: 663 VDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTH 722
           + NKVH F+  D +HP    + + L+ L+ +M + GYV DT  VLHD+E +QK Y L +H
Sbjct: 517 IKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSH 576

Query: 723 SEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDG 782
           SE+LA+ FG++  P G T+RV KNLR+C DCH A KF+SK+VGREIVVRD  RFHHF+DG
Sbjct: 577 SERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISKIVGREIVVRDNSRFHHFKDG 636

Query: 783 KCSCGDYW 790
           KCSCGD+W
Sbjct: 637 KCSCGDFW 644



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 123/490 (25%), Positives = 220/490 (44%), Gaps = 88/490 (17%)

Query: 65  KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
           K ++A+ L   +P P ++  +T+++ YS  + +  +  +FN  P     T+ + ++I  Y
Sbjct: 25  KQLHAQILRTSLPSPSLL--STILSIYSNLNLLHDSLLIFNSLP-SPPTTLAWKSIIRCY 81

Query: 125 SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLF 184
           + +     ++  F  M      PD+  F SVL +  L+ ++ +    +H  +++ G G  
Sbjct: 82  TSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLM-KDLRFGESVHGCIIRLGMGFD 140

Query: 185 TSVLNALISVYVKCVSSPFVSSRS--------------------LMGAARRVFDEMPERD 224
               NAL+++Y K  S   V++                       +G+ R+VF+ MP+RD
Sbjct: 141 LYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRD 200

Query: 225 ELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFT 284
            +SW T+++G  +N           GM E      +AL+   + RE+    LR   D FT
Sbjct: 201 IVSWNTVISGNAQN-----------GMHE------DALM---MVREMGNADLRP--DSFT 238

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
            +SV+   A       GK++H Y +R       +  + + ++L+ +Y KC +V+++  +F
Sbjct: 239 LSSVLPIFAEYVNLLKGKEIHGYAIRNGY----DADVFIGSSLIDMYAKCTRVDDSCRVF 294

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
             +P+ D +SWN+I++  V  G+ D                               EGLK
Sbjct: 295 YMLPQHDGISWNSIIAGCVQNGMFD-------------------------------EGLK 323

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH-SGYDSSLSAGNALITMY 463
            F QM +   KP   +F+  + +CA L  L  G+QLH  ++   G   +  A  A++T  
Sbjct: 324 FFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRMEGVKPNYVAFMAVLTAC 383

Query: 464 ARCGVVEAANCVFNTMPN----VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           +  G+V+ A   FN+M      +  +   A +A L   G   R  E YE +    I P  
Sbjct: 384 SHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADL--LGRVGRLEEAYEFISDMHIEPTG 441

Query: 520 ITFLTVLSAC 529
             + T+L+AC
Sbjct: 442 SVWSTLLAAC 451



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 102/424 (24%), Positives = 178/424 (41%), Gaps = 88/424 (20%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYART-- 71
           N + S L+ C     +      SVH  +I  G     +  N L+++Y K   L    T  
Sbjct: 107 NVFPSVLKSCTLMKDL--RFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYK 164

Query: 72  -LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNG 130
            +FDE    D+ ++    + Y  S      R++F   P   RD V +N +I+  + N   
Sbjct: 165 KVFDEGKTSDVYSKKEKESYYLGS-----LRKVFEMMP--KRDIVSWNTVISGNAQNGMH 217

Query: 131 HAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNA 190
             A+ + R+M   D++PD+FT +SVL   A  V   K   ++H   +++G      + ++
Sbjct: 218 EDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKG-KEIHGYAIRNGYDADVFIGSS 276

Query: 191 LISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDG 250
           LI +Y KC           +  + RVF  +P+ D +SW +++ G V+N   D   +F   
Sbjct: 277 LIDMYAKCTR---------VDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQ- 326

Query: 251 MSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
                                +ML+ +I+ +  +++S++ ACA+     LGKQ+H Y++R
Sbjct: 327 ---------------------QMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIR 365

Query: 311 TEA-KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLID 369
            E  KP                                   + V++ A+L+A   AGL+D
Sbjct: 366 MEGVKP-----------------------------------NYVAFMAVLTACSHAGLVD 390

Query: 370 EAKSLFEAMRER-----NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
           EA   F +M +       L  +  +   L + G  EE  +  S M +E   P    ++  
Sbjct: 391 EAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIE---PTGSVWSTL 447

Query: 425 ITSC 428
           + +C
Sbjct: 448 LAAC 451


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/456 (44%), Positives = 288/456 (63%)

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
           G V  A+ +F+ MPE+ LVS  A+L+ Y   G +D A+ LF+ M ER+ + W VMI G  
Sbjct: 107 GDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYT 166

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
           QNG   E L LF +M     KP +      +++C  LGALE+GR +H+ + ++G   ++ 
Sbjct: 167 QNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVH 226

Query: 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
            G AL+ MY++CG +E A  VF+ + + D V+WN+MI     HG    A++L++ M + G
Sbjct: 227 VGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMG 286

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
           + P  ITF+ +LSAC H+G V EG   F  M   YGI P  +HY   ++LL RAG   +A
Sbjct: 287 LHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQA 346

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL 634
            +++ ++  +P   +W  LL  CR+HG I LG +  E L      ++GTY+LLSN+YA +
Sbjct: 347 YELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAV 406

Query: 635 GRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEM 694
           G WD  AR+R +M+D GVKKEPGCS IEV+NKVH FL     HP+ + +Y  LE++   +
Sbjct: 407 GNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWL 466

Query: 695 RKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCH 754
           +  GY P T  VLHD+   +KE +L  HSEKLA+AFGL+    G T++++KNLR+C DCH
Sbjct: 467 KSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCH 526

Query: 755 NAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
              K +SK+ GR+IVVRD  RFHHF +G CSCGDYW
Sbjct: 527 EVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 562



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 147/315 (46%), Gaps = 46/315 (14%)

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
           +A+++FD MPE+  +S T M+T Y K+  LDAAR   DGM E  GV WN +I GY    +
Sbjct: 111 SAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGM 170

Query: 272 ---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
                    +ML  + + +E T  SV+SAC   G    G+ VH+Y+         +F++ 
Sbjct: 171 PNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYI----ENNGIQFNVH 226

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
           V  ALV +Y KCG + +AR +F+++ ++D+V+WN+++  Y   G                
Sbjct: 227 VGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHG---------------- 270

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
                          + +E L+LF  M   G  P +  F G +++C   G +  G  +  
Sbjct: 271 ---------------FSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFN 315

Query: 443 QLVHS-GYDSSLSAGNALITMYARCGVVEAA-NCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           ++    G +  +     ++ +  R G VE A   V N     D V W  ++ A   HG  
Sbjct: 316 KMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKI 375

Query: 501 ARAIELYEQMLKEGI 515
           A   ++ E ++ + +
Sbjct: 376 ALGEKIVELLVDQNL 390



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 141/319 (44%), Gaps = 38/319 (11%)

Query: 66  LVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYS 125
           +V A+ LFD +P+  +V+ T ++  Y+    +  AR +F+   ++ RD V +N MI  Y+
Sbjct: 109 VVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDG--MEERDGVCWNVMIDGYT 166

Query: 126 HNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFT 185
            N   + A+ LFR M +   KP+  T  SVLSA   +   E     +H  +  +G     
Sbjct: 167 QNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQFNV 225

Query: 186 SVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245
            V  AL+ +Y KC S         +  AR VFD++ ++D ++W +M+ GY  + +   A 
Sbjct: 226 HVGTALVDMYSKCGS---------LEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEAL 276

Query: 246 EFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
           +    M                        + +     T+  ++SAC +SG    G  + 
Sbjct: 277 QLFKSMCR----------------------MGLHPTNITFIGILSACGHSGWVTEGWDIF 314

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVS 364
              ++ E    P+  +     +V L  + G V +A ++   M  E D V W  +L A   
Sbjct: 315 NK-MKDEYGIEPK--IEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRL 371

Query: 365 AGLIDEAKSLFEAMRERNL 383
            G I   + + E + ++NL
Sbjct: 372 HGKIALGEKIVELLVDQNL 390



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 35/141 (24%)

Query: 18  SQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP 77
           S L  C     + S   R VH+++ ++G +   H+   L+D+Y K   L  AR +FD+I 
Sbjct: 195 SVLSACGQLGALES--GRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKID 252

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
             D+VA                                 +N+MI  Y+ +     A++LF
Sbjct: 253 DKDVVA---------------------------------WNSMIVGYAMHGFSQEALQLF 279

Query: 138 RDMRRDDVKPDNFTFTSVLSA 158
           + M R  + P N TF  +LSA
Sbjct: 280 KSMCRMGLHPTNITFIGILSA 300


>gi|242090555|ref|XP_002441110.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
 gi|241946395|gb|EES19540.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
          Length = 516

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/491 (41%), Positives = 311/491 (63%), Gaps = 5/491 (1%)

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           G+Q+HA+ +   A P     + V ++L+ +Y KCG   +AR +F+ +  ++ V W A++S
Sbjct: 30  GRQLHAHFV---ASPYSADDV-VKSSLIDMYCKCGVPEDARKVFDSIGVKNGVVWTALVS 85

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD-Y 419
            Y S G   EA  LF +M ER L +WT +ISG  + G     + LF +MR +G +  D +
Sbjct: 86  GYASNGCTGEAIDLFRSMPERGLFAWTALISGFVKAGNNTGAVGLFVEMRRDGVRIDDAF 145

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
             A  +   A L AL  GRQLH   +  G+ SS+  GNAL+ MY++C  + +A  VF  +
Sbjct: 146 VLATVVGGAAELAALVLGRQLHGFAITLGFLSSMIVGNALVDMYSKCSDIHSAREVFGGI 205

Query: 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
              D VSW  ++    QHG     + LY++ML  G+ P+ +TF+ ++ AC+HAGLV++GR
Sbjct: 206 IVRDVVSWTTILVGEAQHGRVEEVLALYDRMLLAGMKPNEVTFVGLIYACSHAGLVQKGR 265

Query: 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI 599
           + F++M   YGI PG  HY  ++DLL R+G  SEA+++I ++P++P    W ALL+ C+ 
Sbjct: 266 QLFDSMKREYGIKPGLQHYTCYLDLLSRSGYLSEAEELITTMPYEPDEASWGALLSACKK 325

Query: 600 HGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCS 659
           H +  + ++ A+ L +L P    TY+LLSN+YA   +WD  A+VRK+M +  ++KEPG S
Sbjct: 326 HNDTQMCLRVADNLLELRPKDPSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKEPGYS 385

Query: 660 WIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYAL 719
           WIE   +  +F   +      + + ++LE+LV EMRK GYVPDT  V+HD+E ++KE  L
Sbjct: 386 WIEAGRESRMFHAGEVPLDIGEEITRFLEELVSEMRKRGYVPDTSSVMHDLEENEKEQHL 445

Query: 720 STHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHF 779
             HSE+LAVAFG++K P G+ +RV+KNLR+CGDCH   KF+S++  R+I+VRD  RFHHF
Sbjct: 446 FLHSERLAVAFGILKSPPGSVIRVVKNLRVCGDCHTVMKFISEIAQRKIIVRDASRFHHF 505

Query: 780 RDGKCSCGDYW 790
            DG CSC ++W
Sbjct: 506 EDGNCSCSEFW 516



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 100/357 (28%), Positives = 156/357 (43%), Gaps = 62/357 (17%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           Q+H   V S       V ++LI +Y KC          +   AR+VFD +  ++ + WT 
Sbjct: 32  QLHAHFVASPYSADDVVKSSLIDMYCKC---------GVPEDARKVFDSIGVKNGVVWTA 82

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR-----------ELKMLMLRIQ 279
           +++GY  N     A +    M E    AW ALISG+V             E++   +RI 
Sbjct: 83  LVSGYASNGCTGEAIDLFRSMPERGLFAWTALISGFVKAGNNTGAVGLFVEMRRDGVRID 142

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF--SLPVNNALVTLYWKCGKV 337
            D F   +V+   A      LG+Q+H + +      T  F  S+ V NALV +Y KC  +
Sbjct: 143 -DAFVLATVVGGAAELAALVLGRQLHGFAI------TLGFLSSMIVGNALVDMYSKCSDI 195

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNG 397
           + AR++F  +  RD+VSW  IL                                G AQ+G
Sbjct: 196 HSAREVFGGIIVRDVVSWTTIL-------------------------------VGEAQHG 224

Query: 398 YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAG 456
             EE L L+ +M L G KP +  F G I +C+  G ++ GRQL   +    G    L   
Sbjct: 225 RVEEVLALYDRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGIKPGLQHY 284

Query: 457 NALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
              + + +R G +  A  +  TMP   D  SW A+++A  +H +    + + + +L+
Sbjct: 285 TCYLDLLSRSGYLSEAEELITTMPYEPDEASWGALLSACKKHNDTQMCLRVADNLLE 341



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 156/334 (46%), Gaps = 47/334 (14%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R +HAH ++S +   + + + LID+YCK      AR +FD I   + V  T L++ Y++
Sbjct: 30  GRQLHAHFVASPYSADDVVKSSLIDMYCKCGVPEDARKVFDSIGVKNGVVWTALVSGYAS 89

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN-FTF 152
           +     A ++F   P   R    + A+I+ +    N   A+ LF +MRRD V+ D+ F  
Sbjct: 90  NGCTGEAIDLFRSMP--ERGLFAWTALISGFVKAGNNTGAVGLFVEMRRDGVRIDDAFVL 147

Query: 153 TSVLSA---LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
            +V+     LA +V       Q+H   +  G      V NAL+ +Y KC         S 
Sbjct: 148 ATVVGGAAELAALVLGR----QLHGFAITLGFLSSMIVGNALVDMYSKC---------SD 194

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           + +AR VF  +  RD +SWTT++ G  ++  ++      D                    
Sbjct: 195 IHSAREVFGGIIVRDVVSWTTILVGEAQHGRVEEVLALYD-------------------- 234

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALV 328
             +ML+  ++ +E T+  +I AC+++GL + G+Q+   + R    KP     L      +
Sbjct: 235 --RMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGIKP----GLQHYTCYL 288

Query: 329 TLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
            L  + G ++EA ++   MP E D  SW A+LSA
Sbjct: 289 DLLSRSGYLSEAEELITTMPYEPDEASWGALLSA 322


>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
          Length = 617

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 247/679 (36%), Positives = 366/679 (53%), Gaps = 65/679 (9%)

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ 171
           R+ V +  +++  S N     A+  F  MRR  V P  F  +S   A A +        Q
Sbjct: 4   RNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPG-AQ 62

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +HC  V+ G      V + L  +Y KC          L+  A RVFD+MP++D ++WT M
Sbjct: 63  LHCVGVRLGFDTELFVASNLADMYSKC---------GLLSEACRVFDQMPQKDAVAWTAM 113

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           + GY KN  L+A                 A++S    R++K   L +  D+  + SV+SA
Sbjct: 114 IDGYAKNGSLEA-----------------AVLS---FRDMKREGL-VGADQHVFCSVLSA 152

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
                   L K +H  +     K   E  + V NAL+ +Y K   V  A  +    P   
Sbjct: 153 SGGLKDGWLSKSIHCCV----TKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPG-- 206

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
              WN +                          S T MI G  +    EE L ++ ++R 
Sbjct: 207 --GWNVV--------------------------SGTSMIDGYIETDCVEEALVIYVELRR 238

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
           +G +P ++ F+  I  CA    LE G QLHAQ++ +        G+ L+ MY +CG++  
Sbjct: 239 QGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISL 298

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
           +  +FN +     ++WNA+I    QHG+G  AI+ +++M+  GI P+ I F+++L+AC+H
Sbjct: 299 SMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSH 358

Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
           AGLV EG +YF +M   +GI P E+HY+  ID   RAG+  EA   I  +P KP+A  W 
Sbjct: 359 AGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWC 418

Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
           +LL  CR+ G+ +LG  AA+ L +L P + G +V LS +YA+LG+W+D   VRKLMRD  
Sbjct: 419 SLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSR 478

Query: 652 VKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDME 711
           +KK PG SW++ + K HVF  +D +HP+ + +Y+ LE+L   +++ GY+PDT F+  ++E
Sbjct: 479 IKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLE 538

Query: 712 SDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVR 771
              KE  L  HSE++AVAF L+ +P    + V KNLRIC DCH AFKF+ KV  R+I+VR
Sbjct: 539 DIAKERILRYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVR 598

Query: 772 DGKRFHHFRDGKCSCGDYW 790
           D  RFHHF +G+CSCGDYW
Sbjct: 599 DNSRFHHFVNGRCSCGDYW 617



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 110/444 (24%), Positives = 203/444 (45%), Gaps = 80/444 (18%)

Query: 59  IYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYN 118
           ++C  ++L +   LF      D+ ++  L++          A  +F++ P K  D V + 
Sbjct: 63  LHCVGVRLGFDTELFVASNLADMYSKCGLLSE---------ACRVFDQMPQK--DAVAWT 111

Query: 119 AMITAYSHNSNGHAAIELFRDMRRDD-VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVV 177
           AMI  Y+ N +  AA+  FRDM+R+  V  D   F SVLSA   + ++      +HC V 
Sbjct: 112 AMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGL-KDGWLSKSIHCCVT 170

Query: 178 KSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK 237
           K+G  L  +V NALI +Y K        S  +  A+R +  +    + +S T+M+ GY++
Sbjct: 171 KAGFELEVAVRNALIDMYAK--------SMDVESASRVLKIDPGGWNVVSGTSMIDGYIE 222

Query: 238 NDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGL 297
            D ++                  AL+   ++ EL+     ++ +EFT++S+I  CA   L
Sbjct: 223 TDCVE-----------------EALV---IYVELR--RQGVEPNEFTFSSMIKGCAMQAL 260

Query: 298 FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA 357
              G Q+HA +++T+          V + LV +Y KCG ++ +  +FN++  R  ++WNA
Sbjct: 261 LEQGAQLHAQVIKTDLIRDS----FVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNA 316

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
           +++ +                               AQ+G+G E ++ F +M   G +P 
Sbjct: 317 VINVF-------------------------------AQHGHGREAIQAFDRMIYSGIRPN 345

Query: 418 DYAFAGAITSCAGLGALENG-RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
             AF   +T+C+  G ++ G +  ++     G +      + +I  Y R G ++ A    
Sbjct: 346 HIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFI 405

Query: 477 NTMP-NVDSVSWNAMIAALGQHGN 499
           + MP   ++  W +++ A    G+
Sbjct: 406 SEMPIKPNAYGWCSLLGACRMRGS 429



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 93/162 (57%), Gaps = 4/162 (2%)

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
           M  RN +SWT ++SGL+QN    + L  F+ MR  G  P  +A + A  + A LGA   G
Sbjct: 1   MPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPG 60

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
            QLH   V  G+D+ L   + L  MY++CG++  A  VF+ MP  D+V+W AMI    ++
Sbjct: 61  AQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKN 120

Query: 498 GNGARAIELYEQMLKEGIL-PDRITFLTVLSACNHAGLVKEG 538
           G+   A+  +  M +EG++  D+  F +VLSA   +G +K+G
Sbjct: 121 GSLEAAVLSFRDMKREGLVGADQHVFCSVLSA---SGGLKDG 159



 Score = 47.4 bits (111), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 27/128 (21%), Positives = 62/128 (48%), Gaps = 6/128 (4%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIV----ARTTLIAAYS 92
           ++  +   G +P E   + +I        L     L  ++ + D++      +TL+  Y 
Sbjct: 232 IYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYG 291

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
               + L+ ++FN+  ++ R  + +NA+I  ++ + +G  AI+ F  M    ++P++  F
Sbjct: 292 KCGLISLSMQLFNE--IEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAF 349

Query: 153 TSVLSALA 160
            S+L+A +
Sbjct: 350 VSLLTACS 357


>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
 gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
          Length = 673

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 257/756 (33%), Positives = 391/756 (51%), Gaps = 93/756 (12%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           VHAH+I +G      +++ L+++Y K   +V AR +FD +P+                  
Sbjct: 2   VHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPR------------------ 43

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
                          R+ V +  ++T Y  NS    A+E+F DM      P NFT +  L
Sbjct: 44  ---------------RNVVVWTTLMTGYVQNSQPEVAVEVFGDMLESGSFPSNFTLSIAL 88

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
           +A + + E      Q H  ++K      +S+ NAL S+Y K  S         + ++ + 
Sbjct: 89  NACSSL-ESITLGKQFHAFIIKYRISHDSSIGNALCSLYSKFGS---------LDSSVKA 138

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLML 276
           F E  E+D +SWTT+++                G +   G+     I        +ML  
Sbjct: 139 FRETGEKDVISWTTIISAC--------------GDNGRAGMGLRLFI--------EMLFE 176

Query: 277 RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
            ++ ++FT TSV+S C+      LG QVH+       K   E +L + N+LV LY KCG 
Sbjct: 177 NVEPNDFTLTSVLSLCSTIQSSDLGMQVHSL----STKLGHESNLRITNSLVYLYLKCGC 232

Query: 337 VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
           ++EA+++FN+M  ++L++WNA+++ +  A  +D AK  F A +                 
Sbjct: 233 IDEAKNLFNRMEYKNLITWNAMIAGHAQA--MDLAKDNFSAQQT---------------- 274

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
             G E L ++ ++   G KP  +  +  +T C+ L ALE G Q+HAQ + SG+ S +  G
Sbjct: 275 --GTEALGMYLKLNRSGRKPDLFTLSSILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVG 332

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
            AL+ MY +CG +E A   F  M     +SW +MI +  +HG    A++L+E M   G  
Sbjct: 333 TALVDMYDKCGSIERARKAFLDMSTRTLISWTSMITSFARHGQSQHALQLFEDMRLAGFR 392

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
           P++ITF+ VL+AC+HAG+V E   YFE M   Y I P  DHY   +D+  R G+  EA D
Sbjct: 393 PNQITFVGVLAACSHAGMVDEALEYFEIMQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFD 452

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636
           VI  +  +P+  IW  L+AGCR HGN +LG  AAEQL +L P    TYV+L NMY +  R
Sbjct: 453 VIKRMDVEPNEFIWLLLIAGCRNHGNEELGFYAAEQLLKLKPRSTETYVVLLNMYISAER 512

Query: 637 WDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRK 696
           W+D + VR+LM++  V K    S I +  +VH F  ++  H     ++  L  LV   + 
Sbjct: 513 WEDVSMVRRLMKEEKVGKLKDWSRISIKGEVHSFKTNNRLHNHNAELHTLLNDLVDRAKS 572

Query: 697 LGYVP-DTKFVLHDMESDQKEYALST---HSEKLAVAFGLMKLPGGATVRVLKNLRICGD 752
           LGY   +   V+ D E + +E A S+   HSEKLAV FGL+  P GA +RV+K++ +C D
Sbjct: 573 LGYEQLENMEVIDDEEEEAEEKAFSSAVYHSEKLAVTFGLLNTPIGAPIRVIKSVTMCKD 632

Query: 753 CHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788
           CH+  K +S    R I+++DGKR H F +G+CSC D
Sbjct: 633 CHDFMKVVSSQTTRHIIIKDGKRLHKFVNGQCSCAD 668



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 145/331 (43%), Gaps = 59/331 (17%)

Query: 17  ASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEI 76
            S L LC      +S L   VH+     G +    I N L+ +Y K   +  A+ LF+ +
Sbjct: 186 TSVLSLCSTIQ--SSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNLFNRM 243

Query: 77  PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
              +++    +IA ++ +  + LA++ F                    S    G  A+ +
Sbjct: 244 EYKNLITWNAMIAGHAQA--MDLAKDNF--------------------SAQQTGTEALGM 281

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           +  + R   KPD FT +S+L+  + +   E Q  Q+H   +KSG      V  AL+ +Y 
Sbjct: 282 YLKLNRSGRKPDLFTLSSILTVCSRLAALE-QGEQIHAQTIKSGFLSDVVVGTALVDMYD 340

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           KC S         +  AR+ F +M  R  +SWT+M+T + ++     A +  + M     
Sbjct: 341 KCGS---------IERARKAFLDMSTRTLISWTSMITSFARHGQSQHALQLFEDMR---- 387

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
                 ++G+            + ++ T+  V++AC+++G+     + +  +++ E K  
Sbjct: 388 ------LAGF------------RPNQITFVGVLAACSHAGMVDEALE-YFEIMQKEYKIK 428

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           P   +     LV ++ + G+++EA D+  +M
Sbjct: 429 P--VMDHYGCLVDMFVRLGRLDEAFDVIKRM 457


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 245/770 (31%), Positives = 392/770 (50%), Gaps = 80/770 (10%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           R++H H    G     +  N L+ +Y KS  L +A  LFDEI   +    T LI+ ++ +
Sbjct: 52  RALHGHYFKKGSLQILNSANYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFARA 111

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
                                             +      LFR+M+ D   P+ +T +S
Sbjct: 112 AG--------------------------------SSELVFSLFREMQADGACPNQYTLSS 139

Query: 155 VLSALALIVEEEKQCMQ-MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           VL   +   E   Q  + +H  ++++G G    + N+++ +Y+KC    +         A
Sbjct: 140 VLKCCSR--ENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEY---------A 188

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
              F+ M E+D +SW  M+  Y++   ++ + E          V+WN +I G +    + 
Sbjct: 189 ESFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYER 248

Query: 274 LMLR---------IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP-- 322
           L L           +    T++  +   ++  L  +G+Q+H  +L         F L   
Sbjct: 249 LALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGRQLHGRVL--------TFGLNSD 300

Query: 323 --VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
             + ++LV +Y KCG++++A  I   +P   L   N  ++         E K+       
Sbjct: 301 GYIRSSLVEMYGKCGRMDKASTILKDVPLNFLRKGNFGVTC-------KEPKA------- 346

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
             ++SW+ M+SG   NG  E+G+K F  M  E         A  I++CA  G LE G+Q+
Sbjct: 347 -RMVSWSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVATIISACANAGILEFGKQI 405

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           HA +   G       G++LI MY++ G ++ A  +F  +   + V W +MI+    HG G
Sbjct: 406 HAYIQKIGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIKEPNVVLWTSMISGCALHGQG 465

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
             AI L+E ML  GI+P+ +TF+ VL+AC+H GL++EG RYF  M   Y I P  +HY  
Sbjct: 466 KEAISLFEGMLNLGIIPNEVTFVGVLNACSHVGLIEEGCRYFRMMKDTYHINPEVEHYTS 525

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
            ++L  RAG   EAK+ I          +W + L+ CR+H N ++G   +E L Q  P  
Sbjct: 526 MVNLYGRAGHLIEAKNFIFENSISHFTSVWRSFLSSCRLHKNFNMGKSVSEMLLQSAPSD 585

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEA 680
              Y+LLSNM ++  +WD+AA VR LM  RGVKK+PG SW+++ +++H F V D +HP+ 
Sbjct: 586 PDAYILLSNMCSSNHQWDEAAIVRSLMYQRGVKKQPGQSWVQLKDQIHSFTVGDRSHPQD 645

Query: 681 QAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT 740
           + +Y YL+ L+  ++++GY  D K V+ D+E +Q E  +S HSEKLA+ F ++       
Sbjct: 646 KEIYSYLDSLIGRLKEIGYSLDAKLVMQDVEEEQGEVLISHHSEKLALVFSIINTSPRTP 705

Query: 741 VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +R++KNLRIC DCHN FK+ S+++ REI+VRD  RFHHF+   CSCG+YW
Sbjct: 706 IRIMKNLRICNDCHNFFKYASQLLEREIIVRDTHRFHHFKQSSCSCGEYW 755



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 134/539 (24%), Positives = 239/539 (44%), Gaps = 92/539 (17%)

Query: 14  NRY--ASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYART 71
           N+Y  +S L+ C   N I     + +HA ++ +G      + N ++D+Y K  +  YA +
Sbjct: 133 NQYTLSSVLKCCSRENNI--QFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYAES 190

Query: 72  LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
            F+ + + D+V+   +I AY    +V+ + EMF   P K  D V +N +I          
Sbjct: 191 FFELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNK--DVVSWNTIIDGLIQCGYER 248

Query: 132 AAIELFRDM--RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLN 189
            A+E    M     +  P  F+   +L +   +VE  +   Q+H  V+  G      + +
Sbjct: 249 LALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGR---QLHGRVLTFGLNSDGYIRS 305

Query: 190 ALISVYVKC----VSSPFVSSRSLMGAARRVFD---EMPERDELSWTTMMTGYVKN-DYL 241
           +L+ +Y KC     +S  +    L    +  F    + P+   +SW++M++GYV N  Y 
Sbjct: 306 SLVEMYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPKARMVSWSSMVSGYVWNGKYE 365

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
           D  + F   + E                        I +D  T  ++ISACAN+G+   G
Sbjct: 366 DGMKTFRSMVCE-----------------------LIVVDIRTVATIISACANAGILEFG 402

Query: 302 KQVHAYL----LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA 357
           KQ+HAY+    LR +A         V ++L+ +Y K G +++A  IF Q+ E ++V W +
Sbjct: 403 KQIHAYIQKIGLRIDAY--------VGSSLIDMYSKSGSLDDALMIFEQIKEPNVVLWTS 454

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
           ++S     G   EA SLFE M                        L L       G  P 
Sbjct: 455 MISGCALHGQGKEAISLFEGM------------------------LNL-------GIIPN 483

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGY--DSSLSAGNALITMYARCG-VVEAANC 474
           +  F G + +C+ +G +E G + + +++   Y  +  +    +++ +Y R G ++EA N 
Sbjct: 484 EVTFVGVLNACSHVGLIEEGCR-YFRMMKDTYHINPEVEHYTSMVNLYGRAGHLIEAKNF 542

Query: 475 VF-NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL-PDRITFLTVLSACNH 531
           +F N++ +  SV W + +++   H N      + E +L+     PD    L+ + + NH
Sbjct: 543 IFENSISHFTSV-WRSFLSSCRLHKNFNMGKSVSEMLLQSAPSDPDAYILLSNMCSSNH 600



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 62/126 (49%), Gaps = 6/126 (4%)

Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
           +PC +     + S   +G+  + R LH      G    L++ N L+T+Y +   ++ A+ 
Sbjct: 34  QPCSF-----LHSTTSIGSPPSLRALHGHYFKKGSLQILNSANYLLTLYVKSSNLDHAHK 88

Query: 475 VFNTMPNVDSVSWNAMIAALGQ-HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533
           +F+ + + ++ +W  +I+   +  G+      L+ +M  +G  P++ T  +VL  C+   
Sbjct: 89  LFDEITHKNTQTWTILISGFARAAGSSELVFSLFREMQADGACPNQYTLSSVLKCCSREN 148

Query: 534 LVKEGR 539
            ++ G+
Sbjct: 149 NIQFGK 154


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 256/726 (35%), Positives = 381/726 (52%), Gaps = 68/726 (9%)

Query: 65  KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
           +L++AR +              LI  YS   ++  A  +F   P   R+ V +  +++  
Sbjct: 190 RLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMP--RRNAVSWTTLVSGL 247

Query: 125 SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLF 184
           S N     A+  F  MRR  V P  F  +S   A A +    +         V   T LF
Sbjct: 248 SQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLRARSCTASASVGFDTELF 307

Query: 185 TSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAA 244
             V + L  +Y KC          L+  A RVFD+MP++D ++WT M+ GY KN  L+A 
Sbjct: 308 --VASNLADMYSKC---------GLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEA- 355

Query: 245 REFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304
                           A++S    R++K   L +  D+  + SV+SA        L K +
Sbjct: 356 ----------------AVLS---FRDMKREGL-VGADQHVFCSVLSASGGLKDGWLSKSI 395

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVS 364
           H  +     K   E  + V NAL+ +Y K   V  A  +    P      WN +      
Sbjct: 396 HCCV----TKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPG----GWNVV------ 441

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
                               S T MI G  +    EE L ++ ++R +G +P ++ F+  
Sbjct: 442 --------------------SGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSM 481

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           I  CA    LE G QLHAQ++ +        G+ L+ MY +CG++  +  +FN +     
Sbjct: 482 IKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTD 541

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
           ++WNA+I    QHG+G  AI+ +++M+  GI P+ I F+++L+AC+HAGLV EG +YF +
Sbjct: 542 IAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYS 601

Query: 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
           M   +GI P E+HY+  ID   RAG+  EA   I  +P KP+A  W +LL  CR+ G+ +
Sbjct: 602 MKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKE 661

Query: 605 LGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVD 664
           LG  AA+ L +L P + G +V LS +YA+LG+W+D   VRKLMRD  +KK PG SW++ +
Sbjct: 662 LGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSN 721

Query: 665 NKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSE 724
            K HVF  +D +HP+ + +Y+ LE+L   +++ GY+PDT F+  ++E   KE  L  HSE
Sbjct: 722 KKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSE 781

Query: 725 KLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKC 784
           ++AVAF L+ +P    + V KNLRIC DCH AFKF+ KV  R+I+VRD  RFHHF +G+C
Sbjct: 782 RIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRC 841

Query: 785 SCGDYW 790
           SCGDYW
Sbjct: 842 SCGDYW 847



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 111/378 (29%), Positives = 173/378 (45%), Gaps = 41/378 (10%)

Query: 172 MHCTVVKSGTGLFTSVL-NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           +H  +V SG    ++ L N LI++Y  C           + +A R+F  MP R+ +SWTT
Sbjct: 42  LHARLVLSGAAAASTFLANHLITMYSHCAD---------LASALRLFAAMPRRNAVSWTT 92

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALI-SGYVHRELKMLMLRIQLDEFTYTSVI 289
           +++G  +N  + A            GVA   LI     H  L             +T   
Sbjct: 93  LVSGLSQN-LMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGP----------KHTLAA 141

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE--------AR 341
           S C +SG   + K     L R    P P  +  V+  L +L   CG+  +        AR
Sbjct: 142 SHC-HSGPTLMVKYWGQRLWR---PPAPAAATTVH--LASLLQSCGRAGDLRRGRLLHAR 195

Query: 342 DIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEE 401
            + +          N +++ Y     +  A  LF AM  RN +SWT ++SGL+QN    +
Sbjct: 196 LVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHAD 255

Query: 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALIT 461
            L  F+ MR  G  P  +A + A  + A LGA    R   A     G+D+ L   + L  
Sbjct: 256 ALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLRARSCTAS-ASVGFDTELFVASNLAD 314

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL-PDRI 520
           MY++CG++  A  VF+ MP  D+V+W AMI    ++G+   A+  +  M +EG++  D+ 
Sbjct: 315 MYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQH 374

Query: 521 TFLTVLSACNHAGLVKEG 538
            F +VLSA   +G +K+G
Sbjct: 375 VFCSVLSA---SGGLKDG 389



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 142/370 (38%), Gaps = 86/370 (23%)

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
           S++ +C  +G  R G+ +HA L+ + A     F   + N L+T+Y  C            
Sbjct: 25  SLLQSCGRAGDLRRGRLLHARLVLSGAAAASTF---LANHLITMYSHCA----------- 70

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
               DL S                A  LF AM  RN +SWT ++SGL+QN    + L  F
Sbjct: 71  ----DLAS----------------ALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAF 110

Query: 407 SQMRLEGFKPCDYAF--------------------------------------------- 421
           + MR  G  P    +                                             
Sbjct: 111 AAMRRAGVAPTRLIYETKFHNTLGPKHTLAASHCHSGPTLMVKYWGQRLWRPPAPAAATT 170

Query: 422 ---AGAITSCAGLGALENGRQLHAQLVHSG-YDSSLSAGNALITMYARCGVVEAANCVFN 477
              A  + SC   G L  GR LHA+LV SG   +S    N LITMY+ C  + +A  +F 
Sbjct: 171 VHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFA 230

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKE 537
            MP  ++VSW  +++ L Q+   A A+  +  M + G+ P R    +   A    G    
Sbjct: 231 AMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLR 290

Query: 538 GRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
            R    T     G        +   D+  + G  SEA  V D +P K  A  W A++ G 
Sbjct: 291 ARSC--TASASVGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQK-DAVAWTAMIDGY 347

Query: 598 RIHGNIDLGI 607
             +G+++  +
Sbjct: 348 AKNGSLEAAV 357



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 1/105 (0%)

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSG-YDSSLSAGNALITMYARCGVVEAANCVFNTM 479
            A  + SC   G L  GR LHA+LV SG   +S    N LITMY+ C  + +A  +F  M
Sbjct: 23  LASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAM 82

Query: 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           P  ++VSW  +++ L Q+   A A+  +  M + G+ P R+ + T
Sbjct: 83  PRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYET 127



 Score = 47.4 bits (111), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 61/126 (48%), Gaps = 6/126 (4%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIV----ARTTLIAAYS 92
           ++  +   G +P E   + +I        L     L  ++ + D++      +TL+  Y 
Sbjct: 462 IYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYG 521

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
               + L+ ++FN+  ++ R  + +NA+I  ++ + +G  AI+ F  M    ++P++  F
Sbjct: 522 KCGLISLSMQLFNE--IEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAF 579

Query: 153 TSVLSA 158
            S+L+A
Sbjct: 580 VSLLTA 585


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/625 (37%), Positives = 348/625 (55%), Gaps = 64/625 (10%)

Query: 167 KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDEL 226
           ++  Q+    +K+      SVL   I+    C  +P  +S   M  A  +FD++P+ D +
Sbjct: 34  RELKQLQAFAIKTHLHSDLSVLTKFINF---CSLNPTTTS---MQHAHHLFDQIPQPDIV 87

Query: 227 SWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYT 286
            + TM  GY + D     R F         +    L SG               D++T+ 
Sbjct: 88  LFNTMARGYARTD--TPLRAFT--------LFTQILFSGLFP------------DDYTFP 125

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
           S++ ACA+      G+Q+H   ++         ++ V   L+ +Y  C          N+
Sbjct: 126 SLLKACASCKALEEGRQLHCLAIKLGLSE----NVYVCPTLINMYTAC----------NE 171

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
           M                     D A+ +F+ + E  ++++  MI+G A+     E L LF
Sbjct: 172 M---------------------DCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLF 210

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
            +++    KP D      ++SCA LGAL+ G+ +H  +  +G++  +    ALI MYA+C
Sbjct: 211 RELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKC 270

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G ++ A CVF  M   D+ +W+AMI A   HG+G +A+ L+++M K G  PD ITFL +L
Sbjct: 271 GSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLL 330

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
            AC+H GLV+EG  YF  M   YG+ PG  HY   +DLL RAG+  EA + I  LP +P+
Sbjct: 331 YACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPT 390

Query: 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKL 646
             +W  LL+ C  HGN++LG +  EQ+F+L   H G Y++LSN+ A  GRW+D   VRKL
Sbjct: 391 PILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNLCARAGRWEDVNYVRKL 450

Query: 647 MRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFV 706
           M +RGV K PGCS +EV+N VH F   D  H  +  +++ L++LV E++ +GYVP+T  V
Sbjct: 451 MNERGVVKIPGCSSVEVNNVVHEFFSGDGVHSVSTKLHQALDELVKELKLVGYVPNTSLV 510

Query: 707 LH-DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVG 765
            H DME ++KE  L  HSEKLA+ FGL+  P G T+RV+KNLR+CGDCH+A K +S +  
Sbjct: 511 FHADMEDEEKEVTLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISLIFD 570

Query: 766 REIVVRDGKRFHHFRDGKCSCGDYW 790
           R+I++RD +RFHHF+DGKCSC DYW
Sbjct: 571 RQIILRDVQRFHHFKDGKCSCEDYW 595



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 113/443 (25%), Positives = 179/443 (40%), Gaps = 105/443 (23%)

Query: 68  YARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHN 127
           +A  LFD+IPQPDIV                                  +N M   Y+  
Sbjct: 73  HAHHLFDQIPQPDIV---------------------------------LFNTMARGYART 99

Query: 128 SNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSV 187
                A  LF  +    + PD++TF S+L A A     E+   Q+HC  +K G      V
Sbjct: 100 DTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEG-RQLHCLAIKLGLSENVYV 158

Query: 188 LNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREF 247
              LI++Y  C         + M  ARRVFD++ E   +++  M+TGY +    + A   
Sbjct: 159 CPTLINMYTAC---------NEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSL 209

Query: 248 LDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY 307
                                REL+   L+    + T  SV+S+CA  G   LGK +H Y
Sbjct: 210 F--------------------RELQARNLKPT--DVTMLSVLSSCALLGALDLGKWMHEY 247

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367
           + +        F + V+ AL+ +Y KCG +++A  +F  M  RD  +W+A++ AY     
Sbjct: 248 VKKNGFN---RF-VKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAY----- 298

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
                                     A +G+G + + LF +MR  G +P +  F G + +
Sbjct: 299 --------------------------AIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYA 332

Query: 428 CAGLGALENGRQ-LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSV 485
           C+  G +E G +  +      G    +     ++ +  R G +E A      +P     +
Sbjct: 333 CSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPI 392

Query: 486 SWNAMIAALGQHGN---GARAIE 505
            W  +++A G HGN   G R IE
Sbjct: 393 LWRTLLSACGSHGNVELGKRVIE 415



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 144/326 (44%), Gaps = 26/326 (7%)

Query: 313 AKPTPEFSLPVNNALVT----LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV----- 363
           A P      P +N+  T    L  KC  + E + +     +  L S  ++L+ ++     
Sbjct: 5   APPVTPMCPPNSNSNTTHPLSLLPKCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCSL 64

Query: 364 --SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
             +   +  A  LF+ + + +++ +  M  G A+         LF+Q+   G  P DY F
Sbjct: 65  NPTTTSMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTF 124

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
              + +CA   ALE GRQLH   +  G   ++     LI MY  C  ++ A  VF+ +  
Sbjct: 125 PSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWE 184

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY 541
              V++NAMI    +      A+ L+ ++    + P  +T L+VLS+C   G +  G+  
Sbjct: 185 PCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWM 244

Query: 542 FETMHGPYGIPPGEDHYAR----FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
            E     Y    G + + +     ID+  + G   +A  V +++  + +   W A++   
Sbjct: 245 HE-----YVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQA-WSAMIMAY 298

Query: 598 RIHGNIDLGIQAAEQLFQLMPHHAGT 623
            IHG+   G++A   LF+ M   AGT
Sbjct: 299 AIHGH---GLKAV-SLFKEM-RKAGT 319


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 262/777 (33%), Positives = 400/777 (51%), Gaps = 101/777 (12%)

Query: 15  RYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHII-NRLIDIYCKSLKLVYARTLF 73
           R A+ LQ C     +   L R +HA ++ SG       + N LI +Y     +  A  LF
Sbjct: 19  RLAAPLQSCGRAGDL--RLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLF 76

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
           D +P+P++V+ TTL+                                 +  + NS    A
Sbjct: 77  DAMPRPNLVSWTTLV---------------------------------SGLTQNSMHRDA 103

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
           +  F  M R  + P  F  +S   A A +        Q+HC  V+ G      V + L  
Sbjct: 104 LAAFSSMCRAGLVPTQFALSSAARAAAALAARHAG-AQLHCVGVRLGFDAELFVASNLAD 162

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
           +Y         S   L+  A RVFD+MP++D ++WT M+ GY KN  L+A          
Sbjct: 163 MY---------SKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEA---------- 203

Query: 254 NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
                  A+I+    R+++   L +  D+    SV+SA        L + +H+ ++    
Sbjct: 204 -------AVIA---FRDMRREGL-VGADQHVLCSVLSASGGLKDGWLARAIHSCVM---- 248

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
           K   E  + V NAL  +Y K   ++ A  +                        ID+   
Sbjct: 249 KSGFEQEVAVRNALTDMYAKAADMDNAARVVK----------------------IDQG-- 284

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
                   N++S T +I G  +    E+ L +F ++R +G +P ++ F+  I  CA    
Sbjct: 285 ------SLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQAL 338

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
           LE G QLHA+++ +   S     + L+ MY +CG++  +  +F  +     ++WNA I  
Sbjct: 339 LEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAWNAAINV 398

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
           L QHG+G  AI  +++M   GI P+ ITF+++L+AC+HAGLV EG +YF +M   +GI P
Sbjct: 399 LAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFYSMKDHHGIEP 458

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
             +HY+  ID+  RAG+  EA+  I  +P KP+A  W +LL  CR+ GN +LG  AA+ +
Sbjct: 459 KGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNKELGEIAADNM 518

Query: 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVD 673
            +L P + G +V LS +YA+LG+W+D   VRKLMRD  +KK PG SW++ + K HVF  +
Sbjct: 519 MKLEPDNTGVHVSLSGIYASLGQWEDVKAVRKLMRDNRIKKLPGFSWVDSNKKTHVFGSE 578

Query: 674 DTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLM 733
           D +HP+ + +Y+ LE+L   +++ GYVPDT+F+  ++E   K+  L  HSE++AVAF L+
Sbjct: 579 DWSHPQQEKIYEKLEELYERIKEEGYVPDTRFLPCNLEDTAKQRILRYHSERIAVAFALI 638

Query: 734 KLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            +P    + V KNLRIC DCH+A KF+SKV  R+I+VRD  RFHHF  G CSCGDYW
Sbjct: 639 SMPATKPIIVKKNLRICADCHSALKFISKVENRDIIVRDNSRFHHFVKGGCSCGDYW 695


>gi|334186267|ref|NP_192012.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635642|sp|Q9SV26.2|PP297_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g01030, mitochondrial; Flags: Precursor
 gi|332656570|gb|AEE81970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  434 bits (1116), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 253/812 (31%), Positives = 412/812 (50%), Gaps = 102/812 (12%)

Query: 33  LARSVHAHMISSGFKPRE-HIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           L  ++H  +I  G    +  +++  +  Y + + L +A  LFDE+P+             
Sbjct: 5   LGLTIHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPK------------- 51

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                               RD + +N ++     + N   A+ELFR+M+    K  + T
Sbjct: 52  --------------------RDDLAWNEIVMVNLRSGNWEKAVELFREMQFSGAKAYDST 91

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
              +L   +   E   +  Q+H  V++ G     S+ N+LI +Y         S    + 
Sbjct: 92  MVKLLQVCS-NKEGFAEGRQIHGYVLRLGLESNVSMCNSLIVMY---------SRNGKLE 141

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD-----GMSENVGVAWNALISGY 266
            +R+VF+ M +R+  SW ++++ Y K  Y+D A   LD     G+  ++ V WN+L+SGY
Sbjct: 142 LSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICGLKPDI-VTWNSLLSGY 200

Query: 267 VHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
             + L         +M +  ++    + +S++ A A  G  +LGK +H Y+LR +     
Sbjct: 201 ASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQL---- 256

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL--- 374
            + + V   L+ +Y K G +  AR +F+ M  +++V+WN+++S    A L+ +A++L   
Sbjct: 257 WYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIR 316

Query: 375 --------------------------------FEAMRER----NLLSWTVMISGLAQNGY 398
                                              M+E+    N++SWT + SG ++NG 
Sbjct: 317 MEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGN 376

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
               LK+F +M+ EG  P     +  +     L  L +G+++H   +            A
Sbjct: 377 FRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVHGFCLRKNLICDAYVATA 436

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           L+ MY + G +++A  +F  + N    SWN M+      G G   I  +  ML+ G+ PD
Sbjct: 437 LVDMYGKSGDLQSAIEIFWGIKNKSLASWNCMLMGYAMFGRGEEGIAAFSVMLEAGMEPD 496

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVI 578
            ITF +VLS C ++GLV+EG +YF+ M   YGI P  +H +  +DLL R+G   EA D I
Sbjct: 497 AITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIEHCSCMVDLLGRSGYLDEAWDFI 556

Query: 579 DSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWD 638
            ++  KP A IW A L+ C+IH +++L   A ++L  L PH++  Y+++ N+Y+NL RW+
Sbjct: 557 QTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSANYMMMINLYSNLNRWE 616

Query: 639 DAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLG 698
           D  R+R LMR+  V+ +   SWI++D  VH+F  +   HP+   +Y  L +LV EM+K G
Sbjct: 617 DVERIRNLMRNNRVRVQDLWSWIQIDQTVHIFYAEGKTHPDEGDIYFELYKLVSEMKKSG 676

Query: 699 YVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFK 758
           YVPDT  +  D+   +KE  L  H+EKLA+ +GL+K  G A +RV+KN  IC D H   K
Sbjct: 677 YVPDTSCIHQDISDSEKEKLLMGHTEKLAMTYGLIKKKGLAPIRVVKNTNICSDSHTVAK 736

Query: 759 FMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +MS +  REIV+++G R HHFRDGKCSC D W
Sbjct: 737 YMSVLRNREIVLQEGARVHHFRDGKCSCNDSW 768


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/520 (40%), Positives = 323/520 (62%), Gaps = 5/520 (0%)

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
           +ML  RI  D  T+  +I A +      +G+Q H+ ++R   +      + V N+LV +Y
Sbjct: 107 QMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQN----DVYVENSLVHMY 162

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
             CG +  A  IF QM  RD+VSW ++++ Y   G+++ A+ +F+ M  RNL +W++MI+
Sbjct: 163 ANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMIN 222

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
           G A+N   E+ + LF  M+ EG    +      I+SCA LGALE G + +  +V S    
Sbjct: 223 GYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTV 282

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
           +L  G AL+ M+ RCG +E A  VF  +P  DS+SW+++I  L  HG+  +A+  + QM+
Sbjct: 283 NLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMI 342

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571
             G +P  +TF  VLSAC+H GLV++G   +E M   +GI P  +HY   +D+L RAGK 
Sbjct: 343 SLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKL 402

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631
           +EA++ I  +  KP+API  ALL  C+I+ N ++  +    L ++ P H+G YVLLSN+Y
Sbjct: 403 AEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIY 462

Query: 632 ANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLV-DDTAHPEAQAVYKYLEQL 690
           A  G+WD    +R +M+++ VKK PG S IE+D K++ F + DD  HPE   + +  E++
Sbjct: 463 ACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEI 522

Query: 691 VLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRIC 750
           + ++R +GY  +T     D++ ++KE ++  HSEKLA+A+G+MK   G T+R++KNLR+C
Sbjct: 523 LGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVC 582

Query: 751 GDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            DCH   K +S+V GRE++VRD  RFHHFR+G CSC DYW
Sbjct: 583 EDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 107/426 (25%), Positives = 188/426 (44%), Gaps = 66/426 (15%)

Query: 117 YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM----QM 172
           +N +I  +S  +    A   +  M +  + PDN TF  ++ A       E +C+    Q 
Sbjct: 85  FNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKA-----SSEMECVLVGEQT 139

Query: 173 HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMM 232
           H  +V+ G      V N+L+ +Y  C           + AA R+F +M  RD +SWT+M+
Sbjct: 140 HSQIVRFGFQNDVYVENSLVHMYANC---------GFIAAAGRIFGQMGFRDVVSWTSMV 190

Query: 233 TGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR-------ELKMLMLR--IQLDEF 283
            GY K   ++ ARE  D M       W+ +I+GY          +L   M R  +  +E 
Sbjct: 191 AGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANET 250

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
              SVIS+CA+ G    G++ + Y++++        +L +  ALV ++W+CG + +A  +
Sbjct: 251 VMVSVISSCAHLGALEFGERAYEYVVKSHMT----VNLILGTALVDMFWRCGDIEKAIHV 306

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
           F  +PE D +SW++I                               I GLA +G+  + +
Sbjct: 307 FEGLPETDSLSWSSI-------------------------------IKGLAVHGHAHKAM 335

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITM 462
             FSQM   GF P D  F   +++C+  G +E G +++  +    G +  L     ++ M
Sbjct: 336 HYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDM 395

Query: 463 YARCG-VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
             R G + EA N +       ++    A++ A   + N   A  +   ++K  + P+   
Sbjct: 396 LGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIK--VKPEHSG 453

Query: 522 FLTVLS 527
           +  +LS
Sbjct: 454 YYVLLS 459



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 123/284 (43%), Gaps = 39/284 (13%)

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
           L+  A  +F  ++  NL  + ++I   +      +    ++QM      P +  F   I 
Sbjct: 66  LLGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIK 125

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
           + + +  +  G Q H+Q+V  G+ + +   N+L+ MYA CG + AA  +F  M   D VS
Sbjct: 126 ASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVS 185

Query: 487 WNAMIAALGQHG------------------------NG-------ARAIELYEQMLKEGI 515
           W +M+A   + G                        NG        +AI+L+E M +EG+
Sbjct: 186 WTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGV 245

Query: 516 LPDRITFLTVLSACNHAGLVKEGRRYFETM---HGPYGIPPGEDHYARFIDLLCRAGKFS 572
           + +    ++V+S+C H G ++ G R +E +   H    +  G       +D+  R G   
Sbjct: 246 VANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILG----TALVDMFWRCGDIE 301

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           +A  V + LP   S   W +++ G  +HG+    +    Q+  L
Sbjct: 302 KAIHVFEGLPETDSLS-WSSIIKGLAVHGHAHKAMHYFSQMISL 344



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 147/315 (46%), Gaps = 37/315 (11%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           +    H+ ++  GF+   ++ N L+ +Y     +  A  +F ++   D+V+ T+++A Y 
Sbjct: 135 VGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYC 194

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
               V+ AREMF++ P   R+   ++ MI  Y+ N+    AI+LF  M+R+ V  +    
Sbjct: 195 KCGMVENAREMFDEMP--HRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVM 252

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            SV+S+ A +   E    + +  VVKS   +   +  AL+ ++ +C           +  
Sbjct: 253 VSVISSCAHLGALEFG-ERAYEYVVKSHMTVNLILGTALVDMFWRCGD---------IEK 302

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A  VF+ +PE D LSW++++ G   + +   A  +   M          +  G++ R++ 
Sbjct: 303 AIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQM----------ISLGFIPRDV- 351

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                      T+T+V+SAC++ GL   G +++  + +       E  L     +V +  
Sbjct: 352 -----------TFTAVLSACSHGGLVEKGLEIYENMKKDHG---IEPRLEHYGCIVDMLG 397

Query: 333 KCGKVNEARDIFNQM 347
           + GK+ EA +   +M
Sbjct: 398 RAGKLAEAENFILKM 412



 Score = 47.4 bits (111), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 121/304 (39%), Gaps = 32/304 (10%)

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
           +F+ + N +   +N +I         ++A   Y QMLK  I PD ITF  ++ A +    
Sbjct: 73  IFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMEC 132

Query: 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
           V  G +    +   +G           + +    G  + A  +   + F+     W +++
Sbjct: 133 VLVGEQTHSQI-VRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVS-WTSMV 190

Query: 595 AG-CRIHGNIDLGIQAAEQLFQLMPH-HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           AG C+        ++ A ++F  MPH +  T+ ++ N YA    ++ A  + + M+  GV
Sbjct: 191 AGYCKCG-----MVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGV 245

Query: 653 KKEPGCSWIEVDNKVHVFLVDDTAHPEA----QAVYKYLEQLVLEMRKLGYVPDTKFVLH 708
                      +  V V ++   AH  A    +  Y+Y   +V     +  +  T  V  
Sbjct: 246 V---------ANETVMVSVISSCAHLGALEFGERAYEY---VVKSHMTVNLILGTALV-- 291

Query: 709 DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREI 768
           DM     +   + H     V  GL +    +   ++K L + G  H A  + S+++    
Sbjct: 292 DMFWRCGDIEKAIH-----VFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGF 346

Query: 769 VVRD 772
           + RD
Sbjct: 347 IPRD 350


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/614 (37%), Positives = 335/614 (54%), Gaps = 47/614 (7%)

Query: 184 FTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDA 243
           F S      + Y  C+ + +  +   +  AR +FD +P  D +S+ T++  +  +   D 
Sbjct: 40  FVSTPRKTTATY-NCLLAGYARAPGRLADARHLFDRIPTPDVVSYNTLLLCHFASGDADG 98

Query: 244 AREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ 303
           AR     M      +WN ++SG                           + SG     K 
Sbjct: 99  ARRLFASMPVRDVASWNTMVSGL--------------------------SKSGAVEEAKV 132

Query: 304 VHAYLLRTEAKPTPEFSLPVNN-----ALVTLYWKCGKVNEARDIFNQMPER-DLVSWNA 357
           V               ++PV N     A+V+ +   G ++ A + F   PE+ D V W A
Sbjct: 133 VF-------------LAMPVRNSVSWNAMVSGFACSGDMSTAEEWFRNAPEKEDAVLWTA 179

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RLEGFKP 416
           ++S Y+  G + +A   FEAM  RNL+SW  +++G  +N + ++ L+LF  M R    +P
Sbjct: 180 MVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQP 239

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
                +  +  C+ L AL  G+Q+H   +      +L+ G +L++MY +CG + +A  +F
Sbjct: 240 NASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILF 299

Query: 477 NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536
             M   D V+WNAMI+   QHG+G  AI L+E+M  EG+ P+ ITF+ VL+AC H GL  
Sbjct: 300 GEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCD 359

Query: 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
            G + FE M   YGI P  DHY+  +DLLCRAGK   A D I S+PF+P    +  LLA 
Sbjct: 360 FGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMPFEPHPSAYGTLLAA 419

Query: 597 CRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEP 656
           CR++ N++    AA +L +  P  AG YV L+N+YA   +WDD +RVR+ M+D  V K P
Sbjct: 420 CRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAVANQWDDVSRVRRWMKDNTVVKTP 479

Query: 657 GCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKE 716
           G SWIE+   +H F  +D  HP+   +++ L QL   M+++GYVPD  FVLHD++   K 
Sbjct: 480 GYSWIEIKGVLHEFRSNDRLHPQLYLIHEKLGQLAERMKEMGYVPDLDFVLHDVDETMKV 539

Query: 717 YALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRF 776
             L  HSEKLA+AFGL+    G T+R+ KNLR+CGDCHNA K +S +  REI++RD  RF
Sbjct: 540 QMLMRHSEKLAIAFGLISTAHGMTLRIFKNLRVCGDCHNAAKVISMIEDREIILRDTTRF 599

Query: 777 HHFRDGKCSCGDYW 790
           HHFR G CSC DYW
Sbjct: 600 HHFRGGHCSCDDYW 613



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 170/369 (46%), Gaps = 73/369 (19%)

Query: 65  KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
           +L  AR LFD IP PD+V+  TL+  + AS +   AR +F   P+  RD   +N M++  
Sbjct: 64  RLADARHLFDRIPTPDVVSYNTLLLCHFASGDADGARRLFASMPV--RDVASWNTMVSGL 121

Query: 125 SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLF 184
           S +                                   VEE K        VV     + 
Sbjct: 122 SKSG---------------------------------AVEEAK--------VVFLAMPVR 140

Query: 185 TSV-LNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER-DELSWTTMMTGYVKNDYLD 242
            SV  NA++S +         +    M  A   F   PE+ D + WT M++GY+    + 
Sbjct: 141 NSVSWNAMVSGF---------ACSGDMSTAEEWFRNAPEKEDAVLWTAMVSGYMDIGNVV 191

Query: 243 AAREFLDGMSENVGVAWNALISGYV---HRELKMLMLR-------IQLDEFTYTSVISAC 292
            A ++ + M     V+WNA+++GYV   H +  + + R       +Q +  T +SV+  C
Sbjct: 192 KAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGC 251

Query: 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL 352
           +N      GKQ+H + +    K     +L V  +LV++Y KCG ++ A  +F +M  RD+
Sbjct: 252 SNLSALGFGKQIHQWCM----KLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDV 307

Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMR----ERNLLSWTVMISGLAQNGYGEEGLKLFSQ 408
           V+WNA++S Y   G   EA +LFE M+    E N +++ V+++     G  + G++ F  
Sbjct: 308 VAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCFEG 367

Query: 409 MR-LEGFKP 416
           M+ L G +P
Sbjct: 368 MQELYGIEP 376


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 266/771 (34%), Positives = 399/771 (51%), Gaps = 77/771 (9%)

Query: 27  NPITSSLARSVHAHMISSGF-----KPREHIINRLID-IYCKSLKLVYARTLFDEIPQPD 80
            P T   A  +HA + +SG          H++N L++ +    L L YA  LFD +P   
Sbjct: 8   TPRTVRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRMPPST 67

Query: 81  IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
            +  T L A   A                                  S+ H    LFR M
Sbjct: 68  FLFDTALRACSRA---------------------------------GSDPHRPFLLFRRM 94

Query: 141 RRDDVKPDNFTFTSVLSALALIVEEEKQ--CMQMHCTVVKS---GTGLFTSVLNALISVY 195
           RR  V+PD FTF  +    +          C  +H   +++       F S  N+LI +Y
Sbjct: 95  RRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVS--NSLIHMY 152

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
           ++           L   ARR FDE+  +D ++WT +++G  K   L   +  L       
Sbjct: 153 IRL---------GLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRD 203

Query: 256 GVAWNALISGYVH----REL-----KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
            ++W +LI+ Y      RE       ML   I  DE T  +V+SACA      LG+ +H 
Sbjct: 204 VISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLH- 262

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM-----PERDLVSWNAILSA 361
            L+  +  PT E +L V  AL+ +Y KCG    A+ +F+ +     P+    SWNAI+  
Sbjct: 263 LLVEEKGMPTSE-NLVV--ALIDMYAKCGDFGHAQQVFDALGRGPRPQ----SWNAIIDG 315

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
           Y   G +D A+SLF+ M  R+++++  M++G   +G   E L LF  MR    +  ++  
Sbjct: 316 YCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTV 375

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
              +T+CA LGAL+ GR LHA +     ++ +  G AL+ MY +CG V+ A  VF  M  
Sbjct: 376 VNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGK 435

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY 541
            D  +W AMIA L  +G G  A+E + QM  +G  P+ ++++ VL+AC+H+ L+ EGR Y
Sbjct: 436 RDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLY 495

Query: 542 FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
           F+ M   Y I P  +HY   IDLL R+G   EA D++ ++P +P+A IW ++L+ CR+H 
Sbjct: 496 FDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHK 555

Query: 602 NIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWI 661
           +IDL   AAE L +L P   G YV L N+Y +  +W++A+++R LM +R VKK  G S I
Sbjct: 556 HIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSI 615

Query: 662 EVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALST 721
            V  +VH F+V D +HP    +   LE++   ++ LGY P T  +  D++ ++KE AL  
Sbjct: 616 TVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQITVDVDEEEKEQALLA 675

Query: 722 HSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRD 772
           HSEKLA+AFGL+ L     V + KNLR+C DCH+A K +S++  REI+VRD
Sbjct: 676 HSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNREIIVRD 726


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/644 (36%), Positives = 344/644 (53%), Gaps = 64/644 (9%)

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           P ++     ++ L      + +  Q+H   ++ G  L    +   +   +    SP    
Sbjct: 34  PKSYILKKCIALLLSCASSKFKFRQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSP---- 89

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              M  A ++F ++   +  +W TM+ GY +++    A E    M  +            
Sbjct: 90  ---MSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSC----------- 135

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                      I+ D  TY  ++ A A     R G++VH+  +R       E  + V N 
Sbjct: 136 -----------IEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGF----ESLVFVQNT 180

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           LV +Y  CG                                 + A  LFE M ERNL++W
Sbjct: 181 LVHMYAACGHA-------------------------------ESAHKLFELMAERNLVTW 209

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
             +I+G A NG   E L LF +M L G +P  +     +++CA LGAL  GR+ H  +V 
Sbjct: 210 NSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVK 269

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
            G D +L AGNAL+ +YA+CG +  A+ VF+ M     VSW ++I  L  +G G  A+EL
Sbjct: 270 VGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALEL 329

Query: 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
           ++++ ++G++P  ITF+ VL AC+H G+V EG  YF+ M   YGI P  +HY   +DLL 
Sbjct: 330 FKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLG 389

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626
           RAG   +A + I ++P +P+A +W  LL  C IHG++ LG  A  QL QL P H+G YVL
Sbjct: 390 RAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVL 449

Query: 627 LSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKY 686
           LSN+YA+  RW D  +VR+ M   GVKK PG S +E+ N++H F++ D +HP+ + +Y  
Sbjct: 450 LSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVK 509

Query: 687 LEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKN 746
           L ++   ++  GYVP    VL D+E ++KE ALS HSEK+A+AF L+    G  +RV+KN
Sbjct: 510 LAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAAGIPIRVVKN 569

Query: 747 LRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           LR+C DCH A K +SKV  REIVVRD  RFHHF+DG CSC DYW
Sbjct: 570 LRVCADCHLAIKLISKVFDREIVVRDRSRFHHFKDGHCSCKDYW 613



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 104/475 (21%), Positives = 208/475 (43%), Gaps = 80/475 (16%)

Query: 48  PREHIINRLIDIY--CKSLKL----VYARTLFDEIP--QPDIVARTTLIAAYSASDNVKL 99
           P+ +I+ + I +   C S K     ++A ++   +P   PD+  +  +    S    +  
Sbjct: 34  PKSYILKKCIALLLSCASSKFKFRQIHAFSIRHGVPLTNPDM-GKYLIFTLLSFCSPMSY 92

Query: 100 AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL 159
           A ++F++  ++  +   +N MI  Y+ + N   A+EL+R M    ++PD  T+  +L A+
Sbjct: 93  AHQIFSQ--IQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAI 150

Query: 160 ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDE 219
           A ++ + ++  ++H   +++G      V N L+ +Y  C  +          +A ++F+ 
Sbjct: 151 AKLM-DVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAE---------SAHKLFEL 200

Query: 220 MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQ 279
           M ER+ ++W +++ GY  N   + A      M                       +  ++
Sbjct: 201 MAERNLVTWNSVINGYALNGRPNEALTLFREMG----------------------LRGVE 238

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            D FT  S++SACA  G   LG++ H Y+++       + +L   NAL+ LY KCG + +
Sbjct: 239 PDGFTMVSLLSACAELGALALGRRAHVYMVKVGL----DGNLHAGNALLDLYAKCGSIRQ 294

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
           A  +F++M E+ +VSW +++      G   EA                            
Sbjct: 295 AHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEA---------------------------- 326

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNA 458
              L+LF ++  +G  P +  F G + +C+  G ++ G     ++    G    +     
Sbjct: 327 ---LELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGC 383

Query: 459 LITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           ++ +  R G+V+ A+     MP   ++V W  ++ A   HG+ A       Q+L+
Sbjct: 384 MVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQ 438



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 57/153 (37%), Gaps = 45/153 (29%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           +L R  H +M+  G     H  N L+D+Y K   +  A  +FDE+ +  +V+ T+LI   
Sbjct: 258 ALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGL 317

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
           +                                  N  G  A+ELF+++ R  + P   T
Sbjct: 318 AV---------------------------------NGFGKEALELFKELERKGLMPSEIT 344

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLF 184
           F  VL A +            HC +V  G   F
Sbjct: 345 FVGVLYACS------------HCGMVDEGFDYF 365


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 263/781 (33%), Positives = 406/781 (51%), Gaps = 114/781 (14%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L  S+H  +I  GF+    + N +I +Y K   +V+AR +FDE+    I           
Sbjct: 144 LGASIHGCVIRLGFESNVFVCNAVISMYGKCKAVVHARKVFDELCYRGIC---------- 193

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPDNFT 151
                               D+V +N++++ YSH    + A+ LFR+M     + PD   
Sbjct: 194 --------------------DSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVG 233

Query: 152 FTSVLSALALIVEEEKQC-MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
             ++L     +      C  Q+H   V+SG      V NAL+ +Y KC           M
Sbjct: 234 VVNILPVCGYL--GLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKC---------GKM 282

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV----GVAWNALISGY 266
             A +VF+ M  +D ++W  M+TGY +N   + A      M E       V W+++ISGY
Sbjct: 283 EDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGY 342

Query: 267 VHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY----LLRTEA 313
             R           +M   R + +  T  S++SACA+ G    GK+ H Y    +L+ E 
Sbjct: 343 AQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEH 402

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
               +  L V NAL+ +Y KC  +  AR +F+++  +D                      
Sbjct: 403 NDDTD-DLAVINALIDMYAKCKSLEVARAMFDEICPKD---------------------- 439

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RLEG-FKPCDYAFAGAITSCAGL 431
                  R++++WTVMI G AQ+G     L+LFS+M +++    P D+  +  + +CA L
Sbjct: 440 -------RDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARL 492

Query: 432 GALENGRQLHAQLVH-SGYDSS-LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
            AL+ G+Q+HA ++  S  DS  L   N LI MY++ G V+ A  VF++M   ++VSW +
Sbjct: 493 AALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTS 552

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY 549
           ++   G HG    A  ++++M KE ++ D ITFL VL AC+H+G+              +
Sbjct: 553 LLTGYGMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACSHSGM-------------DF 599

Query: 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609
           G+ PG +HYA  +DLL RAG+  EA  +I+ +P +P+  +W ALL+ CRIH N +L   A
Sbjct: 600 GVDPGVEHYACMVDLLGRAGRLGEAMRLINDMPIEPTPVVWIALLSACRIHSNEELAEFA 659

Query: 610 AEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHV 669
           A++L +L   + GTY LLSN+YAN  RW D AR+  LM+  G+KK PG SW++    +  
Sbjct: 660 AKKLLELKADNDGTYTLLSNIYANARRWKDVARIGYLMKRTGIKKIPGWSWVKGRKGMET 719

Query: 670 FLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVA 729
           F V D  H ++Q +Y+ L  L+  ++         F LHD++ ++K   LS HSEKLA+A
Sbjct: 720 FYVGDRTHLQSQKIYETLADLIKRIK-------ANFSLHDVDDEEKGDQLSEHSEKLALA 772

Query: 730 FGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
           + ++ LP GA +R+ KNLRICGD H+A  ++S +V  EI++RD  RFH F++G CSC  Y
Sbjct: 773 YAILTLPPGAPIRITKNLRICGDFHSAITYISMIVEHEIILRDSSRFHQFKNGSCSCKGY 832

Query: 790 W 790
           W
Sbjct: 833 W 833



 Score =  209 bits (533), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 162/564 (28%), Positives = 267/564 (47%), Gaps = 59/564 (10%)

Query: 61  CKSL---KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFY 117
           CK+L   KL++ + + +          T LI  Y +S+++  A  +  K       +V++
Sbjct: 34  CKTLTQAKLLHQQYIINGHLLNSYTNVTNLIYTYISSNSITNAILLLEKNVTPSHSSVYW 93

Query: 118 -NAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTV 176
            N +I    H ++ + A+ LFR M+     PD++TF  V  A   I   E     +H  V
Sbjct: 94  WNQLIRHALHFNSPNTALRLFRRMKTLHWTPDHYTFPFVFKACGEISNFELG-ASIHGCV 152

Query: 177 VKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER---DELSWTTMMT 233
           ++ G      V NA+IS+Y KC +         +  AR+VFDE+  R   D ++W ++++
Sbjct: 153 IRLGFESNVFVCNAVISMYGKCKA---------VVHARKVFDELCYRGICDSVTWNSIVS 203

Query: 234 GYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACA 293
            Y      + A      M+   G                     I  D     +++  C 
Sbjct: 204 VYSHCFVPNVAVSLFREMTVGYG---------------------ILPDTVGVVNILPVCG 242

Query: 294 NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV 353
             GL   G+QVH + +R+         + V NALV +Y KCGK+ +A  +F +M  +D+V
Sbjct: 243 YLGLGLCGRQVHGFCVRSGLVE----DVFVGNALVDMYAKCGKMEDANKVFERMRFKDVV 298

Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRER----NLLSWTVMISGLAQNGYGEEGLKLFSQM 409
           +WNA+++ Y   G  ++A SLF  MRE     ++++W+ +ISG AQ G+G E + +F QM
Sbjct: 299 TWNAMVTGYSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQM 358

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV-------HSGYDSSLSAGNALITM 462
                +P        +++CA +GAL +G++ H   V       H+     L+  NALI M
Sbjct: 359 CGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDM 418

Query: 463 YARCGVVEAANCVFNTM--PNVDSVSWNAMIAALGQHGNGARAIELYEQMLK--EGILPD 518
           YA+C  +E A  +F+ +   + D V+W  MI    QHG+   A++L+ +M K    I+P+
Sbjct: 419 YAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPN 478

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR-FIDLLCRAGKFSEAKDV 577
             T   VL AC     +K G++    +     I       A   ID+  ++G    A+ V
Sbjct: 479 DFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVV 538

Query: 578 IDSLPFKPSAPIWEALLAGCRIHG 601
            DS+  K +A  W +LL G  +HG
Sbjct: 539 FDSMS-KRNAVSWTSLLTGYGMHG 561



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 119/258 (46%), Gaps = 17/258 (6%)

Query: 358 ILSAYVSAGLIDEAKSLFE---AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF 414
           ++  Y+S+  I  A  L E        ++  W  +I            L+LF +M+   +
Sbjct: 63  LIYTYISSNSITNAILLLEKNVTPSHSSVYWWNQLIRHALHFNSPNTALRLFRRMKTLHW 122

Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
            P  Y F     +C  +   E G  +H  ++  G++S++   NA+I+MY +C  V  A  
Sbjct: 123 TPDHYTFPFVFKACGEISNFELGASIHGCVIRLGFESNVFVCNAVISMYGKCKAVVHARK 182

Query: 475 VFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQM-LKEGILPDRITFLTVLSACN 530
           VF+ +      DSV+WN++++          A+ L+ +M +  GILPD +  + +L  C 
Sbjct: 183 VFDELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCG 242

Query: 531 HAGLVKEGRRYFETMHGPYGIPPG--EDHYA--RFIDLLCRAGKFSEAKDVIDSLPFKPS 586
           + GL   GR+    +HG + +  G  ED +     +D+  + GK  +A  V + + FK  
Sbjct: 243 YLGLGLCGRQ----VHG-FCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFK-D 296

Query: 587 APIWEALLAGCRIHGNID 604
              W A++ G   +G  +
Sbjct: 297 VVTWNAMVTGYSQNGRFE 314


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 242/641 (37%), Positives = 364/641 (56%), Gaps = 33/641 (5%)

Query: 167 KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDEL 226
           K   Q+H  V K  TGL T  + A   +    VS P       +  ARR+F   P  D  
Sbjct: 19  KNLKQVHAYVCK--TGLDTDPIIAGKLLLHSAVSVP-----DALDYARRLFLHFPNPDVF 71

Query: 227 SWTTMMTGYVKND--------YLDAAREF---LDGMS----ENVGVAWNALISGYVHREL 271
              T++ G  ++D        +++  R     LD  S         ++ +L SG +    
Sbjct: 72  MHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESG-IQLHC 130

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
           + ++  +    F  T+++S  +  G     K+V   +         E ++   NA+VT  
Sbjct: 131 QAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMF--------EPNVVAWNAVVTAC 182

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
           ++CG V  A  +FN+MP R+L SWN +L+ Y  AG ++ A+ LF  M  ++ +SW+ MI 
Sbjct: 183 FRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIV 242

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
           G A NG+  E    F +++  G +P + +  GA+++CA  GA+E G+ LH  +  SG+  
Sbjct: 243 GFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLW 302

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDS-VSWNAMIAALGQHGNGARAIELYEQM 510
            +S  NAL+  Y++CG V  A  VF  MP   S VSW +MIA L  HG G  AI+L+ +M
Sbjct: 303 MVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEM 362

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
            + GI PD I F+++L AC+HAGL+++G  YF  M   Y I P  +HY   +DL  RAG+
Sbjct: 363 EESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQ 422

Query: 571 FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630
             +A + I  +P  P+A IW  LL  C IHGN+ L  +  E+L +L P+++G +VLLSN+
Sbjct: 423 LDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNI 482

Query: 631 YANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQL 690
           YA  G+W D A VR+ M D+ + K PG S IEVD  ++ F+  +  +   +  Y+ L+++
Sbjct: 483 YAVAGKWKDVAAVRRSMTDQRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAYEKLKEI 542

Query: 691 VLEMRKLG-YVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRI 749
           +L++R  G Y+P+   VLHD+E ++KE ++S HSEKLAVAFG+ +L  G+ +R++KNLR+
Sbjct: 543 MLKLRVEGCYIPEVGSVLHDIEDEEKEDSVSRHSEKLAVAFGIARLCKGSIIRIVKNLRV 602

Query: 750 CGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           C DCH   K +SKV G EIVVRD  RFH F+ G CSC DYW
Sbjct: 603 CRDCHTVMKLISKVYGLEIVVRDRSRFHSFKTGSCSCRDYW 643



 Score =  145 bits (366), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 132/515 (25%), Positives = 216/515 (41%), Gaps = 110/515 (21%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSL--KLVYARTLFDEIPQPDIVARTTLIAAYS 92
           + VHA++  +G      I  +L+     S+   L YAR LF   P PD+    TLI   +
Sbjct: 22  KQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNPDVFMHNTLIRGLA 81

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP-DNFT 151
            SD           TP         N++IT              F +MRR    P D+F+
Sbjct: 82  ESD-----------TP--------QNSLIT--------------FVEMRRRLTAPLDSFS 108

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF-------- 203
           F  +L A A     E   +Q+HC  +  G      V   L+S+Y +C    F        
Sbjct: 109 FAFLLKAAASYRSLESG-IQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEM 167

Query: 204 -----VSSRSLMGAARR---------VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD 249
                V+  +++ A  R         +F+ MP R+  SW  M+ GY K   L+ AR+   
Sbjct: 168 FEPNVVAWNAVVTACFRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFL 227

Query: 250 GMSENVGVAWNALISGYVH-----------RELKMLMLRIQLDEFTYTSVISACANSGLF 298
            M     V+W+ +I G+ H           REL+ + +R   +E + T  +SACA++G  
Sbjct: 228 EMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRP--NEVSLTGALSACADAGAI 285

Query: 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE-RDLVSWNA 357
             GK +H ++     K    + + VNNAL+  Y KCG V  AR +F +MPE R +VSW +
Sbjct: 286 EFGKILHGFI----EKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTS 341

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
           +++     G  +EA                               ++LF +M   G +P 
Sbjct: 342 MIAGLAMHGYGEEA-------------------------------IQLFHEMEESGIRPD 370

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVH-SGYDSSLSAGNALITMYARCGVVEAANCVF 476
             AF   + +C+  G +E G +   ++      + ++     ++ +Y R G ++ A    
Sbjct: 371 GIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFI 430

Query: 477 NTMPNVDS-VSWNAMIAALGQHGNGARAIELYEQM 510
             MP + + + W  ++ A   HGN   A  + E++
Sbjct: 431 IHMPVLPTAIIWRTLLGACSIHGNVKLAERVKERL 465



 Score =  105 bits (263), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 163/375 (43%), Gaps = 66/375 (17%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           +H   I  G      +   L+ +Y +   + +A+ +F+E+ +P++VA   ++ A     +
Sbjct: 128 LHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGD 187

Query: 97  VKLAREMFNKTPLK-----------------------------MRDTVFYNAMITAYSHN 127
           VK A  MFN+ P +                             ++D V ++ MI  ++HN
Sbjct: 188 VKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHN 247

Query: 128 SNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSV 187
              + A   FR++++  ++P+  + T  LSA A     E   + +H  + KSG     SV
Sbjct: 248 GFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKI-LHGFIEKSGFLWMVSV 306

Query: 188 LNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE-RDELSWTTMMTGYVKNDYLDAARE 246
            NAL+  Y KC +         +G AR VF+ MPE R  +SWT+M+ G   + Y + A +
Sbjct: 307 NNALLDTYSKCGN---------VGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQ 357

Query: 247 FLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
               M E          SG            I+ D   + S++ AC+++GL   G   + 
Sbjct: 358 LFHEMEE----------SG------------IRPDGIAFISILYACSHAGLIEKG---YE 392

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL-VSWNAILSAYVSA 365
           Y  + +     E ++     +V LY + G++++A +    MP     + W  +L A    
Sbjct: 393 YFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIH 452

Query: 366 GLIDEAKSLFEAMRE 380
           G +  A+ + E + E
Sbjct: 453 GNVKLAERVKERLSE 467


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/643 (37%), Positives = 358/643 (55%), Gaps = 52/643 (8%)

Query: 167 KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDEL 226
           ++  Q+H  +VK+G     ++   ++ +     +S F      +G A  VFD++PER+  
Sbjct: 29  RELKQVHAFLVKTGQTHDNAIATEILRL---SATSDFRD----IGYALSVFDQLPERNCF 81

Query: 227 SWTTMMTGY--VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFT 284
           +W T++      ++ +LDA   F   +SE                        ++ ++FT
Sbjct: 82  AWNTVIRALAETQDRHLDALLVFCQMLSEAT----------------------VEPNQFT 119

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           + SV+ ACA       GKQVH  LL+       EF   V   L+ +Y  CG + +A  +F
Sbjct: 120 FPSVLKACAVMARLAEGKQVHGLLLKF-GLVDDEF---VVTNLLRMYVMCGSMEDANVLF 175

Query: 345 NQMPE---------RD-------LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV 388
            +  E         RD       +V  N ++  Y   G +  A+ LF+ M +R+++SW V
Sbjct: 176 YRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNV 235

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEG-FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447
           MISG AQNG+ +E +++F +M   G   P        + + + LG LE G+ +H     +
Sbjct: 236 MISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKN 295

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
                   G+AL+ MYA+CG +E A  VF  +P  + ++WNA+I  L  HG         
Sbjct: 296 KIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYL 355

Query: 508 EQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR 567
            +M K GI P  +T++ +LSAC+HAGLV EGR +F  M    G+ P  +HY   +DLL R
Sbjct: 356 SRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGR 415

Query: 568 AGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627
           AG   EA+++I ++P KP   IW+ALL   ++H NI +G++AAE L Q+ PH +G YV L
Sbjct: 416 AGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVAL 475

Query: 628 SNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYL 687
           SNMYA+ G WD  A VR +M+D  ++K+PGCSWIE+D  +H FLV+D +H  A+ ++  L
Sbjct: 476 SNMYASSGNWDGVAAVRLMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSML 535

Query: 688 EQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNL 747
           E++  ++   G++PDT  VL  M+   KE  L  HSEK+AVAFGL+  P    + ++KNL
Sbjct: 536 EEISNKLSLEGHMPDTTQVLLKMDEKHKESVLHYHSEKIAVAFGLISTPPKTPLCIVKNL 595

Query: 748 RICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           RIC DCH++ K +SK+  R+IV+RD KRFHHF  G CSC DYW
Sbjct: 596 RICEDCHSSMKLISKMYERKIVIRDRKRFHHFEHGSCSCMDYW 638



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 129/480 (26%), Positives = 214/480 (44%), Gaps = 70/480 (14%)

Query: 61  CKS---LKLVYARTLFDEIPQPDIVARTTL-IAAYSASDNVKLAREMFNKTPLKMRDTVF 116
           CKS   LK V+A  +       + +A   L ++A S   ++  A  +F++ P   R+   
Sbjct: 25  CKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLP--ERNCFA 82

Query: 117 YNAMITAYSHNSNGHA-AIELFRDMRRD-DVKPDNFTFTSVLSALALIVEEEKQCMQMHC 174
           +N +I A +   + H  A+ +F  M  +  V+P+ FTF SVL A A ++    +  Q+H 
Sbjct: 83  WNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACA-VMARLAEGKQVHG 141

Query: 175 TVVKSGTGLFTSVLNALISVYVKCVS---SPFVSSRSLMGA---ARRVFDEMP-ERDELS 227
            ++K G      V+  L+ +YV C S   +  +  R++ G       V DE   E + + 
Sbjct: 142 LLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVL 201

Query: 228 WTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV------------HRELKMLM 275
              M+ GY +   L AARE  D M++   V+WN +ISGY             HR   M M
Sbjct: 202 CNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHR--MMQM 259

Query: 276 LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG 335
             +  +  T  SV+ A +  G+  LGK VH Y  + + +        + +ALV +Y KCG
Sbjct: 260 GDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIR----IDDVLGSALVDMYAKCG 315

Query: 336 KVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQ 395
            + +A  +F ++P+ ++++WNA+                               I GLA 
Sbjct: 316 SIEKAIQVFERLPQNNVITWNAV-------------------------------IGGLAM 344

Query: 396 NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLS 454
           +G   +     S+M   G  P D  +   +++C+  G ++ GR     +V+S G    + 
Sbjct: 345 HGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIE 404

Query: 455 AGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN---GARAIELYEQM 510
               ++ +  R G +E A  +   MP   D V W A++ A   H N   G RA E+  QM
Sbjct: 405 HYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQM 464


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 247/687 (35%), Positives = 358/687 (52%), Gaps = 85/687 (12%)

Query: 113 DTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQM 172
           +   YN +I  + +N   H  ++LF  +R+  +    FTF  VL A        K  + +
Sbjct: 75  NIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTR-ASNRKLGIDL 133

Query: 173 HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMM 232
           H  VVK G     + + +L+S+Y         S    +  A +VF+E+PER         
Sbjct: 134 HSLVVKCGFNHDVAAMTSLLSIY---------SGSGRLNDAHKVFEEIPERSV------- 177

Query: 233 TGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV----HREL-----KMLMLRIQLDEF 283
                                   V W AL SGY     HRE      KM+ + ++ D +
Sbjct: 178 ------------------------VTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSY 213

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
               V+SAC + G    G+ +  ++   E +        V   LV LY KCGK+ +AR  
Sbjct: 214 FIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNS----FVRTTLVNLYAKCGKMEKAR-- 267

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
                                        S+F++M E+++++W+ MI G A N + +EG+
Sbjct: 268 -----------------------------SVFDSMGEKDIVTWSTMIQGYASNSFPKEGI 298

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
           + F QM  E  KP  ++  G ++SCA LGAL+ G    + +    + ++L   NALI MY
Sbjct: 299 EFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMY 358

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
           A+CG +     VF  M   D V  NA I+ L ++G+   +  ++ Q  K GI PD  TFL
Sbjct: 359 AKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFL 418

Query: 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF 583
            +L  C HAGL+++G R+F  +   Y +    +HY   +DL  RAG   +A  +I  +P 
Sbjct: 419 GLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPM 478

Query: 584 KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARV 643
           +P+A +W ALL+GCR+  +  L     ++L  L P +AG YV LSN+Y+  GRWD+AA V
Sbjct: 479 RPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVSGRWDEAAEV 538

Query: 644 RKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDT 703
           R +M  +G+KK PG SWIE++  VH FL DD +HP +  +Y  LE L  EMR +G+VP T
Sbjct: 539 RDMMNRKGMKKIPGYSWIELEGTVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTT 598

Query: 704 KFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKV 763
           +FV  D+E ++KE  L  HSEKLAVAFGL+    G  +RV+KNLR+CGDCH   K +SK+
Sbjct: 599 EFVFFDVEDEEKERVLGHHSEKLAVAFGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKI 658

Query: 764 VGREIVVRDGKRFHHFRDGKCSCGDYW 790
             REIVVRD  RFH F +G CSC DYW
Sbjct: 659 TRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 111/442 (25%), Positives = 193/442 (43%), Gaps = 83/442 (18%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+ A T+L++ YS S  +  A ++F + P   R  V + A+ + Y+       AI+LF+ 
Sbjct: 145 DVAAMTSLLSIYSGSGRLNDAHKVFEEIP--ERSVVTWTALFSGYTTAGKHREAIDLFKK 202

Query: 140 MRRDDVKPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
           M    V+PD++    VLSA   + + +  + +  H   ++     F  V   L+++Y KC
Sbjct: 203 MVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSF--VRTTLVNLYAKC 260

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
                      M  AR VFD M E+D ++W+TM+ GY  N +     EF           
Sbjct: 261 ---------GKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFF---------- 301

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                       L+ML   ++ D+F+    +S+CA+ G   LG+   + + R E      
Sbjct: 302 ------------LQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLT--- 346

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
            +L + NAL+ +Y KCG +    ++F +M E+D+V  NA                     
Sbjct: 347 -NLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNA--------------------- 384

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG- 437
                      ISGLA+NG+ +    +F Q    G  P    F G +  C   G +++G 
Sbjct: 385 ----------AISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGL 434

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQ 496
           R  +A         ++     ++ ++ R G+++ A  +   MP   +++ W A+++    
Sbjct: 435 RFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLS---- 490

Query: 497 HGNGARAI---ELYEQMLKEGI 515
              G R +   +L E +LKE I
Sbjct: 491 ---GCRLVKDTQLAETVLKELI 509



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 124/272 (45%), Gaps = 12/272 (4%)

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
           LF   +  N+  +  +I+G   N    E L LF  +R  G     + F   + +C     
Sbjct: 67  LFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASN 126

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
            + G  LH+ +V  G++  ++A  +L+++Y+  G +  A+ VF  +P    V+W A+ + 
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSG 186

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
               G    AI+L+++M++ G+ PD    + VLSAC H G +  G    + M     +  
Sbjct: 187 YTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHME---EMEM 243

Query: 554 GEDHYAR--FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611
            ++ + R   ++L  + GK  +A+ V DS+  K     W  ++ G   +     GI+   
Sbjct: 244 QKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVT-WSTMIQGYASNSFPKEGIEFFL 302

Query: 612 QLFQ--LMPHHAGTYVLLSNMYA----NLGRW 637
           Q+ Q  L P        LS+  +    +LG W
Sbjct: 303 QMLQENLKPDQFSIVGFLSSCASLGALDLGEW 334


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/544 (40%), Positives = 326/544 (59%), Gaps = 15/544 (2%)

Query: 259 WNALISGYV-------HRELKMLMLR--IQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
           +NALI GY+         E   LM +  +    FT+T++  AC       LG+Q+H   +
Sbjct: 114 YNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQTI 173

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLID 369
                      L V N+++ +Y KCG +   R +F++MP RD++SW  ++SAYV +G ++
Sbjct: 174 LVGGFGE---DLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNME 230

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
            A  LF+ +  +++++WTVM+SG AQN    E +  F +M+  G +  +    G I++CA
Sbjct: 231 SAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACA 290

Query: 430 GLGALENGRQLH--AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
            LGA +    +   A+    G   S+  G+ALI MY++CG V  A  VF  M   +  S+
Sbjct: 291 QLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSY 350

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
           ++MI     HG    A++L+++M+K  I P+R+TF+ VL+AC+HAG+V++G + FE M  
Sbjct: 351 SSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEK 410

Query: 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
            YGI P  DHY   +DLL RAG+  EA +++ ++P +P   +W ALL  CRIH + D+  
Sbjct: 411 CYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAA 470

Query: 608 QAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNK- 666
            AA  LF+L P+  G Y+LL+N+YA+ GRW+D + VRKLMR RG++K P  SWIE +   
Sbjct: 471 IAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGM 530

Query: 667 VHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKL 726
           VH F   D  HP +  + + LE L+  +   GY P    V +D+  + K   L THSEKL
Sbjct: 531 VHEFFSGDMTHPRSGEIKQALEDLLDRLEAKGYQPHLSSVSYDVNDEDKRRILMTHSEKL 590

Query: 727 AVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSC 786
           A+AFGL+    G+ +R++KNLRIC DCH+     S++ GREI+VRD  RFHHF DG CSC
Sbjct: 591 ALAFGLISTIPGSKIRIVKNLRICEDCHSVICGASQITGREIIVRDIMRFHHFHDGICSC 650

Query: 787 GDYW 790
           G++W
Sbjct: 651 GNFW 654



 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 131/460 (28%), Positives = 213/460 (46%), Gaps = 75/460 (16%)

Query: 61  CKSL---KLVYARTLFDEIPQPDIVART---TLIAAYSASDNVKLAREMFNKTPLKMRDT 114
           CK+L   K V+AR L + + Q   V      TL       D   L+  +FN+  +   + 
Sbjct: 56  CKNLTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLS--IFNQ--VNYPNP 111

Query: 115 VFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHC 174
             YNA+I  Y        + E +  MR++ V P +FTFT++  A    ++      Q+H 
Sbjct: 112 FLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLG-RQIHG 170

Query: 175 -TVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMT 233
            T++  G G    V N++I +Y+KC           +   R+VFDEMP RD +SWT +++
Sbjct: 171 QTILVGGFGEDLHVGNSMIDMYIKC---------GFLECGRKVFDEMPNRDVISWTELIS 221

Query: 234 GYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH----RELKMLMLRIQ-----LDEFT 284
            YVK+  +++A E  DG+     VAW  ++SG+      RE  M   ++Q      DE T
Sbjct: 222 AYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEIT 281

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF----SLPVNNALVTLYWKCGKVNEA 340
              VISACA     +LG   +A  +R  A+ + EF    S+ V +AL+ +Y KCG V +A
Sbjct: 282 LIGVISACA-----QLGAAKYADWIRDVAEKS-EFGGKHSVVVGSALIDMYSKCGSVGDA 335

Query: 341 RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGE 400
             +F  M ER++ S+++++  +   G + +A                             
Sbjct: 336 YRVFQGMKERNVYSYSSMILGFAMHGRVHDA----------------------------- 366

Query: 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN--A 458
             +KLF +M     KP    F G +T+C+  G +E G Q+  +L+   Y    SA +   
Sbjct: 367 --MKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIF-ELMEKCYGIKPSADHYTC 423

Query: 459 LITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQH 497
           ++ +  R G ++ A+ +  TMP       W A++ A   H
Sbjct: 424 MVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIH 463



 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 156/343 (45%), Gaps = 61/343 (17%)

Query: 33  LARSVHAHMI-SSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           L R +H   I   GF    H+ N +ID+Y K   L   R +FDE+P  D+++ T LI+AY
Sbjct: 164 LGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAY 223

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
             S N++ A E+F+  P+K  D V +  M++ ++ N+    AI  F  M+   V+ D  T
Sbjct: 224 VKSGNMESAGELFDGLPVK--DMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEIT 281

Query: 152 FTSVLSALALI-----------VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVS 200
              V+SA A +           V E+ +    H  VV S          ALI +Y KC S
Sbjct: 282 LIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGS----------ALIDMYSKCGS 331

Query: 201 SPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWN 260
                    +G A RVF  M ER+  S+++M+ G+  +  +  A +  D           
Sbjct: 332 ---------VGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFD----------- 371

Query: 261 ALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEF 319
                      +M+   I+ +  T+  V++AC+++G+   G Q+   + +    KP+ + 
Sbjct: 372 -----------EMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADH 420

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
                  +V L  + G++ EA ++   MP E     W A+L A
Sbjct: 421 Y----TCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGA 459



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 85/196 (43%), Gaps = 32/196 (16%)

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
           S+F  +   N   +  +I G       +E  + +S MR EG  P  + F     +C    
Sbjct: 101 SIFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKM 160

Query: 433 ALENGRQLHAQ-LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
            +  GRQ+H Q ++  G+   L  GN++I MY +CG +E    VF+ MPN D +SW  +I
Sbjct: 161 DVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELI 220

Query: 492 AALGQHGNGARAIEL-------------------------------YEQMLKEGILPDRI 520
           +A  + GN   A EL                               +E+M + G+  D I
Sbjct: 221 SAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEI 280

Query: 521 TFLTVLSACNHAGLVK 536
           T + V+SAC   G  K
Sbjct: 281 TLIGVISACAQLGAAK 296



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 15/200 (7%)

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG--VVEAANCVFNTMPNV 482
           +T+  G   L   +Q+HA+++ +G D S      LI    +    V      +FN +   
Sbjct: 50  VTTLDGCKNLTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNYP 109

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
           +   +NA+I           + E Y  M KEG++P   TF  +  AC     V  GR+  
Sbjct: 110 NPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQ-- 167

Query: 543 ETMHGPYGIPP--GEDHYA--RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCR 598
             +HG   +    GED +     ID+  + G     + V D +P +     W  L++   
Sbjct: 168 --IHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVIS-WTELISAYV 224

Query: 599 IHGNIDLGIQAAEQLFQLMP 618
             GN    +++A +LF  +P
Sbjct: 225 KSGN----MESAGELFDGLP 240


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/662 (35%), Positives = 369/662 (55%), Gaps = 43/662 (6%)

Query: 42   ISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAR 101
            + S F     ++N L+  Y +  +L  AR +FDEIP P+  +   L++A++       AR
Sbjct: 787  LKSPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADAR 846

Query: 102  EMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALAL 161
             +F+  P    D   YNA+I A + +S G  A+     M  DD   + ++F S LSA A 
Sbjct: 847  ALFHAIPDP--DQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACA- 903

Query: 162  IVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMP 221
              ++ +  +Q+H  V KS       + +AL+ +Y KC              ARRVF+ MP
Sbjct: 904  AEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKC---------EWPEEARRVFEAMP 954

Query: 222  ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLD 281
            ER+ +SW +++T Y +N  +  A      M          + +G+V             D
Sbjct: 955  ERNIVSWNSLITCYEQNGPVGEALVLFVSM----------MKAGFVP------------D 992

Query: 282  EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEAR 341
            E T  SV+SACA     R G+QVHA +++++        + ++NALV +Y KCG+   AR
Sbjct: 993  EVTLASVMSACAGLAADREGRQVHARVVKSDRFRE---DMVLSNALVDMYAKCGRTRAAR 1049

Query: 342  DIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEE 401
             +F++M  R +VS  ++++ Y  +  +++A+ +F  M E+N+++W V+I+  AQNG  EE
Sbjct: 1050 CVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEE 1109

Query: 402  GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY------DSSLSA 455
             L+LF +++ E   P  Y +   + +C  +  L+ G+Q H  ++  G+      +S +  
Sbjct: 1110 ALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFV 1169

Query: 456  GNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI 515
            GN+L+ MY + G ++    VF  M   D+VSWNAMI    Q+G    A+ L+E+ML    
Sbjct: 1170 GNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKE 1229

Query: 516  LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAK 575
             PD +T + VLSAC H+GLV+EGRRYF +M   +GI P +DHY   IDLL RAG   E +
Sbjct: 1230 SPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVE 1289

Query: 576  DVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLG 635
            ++I  +  +P A +W +LL  CR+H N+++G  AA +LF+L P ++G YVLLSNMYA LG
Sbjct: 1290 ELIKEMSMEPDAVLWASLLGSCRLHKNVEMGEWAAGKLFELDPRNSGPYVLLSNMYAELG 1349

Query: 636  RWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMR 695
            +W D  RVR  M+ RGV K+PGCSWIE+  KV VFL  D  HP    ++  L  + ++M 
Sbjct: 1350 KWADVFRVRSSMKHRGVSKQPGCSWIEIGRKVSVFLARDNGHPCKNEIHAILRIIQMQMS 1409

Query: 696  KL 697
            ++
Sbjct: 1410 RV 1411



 Score =  226 bits (576), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 168/597 (28%), Positives = 284/597 (47%), Gaps = 68/597 (11%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP----QPDIVARTTL 87
           S A S+ ++M S G +P++  +  ++    + L L  AR L   I     Q +++  T L
Sbjct: 133 SEALSLFSNMNSLGIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTAL 192

Query: 88  IAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147
           +  Y     +  AR  F+   +   + + +N ++  Y     G  A+++F  M    V+P
Sbjct: 193 VDVYGNCFLLADARRAFDD--ILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRP 250

Query: 148 DNFTFT-SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
             +T + +VL+       EE +C+  H  V++ G      V ++++ +Y KC        
Sbjct: 251 LGYTVSHAVLACRDNNALEEGRCI--HAFVLRHGYEHHVHVRSSVVDMYAKC-------- 300

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              M AA+ +F+  P +D +  T++++G      +  A+   +GM E   V+WNA+++GY
Sbjct: 301 -GAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGY 359

Query: 267 VHR-ELKMLMLRIQ--------LDEFTYTSVISACANSGLFRLGK--QVHAYLLRTEAKP 315
           +   +L   +L  Q         D  T  SV+SAC  +G+  +GK  +VHA+ ++     
Sbjct: 360 IRSMDLTGALLLFQQMRQETREFDAITLGSVLSAC--TGILDIGKGEEVHAFAIKCGF-- 415

Query: 316 TPEFSLPV-NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
              FS P+  NALV +Y KCG +  A  +                              L
Sbjct: 416 ---FSSPILKNALVRMYSKCGCLRSAERLL-----------------------------L 443

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
           FE   ER+  SW  +ISG  ++   E  L   ++M+ E   P    F+ A+ +CA +  L
Sbjct: 444 FEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQSE-VTPNQSTFSSALAACANIFLL 502

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
           + G Q+HA ++  GY+      + LI MY +C   + +  +F   P+ D + WN+MI   
Sbjct: 503 KQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGC 562

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
              G G   ++L+++M K+GI  D +TFL  L +C   G V+ GR YF  M     IP  
Sbjct: 563 AYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLMMDESIIPRI 622

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611
           E HY   I+LL + G   E +D ++ +PF+P+  +W  +   CR +GN  LG +AA+
Sbjct: 623 E-HYECMIELLGKHGCMVELEDFVEHMPFEPTTAMWLRIFDCCREYGNRKLGERAAK 678



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 150/537 (27%), Positives = 258/537 (48%), Gaps = 61/537 (11%)

Query: 88  IAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147
           I + +A  +V  ARE+F+  PL  RD   +NA+ITA S   +   A+ LF +M    ++P
Sbjct: 92  IESLAACGSVADARELFDLMPL--RDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRP 149

Query: 148 DNFTFTSVLSALALIVEEEKQCM------QMHCTVVKSGTGLFTSVLNALISVYVKCVSS 201
            + T  SVLS  A       +C+      Q+H  + K        +  AL+ VY  C   
Sbjct: 150 KDATMASVLSCCA-------ECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCF-- 200

Query: 202 PFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNA 261
                  L+  ARR FD++ E + +SW  ++  Y            L GM +        
Sbjct: 201 -------LLADARRAFDDILEPNAISWNVIVRRY-----------HLAGMGDMA------ 236

Query: 262 LISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
                V    +ML   ++   +T +  + AC ++     G+ +HA++LR       E  +
Sbjct: 237 -----VDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRH----GYEHHV 287

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
            V +++V +Y KCG ++ A+ +FN  P +D+V   +I+S   S G I +AK +FE M+ER
Sbjct: 288 HVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKER 347

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
           NL+SW  M++G  ++      L LF QMR E  +         +++C G+  +  G ++H
Sbjct: 348 NLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEVH 407

Query: 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAAN--CVFNTMPNVDSVSWNAMIAALGQHGN 499
           A  +  G+ SS    NAL+ MY++CG + +A    +F      DS SWN++I+   +H  
Sbjct: 408 AFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSM 467

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETM-HGPYGIPPGEDHY 558
              A+    +M  E + P++ TF + L+AC +  L+K+G +    M    Y I    D  
Sbjct: 468 SEAALYALTKMQSE-VTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEI----DDI 522

Query: 559 AR--FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
            R   ID+ C+  +F  +  + ++ P +    +W +++ GC   G  + G+   +++
Sbjct: 523 LRSVLIDMYCKCRQFDYSIRIFEARPSR-DVILWNSMIFGCAYSGKGEYGLDLFDEM 578



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 138/548 (25%), Positives = 235/548 (42%), Gaps = 110/548 (20%)

Query: 9   IRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVY 68
           +R L    +  +  C   N +     R +HA ++  G++   H+ + ++D+Y K   +  
Sbjct: 248 VRPLGYTVSHAVLACRDNNALEE--GRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDA 305

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           A++LF+  P  D+V  T++++  ++   +  A+ +F    +K R+ V +NAM+T Y  + 
Sbjct: 306 AQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEG--MKERNLVSWNAMLTGYIRSM 363

Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL 188
           +   A+ LF+ MR++  + D  T  SVLSA   I++  K   ++H   +K   G F+S +
Sbjct: 364 DLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKG-EEVHAFAIK--CGFFSSPI 420

Query: 189 --NALISVYVKCVSSPFVSSRSLMGAARRVFDEM-PERDELSWTTMMTGYVKNDYLDAAR 245
             NAL+ +Y KC          L  A R +  EM  ERD  SW ++++GY ++   +AA 
Sbjct: 421 LKNALVRMYSKC--------GCLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAAL 472

Query: 246 EFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
             L  M   V                         ++ T++S ++ACAN  L + G Q+H
Sbjct: 473 YALTKMQSEV-----------------------TPNQSTFSSALAACANIFLLKQGMQIH 509

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365
           AY++R       E    + + L+ +Y KC + + +  IF   P RD++ WN+        
Sbjct: 510 AYMIRK----GYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNS-------- 557

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425
                                  MI G A +G GE GL LF +M+ +G K     F GA+
Sbjct: 558 -----------------------MIFGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGAL 594

Query: 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV 485
            SC   G +  GR     ++    D S+                         +P ++  
Sbjct: 595 VSCISEGHVRLGRSYFTLMM----DESI-------------------------IPRIE-- 623

Query: 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETM 545
            +  MI  LG+HG      +  E M  E   P    +L +   C   G  K G R  + +
Sbjct: 624 HYECMIELLGKHGCMVELEDFVEHMPFE---PTTAMWLRIFDCCREYGNRKLGERAAKCI 680

Query: 546 HGPYGIPP 553
           +    + P
Sbjct: 681 NDSNPLTP 688



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 113/234 (48%), Gaps = 9/234 (3%)

Query: 355 WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF 414
           +N  + +  + G + +A+ LF+ M  R+  SW  +I+  ++ G+  E L LFS M   G 
Sbjct: 88  FNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGI 147

Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
           +P D   A  ++ CA    L   RQLH  +    + S++  G AL+ +Y  C ++  A  
Sbjct: 148 RPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARR 207

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
            F+ +   +++SWN ++      G G  A++++ +ML  G+ P   T    + AC     
Sbjct: 208 AFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNA 267

Query: 535 VKEGRRYFETMHGPYGIPPGEDHY----ARFIDLLCRAGKFSEAKDVIDSLPFK 584
           ++EGR     +H  + +  G +H+    +  +D+  + G    A+ + +  P K
Sbjct: 268 LEEGR----CIHA-FVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMK 316


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/573 (39%), Positives = 329/573 (57%), Gaps = 46/573 (8%)

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR-------ELKMLMLR--IQ 279
           T ++  YVK D L  AR   D M E   V+W A+IS Y  R        L + MLR   +
Sbjct: 97  TRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTE 156

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            +EFT+ +V+++C  S  F LG+Q+H++++    K   E  + V ++L+ +Y K GK++E
Sbjct: 157 PNEFTFATVLTSCIGSSGFVLGRQIHSHII----KLNYEAHVYVGSSLLDMYAKDGKIHE 212

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
                                          A+ +F+ + ER+++S T +ISG AQ G  
Sbjct: 213 -------------------------------ARGIFQCLPERDVVSCTAIISGYAQLGLD 241

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
           EE L+LF +++ EG +     +   +T+ +GL AL++G+Q+H  L+ S   S +   N+L
Sbjct: 242 EEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSL 301

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG-ILPD 518
           I MY++CG +  A  +F+T+     +SWNAM+    +HG G   +EL+  M+ E  + PD
Sbjct: 302 IDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPD 361

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETM-HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577
            +T L VLS C+H GL  +G   F  M  G   + P   HY   +D+L RAG+   A + 
Sbjct: 362 SVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEF 421

Query: 578 IDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRW 637
           +  +PF+PSA IW  LL  C +H N+D+G     QL Q+ P +AG YV+LSN+YA+ GRW
Sbjct: 422 VKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPENAGNYVILSNLYASAGRW 481

Query: 638 DDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKL 697
           +D   +R LM  + V KEPG SWIE+D  +H F   D +HP  + V   +++L    ++ 
Sbjct: 482 EDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDCSHPRREEVSAKVQELSARFKEA 541

Query: 698 GYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAF 757
           GYVPD   VLHD++ +QKE  L +HSEKLA+ FGL+  P    +RV+KNLRIC DCHN  
Sbjct: 542 GYVPDLSCVLHDVDEEQKEKILLSHSEKLALTFGLIATPESVPIRVIKNLRICVDCHNFA 601

Query: 758 KFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           K+ SK+ GRE+ +RD  RFH    GKCSCGDYW
Sbjct: 602 KYTSKIYGREVSLRDKNRFHRIVGGKCSCGDYW 634



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 173/364 (47%), Gaps = 45/364 (12%)

Query: 254 NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
           N+ +    L    +H  L+ L    Q     Y +V++ C      R G++VHA++++T  
Sbjct: 34  NIHIHDTRLREALLHMALRGLDTNFQ----DYNTVLNECLRKRAIREGQRVHAHMIKTHY 89

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
            P     + +   L+  Y KC  + +AR +F+ MPER++VSW A++SAY           
Sbjct: 90  LPC----VYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAY----------- 134

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
                               +Q GY  + L LF QM   G +P ++ FA  +TSC G   
Sbjct: 135 --------------------SQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSG 174

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
              GRQ+H+ ++   Y++ +  G++L+ MYA+ G +  A  +F  +P  D VS  A+I+ 
Sbjct: 175 FVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISG 234

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
             Q G    A+EL+ ++ +EG+  + +T+ +VL+A +    +  G++    +     +P 
Sbjct: 235 YAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRS-EVPS 293

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
                   ID+  + G  + A+ + D+L  + +   W A+L G   HG    G +  E L
Sbjct: 294 YVVLQNSLIDMYSKCGNLTYARRIFDTL-HERTVISWNAMLVGYSKHGE---GREVLE-L 348

Query: 614 FQLM 617
           F LM
Sbjct: 349 FNLM 352



 Score =  138 bits (347), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 120/431 (27%), Positives = 189/431 (43%), Gaps = 85/431 (19%)

Query: 79  PDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFR 138
           P +  RT LI  Y   D+++ AR +F+  P   R+ V + AMI+AYS       A+ LF 
Sbjct: 91  PCVYLRTRLIVFYVKCDSLRDARHVFDVMP--ERNVVSWTAMISAYSQRGYASQALSLFV 148

Query: 139 DMRRDDVKPDNFTFTSVLSAL----ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
            M R   +P+ FTF +VL++       ++       Q+H  ++K        V ++L+ +
Sbjct: 149 QMLRSGTEPNEFTFATVLTSCIGSSGFVLGR-----QIHSHIIKLNYEAHVYVGSSLLDM 203

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           Y K            +  AR +F  +PERD +S T +++GY +    + A E    +   
Sbjct: 204 YAK---------DGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQR- 253

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
                  + S YV                TYTSV++A +       GKQVH +LLR+E  
Sbjct: 254 -----EGMQSNYV----------------TYTSVLTALSGLAALDHGKQVHNHLLRSE-- 290

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
             P + + + N+L+ +Y KCG +  AR IF+ + ER ++SWNA+L  Y   G   E   L
Sbjct: 291 -VPSYVV-LQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLEL 348

Query: 375 FEAMRERNLL---SWTVM--ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
           F  M + N +   S TV+  +SG +  G  ++G+ +F  M            +G I+   
Sbjct: 349 FNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMT-----------SGKIS--- 394

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WN 488
                     +     H G          ++ M  R G VEAA      MP   S + W 
Sbjct: 395 ----------VQPDSKHYG---------CVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWG 435

Query: 489 AMIAALGQHGN 499
            ++ A   H N
Sbjct: 436 CLLGACSVHSN 446



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 149/333 (44%), Gaps = 73/333 (21%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R +H+H+I   ++   ++ + L+D+Y K  K+  AR +F  +P+ D+V+ T +I+ Y+
Sbjct: 177 LGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYA 236

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
               + L  E                              A+ELFR ++R+ ++ +  T+
Sbjct: 237 ---QLGLDEE------------------------------ALELFRRLQREGMQSNYVTY 263

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
           TSVL+AL+ +   +    Q+H  +++S    +  + N+LI +Y KC +  +         
Sbjct: 264 TSVLTALSGLAALD-HGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTY--------- 313

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           ARR+FD + ER  +SW  M+ GY K+      RE L                     EL 
Sbjct: 314 ARRIFDTLHERTVISWNAMLVGYSKH---GEGREVL---------------------ELF 349

Query: 273 MLML---RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
            LM+   +++ D  T  +V+S C++ GL   G  +  +   T  K + +        +V 
Sbjct: 350 NLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDI--FYDMTSGKISVQPDSKHYGCVVD 407

Query: 330 LYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
           +  + G+V  A +   +MP E     W  +L A
Sbjct: 408 MLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGA 440


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/608 (37%), Positives = 333/608 (54%), Gaps = 42/608 (6%)

Query: 185 TSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAA 244
           T+  N L++ Y K       S    +  ARR+FD +P  D +S+ T+++ +     +D A
Sbjct: 43  TTTYNCLLAGYAK------ASGLIRLADARRLFDSIPHPDTVSYNTLLSCHFACGDIDGA 96

Query: 245 REFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304
           R     M      +WN ++SG                        ++   + +FR+    
Sbjct: 97  RRVFSTMPVKDVTSWNTMVSGLSKNG-------------------ASEEAAAMFRI---- 133

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSAYV 363
                       P  +    NA+V      G +  A D+F   PE+ D + W A++S Y+
Sbjct: 134 -----------MPVRNAVSWNAMVAALACSGDMGAAEDLFRNAPEKTDAILWTAMVSGYM 182

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF-KPCDYAFA 422
             G + +A   F AM  RNL+SW  +++G  +N   ++ L++F  M  +   +P     +
Sbjct: 183 DTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLS 242

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
             +  C+ L AL  GRQ+H   +      +++ G +L++MY +CG +  A  VF+ M   
Sbjct: 243 SVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTK 302

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
           D V+WNAMI+   QHG G +AI+L+E+M  EG++PD IT L VL+AC H GL   G + F
Sbjct: 303 DIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCF 362

Query: 543 ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
           ETM   Y I P  DHY+  +DLLCRAG    A ++I S+PF+P    +  LL  CR++ N
Sbjct: 363 ETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKN 422

Query: 603 IDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIE 662
           ++    AA +L +  P +AG YV L+N+YA   +W D +RVR+ M+D  V K PG SW+E
Sbjct: 423 LEFAEFAARKLIEQDPQNAGAYVQLANIYAVANKWADVSRVRRWMKDNAVVKTPGYSWME 482

Query: 663 VDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTH 722
           +    H F  +D  HP+   ++  L++L + M+ +GYVPD  F LHD+E   K   L  H
Sbjct: 483 IKGVRHEFRSNDRLHPQLGLIHDKLDRLQMLMKAMGYVPDLDFALHDVEDSLKSQMLMRH 542

Query: 723 SEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDG 782
           SEKLA+AFGL+    G T+R+ KNLRICGDCHNA K +SK+  REI++RD  RFHHFR G
Sbjct: 543 SEKLAIAFGLISTSPGMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGG 602

Query: 783 KCSCGDYW 790
            CSCGDYW
Sbjct: 603 HCSCGDYW 610



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 178/380 (46%), Gaps = 74/380 (19%)

Query: 54  NRLIDIYCKS---LKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLK 110
           N L+  Y K+   ++L  AR LFD IP PD V+  TL++ + A  ++  AR +F+  P+K
Sbjct: 47  NCLLAGYAKASGLIRLADARRLFDSIPHPDTVSYNTLLSCHFACGDIDGARRVFSTMPVK 106

Query: 111 MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM 170
             D   +N M++  S N     A  +FR M   +      ++ ++++ALA          
Sbjct: 107 --DVTSWNTMVSGLSKNGASEEAAAMFRIMPVRNA----VSWNAMVAALAC--------- 151

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER-DELSWT 229
                   SG                             MGAA  +F   PE+ D + WT
Sbjct: 152 --------SGD----------------------------MGAAEDLFRNAPEKTDAILWT 175

Query: 230 TMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLR----------IQ 279
            M++GY+    +  A EF   M     V+WNA+++GYV        LR          +Q
Sbjct: 176 AMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQ 235

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            +  T +SV+  C+N      G+QVH + ++    P    ++ V  +L+++Y KCG +N+
Sbjct: 236 PNASTLSSVLLGCSNLSALGFGRQVHQWCMKL---PLSR-NVTVGTSLLSMYCKCGDLND 291

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL-SWTVMISGLA---Q 395
           A  +F++M  +D+V+WNA++S Y   G   +A  LFE M++  ++  W  +++ L     
Sbjct: 292 ACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIH 351

Query: 396 NGYGEEGLKLFSQMRLEGFK 415
            G  + G++ F  M+ E +K
Sbjct: 352 TGLCDFGIQCFETMQ-EAYK 370


>gi|15237212|ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
 gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g52630
 gi|8953718|dbj|BAA98081.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008860|gb|AED96243.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
          Length = 588

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 240/621 (38%), Positives = 354/621 (57%), Gaps = 67/621 (10%)

Query: 170 MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWT 229
           +Q+H  VVKSG  L   V N LI+ Y K    PF S        RR F++ P++   +W+
Sbjct: 35  LQLHGYVVKSGLSLIPLVANNLINFYSKS-QLPFDS--------RRAFEDSPQKSSTTWS 85

Query: 230 TMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVI 289
           ++++ + +N+    + EFL                       KM+   ++ D+    S  
Sbjct: 86  SIISCFAQNELPWMSLEFLK----------------------KMMAGNLRPDDHVLPSAT 123

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
            +CA      +G+ VH   ++T      +  + V ++LV +Y KCG++  AR +F++MP+
Sbjct: 124 KSCAILSRCDIGRSVHCLSMKT----GYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQ 179

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
           R++V+W+ ++  Y                               AQ G  EE L LF + 
Sbjct: 180 RNVVTWSGMMYGY-------------------------------AQMGENEEALWLFKEA 208

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
             E     DY+F+  I+ CA    LE GRQ+H   + S +DSS   G++L+++Y++CGV 
Sbjct: 209 LFENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVP 268

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           E A  VFN +P  +   WNAM+ A  QH +  + IEL+++M   G+ P+ ITFL VL+AC
Sbjct: 269 EGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNAC 328

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
           +HAGLV EGR YF+ M     I P + HYA  +D+L RAG+  EA +VI ++P  P+  +
Sbjct: 329 SHAGLVDEGRYYFDQMKESR-IEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESV 387

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
           W ALL  C +H N +L   AA+++F+L P  +G ++ LSN YA  GR++DAA+ RKL+RD
Sbjct: 388 WGALLTSCTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRD 447

Query: 650 RGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHD 709
           RG KKE G SW+E  NKVH F   +  H +++ +Y+ L +L  EM K GY+ DT +VL +
Sbjct: 448 RGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLRE 507

Query: 710 MESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIV 769
           ++ D+K   +  HSE+LA+AFGL+  P    +RV+KNLR+CGDCHNA KFMS    R I+
Sbjct: 508 VDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVII 567

Query: 770 VRDGKRFHHFRDGKCSCGDYW 790
           VRD  RFH F DGKCSC DYW
Sbjct: 568 VRDNNRFHRFEDGKCSCNDYW 588



 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 118/490 (24%), Positives = 214/490 (43%), Gaps = 117/490 (23%)

Query: 21  QLCDPRNPITSSLARS------VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFD 74
           Q+CD    ++S+  RS      +H +++ SG      + N LI+ Y KS     +R  F+
Sbjct: 17  QICDLL--LSSARTRSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFE 74

Query: 75  EIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAI 134
           + PQ      +++I+ ++            N+ P                        ++
Sbjct: 75  DSPQKSSTTWSSIISCFAQ-----------NELPW----------------------MSL 101

Query: 135 ELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC---MQMHCTVVKSGTGLFTSVLNAL 191
           E  + M   +++PD+    S   + A++     +C     +HC  +K+G      V ++L
Sbjct: 102 EFLKKMMAGNLRPDDHVLPSATKSCAIL----SRCDIGRSVHCLSMKTGYDADVFVGSSL 157

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           + +Y KC    +         AR++FDEMP+R+ ++W+ MM GY +             M
Sbjct: 158 VDMYAKCGEIVY---------ARKMFDEMPQRNVVTWSGMMYGYAQ-------------M 195

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
            EN    W       + +E   L   + +++++++SVIS CANS L  LG+Q+H   +++
Sbjct: 196 GENEEALW-------LFKE--ALFENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKS 246

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
               +      V ++LV+LY KCG    A  +FN++P ++L  WNA+L AY         
Sbjct: 247 SFDSS----SFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAY--------- 293

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
                                 AQ+ + ++ ++LF +M+L G KP    F   + +C+  
Sbjct: 294 ----------------------AQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHA 331

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS--WNA 489
           G ++ GR    Q+  S  + +     +L+ M  R G ++ A  V   MP +D     W A
Sbjct: 332 GLVDEGRYYFDQMKESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMP-IDPTESVWGA 390

Query: 490 MIAALGQHGN 499
           ++ +   H N
Sbjct: 391 LLTSCTVHKN 400



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 159/362 (43%), Gaps = 82/362 (22%)

Query: 3   MKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCK 62
           ++  D++   A +  + L  CD        + RSVH   + +G+     + + L+D+Y K
Sbjct: 112 LRPDDHVLPSATKSCAILSRCD--------IGRSVHCLSMKTGYDADVFVGSSLVDMYAK 163

Query: 63  SLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
             ++VYAR +FDE+PQ                                 R+ V ++ M+ 
Sbjct: 164 CGEIVYARKMFDEMPQ---------------------------------RNVVTWSGMMY 190

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA--LIVEEEKQCMQMHCTVVKSG 180
            Y+       A+ LF++   +++  ++++F+SV+S  A   ++E  +   Q+H   +KS 
Sbjct: 191 GYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVCANSTLLELGR---QIHGLSIKSS 247

Query: 181 TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY 240
               + V ++L+S+Y KC          +   A +VF+E+P ++   W  M+  Y ++ +
Sbjct: 248 FDSSSFVGSSLVSLYSKC---------GVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSH 298

Query: 241 LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRL 300
                E    M           +SG            ++ +  T+ +V++AC+++GL   
Sbjct: 299 TQKVIELFKRMK----------LSG------------MKPNFITFLNVLNACSHAGLVDE 336

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAIL 359
           G+     +  +  +PT +       +LV +  + G++ EA ++   MP     S W A+L
Sbjct: 337 GRYYFDQMKESRIEPTDKHYA----SLVDMLGRAGRLQEALEVITNMPIDPTESVWGALL 392

Query: 360 SA 361
           ++
Sbjct: 393 TS 394


>gi|296082479|emb|CBI21484.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/629 (36%), Positives = 357/629 (56%), Gaps = 83/629 (13%)

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H  ++K+G  L   ++N L++ Y K            +  A RVFDEMP +   SW  +
Sbjct: 35  IHARIIKAGLHLGVFLMNNLMNFYAKT---------GFIYDAHRVFDEMPVKSVFSWNII 85

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR---ELKMLMLR------IQLDE 282
           ++GY K   L+ A    + M E   V+W A+I GY      E  + M R      +   +
Sbjct: 86  LSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQ 145

Query: 283 FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARD 342
           FT T+V+++CA      +G++VH+++++          + V N+L+ +Y K G    A+ 
Sbjct: 146 FTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSY----ISVANSLLNMYAKSGDPVTAKI 201

Query: 343 IFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG 402
           +F++M  +   ++ A+L  YV  G I+ A+ +F+++R R++++WT MI G  QNG+ ++ 
Sbjct: 202 VFDRMKLKSTSTFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDA 261

Query: 403 LKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITM 462
           ++LF  M  EG KP +Y  A  ++  + L +L++GRQ+HA    SG  SS+S  NALITM
Sbjct: 262 MELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITM 321

Query: 463 YARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           YA+ G +  A  VFN +    D+++W +MI AL QH                        
Sbjct: 322 YAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQH------------------------ 357

Query: 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581
                      GL +E    FE M                            A   I+++
Sbjct: 358 -----------GLGEEALTLFERM-------------------------LENAHAFIENM 381

Query: 582 PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAA 641
           P +P    W +LLA C++H N++L   AAE+L  + P ++G Y  L+N+Y+  G+W++AA
Sbjct: 382 PIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAA 441

Query: 642 RVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVP 701
            +RK M+D+GVKK+ G SW+++ NKVH+F VDD  HP+  A+Y+ + ++  E++K+G+VP
Sbjct: 442 NIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAIYEMMAKIWKEIKKMGFVP 501

Query: 702 DTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMS 761
           DT+ VLHD+E + KE  LS HSEKLA+AFGL+  P   T+R++KNLR+C DCH+A KF+S
Sbjct: 502 DTESVLHDLEEELKEQILSHHSEKLAIAFGLICTPENTTLRIMKNLRVCNDCHSAIKFIS 561

Query: 762 KVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           K+VGREI+VRD  RFHHF++G CSC DYW
Sbjct: 562 KLVGREIIVRDATRFHHFKNGLCSCRDYW 590



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/389 (30%), Positives = 198/389 (50%), Gaps = 46/389 (11%)

Query: 17  ASQLQLCDPRNPITSSLARS-----------VHAHMISSGFKPREHIINRLIDIYCKSLK 65
           +SQ+ L  P +P TS L RS           +HA +I +G      ++N L++ Y K+  
Sbjct: 5   SSQI-LTSPSDPYTSFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGF 63

Query: 66  LVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYS 125
           +  A  +FDE+P   + +   +++ Y+    ++ A  +F + P    D+V + AMI  Y+
Sbjct: 64  IYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEP--DSVSWTAMIVGYN 121

Query: 126 HNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM----QMHCTVVKSGT 181
                  AI +FR+M  DDV P  FT T+VL++ A +     +C+    ++H  VVK G 
Sbjct: 122 QMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAV-----ECLGIGRKVHSFVVKHGL 176

Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
             + SV N+L+++Y K    P          A+ VFD M  +   ++T ++ GYVK   +
Sbjct: 177 SSYISVANSLLNMYAKS-GDPVT--------AKIVFDRMKLKSTSTFTALLDGYVKLGDI 227

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHRELK---MLMLRIQLDE------FTYTSVISAC 292
           + AR   D +     VAW A+I GYV        M + R  + E      +T  +++S  
Sbjct: 228 NPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVS 287

Query: 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERD 351
           ++      G+Q+HA   R+        S+ V+NAL+T+Y K G +N+AR +FN +  +RD
Sbjct: 288 SSLASLDHGRQIHASATRSGNAS----SVSVSNALITMYAKSGSINDARWVFNLIHWKRD 343

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
            ++W +++ A    GL +EA +LFE M E
Sbjct: 344 TITWTSMIIALAQHGLGEEALTLFERMLE 372



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 162/356 (45%), Gaps = 41/356 (11%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           + R VH+ ++  G      + N L+++Y KS   V A+ +FD +        T L+  Y 
Sbjct: 163 IGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSTFTALLDGYV 222

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
              ++  AR +F+   L++RD V + AMI  Y  N     A+ELFR M ++  KP+N+T 
Sbjct: 223 KLGDINPARRIFDS--LRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTL 280

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            ++LS  + +   +    Q+H +  +SG     SV NALI++Y K  S         +  
Sbjct: 281 ATMLSVSSSLASLD-HGRQIHASATRSGNASSVSVSNALITMYAKSGS---------IND 330

Query: 213 ARRVFDEMP-ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
           AR VF+ +  +RD ++WT+M+    ++   + A    + M EN     +A I        
Sbjct: 331 ARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENA----HAFIEN------ 380

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
               + I+ D   + S++++C       L +     LL  E + +  +S     AL  +Y
Sbjct: 381 ----MPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYS-----ALANVY 431

Query: 332 WKCGKVNEARDIFNQMPERDL-----VSW----NAILSAYVSAGLIDEAKSLFEAM 378
             CG+   A +I   M ++ +      SW    N +    V  GL  +  +++E M
Sbjct: 432 SACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAIYEMM 487



 Score = 66.6 bits (161), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 37/201 (18%)

Query: 437 GRQLHAQLVHSG---------------------YDS----------SLSAGNALITMYAR 465
           G+ +HA+++ +G                     YD+          S+ + N +++ YA+
Sbjct: 32  GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91

Query: 466 CGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTV 525
            G +E A+ VF  MP  DSVSW AMI    Q G    AI ++ +M+ + + P + T   V
Sbjct: 92  GGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNV 151

Query: 526 LSACNHAGLVKEGRRY--FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF 583
           L++C     +  GR+   F   HG        +     +++  ++G    AK V D +  
Sbjct: 152 LASCAAVECLGIGRKVHSFVVKHGLSSYISVAN---SLLNMYAKSGDPVTAKIVFDRMKL 208

Query: 584 KPSAPIWEALLAGCRIHGNID 604
           K S   + ALL G    G+I+
Sbjct: 209 K-STSTFTALLDGYVKLGDIN 228


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/603 (37%), Positives = 358/603 (59%), Gaps = 42/603 (6%)

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK-NDYLDAAREFLDGMSENVGVAWNAL 262
           VS    +  AR++F  M   +  S+ T++    + ND  DA   F++ M E+  V  N  
Sbjct: 55  VSDHRDLDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIE-MVEDCSVEPNC- 112

Query: 263 ISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
                               FT+ SV  AC  +   R G+QVH   ++     + EF   
Sbjct: 113 --------------------FTFPSVFKACGRAERLREGRQVHGLAVKF-GLDSDEF--- 148

Query: 323 VNNALVTLYWKCGKVNEARDIF---------------NQMPERDLVSWNAILSAYVSAGL 367
           V + +V +Y  CG + +A  +F                +  + D+V WN ++  YV  G 
Sbjct: 149 VVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGE 208

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
           ++ A++LF+ M +R+++SW VMI+G AQ+G+ +E +++F +M++    P        + +
Sbjct: 209 LEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPA 268

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
            + LGALE G+ +H   V +        G+ALI MYA+CG +E A  VF  +P  + V+W
Sbjct: 269 MSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTW 328

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
           + +IA L  HG     ++ +E M + G++P  +T++ +LSAC+HAGLV EGR +F+ M  
Sbjct: 329 STIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVR 388

Query: 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
             G+ P  +HY   +DLL RAG   E++++I ++P KP   IW+ALL  C++HGN+++G 
Sbjct: 389 VSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGK 448

Query: 608 QAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKV 667
           + AE L +L PH +G+YV LSN+YA+LG W+  A+VR +M++  V+K+PGCSWIE+D  +
Sbjct: 449 RVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWIELDGVI 508

Query: 668 HVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLA 727
           H FLV+D +HP+++ ++  L+++   +  +GY P+T  VL +M+ + KE +L+ HSEK+A
Sbjct: 509 HEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYRPNTTQVLTNMDEEDKESSLNYHSEKIA 568

Query: 728 VAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCG 787
           +AFGL+       +R+ KNLRIC DCH++ K +SK+  R+I+VRD KRFHHF +G CSC 
Sbjct: 569 IAFGLISTQPQTPLRITKNLRICEDCHSSIKLISKIYKRKIIVRDRKRFHHFVNGSCSCM 628

Query: 788 DYW 790
           DYW
Sbjct: 629 DYW 631



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 163/364 (44%), Gaps = 55/364 (15%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIY--CKSL----KLVYARTLFDEIP---------Q 78
            R VH   +  G    E +++ ++ +Y  C  +    +L Y R   D             
Sbjct: 131 GRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVD 190

Query: 79  PDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFR 138
            D+V    +I  Y     +++AR +F++ P   R  V +N MI  Y+ + +   A+E+FR
Sbjct: 191 GDVVLWNVMIDGYVRIGELEVARNLFDEMP--QRSVVSWNVMIAGYAQSGHFKEAVEVFR 248

Query: 139 DMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
           +M+  +V P+  T  SVL A++ +   E     +H   V++  G+   + +ALI +Y KC
Sbjct: 249 EMQMAEVPPNYVTLVSVLPAMSRLGALELG-KWVHLYAVRNNIGVDDVLGSALIDMYAKC 307

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
            S         +  A +VF+ +P+R+ ++W+T++ G   +     A++ LD   +     
Sbjct: 308 GS---------IEKALQVFEGLPKRNVVTWSTIIAGLAMH---GRAKDTLDHFED----- 350

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTP 317
                         M    +   + TY  ++SAC+++GL   G+    +++R    +P  
Sbjct: 351 --------------MERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRI 396

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSAYVSAGLIDEAKSLFE 376
           E        +V L  + G + E+ ++   MP + D V W A+L A    G ++  K + E
Sbjct: 397 EHY----GCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAE 452

Query: 377 AMRE 380
            + E
Sbjct: 453 HLME 456


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/622 (37%), Positives = 344/622 (55%), Gaps = 71/622 (11%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           Q+H  VV +GT     + N L+  Y         +    +  A  +FD +  RD  +W+ 
Sbjct: 21  QVHAHVVANGTLQDLVIANKLLYTY---------AQHKAIDDAYSLFDGLTMRDSKTWSV 71

Query: 231 MMTGYVK-NDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVI 289
           M+ G+ K  D+      F                     REL  L   +  D +T   VI
Sbjct: 72  MVGGFAKAGDHAGCYATF---------------------REL--LRCGVTPDNYTLPFVI 108

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
             C +    ++G+ +H  +L+              + L++ ++ C               
Sbjct: 109 RTCRDRTDLQIGRVIHDVVLK--------------HGLLSDHFVCA-------------- 140

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQ-NGYGEEGLKLFSQ 408
                  +++  Y    ++++A+ LFE M  ++L++WTVMI   A  N Y  E L LF +
Sbjct: 141 -------SLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAY--ESLVLFDR 191

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
           MR EG  P   A    + +CA LGA+   R  +  +V +G+   +  G A+I MYA+CG 
Sbjct: 192 MREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGS 251

Query: 469 VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
           VE+A  VF+ M   + +SW+AMIAA G HG G  AI+L+  ML   ILP+R+TF+++L A
Sbjct: 252 VESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYA 311

Query: 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
           C+HAGL++EG R+F +M   + + P   HY   +DLL RAG+  EA  +I+++  +    
Sbjct: 312 CSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDER 371

Query: 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648
           +W ALL  CRIH  ++L  +AA  L +L P + G YVLLSN+YA  G+W+  A+ R +M 
Sbjct: 372 LWSALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMT 431

Query: 649 DRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLH 708
            R +KK PG +WIEVDNK + F V D +HP+++ +Y+ L  L+ ++   GYVPDT FVL 
Sbjct: 432 QRKLKKIPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGYVPDTDFVLQ 491

Query: 709 DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREI 768
           D+E + K+  L THSEKLA+AFGL+ +P G  +R+ KNLR+CGDCH   K +S ++ R I
Sbjct: 492 DVEEEVKQEMLYTHSEKLAIAFGLIAIPEGEPIRISKNLRVCGDCHTFSKMVSSIMRRSI 551

Query: 769 VVRDGKRFHHFRDGKCSCGDYW 790
           +VRD  RFHHF DG CSCGDYW
Sbjct: 552 IVRDANRFHHFNDGTCSCGDYW 573



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 166/385 (43%), Gaps = 86/385 (22%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           R VHAH++++G      I N+L+  Y +   +  A +LFD                    
Sbjct: 20  RQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFD-------------------- 59

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
                         L MRD+  ++ M+  ++   +       FR++ R  V PDN+T   
Sbjct: 60  -------------GLTMRDSKTWSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPF 106

Query: 155 VLSALALIVEEEKQCMQ----MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           V+         ++  +Q    +H  V+K G      V  +L+ +Y KC+         ++
Sbjct: 107 VIRTC-----RDRTDLQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCI---------VV 152

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
             A+R+F+ M  +D ++WT M+  Y   +  ++   F D M E   V             
Sbjct: 153 EDAQRLFERMLSKDLVTWTVMIGAYADCNAYESLVLF-DRMREEGVVP------------ 199

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV--NNALV 328
                     D+    +V++ACA  G     +  + Y++R        FSL V    A++
Sbjct: 200 ----------DKVAMVTVVNACAKLGAMHRARFANDYIVRN------GFSLDVILGTAMI 243

Query: 329 TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE----RNLL 384
            +Y KCG V  AR++F++M E++++SW+A+++AY   G   +A  LF  M       N +
Sbjct: 244 DMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRV 303

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQM 409
           ++  ++   +  G  EEGL+ F+ M
Sbjct: 304 TFVSLLYACSHAGLIEEGLRFFNSM 328



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 51/102 (50%)

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           RQ+HA +V +G    L   N L+  YA+   ++ A  +F+ +   DS +W+ M+    + 
Sbjct: 20  RQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKA 79

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
           G+ A     + ++L+ G+ PD  T   V+  C     ++ GR
Sbjct: 80  GDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGR 121



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 18/157 (11%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D++  T +I  Y+   +V+ ARE+F++  +K ++ + ++AMI AY ++  G  AI+LF  
Sbjct: 235 DVILGTAMIDMYAKCGSVESAREVFDR--MKEKNVISWSAMIAAYGYHGRGKDAIDLFHM 292

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNA-LISVYVK- 197
           M    + P+  TF S+L A +            H  +++ G   F S+     +   VK 
Sbjct: 293 MLSCAILPNRVTFVSLLYACS------------HAGLIEEGLRFFNSMWEEHAVRPDVKH 340

Query: 198 --CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMM 232
             C+      +  L  A R +     E+DE  W+ ++
Sbjct: 341 YTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALL 377



 Score = 42.0 bits (97), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 74/162 (45%), Gaps = 7/162 (4%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS- 92
           AR  + +++ +GF     +   +ID+Y K   +  AR +FD + + ++++ + +IAAY  
Sbjct: 220 ARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGY 279

Query: 93  ---ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD-VKPD 148
                D + L   M +   L  R  V + +++ A SH       +  F  M  +  V+PD
Sbjct: 280 HGRGKDAIDLFHMMLSCAILPNR--VTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPD 337

Query: 149 NFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNA 190
              +T ++  L      ++    +    V+    L++++L A
Sbjct: 338 VKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGA 379


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 248/706 (35%), Positives = 368/706 (52%), Gaps = 69/706 (9%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           ++LI AYS    V  AR +F+    K  D V + AM++ YS N     A+  F  MR   
Sbjct: 189 SSLIDAYSLCGAVSHARCVFDGIIWK--DAVTWTAMVSCYSENDIPEDALNTFSKMRMAG 246

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
            KP+ F  TSVL A A+ +        +H   VK+       V  AL+ +Y KC      
Sbjct: 247 AKPNPFVLTSVLKA-AVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKC------ 299

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                +  AR VF+ +P  D + W+ +++ Y ++   + A E                  
Sbjct: 300 ---GYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMF---------------- 340

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
                 L+M+   +  +EF+ + V+ ACAN     LG+Q+H  ++    K   E  L V 
Sbjct: 341 ------LRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVI----KLGYESELFVG 390

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
           NAL+ +Y KC      R++ N +                          +F ++R+ N +
Sbjct: 391 NALMDVYAKC------RNMENSL-------------------------EIFRSLRDANEV 419

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
           SW  +I G  Q+G+ E+ L +F +MR          F+  + +CA   ++++  Q+H+ +
Sbjct: 420 SWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLI 479

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
             S +++     N+LI  YA+CG +  A  VF ++   D VSWNA+I+    HG    A+
Sbjct: 480 EKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDAL 539

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
           EL+ +M K    P+ +TF+ +LS C   GLV +G   F +M   + I P  DHY   + L
Sbjct: 540 ELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRL 599

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624
           L RAG+ ++A   I  +P  PS  +W ALL+ C +H N+ LG  +AE++ ++ P    TY
Sbjct: 600 LGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTY 659

Query: 625 VLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVY 684
           VLLSNMYA  G  D  A +RK MR+ GVKKE G SW+E+  +VH F V    HP+ + + 
Sbjct: 660 VLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADHPDMRIIN 719

Query: 685 KYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVL 744
             LE L L+  + GYVPD   VLHD++ ++K   L  HSE+LA+A+GL   P G  +R++
Sbjct: 720 AMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPGHPIRIM 779

Query: 745 KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KNLR C DCH  FK +SK+V REIVVRD  RFHHF +G CSCGDYW
Sbjct: 780 KNLRSCLDCHTVFKVISKIVQREIVVRDINRFHHFDEGICSCGDYW 825



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 168/372 (45%), Gaps = 70/372 (18%)

Query: 172 MHCTVVKSG--TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWT 229
           +H  VV+ G    L T   N L+++Y K    P       + AARR+FD MPER+ +S+ 
Sbjct: 69  VHARVVQRGGVAQLDTFCANVLLNLYAKL--GP-------LAAARRLFDGMPERNMVSFV 119

Query: 230 TMMTGY-VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSV 288
           T++ GY ++  + +AA  F     E   V    L +        +L + + +D    T  
Sbjct: 120 TLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTT--------ILKVLVAMDAPGLTCC 171

Query: 289 ISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
           I ACA     +LG   +A+               V ++L+  Y  CG V+ AR +F+ + 
Sbjct: 172 IHACA----CKLGHDRNAF---------------VGSSLIDAYSLCGAVSHARCVFDGII 212

Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQ 408
            +D V+W A++S Y                               ++N   E+ L  FS+
Sbjct: 213 WKDAVTWTAMVSCY-------------------------------SENDIPEDALNTFSK 241

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
           MR+ G KP  +     + +   L +   G+ +H   V +  D+    G AL+ MYA+CG 
Sbjct: 242 MRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGY 301

Query: 469 VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
           +E A  VF  +P+ D + W+ +I+   Q     +A E++ +M++  ++P+  +   VL A
Sbjct: 302 IEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQA 361

Query: 529 CNHAGLVKEGRR 540
           C +   +  G++
Sbjct: 362 CANVAFLDLGQQ 373



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 167/387 (43%), Gaps = 73/387 (18%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           ++ L + +H   + +      H+   L+D+Y K   +  ART+F+ IP  D++  + LI+
Sbjct: 266 SAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLIS 325

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
            Y+ S                                      A E+F  M R  V P+ 
Sbjct: 326 RYAQS---------------------------------YQNEQAFEMFLRMMRSSVVPNE 352

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           F+ + VL A A +   +    Q+H  V+K G      V NAL+ VY KC +         
Sbjct: 353 FSLSGVLQACANVAFLDLG-QQIHNLVIKLGYESELFVGNALMDVYAKCRN--------- 402

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           M  +  +F  + + +E+SW T++ GY ++ + + A      M                 R
Sbjct: 403 MENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEM-----------------R 445

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
              +L  ++     T++SV+ ACAN+   +   Q+H+ +     K T      V N+L+ 
Sbjct: 446 AAHVLSTQV-----TFSSVLRACANTASIKHTVQIHSLI----EKSTFNNDTIVCNSLID 496

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER----NLLS 385
            Y KCG + +A  +F  + + D+VSWNAI+S Y   G   +A  LF  M +     N ++
Sbjct: 497 TYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVT 556

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLE 412
           +  ++S     G   +GL LF+ M ++
Sbjct: 557 FVALLSVCGSTGLVNQGLSLFNSMTMD 583



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 145/336 (43%), Gaps = 48/336 (14%)

Query: 266 YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
           ++  EL  L L  +LD +    ++  C   G  R G+ VHA +++       +      N
Sbjct: 32  WLDDELASLALP-KLDSYACARLLQRCIARGDARAGRAVHARVVQRGG--VAQLDTFCAN 88

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM-RERNLL 384
            L+ LY K G +  AR +F+ MPER++VS+  ++  Y   G  +EA  LF  + RE + +
Sbjct: 89  VLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEV 148

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
           +  V+ +           LK+   M   G   C                      +HA  
Sbjct: 149 NHFVLTT----------ILKVLVAMDAPGLTCC----------------------IHACA 176

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
              G+D +   G++LI  Y+ CG V  A CVF+ +   D+V+W AM++   ++     A+
Sbjct: 177 CKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDAL 236

Query: 505 ELYEQMLKEGILPDRITFLTVLSA--CNHAGLVKEGRRYFETMHG--PYGIPPGEDHY-A 559
             + +M   G  P+     +VL A  C  + ++ +G      +HG     +   E H   
Sbjct: 237 NTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKG------IHGCAVKTLCDTEPHVGG 290

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
             +D+  + G   +A+ V + +P      +W  L++
Sbjct: 291 ALLDMYAKCGYIEDARTVFEIIPHD-DVILWSFLIS 325



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 142/351 (40%), Gaps = 79/351 (22%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + ++     L+  Y+   N++ + E+F    L+  + V +N +I  Y  +     A+ +F
Sbjct: 384 ESELFVGNALMDVYAKCRNMENSLEIFRS--LRDANEVSWNTIIVGYCQSGFAEDALSVF 441

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           ++MR   V     TF+SVL A A      K  +Q+H  + KS     T V N+LI  Y K
Sbjct: 442 QEMRAAHVLSTQVTFSSVLRACA-NTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAK 500

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C           +  A +VF+ + + D +SW  +++GY  +     A E  + M+++   
Sbjct: 501 C---------GCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKS--- 548

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV-HAYLLRTEAKPT 316
                                + ++ T+ +++S C ++GL   G  + ++  +    KP 
Sbjct: 549 -------------------DTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKP- 588

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA-------------- 361
              S+     +V L  + G++N+A      +P     + W A+LS+              
Sbjct: 589 ---SMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSA 645

Query: 362 --------------------YVSAGLIDEAKSLFEAMRERNL-----LSWT 387
                               Y +AG++D+   L ++MR   +     LSW 
Sbjct: 646 EKVLEIEPQDETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWV 696



 Score = 45.1 bits (105), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 7/149 (4%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           ++S L+ C     I  ++   +H+ +  S F     + N LID Y K   +  A  +F+ 
Sbjct: 456 FSSVLRACANTASIKHTV--QIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFES 513

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMF---NKTPLKMRDTVFYNAMITAYSHNSNGHA 132
           I Q D+V+   +I+ Y+       A E+F   NK+  K  D  F  A+++        + 
Sbjct: 514 IIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFV-ALLSVCGSTGLVNQ 572

Query: 133 AIELFRDMRRDD-VKPDNFTFTSVLSALA 160
            + LF  M  D  +KP    +T ++  L 
Sbjct: 573 GLSLFNSMTMDHRIKPSMDHYTCIVRLLG 601


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/624 (37%), Positives = 343/624 (54%), Gaps = 68/624 (10%)

Query: 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS 227
           Q  Q+H  V  +G      V N L+ +  K         + L+  A  +F++M ERD +S
Sbjct: 18  QIKQVHAQVTTTGIIHDLIVANKLLYMCAK--------HKDLV-TAHLLFNKMEERDPVS 68

Query: 228 WTTMMTGYVKN-DYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYT 286
           W+ M+ G+VKN DY    + F                     REL  +    + D F+  
Sbjct: 69  WSVMIGGFVKNGDYERCFQTF---------------------REL--IRAGSKPDNFSLP 105

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
            VI AC ++    +G+ +H+ +L    K        V + LV +Y KCG           
Sbjct: 106 FVIKACRDTMGLIMGRLIHSTVL----KNGLHLDNFVCSTLVDMYAKCG----------- 150

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
                               +ID AK LF+ M +++L++ TVMI+G A+ G   E   LF
Sbjct: 151 --------------------MIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLF 190

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
            QMR +GF P   A    + +CA LGA+   R +H  +    Y   +  G A+I MYA+C
Sbjct: 191 DQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKC 250

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G ++++  +F+ M   + +SW+AMI A G HG G  A+EL+  ML  GI+P+RITF+++L
Sbjct: 251 GSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLL 310

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
            AC+HAGLV +G + F  M   YG+ P   HY   +DLL RAG+  +A  +I+++  +  
Sbjct: 311 YACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKD 370

Query: 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKL 646
             IW A L  CRIH  +DL  +AA+ L  L   + G Y+LLSN+YAN GRW D A++R L
Sbjct: 371 EGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRNL 430

Query: 647 MRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFV 706
           M  R +KK PG +WIEVDN ++ F   D +H  +  +Y+ L+ L  ++   GYVPDT  V
Sbjct: 431 MAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLESAGYVPDTNSV 490

Query: 707 LHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGR 766
           LHD++ + K   L  HSEKLA+AFGL+  P G  +R+ KNLR+CGDCH+  K +S +  R
Sbjct: 491 LHDVDEEVKLGILHAHSEKLAIAFGLIATPDGTPIRITKNLRVCGDCHSFCKLVSAITQR 550

Query: 767 EIVVRDGKRFHHFRDGKCSCGDYW 790
           +I+VRD  RFHHF++G CSCGDYW
Sbjct: 551 DIIVRDANRFHHFKEGICSCGDYW 574



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 112/458 (24%), Positives = 198/458 (43%), Gaps = 88/458 (19%)

Query: 63  SLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
            +K V+A+     I    IVA   L       D V  A  +FNK  ++ RD V ++ MI 
Sbjct: 18  QIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVT-AHLLFNK--MEERDPVSWSVMIG 74

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA----LALIVEEEKQCMQMHCTVVK 178
            +  N +     + FR++ R   KPDNF+   V+ A    + LI+        +H TV+K
Sbjct: 75  GFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGR-----LIHSTVLK 129

Query: 179 SGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKN 238
           +G  L   V + L+ +Y KC          ++  A+++FD MP++D ++ T M+ GY + 
Sbjct: 130 NGLHLDNFVCSTLVDMYAKC---------GMIDNAKQLFDRMPKKDLVTRTVMIAGYAEC 180

Query: 239 DYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLF 298
              + +    D M  +          G+V  ++ M+            ++++ACA  G  
Sbjct: 181 GKPNESWVLFDQMRRD----------GFVPDKVAMV------------TIVNACAKLGAM 218

Query: 299 RLGKQVHAYLLRTEAKPTPEFSLPV--NNALVTLYWKCGKVNEARDIFNQMPERDLVSWN 356
              + VH Y+          +SL V    A++ +Y KCG ++ +R+IF++M +++++SW+
Sbjct: 219 NKARLVHDYVC------ARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWS 272

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
           A++ AY                                 +G G E L+LF  M   G  P
Sbjct: 273 AMIGAY-------------------------------GYHGQGREALELFHMMLNSGIIP 301

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQL-VHSGYDSSLSAGNALITMYARCGVVEAA-NC 474
               F   + +C+  G +++G QL + + V  G    +     ++ +  R G ++ A   
Sbjct: 302 NRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRL 361

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           + N     D   W A + A   H    R ++L E+  K
Sbjct: 362 IENMEVEKDEGIWCAFLGACRIH----RQVDLAEKAAK 395



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 156/334 (46%), Gaps = 23/334 (6%)

Query: 327 LVTLYWKCGKVNEARDIFNQMPE----RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
            ++  +KC  + + + +  Q+       DL+  N +L        +  A  LF  M ER+
Sbjct: 6   FISTLFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERD 65

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
            +SW+VMI G  +NG  E   + F ++   G KP +++    I +C     L  GR +H+
Sbjct: 66  PVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHS 125

Query: 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
            ++ +G        + L+ MYA+CG+++ A  +F+ MP  D V+   MIA   + G    
Sbjct: 126 TVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNE 185

Query: 503 AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR---RYFETMHGPYGIPPGEDHYA 559
           +  L++QM ++G +PD++  +T+++AC   G + + R    Y         +  G     
Sbjct: 186 SWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELG----T 241

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM-- 617
             ID+  + G    ++++ D +  K +   W A++     HG    G +A E LF +M  
Sbjct: 242 AMIDMYAKCGSIDSSREIFDRMEQK-NVISWSAMIGAYGYHGQ---GREALE-LFHMMLN 296

Query: 618 ----PHHAGTYVLLSNMYANLGRWDDAARVRKLM 647
               P+   T++ L    ++ G  DD  ++  LM
Sbjct: 297 SGIIPNRI-TFISLLYACSHAGLVDDGLQLFSLM 329



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 152/363 (41%), Gaps = 76/363 (20%)

Query: 26  RNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVART 85
           R+ +   + R +H+ ++ +G      + + L+D+Y K   +  A+ LFD +P+ D+V RT
Sbjct: 112 RDTMGLIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRT 171

Query: 86  TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
            +IA Y+                                      + +  LF  MRRD  
Sbjct: 172 VMIAGYAEC---------------------------------GKPNESWVLFDQMRRDGF 198

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVS 205
            PD     ++++A A +    K  + +H  V      L   +  A+I +Y KC S     
Sbjct: 199 VPDKVAMVTIVNACAKLGAMNKARL-VHDYVCARRYSLDVELGTAMIDMYAKCGS----- 252

Query: 206 SRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD--GMSENVGVAWNALI 263
               + ++R +FD M +++ +SW+ M+  Y    Y    RE L+   M  N G+  N + 
Sbjct: 253 ----IDSSREIFDRMEQKNVISWSAMIGAY---GYHGQGREALELFHMMLNSGIIPNRI- 304

Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
                               T+ S++ AC+++GL   G Q+ + L+       P+  +  
Sbjct: 305 --------------------TFISLLYACSHAGLVDDGLQLFS-LMSVSYGVRPD--VKH 341

Query: 324 NNALVTLYWKCGKVNEA-RDIFNQMPERDLVSWNAILSA---YVSAGLIDEAKSLFEAMR 379
              +V L  + G++++A R I N   E+D   W A L A   +    L ++A  L  +++
Sbjct: 342 YTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQ 401

Query: 380 ERN 382
            +N
Sbjct: 402 TQN 404



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 100/230 (43%), Gaps = 28/230 (12%)

Query: 40  HMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP----QPDIVARTTLIAAYSASD 95
            M   GF P +  +  +++   K   +  AR + D +       D+   T +I  Y+   
Sbjct: 192 QMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCG 251

Query: 96  NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV 155
           ++  +RE+F++  ++ ++ + ++AMI AY ++  G  A+ELF  M    + P+  TF S+
Sbjct: 252 SIDSSREIFDR--MEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISL 309

Query: 156 LSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV-----YVKCVSSPFVSSRSLM 210
           L A +            H  +V  G  LF S+++    V     +  C+      +  L 
Sbjct: 310 LYACS------------HAGLVDDGLQLF-SLMSVSYGVRPDVKHYTCMVDLLGRAGRLD 356

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLD----AAREFLDGMSENVG 256
            A R + +   E+DE  W   +     +  +D    AA+  L   ++N G
Sbjct: 357 QALRLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPG 406


>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
          Length = 587

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/652 (36%), Positives = 351/652 (53%), Gaps = 66/652 (10%)

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M R  ++P++FTF S   A A          Q+H   ++ G           +  +V C 
Sbjct: 1   MLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGY--------LPVDPFVSCA 52

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
           +         +  AR +F EMP R+ ++W  +MT  V +       E   G+ E  G+  
Sbjct: 53  ALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLP- 111

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                                +  +  +  +ACA +    LG+Q H ++++       E 
Sbjct: 112 ---------------------NVVSACAFFNACAGAMYLSLGEQFHGFVVKCGF----EM 146

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
            + V N++V  Y KC    +AR                               ++F+ M 
Sbjct: 147 DVSVLNSMVDFYGKCRCAGKAR-------------------------------AVFDGMG 175

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
            RN +SW  M++  AQNG  EE    +   R  G +P D+  + A+T+CAGL  L  GR 
Sbjct: 176 VRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRA 235

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           LHA  V S  D+++   +AL+ MY +CG VE A  +F   P  + V+WNAMI      G+
Sbjct: 236 LHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGD 295

Query: 500 GARAIELYEQMLKEG-ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
              A+ +++ M++ G   P+ IT + V+++C+  GL K+G   FETM   +GI P  +HY
Sbjct: 296 AQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHY 355

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
           A  +DLL RAG   +A +VI  +P +PS  +W ALL  C++HG  +LG  AAE+LF+L P
Sbjct: 356 ACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDP 415

Query: 619 HHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHP 678
             +G +VLLSNM+A+ GRW +A  +RK M++ G+KK+PGCSW+   N VHVF   DT H 
Sbjct: 416 QDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGCSWVTWKNVVHVFRAKDTKHE 475

Query: 679 EAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGG 738
               +   L +L  +M+  GY+PDT++ L+D+E ++KE  +  HSEKLA+AFGL+ +P G
Sbjct: 476 MYNEIQALLSKLRKQMQAAGYMPDTQYSLYDLEEEEKESEVFQHSEKLALAFGLICIPPG 535

Query: 739 ATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             +R++KNLRIC DCH AFKF+S +VGREI+VRD  RFHHF+  +CSCGDYW
Sbjct: 536 VPIRIMKNLRICVDCHRAFKFISGIVGREIIVRDNNRFHHFKQYQCSCGDYW 587



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 178/420 (42%), Gaps = 90/420 (21%)

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
           Y  +  +KLAR +F + P   R+ V +NA++T    +      IE +  +R     P+  
Sbjct: 57  YFKTGRLKLARHLFGEMP--NRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVV 114

Query: 151 T----FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           +    F +   A+ L + E     Q H  VVK G  +  SVLN+++  Y KC  +     
Sbjct: 115 SACAFFNACAGAMYLSLGE-----QFHGFVVKCGFEMDVSVLNSMVDFYGKCRCA----- 164

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW-NALISG 265
               G AR VFD M  R+ +SW +M+  Y +N           G  E    A+  A  SG
Sbjct: 165 ----GKARAVFDGMGVRNSVSWCSMVAAYAQN-----------GAEEEAFAAYLGARRSG 209

Query: 266 YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
                        +  +F  +S ++ CA      LG+ +HA  +R+      + ++ V +
Sbjct: 210 E------------EPTDFMVSSALTTCAGLLGLHLGRALHAVAVRS----CIDANIFVAS 253

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM-----RE 380
           ALV +Y KCG V +A  IF + P+R+LV+WNA++  Y   G    A  +F+ M       
Sbjct: 254 ALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETA 313

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSCAGLGALENGRQ 439
            N ++   +I+  ++ G  ++G +LF  MR   G +P                     R 
Sbjct: 314 PNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEP---------------------RT 352

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHG 498
            H   V              + +  R G+ E A  V   MP   S+S W A++ A   HG
Sbjct: 353 EHYACV--------------VDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHG 398


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 254/718 (35%), Positives = 378/718 (52%), Gaps = 92/718 (12%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
            TL+  Y+ +     A  +F + P K  D + +N+++ ++ ++     A+ L   M    
Sbjct: 300 NTLLRMYAGAGRSVEANLVFKQMPTK--DLISWNSLMASFVNDGRSLDALGLLCSMISSG 357

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
              +  TFTS L+A       EK  + +H  VV SG      + NAL+S+Y K       
Sbjct: 358 KSVNYVTFTSALAACFTPDFFEKGRI-LHGLVVVSGLFYNQIIGNALVSMYGKI------ 410

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                M  +RRV  +MP RD                                VAWNALI 
Sbjct: 411 ---GEMSESRRVLLQMPRRDV-------------------------------VAWNALIG 436

Query: 265 GYVHRE---------LKMLMLRIQLDEFTYTSVISACANSG-LFRLGKQVHAYLLRTEAK 314
           GY   E           M +  +  +  T  SV+SAC   G L   GK +HAY++    +
Sbjct: 437 GYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFE 496

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
                   V N+L+T+Y KCG ++ ++D+FN +  R++++WNA+L+A             
Sbjct: 497 SDEH----VKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAAN------------ 540

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
                              A +G+GEE LKL S+MR  G     ++F+  +++ A L  L
Sbjct: 541 -------------------AHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVL 581

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV--SWNAMIA 492
           E G+QLH   V  G++      NA   MY++CG  E    V    P+V+    SWN +I+
Sbjct: 582 EEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCG--EIGEVVKMLPPSVNRSLPSWNILIS 639

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552
           ALG+HG        + +ML+ GI P  +TF+++L+AC+H GLV +G  Y++ +   +G+ 
Sbjct: 640 ALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLE 699

Query: 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
           P  +H    IDLL R+G+ +EA+  I  +P KP+  +W +LLA C+IHGN+D G +AAE 
Sbjct: 700 PAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAEN 759

Query: 613 LFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLV 672
           L +L P     YVL SNM+A  GRW+D   VRK M  + +KK+  CSW+++ +KV  F +
Sbjct: 760 LSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGI 819

Query: 673 DDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGL 732
            D  HP+   +Y  LE +   +++ GYV DT   L D + +QKE+ L  HSE+LA+A+ L
Sbjct: 820 GDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYAL 879

Query: 733 MKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           M  P G+TVR+ KNLRIC DCH+ +KF+S+V+GR IV+RD  RFHHF  G CSC DYW
Sbjct: 880 MSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 937



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 156/654 (23%), Positives = 278/654 (42%), Gaps = 150/654 (22%)

Query: 41  MISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ-----------PDIVARTTLIA 89
           M   G KP   +I  L+    +S       ++F E  Q            D+   T ++ 
Sbjct: 49  MCDLGIKPSSFVIASLVTACGRS------GSMFREGVQVHGFVAKSGLLSDVYVSTAILH 102

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
            Y     V  +R++F + P   R+ V + +++  YS        I++++ MR + V  + 
Sbjct: 103 LYGVYGLVSCSRKVFEEMP--DRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNE 160

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
            + + V+S+  L+ ++E    Q+   VVKSG     +V N+LIS+         + S   
Sbjct: 161 NSMSLVISSCGLL-KDESLGRQIIGQVVKSGLESKLAVENSLISM---------LGSMGN 210

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +  A  +FD+M ERD +SW ++   Y +N +++ +                         
Sbjct: 211 VDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFS-------------------- 250

Query: 270 ELKMLMLRI--QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327
               LM R   +++  T ++++S   +    + G+ +H  +++          + V N L
Sbjct: 251 ----LMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSV----VCVCNTL 302

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG-----------LIDEAKSL-- 374
           + +Y   G+  EA  +F QMP +DL+SWN++++++V+ G           +I   KS+  
Sbjct: 303 LRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNY 362

Query: 375 ---------------FEAMRERNLLSWTVMISGLAQN----------------------- 396
                          FE  R   +L   V++SGL  N                       
Sbjct: 363 VTFTSALAACFTPDFFEKGR---ILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRV 419

Query: 397 -----------------GYGEE-----GLKLFSQMRLEGFKPCDYAFAGAITSCAGLG-A 433
                            GY E+      L  F  MR+EG           +++C   G  
Sbjct: 420 LLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDL 479

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
           LE G+ LHA +V +G++S     N+LITMYA+CG + ++  +FN + N + ++WNAM+AA
Sbjct: 480 LERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAA 539

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
              HG+G   ++L  +M   G+  D+ +F   LSA     +++EG++    +HG   +  
Sbjct: 540 NAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQ----LHG-LAVKL 594

Query: 554 GEDH----YARFIDLLCRAGKFSEAKDVIDSLP--FKPSAPIWEALLAGCRIHG 601
           G +H    +    D+  + G+  E   V+  LP     S P W  L++    HG
Sbjct: 595 GFEHDSFIFNAAADMYSKCGEIGE---VVKMLPPSVNRSLPSWNILISALGRHG 645



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 139/517 (26%), Positives = 226/517 (43%), Gaps = 92/517 (17%)

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
           Y+    VK AR +F+  P+  R+ V +N M++           +E FR M    +KP +F
Sbjct: 2   YTKFGRVKPARHLFDIMPV--RNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSF 59

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
              S+++A        ++ +Q+H  V KSG          L  VYV            L+
Sbjct: 60  VIASLVTACGRSGSMFREGVQVHGFVAKSGL---------LSDVYVSTAILHLYGVYGLV 110

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM-SENVGVAWNALISGYVHR 269
             +R+VF+EMP+R+ +SWT++M GY      +   +   GM  E VG   N++       
Sbjct: 111 SCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSM------- 163

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFR---LGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                           + VIS+C   GL +   LG+Q+   ++    K   E  L V N+
Sbjct: 164 ----------------SLVISSC---GLLKDESLGRQIIGQVV----KSGLESKLAVENS 200

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR----ERN 382
           L+++    G V+ A  IF+QM ERD +SWN+I +AY   G I+E+  +F  MR    E N
Sbjct: 201 LISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVN 260

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
             + + ++S L    + +                                    GR +H 
Sbjct: 261 STTVSTLLSVLGHVDHQKW-----------------------------------GRGIHG 285

Query: 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
            +V  G+DS +   N L+ MYA  G    AN VF  MP  D +SWN+++A+    G    
Sbjct: 286 LVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLD 345

Query: 503 AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY---GIPPGEDHYA 559
           A+ L   M+  G   + +TF + L+AC      ++GR     +HG     G+   +    
Sbjct: 346 ALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGR----ILHGLVVVSGLFYNQIIGN 401

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
             + +  + G+ SE++ V+  +P +     W AL+ G
Sbjct: 402 ALVSMYGKIGEMSESRRVLLQMP-RRDVVAWNALIGG 437



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 135/315 (42%), Gaps = 46/315 (14%)

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           +Y K G+V  AR +F+ MP R+ VSWN ++S  V  GL                      
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLY--------------------- 39

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL-ENGRQLHAQLVHSG 448
                      EG++ F +M   G KP  +  A  +T+C   G++   G Q+H  +  SG
Sbjct: 40  ----------LEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSG 89

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
             S +    A++ +Y   G+V  +  VF  MP+ + VSW +++      G     I++Y+
Sbjct: 90  LLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYK 149

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKE---GRRYFETMHGPYGIPPGEDHYARFIDLL 565
            M  EG+  +  +   V+S+C   GL+K+   GR+    +    G+          I +L
Sbjct: 150 GMRGEGVGCNENSMSLVISSC---GLLKDESLGRQIIGQVV-KSGLESKLAVENSLISML 205

Query: 566 CRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP--HHAGT 623
              G    A  + D +  + +   W ++ A    +G+    I+ + ++F LM   H    
Sbjct: 206 GSMGNVDYANYIFDQMSERDTIS-WNSIAAAYAQNGH----IEESFRIFSLMRRFHDEVN 260

Query: 624 YVLLSNMYANLGRWD 638
              +S + + LG  D
Sbjct: 261 STTVSTLLSVLGHVD 275



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 150/351 (42%), Gaps = 75/351 (21%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +HA+++S+GF+  EH+ N LI +Y K   L  ++ LF+ +                 
Sbjct: 483 GKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGL----------------- 525

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
            DN               R+ + +NAM+ A +H+ +G   ++L   MR   V  D F+F+
Sbjct: 526 -DN---------------RNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFS 569

Query: 154 SVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
             LSA A L V EE Q  Q+H   VK G    + + NA   +Y KC           +G 
Sbjct: 570 EGLSAAAKLAVLEEGQ--QLHGLAVKLGFEHDSFIFNAAADMYSKC---------GEIGE 618

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
             ++      R   SW  +++   ++ Y +                    +    H   +
Sbjct: 619 VVKMLPPSVNRSLPSWNILISALGRHGYFEE-------------------VCATFH---E 656

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVTLY 331
           ML + I+    T+ S+++AC++ GL   G   +  + R    +P  E  + V    + L 
Sbjct: 657 MLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICV----IDLL 712

Query: 332 WKCGKVNEARDIFNQMPER--DLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
            + G++ EA    ++MP +  DLV W ++L++    G +D  +   E + +
Sbjct: 713 GRSGRLAEAETFISKMPMKPNDLV-WRSLLASCKIHGNLDRGRKAAENLSK 762


>gi|297794157|ref|XP_002864963.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310798|gb|EFH41222.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 720

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 254/786 (32%), Positives = 410/786 (52%), Gaps = 116/786 (14%)

Query: 11  TLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYAR 70
           T  + ++  L+ C     I+    +++ A M+ SGF P E   ++L+D   K  ++ YAR
Sbjct: 45  TTTHTFSQLLRQCIDERSISG--IKNIQAQMLKSGF-PVELSGSKLVDASLKCGEIGYAR 101

Query: 71  TLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNG 130
            LFD +P+  IV                                  +N++I  Y  +   
Sbjct: 102 QLFDGMPERHIVT---------------------------------WNSIIAYYIKHRRS 128

Query: 131 HAAIELFRDMRRDDVKPDNFTFTSVLSALA-LIVEEEKQCMQMHCTVVKSG---TGLFTS 186
             A+E++R M  ++V PD +T +SV  A + L +E+E Q  + H   V  G   + +F  
Sbjct: 129 KEAVEMYRLMISNNVLPDEYTLSSVFKAFSDLSLEKEAQ--RSHGLAVILGLEVSNVF-- 184

Query: 187 VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV-KNDYLDAAR 245
           V +AL+ +YVK     F  +R     A+ V D + E+D +  T ++ GY  K +  +A +
Sbjct: 185 VGSALVDMYVK-----FGKTRE----AKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVK 235

Query: 246 EFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
            F                         ML+ ++Q +E+TY SV+ +C N      GK +H
Sbjct: 236 AFQS-----------------------MLVEKVQPNEYTYASVLISCGNLKDIGNGKLIH 272

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365
             ++    K   E +L    +L+T+Y +C                               
Sbjct: 273 GLMV----KSGFESALASQTSLLTMYLRCS------------------------------ 298

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425
            L+D++  +F+ ++  N ++WT +ISGL QNG  E  L  F +M  +  KP  +  + A+
Sbjct: 299 -LVDDSLLVFKCIKYPNQVTWTSLISGLVQNGREETALIEFRKMMRDSVKPNSFTLSSAL 357

Query: 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV 485
             C+ L   E GRQ+H  +   G+D    AG+ LI +Y +CG  + A  VF+T+  VD +
Sbjct: 358 RGCSNLAMFEEGRQVHGIVSKYGFDRDKYAGSGLIELYGKCGCSDMARLVFDTLSEVDVI 417

Query: 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETM 545
           S N MI +  Q+G G  A+EL+E+M+  G+ P+ +T L+VL ACN++GLV+EG   F++ 
Sbjct: 418 SLNTMIYSYAQNGFGREALELFERMINLGLQPNDVTVLSVLLACNNSGLVEEGCELFDSF 477

Query: 546 HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDL 605
                I    DHYA  +D+L RAG+  EA+ +I  +   P   +W  LL+ C++H  +++
Sbjct: 478 RKD-KIMLTNDHYACMVDMLGRAGRLEEAEMLITEVT-NPDLVLWRTLLSACKVHRKVEM 535

Query: 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDN 665
             +   ++ ++ P   GT +LLSN+YA+ G+W     ++  M++  +KK P  SW+E+D 
Sbjct: 536 AERITRKILEIAPGDEGTLILLSNLYASTGKWKRVIEMKSKMKEMKLKKNPAMSWVEIDK 595

Query: 666 KVHVFLVDDT-AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSE 724
           + H F+  D  +HP ++ + + LE+L+ + + LGYV D   V  DME   KE +L  HSE
Sbjct: 596 ETHTFMAGDLFSHPNSEQILENLEELIKKAKDLGYVEDKSCVFQDMEETAKERSLHQHSE 655

Query: 725 KLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKC 784
           KLA+AF + +  GG ++R+LKNLR+C DCH+  K +S+++ REI+ RD KRFHHFRDG C
Sbjct: 656 KLAIAFAVWRNVGG-SIRILKNLRVCVDCHSWIKIVSRIIKREIICRDSKRFHHFRDGSC 714

Query: 785 SCGDYW 790
           SCGDYW
Sbjct: 715 SCGDYW 720



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 101/221 (45%), Gaps = 16/221 (7%)

Query: 403 LKLFSQMRLEGFKPCD-----YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN 457
           L + SQ RL     CD     + F+  +  C    ++   + + AQ++ SG+   LS G+
Sbjct: 28  LSINSQFRLLCI-TCDSLTTTHTFSQLLRQCIDERSISGIKNIQAQMLKSGFPVELS-GS 85

Query: 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
            L+    +CG +  A  +F+ MP    V+WN++IA   +H     A+E+Y  M+   +LP
Sbjct: 86  KLVDASLKCGEIGYARQLFDGMPERHIVTWNSIIAYYIKHRRSKEAVEMYRLMISNNVLP 145

Query: 518 DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY----ARFIDLLCRAGKFSE 573
           D  T  +V  A +   L KE +R     HG   I   E       +  +D+  + GK  E
Sbjct: 146 DEYTLSSVFKAFSDLSLEKEAQRS----HGLAVILGLEVSNVFVGSALVDMYVKFGKTRE 201

Query: 574 AKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
           AK V+D +  K    I  AL+ G    G     ++A + + 
Sbjct: 202 AKLVLDRVEEKDVVLI-TALIVGYSQKGEDTEAVKAFQSML 241


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/681 (34%), Positives = 377/681 (55%), Gaps = 74/681 (10%)

Query: 151 TFTSVLSALALIVEEEKQCM-------QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
           T TS LS  A++     QC        Q H  ++++G    + +  +L+  Y    ++ +
Sbjct: 26  TETSKLSHKAILHLLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRY 85

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
           +S  S +    RVFD + + +   W  M+   ++N+                   + A++
Sbjct: 86  LSFESSL----RVFDFVRKPNVFLWNCMIKVCIENNE-----------------PFKAIL 124

Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
             Y     +M++   + +++TY +V+ AC++SG+   G QVHA+L++            +
Sbjct: 125 LYY-----EMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGH----I 175

Query: 324 NNALVTLYWKCGKVNEARDIFN-QMPERDLVSWNAILSAYVSAGLIDEAKSLFEA----- 377
            ++ + +Y   G++ EAR I + +  E D V WNA++  Y+  G ++ A+ LFE      
Sbjct: 176 LSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRS 235

Query: 378 ---------------------------MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
                                      M+ER+ +SW+ MI G  Q G   E L++F QM+
Sbjct: 236 MISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQ 295

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
            E  +P  +     +++CA LGAL+ GR +H     +        G +L+ MYA+CG ++
Sbjct: 296 KEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRID 355

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
            A  VF  M N +  SWNAMI  L  HG    AI+L+ +M    I P+ ITF+ VL+AC 
Sbjct: 356 LAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DIYPNEITFVGVLNACA 412

Query: 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590
           H GLV++G   F +M   YG+ P  +HY   +DLL RAG  +EA+ V+ S+P +P+  +W
Sbjct: 413 HGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVW 472

Query: 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650
            ALL  CR HGN++LG +  + L +L P ++G Y LLSN+YA  GRW++   VRKLM++R
Sbjct: 473 GALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKER 532

Query: 651 GVKKEPGCSWIEVD-NKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHD 709
           G+K  PG S I++   +VH F++ D +HP+ + +Y+ L+++   ++  GY PD   VL D
Sbjct: 533 GIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFD 592

Query: 710 MESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIV 769
           ++ ++KE A+  HSEKLA+ FGL+    G T+R++KNLR+C DCH+A K +S+V  REI+
Sbjct: 593 IDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREII 652

Query: 770 VRDGKRFHHFRDGKCSCGDYW 790
           VRD  R+HHFR+G CSC D+W
Sbjct: 653 VRDRIRYHHFRNGACSCKDFW 673



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 133/529 (25%), Positives = 233/529 (44%), Gaps = 105/529 (19%)

Query: 38  HAHMISSGF---------KPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLI 88
           H H+I  G          K   H++N         LK  +A  L     Q   +A  +L+
Sbjct: 16  HHHLIPKGHSTETSKLSHKAILHLLNTQCTTSLHHLKQAHALILRTGHLQDSYIA-GSLV 74

Query: 89  AAYSASDNVKLAREMFNKTPLKMRDTV------FYNAMITAYSHNSNGHAAIELFRDMRR 142
            +Y+   NV   R +  ++ L++ D V       +N MI     N+    AI L+ +M  
Sbjct: 75  KSYA---NVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVV 131

Query: 143 DDVKPDNFTFTSVLSAL--ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVS 200
              +P+ +T+ +VL A   + +V E    +Q+H  +VK G G    +L++ I +Y     
Sbjct: 132 AHSRPNKYTYPAVLKACSDSGVVAE---GVQVHAHLVKHGLGGDGHILSSAIRMYASF-- 186

Query: 201 SPFVSSRSLMG-------------------------AARRVFDEMPERDELS-WTTMMTG 234
              V +R ++                          AAR +F+ MP+R  +S W  M++G
Sbjct: 187 GRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISG 246

Query: 235 YVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLML---------RIQLDEFTY 285
           + +   ++ AREF D M E   ++W+A+I GY+     M  L         +I+  +F  
Sbjct: 247 FSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVL 306

Query: 286 TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFN 345
            SV+SACAN G    G+ +H Y  R     + +    +  +LV +Y KCG+++ A ++F 
Sbjct: 307 PSVLSACANLGALDQGRWIHTYAKRN----SIQLDGVLGTSLVDMYAKCGRIDLAWEVFE 362

Query: 346 QMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKL 405
           +M  +++ SWNA                               MI GLA +G  E+ + L
Sbjct: 363 KMSNKEVSSWNA-------------------------------MIGGLAMHGRAEDAIDL 391

Query: 406 FSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYA 464
           FS+M +    P +  F G + +CA  G ++ G  +   +    G +  +     ++ +  
Sbjct: 392 FSKMDI---YPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLG 448

Query: 465 RCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGNGARAIELYEQMLK 512
           R G++  A  V +++P   + + W A++ A  +HGN    +EL E++ K
Sbjct: 449 RAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGN----VELGERVGK 493



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 98/435 (22%), Positives = 175/435 (40%), Gaps = 75/435 (17%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y + L+ C     +   +   VHAH++  G     HI++  I +Y    +LV AR + D+
Sbjct: 141 YPAVLKACSDSGVVAEGV--QVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDD 198

Query: 76  IP-QPDIVARTTLIAAYSASDNVKLAREMFNKTP-------------------------- 108
              + D V    +I  Y     V+ ARE+F   P                          
Sbjct: 199 KGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVARE 258

Query: 109 ----LKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE 164
               +K RD + ++AMI  Y        A+E+F  M+++ ++P  F   SVLSA A +  
Sbjct: 259 FFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGA 318

Query: 165 EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERD 224
            + Q   +H    ++   L   +  +L+ +Y KC           +  A  VF++M  ++
Sbjct: 319 LD-QGRWIHTYAKRNSIQLDGVLGTSLVDMYAKC---------GRIDLAWEVFEKMSNKE 368

Query: 225 ELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFT 284
             SW  M+ G   +   + A +    M                          I  +E T
Sbjct: 369 VSSWNAMIGGLAMHGRAEDAIDLFSKMD-------------------------IYPNEIT 403

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           +  V++ACA+ GL + G  +    +R E    P+  +     +V L  + G + EA  + 
Sbjct: 404 FVGVLNACAHGGLVQKGLTIFNS-MRKEYGVEPQ--IEHYGCIVDLLGRAGLLTEAEKVV 460

Query: 345 NQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE---RNLLSWTVMISGLAQNGYGE 400
           + +P E     W A+L A    G ++  + + + + E   +N   +T++ +  A+ G  E
Sbjct: 461 SSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWE 520

Query: 401 EGLKLFSQMRLEGFK 415
           E  ++   M+  G K
Sbjct: 521 EVGEVRKLMKERGIK 535


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
            sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 252/718 (35%), Positives = 392/718 (54%), Gaps = 81/718 (11%)

Query: 81   IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
            I     L+  Y+    +  A  +F    ++ RD + +N +ITA   N    AA+  +  M
Sbjct: 418  IAVSNGLVNMYAKCGAIDKACRVFQL--MEARDRISWNTIITALDQNGYCEAAMMNYCLM 475

Query: 141  RRDDVKPDNFTFTSVLSA---LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
            R++ + P NF   S LS+   L L+   +    Q+HC  VK G  L TSV NAL+ +Y +
Sbjct: 476  RQNSIGPSNFAAISGLSSCAGLGLLAAGQ----QLHCDAVKWGLYLDTSVSNALVKMYGE 531

Query: 198  CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
            C           M     +F+ M   D +SW ++M     +            ++E+V V
Sbjct: 532  C---------GRMSECWEIFNSMSAHDVVSWNSIMGVMASSQA---------PITESVQV 573

Query: 258  AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
              N + SG V             ++ T+ + ++A     +  LGKQ+H+ +L+       
Sbjct: 574  FSNMMKSGLVP------------NKVTFVNFLAALTPLSVLELGKQIHSVMLK------- 614

Query: 318  EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
                                       + + E + V  NA++S Y  +G +D  + LF  
Sbjct: 615  ---------------------------HGVTEDNAVD-NALMSCYAKSGDVDSCERLFSR 646

Query: 378  MR-ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY-AFAGAITSCAGLGALE 435
            M   R+ +SW  MISG   NG+ +E +     M +   +  D+  F+  + +CA + ALE
Sbjct: 647  MSGRRDAISWNSMISGYIYNGHLQEAMDCVCLM-MHSEQMMDHCTFSIVLNACASVAALE 705

Query: 436  NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
             G ++HA  + S  +S +   +AL+ MY++CG ++ A+ VF++M   +  SWN+MI+   
Sbjct: 706  RGMEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYA 765

Query: 496  QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
            +HG G +A+E++E+M + G  PD +TF++VLSAC+HAGLV+ G  YFE M   YGI P  
Sbjct: 766  RHGLGRKALEIFEEMQESGESPDHVTFVSVLSACSHAGLVERGLDYFELME-DYGILPRI 824

Query: 556  DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC---RIHGNIDLGIQAAEQ 612
            +HY+  IDLL RAG+  + ++ +  +P KP+  IW  +L  C   +    IDLG +A+  
Sbjct: 825  EHYSCVIDLLGRAGELDKIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRM 884

Query: 613  LFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLV 672
            L +L P +   YVL S  +A +GRW+D A+ R  M+   VKKE G SW+ + + VH F+ 
Sbjct: 885  LLELEPQNPVNYVLSSKFHAAIGRWEDTAKARAAMKGAAVKKEAGRSWVTLTDGVHTFIA 944

Query: 673  DDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGL 732
             D +HP  + +Y+ L  L+ ++R  GYVP T++VLHD+E + KE  L  HSEKLAVAF L
Sbjct: 945  GDRSHPNTKEIYEKLNFLIQKIRNAGYVPLTEYVLHDLEEENKEELLRYHSEKLAVAFVL 1004

Query: 733  MKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             +   G  +R++KNLR+CGDCH AF+++S++VGR+I++RD  RFHHF+DGKCSCGDYW
Sbjct: 1005 TRSSSGGPIRIMKNLRVCGDCHTAFRYISQIVGRQIILRDSIRFHHFKDGKCSCGDYW 1062



 Score =  180 bits (457), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 149/625 (23%), Positives = 263/625 (42%), Gaps = 107/625 (17%)

Query: 2   MMKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIY- 60
           M++     R  +  + S L+ C    P     A  VH  +  + F     + N LI +Y 
Sbjct: 157 MLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISMYG 216

Query: 61  -CKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNA 119
            C     + A+ +FD  P                                 +RD + +NA
Sbjct: 217 SCSVGPPILAQRVFDTTP---------------------------------VRDLITWNA 243

Query: 120 MITAYSHNSNGHAAIELFRDMRRDD----VKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
           +++ Y+   +      LFR M+ DD    ++P   TF S+++A  L         Q+   
Sbjct: 244 LMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTFGSLITATYLSSCSLGLLDQLFVR 303

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
           V+KSG      V +AL+S + +           ++  A+ ++  + ER+ ++   ++ G 
Sbjct: 304 VLKSGCSSDLYVGSALVSAFAR---------HGMLDEAKDIYLGLKERNAVTLNGLIAGL 354

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
           VK  + +AA E   G  ++  V     +  YV       +L   + EF+        A  
Sbjct: 355 VKQQHGEAAAEIFMGARDSAAVN----VDTYV-------VLLSAIAEFS-------TAEQ 396

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
           GL R G++VHA++LR          + V+N LV +Y KCG +++A  +F  M  RD +SW
Sbjct: 397 GL-RKGREVHAHVLRAGHIYR---KIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISW 452

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           N I++A                               L QNGY E  +  +  MR     
Sbjct: 453 NTIITA-------------------------------LDQNGYCEAAMMNYCLMRQNSIG 481

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P ++A    ++SCAGLG L  G+QLH   V  G     S  NAL+ MY  CG +     +
Sbjct: 482 PSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEI 541

Query: 476 FNTMPNVDSVSWNAMIAALG-QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
           FN+M   D VSWN+++  +         +++++  M+K G++P+++TF+  L+A     +
Sbjct: 542 FNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSV 601

Query: 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
           ++ G++    M   +G+          +    ++G     + +   +  +  A  W +++
Sbjct: 602 LELGKQIHSVML-KHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMI 660

Query: 595 AGCRIHGNIDLGIQAAEQLFQLMPH 619
           +G   +G+    +Q A     LM H
Sbjct: 661 SGYIYNGH----LQEAMDCVCLMMH 681



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 124/471 (26%), Positives = 216/471 (45%), Gaps = 74/471 (15%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+     L+ +Y+    +  AR +F+  P   R+ V +  +I+ +  +     A  LFR 
Sbjct: 99  DLFLANHLVNSYAKGARLDAARRVFDGMP--GRNAVSWTCLISGHVLSGLPEDAFPLFRA 156

Query: 140 MRRDD--VKPDNFTFTSVLSALALIVEEEKQ-CMQMHCTVVKSGTGLFTSVLNALISVYV 196
           M R+    +P +FTF SVL A      +     +Q+H  V K+     T+V NALIS+Y 
Sbjct: 157 MLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISMYG 216

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
            C   P +        A+RVFD  P RD ++W  +M+ Y K                   
Sbjct: 217 SCSVGPPI-------LAQRVFDTTPVRDLITWNALMSVYAKRG----------------- 252

Query: 257 VAWNALISGYVHRELKMLMLRIQL--DEFTYTSVISAC-ANSGLFRLGKQVHAYLLRTEA 313
              +A+ +  + R ++     I+L   E T+ S+I+A   +S    L  Q+   +L++  
Sbjct: 253 ---DAICTFTLFRAMQYDDSGIELRPTEHTFGSLITATYLSSCSLGLLDQLFVRVLKSGC 309

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
                  L V +ALV+ + + G ++EA+DI+  + ER+ V+ N +++  V     + A  
Sbjct: 310 SS----DLYVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAE 365

Query: 374 LFEAMRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
           +F   R+    N+ ++ V++S +A+    E+GL+                          
Sbjct: 366 IFMGARDSAAVNVDTYVVLLSAIAEFSTAEQGLR-------------------------- 399

Query: 431 LGALENGRQLHAQLVHSGYD-SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
                 GR++HA ++ +G+    ++  N L+ MYA+CG ++ A  VF  M   D +SWN 
Sbjct: 400 -----KGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNT 454

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
           +I AL Q+G    A+  Y  M +  I P     ++ LS+C   GL+  G++
Sbjct: 455 IITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQ 505



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 119/428 (27%), Positives = 196/428 (45%), Gaps = 85/428 (19%)

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H  VVK G      + N L++ Y K          + + AARRVFD MP R+ +SWT +
Sbjct: 87  LHLEVVKRGLTHDLFLANHLVNSYAK---------GARLDAARRVFDGMPGRNAVSWTCL 137

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           ++G+V           L G+ E+    + A++     RE        +   FT+ SV+ A
Sbjct: 138 ISGHV-----------LSGLPEDAFPLFRAML-----REGP----GCRPTSFTFGSVLRA 177

Query: 292 CANSGLFRLG--KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC--GKVNEARDIFNQM 347
           C +SG  RLG   QVH  + +TE          V NAL+++Y  C  G    A+ +F+  
Sbjct: 178 CQDSGPDRLGFAVQVHGLVSKTEFTSNT----TVCNALISMYGSCSVGPPILAQRVFDTT 233

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
           P RDL++WNA++S Y   G      +LF AM+                  Y + G++L  
Sbjct: 234 PVRDLITWNALMSVYAKRGDAICTFTLFRAMQ------------------YDDSGIEL-- 273

Query: 408 QMRLEGFKPCDYAFAGAIT----SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
                  +P ++ F   IT    S   LG L+   QL  +++ SG  S L  G+AL++ +
Sbjct: 274 -------RPTEHTFGSLITATYLSSCSLGLLD---QLFVRVLKSGCSSDLYVGSALVSAF 323

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
           AR G+++ A  ++  +   ++V+ N +IA L +  +G  A E++    ++    +  T++
Sbjct: 324 ARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIF-MGARDSAAVNVDTYV 382

Query: 524 TVLSACNHAGLVKEGRRYFETMHG----------PYGIPPG-EDHYARF--IDLLCRAGK 570
            +LSA       ++G R    +H              +  G  + YA+   ID  CR  +
Sbjct: 383 VLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQ 442

Query: 571 FSEAKDVI 578
             EA+D I
Sbjct: 443 LMEARDRI 450



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 148/359 (41%), Gaps = 67/359 (18%)

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           DL   N ++++Y     +D A+ +F+ M  RN +SWT +ISG   +G  E+   LF  M 
Sbjct: 99  DLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGLPEDAFPLFRAML 158

Query: 411 LE--GFKPCDYAFAGAITSC--AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
            E  G +P  + F   + +C  +G   L    Q+H  +  + + S+ +  NALI+MY  C
Sbjct: 159 REGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISMYGSC 218

Query: 467 GVVEA--ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG----ILPDRI 520
            V     A  VF+T P  D ++WNA+++   + G+      L+  M  +     + P   
Sbjct: 219 SVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEH 278

Query: 521 TF-----LTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY--ARFIDLLCRAGKFSE 573
           TF      T LS+C+   L +   R  ++           D Y  +  +    R G   E
Sbjct: 279 TFGSLITATYLSSCSLGLLDQLFVRVLKS-------GCSSDLYVGSALVSAFARHGMLDE 331

Query: 574 AKDVIDSLPFKPSAPIWEALLAGC--RIHG----------------NIDLGIQAAEQLFQ 615
           AKD+   L  + +A     L+AG   + HG                N+D  +     + +
Sbjct: 332 AKDIYLGLKER-NAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNVDTYVVLLSAIAE 390

Query: 616 LMPHHAG--------TYVL--------------LSNMYANLGRWDDAARVRKLM--RDR 650
                 G         +VL              L NMYA  G  D A RV +LM  RDR
Sbjct: 391 FSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDR 449


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 250/742 (33%), Positives = 388/742 (52%), Gaps = 92/742 (12%)

Query: 60  YCKSLKLVYARTLFDEIPQPDIVARTTLIAA--YSASDNVKLAREMFNKTPLKMRDTVFY 117
           +   LK ++AR L   + Q + +    L  A  + +++  KL       + +K  +   +
Sbjct: 28  FFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVF-----SQVKEPNIFLW 82

Query: 118 NAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVV 177
           N MI           AI L+  MR     P+NFT   VL A A  ++  +  +++H  +V
Sbjct: 83  NTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDV-RLGLKIHSLLV 141

Query: 178 KSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK 237
           K+G             V+VK                               T++++ YVK
Sbjct: 142 KAGYDH---------DVFVK-------------------------------TSLLSLYVK 161

Query: 238 NDYLDAAREFLDGMSENVGVAWNALISGYVH----REL-----KMLMLRIQLDEFTYTSV 288
            D  D A +  D + +   V+W A+I+GY+     RE      K+L + ++ D F+   V
Sbjct: 162 CDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKV 221

Query: 289 ISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
           ++ACA  G    G+ +  Y+  +                             R++F    
Sbjct: 222 LAACARLGDCTSGEWIDRYISDS--------------------------GMGRNVFVA-- 253

Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQ 408
                   ++L  YV  G ++ A  +F AM E++++SW+ MI G A NG  ++ L LF Q
Sbjct: 254 -------TSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQ 306

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
           M+ E  KP  Y   G +++CA LGAL+ G    + +  + + S+   G ALI MY++CG 
Sbjct: 307 MQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGS 366

Query: 469 VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
           V  A  +F  M   D V WNAM+  L  +G+      L+  + K GI PD  TF+ +L  
Sbjct: 367 VTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCG 426

Query: 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
           C H G V EGR++F  M   + + P  +HY   +DLL RAG  +EA  +I+++P KP+A 
Sbjct: 427 CTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAV 486

Query: 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648
           +W ALL GC++H +  L  Q  ++L +L P ++G YV LSN+Y+   RW++A ++R  M+
Sbjct: 487 VWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMK 546

Query: 649 DRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLH 708
           ++ ++K   CSWIE+D  VH FLV D +H  ++ +Y  L++L  E++ +G+VP T+FVL 
Sbjct: 547 EQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLF 606

Query: 709 DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREI 768
           D+E ++KE+ L  HSEKLAVAFGL+  P    +RV+KNLR+CGDCH+A K +SK+  REI
Sbjct: 607 DIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREI 666

Query: 769 VVRDGKRFHHFRDGKCSCGDYW 790
           ++RD  RFH F DG CSC DYW
Sbjct: 667 IIRDTNRFHTFIDGSCSCRDYW 688



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 73/191 (38%), Gaps = 10/191 (5%)

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
           GL      + +HA+L+    D      N ++      G    +  VF+ +   +   WN 
Sbjct: 25  GLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNT 84

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY 549
           MI  L        AI LY  M   G LP+  T   VL AC     V+ G +    +    
Sbjct: 85  MIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLL---- 140

Query: 550 GIPPGEDH----YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDL 605
            +  G DH        + L  +   F +A  V D +P K     W A++ G    G+   
Sbjct: 141 -VKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVS-WTAIITGYISSGHFRE 198

Query: 606 GIQAAEQLFQL 616
            I A ++L ++
Sbjct: 199 AIGAFKKLLEM 209


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/620 (38%), Positives = 350/620 (56%), Gaps = 33/620 (5%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           Q+H  ++K  TGL    + A  S  +   +SP   S   +  AR VFD +   +   W T
Sbjct: 36  QIHGQMLK--TGLILDEIPA--SKLLAFCASPNSGS---LAYARTVFDRIFRPNTFMWNT 88

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           M+ GY  +   + A                     Y H    ML   +  + +T+  ++ 
Sbjct: 89  MIRGYSNSKEPEEALLL------------------YHH----MLYHSVPHNAYTFPFLLK 126

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           AC++       +Q+HA++++          +   N+L+ +Y K G +  AR +F+Q+ +R
Sbjct: 127 ACSSMSALEETQQIHAHIIKMGFGS----EIYTTNSLLNVYSKSGDIKSARLLFDQVDQR 182

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           D VSWN+++  Y   G I+ A  +F  M ERN++SWT MISG    G  +E L LF +M+
Sbjct: 183 DTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQ 242

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
             G K  + A    + +CA LG L+ G+ +HA +     +     G  LI MYA+CG +E
Sbjct: 243 TAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLE 302

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
            A  VF  M       W AMI+    HG G  A+E + +M   G+ P+++TF  +L+AC+
Sbjct: 303 EAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACS 362

Query: 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590
           HAGLV E +  FE+M   +G  P  +HY   +DLL RAG   EA+++I+++P KP+A IW
Sbjct: 363 HAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIW 422

Query: 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650
            ALL  C IHGN++LG Q  + L Q+ P H G Y+ L++++A  G W+ AARVR+ M+++
Sbjct: 423 GALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQ 482

Query: 651 GVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDM 710
           GV K PGCS I V+   H FL  D +HP+ + +   LEQ+V  +R+ GY P    +L D+
Sbjct: 483 GVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDL 542

Query: 711 ESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVV 770
           E  +KE A+  HSEKLAV FGL+    G T+R++KNLR+C DCH   K +SKV  REI++
Sbjct: 543 EDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILM 602

Query: 771 RDGKRFHHFRDGKCSCGDYW 790
           RD  RFH F+DG C+CGDYW
Sbjct: 603 RDRTRFHLFKDGNCTCGDYW 622



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 133/507 (26%), Positives = 230/507 (45%), Gaps = 84/507 (16%)

Query: 22  LCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDI 81
           LC P + ++S    +   H++      R   +  L  I+ + LK      + DEIP   +
Sbjct: 5   LCTPTSQLSSESNAAQTLHLLQ-----RCSNMEELRQIHGQMLK---TGLILDEIPASKL 56

Query: 82  VARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMR 141
           +A      A   S ++  AR +F++  +   +T  +N MI  YS++     A+ L+  M 
Sbjct: 57  LA----FCASPNSGSLAYARTVFDR--IFRPNTFMWNTMIRGYSNSKEPEEALLLYHHML 110

Query: 142 RDDVKPDNFTFTSVLSAL-ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVS 200
              V  + +TF  +L A  ++   EE Q  Q+H  ++K G G      N+L++VY     
Sbjct: 111 YHSVPHNAYTFPFLLKACSSMSALEETQ--QIHAHIIKMGFGSEIYTTNSLLNVY----- 163

Query: 201 SPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWN 260
               S    + +AR +FD++ +RD +SW +M+ GY K   ++ A E  + M E   ++W 
Sbjct: 164 ----SKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWT 219

Query: 261 ALISGYV------------HRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
           ++ISG V            HR   M    I+LD     S + ACA+ G+   GK +HAY+
Sbjct: 220 SMISGCVGAGKPKEALNLFHR---MQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYI 276

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
            + E +  P         L+ +Y KCG + EA ++F +M E+ +  W A++S Y      
Sbjct: 277 KKHEIEIDPILGC----VLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGY------ 326

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
                                    A +G G E L+ F +M+  G +P    F G +T+C
Sbjct: 327 -------------------------AIHGRGREALEWFMKMQTAGVEPNQMTFTGILTAC 361

Query: 429 AGLGALENGRQLHAQL--VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSV 485
           +  G +   + L   +  +H G+  S+     ++ +  R G+++ A  +   MP   ++ 
Sbjct: 362 SHAGLVHEAKLLFESMERIH-GFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAA 420

Query: 486 SWNAMIAALGQHGNGARAIELYEQMLK 512
            W A++ A   HGN    +EL +Q+ K
Sbjct: 421 IWGALLNACHIHGN----LELGKQIGK 443


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/578 (40%), Positives = 333/578 (57%), Gaps = 51/578 (8%)

Query: 254 NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
           N G ++ A I  Y++    M  + + ++ FTY  V+  CA+      G+ VH  ++RT  
Sbjct: 109 NAGRSYEA-IDLYIY----MQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGF 163

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG------- 366
                  L V  ALV +Y KCG++ +A ++F++M  RD+V W A+++ Y  A        
Sbjct: 164 GS----DLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALM 219

Query: 367 --------------------------------LIDEAKSLFEAMRERNLLSWTVMISGLA 394
                                            I  A+ +F+ M ERN +SW  M+SG  
Sbjct: 220 LFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDRMEERNGISWNSMLSGYT 279

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
           QNG   + L LF+QM+     P        +++C+ LG+   GR+LH  ++ S  D   +
Sbjct: 280 QNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTT 339

Query: 455 AGNALITMYARCGVVEAANCVFNT--MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
             NA++ MY +CG ++ A  +FN   +   D  SWN +I+  G HG+G  A+EL+ +M  
Sbjct: 340 LRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQV 399

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
           EG+ P+ ITF ++LSAC+HAGL+ EGR+ F  M     + P   HYA  +D+L RAG  +
Sbjct: 400 EGVEPNDITFTSILSACSHAGLIDEGRKCFADM-TKLSVRPEMKHYACMVDMLGRAGFLN 458

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632
           EA  +I  +P +PS  +W ALL  CRIHGN +LG  AA  LFQL P H G YVL+SN+YA
Sbjct: 459 EAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYA 518

Query: 633 NLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVL 692
              +W +   VR+ M+ RG+KK    S IE   +VH F   D + P  + VY+ +E L +
Sbjct: 519 ASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAI 578

Query: 693 EMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGD 752
           EM+ +GYVPD   VLHD+E + KE+ L+ HSEKLAVAFG+MK+  G  ++V KNLR+C D
Sbjct: 579 EMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSD 638

Query: 753 CHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           CH AFKF+S + GR+I+VRDG RFHHF+ G+CSCGDYW
Sbjct: 639 CHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 676



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 134/545 (24%), Positives = 226/545 (41%), Gaps = 135/545 (24%)

Query: 11  TLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPRE-HIINRLIDIYCKSLKLVYA 69
           +L + Y   LQ C     +     + +H+ + + GF     H + RLI +Y K   L  A
Sbjct: 23  SLHHFYDHLLQCCTSLTTL-----KLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSA 77

Query: 70  RTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSN 129
           RTLFD                     +         + P    ++   N M+ AY++   
Sbjct: 78  RTLFD---------------------HRHHHHHGHTQAP----NSFLCNTMLRAYANAGR 112

Query: 130 GHAAIELFRDMRRDDVKPDNFTFTSVL----SALALIVEEEKQCMQMHCTVVKSGTGLFT 185
            + AI+L+  M+R  V  +NFT+  VL    S L  +  E      +H  VV++G G   
Sbjct: 113 SYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGE-----VVHGQVVRTGFGSDL 167

Query: 186 SVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY----- 240
            V  AL+ +Y KC           +G A  VFD M  RD + WT M+T Y + +      
Sbjct: 168 FVEAALVDMYAKC---------GEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKAL 218

Query: 241 ----------------------------------LDAAREFLDGMSENVGVAWNALISGY 266
                                             +  AR   D M E  G++WN+++SGY
Sbjct: 219 MLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDRMEERNGISWNSMLSGY 278

Query: 267 VH--RELKMLMLRIQL-------DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
               R    L L  Q+       +  T   ++SAC+  G   LG+++H +++ ++     
Sbjct: 279 TQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKM---- 334

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFN--QMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
           +    + NA++ +Y KCG ++ A ++FN  ++ ERD+ SWN ++S Y             
Sbjct: 335 DIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGY------------- 381

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
                               +G+G+E L+LFS+M++EG +P D  F   +++C+  G ++
Sbjct: 382 ------------------GVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLID 423

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAAL 494
            GR+  A +        +     ++ M  R G +  A  +   +P+  S   W A++ A 
Sbjct: 424 EGRKCFADMTKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLAC 483

Query: 495 GQHGN 499
             HGN
Sbjct: 484 RIHGN 488



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 93/203 (45%), Gaps = 14/203 (6%)

Query: 362 YVSAGLIDEAKSLFEAM--------RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
           Y   G +  A++LF+          +  N      M+   A  G   E + L+  M+  G
Sbjct: 68  YSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMG 127

Query: 414 FKPCDYAFAGAITSCAG-LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
               ++ +   +  CA  LGA+  G  +H Q+V +G+ S L    AL+ MYA+CG +  A
Sbjct: 128 VGVNNFTYPFVLKVCASELGAV-FGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDA 186

Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
           + VF+ M   D V W AMI    Q     +A+ L+ +M +EG L D IT ++V SA    
Sbjct: 187 HEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQL 246

Query: 533 G----LVKEGRRYFETMHGPYGI 551
           G     +   R  F+ M    GI
Sbjct: 247 GDGRMAISRARLVFDRMEERNGI 269


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/571 (39%), Positives = 324/571 (56%), Gaps = 49/571 (8%)

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY----VHR---ELKMLMLR--IQ 279
             ++  YVK + L+ A +  D M +   ++W  +IS Y    +H+   EL +LMLR  ++
Sbjct: 100 NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVR 159

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            + +TY+SV+ +C      R+   +H                            CG + E
Sbjct: 160 PNVYTYSSVLRSCNGMSDVRM---LH----------------------------CGIIKE 188

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
                    E D+   +A++  +   G  ++A S+F+ M   + + W  +I G AQN   
Sbjct: 189 G-------LESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRS 241

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
           +  L+LF +M+  GF          + +C GL  LE G Q H  +V   YD  L   NAL
Sbjct: 242 DVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNAL 299

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           + MY +CG +E A  VFN M   D ++W+ MI+ L Q+G    A++L+E+M   G  P+ 
Sbjct: 300 VDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNY 359

Query: 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579
           IT + VL AC+HAGL+++G  YF +M   YGI P  +HY   IDLL +AGK  +A  +++
Sbjct: 360 ITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLN 419

Query: 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639
            +  +P A  W  LL  CR+  N+ L   AA+++  L P  AGTY LLSN+YAN  +WD 
Sbjct: 420 EMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDS 479

Query: 640 AARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGY 699
              +R  MRDRG+KKEPGCSWIEV+ ++H F++ D +HP+   V K L QL+  +  +GY
Sbjct: 480 VEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGY 539

Query: 700 VPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKF 759
           VP+T FVL D+E +Q E +L  HSEKLA+AFGLM LP    +R+ KNLRICGDCH   K 
Sbjct: 540 VPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKL 599

Query: 760 MSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            SK+  R IV+RD  R+HHF+DGKCSCGDYW
Sbjct: 600 ASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 122/467 (26%), Positives = 201/467 (43%), Gaps = 113/467 (24%)

Query: 35  RSVHA------HMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLI 88
           R+VH       H+  +G +P   ++N LI++Y K   L  A  LFD++PQ ++++ TT+I
Sbjct: 75  RAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMI 134

Query: 89  AAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPD 148
           +AYS             K  +  +                    A+EL   M RD+V+P+
Sbjct: 135 SAYS-------------KCKIHQK--------------------ALELLVLMLRDNVRPN 161

Query: 149 NFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
            +T++SVL +   + +       +HC ++K G      V +ALI V+ K +  P      
Sbjct: 162 VYTYSSVLRSCNGMSDVR----MLHCGIIKEGLESDVFVRSALIDVFAK-LGEP------ 210

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
               A  VFDEM   D + W +++ G+ +N   D A E    M            +G++ 
Sbjct: 211 --EDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKR----------AGFI- 257

Query: 269 RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALV 328
                       ++ T TSV+ AC    L  LG Q H ++++ +        L +NNALV
Sbjct: 258 -----------AEQATLTSVLRACTGLALLELGMQAHVHIVKYDQ------DLILNNALV 300

Query: 329 TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV 388
            +Y KCG + +A  +FNQM ERD+++W+ ++S     G   EA                 
Sbjct: 301 DMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEA----------------- 343

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH-S 447
                         LKLF +M+  G KP      G + +C+  G LE+G      +    
Sbjct: 344 --------------LKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLY 389

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAA 493
           G D        +I +  + G ++ A  + N M    D+V+W  ++ A
Sbjct: 390 GIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGA 436



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 152/364 (41%), Gaps = 92/364 (25%)

Query: 7   DYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKL 66
           D +R     Y+S L+ C+  + +     R +H  +I  G +    + + LID++ K  + 
Sbjct: 156 DNVRPNVYTYSSVLRSCNGMSDV-----RMLHCGIIKEGLESDVFVRSALIDVFAKLGEP 210

Query: 67  VYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSH 126
             A ++FDE+   D +   ++I                                   ++ 
Sbjct: 211 EDALSVFDEMVTGDAIVWNSIIG---------------------------------GFAQ 237

Query: 127 NSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA---LALIVEEEKQCMQMHCTVVKSGTGL 183
           NS    A+ELF+ M+R     +  T TSVL A   LAL+    +  MQ H  +VK    L
Sbjct: 238 NSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALL----ELGMQAHVHIVKYDQDL 293

Query: 184 FTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDA 243
             +  NAL+ +Y KC S         +  A RVF++M ERD ++W+TM++G  +N Y   
Sbjct: 294 ILN--NALVDMYCKCGS---------LEDALRVFNQMKERDVITWSTMISGLAQNGYSQE 342

Query: 244 AREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ 303
           A +  + M  + G   N +                     T   V+ AC+++GL   G  
Sbjct: 343 ALKLFERMKSS-GTKPNYI---------------------TIVGVLFACSHAGLLEDG-- 378

Query: 304 VHAYLLRTEAK-----PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNA 357
              Y  R+  K     P  E        ++ L  K GK+++A  + N+M  E D V+W  
Sbjct: 379 --WYYFRSMKKLYGIDPVREHY----GCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRT 432

Query: 358 ILSA 361
           +L A
Sbjct: 433 LLGA 436



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 127/313 (40%), Gaps = 62/313 (19%)

Query: 387 TVMISGLAQNGYGEE---GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
           T+++S   +  Y  +    +K    ++  G       ++  I  C    A+  G  +   
Sbjct: 27  TLLLSEFTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRH 86

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
           L  +G+   +   N LI MY +  ++  A+ +F+ MP  + +SW  MI+A  +     +A
Sbjct: 87  LYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKA 146

Query: 504 IELYEQMLKEGILPDRITFLTVLSACN--------HAGLVKEGRRYFETMHGPYGIPPGE 555
           +EL   ML++ + P+  T+ +VL +CN        H G++KEG                 
Sbjct: 147 LELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLE--------------S 192

Query: 556 DHYAR--FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ----- 608
           D + R   ID+  + G+  +A  V D +     A +W +++ G   +   D+ ++     
Sbjct: 193 DVFVRSALIDVFAKLGEPEDALSVFDEM-VTGDAIVWNSIIGGFAQNSRSDVALELFKRM 251

Query: 609 -----AAEQ--LFQLMPHHAGTYVL----------------------LSNMYANLGRWDD 639
                 AEQ  L  ++    G  +L                      L +MY   G  +D
Sbjct: 252 KRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLED 311

Query: 640 AARVRKLMRDRGV 652
           A RV   M++R V
Sbjct: 312 ALRVFNQMKERDV 324


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 250/742 (33%), Positives = 388/742 (52%), Gaps = 92/742 (12%)

Query: 60  YCKSLKLVYARTLFDEIPQPDIVARTTLIAA--YSASDNVKLAREMFNKTPLKMRDTVFY 117
           +   LK ++AR L   + Q + +    L  A  + +++  KL       + +K  +   +
Sbjct: 28  FFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVF-----SQVKEPNIFLW 82

Query: 118 NAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVV 177
           N MI           AI L+  MR     P+NFT   VL A A  ++  +  +++H  +V
Sbjct: 83  NTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDV-RLGLKIHSLLV 141

Query: 178 KSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK 237
           K+G             V+VK                               T++++ YVK
Sbjct: 142 KAGYDH---------DVFVK-------------------------------TSLLSLYVK 161

Query: 238 NDYLDAAREFLDGMSENVGVAWNALISGYVH----REL-----KMLMLRIQLDEFTYTSV 288
            D  D A +  D + +   V+W A+I+GY+     RE      K+L + ++ D F+   V
Sbjct: 162 CDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKV 221

Query: 289 ISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
           ++ACA  G    G+ +  Y+  +                             R++F    
Sbjct: 222 LAACARLGDCTSGEWIDRYISDS--------------------------GMGRNVFVA-- 253

Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQ 408
                   ++L  YV  G ++ A  +F AM E++++SW+ MI G A NG  ++ L LF Q
Sbjct: 254 -------TSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQ 306

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
           M+ E  KP  Y   G +++CA LGAL+ G    + +  + + S+   G ALI MY++CG 
Sbjct: 307 MQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGS 366

Query: 469 VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
           V  A  +F  M   D V WNAM+  L  +G+      L+  + K GI PD  TF+ +L  
Sbjct: 367 VTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCG 426

Query: 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
           C H G V EGR++F  M   + + P  +HY   +DLL RAG  +EA  +I+++P KP+A 
Sbjct: 427 CTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAV 486

Query: 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648
           +W ALL GC++H +  L  Q  ++L +L P ++G YV LSN+Y+   RW++A ++R  M+
Sbjct: 487 VWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMK 546

Query: 649 DRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLH 708
           ++ ++K   CSWIE+D  VH FLV D +H  ++ +Y  L++L  E++ +G+VP T+FVL 
Sbjct: 547 EQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLF 606

Query: 709 DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREI 768
           D+E ++KE+ L  HSEKLAVAFGL+  P    +RV+KNLR+CGDCH+A K +SK+  REI
Sbjct: 607 DIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREI 666

Query: 769 VVRDGKRFHHFRDGKCSCGDYW 790
           ++RD  RFH F DG CSC DYW
Sbjct: 667 IIRDTNRFHTFIDGSCSCRDYW 688



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 73/191 (38%), Gaps = 10/191 (5%)

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
           GL      + +HA+L+    D      N ++      G    +  VF+ +   +   WN 
Sbjct: 25  GLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNT 84

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY 549
           MI  L        AI LY  M   G LP+  T   VL AC     V+ G +    +    
Sbjct: 85  MIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLL---- 140

Query: 550 GIPPGEDH----YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDL 605
            +  G DH        + L  +   F +A  V D +P K     W A++ G    G+   
Sbjct: 141 -VKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVS-WTAIITGYISSGHFRE 198

Query: 606 GIQAAEQLFQL 616
            I A ++L ++
Sbjct: 199 AIGAFKKLLEM 209


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/539 (40%), Positives = 331/539 (61%), Gaps = 12/539 (2%)

Query: 260 NALISGYVHRELKMLMLRIQLDEF-----TYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
           +A+I    H  +++ +  +++  F     T+  V  AC N      G+Q+  + +    K
Sbjct: 5   HAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAI----K 60

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
              E +L V NA++ +Y   G V+EAR +F+   ++DL SWN ++  YV +G I  AK +
Sbjct: 61  IGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEM 120

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
           F+ M ER+++SWT +I+G  Q G  +E L LF +M   G  P ++  A A+ +CA L AL
Sbjct: 121 FDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVAL 180

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM--PNVDSVSWNAMIA 492
           + GR +H  +  S    +     +L+ MYA+CG ++ A  VF+      +    WNAMI 
Sbjct: 181 DQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIG 240

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552
               HG    AI+L+EQM  E + P+++TF+ +L+AC+H  LV+EGR YF++M   YGI 
Sbjct: 241 GYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIE 300

Query: 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
           P  +HY   +DLL R+G   EA++ + ++P  P A IW ALL  CRIH +I+ G +  + 
Sbjct: 301 PEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKI 360

Query: 613 LFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLV 672
           + +L   H G +VLL+N+Y+  G+WD+A  VR+ +   G KK PGCS IE++   H FLV
Sbjct: 361 IKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLV 420

Query: 673 DDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQ-KEYALSTHSEKLAVAFG 731
            D +HP+ + +Y +L+++  +++  GYVP+   VL D++ ++ KE ALS HSEKLA+AFG
Sbjct: 421 GDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFG 480

Query: 732 LMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           L+  P G  +R++KNLR+C DCH A KF+SKV  REI+VRD  R+HHF+DG CSC DYW
Sbjct: 481 LINTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 539



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 110/402 (27%), Positives = 174/402 (43%), Gaps = 68/402 (16%)

Query: 118 NAMITAYSHNSNGHAAIELFRDMRR-DDVKPDNFTFTSVLSALA--LIVEEEKQCMQMHC 174
           +A+I   SHNS     + +F  M R     P+ +TF  V  A    L V E +Q +++H 
Sbjct: 5   HAVIPTSSHNS-----MRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQ-IRVHA 58

Query: 175 TVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTG 234
             +   + LF  V NA+I +Y         ++  L+  ARRVFD   ++D  SW  M+ G
Sbjct: 59  IKIGLESNLF--VTNAMIRMY---------ANWGLVDEARRVFDWSLDQDLYSWNIMIGG 107

Query: 235 YVKNDYLDAAREFLDGMSENVGVAWNALISGYVH----REL-----KMLMLRIQLDEFTY 285
           YV +  +  A+E  D MSE   V+W  +I+GYV     +E      +ML      +EFT 
Sbjct: 108 YVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTL 167

Query: 286 TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFN 345
            S ++ACAN      G+ +H Y+ ++E K           +L+ +Y KCG+++ A  +F+
Sbjct: 168 ASALAACANLVALDQGRWIHVYIDKSEIKMNERLL----ASLLDMYAKCGEIDFAAKVFH 223

Query: 346 QMPERDLV--SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
                 L    WNA++  Y   G   EA  LFE                           
Sbjct: 224 DEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFE--------------------------- 256

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITM 462
               QM++E   P    F   + +C+    +E GR     +  S G +  +     ++ +
Sbjct: 257 ----QMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDL 312

Query: 463 YARCGVV-EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
             R G++ EA   VFN     D+  W A++ A   H +  R 
Sbjct: 313 LGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERG 354



 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 142/352 (40%), Gaps = 38/352 (10%)

Query: 12  LANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYART 71
           L NRY          N +       +  H I  G +    + N +I +Y     +  AR 
Sbjct: 29  LPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARR 88

Query: 72  LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           +FD     D+ +   +I  Y  S  +  A+EMF++  +  RD V +  +I  Y       
Sbjct: 89  VFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDE--MSERDVVSWTTIIAGYVQVGCFK 146

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
            A++LF +M +    P+ FT  S L+A A +V  + Q   +H  + KS   +   +L +L
Sbjct: 147 EALDLFHEMLQTGPPPNEFTLASALAACANLVALD-QGRWIHVYIDKSEIKMNERLLASL 205

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDEL-SWTTMMTGYVKNDYLDAAREFLDG 250
           + +Y KC    F        AA+   DE   + ++  W  M+ GY  +     A +  + 
Sbjct: 206 LDMYAKCGEIDF--------AAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFE- 256

Query: 251 MSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
                                +M + ++  ++ T+ ++++AC++  L   G+    Y   
Sbjct: 257 ---------------------QMKVEKVSPNKVTFVALLNACSHGKLVEEGR---GYFKS 292

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARD-IFNQMPERDLVSWNAILSA 361
             +    E  +     +V L  + G + EA + +FN     D   W A+L A
Sbjct: 293 MASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGA 344


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/625 (36%), Positives = 352/625 (56%), Gaps = 37/625 (5%)

Query: 167 KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDEL 226
           K    +HC  +K+ T     V   L+ VY K          + +  A ++F      +  
Sbjct: 41  KHVQSIHCHAIKTRTSQDPFVAFELLRVYCKV---------NYIDHAIKLFRCTQNPNVY 91

Query: 227 SWTTMMTGYVK-NDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTY 285
            +T+++ G+V    Y DA   F                        +M+   +  D +  
Sbjct: 92  LYTSLIDGFVSFGSYTDAINLF-----------------------CQMVRKHVLADNYAV 128

Query: 286 TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFN 345
           T+++ AC        GK+VH  +L++        +L     LV LY KCG + +AR +F+
Sbjct: 129 TAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALK----LVELYGKCGVLEDARKMFD 184

Query: 346 QMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKL 405
            MPERD+V+   ++ +    G+++EA  +F  M  R+ + WT++I GL +NG    GL++
Sbjct: 185 GMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEV 244

Query: 406 FSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465
           F +M+++G +P +  F   +++CA LGALE GR +HA +   G + +     ALI MY+R
Sbjct: 245 FREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSR 304

Query: 466 CGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTV 525
           CG ++ A  +F+ +   D  ++N+MI  L  HG    A+EL+ +MLKE + P+ ITF+ V
Sbjct: 305 CGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGV 364

Query: 526 LSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP 585
           L+AC+H GLV  G   FE+M   +GI P  +HY   +D+L R G+  EA D I  +  + 
Sbjct: 365 LNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIGRMGVEA 424

Query: 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645
              +  +LL+ C+IH NI +G + A+ L +     +G++++LSN YA+LGRW  AA VR+
Sbjct: 425 DDKMLCSLLSACKIHKNIGMGEKVAKLLSEHYRIDSGSFIMLSNFYASLGRWSYAAEVRE 484

Query: 646 LMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKF 705
            M   G+ KEPGCS IEV+N +H F   D  HPE + +YK LE+L    +  GY+P T+ 
Sbjct: 485 KMEKGGIIKEPGCSSIEVNNAIHEFFSGDLRHPERKRIYKKLEELNYLTKFEGYLPATEV 544

Query: 706 VLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVG 765
            LHD++ +QKE AL+ HSE+LA+ +GL+      T+RV KNLRIC DCH   K ++K+  
Sbjct: 545 ALHDIDDEQKELALAVHSERLAICYGLVSTEAYTTLRVGKNLRICDDCHAMIKLIAKITR 604

Query: 766 REIVVRDGKRFHHFRDGKCSCGDYW 790
           R+IVVRD  RFHHF +G+CSC DYW
Sbjct: 605 RKIVVRDRNRFHHFENGECSCKDYW 629



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 161/354 (45%), Gaps = 42/354 (11%)

Query: 11  TLANRYA--SQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVY 68
            LA+ YA  + L+ C  +  + S   + VH  ++ SG      I  +L+++Y K   L  
Sbjct: 121 VLADNYAVTAMLKACVLQRALGS--GKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLED 178

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           AR +FD +P+ D+VA T +I +      V+ A E+FN+  +  RDTV +  +I     N 
Sbjct: 179 ARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNE--MGTRDTVCWTMVIDGLVRNG 236

Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL 188
             +  +E+FR+M+   V+P+  TF  VLSA A +   E     +H  + K G  +   V 
Sbjct: 237 EFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELG-RWIHAYMRKCGVEVNRFVA 295

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
            ALI++Y +C           +  A+ +FD +  +D  ++ +M+ G   +     A E  
Sbjct: 296 GALINMYSRCGD---------IDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELF 346

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
                                  +ML  R++ +  T+  V++AC++ GL  LG ++   +
Sbjct: 347 S----------------------EMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESM 384

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
              E     E  +     +V +  + G++ EA D   +M  E D     ++LSA
Sbjct: 385 ---EMIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSA 435


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 255/815 (31%), Positives = 405/815 (49%), Gaps = 121/815 (14%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIP----QPDIVARTTLIAAYSASDNVKLAREMFNKTPL 109
           N  +D++ +S  + +      +I     + DI   T L    S    +  AR++F    +
Sbjct: 21  NNFLDLFKRSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIF--LSV 78

Query: 110 KMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPDNFTFTSVLSALALIVEEEKQ 168
           +  D   +N ++  +S N + H+++ +F  +R+  D+KP++ T+   +SA +   ++   
Sbjct: 79  QRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAG 138

Query: 169 CMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSW 228
           C+ +H   +  G      + + ++ +Y K            +  AR+VFD MPE+D    
Sbjct: 139 CV-IHGQAIVDGCDSELLLGSNIVKMYFKFWR---------VEDARKVFDRMPEKDT--- 185

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRI---------- 278
                                       + WN +ISGY   E+ +  +++          
Sbjct: 186 ----------------------------ILWNTMISGYRKNEMYVESIQVFRDLINESCT 217

Query: 279 QLDEFTYTSVISACANSGLFRLGKQVHA-----------YLL-------------RTEAK 314
           +LD  T   ++ A A     RLG Q+H+           Y+L             +  + 
Sbjct: 218 RLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMAST 277

Query: 315 PTPEFSLP---VNNALVTLYWKCGKVNEARDIFNQM-------PERDLVSW--------- 355
              EF  P     NA++  Y   G+   +  +F ++           LVS          
Sbjct: 278 LFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLML 337

Query: 356 --------------------NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQ 395
                                A+ + Y     I+ A+ LF+   E++L SW  MISG  Q
Sbjct: 338 IYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQ 397

Query: 396 NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSA 455
           NG  E+ + LF +M+   F P        +++CA LGAL  G+ +H  +  + ++SS+  
Sbjct: 398 NGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYV 457

Query: 456 GNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI 515
             ALI MYA+CG +  A  +F+ MP  + V+WN MI+  G HG+G  A+ ++ +ML  GI
Sbjct: 458 STALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGI 517

Query: 516 LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAK 575
            P  +TFL VL AC+HAGLVKEG   F +M   YG  P   HYA  +D+L RAG    A 
Sbjct: 518 APTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRAL 577

Query: 576 DVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLG 635
             I+++P +P   +WE LL  CRIH + +L    +E+LF+L P + G +VLLSN+++   
Sbjct: 578 QFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADR 637

Query: 636 RWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMR 695
            +  AA VR+  + R + K PG + IE+    HVF   D +HP+ +A+++ LE+L  +MR
Sbjct: 638 NYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEKLEGKMR 697

Query: 696 KLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHN 755
           + GY P+T+  LHD+E +++E  +  HSE+LA+AFGL+    G  +R++KNLR+C DCH 
Sbjct: 698 EAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHT 757

Query: 756 AFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           A K +SK+  R IVVRD  RFHHF+DG CSCGDYW
Sbjct: 758 ATKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 127/510 (24%), Positives = 217/510 (42%), Gaps = 123/510 (24%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L   +H+    +G    ++++   I +Y K  K+  A TLF E  +PDIVA   +I  Y+
Sbjct: 239 LGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYT 298

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
           ++   +L                                 ++ LF+++     K  + T 
Sbjct: 299 SNGETEL---------------------------------SLSLFKELMLSGAKLKSSTL 325

Query: 153 TSVLSA---LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
            S++     L LI         +H   +KS     TSV  AL +VY K          + 
Sbjct: 326 VSLVPVSGHLMLI-------YAIHGYSLKSNFLSHTSVSTALTTVYSKL---------NE 369

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           + +AR++FDE PE+   SW  M++GY +N           G++E+        IS     
Sbjct: 370 IESARKLFDESPEKSLPSWNAMISGYTQN-----------GLTEDA-------IS----- 406

Query: 270 ELKMLMLRIQLDEF-----TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
               L   +Q  EF     T T ++SACA  G   LGK VH  +  T+     E S+ V+
Sbjct: 407 ----LFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDF----ESSIYVS 458

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
            AL+ +Y KCG + EAR +F+ MP+++ V+WN ++S Y   GL                 
Sbjct: 459 TALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGY---GL----------------- 498

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
                      +G+G+E L +FS+M   G  P    F   + +C+  G ++ G ++   +
Sbjct: 499 -----------HGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSM 547

Query: 445 VHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGNGAR 502
           +H  G++ S+     ++ +  R G ++ A      MP     S W  ++ A   H +   
Sbjct: 548 IHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNL 607

Query: 503 AIELYEQMLKEGILPDRITFLTVLSACNHA 532
           A  + E++ +  + PD + +  +LS  + A
Sbjct: 608 ARTVSEKLFE--LDPDNVGYHVLLSNIHSA 635


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 247/731 (33%), Positives = 380/731 (51%), Gaps = 77/731 (10%)

Query: 65  KLVYARTL--FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
           ++V+AR +   D  P P +     LI  YS  D+ + AR +   TP   R+ V + ++++
Sbjct: 26  RVVHARIVKTLDSPPPPFLA--NYLINMYSKLDHPESARLVLRLTP--ARNVVSWTSLVS 81

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTG 182
             + N +   A+  F +MRR+ V P++FTF  V  A+A +        Q+H   VK G  
Sbjct: 82  GLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASL-RLPVTGKQIHALAVKCGR- 139

Query: 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLD 242
                   ++ V+V C +        L   AR++FDE+PER+  +W      Y+ N   D
Sbjct: 140 --------ILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNA----YISNSVTD 187

Query: 243 A-AREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
              +E ++   E   +                     Q +  T+   ++AC++  L  LG
Sbjct: 188 GRPKEAIEAFIEFRRIGG-------------------QPNSITFCGFLNACSDGLLLDLG 228

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
            Q+H  + R+      +  + V N L+  Y KC ++  +  IF +               
Sbjct: 229 MQMHGLVFRSGF----DTDVSVYNGLIDFYGKCKQIRSSEIIFAE--------------- 269

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
                           M  +N +SW  +++   QN   E+   L+ + R E  +  D+  
Sbjct: 270 ----------------MGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMI 313

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
           +  +++CAG+  LE GR +HA  V +  + ++  G+AL+ MY +CG +E +   F+ MP 
Sbjct: 314 SSVLSACAGMAGLELGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPE 373

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI--LPDRITFLTVLSACNHAGLVKEGR 539
            + V+ N++I      G    A+ L+E M   G    P+ +TF+++LSAC+ AG V+ G 
Sbjct: 374 KNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGM 433

Query: 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI 599
           + F++M   YGI PG +HY+  +D+L RAG   +A + I  +P KP+  +W AL   CR+
Sbjct: 434 KIFDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWGALQNACRM 493

Query: 600 HGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCS 659
           HG   LGI AAE LF+L P  +G +VLLSN +A  GRW +A  VR+ M+  G+KK  G S
Sbjct: 494 HGKPHLGILAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREEMKGVGIKKGAGYS 553

Query: 660 WIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYAL 719
           WI V N+VH F   D +H   + +   L +L  +M   GY PD K  L+D+E ++K   +
Sbjct: 554 WITVKNQVHAFQAKDRSHKMNKEIQTMLTKLRNKMEAAGYKPDLKLSLYDLEEEEKAAEV 613

Query: 720 STHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHF 779
           S HSEKLA+AFGL+ LP    +R+ KNLRICGDCH+ FKF+S  V REI+VRD  RFH F
Sbjct: 614 SHHSEKLALAFGLVALPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRF 673

Query: 780 RDGKCSCGDYW 790
           +DG CSC DYW
Sbjct: 674 KDGICSCKDYW 684



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 110/249 (44%), Gaps = 38/249 (15%)

Query: 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAI 358
           RLG+ VHA +++T   P P F   + N L+ +Y K      AR +    P R++VSW   
Sbjct: 23  RLGRVVHARIVKTLDSPPPPF---LANYLINMYSKLDHPESARLVLRLTPARNVVSW--- 76

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
                                       T ++SGLAQNG+    L  F +MR EG  P D
Sbjct: 77  ----------------------------TSLVSGLAQNGHFSTALFEFFEMRREGVAPND 108

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478
           + F     + A L     G+Q+HA  V  G    +  G +   MY +  + + A  +F+ 
Sbjct: 109 FTFPCVFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDE 168

Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG 538
           +P  +  +WNA I+     G    AIE + +  + G  P+ ITF   L+AC+   L+  G
Sbjct: 169 IPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLG 228

Query: 539 RRYFETMHG 547
            +    MHG
Sbjct: 229 MQ----MHG 233



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 132/332 (39%), Gaps = 71/332 (21%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L   +H  +  SGF     + N LID Y K  ++  +  +F E+   + V+  +L+A   
Sbjct: 227 LGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVA--- 283

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                         AY  N     A  L+   R++ V+  +F  
Sbjct: 284 ------------------------------AYVQNHEDEKASVLYLRSRKEIVETSDFMI 313

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
           +SVLSA A +   E     +H   VK+       V +AL+ +Y KC           +  
Sbjct: 314 SSVLSACAGMAGLELG-RSIHAHAVKACVERNIFVGSALVDMYGKC---------GCIED 363

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS-ENVGVAWNALISGYVHREL 271
           + + FDEMPE++ ++  +++ GY     +D A    + M+    G A N +         
Sbjct: 364 SEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYM--------- 414

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVTL 330
                       T+ S++SAC+ +G    G ++   +  T   +P  E      + +V +
Sbjct: 415 ------------TFVSLLSACSRAGAVENGMKIFDSMKSTYGIEPGAEHY----SCIVDM 458

Query: 331 YWKCGKVNEARDIFNQMPERDLVS-WNAILSA 361
             + G V +A +   +MP +  +S W A+ +A
Sbjct: 459 LGRAGMVEQAFEFIKKMPIKPTISVWGALQNA 490


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/638 (37%), Positives = 366/638 (57%), Gaps = 49/638 (7%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           Q+H   +KSG    T     ++     C +S  +  R L   A ++F++MP+R+  SW T
Sbjct: 34  QIHAVFIKSGQIRDTLAAAEILRF---CATSD-LHHRDL-DYAHKIFNQMPQRNCFSWNT 88

Query: 231 MMTGYVKNDY---LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTS 287
           ++ G+ ++D    L A   F + MS+                        I+ + FT+ S
Sbjct: 89  IIRGFSESDEDKALIAITLFCEMMSDEF----------------------IEPNRFTFPS 126

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF-NQ 346
           V+ ACA +G  + GKQ+H   L+       EF   V + LV +Y  CG + +A  +F   
Sbjct: 127 VLKACAKTGKIQQGKQIHGLALKY-GFGGDEF---VMSNLVRMYVICGLMKDACVLFYKN 182

Query: 347 MPERDLVS-------------WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
           + ER++V              WN ++  Y+  G    A+ LF+ MR+R+++SW  MISG 
Sbjct: 183 IIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGY 242

Query: 394 AQNGYGEEGLKLFSQMRL-EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
           +QNG+ ++ +++F +M+  E  +P        + + + LG+LE G  LH     SG    
Sbjct: 243 SQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRID 302

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
              G+ALI MY++CG++E A  VF  +P  + ++W+AMI     HG    AI+ + +M +
Sbjct: 303 DVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQ 362

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
            G+ P  + ++ +L+AC+HAGLV+EGRRYF  M    G+ P  +HY   +DLL R G   
Sbjct: 363 AGVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLD 422

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632
           EA++ I ++P KP   IW+ALL  CR+H N+++G + A  L  ++PH +G YV LSNMYA
Sbjct: 423 EAEEFILNMPIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYA 482

Query: 633 NLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVL 692
           + G W + + +R  M++  ++K+PGCSWI++D  +H FLV+D +HP A+ +   L ++  
Sbjct: 483 SQGNWSEVSEMRLRMKEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPRAKEINSMLVEISD 542

Query: 693 EMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGD 752
           ++R  GY P T  VL ++E + KE AL  HSEK+A AFGL+    G  +R++KNLRIC D
Sbjct: 543 KLRLAGYRPITTQVLLNLEEEDKENALHYHSEKMATAFGLISTSPGKPIRIVKNLRICED 602

Query: 753 CHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           CH++ K +SKV  R+I VRD KRFHHF+DG CSC DYW
Sbjct: 603 CHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 640



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 116/449 (25%), Positives = 198/449 (44%), Gaps = 72/449 (16%)

Query: 80  DIVARTTLIAAYSASD----NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA--A 133
           D +A   ++   + SD    ++  A ++FN+ P   R+   +N +I  +S +    A  A
Sbjct: 47  DTLAAAEILRFCATSDLHHRDLDYAHKIFNQMP--QRNCFSWNTIIRGFSESDEDKALIA 104

Query: 134 IELFRDMRRDD-VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           I LF +M  D+ ++P+ FTF SVL A A    + +Q  Q+H   +K G G    V++ L+
Sbjct: 105 ITLFCEMMSDEFIEPNRFTFPSVLKACAK-TGKIQQGKQIHGLALKYGFGGDEFVMSNLV 163

Query: 193 SVYVKC---------VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDA 243
            +YV C              +    +M   RR  D     + + W  M+ GY++     A
Sbjct: 164 RMYVICGLMKDACVLFYKNIIEREMVMMIDRRKRDG----EVVLWNVMIDGYMRLGDCKA 219

Query: 244 AREFLDGMSENVGVAWNALISGY-----------VHRELKMLMLRIQLDEFTYTSVISAC 292
           AR   D M +   V+WN +ISGY           V RE+K     I+ +  T  SV+ A 
Sbjct: 220 ARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKK-GEDIRPNYVTLVSVLPAV 278

Query: 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL 352
           +  G   LG+ +H Y   +  +        + +AL+ +Y KCG + +A  +F ++P  ++
Sbjct: 279 SRLGSLELGEWLHLYAEDSGIR----IDDVLGSALIDMYSKCGIIEKAIMVFERLPRENV 334

Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
           ++W+A                               MI+G A +G   + +  F +MR  
Sbjct: 335 ITWSA-------------------------------MINGFAIHGQAGDAIDCFCKMRQA 363

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH-SGYDSSLSA-GNALITMYARCGVVE 470
           G +P D A+   +T+C+  G +E GR+  +Q+V   G +  +   G  +  +     + E
Sbjct: 364 GVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDE 423

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           A   + N     D V W A++ A   H N
Sbjct: 424 AEEFILNMPIKPDDVIWKALLGACRMHRN 452


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/710 (33%), Positives = 379/710 (53%), Gaps = 81/710 (11%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           L+  Y+    V  A  +F +  +  +D + +N+M++ Y  N     AIE   +M R   +
Sbjct: 306 LLVMYTKCGRVDSALRVFRE--IDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQ 363

Query: 147 PDNFTFTSVLSALA----LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSP 202
           PD+    S+ SA+     L+  +E     +H   +K      T V N L+ +Y+KC    
Sbjct: 364 PDHACIVSLSSAVGHLGWLLNGKE-----VHAYAIKQRLDSDTQVGNTLMDMYMKCRYIE 418

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND-YLDAAREFLDGMSENVGVAWNA 261
           +         +  VFD M  +D +SWTT++T Y ++  +++A   F +   E        
Sbjct: 419 Y---------SAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEG------- 462

Query: 262 LISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
                           I++D     S++ AC+      L KQ+H Y +R           
Sbjct: 463 ----------------IKVDPMMIGSILEACSGLETILLAKQLHCYAIR----------- 495

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
              N L+                      DLV  N I+  Y   G +  +  +FE + ++
Sbjct: 496 ---NGLL----------------------DLVVKNRIIDIYGECGEVYHSLKMFETVEQK 530

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
           ++++WT MI+  A +G   E L LF++M+    +P   A    + +  GL +L  G+++H
Sbjct: 531 DIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVH 590

Query: 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGA 501
             L+   +    +  ++L+ MY+ CG +  A  VFN +   D V W AMI A G HG+G 
Sbjct: 591 GFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGK 650

Query: 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF 561
           +AI+L+++ML+ G+ PD ++FL +L AC+H+ LV EG+ Y + M   Y + P ++HYA  
Sbjct: 651 QAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACV 710

Query: 562 IDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621
           +DLL R+G+  EA + I S+P KP + +W +LL  CR+H N +L + AA +L +L P + 
Sbjct: 711 VDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPDNP 770

Query: 622 GTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQ 681
           G YVL+SN++A +G+W++A  VR  + +RG++K+P CSWIE+ N VH F   D +H +A+
Sbjct: 771 GNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGNNVHTFTTRDNSHRDAE 830

Query: 682 AVYKYLEQLVLEMRKL-GYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT 740
            +   L ++   +RK  GY  DT+ VLHD+  ++K   L  HSE+LA++FGL+    G  
Sbjct: 831 RINLKLAEITERLRKEGGYTEDTRSVLHDVSEEEKVDVLHRHSERLAISFGLINTRPGMP 890

Query: 741 VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +R+ KNLR+CGDCH   K +SK+  R+IVVRD  RFHHF  G CSCGD+W
Sbjct: 891 LRIAKNLRVCGDCHEFTKLVSKLFDRDIVVRDANRFHHFSGGSCSCGDFW 940



 Score =  182 bits (463), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 132/452 (29%), Positives = 211/452 (46%), Gaps = 78/452 (17%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMR--- 141
           T L+  Y     V  AR +F+   +  R    +NA+I AY  + +   A+ ++R MR   
Sbjct: 99  TKLLFMYGKCGRVADARLLFDG--MSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSA 156

Query: 142 RDDVKPDNFTFTSVLSALALIVEEEKQC-MQMHCTVVKSGTGLFTSVLNALISVYVKCVS 200
              V PD  T  SVL A    VE + +C  ++H   VK G    T V NALI++Y KC  
Sbjct: 157 ASGVAPDGCTLASVLKASG--VEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKC-- 212

Query: 201 SPFVSSRSLMGAARRVFDEMPE-RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                   ++ +A RVF+ M + RD  SW +M++G ++N     A +   GM   V    
Sbjct: 213 -------GILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAV---- 261

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                             + ++ +T   V+  C       LG+++HA LL++ ++   + 
Sbjct: 262 ------------------LSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQC 303

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
                NAL+ +Y KCG+V+ A  +F ++ E+D +SWN++LS YV                
Sbjct: 304 -----NALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYV---------------- 342

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG-LGALENGR 438
                          QNG   E ++  S+M   GF+P D+A   +++S  G LG L NG+
Sbjct: 343 ---------------QNGLYAEAIEFISEMLRGGFQP-DHACIVSLSSAVGHLGWLLNGK 386

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           ++HA  +    DS    GN L+ MY +C  +E +  VF+ M   D +SW  +I    Q  
Sbjct: 387 EVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSS 446

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACN 530
               A+E++ +  KEGI  D +   ++L AC+
Sbjct: 447 RHIEALEIFREAQKEGIKVDPMMIGSILEACS 478



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 125/521 (23%), Positives = 219/521 (42%), Gaps = 79/521 (15%)

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ 171
           RD   +N+MI+    N     A++LFR M+R  +  +++T   VL     + +      +
Sbjct: 229 RDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLG-RE 287

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H  ++KSG+ +     NAL+ +Y KC           + +A RVF E+ E+D +SW +M
Sbjct: 288 LHAALLKSGSEVNIQC-NALLVMYTKC---------GRVDSALRVFREIDEKDYISWNSM 337

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           ++ YV+N     A EF+                       +ML    Q D     S+ SA
Sbjct: 338 LSCYVQNGLYAEAIEFIS----------------------EMLRGGFQPDHACIVSLSSA 375

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
             + G    GK+VHAY ++       +    V N L+ +Y KC  +  +  +F++M  +D
Sbjct: 376 VGHLGWLLNGKEVHAYAIKQRLDSDTQ----VGNTLMDMYMKCRYIEYSAHVFDRMRIKD 431

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
            +SW  I++ Y                               AQ+    E L++F + + 
Sbjct: 432 HISWTTIITCY-------------------------------AQSSRHIEALEIFREAQK 460

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
           EG K         + +C+GL  +   +QLH   + +G    L   N +I +Y  CG V  
Sbjct: 461 EGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGL-LDLVVKNRIIDIYGECGEVYH 519

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
           +  +F T+   D V+W +MI      G    A+ L+ +M    + PD +  +++L A   
Sbjct: 520 SLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGG 579

Query: 532 AGLVKEGRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
              + +G+     +HG          E   +  +D+    G  S A  V +++  K    
Sbjct: 580 LSSLAKGKE----VHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMV- 634

Query: 589 IWEALLAGCRIHGNIDLGIQAAEQLFQ--LMPHHAGTYVLL 627
           +W A++    +HG+    I   +++ Q  + P H     LL
Sbjct: 635 LWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALL 675



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/324 (30%), Positives = 150/324 (46%), Gaps = 49/324 (15%)

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY-----------VHRELKMLMLR 277
           T ++  Y K   +  AR   DGMS     +WNALI  Y           V+R +++    
Sbjct: 99  TKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAAS 158

Query: 278 -IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
            +  D  T  SV+ A    G  R G +VH   +    K   + S  V NAL+ +Y KCG 
Sbjct: 159 GVAPDGCTLASVLKASGVEGDGRCGCEVHGLAV----KHGLDRSTFVANALIAMYAKCGI 214

Query: 337 VNEARDIFNQMPE-RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQ 395
           ++ A  +F  M + RD+ SWN+++S  +  G+  +A  LF  M +R +LS          
Sbjct: 215 LDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGM-QRAVLSMN-------- 265

Query: 396 NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSA 455
                                  Y   G +  C  L  L  GR+LHA L+ SG + ++  
Sbjct: 266 ----------------------SYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQC 303

Query: 456 GNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI 515
            NAL+ MY +CG V++A  VF  +   D +SWN+M++   Q+G  A AIE   +ML+ G 
Sbjct: 304 -NALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGF 362

Query: 516 LPDRITFLTVLSACNHAGLVKEGR 539
            PD    +++ SA  H G +  G+
Sbjct: 363 QPDHACIVSLSSAVGHLGWLLNGK 386



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 118/240 (49%), Gaps = 31/240 (12%)

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           G QVHA+ + T +    +  L     L+ +Y KCG+V +AR +F+ M  R + SWNA++ 
Sbjct: 77  GVQVHAHAVATGSLEGDDGFLATK--LLFMYGKCGRVADARLLFDGMSSRTVFSWNALIG 134

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
           AY+S+G   EA  ++ AMR    LS        A +G   +G  L S ++  G +     
Sbjct: 135 AYLSSGSACEALGVYRAMR----LS--------AASGVAPDGCTLASVLKASGVE----- 177

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
                      G    G ++H   V  G D S    NALI MYA+CG++++A  VF  M 
Sbjct: 178 -----------GDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMH 226

Query: 481 N-VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
           +  D  SWN+MI+   Q+G   +A++L+  M +  +  +  T + VL  C     +  GR
Sbjct: 227 DGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGR 286



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 99/488 (20%), Positives = 191/488 (39%), Gaps = 107/488 (21%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + VHA+ I         + N L+D+Y K   + Y+  +FD                   
Sbjct: 385 GKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDR------------------ 426

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                          ++++D + +  +IT Y+ +S    A+E+FR+ +++ +K D     
Sbjct: 427 ---------------MRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIG 471

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           S+L A + + E      Q+HC  +++G  L   V N +I +Y +C           +  +
Sbjct: 472 SILEACSGL-ETILLAKQLHCYAIRNGL-LDLVVKNRIIDIYGEC---------GEVYHS 520

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
            ++F+ + ++D ++WT+M+  Y  +  L+ A      M                      
Sbjct: 521 LKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQST------------------- 561

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
               +Q D     S++ A         GK+VH +L+R            + ++LV +Y  
Sbjct: 562 ---DVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNF----HMEEAIVSSLVDMYSG 614

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
           CG ++ A  +FN +  +D+V W                               T MI+  
Sbjct: 615 CGSLSGALKVFNAVKCKDMVLW-------------------------------TAMINAT 643

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY--DS 451
             +G+G++ + LF +M   G  P   +F   + +C+    L N  + +  ++ S Y  + 
Sbjct: 644 GMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSH-SKLVNEGKCYLDMMMSTYRLEP 702

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQM 510
                  ++ +  R G  E A     +MP    SV W +++ A   H N   A+    ++
Sbjct: 703 WQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRL 762

Query: 511 LKEGILPD 518
           L+  + PD
Sbjct: 763 LE--LEPD 768


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/622 (37%), Positives = 355/622 (57%), Gaps = 68/622 (10%)

Query: 170 MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWT 229
           M  H  +++ G    T   N L+++Y KC          L+ +AR++FDEMP R  +SW 
Sbjct: 67  MACHAQIIRVGLRADTITSNMLMNMYSKC---------GLVESARKLFDEMPVRSLVSWN 117

Query: 230 TMMTGYVKN-DYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSV 288
           TM+  + +N D   A   F+    E    +                       EFT +SV
Sbjct: 118 TMVGSHTQNGDCEKALVLFMQMQKEGTSCS-----------------------EFTVSSV 154

Query: 289 ISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
           + ACA        KQ+H + L+T      + ++ V  AL+ +Y KCG             
Sbjct: 155 VCACAAKCCVFECKQLHGFALKT----ALDSNVFVGTALLDVYAKCG------------- 197

Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQ 408
                             L+ +A  +FE M ER+ ++W+ M++G  QN   EE L LF +
Sbjct: 198 ------------------LVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHR 239

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
            +  G +   +  + A+++CA   AL  G+Q+ A    +G  S++   ++LI MYA+CG+
Sbjct: 240 AQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGI 299

Query: 469 VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
           +E A  VF+++   + V WNA+++   +H     A+  +E+M + GI P+ IT+++VLSA
Sbjct: 300 IEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSA 359

Query: 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
           C+H GLV++GR+YF+ M   + + P   HY+  +D+L RAG   EAKD ID +PF  +A 
Sbjct: 360 CSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATAS 419

Query: 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648
           +W +LLA CRI+ N++L   AA+ LF++ PH+AG +VLLSN+YA   RW++ AR R L++
Sbjct: 420 MWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLK 479

Query: 649 DRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLH 708
           +   KKE G SWIE+ +KVH F+V +  HP    +Y  LE LV EM+K+GY   T+  LH
Sbjct: 480 ESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLH 539

Query: 709 DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREI 768
           D+E  +K+  L  HSEKLA+ FG+M LP GA +R++KNLRICGDCH+  K  S +  REI
Sbjct: 540 DVEESRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREI 599

Query: 769 VVRDGKRFHHFRDGKCSCGDYW 790
           +VRD  RFHHF++G CSCG++W
Sbjct: 600 IVRDTNRFHHFKNGYCSCGEFW 621



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 128/513 (24%), Positives = 226/513 (44%), Gaps = 103/513 (20%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + D +    L+  YS    V+ AR++F++ P+  R  V +N M+ +++ N +   A+ LF
Sbjct: 79  RADTITSNMLMNMYSKCGLVESARKLFDEMPV--RSLVSWNTMVGSHTQNGDCEKALVLF 136

Query: 138 RDMRRDDVKPDNFTFTSVLSALA---LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
             M+++      FT +SV+ A A    + E    C Q+H   +K+       V  AL+ V
Sbjct: 137 MQMQKEGTSCSEFTVSSVVCACAAKCCVFE----CKQLHGFALKTALDSNVFVGTALLDV 192

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           Y KC          L+  A  VF+ MPER +++W++M+ GYV+N+  + A          
Sbjct: 193 YAKC---------GLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLF------ 237

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
                        HR   M    ++ ++FT +S +SACA       GKQV A   +T   
Sbjct: 238 -------------HRAQAM---GLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIG 281

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
                ++ V ++L+ +Y KCG + EA  +F+ + E+++V WNAILS +            
Sbjct: 282 S----NIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGF------------ 325

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
                 R++ S   MI               F +M+  G  P D  +   +++C+ LG +
Sbjct: 326 -----SRHVRSLEAMI--------------YFEKMQQMGICPNDITYISVLSACSHLGLV 366

Query: 435 ENGRQLHAQL--VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMI 491
           E GR+    +  VH+   + L   + ++ +  R G++  A    + MP +  +  W +++
Sbjct: 367 EKGRKYFDLMIRVHNVSPNVLHY-SCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLL 425

Query: 492 AALGQHGNGARAIELYEQMLKE--GILPDRI---TFLTVLSACNH--------AGLVKE- 537
           A+   +    R +EL E   K    I P        L+ + A N           L+KE 
Sbjct: 426 ASCRIY----RNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKES 481

Query: 538 ------GRRYFETMHGPYGIPPGEDHYARFIDL 564
                 G+ + E  H  +    GE ++ R +++
Sbjct: 482 KAKKERGKSWIEIKHKVHSFMVGERNHPRIVEI 514



 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 137/296 (46%), Gaps = 37/296 (12%)

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           G   HA ++R   +         +N L+ +Y KCG V  AR +F++MP R LVSWN    
Sbjct: 66  GMACHAQIIRVGLRADT----ITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNT--- 118

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
                                       M+    QNG  E+ L LF QM+ EG    ++ 
Sbjct: 119 ----------------------------MVGSHTQNGDCEKALVLFMQMQKEGTSCSEFT 150

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
            +  + +CA    +   +QLH   + +  DS++  G AL+ +YA+CG+V+ AN VF  MP
Sbjct: 151 VSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMP 210

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
               V+W++M+A   Q+     A+ L+ +    G+  ++ T  + LSAC     + EG++
Sbjct: 211 ERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQ 270

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
             + +    GI       +  ID+  + G   EA  V  S+  K +  +W A+L+G
Sbjct: 271 -VQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEK-NVVLWNAILSG 324



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 146/349 (41%), Gaps = 77/349 (22%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           + +H   + +       +   L+D+Y K   +  A  +F+ +P+                
Sbjct: 168 KQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPE---------------- 211

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
                            R  V +++M+  Y  N     A+ LF   +   ++ + FT +S
Sbjct: 212 -----------------RSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISS 254

Query: 155 VLSALALIVE--EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            LSA A      E KQ   + C   K+G G    V+++LI +Y KC          ++  
Sbjct: 255 ALSACAARAALIEGKQVQAVSC---KTGIGSNIFVISSLIDMYAKC---------GIIEE 302

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A  VF  + E++ + W  +++G+ ++     A  + + M + +G+  N            
Sbjct: 303 AYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKM-QQMGICPN------------ 349

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                    + TY SV+SAC++ GL   G++    ++R     +P  ++   + +V +  
Sbjct: 350 ---------DITYISVLSACSHLGLVEKGRKYFDLMIRVH-NVSP--NVLHYSCMVDILG 397

Query: 333 KCGKVNEARDIFNQMPERDLVS-WNAILSA---YVSAGLID-EAKSLFE 376
           + G ++EA+D  ++MP     S W ++L++   Y +  L +  AK LFE
Sbjct: 398 RAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFE 446


>gi|302765332|ref|XP_002966087.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
 gi|300166901|gb|EFJ33507.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
          Length = 449

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/435 (47%), Positives = 282/435 (64%)

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           NA+L+ YV  G ++EA+ +F+AM   +  SWT MI+   +N    E L+LF +M LEG  
Sbjct: 15  NALLNMYVRCGSLEEARKVFDAMDHPDAFSWTNMITACTENCELLEALELFHRMNLEGIP 74

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P     A  + +CA  GAL+ G+Q+H++L  SG+ SS+ A  AL+ MYA+CG +E ++ V
Sbjct: 75  PTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKV 134

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           F  M   +SVSW AMIAAL QHG G  A+EL+++M  EG++ D  TF+ VL AC+HAGL+
Sbjct: 135 FTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLI 194

Query: 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
           KE   +F +M   Y I P E HY R +D + RAG+  +A+++I S+PF P    W+ LL 
Sbjct: 195 KESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETVTWKTLLN 254

Query: 596 GCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKE 655
            CRIH   +   + AE L +L P  +  Y LL N+YA   R+ D  RVRK M DRG+KK 
Sbjct: 255 ACRIHSQAERATKVAELLAKLAPEDSMAYTLLGNVYAATERYGDQMRVRKSMTDRGLKKV 314

Query: 656 PGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQK 715
           PG S+IEV NKVH F+  D AHP    +   LE+L   MR+ GYVP+TK VLH +  ++K
Sbjct: 315 PGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLHAVNEEEK 374

Query: 716 EYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKR 775
           E  +  HSEKLA+AFGL+  P G  + ++KNLR+C DCH A K ++K++ R IVVRD  R
Sbjct: 375 EQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRIVVRDTHR 434

Query: 776 FHHFRDGKCSCGDYW 790
           FHHF DG+CSC DYW
Sbjct: 435 FHHFEDGQCSCKDYW 449



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 140/330 (42%), Gaps = 76/330 (23%)

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           NAL+++YV+C S         +  AR+VFD M   D  SWT M+T   +N  L  A E  
Sbjct: 15  NALLNMYVRCGS---------LEEARKVFDAMDHPDAFSWTNMITACTENCELLEALELF 65

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
                              HR   M +  I     T  SV++ACA SG  ++GKQ+H+ L
Sbjct: 66  -------------------HR---MNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRL 103

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
             +        S+    AL+ +Y KCG +  +  +F  M  R+ VSW A+++A    G  
Sbjct: 104 DASGFHS----SVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQG 159

Query: 369 DEAKSLFEAMRERNLL----SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
           DEA  LF+ M    ++    ++  ++   +  G  +E L+ F  M +E     DYA A  
Sbjct: 160 DEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSM-VE-----DYAIAPT 213

Query: 425 ITS-CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NV 482
            T  C  L  +                              R G ++ A  + ++MP + 
Sbjct: 214 ETHYCRALDTI-----------------------------GRAGRLQDAEELIHSMPFHP 244

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           ++V+W  ++ A   H    RA ++ E + K
Sbjct: 245 ETVTWKTLLNACRIHSQAERATKVAELLAK 274



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 127/291 (43%), Gaps = 44/291 (15%)

Query: 75  EIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAI 134
           E+   + +    L+  Y    +++ AR++F+   +   D   +  MITA + N     A+
Sbjct: 5   ELKSSNAILENALLNMYVRCGSLEEARKVFD--AMDHPDAFSWTNMITACTENCELLEAL 62

Query: 135 ELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL--NALI 192
           ELF  M  + + P + T  SVL+A A      K   Q+H  +    +G  +SVL   AL+
Sbjct: 63  ELFHRMNLEGIPPTSVTLASVLNACA-CSGALKVGKQIHSRL--DASGFHSSVLAQTALL 119

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
            +Y KC S         +  + +VF  M  R+ +SWT M+    ++   D A E    M+
Sbjct: 120 DMYAKCGS---------LECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMN 170

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ-VHAYLLRT 311
                     + G V             D  T+  V+ AC+++GL +   +  H+ +   
Sbjct: 171 ----------LEGMV------------ADATTFICVLRACSHAGLIKESLEFFHSMVEDY 208

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
              PT         AL T+  + G++ +A ++ + MP   + V+W  +L+A
Sbjct: 209 AIAPTETHYC---RALDTI-GRAGRLQDAEELIHSMPFHPETVTWKTLLNA 255



 Score = 47.4 bits (111), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 54/281 (19%), Positives = 117/281 (41%), Gaps = 29/281 (10%)

Query: 81  IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
           ++A+T L+  Y+   +++ + ++F  T ++ R++V + AMI A + +  G  A+ELF++M
Sbjct: 112 VLAQTALLDMYAKCGSLECSSKVF--TAMETRNSVSWTAMIAALAQHGQGDEALELFKEM 169

Query: 141 RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVS 200
             + +  D  TF  VL A +            H  ++K     F S++       +    
Sbjct: 170 NLEGMVADATTFICVLRACS------------HAGLIKESLEFFHSMVE---DYAIAPTE 214

Query: 201 SPFVSSRSLMGAARRVFD------EMPERDE-LSWTTMMTG---YVKNDYLDAAREFLDG 250
           + +  +   +G A R+ D       MP   E ++W T++     + + +      E L  
Sbjct: 215 THYCRALDTIGRAGRLQDAEELIHSMPFHPETVTWKTLLNACRIHSQAERATKVAELLAK 274

Query: 251 MSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
           ++    +A+  L + Y   E     +R++  +      +          +  +VH ++  
Sbjct: 275 LAPEDSMAYTLLGNVYAATERYGDQMRVR--KSMTDRGLKKVPGKSFIEVKNKVHEFVAG 332

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
             A P+ +  L     L     + G V   +D+ + + E +
Sbjct: 333 DRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLHAVNEEE 373


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/681 (34%), Positives = 377/681 (55%), Gaps = 74/681 (10%)

Query: 151 TFTSVLSALALIVEEEKQCM-------QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
           T TS LS  A++     QC        Q H  ++++G    + +  +L+  Y    ++ +
Sbjct: 25  TETSKLSHKAILHLLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRY 84

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
           +S  S +    RVFD + + +   W  M+   ++N+                   + A++
Sbjct: 85  LSFESSL----RVFDFVRKPNVFLWNCMIKVCIENNE-----------------PFKAIL 123

Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
             Y     +M++   + +++TY +V+ AC+++G+   G QVHA+L++            +
Sbjct: 124 LYY-----EMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGH----I 174

Query: 324 NNALVTLYWKCGKVNEARDIFN-QMPERDLVSWNAILSAYVSAGLIDEAKSLFEA----- 377
            ++ + +Y   G++ EAR I + +  E D V WNA++  Y+  G ++ A+ LFE      
Sbjct: 175 LSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRS 234

Query: 378 ---------------------------MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
                                      M+ER+ +SW+ MI G  Q G   E L++F QM+
Sbjct: 235 MISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQ 294

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
            E  +P  +     +++CA LGAL+ GR +H     +        G +L+ MYA+CG ++
Sbjct: 295 KEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRID 354

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
            A  VF  M N +  SWNAMI  L  HG    AI+L+ +M    I P+ ITF+ VL+AC 
Sbjct: 355 LAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITFVGVLNACA 411

Query: 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590
           H GLV++G   F +M   YG+ P  +HY   +DLL RAG  +EA+ V+ S+P +P+  +W
Sbjct: 412 HGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVW 471

Query: 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650
            ALL  CR HGN++LG +  + L +L P ++G Y LLSN+YA  GRW++   VRKLM++R
Sbjct: 472 GALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKER 531

Query: 651 GVKKEPGCSWIEVD-NKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHD 709
           G+K  PG S I++   +VH F++ D +HP+ + +Y+ L+++   ++  GY PD   VL D
Sbjct: 532 GIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFD 591

Query: 710 MESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIV 769
           ++ ++KE A+  HSEKLA+ FGL+    G T+R++KNLR+C DCH+A K +S+V  REI+
Sbjct: 592 IDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREII 651

Query: 770 VRDGKRFHHFRDGKCSCGDYW 790
           VRD  R+HHFR+G CSC D+W
Sbjct: 652 VRDRIRYHHFRNGACSCKDFW 672



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 135/537 (25%), Positives = 237/537 (44%), Gaps = 105/537 (19%)

Query: 30  TSSLARSVHAHMISSGFKPRE---------HIINRLIDIYCKSLKLVYARTLFDEIPQPD 80
           T++ A   H H+I +G              H++N         LK  +A  L     Q  
Sbjct: 7   TATEAPYHHHHLIPNGHSTETSKLSHKAILHLLNTQCTTSLHHLKQAHALILRTGHLQDS 66

Query: 81  IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTV------FYNAMITAYSHNSNGHAAI 134
            +A  +L+ +Y+   NV   R +  ++ L++ D V       +N MI     N+    AI
Sbjct: 67  YIA-GSLVKSYA---NVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAI 122

Query: 135 ELFRDMRRDDVKPDNFTFTSVLSAL--ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
            L+ +M     +P+ +T+ +VL A   A +V E    +Q+H  +VK G G    +L++ I
Sbjct: 123 LLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAE---GVQVHAHLVKHGLGGDGHILSSAI 179

Query: 193 SVYVKCVSSPFVSSRSLMG-------------------------AARRVFDEMPERDELS 227
            +Y        V +R ++                          AAR +F+ MP+R  +S
Sbjct: 180 RMYASF--GRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMIS 237

Query: 228 -WTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLML---------R 277
            W  M++G+ +   ++ AREF D M E   ++W+A+I GY+     M  L         +
Sbjct: 238 TWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEK 297

Query: 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
           I+  +F   SV+SACAN G    G+ +H Y  R     + +    +  +LV +Y KCG++
Sbjct: 298 IRPRKFVLPSVLSACANLGALDQGRWIHTYAKRN----SIQLDGVLGTSLVDMYAKCGRI 353

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNG 397
           + A ++F +M  +++ SWNA                               MI GLA +G
Sbjct: 354 DLAWEVFEKMSNKEVSSWNA-------------------------------MIGGLAMHG 382

Query: 398 YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAG 456
             E+ + LFS+M +    P +  F G + +CA  G ++ G  +   +    G +  +   
Sbjct: 383 RAEDAIDLFSKMDI---NPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHY 439

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGNGARAIELYEQMLK 512
             ++ +  R G++  A  V +++P   + + W A++ A  +HGN    +EL E++ K
Sbjct: 440 GCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGN----VELGERVGK 492



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 98/435 (22%), Positives = 175/435 (40%), Gaps = 75/435 (17%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y + L+ C     +   +   VHAH++  G     HI++  I +Y    +LV AR + D+
Sbjct: 140 YPAVLKACSDAGVVAEGV--QVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDD 197

Query: 76  IP-QPDIVARTTLIAAYSASDNVKLAREMFNKTP-------------------------- 108
              + D V    +I  Y     V+ ARE+F   P                          
Sbjct: 198 KGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVARE 257

Query: 109 ----LKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE 164
               +K RD + ++AMI  Y        A+E+F  M+++ ++P  F   SVLSA A +  
Sbjct: 258 FFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGA 317

Query: 165 EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERD 224
            + Q   +H    ++   L   +  +L+ +Y KC           +  A  VF++M  ++
Sbjct: 318 LD-QGRWIHTYAKRNSIQLDGVLGTSLVDMYAKC---------GRIDLAWEVFEKMSNKE 367

Query: 225 ELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFT 284
             SW  M+ G   +   + A +    M                          I  +E T
Sbjct: 368 VSSWNAMIGGLAMHGRAEDAIDLFSKMD-------------------------INPNEIT 402

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           +  V++ACA+ GL + G  +    +R E    P+  +     +V L  + G + EA  + 
Sbjct: 403 FVGVLNACAHGGLVQKGLTIFNS-MRKEYGVEPQ--IEHYGCIVDLLGRAGLLTEAEKVV 459

Query: 345 NQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE---RNLLSWTVMISGLAQNGYGE 400
           + +P E     W A+L A    G ++  + + + + E   +N   +T++ +  A+ G  E
Sbjct: 460 SSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWE 519

Query: 401 EGLKLFSQMRLEGFK 415
           E  ++   M+  G K
Sbjct: 520 EVGEVRKLMKERGIK 534


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/573 (38%), Positives = 335/573 (58%), Gaps = 46/573 (8%)

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE---------LKMLMLRIQ 279
           T ++  Y K D L  ARE  D M +   V+W A+IS Y  R          ++ML    +
Sbjct: 129 TRLIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTE 188

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            + FT+ +++++C  S  F  G+Q+H+  +    K   E  + V ++L+ +Y K G+   
Sbjct: 189 PNHFTFATILTSCYGSLGFETGRQIHSIAI----KRNYESHMFVGSSLLDMYAKSGR--- 241

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
                                       I +A  +F  + ER++++ T +ISG AQ G  
Sbjct: 242 ----------------------------ICDAHGVFHCLPERDVVACTAIISGYAQMGLD 273

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
           EE LKLF Q+++EG       +A  +T+ +GL AL +G+Q+H+ ++ SG  S +   N+L
Sbjct: 274 EEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSL 333

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG-ILPD 518
           I MY++CG V  A  +F++MP    +SWNAM+    +HG     +EL++ M +E  + PD
Sbjct: 334 IDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPD 393

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETM-HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577
            IT+L VLS C+H  L   G   F  M +G  GI P   HY   +DLL RAG+  EA D 
Sbjct: 394 SITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDF 453

Query: 578 IDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRW 637
           I  +PF P+A IW +LL  CR+H ++++GI   ++L +L P +AG YV+LSN+YA+ G+W
Sbjct: 454 IKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKW 513

Query: 638 DDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKL 697
           +D   +R LM+++ V KEPG SW+E+D  VH F   D  HP  + V K +++L ++ ++ 
Sbjct: 514 EDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVAKKVKELSIKFKED 573

Query: 698 GYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAF 757
           GYVPD   VL+D++ +QKE  L  HSEKLA+AFGL+  P G T+RV+KNLRIC DCH+  
Sbjct: 574 GYVPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFA 633

Query: 758 KFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KF+S++  R +++RD  RFH+   G CSCGDYW
Sbjct: 634 KFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 666



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 174/351 (49%), Gaps = 49/351 (13%)

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
           L+M +L  ++    Y ++++ C +    R G++VH ++++T   P    S+ +   L+ L
Sbjct: 79  LQMAILGREVKFEGYDTILNECVSQRAIREGQRVHTHMIKTCYLP----SVYLRTRLIVL 134

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y KC  + +AR++F++MP++++VSW A++SAY                            
Sbjct: 135 YNKCDCLGDAREMFDEMPQKNVVSWTAMISAY---------------------------- 166

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
              +Q G+  E L LF +M     +P  + FA  +TSC G    E GRQ+H+  +   Y+
Sbjct: 167 ---SQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYE 223

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
           S +  G++L+ MYA+ G +  A+ VF+ +P  D V+  A+I+   Q G    A++L+ Q+
Sbjct: 224 SHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQL 283

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA----RFIDLLC 566
             EG+  + +T+ +VL+A +    +  G++    +     +  G+  Y       ID+  
Sbjct: 284 QIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHV-----LRSGQYSYVVLLNSLIDMYS 338

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           + G    A+ + DS+P +     W A+L G   HG      +   +LF+LM
Sbjct: 339 KCGNVCYARRIFDSMPERTCIS-WNAMLVGYSKHGM----AREVLELFKLM 384



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 132/511 (25%), Positives = 221/511 (43%), Gaps = 126/511 (24%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y + L  C  +  I     + VH HMI + + P  ++  RLI +Y K   L  AR +FDE
Sbjct: 93  YDTILNECVSQRAIRE--GQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDE 150

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +PQ ++V+ T +I+AYS                   R   F                A+ 
Sbjct: 151 MPQKNVVSWTAMISAYS------------------QRGFAF---------------EALN 177

Query: 136 LFRDMRRDDVKPDNFTFTSVLSAL--ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
           LF +M R D +P++FTF ++L++   +L  E  +   Q+H   +K        V ++L+ 
Sbjct: 178 LFVEMLRSDTEPNHFTFATILTSCYGSLGFETGR---QIHSIAIKRNYESHMFVGSSLLD 234

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK----NDYLDAAREF-L 248
           +Y K       S R  +  A  VF  +PERD ++ T +++GY +     + L   R+  +
Sbjct: 235 MYAK-------SGR--ICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQI 285

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
           +GM+ N                             TY SV++A +       GKQVH+++
Sbjct: 286 EGMNSN---------------------------SVTYASVLTALSGLAALNHGKQVHSHV 318

Query: 309 LRTEAKPTPEFSLPV-NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367
           LR     + ++S  V  N+L+ +Y KCG V  AR IF+ MPER  +SWNA+L  Y   G+
Sbjct: 319 LR-----SGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGM 373

Query: 368 IDEAKSLFEAMRERNL-----LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
             E   LF+ MRE N      +++  ++SG +     + GL++F  M             
Sbjct: 374 AREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMV------------ 421

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
                        NG+         G +  +     ++ +  R G VE A      MP V
Sbjct: 422 -------------NGKD--------GIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFV 460

Query: 483 DSVS-WNAMIAALGQHGNGARAIELYEQMLK 512
            + + W +++ +   H +    I + +++L+
Sbjct: 461 PTAAIWGSLLGSCRVHSDVEIGIIVGQKLLE 491


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/532 (40%), Positives = 326/532 (61%), Gaps = 6/532 (1%)

Query: 261 ALISGYVHRELKMLMLR--IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
           AL +G V R L   +L+  ++ D F   S++       +  LG  +  +    E+     
Sbjct: 152 ALSNGGVGRALHCGILKFGLEFDSFVRVSLVDMYVK--VEELGSALKVFDESPES--VKN 207

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
            S+ + N L+  Y + G + +A ++F+ MP++D  SWN++++ ++  G +  AK LF  M
Sbjct: 208 GSVLIWNVLIHGYCRMGDLVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKM 267

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
            E+N++SWT M++G +QNG  E+ L+ F  M  EG +P DY    A+++CA +GAL+ G 
Sbjct: 268 PEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGL 327

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           ++H  L  +G+  +L  G AL+ MYA+CG +E A  VF+       + W+ MI     HG
Sbjct: 328 RIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHG 387

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
           +  +A++ +E M   G  PD + FL VL+AC+H+G V EG ++F+ M   Y I P   HY
Sbjct: 388 HFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHY 447

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
              +D+L RAG+  EA   I ++P  P   +W AL   CR H N+++   A+++L QL P
Sbjct: 448 TLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEP 507

Query: 619 HHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHP 678
            H G+YV LSN YA++GRWDDA RVR  MRD G  K+PG S+IEVD+K+H F+  D  H 
Sbjct: 508 KHPGSYVFLSNAYASVGRWDDAERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHN 567

Query: 679 EAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGG 738
            A  +Y  L+++    R+ GY  + + VLH++E ++KE AL  HSEKLA+AFG++    G
Sbjct: 568 RAVEIYSKLDEISASAREKGYTKEIECVLHNIEEEEKEEALGYHSEKLALAFGIVSTRPG 627

Query: 739 ATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            TVR++KNLR+C DCH+  K+ SK+  REI++RD KRFHHF DG CSCGDYW
Sbjct: 628 TTVRIVKNLRVCVDCHSFMKYASKMSKREIILRDMKRFHHFNDGVCSCGDYW 679



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 125/544 (22%), Positives = 221/544 (40%), Gaps = 93/544 (17%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           T  I++ S+ ++V  A  +F +  LK  ++  +NA+I   + NS   ++I  F  M +  
Sbjct: 78  TQFISSCSSLNSVDYAISIFQRFELK--NSYLFNALIRGLAENSRFESSISFFVLMLKWK 135

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC------ 198
           + PD  TF  VL + A +         +HC ++K G    + V  +L+ +YVK       
Sbjct: 136 ISPDRLTFPFVLKSAAAL-SNGGVGRALHCGILKFGLEFDSFVRVSLVDMYVKVEELGSA 194

Query: 199 -----------------VSSPFVSSRSLMG---AARRVFDEMPERDELSWTTMMTGYVKN 238
                            + +  +     MG    A  +FD MP++D  SW +++ G++K 
Sbjct: 195 LKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMPKKDTGSWNSLINGFMKM 254

Query: 239 DYLDAAREFLDGMSENVGVAWNALISGYVHR-------ELKMLMLR--IQLDEFTYTSVI 289
             +  A+E    M E   V+W  +++G+          E    ML    + +++T  S +
Sbjct: 255 GDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSAL 314

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
           SACA  G    G ++H YL     K     +L +  ALV +Y KCG +  A  +F++  E
Sbjct: 315 SACAKIGALDAGLRIHNYLSGNGFK----LNLVIGTALVDMYAKCGNIEHAEKVFHETKE 370

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
           + L+ W                               +VMI G A +G+  + L+ F  M
Sbjct: 371 KGLLIW-------------------------------SVMIWGWAIHGHFRKALQYFEWM 399

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY--DSSLSAGNALITMYARCG 467
           +  G KP    F   + +C+  G +  G +    +   GY  + S+     ++ M  R G
Sbjct: 400 KFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNM-RRGYLIEPSMKHYTLVVDMLGRAG 458

Query: 468 VVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLK-EGILPDRITFLT- 524
            ++ A      MP   D V W A+  A   H N   A    +++L+ E   P    FL+ 
Sbjct: 459 RLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSN 518

Query: 525 --------------VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
                          +S  +H      G  + E  H  +    G++ + R +++  +  +
Sbjct: 519 AYASVGRWDDAERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDE 578

Query: 571 FSEA 574
            S +
Sbjct: 579 ISAS 582



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 149/365 (40%), Gaps = 73/365 (20%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCK------SLK--------------------- 65
           + R++H  ++  G +    +   L+D+Y K      +LK                     
Sbjct: 158 VGRALHCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLI 217

Query: 66  --------LVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFY 117
                   LV A  LFD +P+ D  +  +LI  +    ++  A+E+F K P K  + V +
Sbjct: 218 HGYCRMGDLVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEK--NVVSW 275

Query: 118 NAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVV 177
             M+  +S N +   A+E F  M  +  +P+++T  S LSA A I   +   +++H  + 
Sbjct: 276 TTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAG-LRIHNYLS 334

Query: 178 KSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK 237
            +G  L   +  AL+ +Y KC +         +  A +VF E  E+  L W+ M+ G+  
Sbjct: 335 GNGFKLNLVIGTALVDMYAKCGN---------IEHAEKVFHETKEKGLLIWSVMIWGWAI 385

Query: 238 NDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGL 297
           + +   A ++ + M                           + D   + +V++AC++SG 
Sbjct: 386 HGHFRKALQYFEWMK----------------------FTGTKPDSVVFLAVLNACSHSGQ 423

Query: 298 FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWN 356
              G +    + R       E S+     +V +  + G+++EA      MP   D V W 
Sbjct: 424 VNEGLKFFDNMRRGY---LIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWG 480

Query: 357 AILSA 361
           A+  A
Sbjct: 481 ALFCA 485



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 148/391 (37%), Gaps = 74/391 (18%)

Query: 337 VNEARDIFNQMPERDLVSWNAILSAYVSA----GLIDEAKSLFEAMRERNLLSWTVMISG 392
            ++ R I  Q+   ++ S + +++ ++S+      +D A S+F+    +N   +  +I G
Sbjct: 55  THKLRQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRG 114

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG--YD 450
           LA+N   E  +  F  M      P    F   + S A L     GR LH  ++  G  +D
Sbjct: 115 LAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFD 174

Query: 451 S---------------------------------SLSAGNALITMYARCGVVEAANCVFN 477
           S                                 S+   N LI  Y R G +  A  +F+
Sbjct: 175 SFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFD 234

Query: 478 TMPNVDS-------------------------------VSWNAMIAALGQHGNGARAIEL 506
           +MP  D+                               VSW  M+    Q+G+  +A+E 
Sbjct: 235 SMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALET 294

Query: 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
           +  ML+EG  P+  T ++ LSAC   G +  G R    + G  G           +D+  
Sbjct: 295 FFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGN-GFKLNLVIGTALVDMYA 353

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL-FQLMPHHAGTYV 625
           + G    A+ V      K    IW  ++ G  IHG+    +Q  E + F      +  ++
Sbjct: 354 KCGNIEHAEKVFHETKEK-GLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFL 412

Query: 626 LLSNMYANLGRWDDAARVRKLMRDRGVKKEP 656
            + N  ++ G+ ++  +    MR RG   EP
Sbjct: 413 AVLNACSHSGQVNEGLKFFDNMR-RGYLIEP 442


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 247/673 (36%), Positives = 378/673 (56%), Gaps = 65/673 (9%)

Query: 121 ITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEE-KQCMQMHCTVVKS 179
           + A+SHN     A+  FR M +   +PD  TF+ +L+A+A +      Q  ++H     S
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 180 GTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND 239
           G      V  A+IS+Y KC           +  AR  F+E+  ++ ++W  MMT Y K D
Sbjct: 61  GLLPNVVVGTAVISMYGKC---------GRLDDARAAFEELQWKNSVTWNAMMTNY-KLD 110

Query: 240 YLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFR 299
             D  RE L+                 + RE+       + D+F+++  I AC+N     
Sbjct: 111 GRD--REALE-----------------LFREMCERSRSARPDKFSFSIAIEACSNLEDLE 151

Query: 300 LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAIL 359
            G+++H  +LR E K                                   +D+V   A+L
Sbjct: 152 QGREIHE-MLRREGKEL--------------------------------HKDVVVGTALL 178

Query: 360 SAYVSAGLIDEAKSLFEAMR-ERNLLSWTVMISGLAQNGYGEEGLKLFSQMR-LEGFKPC 417
           + Y   G ++EA+ +F+++R + + + W  MI+  AQ+G G++ L L+  M       P 
Sbjct: 179 NMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPK 238

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
              F   I  CA L AL+ GR +HA++  + +D++L   NAL+ MY +CG ++ A  VF+
Sbjct: 239 QGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFH 298

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKE 537
           +M   D +SWN +I++   HG+  +A+ LY++M  +G+ P  +TF+ +LSAC+H GLV +
Sbjct: 299 SMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVAD 358

Query: 538 GRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
           G  YF  M   + I P   H+   IDLL R G+ +EA+ V+ S+P + +A  W +LL  C
Sbjct: 359 GLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGAC 418

Query: 598 RIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPG 657
           + HG++  G++AA+Q+   +P  +G YVLLSN+YA  GRW D  ++RK+M  RGVKK PG
Sbjct: 419 KTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPG 478

Query: 658 CSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEY 717
            SWIE+ + VH F+  D +HP+ + +Y  L ++V EM+ LGYVPDT  V HD+E ++KE 
Sbjct: 479 KSWIEIGDVVHEFVSGDRSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKED 538

Query: 718 ALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFH 777
            L  HSEKLA+ +G M +PG + +R++KNLR+C DCH A KFMS++ GR+IVVRD  RFH
Sbjct: 539 LLVCHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAARFH 598

Query: 778 HFRDGKCSCGDYW 790
            F +G CSC DYW
Sbjct: 599 LFENGSCSCRDYW 611



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 110/440 (25%), Positives = 202/440 (45%), Gaps = 75/440 (17%)

Query: 79  PDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFR 138
           P++V  T +I+ Y     +  AR  F +  L+ +++V +NAM+T Y  +     A+ELFR
Sbjct: 64  PNVVVGTAVISMYGKCGRLDDARAAFEE--LQWKNSVTWNAMMTNYKLDGRDREALELFR 121

Query: 139 DM--RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL--NALISV 194
           +M  R    +PD F+F+  + A + + E+ +Q  ++H  + + G  L   V+   AL+++
Sbjct: 122 EMCERSRSARPDKFSFSIAIEACSNL-EDLEQGREIHEMLRREGKELHKDVVVGTALLNM 180

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMP-ERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
           Y KC           +  AR+VFD +  + D + W  M+  Y ++     A +    M +
Sbjct: 181 YSKCGD---------LEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHD 231

Query: 254 NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
              +A                       + T+ +VI  CA     + G+ +HA +  T  
Sbjct: 232 TTDLA---------------------PKQGTFVTVIDVCAELSALKQGRAIHARVRATNF 270

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
               + +L V+NALV +Y KCG ++EA D+F+ M  +D +SWN I+S+Y           
Sbjct: 271 ----DANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSY----------- 315

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
                               A +G+ ++ L L+ +M L+G KP +  F G +++C+  G 
Sbjct: 316 --------------------AYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGL 355

Query: 434 LENGRQLHAQLVHSG-YDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMI 491
           + +G     ++        S+     +I +  R G +  A  V  +MP   ++V W +++
Sbjct: 356 VADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLL 415

Query: 492 AALGQHGNGARAIELYEQML 511
            A   HG+  R +   +Q++
Sbjct: 416 GACKTHGDLKRGVRAADQVV 435



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 141/327 (43%), Gaps = 40/327 (12%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
             D+V  T L+  YS   +++ AR++F+       D+V +NAMI AY+ +  G  A++L+
Sbjct: 168 HKDVVVGTALLNMYSKCGDLEEARKVFDSIRHDA-DSVCWNAMIAAYAQHGRGKQALDLY 226

Query: 138 RDMR-RDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           R M    D+ P   TF +V+   A +    KQ   +H  V  +       V NAL+ +Y 
Sbjct: 227 RSMHDTTDLAPKQGTFVTVIDVCAEL-SALKQGRAIHARVRATNFDANLLVSNALVHMYG 285

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           KC           +  A  VF  M  +DE+SW T+++ Y  + + D A      M     
Sbjct: 286 KC---------GCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMD---- 332

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
                             +  ++  E T+  ++SAC++ GL   G     Y  R +    
Sbjct: 333 ------------------LQGVKPTEVTFVGLLSACSHGGLVADGLD---YFYRMQDDHR 371

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLF 375
            + S+P    ++ L  + G++ EA  +   MP + + V W ++L A  + G  D  + + 
Sbjct: 372 IKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHG--DLKRGVR 429

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEG 402
            A +  + + WT     L  N Y   G
Sbjct: 430 AADQVVDRVPWTSGGYVLLSNIYAAAG 456



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 70/137 (51%), Gaps = 19/137 (13%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSL------KLVYAR---TLFDEIPQPDIVA 83
           L RS+H    ++   P++     +ID+ C  L      + ++AR   T FD     +++ 
Sbjct: 225 LYRSMHD---TTDLAPKQGTFVTVIDV-CAELSALKQGRAIHARVRATNFD----ANLLV 276

Query: 84  RTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD 143
              L+  Y     +  A ++F+   +K++D + +N +I++Y+++ +   A+ L+++M   
Sbjct: 277 SNALVHMYGKCGCLDEALDVFH--SMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQ 334

Query: 144 DVKPDNFTFTSVLSALA 160
            VKP   TF  +LSA +
Sbjct: 335 GVKPTEVTFVGLLSACS 351


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/620 (38%), Positives = 350/620 (56%), Gaps = 33/620 (5%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           Q+H  ++K  TGL    + A  S  +   +SP   S   +  AR VFD +   +   W T
Sbjct: 36  QIHGQMLK--TGLILDEIPA--SKLLAFCASPNSGS---LAYARTVFDRIFRPNTFMWNT 88

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           M+ GY  +   + A                     Y H    ML   +  + +T+  ++ 
Sbjct: 89  MIRGYSNSKEPEEALLL------------------YHH----MLYHSVPHNAYTFPFLLK 126

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           AC++       +Q+HA++++          +   N+L+ +Y K G +  AR +F+Q+ +R
Sbjct: 127 ACSSMSASEETQQIHAHIIKMGFGS----EIYTTNSLLNVYSKSGDIKSARLLFDQVDQR 182

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           D VSWN+++  Y   G I+ A  +F  M ERN++SWT MISG    G  +E L LF +M+
Sbjct: 183 DTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQ 242

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
             G K  + A    + +CA LG L+ G+ +HA +     +     G  LI MYA+CG +E
Sbjct: 243 TAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLE 302

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
            A  VF  M       W AMI+    HG G  A+E + +M   G+ P+++TF  +L+AC+
Sbjct: 303 EAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACS 362

Query: 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590
           HAGLV E +  FE+M   +G  P  +HY   +DLL RAG   EA+++I+++P KP+A IW
Sbjct: 363 HAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIW 422

Query: 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650
            ALL  C IHGN++LG Q  + L Q+ P H G Y+ L++++A  G W+ AARVR+ M+++
Sbjct: 423 GALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQ 482

Query: 651 GVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDM 710
           GV K PGCS I V+   H FL  D +HP+ + +   LEQ+V  +R+ GY P    +L D+
Sbjct: 483 GVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDL 542

Query: 711 ESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVV 770
           E  +KE A+  HSEKLAV FGL+    G T+R++KNLR+C DCH   K +SKV  REI++
Sbjct: 543 EDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILM 602

Query: 771 RDGKRFHHFRDGKCSCGDYW 790
           RD  RFH F+DG C+CGDYW
Sbjct: 603 RDRTRFHLFKDGNCTCGDYW 622



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 130/497 (26%), Positives = 218/497 (43%), Gaps = 107/497 (21%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLK---LVYARTLFDEIPQPDIVARTTLIAAY 91
           R +H  M+ +G    E   ++L+  +C S     L YART+FD I +P            
Sbjct: 35  RQIHGQMLKTGLILDEIPASKLL-AFCASPNSGSLAYARTVFDRIFRP------------ 81

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                                +T  +N MI  YS++     A+ L+  M    V  + +T
Sbjct: 82  ---------------------NTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYT 120

Query: 152 FTSVLSAL-ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           F  +L A  ++   EE Q  Q+H  ++K G G      N+L++VY         S    +
Sbjct: 121 FPFLLKACSSMSASEETQ--QIHAHIIKMGFGSEIYTTNSLLNVY---------SKSGDI 169

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV--- 267
            +AR +FD++ +RD +SW +M+ GY K   ++ A E  + M E   ++W ++ISG V   
Sbjct: 170 KSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAG 229

Query: 268 ---------HRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                    HR   M    I+LD     S + ACA+ G+   GK +HAY+ + E +  P 
Sbjct: 230 KPKEALNLFHR---MQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPI 286

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
                   L+ +Y KCG + EA ++F +M E+ +  W A++S Y                
Sbjct: 287 LGC----VLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGY---------------- 326

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
                          A +G G E L+ F +M+  G +P    F G +T+C+  G +   +
Sbjct: 327 ---------------AIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAK 371

Query: 439 QLHAQL--VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALG 495
            L   +  +H G+  S+     ++ +  R G+++ A  +   MP   ++  W A++ A  
Sbjct: 372 LLFESMERIH-GFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACH 430

Query: 496 QHGNGARAIELYEQMLK 512
            HGN    +EL +Q+ K
Sbjct: 431 IHGN----LELGKQIGK 443



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 154/346 (44%), Gaps = 40/346 (11%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
           S   + +HAH+I  GF    +  N L+++Y KS  +  AR LFD++ Q D V+  ++I  
Sbjct: 134 SEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDG 193

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
           Y+    +++A E+FN  P   R+ + + +MI+          A+ LF  M+   +K DN 
Sbjct: 194 YTKCGEIEMAYEIFNHMP--ERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNV 251

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
              S L A A +   + Q   +H  + K    +   +   LI +Y KC           +
Sbjct: 252 ALVSTLQACADLGVLD-QGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGD---------L 301

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
             A  VF +M E+    WT M++GY  +     A E+                       
Sbjct: 302 EEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWF---------------------- 339

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVT 329
           +KM    ++ ++ T+T +++AC+++GL    K +   + R    KP+ E        +V 
Sbjct: 340 MKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHY----GCMVD 395

Query: 330 LYWKCGKVNEARDIFNQMPER-DLVSWNAILSAYVSAGLIDEAKSL 374
           L  + G + EA ++   MP + +   W A+L+A    G ++  K +
Sbjct: 396 LLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQI 441


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/571 (37%), Positives = 337/571 (59%), Gaps = 44/571 (7%)

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRI---------Q 279
             ++  Y K  +++ AR+  DGM E   V+WN +I  Y    ++   L I         +
Sbjct: 102 NVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFK 161

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
             EFT +SV+SAC  +      K++H   ++T    + + +L V  AL+ LY KCG    
Sbjct: 162 FSEFTISSVLSACGANCDALECKKLHCLSMKT----SLDLNLYVGTALLDLYAKCG---- 213

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
                                      +I++A  +FE+M++++ ++W+ M++G  Q+   
Sbjct: 214 ---------------------------MINDAVQVFESMQDKSSVTWSSMVAGYVQSKNY 246

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
           EE L L+ + +    +   +  +  I +C+ L AL  G+Q+HA +  SG+ S++   ++ 
Sbjct: 247 EEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSA 306

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           + MYA+CG +  +  +F+ +   +   WN +I+   +H      + L+E+M ++G+ P+ 
Sbjct: 307 VDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNE 366

Query: 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579
           +TF ++LS C H GLV+EGRR+F+ M   YG+ P   HY+  +D+L RAG  SEA ++I 
Sbjct: 367 VTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIK 426

Query: 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639
           S+PF+P+A IW +LLA CR+  N++L   AA++LF+L P +AG +VLLSN+YA   +W++
Sbjct: 427 SIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELEPENAGNHVLLSNIYAANKQWEE 486

Query: 640 AARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGY 699
            A+ RKL+RD  VKK  G SWI++ +KVH+F V +++HP  + +   L+ LV+E+RK GY
Sbjct: 487 IAKSRKLLRDCDVKKVRGQSWIDIKDKVHIFRVGESSHPRIREICTMLDNLVIELRKFGY 546

Query: 700 VPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKF 759
            P  +  LHD+E  +KE  L  HSEKLA+ FGLM LP G+TVR++KNLRIC DCH   K 
Sbjct: 547 KPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPEGSTVRIMKNLRICVDCHEFMKA 606

Query: 760 MSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            S    R I+VRD  RFHHF DG CSCG++W
Sbjct: 607 ASMATRRFIIVRDANRFHHFSDGHCSCGEFW 637



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 108/431 (25%), Positives = 203/431 (47%), Gaps = 72/431 (16%)

Query: 65  KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
           K  + +T+  E+ Q D+     LI AYS    V+LAR++F+   +  R  V +N MI  Y
Sbjct: 83  KACHGKTMRMEL-QGDVTLSNVLINAYSKCGFVELARQVFD--GMLERSLVSWNTMIGLY 139

Query: 125 SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLF 184
           + N     A+++F +MR +  K   FT +SVLSA      +  +C ++HC  +K+   L 
Sbjct: 140 TRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANC-DALECKKLHCLSMKTSLDLN 198

Query: 185 TSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAA 244
             V  AL+ +Y KC          ++  A +VF+ M ++  ++W++M+ GYV++   + A
Sbjct: 199 LYVGTALLDLYAKC---------GMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEA 249

Query: 245 REFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304
                            L+     R      + ++ ++FT +SVI AC+N      GKQ+
Sbjct: 250 ----------------LLLYRRAQR------MSLEQNQFTLSSVICACSNLAALIEGKQM 287

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVS 364
           HA ++R     +  F   V ++ V +Y KCG + E+  IF+++ E+++  WN I+S    
Sbjct: 288 HA-VIRKSGFGSNVF---VASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIIS---- 339

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
                                      G A++   +E + LF +M+ +G  P +  F+  
Sbjct: 340 ---------------------------GFAKHARPKEVMILFEKMQQDGMHPNEVTFSSL 372

Query: 425 ITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
           ++ C   G +E GR+    +  + G   ++   + ++ +  R G++  A  +  ++P   
Sbjct: 373 LSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEP 432

Query: 484 SVS-WNAMIAA 493
           + S W +++A+
Sbjct: 433 TASIWGSLLAS 443



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 153/301 (50%), Gaps = 7/301 (2%)

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           D+   N +++AY   G ++ A+ +F+ M ER+L+SW  MI    +N    E L +F +MR
Sbjct: 97  DVTLSNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMR 156

Query: 411 LEGFKPCDYAFAGAITSC-AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
            EGFK  ++  +  +++C A   ALE  ++LH   + +  D +L  G AL+ +YA+CG++
Sbjct: 157 NEGFKFSEFTISSVLSACGANCDALE-CKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMI 215

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
             A  VF +M +  SV+W++M+A   Q  N   A+ LY +  +  +  ++ T  +V+ AC
Sbjct: 216 NDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICAC 275

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
           ++   + EG++    +    G        +  +D+  + G   E+  +   +  K +  +
Sbjct: 276 SNLAALIEGKQMHAVIRKS-GFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEK-NIEL 333

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQ--LMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647
           W  +++G   H      +   E++ Q  + P+   T+  L ++  + G  ++  R  KLM
Sbjct: 334 WNTIISGFAKHARPKEVMILFEKMQQDGMHPNEV-TFSSLLSVCGHTGLVEEGRRFFKLM 392

Query: 648 R 648
           R
Sbjct: 393 R 393



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 2/176 (1%)

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
           F   +  CA  GA+   +  H + +       ++  N LI  Y++CG VE A  VF+ M 
Sbjct: 66  FIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGML 125

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
               VSWN MI    ++   + A++++ +M  EG      T  +VLSAC       E ++
Sbjct: 126 ERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKK 185

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
               +     +          +DL  + G  ++A  V +S+  K S   W +++AG
Sbjct: 186 -LHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVT-WSSMVAG 239


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/622 (37%), Positives = 355/622 (57%), Gaps = 68/622 (10%)

Query: 170 MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWT 229
           M  H  +++ G    T   N L+++Y KC          L+ +AR++FDEMP R  +SW 
Sbjct: 40  MACHAQIIRVGLRADTITSNMLMNMYSKC---------GLVESARKLFDEMPVRSLVSWN 90

Query: 230 TMMTGYVKN-DYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSV 288
           TM+  + +N D   A   F+    E    +                       EFT +SV
Sbjct: 91  TMVGSHTQNGDCEKALVLFMQMQKEGTSCS-----------------------EFTVSSV 127

Query: 289 ISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
           + ACA        KQ+H + L+T      + ++ V  AL+ +Y KCG             
Sbjct: 128 VCACAAKCCVFECKQLHGFALKT----ALDSNVFVGTALLDVYAKCG------------- 170

Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQ 408
                             L+ +A  +FE M ER+ ++W+ M++G  QN   EE L LF +
Sbjct: 171 ------------------LVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHR 212

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
            +  G +   +  + A+++CA   AL  G+Q+ A    +G  S++   ++LI MYA+CG+
Sbjct: 213 AQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGI 272

Query: 469 VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
           +E A  VF+++   + V WNA+++   +H     A+  +E+M + GI P+ IT+++VLSA
Sbjct: 273 IEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSA 332

Query: 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
           C+H GLV++GR+YF+ M   + + P   HY+  +D+L RAG   EAKD ID +PF  +A 
Sbjct: 333 CSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATAS 392

Query: 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648
           +W +LLA CRI+ N++L   AA+ LF++ PH+AG +VLLSN+YA   RW++ AR R L++
Sbjct: 393 MWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLK 452

Query: 649 DRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLH 708
           +   KKE G SWIE+ +KVH F+V +  HP    +Y  LE LV EM+K+GY   T+  LH
Sbjct: 453 ESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLH 512

Query: 709 DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREI 768
           D+E  +K+  L  HSEKLA+ FG+M LP GA +R++KNLRICGDCH+  K  S +  REI
Sbjct: 513 DVEESRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREI 572

Query: 769 VVRDGKRFHHFRDGKCSCGDYW 790
           +VRD  RFHHF++G CSCG++W
Sbjct: 573 IVRDTNRFHHFKNGYCSCGEFW 594



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 128/513 (24%), Positives = 226/513 (44%), Gaps = 103/513 (20%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + D +    L+  YS    V+ AR++F++ P+  R  V +N M+ +++ N +   A+ LF
Sbjct: 52  RADTITSNMLMNMYSKCGLVESARKLFDEMPV--RSLVSWNTMVGSHTQNGDCEKALVLF 109

Query: 138 RDMRRDDVKPDNFTFTSVLSALA---LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
             M+++      FT +SV+ A A    + E    C Q+H   +K+       V  AL+ V
Sbjct: 110 MQMQKEGTSCSEFTVSSVVCACAAKCCVFE----CKQLHGFALKTALDSNVFVGTALLDV 165

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           Y KC          L+  A  VF+ MPER +++W++M+ GYV+N+  + A          
Sbjct: 166 YAKC---------GLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLF------ 210

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
                        HR   M    ++ ++FT +S +SACA       GKQV A   +T   
Sbjct: 211 -------------HRAQAM---GLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIG 254

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
                ++ V ++L+ +Y KCG + EA  +F+ + E+++V WNAILS +            
Sbjct: 255 S----NIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGF------------ 298

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
                 R++ S   MI               F +M+  G  P D  +   +++C+ LG +
Sbjct: 299 -----SRHVRSLEAMI--------------YFEKMQQMGICPNDITYISVLSACSHLGLV 339

Query: 435 ENGRQLHAQL--VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMI 491
           E GR+    +  VH+   + L   + ++ +  R G++  A    + MP +  +  W +++
Sbjct: 340 EKGRKYFDLMIRVHNVSPNVLHY-SCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLL 398

Query: 492 AALGQHGNGARAIELYEQMLKE--GILPDRI---TFLTVLSACNH--------AGLVKE- 537
           A+   +    R +EL E   K    I P        L+ + A N           L+KE 
Sbjct: 399 ASCRIY----RNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKES 454

Query: 538 ------GRRYFETMHGPYGIPPGEDHYARFIDL 564
                 G+ + E  H  +    GE ++ R +++
Sbjct: 455 KAKKERGKSWIEIKHKVHSFMVGERNHPRIVEI 487



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 137/296 (46%), Gaps = 37/296 (12%)

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           G   HA ++R   +         +N L+ +Y KCG V  AR +F++MP R LVSWN    
Sbjct: 39  GMACHAQIIRVGLRADT----ITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNT--- 91

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
                                       M+    QNG  E+ L LF QM+ EG    ++ 
Sbjct: 92  ----------------------------MVGSHTQNGDCEKALVLFMQMQKEGTSCSEFT 123

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
            +  + +CA    +   +QLH   + +  DS++  G AL+ +YA+CG+V+ AN VF  MP
Sbjct: 124 VSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMP 183

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
               V+W++M+A   Q+     A+ L+ +    G+  ++ T  + LSAC     + EG++
Sbjct: 184 ERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQ 243

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
             + +    GI       +  ID+  + G   EA  V  S+  K +  +W A+L+G
Sbjct: 244 -VQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEK-NVVLWNAILSG 297



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 145/349 (41%), Gaps = 77/349 (22%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           + +H   + +       +   L+D+Y K   +  A  +F+ +P+                
Sbjct: 141 KQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPE---------------- 184

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
                            R  V +++M+  Y  N     A+ LF   +   ++ + FT +S
Sbjct: 185 -----------------RSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISS 227

Query: 155 VLSALALIVE--EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            LSA A      E KQ   + C   K+G G    V+++LI +Y KC          ++  
Sbjct: 228 ALSACAARAALIEGKQVQAVSC---KTGIGSNIFVISSLIDMYAKC---------GIIEE 275

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A  VF  + E++ + W  +++G+ ++     A  + +                      K
Sbjct: 276 AYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFE----------------------K 313

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           M  + I  ++ TY SV+SAC++ GL   G++    ++R     +P  ++   + +V +  
Sbjct: 314 MQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVH-NVSP--NVLHYSCMVDILG 370

Query: 333 KCGKVNEARDIFNQMPERDLVS-WNAILSA---YVSAGLID-EAKSLFE 376
           + G ++EA+D  ++MP     S W ++L++   Y +  L +  AK LFE
Sbjct: 371 RAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFE 419


>gi|217426788|gb|ACK44496.1| AT5G09950-like protein [Arabidopsis arenosa]
          Length = 772

 Score =  431 bits (1107), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 254/695 (36%), Positives = 393/695 (56%), Gaps = 73/695 (10%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           L+  Y+   ++  AR +F    +  +D+V +N+MIT    N     A+E ++ MRR ++ 
Sbjct: 75  LVNMYAKCGSIADARRVF--CFMMEKDSVSWNSMITGLDQNGCFIEAVERYQSMRRHEIL 132

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           P +FT  S LS+ A + +  K   Q+H   +K G  L  SV NAL+++Y         + 
Sbjct: 133 PGSFTLISSLSSCASL-KWAKLGQQIHGESLKLGIDLNVSVSNALMTLY---------AE 182

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              +   R++F  MPE D++SW +++     ++           + E V    NAL +G 
Sbjct: 183 TGYLNECRKIFSSMPEHDQVSWNSIIGALASSE---------RSLPEAVACFLNALRAGQ 233

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                       +L+  T++SV+SA ++     LGKQ+H   L+              NA
Sbjct: 234 ------------KLNRITFSSVLSAVSSLSFGELGKQIHGLALKYNIADEA----TTENA 277

Query: 327 LVTLYWKCGKVNEARDIFNQMPE-RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
           L+  Y KCG+++    IF++M E RD V+WN+++S Y+   L+ +A  L           
Sbjct: 278 LIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMISGYIHNELLAKALDLV---------- 327

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
           W ++ +G                 RL+ F      +A  +++ A +  LE G ++HA  V
Sbjct: 328 WFMLQTG----------------QRLDSF-----MYATVLSAFASVATLERGMEVHACSV 366

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIE 505
            +  +S +  G+AL+ MY++CG ++ A   FNTMP  +S SWN+MI+   +HG G  A++
Sbjct: 367 RACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALK 426

Query: 506 LYEQMLKEG-ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
           L+  M  +G   PD +TF+ VLSAC+HAGL++EG ++FE+M   YG+ P  +H++   DL
Sbjct: 427 LFANMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADL 486

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALL-AGCRIHG-NIDLGIQAAEQLFQLMPHHAG 622
           L RAG+  + +D ID +P KP+  IW  +L A CR +G   +LG +AAE LFQL P +A 
Sbjct: 487 LGRAGELDKLEDFIDKMPVKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAV 546

Query: 623 TYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQA 682
            YVLL NMYA  GRW+D  + RK M+D  VKKE G SW+ + + VH+F+  D +HP+   
Sbjct: 547 NYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDTDV 606

Query: 683 VYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGL-MKLPGGATV 741
           +YK L++L  +MR  GYVP T F L+D+E + KE  LS HSEKLAVAF L  +      +
Sbjct: 607 IYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPI 666

Query: 742 RVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRF 776
           R++KNLR+CGDCH+AFK++SK+ GR+I++RD  R+
Sbjct: 667 RIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRY 701



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 110/226 (48%), Gaps = 35/226 (15%)

Query: 298 FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA 357
            + G++VH +++ T      +F + + N LV +Y KCG + +AR +F  M E+D VSWN+
Sbjct: 49  LKKGREVHGHVITT---GLVDFMVGIGNGLVNMYAKCGSIADARRVFCFMMEKDSVSWNS 105

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
           +++                               GL QNG   E ++ +  MR     P 
Sbjct: 106 MIT-------------------------------GLDQNGCFIEAVERYQSMRRHEILPG 134

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
            +    +++SCA L   + G+Q+H + +  G D ++S  NAL+T+YA  G +     +F+
Sbjct: 135 SFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFS 194

Query: 478 TMPNVDSVSWNAMIAALGQHGNG-ARAIELYEQMLKEGILPDRITF 522
           +MP  D VSWN++I AL         A+  +   L+ G   +RITF
Sbjct: 195 SMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITF 240



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 94/199 (47%), Gaps = 12/199 (6%)

Query: 392 GLAQNGYGEEGLKLFSQMR-LEGFKPCDYAF---AGAITSCAGLGALENGRQLHAQLVHS 447
           GL +  +GEE  KLF  M  +    P  Y     +    S A    L+ GR++H  ++ +
Sbjct: 3   GLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEQVGLKKGREVHGHVITT 62

Query: 448 GY-DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
           G  D  +  GN L+ MYA+CG +  A  VF  M   DSVSWN+MI  L Q+G    A+E 
Sbjct: 63  GLVDFMVGIGNGLVNMYAKCGSIADARRVFCFMMEKDSVSWNSMITGLDQNGCFIEAVER 122

Query: 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG---PYGIPPGEDHYARFID 563
           Y+ M +  ILP   T ++ LS+C      K G++    +HG     GI          + 
Sbjct: 123 YQSMRRHEILPGSFTLISSLSSCASLKWAKLGQQ----IHGESLKLGIDLNVSVSNALMT 178

Query: 564 LLCRAGKFSEAKDVIDSLP 582
           L    G  +E + +  S+P
Sbjct: 179 LYAETGYLNECRKIFSSMP 197



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 3/82 (3%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + D+V  + L+  YS    +  A   FN  P+  R++  +N+MI+ Y+ +  G  A++LF
Sbjct: 371 ESDVVVGSALVDMYSKCGRLDYALRFFNTMPV--RNSYSWNSMISGYARHGQGEEALKLF 428

Query: 138 RDMRRD-DVKPDNFTFTSVLSA 158
            +M+ D    PD+ TF  VLSA
Sbjct: 429 ANMKLDGQTPPDHVTFVGVLSA 450


>gi|449434268|ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
 gi|449533166|ref|XP_004173548.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
          Length = 712

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 240/745 (32%), Positives = 384/745 (51%), Gaps = 94/745 (12%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
           N L+  + ++ ++  AR+LF+++  P +   T +I  Y+    ++ A ++F + P+K  D
Sbjct: 54  NYLLSFHLRNGRIDEARSLFNKMSSPGVNLYTMMIGGYADEGRLEDALKLFYEMPVK--D 111

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMH 173
            + +N+M+       +   A  +F  M   +V                            
Sbjct: 112 LISWNSMLKGCLKCGDLTMACNMFDKMSERNVVS-------------------------- 145

Query: 174 CTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMT 233
                     +T+++N L+                 +  A  +F  MP +D  +W +M+ 
Sbjct: 146 ----------WTTIINGLLEF-------------GRVEVAECLFRVMPTKDVTAWNSMVH 182

Query: 234 GYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH--RELKMLML-RIQLDEFTYTS--- 287
           G+  N  ++ A E  + M     ++W ++I G  H  R  + L++    L  F  TS   
Sbjct: 183 GFFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKMLASFKATSSTL 242

Query: 288 --VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFN 345
              ++ACAN     +G Q+H  +++T                                FN
Sbjct: 243 ACALTACANICTPFIGVQIHGLIVKTGY-----------------------------CFN 273

Query: 346 QMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKL 405
           +     L+S+      Y +  LID A S+F     RN++ WT +++G   N    + L++
Sbjct: 274 EYISASLISF------YANCKLIDNASSIFNDNVSRNVVVWTALLTGYGLNCRHTDALQV 327

Query: 406 FSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465
           F  M      P   +   A+ SC GL A++ GR++HA     G +S +   N+L+ MY +
Sbjct: 328 FKGMMRMSVLPNQSSLTSALNSCCGLEAVDRGREVHAVAHKLGLESDIFVSNSLVVMYTK 387

Query: 466 CGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTV 525
           CG +     VF  M   + VSWN++I    QHG G  A+ L+ QM++  + PD IT   +
Sbjct: 388 CGHINDGIAVFTRMSRKNVVSWNSIIVGCAQHGFGRWALTLFAQMIRTRVDPDEITLAGL 447

Query: 526 LSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP 585
           LSAC H+G++ +GR +F+     +GI    +HY+  +DLL R G+  EA+ +I  +P K 
Sbjct: 448 LSACGHSGMLTKGRCFFKHFGKNFGIEMTNEHYSSMVDLLGRYGQLEEAEALIHIMPGKA 507

Query: 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645
           +  +W ALL+    H N+ +  +AA+ +  L P+ +  Y LLSN+YA+ G+W + +++RK
Sbjct: 508 NYMVWLALLSSSINHSNVHVAERAAKCVLDLQPNCSAAYTLLSNLYASTGKWTEVSKIRK 567

Query: 646 LMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKF 705
            M+D G+ K+PG SWI +    H F+  D +HP ++ +Y+ LE L  ++++LGYVPD KF
Sbjct: 568 KMKDEGILKQPGSSWITIKGIKHNFISGDQSHPLSRKIYQKLEWLGGKLKELGYVPDPKF 627

Query: 706 VLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVG 765
             HD+E++QKE  LS HSE+LA+ FGL+    G+T+ V+KNLRICGDCHNA K  SKVVG
Sbjct: 628 SFHDVETEQKEEMLSYHSERLAIGFGLISTVEGSTIIVMKNLRICGDCHNAVKLTSKVVG 687

Query: 766 REIVVRDGKRFHHFRDGKCSCGDYW 790
           REIVVRD  RFHHF +G CSCGDYW
Sbjct: 688 REIVVRDPSRFHHFHNGTCSCGDYW 712



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/415 (24%), Positives = 189/415 (45%), Gaps = 21/415 (5%)

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           +SV +   +S  +S   L G  +      P  + L     ++ +++N  +D AR   + M
Sbjct: 22  LSVSIVRTTSSLISYICLFGTKKLSILTTPPSNYL-----LSFHLRNGRIDEARSLFNKM 76

Query: 252 SENVGVAWNALISGY-----VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
           S      +  +I GY     +   LK+       D  ++ S++  C   G   +   +  
Sbjct: 77  SSPGVNLYTMMIGGYADEGRLEDALKLFYEMPVKDLISWNSMLKGCLKCGDLTMACNMFD 136

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366
              +   +    ++  +N  L     + G+V  A  +F  MP +D+ +WN+++  + S G
Sbjct: 137 ---KMSERNVVSWTTIINGLL-----EFGRVEVAECLFRVMPTKDVTAWNSMVHGFFSNG 188

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
            +++A  LFE M  RN++SWT +I GL  NG   E L +F +M L  FK      A A+T
Sbjct: 189 RVEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKM-LASFKATSSTLACALT 247

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
           +CA +     G Q+H  +V +GY  +     +LI+ YA C +++ A+ +FN   + + V 
Sbjct: 248 ACANICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKLIDNASSIFNDNVSRNVVV 307

Query: 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546
           W A++   G +     A+++++ M++  +LP++ +  + L++C     V  GR      H
Sbjct: 308 WTALLTGYGLNCRHTDALQVFKGMMRMSVLPNQSSLTSALNSCCGLEAVDRGREVHAVAH 367

Query: 547 GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
              G+          + +  + G  ++   V   +  K     W +++ GC  HG
Sbjct: 368 -KLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRMSRKNVVS-WNSIIVGCAQHG 420


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/630 (35%), Positives = 350/630 (55%), Gaps = 43/630 (6%)

Query: 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVK--CVSSPFVSSRSLMGAARRVFDEMPERDE 225
           Q  Q+H  V++ G      +L  LI    K      P+          RRV + +  R+ 
Sbjct: 65  QIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPY---------PRRVIEPVQFRNP 115

Query: 226 LSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTY 285
             WT ++ GY      D A                  + G + +E       I    FT+
Sbjct: 116 FLWTAVIRGYTIEGKFDEA----------------IAMYGCMRKE------EITPVSFTF 153

Query: 286 TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP-VNNALVTLYWKCGKVNEARDIF 344
           ++++ AC + G   LG+Q HA   R        F    V N ++ +Y KCG +  AR +F
Sbjct: 154 SALLKACGSMGDLNLGRQFHAQTFRLRG-----FCFVYVGNTMIDMYVKCGSIVCARKVF 208

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           ++MPERD++SW  +++AY   G ++ A  LFE++  +++++WT M++G AQN   +E L+
Sbjct: 209 DEMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALE 268

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS--LSAGNALITM 462
            F +M   G +  +   AG I++CA LGA +   +       SGY  S  +  G+ALI M
Sbjct: 269 YFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDM 328

Query: 463 YARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE-GILPDRIT 521
           Y++CG VE A  VF +M N +  S+++MI  L  HG    A++L+  M+ +  I P+ +T
Sbjct: 329 YSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVT 388

Query: 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581
           F+  L+AC+H+GLV +GR+ F +M+  +G+ P  DHY   +DLL RAG+  EA ++I ++
Sbjct: 389 FVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIKTM 448

Query: 582 PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAA 641
             +P   +W ALL  CRIH N D+   AAE LF+L P   G Y+LLSN+Y++ G W    
Sbjct: 449 SVEPHGGVWGALLGACRIHNNPDIAEIAAEHLFELEPDIIGNYILLSNVYSSAGDWGGVL 508

Query: 642 RVRKLMRDRGVKKEPGCSW-IEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYV 700
            VRKL++++G+KK P  SW ++ + ++H F   +  HP ++ +   LE+LV  +  LGY 
Sbjct: 509 SVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSKKIQDKLEELVERLTALGYQ 568

Query: 701 PDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFM 760
           PD   V +D+  + K   L  H+EKLA+AF L+      T++++KNLR+C DCH   +  
Sbjct: 569 PDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDYTIKIMKNLRMCQDCHMFMRLA 628

Query: 761 SKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           S+V GR I++RD  RFHHFR G CSCGD+W
Sbjct: 629 SEVTGRVIIMRDNMRFHHFRSGACSCGDFW 658



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/447 (25%), Positives = 200/447 (44%), Gaps = 57/447 (12%)

Query: 108 PLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEK 167
           P++ R+   + A+I  Y+       AI ++  MR++++ P +FTF+++L A   +  +  
Sbjct: 109 PVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSM-GDLN 167

Query: 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS 227
              Q H    +     F  V N +I +YVKC S         +  AR+VFDEMPERD +S
Sbjct: 168 LGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGS---------IVCARKVFDEMPERDVIS 218

Query: 228 WTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLR---------I 278
           WT ++  Y +   +++A +  + +     VAW A+++G+         L          I
Sbjct: 219 WTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGI 278

Query: 279 QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
           + DE T    ISACA  G  +   +  A  +  ++  +P   + + +AL+ +Y KCG V 
Sbjct: 279 RADEVTVAGYISACAQLGASKYADR--AVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVE 336

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGY 398
           EA ++F  M  +++ S+++                               MI GLA +G 
Sbjct: 337 EAVNVFVSMNNKNVFSYSS-------------------------------MILGLATHGR 365

Query: 399 GEEGLKLFSQMRLE-GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAG 456
            +E L LF  M  +   KP    F GA+T+C+  G ++ GRQ+ A +  + G + +    
Sbjct: 366 AQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHY 425

Query: 457 NALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQM--LKE 513
             ++ +  R G ++ A  +  TM        W A++ A   H N   A    E +  L+ 
Sbjct: 426 TCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAEHLFELEP 485

Query: 514 GILPDRITFLTVLSACNHAGLVKEGRR 540
            I+ + I    V S+    G V   R+
Sbjct: 486 DIIGNYILLSNVYSSAGDWGGVLSVRK 512



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 155/340 (45%), Gaps = 53/340 (15%)

Query: 32  SLARSVHAHMISSGFKPRE----HIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTL 87
           +L R  HA      F+ R     ++ N +ID+Y K   +V AR +FDE+P+ D+++ T L
Sbjct: 167 NLGRQFHAQT----FRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTEL 222

Query: 88  IAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147
           IAAY+   N++ A ++F   P K  D V + AM+T ++ N+    A+E F  M +  ++ 
Sbjct: 223 IAAYARVGNMESAADLFESLPTK--DMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRA 280

Query: 148 DNFTFTSVLSALALIVEEE--KQCMQMHCTVVKSGTGLFTSVL--NALISVYVKCVSSPF 203
           D  T    +SA A +   +   + +Q+     KSG      V+  +ALI +Y KC +   
Sbjct: 281 DEVTVAGYISACAQLGASKYADRAVQI---AQKSGYSPSDHVVIGSALIDMYSKCGN--- 334

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
                 +  A  VF  M  ++  S+++M+ G   +     A +    M     +  N + 
Sbjct: 335 ------VEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTV- 387

Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT-EAKPTPEFSLP 322
                               T+   ++AC++SGL   G+QV A + +T   +PT +    
Sbjct: 388 --------------------TFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHY-- 425

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
               +V L  + G++ EA ++   M  E     W A+L A
Sbjct: 426 --TCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGA 463


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/493 (42%), Positives = 307/493 (62%), Gaps = 8/493 (1%)

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           G+Q+HA +L       P     V  +L+ +Y  CG    AR  F+++ + DL SWNAI+ 
Sbjct: 79  GRQLHAQILLLGLANDPF----VQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIH 134

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR-LEG--FKPC 417
           A   AG+I  A+ LF+ M E+N++SW+ MI G    G  +  L LF  ++ LEG   +P 
Sbjct: 135 ANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPN 194

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
           ++  +  +++CA LGAL++G+ +HA +  +G    +  G +LI MYA+CG +E A C+F+
Sbjct: 195 EFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFD 254

Query: 478 TM-PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536
            + P  D ++W+AMI A   HG     +EL+ +M+ +G+ P+ +TF+ VL AC H GLV 
Sbjct: 255 NLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVS 314

Query: 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           EG  YF+ M   YG+ P   HY   +DL  RAG+  +A +V+ S+P +P   IW ALL G
Sbjct: 315 EGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNG 374

Query: 597 CRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEP 656
            RIHG+++    A  +L +L P ++  YVLLSN+YA LGRW +   +R LM  RG+KK P
Sbjct: 375 ARIHGDVETCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLP 434

Query: 657 GCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKE 716
           GCS +EVD  +  F   D +HPE   +Y  L++++  + K GY  +T  VL D++ + KE
Sbjct: 435 GCSLVEVDGVIREFFAGDNSHPELLNLYVMLDEIMKRLEKHGYERNTGEVLLDLDEEGKE 494

Query: 717 YALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRF 776
           +ALS HSEKLA+A+  ++   G T+R++KNLRIC DCH A K +SK   REI+VRD  RF
Sbjct: 495 FALSLHSEKLAIAYCFLRTSPGTTIRIVKNLRICSDCHVAIKIISKEFNREIIVRDCNRF 554

Query: 777 HHFRDGKCSCGDY 789
           HHF++G CSC DY
Sbjct: 555 HHFKNGLCSCKDY 567



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 179/394 (45%), Gaps = 45/394 (11%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           T    R +HA ++  G      +   LI++Y       +AR  FDEI QPD+ +   +I 
Sbjct: 75  TPHRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIH 134

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR---DDVK 146
           A + +  + +AR++F++ P K  + + ++ MI  Y       AA+ LFR ++      ++
Sbjct: 135 ANAKAGMIHIARKLFDQMPEK--NVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLR 192

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           P+ FT +SVLSA A +    +    +H  + K+G  +   +  +LI +Y KC S      
Sbjct: 193 PNEFTMSSVLSACARL-GALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGS------ 245

Query: 207 RSLMGAARRVFDEM-PERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265
              +  A+ +FD + PE+D ++W+ M+T +  +   +   E    M  N GV  NA+   
Sbjct: 246 ---IERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMV-NDGVRPNAV--- 298

Query: 266 YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
                             T+ +V+ AC + GL   G +    ++  E   +P   +    
Sbjct: 299 ------------------TFVAVLCACVHGGLVSEGNEYFKRMM-NEYGVSP--MIQHYG 337

Query: 326 ALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE---R 381
            +V LY + G++ +A ++   MP E D++ W A+L+     G ++  +     + E    
Sbjct: 338 CMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAITKLLELDPA 397

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           N  ++ ++ +  A+ G   E   L   M + G K
Sbjct: 398 NSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIK 431



 Score = 42.7 bits (99), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 21/186 (11%)

Query: 480 PNVDSVSWNAMIAALG----QHGNGARAIELYEQMLKEGILPDRITFLTVLSACN--HAG 533
           PN++S  WN +I A      Q+     A+ LY +M    +LPD  TF  +L + N  H G
Sbjct: 20  PNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQSINTPHRG 79

Query: 534 LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEAL 593
                 R         G+          I++    G  + A+   D +  +P  P W A+
Sbjct: 80  ------RQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEIT-QPDLPSWNAI 132

Query: 594 LAGCRIHGNIDLG-IQAAEQLFQLMPH-HAGTYVLLSNMYANLGRWDDAARV-RKLMRDR 650
                IH N   G I  A +LF  MP  +  ++  + + Y + G +  A  + R L    
Sbjct: 133 -----IHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLE 187

Query: 651 GVKKEP 656
           G +  P
Sbjct: 188 GSQLRP 193


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/622 (36%), Positives = 350/622 (56%), Gaps = 63/622 (10%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER-DELSWT 229
           Q+H   +++G  +  + L   +  Y+  + SP       M  A +VF ++ +  +   W 
Sbjct: 35  QIHAFSIRNGVSISDAELGKHLIFYLVSLPSP-----PPMSYAHKVFSKIEKPINVFIWN 89

Query: 230 TMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVI 289
           T++ GY +                 +G   N++ +  ++RE++     ++ D  TY  ++
Sbjct: 90  TLIRGYAE-----------------IG---NSVSAVSLYREMRASGF-VEPDTHTYPFLL 128

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
            A       RLG+ +H+ ++R+         + V N+L+ LY  CG V  A  +F++MPE
Sbjct: 129 KAVGKMADVRLGETIHSVVIRSGFGSL----IYVQNSLLHLYANCGDVASAYKVFDKMPE 184

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
           +DLV+WN+++                               +G A+NG  EE L L+++M
Sbjct: 185 KDLVAWNSVI-------------------------------NGFAENGKPEEALALYTEM 213

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
            L+G KP  +     +++CA +GAL  G++ H  ++  G   +L + N L+ +YARCG V
Sbjct: 214 DLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRV 273

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM-LKEGILPDRITFLTVLSA 528
           E A  +F+ M + +SVSW ++I  L  +G G  AIEL++ M  KEG+LP  ITF+ +L A
Sbjct: 274 EEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYA 333

Query: 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
           C+H G+VKEG  YF  M   Y I P  +H+   +DLL RAG+  +A + I  +P +P+  
Sbjct: 334 CSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVV 393

Query: 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648
           IW  LL  C +HG+ DL   A  ++ QL P+H+G YVLLSNMYA+  RW D  ++RK M 
Sbjct: 394 IWRTLLGACTVHGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQML 453

Query: 649 DRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLH 708
             GV+K PG S +EV N+VH FL+ D +HP+   +Y  L+++   +R  GYVP    V  
Sbjct: 454 RDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDMIYAKLKEMTDRLRLEGYVPQISNVYV 513

Query: 709 DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREI 768
           D+E ++KE AL  HSEK+A+AF L+  P    +RV+KNL++C DCH A K +SKV  REI
Sbjct: 514 DVEEEEKENALVYHSEKIAIAFMLISTPERWPIRVVKNLKVCADCHLAIKLVSKVYNREI 573

Query: 769 VVRDGKRFHHFRDGKCSCGDYW 790
           VVRD  RFHHF++G CSC DYW
Sbjct: 574 VVRDRSRFHHFKNGSCSCQDYW 595



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 185/403 (45%), Gaps = 70/403 (17%)

Query: 100 AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD-VKPDNFTFTSVLSA 158
           A ++F+K   K  +   +N +I  Y+   N  +A+ L+R+MR    V+PD  T+  +L A
Sbjct: 72  AHKVFSKIE-KPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKA 130

Query: 159 LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFD 218
           +  +  + +    +H  V++SG G    V N+L+ +Y  C           + +A +VFD
Sbjct: 131 VGKMA-DVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGD---------VASAYKVFD 180

Query: 219 EMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRI 278
           +MPE+D ++W +++ G+ +N   + A                  ++ Y   +LK     I
Sbjct: 181 KMPEKDLVAWNSVINGFAENGKPEEA------------------LALYTEMDLK----GI 218

Query: 279 QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
           + D FT  S++SACA  G   LGK+ H Y+++         +L  +N L+ LY +CG+V 
Sbjct: 219 KPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTR----NLHSSNVLLDLYARCGRVE 274

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGY 398
           EA+ +F++M +++ VSW +++      GL  EA  LF+ M  +                 
Sbjct: 275 EAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESK----------------- 317

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGN 457
                        EG  PC+  F G + +C+  G ++ G +   ++      +  +    
Sbjct: 318 -------------EGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFG 364

Query: 458 ALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
            ++ + AR G V+ A      MP   + V W  ++ A   HG+
Sbjct: 365 CMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGD 407



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 148/345 (42%), Gaps = 42/345 (12%)

Query: 34  ARSVHAHMISSGF-KPREHIINRLIDIYCKSLKLVYARTLFDEIPQPD----IVARTTLI 88
           A S++  M +SGF +P  H    L+    K   +    T+   + +      I  + +L+
Sbjct: 104 AVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLL 163

Query: 89  AAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPD 148
             Y+   +V  A ++F+K P K  D V +N++I  ++ N     A+ L+ +M    +KPD
Sbjct: 164 HLYANCGDVASAYKVFDKMPEK--DLVAWNSVINGFAENGKPEEALALYTEMDLKGIKPD 221

Query: 149 NFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
            FT  S+LSA A I        + H  ++K G        N L+ +Y +C          
Sbjct: 222 GFTIVSLLSACAKI-GALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARC---------G 271

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
            +  A+ +FDEM +++ +SWT+++ G   N     A E    M    G+           
Sbjct: 272 RVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPC-------- 323

Query: 269 RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALV 328
                        E T+  ++ AC++ G+ + G +   Y  R   +   E  +     +V
Sbjct: 324 -------------EITFVGILYACSHCGMVKEGFE---YFRRMSEEYKIEPRIEHFGCMV 367

Query: 329 TLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAK 372
            L  + G+V +A +   +MP + ++V W  +L A    G  D A+
Sbjct: 368 DLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLAE 412



 Score = 48.1 bits (113), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 61/154 (39%), Gaps = 46/154 (29%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           +L +  H +MI  G     H  N L+D+Y +  ++  A+TLFDE+   + V+ T+LI   
Sbjct: 239 TLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGL 298

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMR-RDDVKPDNF 150
           +                                  N  G  AIELF++M  ++ + P   
Sbjct: 299 AV---------------------------------NGLGKEAIELFKNMESKEGLLPCEI 325

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLF 184
           TF  +L A +            HC +VK G   F
Sbjct: 326 TFVGILYACS------------HCGMVKEGFEYF 347


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 255/761 (33%), Positives = 385/761 (50%), Gaps = 80/761 (10%)

Query: 36   SVHAHMISSGFKPREHIINRLID----IYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
            S+   M   G  P EH I+ L+     + C    LV    +              LI+ Y
Sbjct: 403  SLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFY 462

Query: 92   SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
            + S+ +  A  +FN+ P   +DT+ +N++I+  S N     AIELF  M     + D+ T
Sbjct: 463  AKSNMIGDAVLVFNRMP--RQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVT 520

Query: 152  FTSVLSALALIVEEEKQCMQ---MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
              SVL A A    + +       +H   VK+G    TS+ NAL+ +Y  C         S
Sbjct: 521  LLSVLPACA----QSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNC---------S 567

Query: 209  LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
               +  ++F  M +++ +SWT M+T Y++    D     L                    
Sbjct: 568  DWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQ------------------- 608

Query: 269  RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALV 328
               +M++  I+ D F  TS + A A     + GK VH Y +R       E  LPV NAL+
Sbjct: 609  ---EMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGM----EKLLPVANALM 661

Query: 329  TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV 388
             +Y KC  V                               +EA+ +F+ +  ++++SW  
Sbjct: 662  EMYVKCRNV-------------------------------EEARLIFDRVTNKDVISWNT 690

Query: 389  MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG 448
            +I G ++N +  E   LFS M L+ F+P        + + A + +LE GR++HA  +  G
Sbjct: 691  LIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAASISSLERGREIHAYALRRG 749

Query: 449  YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
            +     A NAL+ MY +CG +  A  +F+ +   + +SW  MIA  G HG G  AI L+E
Sbjct: 750  FLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFE 809

Query: 509  QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568
            QM   GI PD  +F  +L AC H+GL  EGRR+F+ M   Y I P   HY   +DLL R 
Sbjct: 810  QMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRT 869

Query: 569  GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628
            G   EA + I+S+P +P + IW +LL GCRIH N+ L  + A+++F+L P + G YVLL+
Sbjct: 870  GDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLA 929

Query: 629  NMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLE 688
            N+YA   RW+   +++  +  RG+++  G SWIEV +KVHVF+ D+  HP+   + ++L+
Sbjct: 930  NIYAEAERWEAVKKLKNKIGGRGLRENTGYSWIEVRSKVHVFIADNRNHPDWNRIAEFLD 989

Query: 689  QLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLR 748
             +   MR+ G+ P  K+ L   +    + AL  HS KLAVAFG++ LP G  +RV KN +
Sbjct: 990  DVARRMRQEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGVLNLPEGRPIRVTKNSK 1049

Query: 749  ICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
            +C  CH A KF+SK+  REI++RD  RFH F  G+CSC  Y
Sbjct: 1050 VCSHCHEAAKFISKMCNREIILRDSSRFHRFEGGRCSCRGY 1090



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 134/472 (28%), Positives = 210/472 (44%), Gaps = 69/472 (14%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           L+ AY    ++  AR +F+  P +  D   + ++++AY+   +   A+ LFR M+   V 
Sbjct: 142 LVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVS 201

Query: 147 PDNFTFTSVL---SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
           PD    + VL   S+L  + E E     +H  + K G G   +V NALI+VY +C     
Sbjct: 202 PDAHAVSCVLKCVSSLGSLTEGE----VIHGLLEKLGLGQACAVANALIAVYSRC----- 252

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
                 M  A RVFD M  RD +SW +M+ G   N +   A +                 
Sbjct: 253 ----GRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFS-------------- 294

Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
                   KM     ++   T  SV+ ACA  G   +GK VH Y +++            
Sbjct: 295 --------KMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKS------------ 334

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER-N 382
                 L W    V    D        D    + ++  YV  G +  A+ +F+AM  + N
Sbjct: 335 -----GLLWGLDSVQSGID--------DAALGSKLVFMYVKCGDMASARRVFDAMSSKGN 381

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
           +  W +++ G A+ G  EE L LF QM   G  P ++A +  +     L    +G   H 
Sbjct: 382 VHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHG 441

Query: 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
            +V  G+ +  +  NALI+ YA+  ++  A  VFN MP  D++SWN++I+    +G  + 
Sbjct: 442 YIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSE 501

Query: 503 AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
           AIEL+ +M  +G   D +T L+VL AC  +     GR     +HG Y +  G
Sbjct: 502 AIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGR----VVHG-YSVKTG 548



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 110/438 (25%), Positives = 183/438 (41%), Gaps = 67/438 (15%)

Query: 197 KCVSSPFVSSRS--LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           K  +SP ++ R   L   A RV  E P     SW+T      KN    A       +S +
Sbjct: 23  KAATSPRITFRCSVLAAPAGRVL-EAPTAAPSSWST------KNPPSRA-------LSSD 68

Query: 255 VGVAWNALI-SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
           V +    L  +G +   L++L     +D  +Y  V+  C         K+ HA +  + A
Sbjct: 69  VNLRIQRLCQAGDLAGALRLLGSDGGVDVRSYCMVVQLCGEERSLEAAKRAHALIRASSA 128

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
             T      +   LV  Y KCG                                + EA++
Sbjct: 129 AATGGKGSVLGKRLVLAYLKCGD-------------------------------LGEART 157

Query: 374 LFEAM--RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
           +F+ M  +  ++  WT ++S  A+ G  +E + LF QM+  G  P  +A +  +   + L
Sbjct: 158 VFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSL 217

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
           G+L  G  +H  L   G   + +  NALI +Y+RCG +E A  VF++M   D++SWN+MI
Sbjct: 218 GSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMI 277

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG---P 548
                +G    A++L+ +M  +G     +T L+VL AC   G    G+     +HG    
Sbjct: 278 GGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGK----AVHGYSVK 333

Query: 549 YGIPPGEDHYARFID----------LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCR 598
            G+  G D     ID          +  + G  + A+ V D++  K +  +W  ++ G  
Sbjct: 334 SGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYA 393

Query: 599 IHGNIDLGIQAAEQLFQL 616
             G  +  +    Q+ +L
Sbjct: 394 KVGEFEESLSLFVQMHEL 411



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 109/444 (24%), Positives = 179/444 (40%), Gaps = 96/444 (21%)

Query: 179 SGTGLFTSVLNA-LISVYVKCVSSPFVSSRSLMGAARRVFDEMPER--DELSWTTMMTGY 235
           + TG   SVL   L+  Y+KC           +G AR VFD MP +  D   WT++M+ Y
Sbjct: 129 AATGGKGSVLGKRLVLAYLKCGD---------LGEARTVFDGMPPQAADVRVWTSLMSAY 179

Query: 236 VK-NDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACAN 294
            K  D+ +A   F                        +M    +  D    + V+   ++
Sbjct: 180 AKAGDFQEAVSLFR-----------------------QMQCCGVSPDAHAVSCVLKCVSS 216

Query: 295 SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS 354
            G    G+ +H  L     K     +  V NAL+ +Y +CG+                  
Sbjct: 217 LGSLTEGEVIHGLL----EKLGLGQACAVANALIAVYSRCGR------------------ 254

Query: 355 WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF 414
                        +++A  +F++M  R+ +SW  MI G   NG+    + LFS+M  +G 
Sbjct: 255 -------------MEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGT 301

Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHS----GYDSSLSA------GNALITMYA 464
           +         + +CAGLG    G+ +H   V S    G DS  S       G+ L+ MY 
Sbjct: 302 EISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYV 361

Query: 465 RCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGNGARAIELYEQMLKEGILPDR---- 519
           +CG + +A  VF+ M +  +V  WN ++    + G    ++ L+ QM + GI PD     
Sbjct: 362 KCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAIS 421

Query: 520 --ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577
             +  +T LS C   GLV  G  Y   +    G           I    ++    +A  V
Sbjct: 422 CLLKCITCLS-CARDGLVAHG--YIVKL----GFGAQCAVCNALISFYAKSNMIGDAVLV 474

Query: 578 IDSLPFKPSAPIWEALLAGCRIHG 601
            + +P + +   W ++++GC  +G
Sbjct: 475 FNRMPRQDTIS-WNSVISGCSSNG 497



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 136/327 (41%), Gaps = 70/327 (21%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            +SVH + I +G +    + N L+++Y K   +  AR +FD +   D+++  TLI     
Sbjct: 638 GKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIG---- 693

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                                         YS N+  + +  LF DM     +P+  T T
Sbjct: 694 -----------------------------GYSRNNFPNESFSLFSDMLL-QFRPNAVTMT 723

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
            +L A A I   E+   ++H   ++ G    +   NAL+ +YVKC           +  A
Sbjct: 724 CILPAAASISSLERG-REIHAYALRRGFLEDSYASNALVDMYVKC---------GALLVA 773

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           R +FD + +++ +SWT M+ GY  + +   A    + M            SG        
Sbjct: 774 RVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRG----------SG-------- 815

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
               I+ D  ++++++ AC +SGL   G++     ++ E K  P+  L     +V L  +
Sbjct: 816 ----IEPDAASFSAILYACCHSGLAAEGRRFFK-AMQKEYKIEPK--LKHYTCIVDLLSR 868

Query: 334 CGKVNEARDIFNQMP-ERDLVSWNAIL 359
            G + EA +    MP E D   W ++L
Sbjct: 869 TGDLKEALEFIESMPIEPDSSIWVSLL 895



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 108/250 (43%), Gaps = 30/250 (12%)

Query: 25  PRNPITSSL--ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIV 82
           P     SSL   R +HA+ +  GF    +  N L+D+Y K   L+ AR LFD + + +++
Sbjct: 727 PAAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLI 786

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMR------DTVFYNAMITAYSHNSNGHAAIEL 136
           + T +IA Y      K A  +F     +MR      D   ++A++ A  H+         
Sbjct: 787 SWTIMIAGYGMHGFGKHAIALFE----QMRGSGIEPDAASFSAILYACCHSGLAAEGRRF 842

Query: 137 FRDMRRD-DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL-ISV 194
           F+ M+++  ++P    +T ++  L+   + ++    +    ++  + ++ S+L+   I  
Sbjct: 843 FKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHK 902

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD----- 249
            VK               A +VF   PE     +  +   Y + +  +A ++  +     
Sbjct: 903 NVKLAEK----------VADKVFKLEPENTGY-YVLLANIYAEAERWEAVKKLKNKIGGR 951

Query: 250 GMSENVGVAW 259
           G+ EN G +W
Sbjct: 952 GLRENTGYSW 961


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 248/695 (35%), Positives = 366/695 (52%), Gaps = 99/695 (14%)

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMH 173
            V + A I+  + ++   AA+  F  M R  ++P++FTF S   A A        C    
Sbjct: 76  VVSFTAFISGAAQHARPLAALSAFAAMLRVGLRPNDFTFPSAFKAAA--------CAPPR 127

Query: 174 CTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL--------MGAARRVFDEMPERDE 225
           C+ V          ++AL   +      PFVS  ++        +G ARR+F+EMP R+ 
Sbjct: 128 CSTVGPQ-------IHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNV 180

Query: 226 LSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV--HRELKMLMLRIQLDE- 282
                                          +AWNA+++  V   R L+       L E 
Sbjct: 181 -------------------------------IAWNAVMTNAVIDGRPLETFKAYFGLREA 209

Query: 283 ------FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
                  +  +  +ACA +    LG+Q H +++        +  + V+NA+V  Y KC  
Sbjct: 210 GGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGF----DMDVSVSNAMVDFYGKCRC 265

Query: 337 VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
             +AR                               ++F+ MR RN +SW  MI   AQ+
Sbjct: 266 AGKAR-------------------------------AVFDGMRVRNSVSWCSMIVAYAQH 294

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
           G  E+ L ++   R  G +P D+  +  +T+CAGL  L  GR LHA  V S  D+++   
Sbjct: 295 GAEEDALAVYMGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVA 354

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG-I 515
           +AL+ MY +CG VE A  VF  MP  + V+WNAMI      G+   A+ +++ M++ G  
Sbjct: 355 SALVDMYGKCGGVEDAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGT 414

Query: 516 LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAK 575
            P+ IT + V++AC+  GL K+G   F+TM   +G+ P  +HYA  +DLL RAG    A 
Sbjct: 415 SPNHITLVNVITACSRGGLTKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAY 474

Query: 576 DVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLG 635
           ++I  +P +PS  +W ALL  C++HG  +LG  A+E+LF+L P  +G +VLLSNM A+ G
Sbjct: 475 EIIQRMPMRPSISVWGALLGACKMHGKTELGRIASEKLFELDPQDSGNHVLLSNMLASAG 534

Query: 636 RWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMR 695
           RW +A  VRK M++ G+KKEPGCSWI   N VHVF   DT H     +   L +L  +M+
Sbjct: 535 RWAEATDVRKEMKNVGIKKEPGCSWITWKNVVHVFYAKDTKHDRNSEIQALLAKLKKQMQ 594

Query: 696 KLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHN 755
             GY+PDT++ L+D+E ++KE  +  HSEKLA+AFGL+ +P    +R+ KNLRIC DCH 
Sbjct: 595 ASGYMPDTQYSLYDVEEEEKETEVFQHSEKLALAFGLIHIPPSVPIRITKNLRICVDCHR 654

Query: 756 AFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           AFKF+S +VGREI+VRD  RFH+F+  +CSC DYW
Sbjct: 655 AFKFVSGIVGREIIVRDNNRFHYFKQFECSCKDYW 689



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 117/488 (23%), Positives = 196/488 (40%), Gaps = 122/488 (25%)

Query: 23  CDPRNPITSSLARSVHAHMISSGFKPREHIIN-RLIDIYCKSLKLVYARTLFDEIPQPDI 81
           C P  P  S++   +HA  +  G+ P +  ++   +D+Y K+  L  AR LF+E+P    
Sbjct: 123 CAP--PRCSTVGPQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPN--- 177

Query: 82  VARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMR 141
                                         R+ + +NA++T    +       + +  +R
Sbjct: 178 ------------------------------RNVIAWNAVMTNAVIDGRPLETFKAYFGLR 207

Query: 142 RDDVKPDNFT----FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
                P+  +    F +   A+ L + E     Q H  VV  G  +  SV NA++  Y K
Sbjct: 208 EAGGMPNVVSVCAFFNACAGAMFLSLGE-----QFHGFVVTCGFDMDVSVSNAMVDFYGK 262

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C  +         G AR VFD M  R+ +SW +M+  Y ++   + A     G + N G 
Sbjct: 263 CRCA---------GKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMG-ARNTGE 312

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                                +  +F  +SV++ CA       G+ +HA  +R+      
Sbjct: 313 ---------------------EPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRS----CI 347

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
           + ++ V +ALV +Y KCG V +A  +F  MPER+LV+WNA++  Y   G    A ++F+A
Sbjct: 348 DANIFVASALVDMYGKCGGVEDAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDA 407

Query: 378 M-----RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSCAGL 431
           M        N ++   +I+  ++ G  ++G +LF  MR   G +P               
Sbjct: 408 MIRSGGTSPNHITLVNVITACSRGGLTKDGYELFDTMRERFGVEP--------------- 452

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAM 490
                 R  H   V              + +  R G+ E A  +   MP   S+S W A+
Sbjct: 453 ------RTEHYACV--------------VDLLGRAGMEERAYEIIQRMPMRPSISVWGAL 492

Query: 491 IAALGQHG 498
           + A   HG
Sbjct: 493 LGACKMHG 500



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 88/390 (22%), Positives = 153/390 (39%), Gaps = 75/390 (19%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           SL    H  +++ GF     + N ++D Y K      AR +FD                 
Sbjct: 232 SLGEQFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDG---------------- 275

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                            +++R++V + +MI AY+ +     A+ ++   R    +P +F 
Sbjct: 276 -----------------MRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTDFM 318

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
            +SVL+  A ++        +H   V+S       V +AL+ +Y KC           + 
Sbjct: 319 VSSVLTTCAGLLGLNFG-RALHAVAVRSCIDANIFVASALVDMYGKCGG---------VE 368

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A +VF +MPER+ ++W  M+ GY        A    D M  + G + N           
Sbjct: 369 DAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPN----------- 417

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL-RTEAKPTPEFSLPVNNALVTL 330
                       T  +VI+AC+  GL + G ++   +  R   +P  E    V    V L
Sbjct: 418 ----------HITLVNVITACSRGGLTKDGYELFDTMRERFGVEPRTEHYACV----VDL 463

Query: 331 YWKCGKVNEARDIFNQMPERDLVS-WNAILSAYVSAGLID----EAKSLFEAMRERNLLS 385
             + G    A +I  +MP R  +S W A+L A    G  +     ++ LFE +  ++  +
Sbjct: 464 LGRAGMEERAYEIIQRMPMRPSISVWGALLGACKMHGKTELGRIASEKLFE-LDPQDSGN 522

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
             ++ + LA  G   E   +  +M+  G K
Sbjct: 523 HVLLSNMLASAGRWAEATDVRKEMKNVGIK 552


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 197/435 (45%), Positives = 280/435 (64%), Gaps = 1/435 (0%)

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
            +++ Y + G ID ++ +F+ + E  ++++  +I  LA+N    E L LF +++  G KP
Sbjct: 152 TLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLARNNRANEALALFRELQEIGLKP 211

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
            D      ++SCA LG+L+ GR +H  +   G+D  +     LI MYA+CG ++ A  VF
Sbjct: 212 TDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVF 271

Query: 477 NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536
             MP  D+ +W+A+I A   HG+G +AI +  +M KE + PD ITFL +L AC+H GLV+
Sbjct: 272 RDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEITFLGILYACSHNGLVE 331

Query: 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           EG  YF  M   YGI P   HY   +DLL RAG+  EA   ID LP KP+  +W  LL+ 
Sbjct: 332 EGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSA 391

Query: 597 CRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEP 656
           C  HGN+++G +  E++F+L   H G YV+ SN+ A  G+WDD   +RK M D+G  K P
Sbjct: 392 CSTHGNVEMGKRVIERIFELDDSHGGDYVIFSNLCARYGKWDDVNHLRKTMIDKGAVKIP 451

Query: 657 GCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLH-DMESDQK 715
           GCS IEV+N VH F   +  H  +  +++ L++LV E++  GYVPDT  V + DME ++K
Sbjct: 452 GCSSIEVNNVVHEFFAGEGVHSTSTTLHRALDELVKELKSAGYVPDTSLVFYADMEDEEK 511

Query: 716 EYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKR 775
           E  L  HSEKLA+ FGL+  P G T+RV+KNLR+CGDCHNA KF+S + GR+I++RD +R
Sbjct: 512 EIILRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHNAAKFISLIFGRQIILRDVQR 571

Query: 776 FHHFRDGKCSCGDYW 790
           FHHF+DGKCSCGDYW
Sbjct: 572 FHHFKDGKCSCGDYW 586



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 109/480 (22%), Positives = 195/480 (40%), Gaps = 125/480 (26%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKS----LKLVYARTLFDEIPQPDIVARTTLIAA 90
           + + A+ I + ++   ++I + I+ +C S      + +A  LFD+I QP+IV   T+   
Sbjct: 43  KQIQAYTIKTNYQNNTNVITKFIN-FCTSNPTKASMEHAHQLFDQITQPNIVLFNTMARG 101

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
           Y+  ++           PL+M                      I  FR   R        
Sbjct: 102 YARLND-----------PLRM----------------------ITHFRRCLR-------- 120

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
              S + ALA       +  Q+HC  VK G      V+  LI++Y  C           +
Sbjct: 121 -LVSKVKALA-------EGKQLHCFAVKLGVSDNMYVVPTLINMYTACGD---------I 163

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
            A+RRVFD++ E   +++  ++    +N+  + A                        RE
Sbjct: 164 DASRRVFDKIDEPCVVAYNAIIMSLARNNRANEALALF--------------------RE 203

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
           L+ + L+    + T   V+S+CA  G   LG+ +H Y+     K   +  + VN  L+ +
Sbjct: 204 LQEIGLKPT--DVTMLVVLSSCALLGSLDLGRWMHEYV----KKYGFDRYVKVNTTLIDM 257

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y KCG +++A ++F  MP+RD  +W+AI+ AY                            
Sbjct: 258 YAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAY---------------------------- 289

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ-LHAQLVHSGY 449
              A +G G + + + ++M+ E  +P +  F G + +C+  G +E G +  H      G 
Sbjct: 290 ---ATHGDGFQAISMLNEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGI 346

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN---GARAIE 505
             S+     ++ +  R G ++ A    + +P     + W  +++A   HGN   G R IE
Sbjct: 347 VPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIE 406



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 138/296 (46%), Gaps = 38/296 (12%)

Query: 86  TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
           TLI  Y+A  ++  +R +F+K  +     V YNA+I + + N+  + A+ LFR+++   +
Sbjct: 152 TLINMYTACGDIDASRRVFDK--IDEPCVVAYNAIIMSLARNNRANEALALFRELQEIGL 209

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVS 205
           KP + T   VLS+ AL+   +     MH  V K G   +  V   LI +Y KC S     
Sbjct: 210 KPTDVTMLVVLSSCALLGSLDLG-RWMHEYVKKYGFDRYVKVNTTLIDMYAKCGS----- 263

Query: 206 SRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265
               +  A  VF +MP+RD  +W+ ++  Y  +     A   L+ M +            
Sbjct: 264 ----LDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKE----------- 308

Query: 266 YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
                      ++Q DE T+  ++ AC+++GL   G + + + +  E    P  S+    
Sbjct: 309 -----------KVQPDEITFLGILYACSHNGLVEEGFE-YFHGMTNEYGIVP--SIKHYG 354

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDL-VSWNAILSAYVSAGLIDEAKSLFEAMRE 380
            +V L  + G+++EA    +++P +   + W  +LSA  + G ++  K + E + E
Sbjct: 355 CMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFE 410



 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 143/317 (45%), Gaps = 38/317 (11%)

Query: 313 AKPTPEFS--LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV------- 363
            KP  E +  LP+ + L++L  KC  + E + I     + +  +   +++ ++       
Sbjct: 14  TKPNTETTSLLPLPH-LISLIPKCTTLKELKQIQAYTIKTNYQNNTNVITKFINFCTSNP 72

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
           +   ++ A  LF+ + + N++ +  M  G A+     + L++ +      F+ C      
Sbjct: 73  TKASMEHAHQLFDQITQPNIVLFNTMARGYAR---LNDPLRMITH-----FRRC------ 118

Query: 424 AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
            +   + + AL  G+QLH   V  G   ++     LI MY  CG ++A+  VF+ +    
Sbjct: 119 -LRLVSKVKALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPC 177

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFE 543
            V++NA+I +L ++     A+ L+ ++ + G+ P  +T L VLS+C   G +  GR   E
Sbjct: 178 VVAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHE 237

Query: 544 TMHGPYGIPPGEDHYAR----FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI 599
                Y    G D Y +     ID+  + G   +A +V   +P K     W A++     
Sbjct: 238 -----YVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMP-KRDTQAWSAIIVAYAT 291

Query: 600 HGNIDLGIQAAEQLFQL 616
           HG+   G QA   L ++
Sbjct: 292 HGD---GFQAISMLNEM 305



 Score = 44.3 bits (103), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 35/135 (25%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R +H ++   GF     +   LID+Y K   L  A  +F ++P+ D  A         
Sbjct: 231 LGRWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQA--------- 281

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                   ++A+I AY+ + +G  AI +  +M+++ V+PD  TF
Sbjct: 282 ------------------------WSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEITF 317

Query: 153 TSVLSALAL--IVEE 165
             +L A +   +VEE
Sbjct: 318 LGILYACSHNGLVEE 332


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/683 (33%), Positives = 376/683 (55%), Gaps = 69/683 (10%)

Query: 110 KMRDTVFYNAMITAYSHNSNGHAAIELFRDM-RRDDVKPDNFTFTSVLSALALIVEEEKQ 168
           ++ D + +N+M+ A+ +++    A++ + +M  R    PD FTF S+L   AL++E  K 
Sbjct: 39  RVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEF-KV 97

Query: 169 CMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSW 228
              +H  VVK        +   L+++Y  C           + +AR +F+ M  R+++ W
Sbjct: 98  GKVLHGQVVKYMLHSDLYIETTLLNMYAACGD---------LKSARFLFERMGHRNKVVW 148

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSV 288
           T+M++GY+KN   + A      M E+          G+              DE T  ++
Sbjct: 149 TSMISGYMKNHCPNEALLLYKKMEED----------GF------------SPDEVTMATL 186

Query: 289 ISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
           +SACA      +G ++H+++   + K        + +ALV +Y KCG +  AR +     
Sbjct: 187 VSACAELKDLGVGMKLHSHIREMDMK----ICAVLGSALVNMYAKCGDLKTARQV----- 237

Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQ 408
                                     F+ + ++++ +W+ +I G  +N    E L+LF +
Sbjct: 238 --------------------------FDQLSDKDVYAWSALIFGYVKNNRSTEALQLFRE 271

Query: 409 MRL-EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467
           +      +P +      I++CA LG LE GR +H  +  +    S+S  N+LI M+++CG
Sbjct: 272 VAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCG 331

Query: 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
            ++AA  +F++M   D +SWN+M+  L  HG G  A+  +  M    + PD ITF+ VL+
Sbjct: 332 DIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLT 391

Query: 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSA 587
           AC+HAGLV+EG++ F  +   YG+    +HY   +DLLCRAG  +EA++ I  +P +P  
Sbjct: 392 ACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDG 451

Query: 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647
            IW ++L  CR++ N++LG +AA  L +L P + G Y+LLSN+YA    W++  +VR+LM
Sbjct: 452 AIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVRELM 511

Query: 648 RDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVL 707
            ++G++K PGCS + +DN  H FL  D +HPE   +   L Q+  +++ +GYV DT  VL
Sbjct: 512 NEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLVGYVADTSEVL 571

Query: 708 HDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGRE 767
            +++ ++KE ++S HSEKLA+ +GL+K   G  + +LKNLR+C DCH   K +SK+  R+
Sbjct: 572 LNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQ 631

Query: 768 IVVRDGKRFHHFRDGKCSCGDYW 790
           I +RD  RFHHF+DG CSC DYW
Sbjct: 632 ITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 201/425 (47%), Gaps = 72/425 (16%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
             D+   TTL+  Y+A  ++K AR +F +  +  R+ V + +MI+ Y  N   + A+ L+
Sbjct: 111 HSDLYIETTLLNMYAACGDLKSARFLFER--MGHRNKVVWTSMISGYMKNHCPNEALLLY 168

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           + M  D   PD  T  +++SA A + ++    M++H  + +    +   + +AL+++Y K
Sbjct: 169 KKMEEDGFSPDEVTMATLVSACAEL-KDLGVGMKLHSHIREMDMKICAVLGSALVNMYAK 227

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C           +  AR+VFD++ ++D  +W+ ++ GYVKN   + + E L    E  G 
Sbjct: 228 CGD---------LKTARQVFDQLSDKDVYAWSALIFGYVKN---NRSTEALQLFREVAGG 275

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
           +                   ++ +E T  +VISACA  G    G+ VH Y+ RT+     
Sbjct: 276 S------------------NMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKG--- 314

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
             S+ +NN+L+ ++ KCG ++ A+ IF+ M  +DL+SWN+                    
Sbjct: 315 -HSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNS-------------------- 353

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
                      M++GLA +G G E L  F  M+    +P +  F G +T+C+  G ++ G
Sbjct: 354 -----------MVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEG 402

Query: 438 RQLHAQLVHSGYDSSLSAGN--ALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAAL 494
           ++L  + + + Y   L + +   ++ +  R G++  A      MP   D   W +M+ A 
Sbjct: 403 KKLFYE-IEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGAC 461

Query: 495 GQHGN 499
             + N
Sbjct: 462 RVYNN 466



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 115/250 (46%), Gaps = 13/250 (5%)

Query: 354 SWNAILSAYVSAGL--IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
           S N +++  +S G   +  A S+F   R  ++L+W  M+     +      L+ +++M L
Sbjct: 12  SLNKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEM-L 70

Query: 412 EGFK--PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
           E  +  P  + F   +  CA L   + G+ LH Q+V     S L     L+ MYA CG +
Sbjct: 71  ERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDL 130

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           ++A  +F  M + + V W +MI+   ++     A+ LY++M ++G  PD +T  T++SAC
Sbjct: 131 KSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSAC 190

Query: 530 ---NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
                 G+  +   +   M        G    +  +++  + G    A+ V D L  K  
Sbjct: 191 AELKDLGVGMKLHSHIREMDMKICAVLG----SALVNMYAKCGDLKTARQVFDQLSDK-D 245

Query: 587 APIWEALLAG 596
              W AL+ G
Sbjct: 246 VYAWSALIFG 255


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 258/731 (35%), Positives = 396/731 (54%), Gaps = 76/731 (10%)

Query: 65   KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
            ++V+   L   +    I     L+  Y+    ++ A ++F    ++  D + +N +I+A 
Sbjct: 399  RVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQL--MEATDRISWNTIISAL 456

Query: 125  SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA-LIVEEEKQCMQMHCTVVKSGTGL 183
              N N   A+  +  MR+  + P NF   S LS+ A L +    Q  Q+HC  VK G  L
Sbjct: 457  DQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQ--QVHCDAVKWGLDL 514

Query: 184  FTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDA 243
             TSV N L+ +Y +C           M    +VF+ M E DE+SW TMM     +     
Sbjct: 515  DTSVSNVLVKMYGEC---------GAMSDYWKVFNSMAEHDEVSWNTMMGVMASSQ---- 561

Query: 244  AREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ 303
                   +SE V V  N +  G +             ++ T+ ++++A +   +  LGKQ
Sbjct: 562  -----TPISEIVKVFNNMMRGGLIP------------NKVTFINLLAALSPLSVLELGKQ 604

Query: 304  VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV 363
            VHA +++                                  + + E ++V  NA++S Y 
Sbjct: 605  VHAAVMK----------------------------------HGVMEDNVVD-NALISCYA 629

Query: 364  SAGLIDEAKSLFEAMRER-NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
             +G +   + LF  M +R + +SW  MISG   NG  +E +     M   G       F+
Sbjct: 630  KSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGNLQEAMDCVWLMIHSGQIMDCCTFS 689

Query: 423  GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
              + +CA + ALE G +LHA  + S  +S +   +AL+ MY++CG V+ A+ +FN+M   
Sbjct: 690  IILNACASVAALERGMELHAFGIRSHLESDVVVESALVDMYSKCGRVDYASKLFNSMTQR 749

Query: 483  DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
            +  SWN+MI+   +HG G +AIE++E+ML+    PD +TF++VLSAC+HAGLV+ G  YF
Sbjct: 750  NEFSWNSMISGYARHGLGRKAIEIFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLEYF 809

Query: 543  ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH-- 600
            E M   +GI P  +HY+  IDLL RAGK  + K+ I  +P +P+A IW  +L  CR    
Sbjct: 810  EMM-PDHGILPQIEHYSCVIDLLGRAGKIDKIKEYIQRMPIEPNALIWRTVLVACRQSKD 868

Query: 601  -GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCS 659
              NIDLG +A+  L ++ P +   YVL SN +A  G W+D A+ R  MR    KKE G S
Sbjct: 869  GSNIDLGREASRVLLEIEPQNPVNYVLASNFHAATGMWEDTAKARTAMRQATEKKEAGRS 928

Query: 660  WIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYAL 719
            W+ +++ VH F+  D +HP  + +Y+ L  L+  +R  GYVP T++ L+D+E + KE  L
Sbjct: 929  WVTLNDGVHTFIAGDRSHPNTKEIYEKLNFLIQNIRNAGYVPLTEYALYDLEEENKEELL 988

Query: 720  STHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHF 779
            S HSEKLA+AF L +   G  +R++KNLR+CGDCH AF+++S+++ R+I++RD  RFHHF
Sbjct: 989  SYHSEKLAIAFVLTRSSSGP-IRIMKNLRVCGDCHIAFRYISQMISRQIILRDSIRFHHF 1047

Query: 780  RDGKCSCGDYW 790
            +DGKCSCGDYW
Sbjct: 1048 KDGKCSCGDYW 1058



 Score =  183 bits (464), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 133/530 (25%), Positives = 239/530 (45%), Gaps = 82/530 (15%)

Query: 99  LAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD----VKPDNFTFTS 154
           LA+ +F+ TP+  RD + +NA+++ Y+   +  +   LF+DM+R D    ++P   TF S
Sbjct: 222 LAQRVFDGTPI--RDLITWNALMSVYAKKGDVASTFTLFKDMQRGDSRIQLRPTEHTFGS 279

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           +++A +L         Q+   V+KSG      V +AL+S + +           L   A+
Sbjct: 280 LITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSALVSAFAR---------HGLTDEAK 330

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
            +F  + +++ ++   ++ G V+ D+ + A +   G    V V                 
Sbjct: 331 DIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNTVDV----------------- 373

Query: 275 MLRIQLDEFTYTSVISACANSGL----FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
                 +  TY  ++SA A   +     R+G+ VH ++LRT      +  + V+N LV +
Sbjct: 374 ------NADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRT---GLTDLKIAVSNGLVNM 424

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y KCG +  A  IF  M   D +SWN I+SA                             
Sbjct: 425 YAKCGAIESASKIFQLMEATDRISWNTIISA----------------------------- 455

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
             L QNG  EE +  +S MR     P ++A   +++SCAGL  L  G+Q+H   V  G D
Sbjct: 456 --LDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLD 513

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG-ARAIELYEQ 509
              S  N L+ MY  CG +     VFN+M   D VSWN M+  +       +  ++++  
Sbjct: 514 LDTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNN 573

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
           M++ G++P+++TF+ +L+A +   +++ G++    +   +G+          I    ++G
Sbjct: 574 MMRGGLIPNKVTFINLLAALSPLSVLELGKQVHAAVM-KHGVMEDNVVDNALISCYAKSG 632

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
                + +  ++  +  A  W ++++G   +GN    +Q A     LM H
Sbjct: 633 DMGSCEHLFTNMSDRRDAISWNSMISGYIYNGN----LQEAMDCVWLMIH 678



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 133/516 (25%), Positives = 228/516 (44%), Gaps = 106/516 (20%)

Query: 36  SVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASD 95
           ++H  +I  G      + N L++ Y K  +L  A  +FDE+P+                 
Sbjct: 82  NLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPE----------------- 124

Query: 96  NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD---DVKPDNFTF 152
                           R+ V +  +++ Y  +     A  +FR M R+     +P +FTF
Sbjct: 125 ----------------RNAVSWTCLVSGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTF 168

Query: 153 TSVLSALALIVEEEKQ-CMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
            ++L A      +     +Q+H  V K+     T+V NALIS+Y  C   P +       
Sbjct: 169 GTLLRACQDGGPDRLGFAVQVHGLVSKTEYASNTTVCNALISMYGSCTVGPPI------- 221

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A+RVFD  P RD ++W  +M+ Y K    D A  F                   + +++
Sbjct: 222 LAQRVFDGTPIRDLITWNALMSVYAKKG--DVASTFT------------------LFKDM 261

Query: 272 KMLMLRIQL--DEFTYTSVIS-ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALV 328
           +    RIQL   E T+ S+I+ A  +SG   +  QV  ++L++         L V +ALV
Sbjct: 262 QRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKSGCSS----DLYVGSALV 317

Query: 329 TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR---ERNLLS 385
           + + + G  +EA+DIF  + +++ V+ N ++   V     +EA  +F   R   + N  +
Sbjct: 318 SAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNTVDVNADT 377

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
           + V++S LA+    EEGL++                               GR +H  ++
Sbjct: 378 YVVLLSALAEYSISEEGLRI-------------------------------GRVVHGHML 406

Query: 446 HSGY-DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
            +G  D  ++  N L+ MYA+CG +E+A+ +F  M   D +SWN +I+AL Q+GN   A+
Sbjct: 407 RTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAV 466

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
             Y  M +  I P     ++ LS+C    L+  G++
Sbjct: 467 MHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQ 502



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 97/197 (49%), Gaps = 11/197 (5%)

Query: 327 LVTLYWKCGKVNEARDIFNQMPER----DLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
           L+ L  + G  N   ++  ++ +R    DL   N ++++Y     +  A  +F+ M ERN
Sbjct: 67  LLPLLRRGGDANSPENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERN 126

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLE---GFKPCDYAFAGAITSC--AGLGALENG 437
            +SWT ++SG   +G  EE  ++F  M  E   G +P  + F   + +C   G   L   
Sbjct: 127 AVSWTCLVSGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFA 186

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA--ANCVFNTMPNVDSVSWNAMIAALG 495
            Q+H  +  + Y S+ +  NALI+MY  C V     A  VF+  P  D ++WNA+++   
Sbjct: 187 VQVHGLVSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYA 246

Query: 496 QHGNGARAIELYEQMLK 512
           + G+ A    L++ M +
Sbjct: 247 KKGDVASTFTLFKDMQR 263



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 3/105 (2%)

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
           G   +   LH +L+  G +  L   N L+  YA+   + AA+ VF+ MP  ++VSW  ++
Sbjct: 75  GDANSPENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLV 134

Query: 492 AALGQHGNGARAIELYEQMLKE---GILPDRITFLTVLSACNHAG 533
           +    HG    A  ++  ML+E   G  P   TF T+L AC   G
Sbjct: 135 SGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGG 179


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1038

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 263/827 (31%), Positives = 417/827 (50%), Gaps = 134/827 (16%)

Query: 32   SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
            SL R +   +I SG + +  + N LI ++     + YA  +F++I + D ++  +++AAY
Sbjct: 278  SLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAY 337

Query: 92   SASDNVKLAREMFN--------------KTPLKMRDTVFY-------------------- 117
            + + +++ +  +FN               T L +   V +                    
Sbjct: 338  AQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVV 397

Query: 118  ---NAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQ--CMQM 172
               N ++  Y+       A  +F+ M   D+   N       S +A  V + +    + +
Sbjct: 398  CVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWN-------SLMASFVNDGRSLDALGI 450

Query: 173  HCTVVKSGTGL----FTSVLNALIS-------------VYV------KCVSSPFVSSRSL 209
             C+++++G  +    FTS L A  S             V V      + + +  VS    
Sbjct: 451  LCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGK 510

Query: 210  MGA---ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
            +G    +RRV  +MP RD ++W  ++ GY +N+  D A      +    GV+ N +    
Sbjct: 511  IGGMSTSRRVLLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVE-GVSANYI---- 565

Query: 267  VHRELKMLMLRIQLDEFTYTSVISACANSG-LFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
                             T  SV+SAC   G L   GK +HAY++    +        V N
Sbjct: 566  -----------------TVVSVLSACLVPGDLLERGKPLHAYIVSAGFESDEH----VKN 604

Query: 326  ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
            +L+T+Y KCG ++ ++D+FN +  R +++WNAIL+A    G                   
Sbjct: 605  SLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAHHG------------------- 645

Query: 386  WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
                        +GEE LKL S+MR  G     ++F+  +++ A L  LE G+QLH   V
Sbjct: 646  ------------HGEEVLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAV 693

Query: 446  HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV--SWNAMIAALGQHGNGARA 503
              G++      NA   MY++CG  E    V    P+V+    SWN +I+ALG+HG     
Sbjct: 694  KLGFELDCFIFNAAADMYSKCG--EIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEV 751

Query: 504  IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563
             E + +ML+ GI P  +TF+++L+AC+H GLV +G  Y++ +   +G+ P  +H    ID
Sbjct: 752  CETFHEMLEMGIKPGHVTFVSLLTACSHGGLVDQGLAYYDMIAKDFGLEPAIEHCICVID 811

Query: 564  LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623
            LL R+G+ +EA+  I  +P KP+  +W +LLA C+IH ++D G +AAE L +L P     
Sbjct: 812  LLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHRDLDRGRKAAENLSKLEPEDDSV 871

Query: 624  YVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAV 683
            +VL SNM+A  GRW+D   VRK M  + +KK+  CSW+++ +KV  F + D  HP+   +
Sbjct: 872  FVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEI 931

Query: 684  YKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRV 743
            Y  LE +   +++ GYV DT   L D + +QKE+ L  HSE+LA+A+ LM  P G+TVR+
Sbjct: 932  YAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVRI 991

Query: 744  LKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             KNLRIC DCH+ +KF+S+V+GR IV+RD  RFHHF  G CSC DYW
Sbjct: 992  FKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFESGLCSCKDYW 1038



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 146/592 (24%), Positives = 246/592 (41%), Gaps = 108/592 (18%)

Query: 81  IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
           ++   TLI  Y+    VK AR +F+K P+  R+ V +N M++           +E F+ M
Sbjct: 93  VLHTNTLINMYTKFGRVKPARYLFDKMPV--RNEVSWNTMMSGIVRVGLYLEGMEFFQKM 150

Query: 141 RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVS 200
               +KP +F   S+++A        ++ +Q+H  V KSG          L  VYV    
Sbjct: 151 CDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGL---------LSDVYVSTAI 201

Query: 201 SPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWN 260
                   L+  +R+VF+EMP+R+ +SWT++M GY          E +D      G    
Sbjct: 202 LHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKG---EPEEVIDIYKSMRGEG-- 256

Query: 261 ALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFR---LGKQVHAYLLRT--EAKP 315
                            ++ +E + + VIS+C   GL +   LG+Q+   ++++  E+K 
Sbjct: 257 -----------------VECNENSMSLVISSC---GLLKDESLGRQIIGQVIKSGLESKL 296

Query: 316 TPEFSLPVN-------------------------NALVTLYWKCGKVNEARDIFNQM--- 347
             E SL                            N++V  Y + G + E+  IFN M   
Sbjct: 297 AVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRF 356

Query: 348 ----------------PERDLVSW--------------------NAILSAYVSAGLIDEA 371
                            + D   W                    N +L  Y  AG  +EA
Sbjct: 357 HDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEA 416

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY-AFAGAITSCAG 430
             +F+ M  ++L+SW  +++    +G   + L +   M   G K  +Y  F  A+ +C  
Sbjct: 417 DLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTG-KSVNYVTFTSALAACFS 475

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
               + GR LH  +V SG   +   GNAL++MY + G +  +  V   MP  D V+WNA+
Sbjct: 476 PEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNAL 535

Query: 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
           I    ++ +  +A+  ++ +  EG+  + IT ++VLSAC   G + E  +         G
Sbjct: 536 IGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAG 595

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
               E      I +  + G  S ++D+ + L  + S   W A+LA    HG+
Sbjct: 596 FESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNR-SIITWNAILAANAHHGH 646



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 1/104 (0%)

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            GR LHA  V      S+   N LI MY + G V+ A  +F+ MP  + VSWN M++ + 
Sbjct: 76  TGRALHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIV 135

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG-LVKEG 538
           + G     +E +++M   GI P      ++++AC  +G + +EG
Sbjct: 136 RVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREG 179


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/508 (41%), Positives = 311/508 (61%), Gaps = 8/508 (1%)

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
           T +S + AC       LG+ +HAY  +            V  AL+ +Y + G  + AR +
Sbjct: 135 TLSSSLPACHG---LALGRALHAYAFKLALAGDSY----VATALLGMYARGGDADAARAL 187

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
           F++MP+  +V   A+L+ Y   G +D+A+ LF+ M  ++ + W  MI G  Q+G   E L
Sbjct: 188 FDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEAL 247

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG-YDSSLSAGNALITM 462
           +LF  M   G  P + A   A+++ A LG  E+GR LH+ + +S     +   G ALI M
Sbjct: 248 RLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDM 307

Query: 463 YARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF 522
           Y +CG +E A  VFN++ + D V WNAMI     HG+  +A+E++ Q+  +G+ P  ITF
Sbjct: 308 YCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITF 367

Query: 523 LTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582
           + +L+AC+H+GLV EG ++F++M   Y I P  +HY   +DLL RAG   EA  ++ S+ 
Sbjct: 368 IGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMT 427

Query: 583 FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAAR 642
             P   +W +LLA CR+H N+ LG Q A+ L      ++G Y+LLSN+YA +G W++ AR
Sbjct: 428 IAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVAR 487

Query: 643 VRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPD 702
           VR +M+  G++KEPGCS IEV  KV+ F+  D +HP    +Y  LE++   +++ G+VP 
Sbjct: 488 VRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQ 547

Query: 703 TKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSK 762
           T+ VLHD++   KE AL+ HSEKLAVAFGL+    G T++++KNLR C DCH   K +SK
Sbjct: 548 TELVLHDLDEVTKEKALAVHSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISK 607

Query: 763 VVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           + GR+IV RD  RFHHF DG C+CGDYW
Sbjct: 608 ITGRKIVFRDRNRFHHFVDGSCTCGDYW 635



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 132/507 (26%), Positives = 213/507 (42%), Gaps = 89/507 (17%)

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
           AY+ASD + L   +   TP     TVFY + I A+S      AA+ L  +M    + P +
Sbjct: 76  AYAASDRLDLTVTLLRLTPDPT--TVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTS 133

Query: 150 FTFTSVLSA---LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
            T +S L A   LAL          +H    K      + V  AL+ +Y +   +     
Sbjct: 134 HTLSSSLPACHGLAL-------GRALHAYAFKLALAGDSYVATALLGMYARGGDAD---- 182

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
                AAR +FDEMP+   +  T M+T Y K   LD ARE  DGM     + WNA+I GY
Sbjct: 183 -----AARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGY 237

Query: 267 VHR-------ELKMLMLR--IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                      L   MLR  +  DE      +SA A  G    G+ +H+Y+  +      
Sbjct: 238 TQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSR---RV 294

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
           + +  V  AL+ +Y KCG + +A  +FN + ++D+V WNA+++ Y               
Sbjct: 295 QLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGY--------------- 339

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
                           A +G   + L++FSQ+R +G  P D  F G + +C+  G ++ G
Sbjct: 340 ----------------AMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEG 383

Query: 438 RQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV-DSVSWNAMIAALG 495
            Q    +         +     ++ +  R G++E A  +  +M    D+V W +++AA  
Sbjct: 384 HQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACR 443

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLT---------------VLSACNHAGLVKE--- 537
            H N A   ++ + ++  G+    +  L                V S    +G+ KE   
Sbjct: 444 LHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGC 503

Query: 538 -----GRRYFETMHGPYGIPPGEDHYA 559
                GR+ +E + G    P  ++ YA
Sbjct: 504 SAIEVGRKVYEFVAGDMSHPRTDEIYA 530



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 142/333 (42%), Gaps = 41/333 (12%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           +L R++HA+          ++   L+ +Y +      AR LFDE+P P +V  T ++  Y
Sbjct: 147 ALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCY 206

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
           +    +  ARE+F+  P K  D + +NAMI  Y+ +   + A+ LFR M R  V PD   
Sbjct: 207 AKMGALDDARELFDGMPSK--DFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVA 264

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKS-GTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
               LSA+A +   E     +H  V  S    L   V  ALI +Y KC S         +
Sbjct: 265 IILALSAVAQLGTAESG-RWLHSYVKNSRRVQLNARVGTALIDMYCKCGS---------L 314

Query: 211 GAARRVFDEMPERDELSWTTMMTGY-VKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
             A  VF+ + ++D + W  M+ GY +  D   A   F    S+ +   W          
Sbjct: 315 EDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGL---WPT-------- 363

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
                       + T+  +++AC++SGL   G   H +    E +      +     +V 
Sbjct: 364 ------------DITFIGLLNACSHSGLVDEG---HQFFQSMEEEYAIVPKIEHYGCMVD 408

Query: 330 LYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
           L  + G + EA  +   M    D V W ++L+A
Sbjct: 409 LLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAA 441



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 97/239 (40%), Gaps = 21/239 (8%)

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
           AG +T CA    L    +LHA  V +G D   + G  L   YA    ++    +    P+
Sbjct: 39  AGLLTGCA---TLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPD 95

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY 541
             +V + + I A    G    A+ L  +ML  G++P   T  + L AC+   L +    Y
Sbjct: 96  PTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACHGLALGRALHAY 155

Query: 542 FETMHGPYGIPPGEDHY--ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI 599
                  + +    D Y     + +  R G    A+ + D +P     P+  A+L     
Sbjct: 156 ------AFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPV-TAMLTCYAK 208

Query: 600 HGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM---YANLGRWDDAARVRKLMRDRGVKKE 655
            G +D     A +LF  MP  +  ++  + M   Y   GR ++A R+ + M   GV  +
Sbjct: 209 MGALD----DARELFDGMP--SKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPD 261


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/508 (41%), Positives = 311/508 (61%), Gaps = 8/508 (1%)

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
           T +S + AC       LG+ +HAY  +            V  AL+ +Y + G  + AR +
Sbjct: 134 TLSSSLPACHG---LALGRALHAYAFKLALAGDSY----VATALLGMYARGGDADAARAL 186

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
           F++MP+  +V   A+L+ Y   G +D+A+ LF+ M  ++ + W  MI G  Q+G   E L
Sbjct: 187 FDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEAL 246

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG-YDSSLSAGNALITM 462
           +LF  M   G  P + A   A+++ A LG  E+GR LH+ + +S     +   G ALI M
Sbjct: 247 RLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDM 306

Query: 463 YARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF 522
           Y +CG +E A  VFN++ + D V WNAMI     HG+  +A+E++ Q+  +G+ P  ITF
Sbjct: 307 YCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITF 366

Query: 523 LTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582
           + +L+AC+H+GLV EG ++F++M   Y I P  +HY   +DLL RAG   EA  ++ S+ 
Sbjct: 367 IGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMT 426

Query: 583 FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAAR 642
             P   +W +LLA CR+H N+ LG Q A+ L      ++G Y+LLSN+YA +G W++ AR
Sbjct: 427 IAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVAR 486

Query: 643 VRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPD 702
           VR +M+  G++KEPGCS IEV  KV+ F+  D +HP    +Y  LE++   +++ G+VP 
Sbjct: 487 VRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQ 546

Query: 703 TKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSK 762
           T+ VLHD++   KE AL+ HSEKLAVAFGL+    G T++++KNLR C DCH   K +SK
Sbjct: 547 TELVLHDLDEVTKEKALAVHSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISK 606

Query: 763 VVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           + GR+IV RD  RFHHF DG C+CGDYW
Sbjct: 607 ITGRKIVFRDRNRFHHFVDGSCTCGDYW 634



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 132/507 (26%), Positives = 213/507 (42%), Gaps = 89/507 (17%)

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
           AY+ASD + L   +   TP     TVFY + I A+S      AA+ L  +M    + P +
Sbjct: 75  AYAASDRLDLTVTLLRLTPDPT--TVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTS 132

Query: 150 FTFTSVLSA---LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
            T +S L A   LAL          +H    K      + V  AL+ +Y +   +     
Sbjct: 133 HTLSSSLPACHGLAL-------GRALHAYAFKLALAGDSYVATALLGMYARGGDAD---- 181

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
                AAR +FDEMP+   +  T M+T Y K   LD ARE  DGM     + WNA+I GY
Sbjct: 182 -----AARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGY 236

Query: 267 VHR-------ELKMLMLR--IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                      L   MLR  +  DE      +SA A  G    G+ +H+Y+  +      
Sbjct: 237 TQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSR---RV 293

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
           + +  V  AL+ +Y KCG + +A  +FN + ++D+V WNA+++ Y               
Sbjct: 294 QLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGY--------------- 338

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
                           A +G   + L++FSQ+R +G  P D  F G + +C+  G ++ G
Sbjct: 339 ----------------AMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEG 382

Query: 438 RQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV-DSVSWNAMIAALG 495
            Q    +         +     ++ +  R G++E A  +  +M    D+V W +++AA  
Sbjct: 383 HQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACR 442

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLT---------------VLSACNHAGLVKE--- 537
            H N A   ++ + ++  G+    +  L                V S    +G+ KE   
Sbjct: 443 LHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGC 502

Query: 538 -----GRRYFETMHGPYGIPPGEDHYA 559
                GR+ +E + G    P  ++ YA
Sbjct: 503 SAIEVGRKVYEFVAGDMSHPRTDEIYA 529



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 142/333 (42%), Gaps = 41/333 (12%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           +L R++HA+          ++   L+ +Y +      AR LFDE+P P +V  T ++  Y
Sbjct: 146 ALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCY 205

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
           +    +  ARE+F+  P K  D + +NAMI  Y+ +   + A+ LFR M R  V PD   
Sbjct: 206 AKMGALDDARELFDGMPSK--DFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVA 263

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKS-GTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
               LSA+A +   E     +H  V  S    L   V  ALI +Y KC S         +
Sbjct: 264 IILALSAVAQLGTAESG-RWLHSYVKNSRRVQLNARVGTALIDMYCKCGS---------L 313

Query: 211 GAARRVFDEMPERDELSWTTMMTGY-VKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
             A  VF+ + ++D + W  M+ GY +  D   A   F    S+ +   W          
Sbjct: 314 EDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGL---WPT-------- 362

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
                       + T+  +++AC++SGL   G   H +    E +      +     +V 
Sbjct: 363 ------------DITFIGLLNACSHSGLVDEG---HQFFQSMEEEYAIVPKIEHYGCMVD 407

Query: 330 LYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
           L  + G + EA  +   M    D V W ++L+A
Sbjct: 408 LLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAA 440



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 97/239 (40%), Gaps = 21/239 (8%)

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
           AG +T CA    L    +LHA  V +G D   + G  L   YA    ++    +    P+
Sbjct: 38  AGLLTGCA---TLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPD 94

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY 541
             +V + + I A    G    A+ L  +ML  G++P   T  + L AC+   L +    Y
Sbjct: 95  PTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACHGLALGRALHAY 154

Query: 542 FETMHGPYGIPPGEDHY--ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI 599
                  + +    D Y     + +  R G    A+ + D +P     P+  A+L     
Sbjct: 155 ------AFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPV-TAMLTCYAK 207

Query: 600 HGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM---YANLGRWDDAARVRKLMRDRGVKKE 655
            G +D     A +LF  MP  +  ++  + M   Y   GR ++A R+ + M   GV  +
Sbjct: 208 MGALD----DARELFDGMP--SKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPD 260


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/620 (36%), Positives = 332/620 (53%), Gaps = 67/620 (10%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           Q+H  V  +G G  T +   L+++Y  C S         + +AR +FD +P+ +   W  
Sbjct: 96  QLHAQVCLAGFGFDTVIATKLVNLYCVCDS---------LSSARLLFDRIPKHNIFLWNV 146

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++ GY                      AWN      V    +M    +  D FT+  V+ 
Sbjct: 147 LIRGY----------------------AWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLK 184

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           ACA       G+++H ++++T                    W                E+
Sbjct: 185 ACAALSAIEHGREIHEHVVQTG-------------------W----------------EK 209

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           D+    A++  Y   G +  A+ +F+ +  R+ + W  M++  +QNG+ +  L L S+M 
Sbjct: 210 DVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMV 269

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
           L G +P +     AI++ A   AL  GR+LH       ++S      AL+ MYA+CG V 
Sbjct: 270 LTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVR 329

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
            A  +F  +     VSWNAMI     HG+   A++L+E+M +    PD ITF+ VLSAC+
Sbjct: 330 VARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSACS 388

Query: 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590
           H GL++EG  +FETM   Y I P   HY   +DLL  +G+  EA ++I  +   P + +W
Sbjct: 389 HGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVW 448

Query: 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650
            ALL  C+IH N++LG  A E+L +L P  AG YV+LSN+YA  G+W+  A++RKLM DR
Sbjct: 449 GALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDR 508

Query: 651 GVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDM 710
            +KK   CSWIEV NKVH FL  DT+HP +  +Y  LE++   M++ GY P T  V HD+
Sbjct: 509 RLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDV 568

Query: 711 ESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVV 770
           E D+K   + +HSE+LA+AFGL+  P G  + + KNLRIC DCH A KF+SK+  REI V
Sbjct: 569 EDDEKANMVCSHSERLAIAFGLISTPPGTRLLITKNLRICEDCHVAIKFISKITEREITV 628

Query: 771 RDGKRFHHFRDGKCSCGDYW 790
           RD  R+HHF+DG CSCGDYW
Sbjct: 629 RDVNRYHHFKDGVCSCGDYW 648



 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 155/332 (46%), Gaps = 43/332 (12%)

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           Y S++ +C      + GKQ+HA +          F   +   LV LY  C  ++ AR +F
Sbjct: 78  YASLLQSCIARKAIKPGKQLHAQVCLAGFG----FDTVIATKLVNLYCVCDSLSSARLLF 133

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           +++P+ ++  WN                               V+I G A NG  E  ++
Sbjct: 134 DRIPKHNIFLWN-------------------------------VLIRGYAWNGPYEAAVQ 162

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           L+ QM   G  P ++ F   + +CA L A+E+GR++H  +V +G++  +  G ALI MYA
Sbjct: 163 LYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYA 222

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           +CG V +A  VF+ +   D+V WN+M+AA  Q+G+    + L  +M+  G+ P   T +T
Sbjct: 223 KCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVT 282

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH---YARFIDLLCRAGKFSEAKDVIDSL 581
            +SA      + +GR     +HG       E H       +D+  + G    A+++ + L
Sbjct: 283 AISASADNAALPQGRE----LHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERL 338

Query: 582 PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
             K     W A++ G  +HG+    +   E++
Sbjct: 339 GVKRVVS-WNAMITGYAMHGHATEALDLFEEM 369



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/399 (27%), Positives = 176/399 (44%), Gaps = 74/399 (18%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF 73
           + YAS LQ C  R  I     + +HA +  +GF     I  +L+++YC            
Sbjct: 76  SNYASLLQSCIARKAIKP--GKQLHAQVCLAGFGFDTVIATKLVNLYC------------ 121

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
                                D++  AR +F++ P    +   +N +I  Y+ N    AA
Sbjct: 122 -------------------VCDSLSSARLLFDRIP--KHNIFLWNVLIRGYAWNGPYEAA 160

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
           ++L+  M    + PDNFTF  VL A A +   E    ++H  VV++G      V  ALI 
Sbjct: 161 VQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHG-REIHEHVVQTGWEKDVFVGAALID 219

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
           +Y KC           +G+AR VFD++  RD + W +M+  Y +N + DA          
Sbjct: 220 MYAKC---------GCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCS---- 266

Query: 254 NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
                             +M++  ++  E T  + ISA A++     G+++H    R E 
Sbjct: 267 ------------------EMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEF 308

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
           +   +    V  ALV +Y KCG V  AR++F ++  + +VSWNA+++ Y   G   EA  
Sbjct: 309 ESHDK----VKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALD 364

Query: 374 LFEAMR---ERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
           LFE M    + + +++  ++S  +  G  EEG   F  M
Sbjct: 365 LFEEMNRVAKPDHITFVGVLSACSHGGLLEEGWMFFETM 403



 Score = 79.3 bits (194), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 135/310 (43%), Gaps = 50/310 (16%)

Query: 61  CKSLKLV-YARTLFDEIPQP----DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTV 115
           C +L  + + R + + + Q     D+     LI  Y+    V  ARE+F+K  + +RD V
Sbjct: 186 CAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDK--ILVRDAV 243

Query: 116 FYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
            +N+M+ AYS N +  A + L  +M    ++P   T  + +SA A       Q  ++H  
Sbjct: 244 LWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASA-DNAALPQGRELHGL 302

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
             +        V  AL+ +Y KC S         +  AR +F+ +  +  +SW  M+TGY
Sbjct: 303 SWRQEFESHDKVKTALVDMYAKCGS---------VRVARNLFERLGVKRVVSWNAMITGY 353

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
             + +   A E LD   E   VA                    + D  T+  V+SAC++ 
Sbjct: 354 AMHGH---ATEALDLFEEMNRVA--------------------KPDHITFVGVLSACSHG 390

Query: 296 GLFRLGKQVHAYLLRT-EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM---PERD 351
           GL   G      ++R  +  PT +        +V L    G+++EA ++  QM   P+  
Sbjct: 391 GLLEEGWMFFETMIRDYKIDPTVQHY----TCMVDLLGHSGRLDEAYNLIMQMKVLPDSG 446

Query: 352 LVSWNAILSA 361
           +  W A+L++
Sbjct: 447 V--WGALLNS 454


>gi|297794613|ref|XP_002865191.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311026|gb|EFH41450.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 249/772 (32%), Positives = 393/772 (50%), Gaps = 112/772 (14%)

Query: 34  ARSVHAHMISSGFKPRE-----HIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLI 88
            +S  ++ ++  F+ RE     H++NR +D          AR +FD++P P +   T +I
Sbjct: 23  GKSFRSYSVTVEFQNREVLICNHLLNRRLD---------EAREVFDQVPSPHVSLYTKMI 73

Query: 89  AAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPD 148
           + Y+ S+ +  A  +F++ PL  RD V +N+MI+      +   A+++F +M      P+
Sbjct: 74  SGYTRSNRLVDALNLFDEMPL--RDVVSWNSMISGCVECGDIDTAVKMFDEM------PE 125

Query: 149 NFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
                SV+S  A++      C +                                     
Sbjct: 126 R----SVVSWTAMV----NGCFRF-----------------------------------G 142

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
           ++  A R+F +MP +D  +W  M+ GY++   +D A +    M     ++W  +I G   
Sbjct: 143 MVDQAERLFCQMPVKDIAAWNAMVHGYLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQ 202

Query: 269 REL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
            E           ML   I+    T+T VI+ACAN+  F +G QVH +++    K    +
Sbjct: 203 NERSGEALNLFKNMLRCCIKSTSRTFTCVITACANAPAFHMGTQVHGFII----KSGFLY 258

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
              V  +L+TLY  C +  ++R +F +M    +                           
Sbjct: 259 EEYVTASLITLYANCKRTEDSRKVFGEMVHEKVAV------------------------- 293

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
                 WT ++SG + N   E+ L +FS+M      P    FA  + SC+ LG L+ G++
Sbjct: 294 ------WTALLSGYSLNRKHEDALNVFSEMIRNSILPNQSTFASGLNSCSALGTLDWGKE 347

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           +H   V  G  +    GN+L+ MY+  G V  A  VF  +     VSWN++I    QHG 
Sbjct: 348 IHGVAVKLGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEIFKKSIVSWNSIIVGCAQHGR 407

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH-GPYGIPPGEDHY 558
           G  A  ++ QM++    PD ITF  +LSAC+H G +++GR+ F  +  G   I     HY
Sbjct: 408 GKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLQKGRKLFYYISSGLNHIDRKIQHY 467

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
              +D+L R G+  EA+ +I+S+  KP+  +W ALL+ CR+H ++D G +AA  +F L  
Sbjct: 468 TCMVDILGRCGELKEAEKLIESMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDS 527

Query: 619 HHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHP 678
             +  YVLLSN+YA+ GRW   +++R  M+ +G+ K+PG SW+ +  K H F   D   P
Sbjct: 528 KSSAAYVLLSNIYASAGRWSSVSKLRVKMKQKGIMKKPGSSWVVIRGKKHEFFSGD--RP 585

Query: 679 EAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGG 738
               +++ LE L  ++++LGYVPD +  LHD+E +QKE  L  HSE+LA+AFGL+    G
Sbjct: 586 HCLRIFEKLEFLREKLKELGYVPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEG 645

Query: 739 ATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +TV V+KNLR+C DCH   K +S+VVG +IV+RD  RFHHF++G CSCGDYW
Sbjct: 646 STVTVMKNLRVCEDCHTVIKLISRVVGCKIVLRDPTRFHHFKNGMCSCGDYW 697



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/330 (21%), Positives = 138/330 (41%), Gaps = 68/330 (20%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           +   VH  +I SGF   E++   LI +Y    +   +R +F E+    +   T       
Sbjct: 243 MGTQVHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRKVFGEMVHEKVAVWT------- 295

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                     A+++ YS N     A+ +F +M R+ + P+  TF
Sbjct: 296 --------------------------ALLSGYSLNRKHEDALNVFSEMIRNSILPNQSTF 329

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            S L++ + +   +    ++H   VK G G    V N+L+ +Y         S    +  
Sbjct: 330 ASGLNSCSALGTLDWG-KEIHGVAVKLGLGTVAFVGNSLVVMY---------SDSGNVND 379

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A  VF E+ ++  +SW +++ G  ++           G  +     W  +I G      +
Sbjct: 380 AVSVFIEIFKKSIVSWNSIIVGCAQH-----------GRGK-----WAFVIFG------Q 417

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           M+ L  + DE T+T ++SAC++ G  + G+++  Y+  +      +  +     +V +  
Sbjct: 418 MIRLNKEPDEITFTGLLSACSHCGFLQKGRKLFYYI--SSGLNHIDRKIQHYTCMVDILG 475

Query: 333 KCGKVNEARDIFNQMPER-DLVSWNAILSA 361
           +CG++ EA  +   M  + + + W A+LSA
Sbjct: 476 RCGELKEAEKLIESMVVKPNEMVWLALLSA 505


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/608 (37%), Positives = 331/608 (54%), Gaps = 42/608 (6%)

Query: 185 TSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAA 244
           T+  N L++ Y K       S    +  ARR+FD +P  D +S+ T+++ +     +D A
Sbjct: 38  TTTYNCLLAGYAK------ASGPGRLADARRLFDSIPHPDAVSYNTLLSCHFACGDIDGA 91

Query: 245 REFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304
                 M      +WN ++SG        L     ++E              +FR     
Sbjct: 92  WRVFSTMPVRDVTSWNTMVSG--------LSKNGAIEE-----------AEAMFR----- 127

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSAYV 363
                       P  +    NA+V      G +  A ++F   PE+ D + W A++S Y+
Sbjct: 128 ----------AMPARNAVSWNAMVAARASSGDMGAAENLFRNAPEKTDAILWTAMVSGYM 177

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF-KPCDYAFA 422
             G + +A   F AM  RNL+SW  +++G  +N    + L++F  M  +   +P     +
Sbjct: 178 DTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLS 237

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
             +  C+ L AL  GRQ+H   +      S++ G +L++MY +CG ++ A  +F+ M   
Sbjct: 238 SVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTK 297

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
           D V+WNAMI+   QHG G +AI+L+E+M  EG++PD IT L VL+AC H GL   G + F
Sbjct: 298 DIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCF 357

Query: 543 ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
           ETM   Y I P  DHY+  +DLLCRAG    A ++I S+PF+P    +  LL  CR++ N
Sbjct: 358 ETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKN 417

Query: 603 IDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIE 662
           ++    AA +L +  P +AG YV L+N+YA   RWDD +RVR+ M+D  V K PG SW+E
Sbjct: 418 LEFAEFAARKLIEQDPQNAGAYVQLANIYAVANRWDDVSRVRRWMKDNAVVKTPGYSWME 477

Query: 663 VDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTH 722
           +    H F  +D  HP+   ++  L++L   M+ +GY PD  F LHD+E   K   L  H
Sbjct: 478 IKGVRHEFRSNDRLHPQLDLIHDKLDRLGKLMKAMGYSPDLDFALHDVEESLKSQMLMRH 537

Query: 723 SEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDG 782
           SEKLA+AFGL+    G T+R+ KNLRICGDCHNA K +SK+  REI++RD  RFHHFR G
Sbjct: 538 SEKLAIAFGLISTSPGMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGG 597

Query: 783 KCSCGDYW 790
            CSCGDYW
Sbjct: 598 HCSCGDYW 605



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 164/362 (45%), Gaps = 72/362 (19%)

Query: 65  KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
           +L  AR LFD IP PD V+  TL++ + A  ++  A  +F+  P+  RD   +N M++  
Sbjct: 56  RLADARRLFDSIPHPDAVSYNTLLSCHFACGDIDGAWRVFSTMPV--RDVTSWNTMVSGL 113

Query: 125 SHNSNGHAAIELFRDM-RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGL 183
           S N     A  +FR M  R+ V                                      
Sbjct: 114 SKNGAIEEAEAMFRAMPARNAVS------------------------------------- 136

Query: 184 FTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER-DELSWTTMMTGYVKNDYLD 242
                NA+++           +S   MGAA  +F   PE+ D + WT M++GY+    + 
Sbjct: 137 ----WNAMVAAR---------ASSGDMGAAENLFRNAPEKTDAILWTAMVSGYMDTGNVQ 183

Query: 243 AAREFLDGMSENVGVAWNALISGYVHRELKMLMLR----------IQLDEFTYTSVISAC 292
            A E+   M     V+WNA+++GYV        LR          +Q +  T +SV+  C
Sbjct: 184 KAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGC 243

Query: 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL 352
           +N      G+QVH + ++         S+ V  +L+++Y KCG +++A  +F++M  +D+
Sbjct: 244 SNLSALGFGRQVHQWCMKLPLGR----SITVGTSLLSMYCKCGDLDDACKLFDEMHTKDI 299

Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNLL-SWTVMISGLA---QNGYGEEGLKLFSQ 408
           V+WNA++S Y   G   +A  LFE M++  ++  W  +++ L      G  + G++ F  
Sbjct: 300 VAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFET 359

Query: 409 MR 410
           M+
Sbjct: 360 MQ 361



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 130/303 (42%), Gaps = 51/303 (16%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQP-DIVARTTLIAAYSASDNVKLAREMFNKTPLKMR 112
           N ++     S  +  A  LF   P+  D +  T +++ Y  + NV+ A E F   P+  R
Sbjct: 138 NAMVAARASSGDMGAAENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPV--R 195

Query: 113 DTVFYNAMITAYSHNSNGHAAIELFRDMRRDD-VKPDNFTFTSVL------SALALIVEE 165
           + V +NA++  Y  NS    A+ +F+ M  D  V+P+  T +SVL      SAL    + 
Sbjct: 196 NLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQV 255

Query: 166 EKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDE 225
            + CM++         G   +V  +L+S+Y KC           +  A ++FDEM  +D 
Sbjct: 256 HQWCMKL-------PLGRSITVGTSLLSMYCKCGD---------LDDACKLFDEMHTKDI 299

Query: 226 LSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTY 285
           ++W  M++GY ++     A +  + M +   V                       D  T 
Sbjct: 300 VAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVP----------------------DWITL 337

Query: 286 TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFN 345
            +V++AC ++GL   G Q    +   +     E  +   + +V L  + G +  A ++ +
Sbjct: 338 LAVLTACIHTGLCDFGIQCFETM---QEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIH 394

Query: 346 QMP 348
            MP
Sbjct: 395 SMP 397


>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
 gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/603 (37%), Positives = 345/603 (57%), Gaps = 69/603 (11%)

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK-NDYLDAAREF 247
           N ++ ++VKC          +M  ARR+FDEMPER+ +SW T+++G V   D+++A R F
Sbjct: 14  NRVLLMHVKC---------GMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEAFRLF 64

Query: 248 LDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY 307
           L+ M E    A                        FT+  +I A A   L  +G+Q+HA 
Sbjct: 65  LN-MWEEFSDA----------------------GSFTFAVMIRASAGLELISIGRQLHAC 101

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367
            L+          + V+ AL+ +Y KCG + +AR +F +MPE+  V WN I++ Y     
Sbjct: 102 TLKMGIGD----DIFVSCALIDMYSKCGSIEDARFVFEEMPEKTTVGWNTIIAGY----- 152

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
                                     A +GY EE L ++ +MR  G K   + F+  +  
Sbjct: 153 --------------------------ALHGYSEEALDMYYEMRDSGVKMDHFTFSMIVRI 186

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
           CA L ++E+ +Q HA L+  G+ S + A  AL+  Y++ G +E A  VF+ M + + +SW
Sbjct: 187 CARLASVEHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKMASKNVISW 246

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
           NA+I   G HG G+ A+EL+EQM++E + P+ ITFL VLSAC+H+GL + G   F++M  
Sbjct: 247 NALIGGYGNHGRGSEAVELFEQMIQERMNPNHITFLAVLSACSHSGLSERGWEIFQSMGR 306

Query: 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
              I P   HYA  I+L+ R G   EA  +I   PFKP+A +W ALL  CR++ N +LG 
Sbjct: 307 DNRIKPRAMHYACMIELMGREGLLDEALALIRGAPFKPTANMWAALLTACRVNENFELGK 366

Query: 608 QAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKV 667
            AAE+L+ + P     Y++L N+Y + G   +AA V   ++ +G++  P CSWIEV  + 
Sbjct: 367 FAAEKLYGMEPDKLNNYIVLLNIYNSAGNLKEAADVVHTLKRKGLRMRPVCSWIEVKRRP 426

Query: 668 HVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLA 727
           HVFL  D  HP+ + +Y+ +++L+LE+ K GYVP+ K +L D++ +Q+E     HSEKLA
Sbjct: 427 HVFLSGDNRHPQRKEIYQKVDKLMLEISKYGYVPNQKTLLPDVD-EQEERVRLYHSEKLA 485

Query: 728 VAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCG 787
           +AFGL+  P  A +++++  RICGDCH A K +++V GREIV+RD  RFHHF+ G CSC 
Sbjct: 486 IAFGLISTPYWAPLQIVQGHRICGDCHEAIKLIARVTGREIVIRDAGRFHHFKHGHCSCE 545

Query: 788 DYW 790
           DYW
Sbjct: 546 DYW 548



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 180/405 (44%), Gaps = 74/405 (18%)

Query: 41  MISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLA 100
           MI +GF+  +++ NR++ ++ K   ++ AR LFDE+P+                      
Sbjct: 1   MIDNGFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPE---------------------- 38

Query: 101 REMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA 160
                      R+ V +N +I+      +   A  LF +M  +     +FTF  ++ A A
Sbjct: 39  -----------RNLVSWNTIISGLVDVGDFMEAFRLFLNMWEEFSDAGSFTFAVMIRASA 87

Query: 161 LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEM 220
            + E      Q+H   +K G G    V  ALI +Y KC S         +  AR VF+EM
Sbjct: 88  GL-ELISIGRQLHACTLKMGIGDDIFVSCALIDMYSKCGS---------IEDARFVFEEM 137

Query: 221 PERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQL 280
           PE+  + W T++ GY  + Y + A +    M +          SG            +++
Sbjct: 138 PEKTTVGWNTIIAGYALHGYSEEALDMYYEMRD----------SG------------VKM 175

Query: 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
           D FT++ ++  CA        KQ HA L+R          +  N ALV  Y K G++ +A
Sbjct: 176 DHFTFSMIVRICARLASVEHAKQAHAALIRHGFGS----DIVANTALVDFYSKWGRIEDA 231

Query: 341 RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM-RER---NLLSWTVMISGLAQN 396
           R +F++M  ++++SWNA++  Y + G   EA  LFE M +ER   N +++  ++S  + +
Sbjct: 232 RHVFDKMASKNVISWNALIGGYGNHGRGSEAVELFEQMIQERMNPNHITFLAVLSACSHS 291

Query: 397 GYGEEGLKLFSQM-RLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
           G  E G ++F  M R    KP    +A  I      G L+    L
Sbjct: 292 GLSERGWEIFQSMGRDNRIKPRAMHYACMIELMGREGLLDEALAL 336



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 134/332 (40%), Gaps = 71/332 (21%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           S+ R +HA  +  G      +   LID+Y K   +  AR +F+E+P+   V   T+IA Y
Sbjct: 93  SIGRQLHACTLKMGIGDDIFVSCALIDMYSKCGSIEDARFVFEEMPEKTTVGWNTIIAGY 152

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
           +                            +  YS       A++++ +MR   VK D+FT
Sbjct: 153 A----------------------------LHGYSEE-----ALDMYYEMRDSGVKMDHFT 179

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           F+ ++   A +   E    Q H  +++ G G       AL+  Y         S    + 
Sbjct: 180 FSMIVRICARLASVE-HAKQAHAALIRHGFGSDIVANTALVDFY---------SKWGRIE 229

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            AR VFD+M  ++ +SW  ++ GY  +     A E  +                      
Sbjct: 230 DARHVFDKMASKNVISWNALIGGYGNHGRGSEAVELFE---------------------- 267

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR-TEAKPTPEFSLPVNNALVTL 330
           +M+  R+  +  T+ +V+SAC++SGL   G ++   + R    KP           ++ L
Sbjct: 268 QMIQERMNPNHITFLAVLSACSHSGLSERGWEIFQSMGRDNRIKPRAMHYA----CMIEL 323

Query: 331 YWKCGKVNEARDIFNQMPERDLVS-WNAILSA 361
             + G ++EA  +    P +   + W A+L+A
Sbjct: 324 MGREGLLDEALALIRGAPFKPTANMWAALLTA 355



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 8/161 (4%)

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
           ++ +G++      N ++ M+ +CG++  A  +F+ MP  + VSWN +I+ L   G+   A
Sbjct: 1   MIDNGFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEA 60

Query: 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG-PYGIPPGEDHYAR-- 560
             L+  M +E       TF  ++ A     L+  GR+    +H     +  G+D +    
Sbjct: 61  FRLFLNMWEEFSDAGSFTFAVMIRASAGLELISIGRQ----LHACTLKMGIGDDIFVSCA 116

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
            ID+  + G   +A+ V + +P K +   W  ++AG  +HG
Sbjct: 117 LIDMYSKCGSIEDARFVFEEMPEKTTVG-WNTIIAGYALHG 156


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/509 (42%), Positives = 305/509 (59%), Gaps = 37/509 (7%)

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
           +++ ++ +CA SG  +LG+  H  ++    K   E+ + +   L+  Y K G V EAR++
Sbjct: 32  SFSLILRSCAISGEAQLGEAFHCQIM----KMGFEYDMILQTGLLDFYAKHGYVEEARNL 87

Query: 344 FNQMPER--DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEE 401
           F+ M ER  + V+WN ++SAYV  G    A S+F+                         
Sbjct: 88  FDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQ------------------------- 122

Query: 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALIT 461
                 QM+ E  KP +      +++CA LGAL+ G  +H  +        +  GNALI 
Sbjct: 123 ------QMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALID 176

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           MY +CG +EAA  VF+ +   +   WN++I  LG +G G  AI  +  M KEGI PD +T
Sbjct: 177 MYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVT 236

Query: 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581
           F+ +LS C+H+GL+  G+RYF  M G YG+ PG +HY   +DLL RAG   EA ++I ++
Sbjct: 237 FVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAM 296

Query: 582 PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAA 641
           P KP++ +  +LL  C+IH +  LG Q  +QL +L P   G YV LSN+YA+L RWDD  
Sbjct: 297 PMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVN 356

Query: 642 RVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVP 701
             RKLM  RGV K PGCS IEV+N VH F+  DT+HP+   +  +L+++  E++  G+VP
Sbjct: 357 TCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHVP 416

Query: 702 DTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMS 761
           +T  VLHD+E ++KE A+  HSE++AVAFGLM  P G T+RV+KNLR C DCH+A K +S
Sbjct: 417 NTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLIS 476

Query: 762 KVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
               REI+VRD KRFHHFR+G CSC DYW
Sbjct: 477 NAFKREIIVRDRKRFHHFRNGSCSCNDYW 505



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 158/390 (40%), Gaps = 89/390 (22%)

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
            +  M R+DV P   +F+ +L + A I  E +     HC ++K G               
Sbjct: 17  FYSGMLRNDVLPSKTSFSLILRSCA-ISGEAQLGEAFHCQIMKMGF-------------- 61

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE-- 253
                                     E D +  T ++  Y K+ Y++ AR   D M+E  
Sbjct: 62  --------------------------EYDMILQTGLLDFYAKHGYVEEARNLFDNMTERN 95

Query: 254 NVGVAWNALISGYVH---------RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304
           +  V WN +IS YV             +M    ++  E T  S++SACA+ G   +G+ +
Sbjct: 96  SNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWI 155

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVS 364
           H Y+     K      + + NAL+ +Y KCG +  A D+F+ +  +++  WN+I      
Sbjct: 156 HGYIRTKRLK----IDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSI------ 205

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
                                    I GL  NG GEE +  F  M  EG KP    F G 
Sbjct: 206 -------------------------IVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGI 240

Query: 425 ITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NV 482
           ++ C+  G L  G++  ++++   G +  +     ++ +  R G ++ A  +   MP   
Sbjct: 241 LSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKP 300

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           +S+   +++ A   H +     ++ +Q+L+
Sbjct: 301 NSMVLGSLLRACQIHKDTKLGEQVTQQLLE 330



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 105/226 (46%), Gaps = 10/226 (4%)

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG 448
           MI    ++G   + L  +S M      P   +F+  + SCA  G  + G   H Q++  G
Sbjct: 1   MIRVSLESGVCPDFLGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMG 60

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMP--NVDSVSWNAMIAALGQHGNGARAIEL 506
           ++  +     L+  YA+ G VE A  +F+ M   N +SV+WN MI+A  Q G    AI +
Sbjct: 61  FEYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISM 120

Query: 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGR---RYFETMHGPYGIPPGEDHYARFID 563
           ++QM  E + P  +T +++LSAC H G +  G     Y  T      +  G       ID
Sbjct: 121 FQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGN----ALID 176

Query: 564 LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609
           + C+ G    A DV   L  K +   W +++ G  ++G  +  I A
Sbjct: 177 MYCKCGALEAAIDVFHGLSRK-NIFCWNSIIVGLGMNGRGEEAIAA 221



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 119/272 (43%), Gaps = 37/272 (13%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D++ +T L+  Y+    V+ AR +F+    +  ++V +N MI+AY        AI +F+ 
Sbjct: 64  DMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQ 123

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M+ ++VKP   T  S+LSA A +   +     +H  +      +   + NALI +Y KC 
Sbjct: 124 MQSENVKPTEVTMVSLLSACAHLGALDMG-EWIHGYIRTKRLKIDVVLGNALIDMYCKC- 181

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                     + AA  VF  +  ++   W +++ G   N   + A               
Sbjct: 182 --------GALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEA--------------- 218

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPE 318
              I+ ++  E +     I+ D  T+  ++S C++SGL   G++  + +L     +P  E
Sbjct: 219 ---IAAFIVMEKE----GIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVE 271

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
                   +V L  + G + EA ++   MP +
Sbjct: 272 HY----GCMVDLLGRAGYLKEALELIRAMPMK 299


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/571 (39%), Positives = 323/571 (56%), Gaps = 49/571 (8%)

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY----VHR---ELKMLMLR--IQ 279
             ++  YVK + L+ A +  D M +   ++W  +IS Y    +H+   EL +LMLR  ++
Sbjct: 100 NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVR 159

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            + +TY+SV+ +C      R+   +H                            CG + E
Sbjct: 160 PNVYTYSSVLRSCNGMSDVRM---LH----------------------------CGIIKE 188

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
                    E D+   +A++  +   G  ++A S+F+ M   + + W  +I G AQN   
Sbjct: 189 G-------LESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRS 241

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
           +  L+LF +M+  GF          + +C GL  LE G Q H  +V   YD  L   NAL
Sbjct: 242 DVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNAL 299

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           + MY +CG +E A  VFN M   D ++W+ MI+ L Q+G    A++L+E+M   G  P+ 
Sbjct: 300 VDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNY 359

Query: 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579
           IT + VL AC+HAGL+++G  YF +M   YGI P  +HY   IDLL +AGK  +A  +++
Sbjct: 360 ITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLN 419

Query: 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639
            +  +P A  W  LL  CR+  N+ L   AA+++  L P  AGTY LLSN+YAN  +WD 
Sbjct: 420 EMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDS 479

Query: 640 AARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGY 699
              +R  MRDRG+KKEPGCSWIEV+ ++H F++ D +HP+   V K L QL+  +  +GY
Sbjct: 480 VEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGY 539

Query: 700 VPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKF 759
           VP+T FVL D+E +Q E +L  HSEKLA+AFGLM LP    +R+ KNLRICGDCH   K 
Sbjct: 540 VPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKL 599

Query: 760 MSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            SK+  R IV+R   R+HHF+DGKCSCGDYW
Sbjct: 600 ASKLEIRSIVIRGPIRYHHFQDGKCSCGDYW 630



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 122/467 (26%), Positives = 201/467 (43%), Gaps = 113/467 (24%)

Query: 35  RSVHA------HMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLI 88
           R+VH       H+  +G +P   ++N LI++Y K   L  A  LFD++PQ ++++ TT+I
Sbjct: 75  RAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMI 134

Query: 89  AAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPD 148
           +AYS             K  +  +                    A+EL   M RD+V+P+
Sbjct: 135 SAYS-------------KCKIHQK--------------------ALELLVLMLRDNVRPN 161

Query: 149 NFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
            +T++SVL +   + +       +HC ++K G      V +ALI V+ K +  P      
Sbjct: 162 VYTYSSVLRSCNGMSDVR----MLHCGIIKEGLESDVFVRSALIDVFAK-LGEP------ 210

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
               A  VFDEM   D + W +++ G+ +N   D A E    M            +G++ 
Sbjct: 211 --EDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKR----------AGFI- 257

Query: 269 RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALV 328
                       ++ T TSV+ AC    L  LG Q H ++++ +        L +NNALV
Sbjct: 258 -----------AEQATLTSVLRACTGLALLELGMQAHVHIVKYDQ------DLILNNALV 300

Query: 329 TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV 388
            +Y KCG + +A  +FNQM ERD+++W+ ++S     G   EA                 
Sbjct: 301 DMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEA----------------- 343

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH-S 447
                         LKLF +M+  G KP      G + +C+  G LE+G      +    
Sbjct: 344 --------------LKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLY 389

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAA 493
           G D        +I +  + G ++ A  + N M    D+V+W  ++ A
Sbjct: 390 GIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGA 436



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 152/364 (41%), Gaps = 92/364 (25%)

Query: 7   DYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKL 66
           D +R     Y+S L+ C+  + +     R +H  +I  G +    + + LID++ K  + 
Sbjct: 156 DNVRPNVYTYSSVLRSCNGMSDV-----RMLHCGIIKEGLESDVFVRSALIDVFAKLGEP 210

Query: 67  VYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSH 126
             A ++FDE+   D +   ++I                                   ++ 
Sbjct: 211 EDALSVFDEMVTGDAIVWNSIIG---------------------------------GFAQ 237

Query: 127 NSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA---LALIVEEEKQCMQMHCTVVKSGTGL 183
           NS    A+ELF+ M+R     +  T TSVL A   LAL+    +  MQ H  +VK    L
Sbjct: 238 NSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALL----ELGMQAHVHIVKYDQDL 293

Query: 184 FTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDA 243
             +  NAL+ +Y KC S         +  A RVF++M ERD ++W+TM++G  +N Y   
Sbjct: 294 ILN--NALVDMYCKCGS---------LEDALRVFNQMKERDVITWSTMISGLAQNGYSQE 342

Query: 244 AREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ 303
           A +  + M  + G   N +                     T   V+ AC+++GL   G  
Sbjct: 343 ALKLFERMKSS-GTKPNYI---------------------TIVGVLFACSHAGLLEDG-- 378

Query: 304 VHAYLLRTEAK-----PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNA 357
              Y  R+  K     P  E        ++ L  K GK+++A  + N+M  E D V+W  
Sbjct: 379 --WYYFRSMKKLYGIDPVREHY----GCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRT 432

Query: 358 ILSA 361
           +L A
Sbjct: 433 LLGA 436



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 127/313 (40%), Gaps = 62/313 (19%)

Query: 387 TVMISGLAQNGYGEE---GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
           T+++S   +  Y  +    +K    ++  G       ++  I  C    A+  G  +   
Sbjct: 27  TLLLSEFTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRH 86

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
           L  +G+   +   N LI MY +  ++  A+ +F+ MP  + +SW  MI+A  +     +A
Sbjct: 87  LYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKA 146

Query: 504 IELYEQMLKEGILPDRITFLTVLSACN--------HAGLVKEGRRYFETMHGPYGIPPGE 555
           +EL   ML++ + P+  T+ +VL +CN        H G++KEG                 
Sbjct: 147 LELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLE--------------S 192

Query: 556 DHYAR--FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ----- 608
           D + R   ID+  + G+  +A  V D +     A +W +++ G   +   D+ ++     
Sbjct: 193 DVFVRSALIDVFAKLGEPEDALSVFDEM-VTGDAIVWNSIIGGFAQNSRSDVALELFKRM 251

Query: 609 -----AAEQ--LFQLMPHHAGTYVL----------------------LSNMYANLGRWDD 639
                 AEQ  L  ++    G  +L                      L +MY   G  +D
Sbjct: 252 KRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLED 311

Query: 640 AARVRKLMRDRGV 652
           A RV   M++R V
Sbjct: 312 ALRVFNQMKERDV 324


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/548 (40%), Positives = 323/548 (58%), Gaps = 24/548 (4%)

Query: 259 WNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
           W  +I+ + H +L         +ML   IQ + FT +S++ AC         + VH++ +
Sbjct: 89  WTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACT----LHPARAVHSHAI 144

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLID 369
           +          L V+  LV  Y + G V  A+ +F+ MPER LVS+ A+L+ Y   G++ 
Sbjct: 145 KFGLSS----HLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLP 200

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG-------FKPCDYAFA 422
           EA+ LFE M  ++++ W VMI G AQ+G   E L  F +M +          +P +    
Sbjct: 201 EARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVV 260

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
             ++SC  +GALE G+ +H+ + ++G   ++  G AL+ MY +CG +E A  VF+ M   
Sbjct: 261 AVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGK 320

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
           D V+WN+MI   G HG    A++L+ +M   G+ P  ITF+ VL+AC HAGLV +G   F
Sbjct: 321 DVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVF 380

Query: 543 ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
           ++M   YG+ P  +HY   ++LL RAG+  EA D++ S+  +P   +W  LL  CRIH N
Sbjct: 381 DSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSN 440

Query: 603 IDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIE 662
           + LG + AE L       +GTYVLLSNMYA    W   A+VR +M+  GV+KEPGCS IE
Sbjct: 441 VSLGEEIAEILVSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIE 500

Query: 663 VDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTH 722
           V N+VH F+  D  HP ++ +Y  LE++   +++  Y P T  VLHD+   +KE +L  H
Sbjct: 501 VKNRVHEFVAGDRRHPRSKDIYSMLEKMNGWLKERHYTPKTDAVLHDIGEQEKEQSLEVH 560

Query: 723 SEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDG 782
           SEKLA+AFGL+    GA ++++KNLR+C DCH   K MSK+ GR+I++RD  RFHHF +G
Sbjct: 561 SEKLALAFGLISTSPGAAIKIVKNLRVCLDCHAVMKIMSKISGRKIIMRDRNRFHHFENG 620

Query: 783 KCSCGDYW 790
            CSC DYW
Sbjct: 621 SCSCRDYW 628



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 108/444 (24%), Positives = 190/444 (42%), Gaps = 69/444 (15%)

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
           +Y++  ++  +  +F++TP    +   +  +I A++H    H A+  +  M    ++P+ 
Sbjct: 64  SYASLGHLHHSVTLFHRTPNP--NVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNA 121

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           FT +S+L A  L          +H   +K G      V   L+  Y +            
Sbjct: 122 FTLSSLLKACTL-----HPARAVHSHAIKFGLSSHLYVSTGLVDAYAR---------GGD 167

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           + +A+++FD MPER  +S+T M+T Y K+  L  AR   +GM     V WN +I GY   
Sbjct: 168 VASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQH 227

Query: 270 ----------------ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
                                  +++ +E T  +V+S+C   G    GK VH+Y+     
Sbjct: 228 GCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGI 287

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
           K     ++ V  ALV +Y KCG + +AR +F+ M  +D+V+WN+++  Y   G  DEA  
Sbjct: 288 K----VNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEA-- 341

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
                                        L+LF +M   G KP D  F   +T+CA  G 
Sbjct: 342 -----------------------------LQLFHEMCCIGVKPSDITFVAVLTACAHAGL 372

Query: 434 LENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMI 491
           +  G ++   +    G +  +     ++ +  R G ++ A  +  +M    D V W  ++
Sbjct: 373 VSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLL 432

Query: 492 AALGQHGNGARAIELYEQMLKEGI 515
            A   H N +   E+ E ++  G+
Sbjct: 433 WACRIHSNVSLGEEIAEILVSNGL 456



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 152/338 (44%), Gaps = 49/338 (14%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           AR+VH+H I  G     ++   L+D Y +   +  A+ LFD +P+  +V+ T ++  Y+ 
Sbjct: 136 ARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAK 195

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD-------MRRDDVK 146
              +  AR +F    + M+D V +N MI  Y+ +   + A+  FR             V+
Sbjct: 196 HGMLPEARVLFEG--MGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVR 253

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQ-MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVS 205
           P+  T  +VLS+   +   E  C + +H  V  +G  +   V  AL+ +Y KC S     
Sbjct: 254 PNEITVVAVLSSCGQVGALE--CGKWVHSYVENNGIKVNVRVGTALVDMYCKCGS----- 306

Query: 206 SRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265
               +  AR+VFD M  +D ++W +M+ GY  + + D A +                   
Sbjct: 307 ----LEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFH---------------- 346

Query: 266 YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVN 324
                 +M  + ++  + T+ +V++ACA++GL   G +V   +      +P  E      
Sbjct: 347 ------EMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHY---- 396

Query: 325 NALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
             +V L  + G++ EA D+   M  E D V W  +L A
Sbjct: 397 GCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWA 434



 Score = 43.5 bits (101), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 5/144 (3%)

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           Q+HA L+  G          L   YA  G +  +  +F+  PN +   W  +I A     
Sbjct: 41  QIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFD 100

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
               A+  Y QML   I P+  T  ++L AC          R   +    +G+       
Sbjct: 101 LFHHALSYYSQMLTHPIQPNAFTLSSLLKACT-----LHPARAVHSHAIKFGLSSHLYVS 155

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLP 582
              +D   R G  + A+ + D++P
Sbjct: 156 TGLVDAYARGGDVASAQKLFDAMP 179


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 241/650 (37%), Positives = 370/650 (56%), Gaps = 41/650 (6%)

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVS 205
           KP +    S L +L    +  +Q  Q H  ++ +          ALIS  V       ++
Sbjct: 9   KPFHSDHYSRLVSLIDSCKSMQQIKQTHAQLITT----------ALISHPVSANKLLKLA 58

Query: 206 SRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265
           + + +  A ++FD++P+ D   + TM+  +                S +     N+LI  
Sbjct: 59  ACASLSYAHKLFDQIPQPDLFIYNTMIKAH----------------SLSPHSCHNSLI-- 100

Query: 266 YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
            V R L    L +  + +++    SAC N    + G+QV  + ++       E ++ V N
Sbjct: 101 -VFRSLTQ-DLGLFPNRYSFVFAFSACGNGLGVQEGEQVRIHAVKVGL----ENNVFVVN 154

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
           AL+ +Y K G V E++ +F    +RDL SWN +++AYV +G +  AK LF+ MRER+++S
Sbjct: 155 ALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAKELFDGMRERDVVS 214

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
           W+ +I+G  Q G   E L  F +M   G KP +Y    A+ +C+ L AL+ G+ +HA + 
Sbjct: 215 WSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQGKWIHAYIG 274

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGNGARAI 504
                 +     ++I MYA+CG +E+A+ VF        V  WNAMI     HG    AI
Sbjct: 275 KGEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAI 334

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
            ++EQM  E I P+++TF+ +L+AC+H  +V+EG+ YF  M   Y I P  +HY   +DL
Sbjct: 335 NVFEQMKVEKISPNKVTFIALLNACSHGYMVEEGKLYFRLMVSDYAITPEIEHYGCMVDL 394

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624
           L R+G   EA+D+I S+P  P   IW ALL  CRI+ +++ G +    +  + P+H G +
Sbjct: 395 LSRSGLLKEAEDMISSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKGMDPNHIGCH 454

Query: 625 VLLSNMYANLGRWDDAARVR---KLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQ 681
           VLLSN+Y+  GRW++A  +R   ++ RDR  KK PGCS IE+    H FLV D +HP+++
Sbjct: 455 VLLSNIYSTSGRWNEARILREKNEISRDR--KKIPGCSSIELKGTFHQFLVGDQSHPQSR 512

Query: 682 AVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQ-KEYALSTHSEKLAVAFGLMKLPGGAT 740
            +Y +L+++  +++  GYVP+   +LHD++ ++ KE ALS HSEKLA+AFGLM    G  
Sbjct: 513 EIYSFLDEMTTKLKSAGYVPELGELLHDIDDEEDKETALSVHSEKLAIAFGLMNTANGTP 572

Query: 741 VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +R++KNLR+CGDCH A KF+SKV  R I+VRD  R+HHF DG CSC DYW
Sbjct: 573 IRIVKNLRVCGDCHQATKFISKVYNRVIIVRDRTRYHHFEDGICSCKDYW 622



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 126/510 (24%), Positives = 228/510 (44%), Gaps = 101/510 (19%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIY-CKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           +  HA +I++         N+L+ +  C SL   YA  LFD+IPQPD+    T+I A+S 
Sbjct: 33  KQTHAQLITTALISHPVSANKLLKLAACASLS--YAHKLFDQIPQPDLFIYNTMIKAHSL 90

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPDNFTF 152
           S +                                + H ++ +FR + +D  + P+ ++F
Sbjct: 91  SPH--------------------------------SCHNSLIVFRSLTQDLGLFPNRYSF 118

Query: 153 TSVLSAL--ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
               SA    L V+E +Q +++H   V     +F  V+NALI +Y K           L+
Sbjct: 119 VFAFSACGNGLGVQEGEQ-VRIHAVKVGLENNVF--VVNALIGMYGKW---------GLV 166

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
           G +++VF    +RD  SW T++  YV +  +  A+E  DGM E   V+W+ +I+GYV   
Sbjct: 167 GESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVG 226

Query: 271 L---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
                     KML +  + +E+T  S ++AC+N      GK +HAY+ + E K       
Sbjct: 227 CFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLLA 286

Query: 322 PVNNALVTLYWKCGKVNEA-RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
               +++ +Y KCG++  A R  F    ++ +  WNA++  +   G+ +EA ++FE    
Sbjct: 287 ----SIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFE---- 338

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
                                      QM++E   P    F   + +C+    +E G+ L
Sbjct: 339 ---------------------------QMKVEKISPNKVTFIALLNACSHGYMVEEGK-L 370

Query: 441 HAQLVHSGY--DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQH 497
           + +L+ S Y     +     ++ + +R G+++ A  + ++MP    V+ W A++ A   +
Sbjct: 371 YFRLMVSDYAITPEIEHYGCMVDLLSRSGLLKEAEDMISSMPMAPDVAIWGALLNACRIY 430

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLS 527
            +  R   +    + +G+ P+ I    +LS
Sbjct: 431 KDMERGYRI--GRIIKGMDPNHIGCHVLLS 458



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 155/349 (44%), Gaps = 37/349 (10%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF 73
           NRY+         N +       V  H +  G +    ++N LI +Y K   +  ++ +F
Sbjct: 114 NRYSFVFAFSACGNGLGVQEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVF 173

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
                 D+ +  TLIAAY  S N+ LA+E+F+   ++ RD V ++ +I  Y        A
Sbjct: 174 QWAVDRDLYSWNTLIAAYVGSGNMSLAKELFDG--MRERDVVSWSTIIAGYVQVGCFMEA 231

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
           ++ F  M +   KP+ +T  S L+A + +V  + Q   +H  + K    +   +L ++I 
Sbjct: 232 LDFFHKMLQIGPKPNEYTLVSALAACSNLVALD-QGKWIHAYIGKGEIKMNERLLASIID 290

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
           +Y KC          +  A+R  F+   ++    W  M+ G+  +   + A    +    
Sbjct: 291 MYAKC--------GEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFE---- 338

Query: 254 NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
                             +M + +I  ++ T+ ++++AC++  +   GK ++  L+ ++ 
Sbjct: 339 ------------------QMKVEKISPNKVTFIALLNACSHGYMVEEGK-LYFRLMVSDY 379

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
             TPE  +     +V L  + G + EA D+ + MP   D+  W A+L+A
Sbjct: 380 AITPE--IEHYGCMVDLLSRSGLLKEAEDMISSMPMAPDVAIWGALLNA 426


>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
          Length = 637

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/492 (42%), Positives = 301/492 (61%), Gaps = 5/492 (1%)

Query: 300 LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAI 358
           +G  VHA  ++  A       L V NA +  Y  CG V   R +F+++P  RD+V+WNA+
Sbjct: 150 MGTHVHALAVKAGAAG----DLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAV 205

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
           L+ YV AG++  A+ +F+ M  R+ +SW+ +I G  + G  E  L +F  M  +G K  +
Sbjct: 206 LAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANE 265

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478
            A   A+++ A LG LE G+ +H  +   G   S++ G ALI MY++CG V AA  VF+ 
Sbjct: 266 AAIVTALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDA 325

Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG 538
           MP  D  +WN+MI  L  HG G  A++L+E+ + EG  P  ITF+ VL+AC+  GLV EG
Sbjct: 326 MPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEG 385

Query: 539 RRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCR 598
           RRYF+ M   Y I    +HY   +DLL RAG   EA ++I+ +   P   +W  +L+ C+
Sbjct: 386 RRYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACK 445

Query: 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGC 658
            HG +DLGI    +L +L P H G YVLL+++YA   +WD+  +VRKLM +RG  K  G 
Sbjct: 446 RHGLVDLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGW 505

Query: 659 SWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYA 718
           S +E    VH FLV D  H ++  +Y  L  +   + + GYVPD   VLHD+  ++K +A
Sbjct: 506 SLMEAHGIVHKFLVGDMNHKDSARIYNMLCTINRRLAEAGYVPDVSSVLHDIGDEEKVHA 565

Query: 719 LSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHH 778
           +  HSE+LA+A+G + +  G+ +R++KNL +CGDCH   K ++KV GREIVVRDG RFHH
Sbjct: 566 IKVHSERLAIAYGFIVVEAGSPIRIVKNLSVCGDCHEFSKMVTKVFGREIVVRDGSRFHH 625

Query: 779 FRDGKCSCGDYW 790
            +DGKCSC DYW
Sbjct: 626 MKDGKCSCHDYW 637



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 120/467 (25%), Positives = 199/467 (42%), Gaps = 109/467 (23%)

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC----------MQMHCTVVKSGTGL 183
           + LF  + R +  P +FTF  +L++L+  ++ E               +H   VK+G   
Sbjct: 110 LRLFPRLPRRN--PHSFTF--LLASLSNHLDTEPAAAGSIASRFMGTHVHALAVKAGAAG 165

Query: 184 FTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMP-ERDELSWTTMMTGYVKNDYLD 242
              V NA I  Y  C           + A R+VFDE+P  RD ++W  ++ GYV+   + 
Sbjct: 166 DLYVRNAQIHFYGVCGD---------VAAMRKVFDELPIVRDVVTWNAVLAGYVRAGMVG 216

Query: 243 AAREFLDGMSENVGVAWNALISGYVHR---ELKMLMLR------IQLDEFTYTSVISACA 293
            ARE  DGM     V+W+ +I GYV     E+ + + +      ++ +E    + +SA A
Sbjct: 217 VAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTALSAAA 276

Query: 294 NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV 353
             GL   GK VH  + R         S+ +  AL+ +Y KCG V  A+++F+ MP RD+ 
Sbjct: 277 QLGLLEQGKFVHEVVKRVGMT----MSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVF 332

Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
           +WN+++                                 LA +G G + ++LF +   EG
Sbjct: 333 AWNSMICG-------------------------------LATHGLGHDAVQLFEKFVSEG 361

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD--SSLSAGNALITMYARCGVVEA 471
           F P    F G + +C+  G ++ GR+ + +L+   YD  S +     ++ + +R G+V+ 
Sbjct: 362 FCPTSITFVGVLNACSRTGLVDEGRR-YFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQ- 419

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
                                          A+EL E M    I PD + + T+LSAC  
Sbjct: 420 ------------------------------EAVELIEGMR---IPPDPVLWGTILSACKR 446

Query: 532 AGLVKEGRRYFETMHGPYGIPPGED-HYARFIDLLCRAGKFSEAKDV 577
            GLV  G      +     + P  D +Y     +  +A K+ E + V
Sbjct: 447 HGLVDLGITVGNKL---IELDPAHDGYYVLLASIYAKAKKWDEVRKV 490



 Score =  100 bits (250), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 147/336 (43%), Gaps = 41/336 (12%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP-QPDIVARTTLIAAYSASD 95
           VHA  + +G     ++ N  I  Y     +   R +FDE+P   D+V    ++A Y  + 
Sbjct: 154 VHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGYVRAG 213

Query: 96  NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV 155
            V +ARE+F+  P+  RD V ++ +I  Y        A+ +F++M    VK +     + 
Sbjct: 214 MVGVAREVFDGMPV--RDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTA 271

Query: 156 LSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARR 215
           LSA A +   E Q   +H  V + G  +  ++  ALI +Y KC S         + AA+ 
Sbjct: 272 LSAAAQLGLLE-QGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGS---------VAAAKE 321

Query: 216 VFDEMPERDELSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
           VFD MP RD  +W +M+ G   +    DA + F   +SE           G+    +   
Sbjct: 322 VFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSE-----------GFCPTSI--- 367

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
                    T+  V++AC+ +GL   G++   Y      K   E  +     +V L  + 
Sbjct: 368 ---------TFVGVLNACSRTGLVDEGRR---YFKLMAEKYDIESEMEHYGCMVDLLSRA 415

Query: 335 GKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLID 369
           G V EA ++   M    D V W  ILSA    GL+D
Sbjct: 416 GLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVD 451



 Score = 49.3 bits (116), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 92/271 (33%), Gaps = 82/271 (30%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
             LI  YS   +V  A+E+F+  P   RD   +N+MI   + +  GH A++LF     + 
Sbjct: 304 AALIDMYSKCGSVAAAKEVFDAMP--RRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEG 361

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
             P + TF  VL+A                                              
Sbjct: 362 FCPTSITFVGVLNA---------------------------------------------C 376

Query: 205 SSRSLMGAARRVFDEMPERDELS-----WTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
           S   L+   RR F  M E+ ++      +  M+    +   +  A E ++GM        
Sbjct: 377 SRTGLVDEGRRYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIEGM-------- 428

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                            RI  D   + +++SAC   GL  LG  V   L+  +      +
Sbjct: 429 -----------------RIPPDPVLWGTILSACKRHGLVDLGITVGNKLIELDPAHDGYY 471

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
            L     L ++Y K  K +E R +   M  R
Sbjct: 472 VL-----LASIYAKAKKWDEVRKVRKLMSNR 497


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 238/719 (33%), Positives = 381/719 (52%), Gaps = 79/719 (10%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D++    LI  Y     + +A ++F++  +  R+ V + A++  +  N N   ++ LF  
Sbjct: 6   DLMLSNDLIVMYGKCGRLGVACDVFDR--MLKRNVVSWTALMCGHIQNGNPLESLLLFSK 63

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M    VKP++FTF++ L A  L+   +    Q+H   VK+G  +   V N++I +Y KC 
Sbjct: 64  MGLSGVKPNDFTFSTNLKACGLLNGLDIG-RQIHDICVKTGFDMVNVVGNSIIDMYSKC- 121

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                     +  A  +F+ MP R+ +SW  M+ GY    + + A      M E      
Sbjct: 122 --------GRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQE------ 167

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
              + G+             LDEFT+TS + AC++ G  + G Q+HA+L+      T  F
Sbjct: 168 ---VGGF-------------LDEFTFTSTLKACSDLGAIKEGNQIHAFLI------TGGF 205

Query: 320 SLPVNNA----LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
              VN A    L+ LY KCGK+  AR +                               F
Sbjct: 206 LYSVNTAVAGALIDLYVKCGKLFMARRV-------------------------------F 234

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
             + E++++SWT +I G AQ G   E ++LF Q+R    +   +  +  +   A    ++
Sbjct: 235 SHIEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQ 294

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            G+Q+HA  +       +S  N+++ MY +CG++  A  +F+ MP  + +SW  MI   G
Sbjct: 295 QGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYG 354

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
           +HG G  AI L+++M  +   PD +T+L VL  C+H+GLV++G+ YF  +   +GI    
Sbjct: 355 KHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARV 414

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
           +HYA  +DLL RAG+  EAK+++DS+P + +  IW+ LL+ CR+HG+++LG +    L +
Sbjct: 415 EHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLR 474

Query: 616 LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
           L   +   YV++SN+YA+ G W +  R+R+L++ + +KKE G SW+E+D +VH F   D 
Sbjct: 475 LDSENPVNYVMMSNIYADAGYWKECERIRELVKSKKLKKEAGRSWVEIDKEVHFFYGGDD 534

Query: 676 AHPEAQAVYKYLEQLVLEMR-KLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLM- 733
            HP  + +++ L+++   M+ +LGYV   K+ LHD+E + K   L  HSEKLA+   L+ 
Sbjct: 535 THPLTEKIHEILKEMERRMKEELGYVYGVKYALHDVEEESKMDNLRVHSEKLAIGLALVC 594

Query: 734 --KLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
                G   +RV KNLR+CGDCH   K +SK++    VVRD  RFH F DG CSC DYW
Sbjct: 595 GGLEEGRKVIRVFKNLRVCGDCHEFIKGLSKILRVVFVVRDANRFHRFEDGLCSCRDYW 653



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 113/488 (23%), Positives = 217/488 (44%), Gaps = 106/488 (21%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           +++ L+ C   N +   + R +H   + +GF     + N +ID+Y K  ++  A  +F+ 
Sbjct: 76  FSTNLKACGLLNGL--DIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEV 133

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P  ++++   +IA Y+ +   +                                  A+ 
Sbjct: 134 MPVRNLISWNAMIAGYTVAGFCE---------------------------------KALV 160

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSG--TGLFTSVLNALIS 193
           LF+ M+      D FTFTS L A + +    K+  Q+H  ++  G    + T+V  ALI 
Sbjct: 161 LFQKMQEVGGFLDEFTFTSTLKACSDL-GAIKEGNQIHAFLITGGFLYSVNTAVAGALID 219

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
           +YVKC        +  M  ARRVF  + E+  +SWT ++ GY +   L  + E    + E
Sbjct: 220 LYVKC-------GKLFM--ARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQLRE 270

Query: 254 NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
           +                       IQ+D F  +S++   A+  L + GKQ+HA+ ++   
Sbjct: 271 S----------------------SIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKV-- 306

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
            P+    + V N+++ +Y KCG +NEA  +F++MP R+++SW  +++ Y   GL      
Sbjct: 307 -PSG-VDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGL------ 358

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
                                    G+E ++LF +M+L+  +P D  +   +  C+  G 
Sbjct: 359 -------------------------GKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGL 393

Query: 434 LENGRQLHAQLV-HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMI 491
           +E G++  ++L  + G  + +     ++ +  R G ++ A  + ++MP   +V  W  ++
Sbjct: 394 VEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLL 453

Query: 492 AALGQHGN 499
           +A   HG+
Sbjct: 454 SACRVHGD 461



 Score =  119 bits (297), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 169/394 (42%), Gaps = 80/394 (20%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGF--KPREHIINRLIDIYCKSLKLVYARTLF 73
           + S L+ C     I       +HA +I+ GF       +   LID+Y K  KL  AR +F
Sbjct: 177 FTSTLKACSDLGAIKE--GNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVF 234

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
             I +  +++ T LI  Y+   N  LA  M                              
Sbjct: 235 SHIEEKHVISWTALILGYAQEGN--LAESM------------------------------ 262

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALA--LIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
            ELFR +R   ++ D F  +S++   A   +V++ K   QMH   +K  +G+  SV N++
Sbjct: 263 -ELFRQLRESSIQVDGFILSSMMGVFADFALVQQGK---QMHAFAIKVPSGVDISVCNSI 318

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           + +Y+KC          ++  A R+F EMP R+ +SWT M+TGY K+     A    D  
Sbjct: 319 LDMYLKC---------GMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFD-- 367

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
                               +M +   + D+ TY +V+  C++SGL   G++   Y  R 
Sbjct: 368 --------------------EMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQE---YFSRL 404

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAG---L 367
            +    +  +     +V L  + G++ EA+++ + MP E ++  W  +LSA    G   L
Sbjct: 405 CSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLEL 464

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEE 401
             E   +   +   N +++ +M +  A  GY +E
Sbjct: 465 GKEVGGILLRLDSENPVNYVMMSNIYADAGYWKE 498



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 16/179 (8%)

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
           G+D  LS  N LI MY +CG +  A  VF+ M   + VSW A++    Q+GN   ++ L+
Sbjct: 4   GFDLMLS--NDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLF 61

Query: 508 EQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY----ARFID 563
            +M   G+ P+  TF T L AC     +  GR+  +       +  G D         ID
Sbjct: 62  SKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDIC-----VKTGFDMVNVVGNSIID 116

Query: 564 LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622
           +  + G+ +EA  + + +P +     W A++AG  + G      + A  LFQ M    G
Sbjct: 117 MYSKCGRINEAACMFEVMPVRNLIS-WNAMIAGYTVAGF----CEKALVLFQKMQEVGG 170


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/622 (36%), Positives = 341/622 (54%), Gaps = 65/622 (10%)

Query: 169 CMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSW 228
           C  +H  V+KS       + + L+S+Y K               A+R+FDEMP +D +SW
Sbjct: 81  CSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDE---------DAQRLFDEMPNKDLVSW 131

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSV 288
            ++M+G     YL A       M    G                      Q +E T  SV
Sbjct: 132 NSLMSGLSGRGYLGACLNAFCRMRTESGR---------------------QPNEVTLLSV 170

Query: 289 ISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
           +SACA+ G    GK +H  ++                       K G   +A+ +     
Sbjct: 171 VSACADMGALDEGKSLHGVVV-----------------------KLGMSGKAKVV----- 202

Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQ 408
                  N++++ Y   G +D A  LFE M  R+L+SW  M+     NGY E+G+ LF+ 
Sbjct: 203 -------NSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNL 255

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
           M+  G  P        + +C   G       +HA +   G+++ +    AL+ +YA+ G 
Sbjct: 256 MKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGR 315

Query: 469 VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
           + A+  +F  + + D ++W AM+A    H  G  AI+L++ M+KEG+  D +TF  +LSA
Sbjct: 316 LNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSA 375

Query: 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
           C+H+GLV+EG++YFE M   Y + P  DHY+  +DLL R+G+  +A ++I S+P +PS+ 
Sbjct: 376 CSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSG 435

Query: 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648
           +W ALL  CR++GN++LG + AEQL  L P     Y++LSN+Y+  G W DA++VR LM+
Sbjct: 436 VWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMK 495

Query: 649 DRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLH 708
           +R + + PGCS+IE  NK+H F+V D  HP +  ++  LE+L+ ++R+ G  P T+FVLH
Sbjct: 496 ERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLH 555

Query: 709 DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREI 768
           D++ + K   ++ HSEKLA+AFGL+    G  + + KNLRICGDCH+  KF S +  R I
Sbjct: 556 DIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTI 615

Query: 769 VVRDGKRFHHFRDGKCSCGDYW 790
           ++RD KRFHHF DG CSC DYW
Sbjct: 616 IIRDSKRFHHFADGLCSCRDYW 637



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 146/349 (41%), Gaps = 75/349 (21%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            +S+H  ++  G   +  ++N LI++Y K   L  A  LF+E+P                
Sbjct: 183 GKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMP---------------- 226

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                            +R  V +N+M+  ++HN      ++LF  M+R  + PD  T  
Sbjct: 227 -----------------VRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMV 269

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           ++L A        +Q   +H  + + G      +  AL+++Y K            + A+
Sbjct: 270 ALLRACT-DTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKL---------GRLNAS 319

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
             +F+E+ +RD ++WT M+ GY  +     A +  D M +                    
Sbjct: 320 EDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKE------------------- 360

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGK---QVHAYLLRTEAKPTPEFSLPVNNALVTL 330
               +++D  T+T ++SAC++SGL   GK   ++ + + R E +      L   + +V L
Sbjct: 361 ---GVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPR------LDHYSCMVDL 411

Query: 331 YWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
             + G++ +A ++   MP E     W A+L A    G ++  K + E +
Sbjct: 412 LGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQL 460



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 95/198 (47%), Gaps = 16/198 (8%)

Query: 424 AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
           AI+SC  +        +HA+++ S   S    G+ L++MY + G  E A  +F+ MPN D
Sbjct: 71  AISSCTSVSYCS---AIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKD 127

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKE-GILPDRITFLTVLSACNHAGLVKEGRRYF 542
            VSWN++++ L   G     +  + +M  E G  P+ +T L+V+SAC   G + EG+   
Sbjct: 128 LVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGK--- 184

Query: 543 ETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI 599
            ++HG     G+          I++  + G    A  + + +P + S   W +++     
Sbjct: 185 -SLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVR-SLVSWNSMVVIHNH 242

Query: 600 HGNIDLGIQAAEQLFQLM 617
           +G  + G+     LF LM
Sbjct: 243 NGYAEKGM----DLFNLM 256


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 243/715 (33%), Positives = 378/715 (52%), Gaps = 96/715 (13%)

Query: 86   TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
            TL+  YS +   + A  +F    +  RD + +N+M+  Y  +      +++  ++ +   
Sbjct: 438  TLLTLYSEAGRSEDAELVFQ--AMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGK 495

Query: 146  KPDNFTFTSVLSALALIVEEEKQCMQ----MHCTVVKSGTGLFTSVLNALISVYVKCVSS 201
              ++ TF S L+A +       +C+     +H  ++ +G   F  V NAL+++Y K    
Sbjct: 496  VMNHVTFASALAACS-----NPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKL--- 547

Query: 202  PFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNA 261
                   +M  A++V   MP+ D                                V WNA
Sbjct: 548  ------GMMMEAKKVLQTMPQPDR-------------------------------VTWNA 570

Query: 262  LISGYVHRE--------LKMLMLR-IQLDEFTYTSVISAC-ANSGLFRLGKQVHAYLLRT 311
            LI G+   E         K++  + I  +  T  SV+ AC A   L + G  +HA+++ T
Sbjct: 571  LIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLT 630

Query: 312  EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
              +        V N+L+T+Y KCG +N                     S Y+        
Sbjct: 631  GFESDDY----VKNSLITMYAKCGDLNS--------------------SNYI-------- 658

Query: 372  KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
               F+ +  ++ ++W  M++  A +G GEE LK+F +MR  G     ++F+G + + A L
Sbjct: 659  ---FDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANL 715

Query: 432  GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
              LE G+QLH  ++  G++S L   NA + MY +CG +     +     N   +SWN +I
Sbjct: 716  AVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILI 775

Query: 492  AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
            +A  +HG   +A E + +MLK G  PD +TF+++LSACNH GLV EG  Y+++M   +G+
Sbjct: 776  SAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGV 835

Query: 552  PPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611
             PG +H    IDLL R+G+ S A+  I  +P  P+   W +LLA CRIHGN++L  + AE
Sbjct: 836  FPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAE 895

Query: 612  QLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFL 671
             L +L P     YVL SN+ A  G+W+D   +RK M    +KK+P CSW+++ +KVH F 
Sbjct: 896  HLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFG 955

Query: 672  VDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFG 731
            + +  HP+A  +   L +L+   ++ GYVPDT F LHDM+ +QKEY L  HSE+LA+AFG
Sbjct: 956  MGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFG 1015

Query: 732  LMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSC 786
            L+  P  +T+R+ KNLR+CGDCH+ +KF+S +VGR+IV+RD  RFHHF  GKCSC
Sbjct: 1016 LINTPESSTLRIFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSC 1070



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 157/598 (26%), Positives = 257/598 (42%), Gaps = 125/598 (20%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L   V  H+I  GF+    + N LI ++     +  A  +FD + + DI++         
Sbjct: 315 LGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIIS--------- 365

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                   +NAMI+AY+H+     ++  F  MR       N T 
Sbjct: 366 ------------------------WNAMISAYAHHGLCRESLRCFHWMRHLH-NETNSTT 400

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            S L ++   V+  K    +H  VVK G      + N L+++Y +   S           
Sbjct: 401 LSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSE---------D 451

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A  VF  M ERD +SW +MM  YV++       + LDG+               +  EL 
Sbjct: 452 AELVFQAMTERDLISWNSMMACYVQDG------KCLDGLK--------------ILAEL- 490

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
            L +   ++  T+ S ++AC+N       K VHA ++        +F L V NALVT+Y 
Sbjct: 491 -LQMGKVMNHVTFASALAACSNPECLIESKIVHALII---VAGFHDF-LIVGNALVTMYG 545

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           K G + EA+ +   MP+ D V+WNA                               +I G
Sbjct: 546 KLGMMMEAKKVLQTMPQPDRVTWNA-------------------------------LIGG 574

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA-------LENGRQLHAQLV 445
            A+N    E +K +  +R +G  P +Y     IT  + LGA       L++G  +HA +V
Sbjct: 575 HAENEEPNEAVKAYKLIREKGI-PANY-----ITMVSVLGACSAPDDLLKHGMPIHAHIV 628

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIE 505
            +G++S     N+LITMYA+CG + ++N +F+ + N   ++WNAM+AA   HG G  A++
Sbjct: 629 LTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALK 688

Query: 506 LYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG---PYGIPPGEDHYARFI 562
           ++ +M   G+  D+ +F   L+A  +  +++EG++    +HG     G           +
Sbjct: 689 IFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQ----LHGLVIKLGFESDLHVTNAAM 744

Query: 563 DLLCRAGKFSEAKDVIDSL--PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
           D+    GK  E  DV+  L  P   S   W  L++    HG      +   ++ +L P
Sbjct: 745 DMY---GKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGP 799



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 136/522 (26%), Positives = 232/522 (44%), Gaps = 82/522 (15%)

Query: 81  IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
           I    TLI  YS   N++ AR +F++  ++ R+   ++ M++ Y        A+ LF  M
Sbjct: 129 IFQTNTLINMYSKFGNIEHARYVFDE--MRHRNEASWSTMLSGYVRVGLYEEAVGLFCQM 186

Query: 141 RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVS 200
               V+P+ F   S+++A +       +  Q+H  VVK+G          L  VYV    
Sbjct: 187 WGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGI---------LGDVYVGTAL 237

Query: 201 SPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWN 260
             F  S  L+  A+++F+EMP+ + +SWT++M GY                S N G   N
Sbjct: 238 VHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSD--------------SGNPGEVLN 283

Query: 261 ALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFR---LGKQVHAYLLRTEAKPTP 317
                      +M    +  ++ T+ +V S+C   GL     LG QV  ++++       
Sbjct: 284 VY--------QRMRQEGVSGNQNTFATVTSSC---GLLEDQVLGYQVLGHIIQYGF---- 328

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
           E S+ V N+L++++     V EA  +F+ M E D++SWNA++SAY   GL  E+   F  
Sbjct: 329 EDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHW 388

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
           MR  +  + +  +S L       + LK                                G
Sbjct: 389 MRHLHNETNSTTLSSLLSVCSSVDNLKW-------------------------------G 417

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           R +H  +V  G DS++   N L+T+Y+  G  E A  VF  M   D +SWN+M+A   Q 
Sbjct: 418 RGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQD 477

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
           G     +++  ++L+ G + + +TF + L+AC++   + E +     +H    +    D 
Sbjct: 478 GKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESK----IVHALIIVAGFHDF 533

Query: 558 YA---RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
                  + +  + G   EAK V+ ++P +P    W AL+ G
Sbjct: 534 LIVGNALVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGG 574



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 137/527 (25%), Positives = 245/527 (46%), Gaps = 80/527 (15%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+   T L+  Y +   V  A+++F + P    + V + +++  YS + N    + +++ 
Sbjct: 230 DVYVGTALVHFYGSIGLVYNAQKLFEEMP--DHNVVSWTSLMVGYSDSGNPGEVLNVYQR 287

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           MR++ V  +  TF +V S+  L+ E++    Q+   +++ G     SV N+LIS++    
Sbjct: 288 MRQEGVSGNQNTFATVTSSCGLL-EDQVLGYQVLGHIIQYGFEDSVSVANSLISMF---- 342

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                SS S +  A  VFD M E D +SW  M++ Y  +      RE L          W
Sbjct: 343 -----SSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGL---CRESLRCFH------W 388

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                        M  L  + +  T +S++S C++    + G+ +H  ++    K   + 
Sbjct: 389 -------------MRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVV----KLGLDS 431

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
           ++ + N L+TLY + G+  +A  +F  M ERDL+SWN++++ YV                
Sbjct: 432 NVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYV---------------- 475

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
                          Q+G   +GLK+ +++   G       FA A+ +C+    L   + 
Sbjct: 476 ---------------QDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKI 520

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           +HA ++ +G+   L  GNAL+TMY + G++  A  V  TMP  D V+WNA+I    ++  
Sbjct: 521 VHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEE 580

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHA-GLVKEGRRYFETMHGPYGIPPGE-DH 557
              A++ Y+ + ++GI  + IT ++VL AC+    L+K G      +H    +   E D 
Sbjct: 581 PNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGM----PIHAHIVLTGFESDD 636

Query: 558 YAR--FIDLLCRAGKFSEAKDVIDSLPFKPSAPI-WEALLAGCRIHG 601
           Y +   I +  + G  + +  + D L  K  +PI W A++A    HG
Sbjct: 637 YVKNSLITMYAKCGDLNSSNYIFDGLGNK--SPITWNAMVAANAHHG 681



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 117/456 (25%), Positives = 199/456 (43%), Gaps = 92/456 (20%)

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPL-----KMRDTVFYNAMITA 123
           +R++F+ IP+   V +T   A  S    +  A  + N+TP+     +++D     +   +
Sbjct: 12  SRSVFNTIPKTP-VGKTRQWAPVST---ITTASALINETPVENFAEQVKDDDLKTSNAGS 67

Query: 124 YSHNSNGHAAIELFRDMRRDD-----VKPDNFT---FTSVLSALALIVEEEKQCMQMHCT 175
                      ++F   +  D     +   NF    F+ + S +A       + +   C 
Sbjct: 68  RRWGCLDGDIAKVFLQQQHTDYGIRCLNAVNFPLKGFSEITSQMA------GKALHAFCI 121

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
           V     G+F +  N LI++Y K  +         +  AR VFDEM  R+E SW+TM++GY
Sbjct: 122 VGSVNLGIFQT--NTLINMYSKFGN---------IEHARYVFDEMRHRNEASWSTMLSGY 170

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
           V+    +          E VG+              +M  L ++ + F   S+I+AC+ S
Sbjct: 171 VRVGLYE----------EAVGLF------------CQMWGLGVEPNGFMVASLITACSRS 208

Query: 296 G-LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS 354
           G +   G QVH ++++T                       G +             D+  
Sbjct: 209 GYMADEGFQVHGFVVKT-----------------------GILG------------DVYV 233

Query: 355 WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF 414
             A++  Y S GL+  A+ LFE M + N++SWT ++ G + +G   E L ++ +MR EG 
Sbjct: 234 GTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGV 293

Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
                 FA   +SC  L     G Q+   ++  G++ S+S  N+LI+M++    VE A  
Sbjct: 294 SGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACY 353

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
           VF+ M   D +SWNAMI+A   HG    ++  +  M
Sbjct: 354 VFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWM 389



 Score =  112 bits (281), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 111/499 (22%), Positives = 200/499 (40%), Gaps = 103/499 (20%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           +AS L  C   NP     ++ VHA +I +GF     + N L+ +Y K   ++ A+ +   
Sbjct: 502 FASALAACS--NPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQT 559

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +PQPD V                                  +NA+I  ++ N   + A++
Sbjct: 560 MPQPDRVT---------------------------------WNALIGGHAENEEPNEAVK 586

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
            ++ +R   +  +  T  SVL A +   +  K  M +H  +V +G      V N+LI++Y
Sbjct: 587 AYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMY 646

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            KC           + ++  +FD +  +  ++W  M+     +   + A +    M  NV
Sbjct: 647 AKCGD---------LNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEM-RNV 696

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           GV                      LD+F+++  ++A AN  +   G+Q+H  ++    K 
Sbjct: 697 GV---------------------NLDQFSFSGGLAATANLAVLEEGQQLHGLVI----KL 731

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
             E  L V NA + +Y KCG++++   +  Q   R  +SWN ++SA+   G   +A+  F
Sbjct: 732 GFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETF 791

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
             M                        LKL       G KP    F   +++C   G ++
Sbjct: 792 HEM------------------------LKL-------GPKPDHVTFVSLLSACNHGGLVD 820

Query: 436 NGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAA 493
            G   +  +    G    +     +I +  R G +  A      MP   + ++W +++AA
Sbjct: 821 EGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAA 880

Query: 494 LGQHGNGARAIELYEQMLK 512
              HGN   A +  E +L+
Sbjct: 881 CRIHGNLELARKTAEHLLE 899



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 70/333 (21%), Positives = 141/333 (42%), Gaps = 71/333 (21%)

Query: 340 ARDIFNQMPERDL---VSWNAILSAYVSAGLIDEA--KSLFEAMRERNLLS-------WT 387
           +R +FN +P+  +     W  + +   ++ LI+E   ++  E +++ +L +       W 
Sbjct: 12  SRSVFNTIPKTPVGKTRQWAPVSTITTASALINETPVENFAEQVKDDDLKTSNAGSRRWG 71

Query: 388 VMISGLA----QNGYGEEGLKLFSQMR--LEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
            +   +A    Q  + + G++  + +   L+GF       AG              + LH
Sbjct: 72  CLDGDIAKVFLQQQHTDYGIRCLNAVNFPLKGFSEITSQMAG--------------KALH 117

Query: 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGA 501
           A  +    +  +   N LI MY++ G +E A  VF+ M + +  SW+ M++   + G   
Sbjct: 118 AFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYE 177

Query: 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAG-LVKEGRRYFETMHGPYGIPPGEDHYAR 560
            A+ L+ QM   G+ P+     ++++AC+ +G +  EG +    +HG             
Sbjct: 178 EAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQ----VHG------------- 220

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP-H 619
               + + G   +               +  AL+     +G+I L +  A++LF+ MP H
Sbjct: 221 ---FVVKTGILGDVY-------------VGTALV---HFYGSIGL-VYNAQKLFEEMPDH 260

Query: 620 HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           +  ++  L   Y++ G   +   V + MR  GV
Sbjct: 261 NVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGV 293


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/622 (36%), Positives = 341/622 (54%), Gaps = 65/622 (10%)

Query: 169 CMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSW 228
           C  +H  V+KS       + + L+S+Y K               A+R+FDEMP +D +SW
Sbjct: 138 CSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDE---------DAQRLFDEMPNKDLVSW 188

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSV 288
            ++M+G     YL A       M    G                      Q +E T  SV
Sbjct: 189 NSLMSGLSGRGYLGACLNAFCRMRTESGR---------------------QPNEVTLLSV 227

Query: 289 ISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
           +SACA+ G    GK +H  ++                       K G   +A+ +     
Sbjct: 228 VSACADMGALDEGKSLHGVVV-----------------------KLGMSGKAKVV----- 259

Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQ 408
                  N++++ Y   G +D A  LFE M  R+L+SW  M+     NGY E+G+ LF+ 
Sbjct: 260 -------NSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNL 312

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
           M+  G  P        + +C   G       +HA +   G+++ +    AL+ +YA+ G 
Sbjct: 313 MKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGR 372

Query: 469 VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
           + A+  +F  + + D ++W AM+A    H  G  AI+L++ M+KEG+  D +TF  +LSA
Sbjct: 373 LNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSA 432

Query: 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
           C+H+GLV+EG++YFE M   Y + P  DHY+  +DLL R+G+  +A ++I S+P +PS+ 
Sbjct: 433 CSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSG 492

Query: 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648
           +W ALL  CR++GN++LG + AEQL  L P     Y++LSN+Y+  G W DA++VR LM+
Sbjct: 493 VWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMK 552

Query: 649 DRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLH 708
           +R + + PGCS+IE  NK+H F+V D  HP +  ++  LE+L+ ++R+ G  P T+FVLH
Sbjct: 553 ERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLH 612

Query: 709 DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREI 768
           D++ + K   ++ HSEKLA+AFGL+    G  + + KNLRICGDCH+  KF S +  R I
Sbjct: 613 DIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTI 672

Query: 769 VVRDGKRFHHFRDGKCSCGDYW 790
           ++RD KRFHHF DG CSC DYW
Sbjct: 673 IIRDSKRFHHFADGLCSCRDYW 694



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 146/349 (41%), Gaps = 75/349 (21%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            +S+H  ++  G   +  ++N LI++Y K   L  A  LF+E+P                
Sbjct: 240 GKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMP---------------- 283

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                            +R  V +N+M+  ++HN      ++LF  M+R  + PD  T  
Sbjct: 284 -----------------VRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMV 326

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           ++L A        +Q   +H  + + G      +  AL+++Y K            + A+
Sbjct: 327 ALLRACT-DTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKL---------GRLNAS 376

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
             +F+E+ +RD ++WT M+ GY  +     A +  D M +                    
Sbjct: 377 EDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKE------------------- 417

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGK---QVHAYLLRTEAKPTPEFSLPVNNALVTL 330
               +++D  T+T ++SAC++SGL   GK   ++ + + R E +      L   + +V L
Sbjct: 418 ---GVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPR------LDHYSCMVDL 468

Query: 331 YWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
             + G++ +A ++   MP E     W A+L A    G ++  K + E +
Sbjct: 469 LGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQL 517



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 123/280 (43%), Gaps = 25/280 (8%)

Query: 343 IFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG 402
           +FNQ   R  V WN+I+S       I   +S   A R  +L      I    +     +G
Sbjct: 54  VFNQQLTRLAVPWNSIVSPVRCGTSISHNRSF--AFRHTDL------IPKQFKRFNTNKG 105

Query: 403 LKLFSQM-RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALIT 461
             +F +  +         +   AI+SC  +        +HA+++ S   S    G+ L++
Sbjct: 106 CCIFREASQFIVVYSIVQSLVFAISSCTSVSYCS---AIHARVIKSLNYSDGFIGDRLVS 162

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE-GILPDRI 520
           MY + G  E A  +F+ MPN D VSWN++++ L   G     +  + +M  E G  P+ +
Sbjct: 163 MYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEV 222

Query: 521 TFLTVLSACNHAGLVKEGRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577
           T L+V+SAC   G + EG+    ++HG     G+          I++  + G    A  +
Sbjct: 223 TLLSVVSACADMGALDEGK----SLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQL 278

Query: 578 IDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
            + +P + S   W +++     +G  + G+     LF LM
Sbjct: 279 FEEMPVR-SLVSWNSMVVIHNHNGYAEKGM----DLFNLM 313


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/563 (39%), Positives = 327/563 (58%), Gaps = 14/563 (2%)

Query: 238 NDYLDAAREFLDGMSENVGVAWNALISGYV-----HREL----KMLMLRIQLDEFTYTSV 288
           +D+L  A+   DG        WN +I G+       R L    +ML      + +T+ S+
Sbjct: 91  SDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSL 150

Query: 289 ISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
           + AC+N        Q+HA +     K   E  +   N+L+  Y   G    A  +F+++P
Sbjct: 151 LKACSNLSALEETTQIHAQI----TKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIP 206

Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQ 408
           + D VSWN+++  Y  AG +D A +LF  M E+N +SWT MISG  Q G  +E L+LF +
Sbjct: 207 KPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHE 266

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
           M+    +P + + A A+++CA LGALE G+ +H+ L  +        G  LI MYA+CG 
Sbjct: 267 MQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGD 326

Query: 469 VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
           +  A  VF  +      +W A+I+    HG+G  AI  + +M K GI P+ ITF TVL+A
Sbjct: 327 MGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTA 386

Query: 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
           C++ GLV+EG+  F  M   Y + P  +HY   +DLL RAG   EAK  I  +P KP+A 
Sbjct: 387 CSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAV 446

Query: 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648
           IW ALL  CRIH NI+LG +  E L  + P+H G YV  +N++A   +WD AA  R+LM+
Sbjct: 447 IWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMK 506

Query: 649 DRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPD-TKFVL 707
           ++GV K PGCS I ++   H FL  D +HPE + +    + +  ++ + GYVP+    +L
Sbjct: 507 EQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWKIMRRKLEENGYVPELEDMLL 566

Query: 708 HDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGRE 767
             ++ D++E  +  HSEKLA+ +GL+K   G T+R++KNLR+C DCH   K +SK+  R+
Sbjct: 567 DLVDDDERETIVHQHSEKLAITYGLIKTKPGTTIRIMKNLRVCKDCHKVTKLISKIYKRD 626

Query: 768 IVVRDGKRFHHFRDGKCSCGDYW 790
           IV+RD  RFHHFRDGKCSCGDYW
Sbjct: 627 IVMRDRTRFHHFRDGKCSCGDYW 649



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/463 (24%), Positives = 205/463 (44%), Gaps = 66/463 (14%)

Query: 62  KSLKLVYARTLFDEIPQPDIVARTTLIA---AYSASDNVKLAREMFNKTPLKMRDTVFYN 118
           + LK ++AR L   + Q D  A T  ++   + ++SD +  A+ +F+       DT  +N
Sbjct: 57  EELKQIHARMLKTGLIQ-DSYAITKFLSCCISSTSSDFLPYAQIVFDG--FDRPDTFLWN 113

Query: 119 AMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVK 178
            MI  +S +     ++ L++ M       + +TF S+L A + +   E +  Q+H  + K
Sbjct: 114 LMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALE-ETTQIHAQITK 172

Query: 179 SGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKN 238
            G       +N+LI+ Y         ++      A  +FD +P+ D +SW +++ GY K 
Sbjct: 173 LGYENDVYAVNSLINSY---------AATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKA 223

Query: 239 DYLDAAREFLDGMSENVGVAWNALISGYV----HRELKMLMLRIQ-----LDEFTYTSVI 289
             +D A      M E   ++W  +ISGYV    H+E   L   +Q      D  +  + +
Sbjct: 224 GKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANAL 283

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
           SACA  G    GK +H+YL +T  +        +   L+ +Y KCG + EA ++F  +  
Sbjct: 284 SACAQLGALEQGKWIHSYLTKTRIR----MDSVLGCVLIDMYAKCGDMGEALEVFKNIQR 339

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
           + + +W A++S Y                               A +G+G E +  F +M
Sbjct: 340 KSVQAWTALISGY-------------------------------AYHGHGREAISKFMEM 368

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGV 468
           +  G KP    F   +T+C+  G +E G+ +   +        ++     ++ + +R G+
Sbjct: 369 QKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGL 428

Query: 469 VEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQM 510
           ++ A      MP   ++V W A++ A   H N    IEL E++
Sbjct: 429 LDEAKRFIQEMPLKPNAVIWGALLKACRIHKN----IELGEEI 467



 Score =  116 bits (290), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 161/351 (45%), Gaps = 42/351 (11%)

Query: 13  ANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTL 72
           A  + S L+ C   + +  +    +HA +   G++   + +N LI+ Y  +     A  L
Sbjct: 144 AYTFPSLLKACSNLSALEETT--QIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLL 201

Query: 73  FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
           FD IP+PD V+  ++I  Y+ +  + +A  +F K  +  ++ + +  MI+ Y        
Sbjct: 202 FDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRK--MVEKNAISWTTMISGYVQAGMHKE 259

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           A++LF +M+  DV+PDN +  + LSA A +   E Q   +H  + K+   + + +   LI
Sbjct: 260 ALQLFHEMQNSDVEPDNVSLANALSACAQLGALE-QGKWIHSYLTKTRIRMDSVLGCVLI 318

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
            +Y KC           MG A  VF  +  +   +WT +++GY    Y    RE +    
Sbjct: 319 DMYAKCGD---------MGEALEVFKNIQRKSVQAWTALISGYA---YHGHGREAISKFM 366

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT- 311
           E                   M  + I+ +  T+T+V++AC+ +GL   GK +   + R  
Sbjct: 367 E-------------------MQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDY 407

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
             KPT E        +V L  + G ++EA+    +MP + + V W A+L A
Sbjct: 408 NLKPTIEHY----GCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKA 454


>gi|359481819|ref|XP_002283419.2| PREDICTED: MATE efflux family protein 1 [Vitis vinifera]
          Length = 977

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/513 (40%), Positives = 308/513 (60%), Gaps = 47/513 (9%)

Query: 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
           ++ D+  + S   AC       +G+ VH++ ++T      +  + V +++V +Y KCG++
Sbjct: 6   VRPDDHIFPSATKACGILSRCDIGQSVHSFAVKTGY----DCDVFVGSSMVDMYAKCGEI 61

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNG 397
            +AR +F++MP+R++VSW+                                MI G +Q G
Sbjct: 62  GDARKMFDEMPDRNVVSWSG-------------------------------MIYGYSQMG 90

Query: 398 YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN 457
             EE L+LF Q  +E     D+ F+  +  C     LE G+Q+H   + + YDSS   G+
Sbjct: 91  EDEEALRLFKQALIEDLDVNDFTFSSVVRVCGNSTLLELGKQIHGLCLKTSYDSSSFVGS 150

Query: 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
           +LI++Y++CGV+E A  VF+ +P  +   WNAM+ A  QH +  +A +L++QM   G+ P
Sbjct: 151 SLISLYSKCGVIEDAYLVFHEIPIRNLGMWNAMLIACAQHAHTEKAFDLFKQMEGVGMKP 210

Query: 518 DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577
           + ITFL VL AC+HAGLV++G+ YFE M   YGI PG  HYA  +DLL RAGK  +A  +
Sbjct: 211 NFITFLCVLYACSHAGLVEKGQFYFELMK-EYGIEPGAQHYASMVDLLGRAGKLKDAVSI 269

Query: 578 IDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRW 637
           I  +P +P+  +W ALL GCRIHG+ +L    A+++F+L P  +             GR+
Sbjct: 270 IKKMPMEPTESVWGALLTGCRIHGDTELASFVADRVFELGPVSSAA-----------GRY 318

Query: 638 DDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKL 697
           ++AAR RK++RD+GVKKE G SW+E  N++H F   D +HP  + +YK LE+L  EM + 
Sbjct: 319 EEAARARKMLRDQGVKKETGLSWVEEGNRIHTFAAGDRSHPYTKDIYKKLEELGEEMERA 378

Query: 698 GYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAF 757
           GY+ DT FVL +++ ++K   +  HSE+LA+AFGL+  P    +RV+KNLR+CGDCH A 
Sbjct: 379 GYIADTSFVLQEVDGEEKNQTIRYHSERLAIAFGLISFPPERPIRVMKNLRVCGDCHTAI 438

Query: 758 KFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KFMSK  GR I+VRD  RFH F DG CSC DYW
Sbjct: 439 KFMSKCCGRTIIVRDNNRFHRFEDGNCSCRDYW 471



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 170/380 (44%), Gaps = 76/380 (20%)

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQC---MQMHCTVVKSGTGLFTSVLNALISVYV 196
           M  + V+PD+  F S   A  ++     +C     +H   VK+G      V ++++ +Y 
Sbjct: 1   MLDNGVRPDDHIFPSATKACGIL----SRCDIGQSVHSFAVKTGYDCDVFVGSSMVDMYA 56

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK-NDYLDAAREFLDGMSENV 255
           KC           +G AR++FDEMP+R+ +SW+ M+ GY +  +  +A R F   + E++
Sbjct: 57  KC---------GEIGDARKMFDEMPDRNVVSWSGMIYGYSQMGEDEEALRLFKQALIEDL 107

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
            V                       ++FT++SV+  C NS L  LGKQ+H   L+T    
Sbjct: 108 DV-----------------------NDFTFSSVVRVCGNSTLLELGKQIHGLCLKT---- 140

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
           + + S  V ++L++LY KCG + +A  +F+++P R+L  WNA+L A              
Sbjct: 141 SYDSSSFVGSSLISLYSKCGVIEDAYLVFHEIPIRNLGMWNAMLIA-------------- 186

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
                             AQ+ + E+   LF QM   G KP    F   + +C+  G +E
Sbjct: 187 -----------------CAQHAHTEKAFDLFKQMEGVGMKPNFITFLCVLYACSHAGLVE 229

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAAL 494
            G+     +   G +       +++ +  R G ++ A  +   MP   + S W A++   
Sbjct: 230 KGQFYFELMKEYGIEPGAQHYASMVDLLGRAGKLKDAVSIIKKMPMEPTESVWGALLTGC 289

Query: 495 GQHGNGARAIELYEQMLKEG 514
             HG+   A  + +++ + G
Sbjct: 290 RIHGDTELASFVADRVFELG 309



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 124/250 (49%), Gaps = 13/250 (5%)

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
           G +P D+ F  A  +C  L   + G+ +H+  V +GYD  +  G++++ MYA+CG +  A
Sbjct: 5   GVRPDDHIFPSATKACGILSRCDIGQSVHSFAVKTGYDCDVFVGSSMVDMYAKCGEIGDA 64

Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
             +F+ MP+ + VSW+ MI    Q G    A+ L++Q L E +  +  TF +V+  C ++
Sbjct: 65  RKMFDEMPDRNVVSWSGMIYGYSQMGEDEEALRLFKQALIEDLDVNDFTFSSVVRVCGNS 124

Query: 533 GLVKEGRRYFETMHGPYGIPPGEDHY----ARFIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
            L++ G++    +HG   +    D      +  I L  + G   +A  V   +P + +  
Sbjct: 125 TLLELGKQ----IHG-LCLKTSYDSSSFVGSSLISLYSKCGVIEDAYLVFHEIPIR-NLG 178

Query: 589 IWEALLAGCRIHGNIDLGIQAAEQLFQL-MPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647
           +W A+L  C  H + +      +Q+  + M  +  T++ +    ++ G  +      +LM
Sbjct: 179 MWNAMLIACAQHAHTEKAFDLFKQMEGVGMKPNFITFLCVLYACSHAGLVEKGQFYFELM 238

Query: 648 RDRGVKKEPG 657
           ++ G+  EPG
Sbjct: 239 KEYGI--EPG 246



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 148/358 (41%), Gaps = 82/358 (22%)

Query: 7   DYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKL 66
           D+I   A +    L  CD        + +SVH+  + +G+     + + ++D+Y K  ++
Sbjct: 10  DHIFPSATKACGILSRCD--------IGQSVHSFAVKTGYDCDVFVGSSMVDMYAKCGEI 61

Query: 67  VYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSH 126
             AR +FDE+P  ++V+                                 ++ MI  YS 
Sbjct: 62  GDARKMFDEMPDRNVVS---------------------------------WSGMIYGYSQ 88

Query: 127 NSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL--ALIVEEEKQCMQMHCTVVKSGTGLF 184
                 A+ LF+    +D+  ++FTF+SV+     + ++E  K   Q+H   +K+     
Sbjct: 89  MGEDEEALRLFKQALIEDLDVNDFTFSSVVRVCGNSTLLELGK---QIHGLCLKTSYDSS 145

Query: 185 TSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAA 244
           + V ++LIS+Y KC          ++  A  VF E+P R+   W  M+    ++ + + A
Sbjct: 146 SFVGSSLISLYSKC---------GVIEDAYLVFHEIPIRNLGMWNAMLIACAQHAHTEKA 196

Query: 245 REFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304
            +    M E VG+  N +                     T+  V+ AC+++GL   G+  
Sbjct: 197 FDLFKQM-EGVGMKPNFI---------------------TFLCVLYACSHAGLVEKGQFY 234

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSA 361
              +     +P  +       ++V L  + GK+ +A  I  +MP     S W A+L+ 
Sbjct: 235 FELMKEYGIEPGAQH----YASMVDLLGRAGKLKDAVSIIKKMPMEPTESVWGALLTG 288


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/610 (38%), Positives = 338/610 (55%), Gaps = 74/610 (12%)

Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND-Y 240
           GLF S  N+L S+Y K           L+  A R+FD MP R+ ++WTT++      D  
Sbjct: 103 GLFVS--NSLASMYAKF---------GLLDDALRMFDGMPVRNVVTWTTVVAALASADGR 151

Query: 241 LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRL 300
              A  FL  M  + GVA NA                     +T++SV+ AC   G+   
Sbjct: 152 KQEALRFLVAMRRD-GVAPNA---------------------YTFSSVLGACTTPGML-- 187

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
              VHA  +                          K     D+F +         ++++ 
Sbjct: 188 -TAVHASTV--------------------------KAGLDSDVFVR---------SSLID 211

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
           AYV  G +D  + +F+ M  R+L+ W  +I+G AQ+G G   ++LF +M+  GF      
Sbjct: 212 AYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGT 271

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
               + +C G+  LE GRQ+HA ++   YD  L   NAL+ MY +CG +E A+ +F+ MP
Sbjct: 272 LTSVLRACTGMVMLEAGRQVHAHVLK--YDRDLILHNALLDMYCKCGSLEDADALFHRMP 329

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
             D +SW+ M++ L Q+G    A+ +++ M  +G+ P+ +T + VL AC+HAGLV++G  
Sbjct: 330 QRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWH 389

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
           YF +M   +GI P  +H+   +DLL RAGK  EA + I  +  +P + IW  LL  CR+H
Sbjct: 390 YFRSMKRLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMH 449

Query: 601 GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSW 660
            N  L   AA ++ +L P   G  VLLSN YA+L +W DA +  K MRDRG++KEPG SW
Sbjct: 450 KNASLAAYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRSW 509

Query: 661 IEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALS 720
           IE++ +VHVF+  D +HP +  + + L +L+  ++ LGYVP T+FVL D+ ++QKE  L 
Sbjct: 510 IELEKRVHVFIAGDLSHPCSDTIIQELNRLIGRIKSLGYVPQTEFVLQDLPTEQKEDLLK 569

Query: 721 THSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFR 780
            HSEK+A+ FG M    G  +R++KNLRICGDCH   K +SK  GR IV+RD  RFHHF+
Sbjct: 570 YHSEKMAIVFGTMHAVDGKPIRIMKNLRICGDCHAFAKLVSKSEGRVIVIRDPVRFHHFQ 629

Query: 781 DGKCSCGDYW 790
           DG CSCGDYW
Sbjct: 630 DGACSCGDYW 639



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 122/490 (24%), Positives = 203/490 (41%), Gaps = 111/490 (22%)

Query: 30  TSSLARSVHAHMISSGFKPRE-----HIINRLIDIYCKSLKLVYARTLFDEIPQPDIVAR 84
           T+   R +H H+ + G  P +      + N L  +Y K   L  A  +FD +P  ++V  
Sbjct: 79  TADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDDALRMFDGMPVRNVVTW 138

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           TT++AA +++D  K                                  A+     MRRD 
Sbjct: 139 TTVVAALASADGRK--------------------------------QEALRFLVAMRRDG 166

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           V P+ +TF+SVL A             +H + VK+G      V ++LI  YVK       
Sbjct: 167 VAPNAYTFSSVLGACT----TPGMLTAVHASTVKAGLDSDVFVRSSLIDAYVKLGD---- 218

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                +   RRVFDEM  RD + W +++ G+ ++          DG+             
Sbjct: 219 -----LDGGRRVFDEMVTRDLVVWNSIIAGFAQSG---------DGV------------- 251

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
           G +   ++M       ++ T TSV+ AC    +   G+QVHA++L+ +        L ++
Sbjct: 252 GAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHVLKYDR------DLILH 305

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
           NAL+ +Y KCG + +A  +F++MP+RD++SW+ +                          
Sbjct: 306 NALLDMYCKCGSLEDADALFHRMPQRDVISWSTM-------------------------- 339

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
                +SGLAQNG   E L++F  M+ +G  P      G + +C+  G +E+G      +
Sbjct: 340 -----VSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSM 394

Query: 445 VH-SGYDSSLSAGNALITMYARCGVV-EAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
               G        N ++ +  R G + EA   +       DSV W  ++ A   H N + 
Sbjct: 395 KRLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASL 454

Query: 503 AIELYEQMLK 512
           A     ++LK
Sbjct: 455 AAYAAREILK 464



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 142/357 (39%), Gaps = 78/357 (21%)

Query: 7   DYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKL 66
           D +   A  ++S L  C      T  +  +VHA  + +G      + + LID Y K   L
Sbjct: 165 DGVAPNAYTFSSVLGAC-----TTPGMLTAVHASTVKAGLDSDVFVRSSLIDAYVKLGDL 219

Query: 67  VYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSH 126
              R +FDE+   D+V   ++IA ++ S                                
Sbjct: 220 DGGRRVFDEMVTRDLVVWNSIIAGFAQS-------------------------------- 247

Query: 127 NSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS 186
             +G  AIELF  M+      +  T TSVL A   +V  E    Q+H  V+K    L   
Sbjct: 248 -GDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAG-RQVHAHVLKYDRDLI-- 303

Query: 187 VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAARE 246
           + NAL+ +Y KC S         +  A  +F  MP+RD +SW+TM++G  +N     A  
Sbjct: 304 LHNALLDMYCKCGS---------LEDADALFHRMPQRDVISWSTMVSGLAQNGKSVEALR 354

Query: 247 FLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
             D M    GVA N                       T   V+ AC+++GL   G     
Sbjct: 355 VFDLMKSQ-GVAPN---------------------HVTMVGVLFACSHAGLVEDGWHYFR 392

Query: 307 YLLRTEA-KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
            + R    +P  E     +N +V L  + GK++EA +  + M  E D V W  +L A
Sbjct: 393 SMKRLFGIQPEREH----HNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGA 445


>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
 gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 197/436 (45%), Positives = 292/436 (66%), Gaps = 1/436 (0%)

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
            A+L AYV  G +DEA  +F+ + E+++++W+ MI G AQ G  E  +++F QM  E  K
Sbjct: 45  TALLDAYVKRGNVDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIK 104

Query: 416 PCDYAFAGAITSCAGLGA-LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
           P +Y F+G I +CA   A +E G+QLHA  + S ++++L   +AL+TMY++ G +E+A  
Sbjct: 105 PNEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFE 164

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
           VF      D VSWN++I+   QHG G +A+E++E+M ++ +  D +TF+ V+SAC H GL
Sbjct: 165 VFKRQRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGL 224

Query: 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
             EG+RYF+ M   + I P  +HY+  +DL  RAG   +A ++I+ +PF  SA +W  LL
Sbjct: 225 ANEGQRYFDIMVKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLL 284

Query: 595 AGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKK 654
           A   IH N+++G  AA++L  L P +  +YVLL+NMYA++G W + A+VRKLM ++ VKK
Sbjct: 285 AASCIHRNLEVGKLAADKLISLQPQNPASYVLLTNMYASVGNWKERAKVRKLMEEKKVKK 344

Query: 655 EPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQ 714
             G SWIEV NK + FL  D +HP +  +Y  LE+L  +++  GY PDT +V  D++ + 
Sbjct: 345 VAGYSWIEVKNKTYTFLAGDVSHPLSNQIYAKLEELSCQLKGAGYQPDTSYVFQDVDEEH 404

Query: 715 KEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGK 774
           KE  LS HSE+LA+AFGL+  P G  ++++KNLR+CGDCH+  K +S + GR+IVVRD  
Sbjct: 405 KEAILSQHSERLAIAFGLIGTPPGTPLQIVKNLRVCGDCHSVIKLISILEGRDIVVRDSN 464

Query: 775 RFHHFRDGKCSCGDYW 790
           RFHHF+ G CSCGDYW
Sbjct: 465 RFHHFKGGLCSCGDYW 480



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 167/364 (45%), Gaps = 76/364 (20%)

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M R+ +KP++FT++++L+A   +        +MH   +K       SV  AL+  YVK  
Sbjct: 1   MSREGIKPNDFTYSTILTAQPGV-----SPFEMHAQAIKRNYVKSPSVGTALLDAYVK-- 53

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK-NDYLDAAREFLDGMSENVGVA 258
                  R  +  A +VF  + E+D ++W+ M+ GY +  D   A R F           
Sbjct: 54  -------RGNVDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIF----------- 95

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACAN-SGLFRLGKQVHAYLLRTEAKPTP 317
                       ++M   +I+ +E+T++ +I+ACA  +     GKQ+HA+ +++      
Sbjct: 96  ------------VQMAKEKIKPNEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNN-- 141

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
             +L V++AL+T+Y K G +  A ++F +  ERDLVSWN+I+S Y   G   +A  +FE 
Sbjct: 142 --ALCVSSALLTMYSKRGDIESAFEVFKRQRERDLVSWNSIISGYAQHGYGRKALEVFEE 199

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
           M+ +NL                           ++G       F G I++C   G    G
Sbjct: 200 MQRQNL--------------------------EMDGV-----TFIGVISACTHTGLANEG 228

Query: 438 RQLHAQLVHSGY-DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALG 495
           ++    +V   + +  +   + ++ +Y R G++  A  + N MP   S + W  ++AA  
Sbjct: 229 QRYFDIMVKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLLAASC 288

Query: 496 QHGN 499
            H N
Sbjct: 289 IHRN 292



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 127/265 (47%), Gaps = 38/265 (14%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           T L+ AY    NV  A ++F +  ++ +D V ++AMI  Y+   +   A+ +F  M ++ 
Sbjct: 45  TALLDAYVKRGNVDEASKVFQR--IEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEK 102

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           +KP+ +TF+ +++A A      +Q  Q+H   +KS       V +AL+++Y         
Sbjct: 103 IKPNEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMY--------- 153

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
           S R  + +A  VF    ERD +SW ++++GY ++ Y   A E  + M             
Sbjct: 154 SKRGDIESAFEVFKRQRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQ---------- 203

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT-EAKPTPEFSLPV 323
                        +++D  T+  VISAC ++GL   G++    +++    +P  E     
Sbjct: 204 ------------NLEMDGVTFIGVISACTHTGLANEGQRYFDIMVKDHHIEPRMEHY--- 248

Query: 324 NNALVTLYWKCGKVNEARDIFNQMP 348
            + +V LY + G + +A +I N+MP
Sbjct: 249 -SCMVDLYGRAGMLVKAMEIINEMP 272



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 4/121 (3%)

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
           M  EG KP D+ ++  +T+  G+   E    +HAQ +   Y  S S G AL+  Y + G 
Sbjct: 1   MSREGIKPNDFTYSTILTAQPGVSPFE----MHAQAIKRNYVKSPSVGTALLDAYVKRGN 56

Query: 469 VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
           V+ A+ VF  +   D V+W+AMI    Q G+   A+ ++ QM KE I P+  TF  +++A
Sbjct: 57  VDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINA 116

Query: 529 C 529
           C
Sbjct: 117 C 117


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 255/729 (34%), Positives = 388/729 (53%), Gaps = 80/729 (10%)

Query: 72  LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           + D   + D      L+  Y    ++  A+ +F K   + R+ + ++ M  A++ + N  
Sbjct: 84  VVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKME-RTRNVISWSIMAGAHALHGNVW 142

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALA--LIVEEEKQCMQMHCTVVKSGTGLFTSVLN 189
            A+  FR M    +K       ++LSA +   +V++ +    +H  +  SG      V N
Sbjct: 143 EALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRM---IHSCIALSGFESELLVAN 199

Query: 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD 249
           A++++Y +C           +  AR+VFD M E                    A R+   
Sbjct: 200 AVMTMYGRC---------GAVEEARKVFDAMDE--------------------ALRDV-- 228

Query: 250 GMSENVGVAWNALISGYVH----RELKMLMLRIQL--DEFTYTSVISACANSGLFRLGKQ 303
                  V+WN ++S YVH    ++   L  R+QL  D+ TY S++SAC+++    LG+ 
Sbjct: 229 -------VSWNIMLSTYVHNDRGKDAIQLYQRMQLRPDKVTYVSLLSACSSAEDVGLGRV 281

Query: 304 VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV 363
           +H  ++  E     E ++ V NALV++Y KCG   EAR +F++M +R ++SW  I+SAYV
Sbjct: 282 LHKQIVNDEL----EKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYV 337

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
              L+ EA  LF+ M E            L +NG  +              KP   AF  
Sbjct: 338 RRRLVAEACHLFQQMLE------------LEKNGSSQR------------VKPDALAFVT 373

Query: 424 AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
            + +CA + ALE G+ +  Q    G  S  + G A++ +Y +CG +E A  +F+ + +  
Sbjct: 374 ILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRP 433

Query: 484 SVS-WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
            V  WNAMIA   Q G    A++L+ +M  EG+ PD  +F+++L AC+H GL  +G+ YF
Sbjct: 434 DVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYF 493

Query: 543 ETMHGPY-GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
            +M   Y  +     H+    DLL R G+  EA++ ++ LP KP A  W +LLA CR H 
Sbjct: 494 TSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHR 553

Query: 602 NIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWI 661
           ++    + A +L +L P  A  YV LSN+YA L +W   A+VRK M ++GVKKE G S I
Sbjct: 554 DLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTI 613

Query: 662 EVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALST 721
           E+   +H F   D AHP  + + + L +L  +M++ GYVPDTK VLH ++  +KE  L +
Sbjct: 614 EIGKYMHDFATGDDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFS 673

Query: 722 HSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRD 781
           HSE+LA+A GL+  P G  +RV KNLR+C DCH A K +SK+ GR+IVVRD  RFH F+D
Sbjct: 674 HSERLAIALGLISTPLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKD 733

Query: 782 GKCSCGDYW 790
           GKCSC DYW
Sbjct: 734 GKCSCQDYW 742



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 158/331 (47%), Gaps = 61/331 (18%)

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
           G A+  FD + +R+  SWT ++  +            + G S+    A            
Sbjct: 9   GDAKAAFDALEQRNLYSWTGLVAAFA-----------ISGQSKETLRALE---------- 47

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
            +M    ++ D  T+ + + +C +    R G ++H  ++ +  +  P+    V+NAL+ +
Sbjct: 48  -RMRQDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPK----VSNALLNM 102

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y KCG ++ A+ +F +M                               R RN++SW++M 
Sbjct: 103 YKKCGSLSHAKRVFAKME------------------------------RTRNVISWSIMA 132

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
              A +G   E L+ F  M L G K    A    +++C+    +++GR +H+ +  SG++
Sbjct: 133 GAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALSGFE 192

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNV--DSVSWNAMIAALGQHGNGARAIELYE 508
           S L   NA++TMY RCG VE A  VF+ M     D VSWN M++    +  G  AI+LY+
Sbjct: 193 SELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQ 252

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
           +M    + PD++T++++LSAC+ A  V  GR
Sbjct: 253 RM---QLRPDKVTYVSLLSACSSAEDVGLGR 280



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 150/330 (45%), Gaps = 26/330 (7%)

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
           +AK+ F+A+ +RNL SWT +++  A +G  +E L+   +MR +G +P    F  A+ SC 
Sbjct: 10  DAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCG 69

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV-SWN 488
              +L +G ++H  +V S  +      NAL+ MY +CG +  A  VF  M    +V SW+
Sbjct: 70  DPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWS 129

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP 548
            M  A   HGN   A+  +  ML  GI   +   +T+LSAC+   LV++GR     +H  
Sbjct: 130 IMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGR----MIHSC 185

Query: 549 YGIPPGEDHYA---RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDL 605
             +   E         + +  R G   EA+ V D++       +   ++    +H   D 
Sbjct: 186 IALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHN--DR 243

Query: 606 GIQAAE--QLFQLMPHHAGTYVLLSNMYA----NLGRWDDAARVRKLMRDRGVKKEPGCS 659
           G  A +  Q  QL P       LLS   +     LGR       ++++ D   K      
Sbjct: 244 GKDAIQLYQRMQLRPDKVTYVSLLSACSSAEDVGLGR----VLHKQIVNDELEKN----- 294

Query: 660 WIEVDNKVHVFLVDDTAHPEAQAVYKYLEQ 689
            + V N +        +H EA+AV+  +EQ
Sbjct: 295 -VIVGNALVSMYAKCGSHTEARAVFDKMEQ 323



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 143/348 (41%), Gaps = 64/348 (18%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y S L  C     +   L R +H  +++   +    + N L+ +Y K      AR +FD+
Sbjct: 263 YVSLLSACSSAEDV--GLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDK 320

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           + Q  I++ TT+I+AY     V  A  +F +                           +E
Sbjct: 321 MEQRSIISWTTIISAYVRRRLVAEACHLFQQM--------------------------LE 354

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           L ++     VKPD   F ++L+A A +   E+  M         G     +V  A++++Y
Sbjct: 355 LEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSE-QAASCGLSSDKAVGTAVVNLY 413

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELS-WTTMMTGYVKNDYLDAAREFLDGMSEN 254
            KC           +  ARR+FD +  R ++  W  M+  Y +               E 
Sbjct: 414 GKC---------GEIEEARRIFDAVCSRPDVQLWNAMIAVYAQ----------FGQSHEA 454

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
           + + W            +M M  ++ D F++ S++ AC+++GL   GK     +  TE +
Sbjct: 455 LKLFW------------RMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMT-TEYR 501

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
                ++     +  L  + G++ EA +   ++P + D V+W ++L+A
Sbjct: 502 NVTR-TIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAA 548



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 3/143 (2%)

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           MYA C     A   F+ +   +  SW  ++AA    G     +   E+M ++G+ PD +T
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 522 FLTVLSACNHAGLVKEGRRYFE-TMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580
           F+T L +C     +++G R  +  +     I P   +    +++  + G  S AK V   
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNA--LLNMYKKCGSLSHAKRVFAK 118

Query: 581 LPFKPSAPIWEALLAGCRIHGNI 603
           +    +   W  +     +HGN+
Sbjct: 119 MERTRNVISWSIMAGAHALHGNV 141


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 267/775 (34%), Positives = 401/775 (51%), Gaps = 110/775 (14%)

Query: 28  PITSSLA-----RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIV 82
           P+ ++LA     R+VH   + SG+     + N L+D+Y K  ++  A   F E P     
Sbjct: 173 PMCAALAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMYAKCGEMADAECAFLEAP----- 227

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR 142
                                    P   R+ V +N M+  Y+ N    AA  L R+M+ 
Sbjct: 228 -------------------------PGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQM 262

Query: 143 DD--VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL-NALISVYVKCV 199
           ++  V  D  T  SVL   + + E  K   ++H  VV+ G  L   ++ NALI+ Y +C 
Sbjct: 263 EERGVPADEITMLSVLPVCSGLPELAK-LRELHAFVVRRGLHLTGDMVPNALIAAYGRC- 320

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                     +  A RVFD +  +   SW  ++  + +N    AA E    M+   G   
Sbjct: 321 --------GCLLHACRVFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQ-- 370

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                              + D F+  S++ AC N      GK  H ++LR         
Sbjct: 371 -------------------KPDWFSIGSLLLACGNLKHLLHGKAAHGFILR--------- 402

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
                N L                     E+D     ++LS Y+  G    A+ LF+A+ 
Sbjct: 403 -----NGL---------------------EKDSFIRVSLLSVYIQCGRESLARVLFDAVE 436

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE--GFKPCDYAFAGAITSCAGLGALENG 437
           E++ +SW  MI+G +QNG   E L+LF +M+ +  G  P   A   A+ +C+ L A+  G
Sbjct: 437 EKDEVSWNTMIAGYSQNGLPGESLQLFREMQSKKGGHWPSLLAATSALVACSELPAVRLG 496

Query: 438 RQLHAQLVHSGY--DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
           +++H   + +    DS LS  +++I MY++CG V+ A   F+ +   D+VSW  MI    
Sbjct: 497 KEMHCFALKADLCEDSFLS--SSIIDMYSKCGSVDDARVFFDRLKAKDAVSWTVMITGYA 554

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
            +G G  A+ LY++M +EG+ PD  T+L +L AC HAG++++G  +F+ M     I    
Sbjct: 555 VNGRGKEAVGLYDKMGREGMEPDGFTYLGLLMACGHAGMLEDGLCFFQEMRNLPKIEAKL 614

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
           +HYA  I +L RAG+F++A  +++ +P +P A I  ++L+ C +HG ++LG + A++L +
Sbjct: 615 EHYACVIGMLSRAGRFADAVALMEVMPEEPDAKILSSVLSACHMHGEVELGKKVADKLLE 674

Query: 616 LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
           L PH A  YVL SNMYA   +WD+  +VRK++RD GV KEPGCSWI++  KV+ F+  + 
Sbjct: 675 LEPHKAEHYVLASNMYAGSRQWDEMRKVRKMLRDAGVAKEPGCSWIDIAGKVYSFVAGEN 734

Query: 676 AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKL 735
           + PE   V K    L  ++R  GY PDT  +LH++E ++K  AL  HSEK A+AFGL++ 
Sbjct: 735 SLPEMHKVRKMWYSLEEKIRAAGYAPDTTVMLHELEEEEKVEALRWHSEKQAIAFGLLRT 794

Query: 736 PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            G   VRV KN+R+C DCHNA K +SKV  REIVVRD KRFHHFRDG CSCGDYW
Sbjct: 795 AGPTKVRVFKNIRMCKDCHNAAKLISKVADREIVVRDKKRFHHFRDGLCSCGDYW 849



 Score =  143 bits (360), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 140/537 (26%), Positives = 226/537 (42%), Gaps = 92/537 (17%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D     +L++ Y     V  A ++F    +  R+ V +NA++ A +    G   +ELFRD
Sbjct: 98  DPFVGNSLVSMYGRCGRVDDAEKVFEG--MAGRNLVSWNALMAAVADPRRG---LELFRD 152

Query: 140 MRRD---DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
              D      PD  T  +VL   A +   E     +H   VKSG      V N L+ +Y 
Sbjct: 153 CLEDLGGTAAPDEATLVTVLPMCAALAWPETG-RAVHGLAVKSGWDAAPRVSNVLVDMYA 211

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPE---RDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
           KC           M  A   F E P    R+ +SW  M+ GY +N    AA   L     
Sbjct: 212 KC---------GEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLL----- 257

Query: 254 NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGK--QVHAYLLRT 311
                          RE++M    +  DE T  SV+  C  SGL  L K  ++HA+++R 
Sbjct: 258 ---------------REMQMEERGVPADEITMLSVLPVC--SGLPELAKLRELHAFVVRR 300

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
               T +    V NAL+  Y +CG +  A  +F+ +  + + SWNA++ A+         
Sbjct: 301 GLHLTGDM---VPNALIAAYGRCGCLLHACRVFDGICSKMVSSWNALIGAH--------- 348

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RLEGFKPCDYAFAGAITSCAG 430
                                 AQNG     ++LF +M    G KP  ++    + +C  
Sbjct: 349 ----------------------AQNGEASAAIELFREMTNACGQKPDWFSIGSLLLACGN 386

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
           L  L +G+  H  ++ +G +       +L+++Y +CG    A  +F+ +   D VSWN M
Sbjct: 387 LKHLLHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTM 446

Query: 491 IAALGQHGNGARAIELYEQML--KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP 548
           IA   Q+G    +++L+ +M   K G  P  +   + L AC+    V+ G+     MH  
Sbjct: 447 IAGYSQNGLPGESLQLFREMQSKKGGHWPSLLAATSALVACSELPAVRLGKE----MH-C 501

Query: 549 YGIPPG--EDHY--ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
           + +     ED +  +  ID+  + G   +A+   D L  K  A  W  ++ G  ++G
Sbjct: 502 FALKADLCEDSFLSSSIIDMYSKCGSVDDARVFFDRLKAK-DAVSWTVMITGYAVNG 557



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 121/464 (26%), Positives = 188/464 (40%), Gaps = 85/464 (18%)

Query: 143 DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS-VLNALISVYVKCVSS 201
           D V PD FT    L +            Q+H    K G       V N+L+S+Y +C   
Sbjct: 61  DGVAPDRFTLPPALKSC-----RGDDGRQVHAVAAKLGLADGDPFVGNSLVSMYGRC--- 112

Query: 202 PFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNA 261
                   +  A +VF+ M  R+ +SW  +M      D       F D + +  G A   
Sbjct: 113 ------GRVDDAEKVFEGMAGRNLVSWNALMAAVA--DPRRGLELFRDCLEDLGGTA--- 161

Query: 262 LISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
                              DE T  +V+  CA       G+ VH   +++     P    
Sbjct: 162 -----------------APDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPR--- 201

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
            V+N LV +Y KCG++ +A   F + P    R++VSWN +L  Y   G   EA + F  +
Sbjct: 202 -VSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNG---EAGAAFGLL 257

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
           RE                           QM   G    +      +  C+GL  L   R
Sbjct: 258 REM--------------------------QMEERGVPADEITMLSVLPVCSGLPELAKLR 291

Query: 439 QLHAQLVHSG-YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           +LHA +V  G + +     NALI  Y RCG +  A  VF+ + +    SWNA+I A  Q+
Sbjct: 292 ELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMVSSWNALIGAHAQN 351

Query: 498 GNGARAIELYEQMLKE-GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG-- 554
           G  + AIEL+ +M    G  PD  +  ++L AC +   +  G+      HG + +  G  
Sbjct: 352 GEASAAIELFREMTNACGQKPDWFSIGSLLLACGNLKHLLHGK----AAHG-FILRNGLE 406

Query: 555 EDHYAR--FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           +D + R   + +  + G+ S A+ + D++  K     W  ++AG
Sbjct: 407 KDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDEVS-WNTMIAG 449



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 24/227 (10%)

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRL--EGFKPCDYAFAGAITSCAGLGALENGRQ 439
           +L  W  +++ L++ G   + L +  ++    +G  P  +    A+ SC G    ++GRQ
Sbjct: 29  SLPQWNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSCRG----DDGRQ 84

Query: 440 LHAQLVHSGY-DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           +HA     G  D     GN+L++MY RCG V+ A  VF  M   + VSWNA++AA+    
Sbjct: 85  VHAVAAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAV---A 141

Query: 499 NGARAIELYEQMLKE---GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
           +  R +EL+   L++      PD  T +TVL  C      + GR     +HG   +  G 
Sbjct: 142 DPRRGLELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGR----AVHG-LAVKSGW 196

Query: 556 DHYAR----FIDLLCRAGKFSEAKDVIDSLPFKPSAPI--WEALLAG 596
           D   R     +D+  + G+ ++A+      P      +  W  +L G
Sbjct: 197 DAAPRVSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGG 243


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 253/757 (33%), Positives = 386/757 (50%), Gaps = 101/757 (13%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R  H  M  +   P E + N ++ +YCK   L  AR +FDE                  
Sbjct: 29  GRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADARKVFDE------------------ 70

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                          ++ R+ V +N +I+AY+ N        +F +M   + KP+  T+ 
Sbjct: 71  ---------------MRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYI 115

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
             L +L L     +   Q+H   ++SG G   SV  A+ ++YVKC           +  A
Sbjct: 116 GFLRSL-LNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKC---------GWLEGA 165

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
             VF++M E++ ++WT +M GY +      A   +D +         AL +       KM
Sbjct: 166 ELVFEKMSEKNAVAWTGIMVGYTQ------AERQMDAL---------ALFA-------KM 203

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
           +   ++LDE+ ++ V+ ACA       G+Q+H +++    K   E  + V   LV  Y K
Sbjct: 204 VNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIV----KLGLESEVSVGTPLVDFYVK 259

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
           C  +  A   F  + E + VSW+A+++ Y   G  +EA   FE++R R     +V I+  
Sbjct: 260 CSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTR-----SVDIN-- 312

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL 453
                                    + +     +C+ L    +G Q HA  + S   +  
Sbjct: 313 ------------------------SFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQ 348

Query: 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE 513
              +A+ITMY+RCG ++ A  VF ++ + D+V+W A+IA     GN   A++L+ +M   
Sbjct: 349 HGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDC 408

Query: 514 GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE 573
           G+ P+ +TF+ VL+AC+H+GLV EGR+Y E+M   YG+    DHY   +D+  RAG   E
Sbjct: 409 GVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQE 468

Query: 574 AKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN 633
           A ++I S+PF P A  W+ LL GC  + N+++G  AAE LFQL P     Y+L+ N+YA+
Sbjct: 469 ALELIRSMPFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDPEDTAGYILMFNLYAS 528

Query: 634 LGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLE 693
            G+W +AA VRK+M +R ++KE  CSWI V  KVH F+V D  HP+ + +Y  LE L   
Sbjct: 529 FGKWKEAANVRKMMAERNLRKELSCSWITVKGKVHRFIVGDKHHPQTEEIYSKLEALNDS 588

Query: 694 MRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDC 753
           + K      T+  + +   ++KE  L  HSE+LA+AFGL+  P  A V V KNLR C DC
Sbjct: 589 VIKEETGLLTEEDVSNSLPERKEQLL-VHSERLALAFGLISTPSSAPVVVFKNLRACKDC 647

Query: 754 HNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           H+  K +S + GREIVVRD  RFHHF+ G+CSC DYW
Sbjct: 648 HDFGKQVSLITGREIVVRDSFRFHHFKLGECSCNDYW 684



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 165/366 (45%), Gaps = 51/366 (13%)

Query: 330 LYWKCGKVNEARD--IFNQMPERDLVS-----WNAILSAYVSAGLIDEAKSLFEAMRERN 382
           L+  CGK+    D  +F++  +R + +      N++L  Y   G + +A+ +F+ MRERN
Sbjct: 16  LFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADARKVFDEMRERN 75

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
           L+SW  +IS  A+NG  ++G  +FS M     KP    + G + S      LE G+Q+H+
Sbjct: 76  LVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEIGKQIHS 135

Query: 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
             + SG  S+ S   A+  MY +CG +E A  VF  M   ++V+W  ++    Q      
Sbjct: 136 HAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAERQMD 195

Query: 503 AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG-----------PYGI 551
           A+ L+ +M+ EG+  D   F  VL AC  AGL  E   +   +HG             G 
Sbjct: 196 ALALFAKMVNEGVELDEYVFSIVLKAC--AGL--EELNFGRQIHGHIVKLGLESEVSVGT 251

Query: 552 P-----------------------PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP--- 585
           P                       P +  ++  I   C+ G+F EA    +SL  +    
Sbjct: 252 PLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDI 311

Query: 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQ--LMPHHAGTYVLLSNMYANLGRWDDAARV 643
           ++  + ++   C    + + G QA     +  L+ +  G   +++ MY+  GR D A RV
Sbjct: 312 NSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMIT-MYSRCGRLDYATRV 370

Query: 644 RKLMRD 649
            + + D
Sbjct: 371 FESIDD 376



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 134/329 (40%), Gaps = 69/329 (20%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           +  R +H H++  G +    +   L+D Y K   L  A   F+ I +P+ V+        
Sbjct: 229 NFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVS-------- 280

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                                    ++A+IT Y        A++ F  +R   V  ++FT
Sbjct: 281 -------------------------WSALITGYCQMGEFEEALKTFESLRTRSVDINSFT 315

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           +TS+  A + + +      Q H   +KS    +    +A+I++Y +C           + 
Sbjct: 316 YTSIFQACSALADFNSGA-QAHADAIKSSLVAYQHGESAMITMYSRC---------GRLD 365

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A RVF+ + + D ++WT ++ GY        A +    M ++ GV  NA+         
Sbjct: 366 YATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRM-QDCGVRPNAV--------- 415

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                       T+ +V++AC++SGL   G+Q   YL    +      ++   + +V +Y
Sbjct: 416 ------------TFIAVLTACSHSGLVIEGRQ---YLESMSSNYGVATTIDHYDCMVDIY 460

Query: 332 WKCGKVNEARDIFNQMP-ERDLVSWNAIL 359
            + G + EA ++   MP   D +SW  +L
Sbjct: 461 SRAGFLQEALELIRSMPFSPDAMSWKCLL 489



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 87/225 (38%), Gaps = 55/225 (24%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y S  Q C       S      HA  I S     +H  + +I +Y +  +L YA  +F+ 
Sbjct: 316 YTSIFQACSALADFNS--GAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFES 373

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           I  PD VA T +IA                                  Y++  N   A++
Sbjct: 374 IDDPDAVAWTAIIA---------------------------------GYAYQGNAPEALK 400

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALA---LIVEEEKQCMQMHCTVVKSGTGLFTSV--LNA 190
           LFR M+   V+P+  TF +VL+A +   L++E  +    M      S  G+ T++   + 
Sbjct: 401 LFRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESM-----SSNYGVATTIDHYDC 455

Query: 191 LISVYVKCVSSPFVSSRSLMGAARRVFDEMP-ERDELSWTTMMTG 234
           ++ +Y         S    +  A  +   MP   D +SW  ++ G
Sbjct: 456 MVDIY---------SRAGFLQEALELIRSMPFSPDAMSWKCLLGG 491


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/591 (36%), Positives = 337/591 (57%), Gaps = 53/591 (8%)

Query: 249 DGMSENVGVAWNALI----SGYVHRELKMLMLRIQL-------DEFTYTSVISACANSGL 297
           DG S    V +N LI    +  +HR+  +L   ++        D +TY   + +C+ S  
Sbjct: 79  DGRSRTTTVCFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSASKD 138

Query: 298 FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA 357
             LG Q+H+ +    AK   + ++ V ++ +++Y +CG+  +A  +F+ MP RD+VSWNA
Sbjct: 139 LLLGLQIHSAV----AKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNA 194

Query: 358 ILSAYVSAGLIDEA--------------------------------------KSLFEAMR 379
           +++ +   GL D A                                      + +F+ M+
Sbjct: 195 MIAGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPAMGNAKPDDIRFVRRVFDNMQ 254

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
            + L+SW  M++  A N +  + ++LF  M  +  +P     A  +  C  L A   G++
Sbjct: 255 FKELISWNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKR 314

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           +H  +       +L   NAL+ MYA CG ++ A  +F+ M   D +SW ++I+A G+HG+
Sbjct: 315 IHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVISWTSIISAYGKHGH 374

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA 559
           G  A++L+E+ML +G+ PD I F+ VL+AC+HAGL+ +G+ YF++M   Y I P  +HY 
Sbjct: 375 GREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEHYT 434

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
             +DLL RAG  +EA D I ++  +P+  +W ALL  CRIH N+D+G+ AA+ LF L+P 
Sbjct: 435 CMVDLLGRAGCINEAYDFITTMLIEPNERVWGALLQACRIHSNMDIGLVAADNLFSLVPE 494

Query: 620 HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPE 679
             G YVLLSNMYA  GRW D   VR +M ++G+KK PG S +E+ ++VH F + D  HP+
Sbjct: 495 QTGYYVLLSNMYARAGRWADVTSVRSVMVNKGIKKFPGTSIVELGDQVHTFHIGDRCHPQ 554

Query: 680 AQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGA 739
           ++ +Y  L++L+ ++R +GY P+ +  LHD+E + KE  LS HSEKLA+AF L+    G 
Sbjct: 555 SEMIYHKLDELLGKIRGMGYNPEVEATLHDVEEEDKEDHLSVHSEKLAIAFLLLNTSPGT 614

Query: 740 TVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            +RV  NLR C DCH A K +S +  REIV++D  R HH   G CSCGDYW
Sbjct: 615 IIRVTMNLRTCSDCHLAAKLISIITCREIVLKDTNRIHHIVQGVCSCGDYW 665



 Score =  132 bits (332), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 129/524 (24%), Positives = 213/524 (40%), Gaps = 109/524 (20%)

Query: 63  SLKLVYARTLFDEIP-QPDIV-ARTTLIAAYSASDNVKLAREMFNKTPLKMRD---TVFY 117
           SL+  +AR L    P  P    A   LI AY+A   + LA  +   +    R    TV +
Sbjct: 30  SLRAAHARLLVLLHPSHPSAAHANVKLIQAYAACSALPLAHTVLESSSPDGRSRTTTVCF 89

Query: 118 NAMITAYSHNSNGHAAIELFRDMRRDDVK--PDNFTFTSVLSALALIVEEEKQCMQMHCT 175
           N +I A + +S    A+ LF  MR       PD++T+   L + +   ++    +Q+H  
Sbjct: 90  NVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCS-ASKDLLLGLQIHSA 148

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
           V K        V ++ IS+Y +C              A RVFD MP RD +SW  M+ G+
Sbjct: 149 VAKLRLDRNVYVAHSAISMYSRCGRPE---------DAYRVFDGMPHRDVVSWNAMIAGF 199

Query: 236 VKNDYLDAA--------------------------------------REFLDGMSENVGV 257
            +    D A                                      R   D M     +
Sbjct: 200 ARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPAMGNAKPDDIRFVRRVFDNMQFKELI 259

Query: 258 AWNALISGYVHR-------ELKMLMLR--IQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
           +WNA+++ Y +        EL MLM +  ++ D  T  +V+  C     F +GK++H  +
Sbjct: 260 SWNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEII 319

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
            R    P    +L + NAL+ +Y  CG + +AR+IF+ M  RD++SW +I+SAY      
Sbjct: 320 KRKNMCP----NLLLENALMDMYASCGCLKDAREIFDLMSARDVISWTSIISAY------ 369

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
                                     ++G+G E + LF +M  +G +P   AF   + +C
Sbjct: 370 -------------------------GKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAAC 404

Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGN--ALITMYARCGVVEAANCVFNTM---PNVD 483
           +  G L +G+     +  S Y     A +   ++ +  R G +  A     TM   PN  
Sbjct: 405 SHAGLLADGKHYFDSMT-SRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTMLIEPN-- 461

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
              W A++ A   H N    +   + +    ++P++  +  +LS
Sbjct: 462 ERVWGALLQACRIHSNMDIGLVAADNLFS--LVPEQTGYYVLLS 503



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 140/324 (43%), Gaps = 32/324 (9%)

Query: 358 ILSAYVSAGLIDEAKSLFEAM----RERNL-LSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
           ++ AY +   +  A ++ E+     R R   + + V+I  L  +    + L LF+ MR  
Sbjct: 56  LIQAYAACSALPLAHTVLESSSPDGRSRTTTVCFNVLIRALTASSLHRDALVLFASMRPR 115

Query: 413 GFK--PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
           G    P  Y +  A+ SC+    L  G Q+H+ +     D ++   ++ I+MY+RCG  E
Sbjct: 116 GPACFPDHYTYPLALKSCSASKDLLLGLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRPE 175

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ-MLKEGILPDRITFLTVLSAC 529
            A  VF+ MP+ D VSWNAMIA   + G   RAIE+++Q ++ +G +PD  T   +L A 
Sbjct: 176 DAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPAM 235

Query: 530 NHAGL--VKEGRRYFETM--------HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579
            +A    ++  RR F+ M        +    +    + + + ++L     K     D I 
Sbjct: 236 GNAKPDDIRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSIT 295

Query: 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639
                P      A   G RIH  I         L +           L +MYA+ G   D
Sbjct: 296 LATVLPPCGELSAFSVGKRIHEIIKRKNMCPNLLLE---------NALMDMYASCGCLKD 346

Query: 640 AARVRKLMRDRGVKKEPGCSWIEV 663
           A  +  LM  R V      SW  +
Sbjct: 347 AREIFDLMSARDV-----ISWTSI 365



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 148/329 (44%), Gaps = 49/329 (14%)

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
           D+++  R +F+   ++ ++ + +NAM+  Y++N     A+ELF  M +D+V+PD+ T  +
Sbjct: 241 DDIRFVRRVFDN--MQFKELISWNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLAT 298

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           VL     +        ++H  + +        + NAL+ +Y  C           +  AR
Sbjct: 299 VLPPCGEL-SAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASC---------GCLKDAR 348

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
            +FD M  RD +SWT++++ Y K+ +    RE +D                      KML
Sbjct: 349 EIFDLMSARDVISWTSIISAYGKHGH---GREAVDLFE-------------------KML 386

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL-RTEAKPTPEFSLPVNNALVTLYWK 333
              ++ D   + +V++AC+++GL   GK     +  R    P  E        +V L  +
Sbjct: 387 GQGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEHY----TCMVDLLGR 442

Query: 334 CGKVNEARDIFNQM-PERDLVSWNAILSAY-----VSAGLIDEAKSLFEAMRERNLLSWT 387
            G +NEA D    M  E +   W A+L A      +  GL+  A +LF  + E+    + 
Sbjct: 443 AGCINEAYDFITTMLIEPNERVWGALLQACRIHSNMDIGLV-AADNLFSLVPEQT--GYY 499

Query: 388 VMISGL-AQNGYGEEGLKLFSQMRLEGFK 415
           V++S + A+ G   +   + S M  +G K
Sbjct: 500 VLLSNMYARAGRWADVTSVRSVMVNKGIK 528


>gi|297811097|ref|XP_002873432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319269|gb|EFH49691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 970

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 256/709 (36%), Positives = 391/709 (55%), Gaps = 98/709 (13%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           L+  Y+   ++  AR +F    +  +D+V +N+MIT    NS    A+E ++ MRR ++ 
Sbjct: 355 LVNMYAKCGSIADARRVF--CFMTEKDSVSWNSMITGLDQNSCFIEAVERYQSMRRHEIL 412

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           P +FT  S +S+ A + +  K   Q+H   +K G  L  SV NAL+++Y +         
Sbjct: 413 PGSFTLISSISSCASL-KWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAE--------- 462

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              +   R++F  MPE D++SW +++     ++           + E V    NAL +G 
Sbjct: 463 TGCLNECRKIFSSMPEHDQVSWNSIIGALASSE---------RSLPEAVACFLNALRAGQ 513

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                       +L+  T++SV+SA ++     LGKQ+H   L+              NA
Sbjct: 514 ------------KLNRITFSSVLSAVSSLSFGELGKQIHGLALKYNIADEA----TTENA 557

Query: 327 LVTLYWKCGKVNEARDIFNQMPE-RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
           L+  Y KCG+++    IF++M E RD V+WN+++S Y+   L+ +A  L           
Sbjct: 558 LIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMISGYIHNELLAKALDLV---------- 607

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
           W +M +G                 RL+ F      +A  +++ A +  LE G ++HA  V
Sbjct: 608 WFMMQTG----------------QRLDSF-----MYATVLSAFASVATLERGMEVHACSV 646

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIE 505
            +  +S +  G+AL+ MY++CG ++ A   FNTMP                         
Sbjct: 647 RACLESDVVVGSALVDMYSKCGRLDYALRFFNTMP------------------------- 681

Query: 506 LYEQMLKEG-ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
           L+  M  +G   PD +TF+ VLSAC+HAGL++EG ++FE+M   YG+ P  +H++   DL
Sbjct: 682 LFANMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADL 741

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALL-AGCRIHG-NIDLGIQAAEQLFQLMPHHAG 622
           L RAG+  + +D I+ +P KP+  IW  +L A CR +G   +LG +AAE LFQL P +A 
Sbjct: 742 LGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAV 801

Query: 623 TYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQA 682
            YVLL NMYA  GRW+D  + RK M+D  VKKE G SW+ + + VH+F+  D +HP+A  
Sbjct: 802 NYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADV 861

Query: 683 VYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGL-MKLPGGATV 741
           +YK L++L  +MR  GYVP T F L+D+E + KE  LS HSEKLAVAF L  +      +
Sbjct: 862 IYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPI 921

Query: 742 RVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           R++KNLR+CGDCH+AFK +SK+ GR+I++RD  RFHHF+DG+CSC D+W
Sbjct: 922 RIMKNLRVCGDCHSAFKHISKIEGRQIILRDSNRFHHFQDGECSCSDFW 970



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 142/596 (23%), Positives = 257/596 (43%), Gaps = 110/596 (18%)

Query: 11  TLANRYA--SQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCK-SLKLV 67
             +N YA  S L+ C   + +     R +H  +    +     + N LI +Y K    L 
Sbjct: 98  VFSNHYAFVSALRACQELDSVGILFGRQIHGLLFKLSYAVDAVVSNVLISMYWKCGGSLG 157

Query: 68  YARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHN 127
           YA   FD++                                 +++++V +N++I+ YS  
Sbjct: 158 YALRAFDDV---------------------------------QVKNSVSWNSIISVYSQT 184

Query: 128 SNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM-QMHCTVVKSG--TGLF 184
            +   A ++F  M+ D  +P  +TF S+++    + E + + + Q+ CT+ KSG  T LF
Sbjct: 185 GDQRFAFKMFYSMQCDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGFLTDLF 244

Query: 185 TSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAA 244
             V + L+S + K        S SL+  AR++F++M  R+ ++   +M G V+  + + A
Sbjct: 245 --VGSGLVSAFAK--------SGSLI-HARKIFNQMETRNAVTLNGLMVGLVRQKWGEEA 293

Query: 245 REFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304
            +    M+  + V+  + +              I L  F   S+    A     + G++V
Sbjct: 294 TKLFMDMNSMIDVSPESYV--------------ILLSSFPEYSL----AEEVGLKKGREV 335

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVS 364
           H +++ T      +F + + N LV +Y KCG                             
Sbjct: 336 HGHVITT---GLVDFMVGIGNGLVNMYAKCGS---------------------------- 364

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
              I +A+ +F  M E++ +SW  MI+GL QN    E ++ +  MR     P  +    +
Sbjct: 365 ---IADARRVFCFMTEKDSVSWNSMITGLDQNSCFIEAVERYQSMRRHEILPGSFTLISS 421

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           I+SCA L   + G+Q+H + +  G D ++S  NAL+T+YA  G +     +F++MP  D 
Sbjct: 422 ISSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGCLNECRKIFSSMPEHDQ 481

Query: 485 VSWNAMIAALGQHGNG-ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFE 543
           VSWN++I AL         A+  +   L+ G   +RITF +VLSA +     + G++   
Sbjct: 482 VSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITFSSVLSAVSSLSFGELGKQ--- 538

Query: 544 TMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
            +HG    Y I          I    + G+    + +   +  +     W ++++G
Sbjct: 539 -IHGLALKYNIADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMISG 593



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 141/539 (26%), Positives = 234/539 (43%), Gaps = 103/539 (19%)

Query: 65  KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAY 124
           KL ++R L+    + D+     LI AY  + +   AR++F++ PL  R+ V +  +++ Y
Sbjct: 21  KLFHSR-LYKNGLEKDVYLCNNLINAYLETGDSVSARKVFDEMPL--RNCVSWACVVSGY 77

Query: 125 SHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM------QMHCTVVK 178
           S N     A+   RDM ++ V  +++ F S L A      +E   +      Q+H  + K
Sbjct: 78  SRNGEHKEALVFLRDMVKEGVFSNHYAFVSALRAC-----QELDSVGILFGRQIHGLLFK 132

Query: 179 SGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKN 238
               +   V N LIS+Y KC  S        +G A R FD++  ++ +SW ++++ Y + 
Sbjct: 133 LSYAVDAVVSNVLISMYWKCGGS--------LGYALRAFDDVQVKNSVSWNSIISVYSQ- 183

Query: 239 DYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLD-----EFTYTSVI-SAC 292
                                    +G      KM    +Q D     E+T+ S++ +AC
Sbjct: 184 -------------------------TGDQRFAFKMF-YSMQCDGSRPTEYTFGSLVTTAC 217

Query: 293 A-NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           +      RL +Q+    + T  K      L V + LV+ + K G +  AR IFNQM  R+
Sbjct: 218 SLTEPDVRLLEQI----MCTIQKSGFLTDLFVGSGLVSAFAKSGSLIHARKIFNQMETRN 273

Query: 352 LVSWNAILSAYVSAGLIDEAKSLF---EAMRERNLLSWTVMISGLAQNGYGEE-GLKLFS 407
            V+ N ++   V     +EA  LF    +M + +  S+ +++S   +    EE GLK   
Sbjct: 274 AVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLK--- 330

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY-DSSLSAGNALITMYARC 466
                                        GR++H  ++ +G  D  +  GN L+ MYA+C
Sbjct: 331 ----------------------------KGREVHGHVITTGLVDFMVGIGNGLVNMYAKC 362

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G +  A  VF  M   DSVSWN+MI  L Q+     A+E Y+ M +  ILP   T ++ +
Sbjct: 363 GSIADARRVFCFMTEKDSVSWNSMITGLDQNSCFIEAVERYQSMRRHEILPGSFTLISSI 422

Query: 527 SACNHAGLVKEGRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582
           S+C      K G++    +HG     GI          + L    G  +E + +  S+P
Sbjct: 423 SSCASLKWAKLGQQ----IHGESLKLGIDLNVSVSNALMTLYAETGCLNECRKIFSSMP 477



 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 133/502 (26%), Positives = 214/502 (42%), Gaps = 107/502 (21%)

Query: 44  SGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREM 103
           SGF     + + L+  + KS  L++AR +F++                            
Sbjct: 237 SGFLTDLFVGSGLVSAFAKSGSLIHARKIFNQ---------------------------- 268

Query: 104 FNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR-DDVKPDNFTFTSVLSAL-AL 161
                ++ R+ V  N ++        G  A +LF DM    DV P+++    +LS+    
Sbjct: 269 -----METRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVI--LLSSFPEY 321

Query: 162 IVEEE---KQCMQMHCTVVKSG-TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVF 217
            + EE   K+  ++H  V+ +G       + N L+++Y KC S         +  ARRVF
Sbjct: 322 SLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGS---------IADARRVF 372

Query: 218 DEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLR 277
             M E+D +SW +M+TG      LD    F++                 V R   M    
Sbjct: 373 CFMTEKDSVSWNSMITG------LDQNSCFIEA----------------VERYQSMRRHE 410

Query: 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
           I    FT  S IS+CA+    +LG+Q+H   L    K   + ++ V+NAL+TLY + G +
Sbjct: 411 ILPGSFTLISSISSCASLKWAKLGQQIHGESL----KLGIDLNVSVSNALMTLYAETGCL 466

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNG 397
           NE R IF+ MPE D VSWN+I+ A  S+              ER+L              
Sbjct: 467 NECRKIFSSMPEHDQVSWNSIIGALASS--------------ERSL-------------- 498

Query: 398 YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN 457
              E +  F      G K     F+  +++ + L   E G+Q+H   +        +  N
Sbjct: 499 --PEAVACFLNALRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKYNIADEATTEN 556

Query: 458 ALITMYARCGVVEAANCVFNTMPN-VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
           ALI  Y +CG ++    +F+ M    D V+WN+MI+    +   A+A++L   M++ G  
Sbjct: 557 ALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMISGYIHNELLAKALDLVWFMMQTGQR 616

Query: 517 PDRITFLTVLSACNHAGLVKEG 538
            D   + TVLSA      ++ G
Sbjct: 617 LDSFMYATVLSAFASVATLERG 638



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 111/476 (23%), Positives = 200/476 (42%), Gaps = 95/476 (19%)

Query: 173 HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMM 232
           H  + K+G      + N LI+ Y++   S          +AR+VFDEMP R+ +SW  ++
Sbjct: 24  HSRLYKNGLEKDVYLCNNLINAYLETGDSV---------SARKVFDEMPLRNCVSWACVV 74

Query: 233 TGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISAC 292
           +GY +N     A  FL  M +  GV  N                      + + S + AC
Sbjct: 75  SGYSRNGEHKEALVFLRDMVKE-GVFSN---------------------HYAFVSALRAC 112

Query: 293 A--NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
              +S     G+Q+H  L     K +      V+N L+++YWKCG               
Sbjct: 113 QELDSVGILFGRQIHGLLF----KLSYAVDAVVSNVLISMYWKCG--------------- 153

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
                          G +  A   F+ ++ +N +SW  +IS  +Q G      K+F  M+
Sbjct: 154 ---------------GSLGYALRAFDDVQVKNSVSWNSIISVYSQTGDQRFAFKMFYSMQ 198

Query: 411 LEGFKPCDYAFAGAITSCAGLGA--LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
            +G +P +Y F   +T+   L    +    Q+   +  SG+ + L  G+ L++ +A+ G 
Sbjct: 199 CDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGFLTDLFVGSGLVSAFAKSGS 258

Query: 469 VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
           +  A  +FN M   ++V+ N ++  L +   G  A +L+  M    I     +++ +LS+
Sbjct: 259 LIHARKIFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDM-NSMIDVSPESYVILLSS 317

Query: 529 CNHAGLVKE-GRRYFETMHGP----------YGIPPGEDHYARFIDLLCRAGKFSEAKDV 577
                L +E G +    +HG            GI  G       +++  + G  ++A+ V
Sbjct: 318 FPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNG------LVNMYAKCGSIADARRV 371

Query: 578 IDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA---GTYVLLSNM 630
              +  K S   W +++ G   +      I+A E+ +Q M  H    G++ L+S++
Sbjct: 372 FCFMTEKDSVS-WNSMITGLDQNSCF---IEAVER-YQSMRRHEILPGSFTLISSI 422



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 4/123 (3%)

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           + SC  +G     +  H++L  +G +  +   N LI  Y   G   +A  VF+ MP  + 
Sbjct: 10  VQSC--IGHRGAAKLFHSRLYKNGLEKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNC 67

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
           VSW  +++   ++G    A+     M+KEG+  +   F++ L AC     V  G  +   
Sbjct: 68  VSWACVVSGYSRNGEHKEALVFLRDMVKEGVFSNHYAFVSALRACQELDSV--GILFGRQ 125

Query: 545 MHG 547
           +HG
Sbjct: 126 IHG 128


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 274/821 (33%), Positives = 422/821 (51%), Gaps = 69/821 (8%)

Query: 9   IRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHII-NRLIDIYCKSLKLV 67
           +R     YA  LQ C     +     R +H+  +     P   I+ N ++ +Y       
Sbjct: 39  VRAENATYARLLQRCARAQALPE--GRKIHSLAVKHNLLPGNLILGNHIVSMYAHCDSPG 96

Query: 68  YARTLFDEIPQPDIVARTTLIAAYSASDNVK---LAREMFNKTPLKMRDTVFYNAMITAY 124
            A+  FD + Q ++ + T L+AA++ S   K    A E   +  ++     F  A+ +  
Sbjct: 97  DAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCG 156

Query: 125 SHNS--NGHAAIELFRDMRRD-DVKPDNFTFT------SVLSALALIVEEEKQCMQMHCT 175
              S  +G    ++  D R + D K  N          S+  A  +  + E+    +  +
Sbjct: 157 DPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWS 216

Query: 176 VVKSGTGLFTSVLNAL------ISVYVKCVSSPFV------SSRSLMGAARRVFDEMP-- 221
           ++     L  +V  AL      + + +K   S  V      SS +L+   R +   +   
Sbjct: 217 IMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALS 276

Query: 222 --ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG--VAWNALISGYVH----RELKM 273
             E + L    +MT Y +   ++ AR+  D M E +   V+WN ++S YVH    ++   
Sbjct: 277 GFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQ 336

Query: 274 LMLRIQL--DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
           L  R+QL  D+ TY S++SAC+++    LG+ +H  ++  E     E ++ V NALV++Y
Sbjct: 337 LYQRMQLRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDEL----EKNVIVGNALVSMY 392

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            KCG   EAR +F++M +R ++SW  I+SAYV   L+ EA  LF+ M E           
Sbjct: 393 AKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLE----------- 441

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
            L +NG  +              KP   AF   + +CA + ALE G+ +  Q    G  S
Sbjct: 442 -LEKNGSSQR------------VKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSS 488

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGNGARAIELYEQM 510
             + G A++ +Y +CG +E    +F+ + +   V  WNAMIA   Q G    A++L+ +M
Sbjct: 489 DKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRM 548

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY-GIPPGEDHYARFIDLLCRAG 569
             EG+ PD  +F+++L AC+H GL  +G+ YF +M   Y  +     H+    DLL R G
Sbjct: 549 EMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGG 608

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629
           +  EA++ ++ LP KP A  W +LLA CR H ++    + A +L +L P  A  YV LSN
Sbjct: 609 RLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSN 668

Query: 630 MYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQ 689
           +YA L +W   A+VRK M ++GVKKE G S IE+   +H F   D AHP  + + + L +
Sbjct: 669 IYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAK 728

Query: 690 LVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRI 749
           L  +M++ GYVPDTK VLH ++  +KE  L +HSE+LA+A GL+  P G  +RV KNLR+
Sbjct: 729 LHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSERLAIALGLISTPLGTPLRVTKNLRV 788

Query: 750 CGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           C DCH A K +SK+ GR+IVVRD  RFH F+DGKCSC DYW
Sbjct: 789 CSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 829


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/584 (38%), Positives = 339/584 (58%), Gaps = 50/584 (8%)

Query: 222 ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL-----ISGYVHREL----K 272
           ++D    T ++  + + D +D AR+  D   +     WNAL     ++G  +  L    +
Sbjct: 101 DQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPR 160

Query: 273 MLMLRIQLDEFTYTSVISACANS----GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALV 328
           M M+ +  D FTYT ++ AC  S       + GK++HA++LR        +   V+  + 
Sbjct: 161 MNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHG------YGAHVH-VMT 213

Query: 329 TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV 388
           TL                            +  Y   G +  A ++F+ M  +N++SW+ 
Sbjct: 214 TL----------------------------MDMYARFGCVSYASAVFDEMPVKNVVSWSA 245

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFK--PCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
           MI+  A+NG   E L+LF +M L      P        + +CA   ALE G+ +HA ++ 
Sbjct: 246 MIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILR 305

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
            G DS L   +ALITMYARCG +E+   +F+ M   D V WN++I++ G HG G +AI++
Sbjct: 306 RGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKI 365

Query: 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
           +E+M+  G  P  I+F++VL AC+H GLV+EG++ FE+M   +GI P  +HYA  +DLL 
Sbjct: 366 FEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLG 425

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626
           RA +  EA  +I+ L  +P   +W +LL  CRIH +++L  +A+++LF+L P +AG YVL
Sbjct: 426 RANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFKLEPTNAGNYVL 485

Query: 627 LSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKY 686
           L+++YA    WD+  RV+KL+  R ++K PG SWIEV  K++ F   D  +P+ + ++  
Sbjct: 486 LADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRKIYSFTSVDEFNPQGEQLHAL 545

Query: 687 LEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKN 746
           L  L  EM++ GY P TK VL+D++ ++KE  +  HSEKLAVAFGL+    G T+R+ KN
Sbjct: 546 LVNLSNEMKQRGYTPQTKLVLYDLDQEEKERIVLGHSEKLAVAFGLINTSKGDTIRITKN 605

Query: 747 LRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           LR+C DCH+  KF+SK   REI+VRD  RFHHF+DG CSCGDYW
Sbjct: 606 LRLCEDCHSVTKFISKFADREIMVRDLNRFHHFKDGVCSCGDYW 649



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 120/447 (26%), Positives = 200/447 (44%), Gaps = 83/447 (18%)

Query: 73  FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
           FD+ P       T LI  +S  D V  AR++F+KT  + R    +NA+  A +    G+ 
Sbjct: 100 FDQDP----FLATKLINMFSELDTVDNARKVFDKT--RKRTIYVWNALFRALALAGRGND 153

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALA---LIVEEEKQCMQMHCTVVKSGTGLFTSVLN 189
            +EL+  M    V  D FT+T +L A      +V   ++  ++H  +++ G G    V+ 
Sbjct: 154 VLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMT 213

Query: 190 ALISVYVK--CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREF 247
            L+ +Y +  CVS            A  VFDEMP ++ +SW+ M+  Y KN         
Sbjct: 214 TLMDMYARFGCVS-----------YASAVFDEMPVKNVVSWSAMIACYAKN--------- 253

Query: 248 LDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY 307
                   G  + AL    + RE+ +       +  T  SV+ ACA       GK +HAY
Sbjct: 254 --------GKPYEAL---ELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAY 302

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367
           +LR          LPV +AL+T+Y +CGK+   + IF++M ++D+V WN+++S+Y   GL
Sbjct: 303 ILRRGLDSI----LPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSY---GL 355

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
                                       +GYG + +K+F +M   GF P   +F   + +
Sbjct: 356 ----------------------------HGYGRKAIKIFEEMIDHGFSPSHISFISVLGA 387

Query: 428 CAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVV-EAANCVFNTMPNVDSV 485
           C+  G +E G++L   +V   G   S+     ++ +  R   + EAA  + +        
Sbjct: 388 CSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPK 447

Query: 486 SWNAMIAALGQHGNGARAIELYEQMLK 512
            W +++ A   H +    +EL E+  K
Sbjct: 448 VWGSLLGACRIHCH----VELAERASK 470



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 151/352 (42%), Gaps = 75/352 (21%)

Query: 16  YASQLQLCDPRNPITSSL--ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF 73
           Y   L+ C     + S L   + +HAH++  G+    H++  L+D+Y +   + YA  +F
Sbjct: 173 YTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVF 232

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
           DE+P  ++V+ + +IA Y+                                  N   + A
Sbjct: 233 DEMPVKNVVSWSAMIACYAK---------------------------------NGKPYEA 259

Query: 134 IELFRDMRRD--DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
           +ELFR+M  +  D  P++ T  SVL A A     E Q   +H  +++ G      V++AL
Sbjct: 260 LELFREMMLNTHDSVPNSVTMVSVLQACAAFAALE-QGKLIHAYILRRGLDSILPVISAL 318

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           I++Y +C           + + + +FD M ++D + W ++++ Y  + Y   A +  + M
Sbjct: 319 ITMYARC---------GKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEM 369

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
            ++          G+                 ++ SV+ AC+++GL   GK++   +++ 
Sbjct: 370 IDH----------GF------------SPSHISFISVLGACSHTGLVEEGKKLFESMVKE 407

Query: 312 EA-KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
              +P+ E        +V L  +  +++EA  I   +  E     W ++L A
Sbjct: 408 HGIQPSVEHY----ACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGA 455


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  427 bits (1099), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 240/715 (33%), Positives = 373/715 (52%), Gaps = 88/715 (12%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
             LI+ Y+ S+ ++ A  +F++ P   RD + +N++I   + N     A+ELF  M  + 
Sbjct: 23  NALISFYAKSNRIEDALMVFDEMP--QRDIISWNSIIGGCASNGLYDKAVELFVRMWLEG 80

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKS-------GTGLF--TSVLNALISVY 195
            + D+ T  SV+ A          C+Q H + +          TGL   TS+ NAL+ +Y
Sbjct: 81  QELDSTTLLSVMPA----------CVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMY 130

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
             C         S   +  ++F  M +++ +SWT M+T Y +  + D     + G+ + +
Sbjct: 131 SNC---------SDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDK----VAGLFQEM 177

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           G+                    I+ D F  TS + A A +   + GK VH Y +R   + 
Sbjct: 178 GLE------------------GIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEE 219

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
                LPV NAL+ +Y KC                               G ++EA+ +F
Sbjct: 220 V----LPVANALMEMYVKC-------------------------------GYMEEARFIF 244

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
           + + +++ +SW  +I G +++    E   LF++M L+  +P     A  + + A L +LE
Sbjct: 245 DHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLSSLE 303

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            GR++HA  V  GY       NAL+ MY +CG +  A  +F+ + N + +SW  MIA  G
Sbjct: 304 RGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYG 363

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
            HG G  AI L+EQM   GI PD  +F  +L AC+H+GL  EG R+F  M   + I P  
Sbjct: 364 MHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKL 423

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
            HYA  +DLLC  G   EA + I+++P +P + IW +LL GCRIH N+ L  + AE +F+
Sbjct: 424 KHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFE 483

Query: 616 LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
           L P + G YVLL+N+YA   RW+   +++  +  RG+++  GCSWIEV  K H+F  ++ 
Sbjct: 484 LEPENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWIEVRGKAHIFFAENR 543

Query: 676 AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKL 735
            HP+   + ++L+ +   M++ G+ P  K+ L   +    + AL  HS KLAVAFG++ L
Sbjct: 544 NHPQGMRIAEFLDDVARRMQEEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGVLNL 603

Query: 736 PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             G  +RV KN R+C  CH A KF+SK+ GREI++RD  RFHHF +G+CSC  YW
Sbjct: 604 SQGRPIRVTKNSRVCSHCHEAAKFISKMCGREIILRDSNRFHHFEEGRCSCRGYW 658



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 143/529 (27%), Positives = 233/529 (44%), Gaps = 89/529 (16%)

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H  +VK G G   +V NALIS Y K       S+R  +  A  VFDEMP+RD +SW ++
Sbjct: 6   VHGYLVKYGFGAQCAVCNALISFYAK-------SNR--IEDALMVFDEMPQRDIISWNSI 56

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           + G   N   D A E                        ++M +   +LD  T  SV+ A
Sbjct: 57  IGGCASNGLYDKAVELF----------------------VRMWLEGQELDSTTLLSVMPA 94

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           C  S    +G  VH Y +RT      E SL   NAL+ +Y  C        IF  M +++
Sbjct: 95  CVQSHYSFIGGVVHGYSVRT--GLISETSL--GNALLDMYSNCSDWRSTNKIFRNMEQKN 150

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
           +VSW A++++Y  AG  D+   LF+                               +M L
Sbjct: 151 VVSWTAMITSYTRAGHFDKVAGLFQ-------------------------------EMGL 179

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
           EG +P  +A   A+ + AG  +L++G+ +H   + +G +  L   NAL+ MY +CG +E 
Sbjct: 180 EGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEE 239

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
           A  +F+ +   D++SWN +I    +      A  L+ +ML + + P+ +T   +L A   
Sbjct: 240 ARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAAS 298

Query: 532 AGLVKEGRRYFETMHGPYGIPPG--EDHYA--RFIDLLCRAGKFSEAKDVIDSLPFKPSA 587
              ++ GR     MH  Y +  G  ED++     +D+  + G    A+ + D L  K + 
Sbjct: 299 LSSLERGRE----MH-AYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNK-NL 352

Query: 588 PIWEALLAGCRIHGNIDLGIQAAEQL--FQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645
             W  ++AG  +HG     I   EQ+    + P  AG++  +    ++ G  D+  R   
Sbjct: 353 ISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQP-DAGSFSAILYACSHSGLRDEGWRFFN 411

Query: 646 LMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHP-EAQAVYKYLEQLVLE 693
            MR+           IE   K +  +VD   H    +  Y+++E + +E
Sbjct: 412 AMRNE--------HRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIE 452



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 106/448 (23%), Positives = 192/448 (42%), Gaps = 109/448 (24%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           VH +++  GF  +  + N LI  Y KS ++  A  +FDE+PQ DI++  ++I   +++  
Sbjct: 6   VHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGL 65

Query: 97  VKLAREMFNKTPLK-------------------------------------MRDTVFYNA 119
              A E+F +  L+                                     + +T   NA
Sbjct: 66  YDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNA 125

Query: 120 MITAYSHNSNGHAAIELFRDMRRDDV-------------------------------KPD 148
           ++  YS+ S+  +  ++FR+M + +V                               +PD
Sbjct: 126 LLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPD 185

Query: 149 NFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
            F  TS L A A   E  K    +H   +++G      V NAL+ +YVKC          
Sbjct: 186 VFAITSALDAFAG-NESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKC---------G 235

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
            M  AR +FD + ++D +SW T++ GY +++  + A    + M                 
Sbjct: 236 YMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEM----------------- 278

Query: 269 RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALV 328
                 +L+++ +  T   ++ A A+      G+++HAY +R        F   V NALV
Sbjct: 279 ------LLQLRPNAVTMACILPAAASLSSLERGREMHAYAVR-RGYLEDNF---VANALV 328

Query: 329 TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL---- 384
            +Y KCG +  AR +F+ +  ++L+SW  +++ Y   G   +A +LFE M+   +     
Sbjct: 329 DMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAG 388

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLE 412
           S++ ++   + +G  +EG + F+ MR E
Sbjct: 389 SFSAILYACSHSGLRDEGWRFFNAMRNE 416



 Score =  108 bits (271), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 146/330 (44%), Gaps = 58/330 (17%)

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           G  VH YL++            V NAL++ Y K  ++ +A  +F++MP+RD++SWN+I+ 
Sbjct: 3   GLVVHGYLVKYGFGA----QCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIG 58

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC--- 417
              S GL D+A  LF  M       W              EG +L S   L     C   
Sbjct: 59  GCASNGLYDKAVELFVRM-------WL-------------EGQELDSTTLLSVMPACVQS 98

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
            Y+F G +              +H   V +G  S  S GNAL+ MY+ C    + N +F 
Sbjct: 99  HYSFIGGV--------------VHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFR 144

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKE 537
            M   + VSW AMI +  + G+  +   L+++M  EGI PD     + L A   AG   E
Sbjct: 145 NMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDA--FAG--NE 200

Query: 538 GRRYFETMHGPYGIPPGEDHY----ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEAL 593
             ++ +++HG Y I  G +         +++  + G   EA+ + D +  K +   W  L
Sbjct: 201 SLKHGKSVHG-YAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTIS-WNTL 258

Query: 594 LAGCRIHGNIDLGIQA----AEQLFQLMPH 619
           + G   +   +L  +A     E L QL P+
Sbjct: 259 IGG---YSRSNLANEAFTLFNEMLLQLRPN 285



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 135/327 (41%), Gaps = 70/327 (21%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            +SVH + I +G +    + N L+++Y K   +  AR +FD + + D ++  TLI  YS 
Sbjct: 205 GKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSR 264

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
           S+    A  +FN+  L++R                                  P+  T  
Sbjct: 265 SNLANEAFTLFNEMLLQLR----------------------------------PNAVTMA 290

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
            +L A A +   E+   +MH   V+ G      V NAL+ +YVKC           +  A
Sbjct: 291 CILPAAASLSSLERG-REMHAYAVRRGYLEDNFVANALVDMYVKC---------GALLLA 340

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           RR+FD +  ++ +SWT M+ GY  +     A    + M            SG        
Sbjct: 341 RRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKG----------SG-------- 382

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
               IQ D  ++++++ AC++SGL   G +     +R E +  P+  L     +V L   
Sbjct: 383 ----IQPDAGSFSAILYACSHSGLRDEGWRFFN-AMRNEHRIEPK--LKHYACMVDLLCH 435

Query: 334 CGKVNEARDIFNQMP-ERDLVSWNAIL 359
            G + EA +    MP E D   W ++L
Sbjct: 436 TGNLKEAYEFIETMPIEPDSSIWVSLL 462



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 54/94 (57%)

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
           +G  +H  LV  G+ +  +  NALI+ YA+   +E A  VF+ MP  D +SWN++I    
Sbjct: 2   DGLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCA 61

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
            +G   +A+EL+ +M  EG   D  T L+V+ AC
Sbjct: 62  SNGLYDKAVELFVRMWLEGQELDSTTLLSVMPAC 95



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 38/136 (27%)

Query: 28  PITSSLA-----RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIV 82
           P  +SL+     R +HA+ +  G+     + N L+D+Y K   L+ AR LFD +   +++
Sbjct: 294 PAAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLI 353

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR 142
           + T +IA Y                                   +  G  AI LF  M+ 
Sbjct: 354 SWTIMIAGYGM---------------------------------HGRGRDAIALFEQMKG 380

Query: 143 DDVKPDNFTFTSVLSA 158
             ++PD  +F+++L A
Sbjct: 381 SGIQPDAGSFSAILYA 396


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/680 (33%), Positives = 372/680 (54%), Gaps = 69/680 (10%)

Query: 113 DTVFYNAMITAYSHNSNGHAAIELFRDM-RRDDVKPDNFTFTSVLSALALIVEEEKQCMQ 171
           D + +N+M+ A+ +++    A++ + +M  R    PD FTF S+L   AL++E  K    
Sbjct: 42  DVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEF-KVGKV 100

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H  VVK        +   L+++Y  C           + +AR +F+ M  R+++ WT+M
Sbjct: 101 LHGQVVKYMLHSDLYIETTLLNMYAACGD---------LKSARFLFERMGHRNKVVWTSM 151

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           ++GY+KN   + A      M E+          G+              DE T  +++SA
Sbjct: 152 ISGYMKNHCPNEALLLYKKMEED----------GF------------SPDEVTMATLVSA 189

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           CA      +G ++H+++   + K        + +ALV +Y KCG +  AR +        
Sbjct: 190 CAELKDLGVGMKLHSHIREMDMK----ICAVLGSALVNMYAKCGDLKTARQV-------- 237

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
                                  F+ + ++++ +W+ +I G  +N    E L+LF ++  
Sbjct: 238 -----------------------FDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAG 274

Query: 412 -EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
               +P +      I++CA LG LE GR +H  +  +    S+S  N+LI M+++CG ++
Sbjct: 275 GSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDID 334

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
           AA  +F++M   D +SWN+M+     HG G  A+  +  M    + PD ITF+ VL+AC+
Sbjct: 335 AAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACS 394

Query: 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590
           HAGLV+EG++ F  +   YG+    +HY   +DLLCRAG  +EA++ I  +P +P   IW
Sbjct: 395 HAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIW 454

Query: 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650
            ++L  CR++ N++LG +AA  L +L P + G Y+LLSN+YA    W++  +VR+LM ++
Sbjct: 455 GSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEK 514

Query: 651 GVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDM 710
           G++K PGCS + +DN  H FL  D +HPE   +   L Q+  +++  GYV DT  VL ++
Sbjct: 515 GIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLAGYVADTSEVLLNI 574

Query: 711 ESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVV 770
           + ++KE ++S HSEKLA+ +GL+K   G  + +LKNLR+C DCH   K +SK+  R+I +
Sbjct: 575 DDNKKEESVSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITL 634

Query: 771 RDGKRFHHFRDGKCSCGDYW 790
           RD  RFHHF+DG CSC DYW
Sbjct: 635 RDRNRFHHFKDGSCSCRDYW 654



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 200/425 (47%), Gaps = 72/425 (16%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
             D+   TTL+  Y+A  ++K AR +F +  +  R+ V + +MI+ Y  N   + A+ L+
Sbjct: 111 HSDLYIETTLLNMYAACGDLKSARFLFER--MGHRNKVVWTSMISGYMKNHCPNEALLLY 168

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           + M  D   PD  T  +++SA A + ++    M++H  + +    +   + +AL+++Y K
Sbjct: 169 KKMEEDGFSPDEVTMATLVSACAEL-KDLGVGMKLHSHIREMDMKICAVLGSALVNMYAK 227

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C           +  AR+VFD++ ++D  +W+ ++ GYVKN   + + E L    E  G 
Sbjct: 228 CGD---------LKTARQVFDKLSDKDVYAWSALIFGYVKN---NRSTEALQLFREVAGG 275

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
           +                   ++ +E T  +VISACA  G    G+ VH Y+ RT+     
Sbjct: 276 S------------------NMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKG--- 314

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
             S+ +NN+L+ ++ KCG ++ A+ IF+ M  +DL+SWN++++ +               
Sbjct: 315 -HSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGF--------------- 358

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
                           A +G G E L  F  M+    +P +  F G +T+C+  G ++ G
Sbjct: 359 ----------------ALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEG 402

Query: 438 RQLHAQLVHSGYDSSLSAGN--ALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAAL 494
           ++L  + + + Y   L + +   ++ +  R G++  A      MP   D   W +M+ A 
Sbjct: 403 KKLFYE-IEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGAC 461

Query: 495 GQHGN 499
             + N
Sbjct: 462 RVYNN 466



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 166/345 (48%), Gaps = 16/345 (4%)

Query: 279 QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP--VNNALVTLYWKCGK 336
           +LD  T+ S++ A  NS + R   Q +  +L         F+ P  +    + L +K GK
Sbjct: 40  ELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGK 99

Query: 337 VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
           V   + +   M   DL     +L+ Y + G +  A+ LFE M  RN + WT MISG  +N
Sbjct: 100 VLHGQ-VVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKN 158

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
               E L L+ +M  +GF P +   A  +++CA L  L  G +LH+ +           G
Sbjct: 159 HCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLG 218

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML-KEGI 515
           +AL+ MYA+CG ++ A  VF+ + + D  +W+A+I    ++     A++L+ ++     +
Sbjct: 219 SALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNM 278

Query: 516 LPDRITFLTVLSACNHAGLVKEGR---RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
            P+ +T L V+SAC   G ++ GR    Y       + +          ID+  + G   
Sbjct: 279 RPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNS----LIDMFSKCGDID 334

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
            AK + DS+ +K     W +++ G  +HG   LG +A  Q F+LM
Sbjct: 335 AAKRIFDSMSYKDLIS-WNSMVNGFALHG---LGREALAQ-FRLM 374



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 116/250 (46%), Gaps = 13/250 (5%)

Query: 354 SWNAILSAYVSAGL--IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
           S N +++  +S G   +  A S+F   RE ++L+W  M+     +      L+ +++M L
Sbjct: 12  SLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEM-L 70

Query: 412 EGFK--PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
           E  +  P  + F   +  CA L   + G+ LH Q+V     S L     L+ MYA CG +
Sbjct: 71  ERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDL 130

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           ++A  +F  M + + V W +MI+   ++     A+ LY++M ++G  PD +T  T++SAC
Sbjct: 131 KSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSAC 190

Query: 530 ---NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
                 G+  +   +   M        G    +  +++  + G    A+ V D L  K  
Sbjct: 191 AELKDLGVGMKLHSHIREMDMKICAVLG----SALVNMYAKCGDLKTARQVFDKLSDK-D 245

Query: 587 APIWEALLAG 596
              W AL+ G
Sbjct: 246 VYAWSALIFG 255



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 26/199 (13%)

Query: 44  SGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPD----IVARTTLIAAYSASDNVKL 99
           S  +P E  I  +I    +   L   R + D I +      +    +LI  +S   ++  
Sbjct: 276 SNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDA 335

Query: 100 AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL 159
           A+ +F+    K  D + +N+M+  ++ +  G  A+  FR M+  D++PD  TF  VL+A 
Sbjct: 336 AKRIFDSMSYK--DLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTAC 393

Query: 160 ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK-----CVSSPFVSSRSLMGAAR 214
           +            H  +V+ G  LF  +  AL  V +K     C+    +    L+  AR
Sbjct: 394 S------------HAGLVQEGKKLFYEI-EALYGVRLKSEHYGCMVD-LLCRAGLLAEAR 439

Query: 215 RVFDEMP-ERDELSWTTMM 232
                MP + D   W +M+
Sbjct: 440 EFIRVMPLQPDGAIWGSML 458


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 246/674 (36%), Positives = 363/674 (53%), Gaps = 74/674 (10%)

Query: 120 MITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKS 179
           M+  YSH  +    + ++  M+   V+PD F +        LI       +  H  V+K 
Sbjct: 1   MLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYP------ILIKSAGTGGIGFHAHVLKL 54

Query: 180 GTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND 239
           G G    V NA+I +Y                 AR+V D         W  M++GY K +
Sbjct: 55  GHGSDAFVRNAVIDMY-----------------ARKVAD---------WNAMVSGYWKWE 88

Query: 240 YLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFR 299
               A+   D M E   + W A+++GY            ++ +         C       
Sbjct: 89  SEGQAQWLFDVMPERNVITWTAMVTGYA-----------KVKDLEAARRYFDC------- 130

Query: 300 LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM--PERDLVSWNA 357
                            PE S+   NA+++ Y + G   EA  +F++M    R+ V+WNA
Sbjct: 131 ----------------MPERSVVSWNAMLSGYAQNGLAEEALRLFDEMLGAYRNSVTWNA 174

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RLEGFKP 416
           ++SAY+  G +D A+ LF  M  RN+++W  MI+G AQNG     ++LF +M   +   P
Sbjct: 175 MISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTP 234

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
            +      I++C  LGALE G  +   L  +    S+S  NA+I MY+RCG +E A  VF
Sbjct: 235 DEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVF 294

Query: 477 NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536
             M   D VS+N +I+    HG+G  AI L   M + GI PDR+TF+ VL+AC+HAGL++
Sbjct: 295 QEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLE 354

Query: 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           EGR+ FE++       P  DHYA  +DLL R G+  +AK  ++ +P +P A ++ +LL  
Sbjct: 355 EGRKVFESIK-----DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNA 409

Query: 597 CRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEP 656
            RIH  ++LG  AA +LF+L P ++G ++LLSN+YA+ GRW D  R+R+ M+  GVKK  
Sbjct: 410 SRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTT 469

Query: 657 GCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKE 716
           G SW+E   K+H F+V D +H  +  +Y+ L +L  +MR+ GY+ D   VL D+E ++KE
Sbjct: 470 GWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKE 529

Query: 717 YALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRF 776
             + THSEKLA+ + L+    GA +RV+KNLR+C DCH A K +SK+ GR I+VRD  RF
Sbjct: 530 EIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRF 589

Query: 777 HHFRDGKCSCGDYW 790
           H F DG CSC DYW
Sbjct: 590 HCFNDGLCSCKDYW 603



 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 107/457 (23%), Positives = 187/457 (40%), Gaps = 123/457 (26%)

Query: 38  HAHMISSGFKPREHIINRLIDIYCKSL----KLV----------YARTLFDEIPQPDIVA 83
           HAH++  G      + N +ID+Y + +     +V           A+ LFD +P+ +++ 
Sbjct: 48  HAHVLKLGHGSDAFVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVIT 107

Query: 84  RTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD 143
            T ++  Y+   +++ AR  F+  P   R  V +NAM++ Y+ N     A+ LF +M   
Sbjct: 108 WTAMVTGYAKVKDLEAARRYFDCMP--ERSVVSWNAMLSGYAQNGLAEEALRLFDEML-- 163

Query: 144 DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
                                               G    +   NA+IS Y++      
Sbjct: 164 ------------------------------------GAYRNSVTWNAMISAYMRVGD--- 184

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
                 + +AR++F+ MP R+ ++W +M+ GY +N     A E    M            
Sbjct: 185 ------LDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEM------------ 226

Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
                    +   ++  DE T  SVISAC + G   LG  V  +L   + K     S+  
Sbjct: 227 ---------ITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIK----LSISG 273

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
           +NA++ +Y +CG + +A+ +F +M  RD+VS+N ++S                       
Sbjct: 274 HNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLIS----------------------- 310

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
                   G A +G+G E + L S M+  G +P    F G +T+C+  G LE GR++   
Sbjct: 311 --------GFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFES 362

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
           +     D ++     ++ +  R G +E A      MP
Sbjct: 363 I----KDPAIDHYACMVDLLGRVGELEDAKRTMERMP 395


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/576 (38%), Positives = 324/576 (56%), Gaps = 44/576 (7%)

Query: 224 DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRI----- 278
           D ++   ++  Y K    D AR   D MS    ++WN +I+GY H    +  L++     
Sbjct: 90  DTVTCNILINLYTKCGQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMH 149

Query: 279 ----QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
               Q+ EFT +S + ACA        KQ+H   ++  A  +  F   V  A + +Y KC
Sbjct: 150 REGTQMTEFTLSSTLCACAAKYAIIECKQLHTIAIKL-ALDSSSF---VGTAFLDVYAKC 205

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
             + +A              W                  +FE M E+  ++W+ + +G  
Sbjct: 206 NMIKDA-------------CW------------------VFENMPEKTSVTWSSLFAGFV 234

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
           QNG  EE L LF   + EG +  ++  +  +++CA L  +  G Q+HA +V  G+  +L 
Sbjct: 235 QNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLF 294

Query: 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
              +L+ +YA+CG +E +  VF  M   + V WNAMIA+  +H +   A+ L+E+M + G
Sbjct: 295 VATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVG 354

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
           I P+ +T+L++LSAC+H GLV+EGR YF  +       P   HY+  +D+L R+GK  EA
Sbjct: 355 IFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDEA 414

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL 634
             ++D +PF+P+A +W +LL   RIH NI L   AAEQLF+L P + G +VLLSN+YA  
Sbjct: 415 WKLLDKMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLLSNVYAAS 474

Query: 635 GRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEM 694
           G W++    RK +RD G KKE G SWIE   K+HVF+  +  HP    VY  LE++  EM
Sbjct: 475 GNWENVVVARKYLRDSGAKKEMGRSWIEAKGKIHVFVAGEREHPGITDVYNKLEEIYHEM 534

Query: 695 RKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCH 754
           RK+ +  +T+  LHD+ +DQKE  L  HSEKLA AFGL+ LP    + + KNLRICGDCH
Sbjct: 535 RKISHRANTQCDLHDVHADQKEELLKHHSEKLAFAFGLISLPPNIPITIYKNLRICGDCH 594

Query: 755 NAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +  K +S +  R+++VRD  RFHHF+DG CSCGD+W
Sbjct: 595 SFMKIVSCITERQVIVRDINRFHHFKDGSCSCGDFW 630



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 112/438 (25%), Positives = 197/438 (44%), Gaps = 77/438 (17%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D V    LI  Y+       AR +F+   + +R  + +N MI  Y+HN     A++LF  
Sbjct: 90  DTVTCNILINLYTKCGQNDCARRVFD--AMSVRSIISWNTMIAGYTHNREDVEALKLFSR 147

Query: 140 MRRDDVKPDNFTFTSVLSALA---LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           M R+  +   FT +S L A A    I+E    C Q+H   +K      + V  A + VY 
Sbjct: 148 MHREGTQMTEFTLSSTLCACAAKYAIIE----CKQLHTIAIKLALDSSSFVGTAFLDVYA 203

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           KC         +++  A  VF+ MPE+  ++W+++  G+V+N           G+ E V 
Sbjct: 204 KC---------NMIKDACWVFENMPEKTSVTWSSLFAGFVQN-----------GLHEEVL 243

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
             + +       RE       +QL EFT +S++S CA+  L   G QVHA ++    K  
Sbjct: 244 CLFQS-----TQRE------GMQLTEFTVSSILSTCASLALIIEGTQVHAVIV----KHG 288

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
              +L V  +LV +Y KCG++ ++ ++F  M E+++V WNA+++++              
Sbjct: 289 FHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASF-------------- 334

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
               R+  SW  MI              LF +M+  G  P +  +   +++C+  G +E 
Sbjct: 335 ---SRHAHSWEAMI--------------LFEKMQQVGIFPNEVTYLSILSACSHTGLVEE 377

Query: 437 GRQ-LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAAL 494
           GR   +  L     + ++   + ++ +  R G  + A  + + MP   + S W +++ + 
Sbjct: 378 GRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKMPFEPTASMWGSLLGSS 437

Query: 495 GQHGNGARAIELYEQMLK 512
             H N   A    EQ+ +
Sbjct: 438 RIHKNIRLARIAAEQLFR 455



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 2/169 (1%)

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
           CA   +L  G+  H   +H G  +     N LI +Y +CG  + A  VF+ M     +SW
Sbjct: 66  CAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVFDAMSVRSIISW 125

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
           N MIA    +     A++L+ +M +EG      T  + L AC     + E ++   T+  
Sbjct: 126 NTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAIIECKQ-LHTIAI 184

Query: 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
              +         F+D+  +     +A  V +++P K S   W +L AG
Sbjct: 185 KLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVT-WSSLFAG 232


>gi|224140235|ref|XP_002323489.1| predicted protein [Populus trichocarpa]
 gi|222868119|gb|EEF05250.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 253/767 (32%), Positives = 393/767 (51%), Gaps = 89/767 (11%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           VHA  I  G+     + N LI +Y K   L +A  LFDE+PQ DI +             
Sbjct: 225 VHALAIKLGYSQLVFVANALIGLYGKCGCLDHAIHLFDEMPQRDIAS------------- 271

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD-VKPDNFTFTSV 155
                               +N MI++     +   A+ELFR + ++   K D FT +++
Sbjct: 272 --------------------WNTMISSLVKGLSYEKALELFRVLNQNKGFKADQFTLSTL 311

Query: 156 LSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARR 215
           L+A A       Q  ++H   ++ G     SV NA+I  Y +C S   V++         
Sbjct: 312 LTACAR-CHARIQGREIHAYAIRIGLENNLSVSNAIIGFYTRCGSLNHVAA--------- 361

Query: 216 VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE--LKM 273
           +F+ MP RD ++WT M+T Y++   +D A +  + M E   V++NAL++G+      LK 
Sbjct: 362 LFERMPVRDIITWTEMITAYMEFGLVDLAVDMFNKMPEKNSVSYNALLTGFCKNNEGLKA 421

Query: 274 LMLRI-------QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
           L L +       +L +FT T VI+AC       + +Q+H ++++   +        +  A
Sbjct: 422 LNLFVRMVQEGAELTDFTLTGVINACGLLLKLEISRQIHGFIIKFGFRSNA----CIEAA 477

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           L+ +  KCG++++A  +F  +                     D   S+ +          
Sbjct: 478 LIDMCSKCGRMDDADRMFQSLST-------------------DGGNSIIQ---------- 508

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD-YAFAGAITSCAGLGALENGRQLHAQLV 445
           T MI G A+NG  EE + LF + + EG    D  AF   +  C  LG  E G+Q+H Q +
Sbjct: 509 TSMICGYARNGLPEEAICLFYRCQSEGTMVLDEVAFTSILGVCGTLGFHEVGKQIHCQAL 568

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIE 505
            +G+ + L  GN++I+MY++C  ++ A   FNTMP  D VSWN +IA    H  G  A+ 
Sbjct: 569 KTGFHAELGVGNSIISMYSKCYNIDDAIKAFNTMPGHDVVSWNGLIAGQLLHRQGDEALA 628

Query: 506 LYEQMLKEGILPDRITFLTVLSA--CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563
           ++  M K GI PD ITF+ ++SA     + L+ E R  F +M   + + P  +HYA  + 
Sbjct: 629 IWSSMEKAGIKPDAITFVLIVSAYKFTSSNLLDECRSLFLSMKMIHDLEPTSEHYASLVG 688

Query: 564 LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623
           +L   G   EA+++I+ +PF P   +W ALL GCR+H N  +G + A+ +  + P    T
Sbjct: 689 VLGYWGLLEEAEELINKMPFDPEVSVWRALLDGCRLHANTSIGKRVAKHIIGMEPRDPST 748

Query: 624 YVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAV 683
           YVL+SN+YA  GRW  +  VR+ MRDRG++K P  SW+ +  ++H F   D +HP++  +
Sbjct: 749 YVLVSNLYAASGRWHCSEMVRENMRDRGLRKHPCRSWVIIKKQLHTFYARDKSHPQSNDI 808

Query: 684 YKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRV 743
           Y  L+ L+L+  K GY PD  FVL ++E  QK+  L  HS KLA  +GL+K   G  +RV
Sbjct: 809 YSGLDILILKCLKAGYEPDMSFVLQEVEEQQKKDFLFYHSAKLAATYGLLKTRPGEPIRV 868

Query: 744 LKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +KN+ +C DCH   K+ + V  REI+ RD   FH F +G+CSC  YW
Sbjct: 869 VKNILLCRDCHTFLKYATVVTQREIIFRDASGFHCFSNGQCSCKGYW 915



 Score =  224 bits (572), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 156/555 (28%), Positives = 273/555 (49%), Gaps = 55/555 (9%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           +IAAY     V  A E+F    +   D V Y+A+I+++S  +    AI+LF  MR   ++
Sbjct: 143 VIAAYIKLGLVVDAYEVF--MGMSTPDVVSYSALISSFSKLNRETEAIQLFFRMRISGIE 200

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           P+ ++F ++L+A    +E E   +Q+H   +K G      V NALI +Y KC        
Sbjct: 201 PNEYSFVAILTACIRSLELEMG-LQVHALAIKLGYSQLVFVANALIGLYGKC-------- 251

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              +  A  +FDEMP+RD  SW TM++  VK    + A E    +++N G          
Sbjct: 252 -GCLDHAIHLFDEMPQRDIASWNTMISSLVKGLSYEKALELFRVLNQNKG---------- 300

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                       + D+FT +++++ACA       G+++HAY +R       E +L V+NA
Sbjct: 301 -----------FKADQFTLSTLLTACARCHARIQGREIHAYAIRIGL----ENNLSVSNA 345

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           ++  Y +CG +N    +F +MP RD+++W  +++AY+  GL+D A  +F  M E+N +S+
Sbjct: 346 IIGFYTRCGSLNHVAALFERMPVRDIITWTEMITAYMEFGLVDLAVDMFNKMPEKNSVSY 405

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
             +++G  +N  G + L LF +M  EG +  D+   G I +C  L  LE  RQ+H  ++ 
Sbjct: 406 NALLTGFCKNNEGLKALNLFVRMVQEGAELTDFTLTGVINACGLLLKLEISRQIHGFIIK 465

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--VDSVSWNAMIAALGQHGNGARAI 504
            G+ S+     ALI M ++CG ++ A+ +F ++     +S+   +MI    ++G    AI
Sbjct: 466 FGFRSNACIEAALIDMCSKCGRMDDADRMFQSLSTDGGNSIIQTSMICGYARNGLPEEAI 525

Query: 505 ELYEQMLKEG-ILPDRITFLTVLSACNHAGLVKEGRRYF-----ETMHGPYGIPPGEDHY 558
            L+ +   EG ++ D + F ++L  C   G  + G++          H   G+       
Sbjct: 526 CLFYRCQSEGTMVLDEVAFTSILGVCGTLGFHEVGKQIHCQALKTGFHAELGVGNS---- 581

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH--GNIDLGIQAAEQLFQL 616
              I +  +     +A    +++P       W  L+AG  +H  G+  L I ++ +   +
Sbjct: 582 --IISMYSKCYNIDDAIKAFNTMPGHDVVS-WNGLIAGQLLHRQGDEALAIWSSMEKAGI 638

Query: 617 MPHHAGTYVLLSNMY 631
            P  A T+VL+ + Y
Sbjct: 639 KP-DAITFVLIVSAY 652



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 116/437 (26%), Positives = 201/437 (45%), Gaps = 51/437 (11%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R +HA+ I  G +    + N +I  Y +   L +   LF+ +P  DI+  T +I AY  
Sbjct: 324 GREIHAYAIRIGLENNLSVSNAIIGFYTRCGSLNHVAALFERMPVRDIITWTEMITAYME 383

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
              V LA +MFNK P K  ++V YNA++T +  N+ G  A+ LF  M ++  +  +FT T
Sbjct: 384 FGLVDLAVDMFNKMPEK--NSVSYNALLTGFCKNNEGLKALNLFVRMVQEGAELTDFTLT 441

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
            V++A  L+++ E    Q+H  ++K G      +  ALI +  KC           M  A
Sbjct: 442 GVINACGLLLKLEIS-RQIHGFIIKFGFRSNACIEAALIDMCSKC---------GRMDDA 491

Query: 214 RRVFDEMPER--DELSWTTMMTGYVKNDYLDAAR-EFLDGMSENVGVAWNALISGYVHRE 270
            R+F  +     + +  T+M+ GY +N   + A   F    SE   V             
Sbjct: 492 DRMFQSLSTDGGNSIIQTSMICGYARNGLPEEAICLFYRCQSEGTMV------------- 538

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
                    LDE  +TS++  C   G   +GKQ+H   L+T         L V N+++++
Sbjct: 539 ---------LDEVAFTSILGVCGTLGFHEVGKQIHCQALKTGFHA----ELGVGNSIISM 585

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL----LSW 386
           Y KC  +++A   FN MP  D+VSWN +++  +     DEA +++ +M +  +    +++
Sbjct: 586 YSKCYNIDDAIKAFNTMPGHDVVSWNGLIAGQLLHRQGDEALAIWSSMEKAGIKPDAITF 645

Query: 387 TVMISG--LAQNGYGEEGLKLFSQMRL-EGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
            +++S      +   +E   LF  M++    +P    +A  +      G LE   +L  +
Sbjct: 646 VLIVSAYKFTSSNLLDECRSLFLSMKMIHDLEPTSEHYASLVGVLGYWGLLEEAEELINK 705

Query: 444 LVHSGYDSSLSAGNALI 460
           +    +D  +S   AL+
Sbjct: 706 M---PFDPEVSVWRALL 719



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 136/268 (50%), Gaps = 15/268 (5%)

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           NA+++AY+  GL+ +A  +F  M   +++S++ +IS  ++     E ++LF +MR+ G +
Sbjct: 141 NAVIAAYIKLGLVVDAYEVFMGMSTPDVVSYSALISSFSKLNRETEAIQLFFRMRISGIE 200

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P +Y+F   +T+C     LE G Q+HA  +  GY   +   NALI +Y +CG ++ A  +
Sbjct: 201 PNEYSFVAILTACIRSLELEMGLQVHALAIKLGYSQLVFVANALIGLYGKCGCLDHAIHL 260

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK-EGILPDRITFLTVLSACNHAGL 534
           F+ MP  D  SWN MI++L +  +  +A+EL+  + + +G   D+ T  T+L+AC     
Sbjct: 261 FDEMPQRDIASWNTMISSLVKGLSYEKALELFRVLNQNKGFKADQFTLSTLLTACARCHA 320

Query: 535 VKEGRRYFETMHGPYGIPPGEDHYAR----FIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590
             +GR     +H  Y I  G ++        I    R G  +    + + +P +     W
Sbjct: 321 RIQGRE----IHA-YAIRIGLENNLSVSNAIIGFYTRCGSLNHVAALFERMPVR-DIITW 374

Query: 591 EALLAGCRIHGNIDLGIQAAEQLFQLMP 618
             ++      G +DL +     +F  MP
Sbjct: 375 TEMITAYMEFGLVDLAV----DMFNKMP 398



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 2/93 (2%)

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
            R LHA ++  G D+ L  GNA+I  Y + G+V  A  VF  M   D VS++A+I++  +
Sbjct: 123 ARALHASILKLGEDTHL--GNAVIAAYIKLGLVVDAYEVFMGMSTPDVVSYSALISSFSK 180

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
                 AI+L+ +M   GI P+  +F+ +L+AC
Sbjct: 181 LNRETEAIQLFFRMRISGIEPNEYSFVAILTAC 213


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 262/805 (32%), Positives = 409/805 (50%), Gaps = 80/805 (9%)

Query: 17  ASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHII--NRLIDIYCKSLKLVYARTLFD 74
           A QLQ C  R        R+VH H++  G   R  +   N L+++Y K   L  AR LFD
Sbjct: 63  ARQLQGCIARGDARG--GRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFD 120

Query: 75  EIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAI 134
            +P+ ++V+  TL+ A++   + +                                 AA 
Sbjct: 121 RMPERNMVSFVTLVQAHAQRGDFE---------------------------------AAA 147

Query: 135 ELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
            LFR +R +  + + F  T++L  LA+ ++       +H    K G      V + LI  
Sbjct: 148 ALFRRLRWEGHEVNQFVLTTMLK-LAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDA 206

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND--------------- 239
           Y  C         SL+  A  VF+ +  +D + WT M++ Y +ND               
Sbjct: 207 YSLC---------SLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRCAQSCSLL 257

Query: 240 YLDAAREFLDG-----MSENVGVAWNALISGYVH----RELKMLMLRIQLDEFTYTS-VI 289
            +  AR+ + G     +++       AL+  Y      ++ ++    I  D+    S +I
Sbjct: 258 AISCARQGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMI 317

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM-- 347
           S  A S       ++   L+R+   P  E+SL   ++++       +++  + I N    
Sbjct: 318 SRYAQSNQNEQAFELFLRLMRSSVLPN-EYSL---SSVLQACTNMVQLDFGKQIHNHAIK 373

Query: 348 --PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKL 405
              E DL   NA++  Y     +D +  +F ++R+ N +SW  ++ G +Q+G GEE L +
Sbjct: 374 IGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSV 433

Query: 406 FSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465
           F +M+          ++  + +CA   ++ +  Q+H  +  S +++    GN+LI  YA+
Sbjct: 434 FCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAK 493

Query: 466 CGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTV 525
           CG +  A  VF  +   D +SWNA+I+    HG  A A+EL+++M K  +  + ITF+ +
Sbjct: 494 CGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVAL 553

Query: 526 LSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP 585
           LS C   GLV  G   F++M   +GI P  +HY   + LL RAG+ ++A   I  +P  P
Sbjct: 554 LSVCCSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAP 613

Query: 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645
           SA +W ALL+ C IH N+ LG  +AE++ ++ P    TYVLLSNMYA  G  D  A +RK
Sbjct: 614 SAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRK 673

Query: 646 LMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKF 705
            MR+ GV+K PG SW+E+  ++H F V    HP+ + +   LE L L+  + GY+PD   
Sbjct: 674 SMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINV 733

Query: 706 VLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVG 765
           VLHD++ +QK   L  HSE+LA+A+GL+  P G  +R+LKNLR C DCH AF  +SK+V 
Sbjct: 734 VLHDVDKEQKTRMLWVHSERLALAYGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVK 793

Query: 766 REIVVRDGKRFHHFRDGKCSCGDYW 790
           REI+VRD  RFHHF DGKCSCGDYW
Sbjct: 794 REIIVRDINRFHHFEDGKCSCGDYW 818



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 129/303 (42%), Gaps = 53/303 (17%)

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
           +D F     +  C   G  R G+ VH +++R          L   N L+ +Y K G +  
Sbjct: 57  VDSFACARQLQGCIARGDARGGRAVHGHVVRRGG--VGRLDLFCANVLLNMYGKLGPLAS 114

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR----ERNLLSWTVMI----- 390
           AR +F++MPER++VS+  ++ A+   G  + A +LF  +R    E N    T M+     
Sbjct: 115 ARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIA 174

Query: 391 ---SGLAQNGY------GEEGLKLFSQMRLEGFKPC------DYAFAG----------AI 425
              +GLA   +      G +         ++ +  C      ++ F G          A+
Sbjct: 175 MDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAM 234

Query: 426 TSC----------------AGLGALENGRQ-LHAQLVHSGYDSSLSAGNALITMYARCGV 468
            SC                  L A+   RQ +H   + +  D+    G AL+ MYA+CG 
Sbjct: 235 VSCYSENDCPENAFRCAQSCSLLAISCARQGIHGCAIKTLNDTEPHVGGALLDMYAKCGD 294

Query: 469 VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
           ++ A   F  +P  D +  + MI+   Q     +A EL+ ++++  +LP+  +  +VL A
Sbjct: 295 IKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQA 354

Query: 529 CNH 531
           C +
Sbjct: 355 CTN 357



 Score = 44.7 bits (104), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 7/149 (4%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y+S L+ C     I    A  +H  +  S F     I N LID Y K   +  A  +F  
Sbjct: 449 YSSVLRACASTASIRH--AGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQH 506

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMF---NKTPLKMRDTVFYNAMITAYSHNSNGHA 132
           + + DI++   +I+ Y+       A E+F   NK+ ++  D  F   +    S     H 
Sbjct: 507 LMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNH- 565

Query: 133 AIELFRDMRRD-DVKPDNFTFTSVLSALA 160
            + LF  MR D  +KP    +T ++  L 
Sbjct: 566 GLSLFDSMRIDHGIKPSMEHYTCIVRLLG 594


>gi|48475086|gb|AAT44155.1| hypothetical protein, contains pentrtricopeptide (PPR) repeat
           [Oryza sativa Japonica Group]
 gi|125568883|gb|EAZ10398.1| hypothetical protein OsJ_00231 [Oryza sativa Japonica Group]
          Length = 836

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 244/733 (33%), Positives = 373/733 (50%), Gaps = 69/733 (9%)

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ 171
           +D V +N  +   +       AI +FR+M+   V  D +T   VL A        ++   
Sbjct: 119 KDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPADGYTCARVLHACGR-AGALREGRA 177

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H   +K        V   L  +Y +          + + AA RV D M     + W  +
Sbjct: 178 VHAYALKLALDAHPLVPGFLAGMYAE---------NADVAAATRVLDAMGAGSVVPWNAV 228

Query: 232 MT-----GYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH----REL-----KMLMLR 277
           +      G V +    AAR    G   NV   WN ++SG       RE       ML   
Sbjct: 229 VACCARLGLVDDALELAARMSRSGPEPNVAT-WNTVLSGCSRHGRDREALGVVASMLKQG 287

Query: 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
           ++ D  T +S++ + AN+GL R G ++H + LR + +P     +    ALV +Y KCG++
Sbjct: 288 LRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEP----DVYTGTALVDMYAKCGRL 343

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER---------------- 381
           + A+ + + +  R+L +WN++++ Y +AG  D A  L E M++                 
Sbjct: 344 DCAQKVLDALEHRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGY 403

Query: 382 -----------------------NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
                                  N++SWT +ISG   NG  E+      +M+ +G +P  
Sbjct: 404 SMNGQSSQAVLLLRQIKAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSL 463

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478
              +  + +CAGL   + G++LH   +   YD  +    ALI MY++ G + +A  +F +
Sbjct: 464 VTMSVLLRACAGLALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFES 523

Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG 538
           +   + V  NAM+  L  HG G  AIEL+  M   G+ PD ITF  +L+AC   GLV EG
Sbjct: 524 IQQKNLVLCNAMLTGLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEG 583

Query: 539 RRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCR 598
             YF++M   YG+ P  ++YA  +DLL R G   EA D I+  P  P A  W ALL GC 
Sbjct: 584 WEYFDSMETKYGVKPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCS 643

Query: 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGC 658
           IHGN+ L   AA  LF L P+++  Y+L+ N+Y     +D+A  ++  M+ RGV   PG 
Sbjct: 644 IHGNLALAEVAARNLFILEPYNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGW 703

Query: 659 SWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYA 718
           SWI+++  +HVF VD   HPE   +Y+ L +LV +++K GYVPDT  + ++++ ++KE  
Sbjct: 704 SWIQIEQGIHVFEVDGKPHPETAEIYEELIRLVFQIKKAGYVPDTSCIAYNVQEEEKEKL 763

Query: 719 LSTHSEKLAVAFGLMKLPGG-ATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFH 777
           L  H+EKLA+ +GL++     A VRV+KN R+C DCH   K +S +  R+I++RD  RFH
Sbjct: 764 LLGHTEKLAITYGLIRSDASRAPVRVMKNTRMCNDCHEVAKHISSLCDRQIILRDAVRFH 823

Query: 778 HFRDGKCSCGDYW 790
           HF DGKCSC DYW
Sbjct: 824 HFVDGKCSCNDYW 836



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 116/277 (41%), Gaps = 37/277 (13%)

Query: 371 AKSLFEAMRE--RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
           A+ L EA  +  ++ + W   ++ LA+    +E + +F +M+  G     Y  A  + +C
Sbjct: 107 ARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPADGYTCARVLHAC 166

Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
              GAL  GR +HA  +    D+       L  MYA    V AA  V + M     V WN
Sbjct: 167 GRAGALREGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWN 226

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG-----------LVKE 537
           A++A   + G    A+EL  +M + G  P+  T+ TVLS C+  G           ++K+
Sbjct: 227 AVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQ 286

Query: 538 GRRYFETM---------------HG--------PYGIPPGEDHYARFIDLLCRAGKFSEA 574
           G R   T                HG           + P        +D+  + G+   A
Sbjct: 287 GLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCA 346

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611
           + V+D+L  + +   W +L+AG    G  D+ ++  E
Sbjct: 347 QKVLDALEHR-NLTTWNSLVAGYANAGRFDIALELVE 382



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 148/342 (43%), Gaps = 31/342 (9%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           +H   + +  +P  +    L+D+Y K  +L  A+ + D +   ++    +L+A Y+ +  
Sbjct: 314 IHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAGR 373

Query: 97  VKLAREMFN--KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
             +A E+    K      D   +N +IT YS N     A+ L R ++   V P+  ++TS
Sbjct: 374 FDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSWTS 433

Query: 155 VLSALALIVEEEKQ---CMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           ++S      E E     C +M    V+      + +L A   + ++              
Sbjct: 434 LISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCF----- 488

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY-VHRE 270
           A RR +D     D +  T ++  Y K   L +A+   + + +   V  NA+++G  VH +
Sbjct: 489 ALRRAYD----CDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQ 544

Query: 271 LK--------MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL-LRTEAKPTPEFSL 321
            +        M    ++ D  T+T++++AC + GL   G +    +  +   KPT E   
Sbjct: 545 GREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVKPTTE--- 601

Query: 322 PVNNA-LVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
             N A +V L  +CG ++EA D   + P +     W A+L+ 
Sbjct: 602 --NYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTG 641


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/582 (37%), Positives = 341/582 (58%), Gaps = 67/582 (11%)

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           N+LI +Y KC S         +  A +VFD+M  +D +SWT+++ GY +ND    A   L
Sbjct: 90  NSLIHLYCKCGS---------VVEAHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLL 140

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
            GM                      L  R + + FT+ S++ A        +G Q+HA  
Sbjct: 141 PGM----------------------LKGRFKPNGFTFASLLKAVGAYADSGIGGQIHALA 178

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
           ++ +        + V +AL+ +Y +CGK                               +
Sbjct: 179 VKCDWHE----DVYVGSALLDMYARCGK-------------------------------M 203

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
           D A ++F+ +  +N +SW  +ISG A+ G GE  L +F++M+  GF+   + ++   ++ 
Sbjct: 204 DMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSAL 263

Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
           AG+GALE G+ +HA ++ S    +   GN ++ MYA+ G +  A  VF  + N D V+WN
Sbjct: 264 AGIGALEQGKWVHAHMIKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWN 323

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP 548
           +M+ A  Q+G G  A+  +E+M K GI  ++I+FL +L+AC+H GLVKEG+ YF+ M   
Sbjct: 324 SMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQISFLCILTACSHGGLVKEGKHYFD-MIKE 382

Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
           Y + P  +HY   +DLL RAG  + A   I  +P +P+A +W ALLA CR+H N  +G  
Sbjct: 383 YNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQF 442

Query: 609 AAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVH 668
           AA+ +FQL P  +G  VLL N+YA+ G WD AARVRK+M+  GVKKEP CSW+E++N VH
Sbjct: 443 AADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIENSVH 502

Query: 669 VFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAV 728
           +F+ +D  HP A+ +YK  +++ +++RK GYVPD  +VL  ++  ++E  L  HSEK+A+
Sbjct: 503 MFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDYVLLHVDEQEREANLQYHSEKIAL 562

Query: 729 AFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVV 770
           AF L+++P GAT+R++KN+RICGDCH+AFK++SKV  REIV+
Sbjct: 563 AFALIQMPAGATIRIMKNIRICGDCHSAFKYISKVFEREIVI 604



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 171/387 (44%), Gaps = 73/387 (18%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           AR +HAH+ SS F     + N LI +YCK   +V A  +FD+                  
Sbjct: 70  ARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDK------------------ 111

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                          ++ +D V + ++I  Y+ N     AI L   M +   KP+ FTF 
Sbjct: 112 ---------------MRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFA 156

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           S+L A+    +      Q+H   VK        V +AL+ +Y +C           M  A
Sbjct: 157 SLLKAVGAYADSGIGG-QIHALAVKCDWHEDVYVGSALLDMYARC---------GKMDMA 206

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
             VFD++  ++ +SW  +++G+ +    + A      M  N          G+       
Sbjct: 207 TAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRN----------GF------- 249

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
                +   FTY+S+ SA A  G    GK VHA+++++  K T      V N ++ +Y K
Sbjct: 250 -----EATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAF----VGNTMLDMYAK 300

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER----NLLSWTVM 389
            G + +AR +F ++  +DLV+WN++L+A+   GL  EA S FE MR+     N +S+  +
Sbjct: 301 SGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQISFLCI 360

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKP 416
           ++  +  G  +EG   F  ++    +P
Sbjct: 361 LTACSHGGLVKEGKHYFDMIKEYNLEP 387



 Score =  122 bits (307), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 120/237 (50%), Gaps = 8/237 (3%)

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER----DLVSWNAILSAY 362
           +L   E  PTP     V +A +T   +   +++AR I   +       D    N+++  Y
Sbjct: 41  HLDSGELAPTPR----VYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLY 96

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
              G + EA  +F+ MR ++++SWT +I+G AQN    E + L   M    FKP  + FA
Sbjct: 97  CKCGSVVEAHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFA 156

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
             + +         G Q+HA  V   +   +  G+AL+ MYARCG ++ A  VF+ + + 
Sbjct: 157 SLLKAVGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSK 216

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
           + VSWNA+I+   + G+G  A+ ++ +M + G      T+ ++ SA    G +++G+
Sbjct: 217 NGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGK 273



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 135/283 (47%), Gaps = 39/283 (13%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+   + L+  Y+    + +A  +F+K  L  ++ V +NA+I+ ++   +G  A+ +F +
Sbjct: 186 DVYVGSALLDMYARCGKMDMATAVFDK--LDSKNGVSWNALISGFARKGDGETALMVFAE 243

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M+R+  +  +FT++S+ SALA I   E Q   +H  ++KS   L   V N ++ +Y K  
Sbjct: 244 MQRNGFEATHFTYSSIFSALAGIGALE-QGKWVHAHMIKSRQKLTAFVGNTMLDMYAKSG 302

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
           S         M  AR+VF+ +  +D ++W +M+T + +      A    + M +      
Sbjct: 303 S---------MIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRK------ 347

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
               SG            I L++ ++  +++AC++ GL + GK  H + +  E    PE 
Sbjct: 348 ----SG------------IYLNQISFLCILTACSHGGLVKEGK--HYFDMIKEYNLEPEI 389

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
              V   +V L  + G +N A     +MP E     W A+L+A
Sbjct: 390 EHYVT--VVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAA 430


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/621 (38%), Positives = 335/621 (53%), Gaps = 67/621 (10%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           Q+H  ++ SG G  T +   L+ +Y  C          L+G ARR+FD MP+R+   W  
Sbjct: 83  QLHGRLLVSGLGPDTVLATKLVDLYAAC---------GLVGHARRLFDGMPKRNVFLWNV 133

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++  Y ++   + A +   GM +                        ++ D FTY   + 
Sbjct: 134 LIRAYARDGPHEVAIQLYRGMVD----------------------YGVEPDNFTYPLALK 171

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           ACA       G++VH  +L T         + V   LV +Y KCG V++AR +F+++  R
Sbjct: 172 ACAALLDLETGREVHERVLGTHWGE----DMFVCAGLVDMYAKCGCVDDARAVFDRIRVR 227

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           D V WN++++AY                                QNG   E L L   M 
Sbjct: 228 DSVVWNSMIAAY-------------------------------GQNGRPMEALSLCRDMA 256

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
             G  P        I++ A   AL  GR+LH      G+D       +L+ MYA+ G V+
Sbjct: 257 ANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLKTSLVDMYAKSGWVQ 316

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG-ILPDRITFLTVLSAC 529
            A  +F  +   + VSWNAMI   G HG+   A++L+ +M  E  + PD ITF+ VLSAC
Sbjct: 317 VARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNITFVGVLSAC 376

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
           NH G+VKE + +F  M   Y I P   H+   +D+L  AG+F EA D+I  +P +P + I
Sbjct: 377 NHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIKGMPMQPDSGI 436

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
           W ALL GC+IH N++LG  A ++L +L P  AG YVLLSN+YA  G+W+ AARVRKLM +
Sbjct: 437 WGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLSNIYAQSGKWEKAARVRKLMTN 496

Query: 650 RGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHD 709
           RG+KK  GCSWIE+  K H FLV D +HP +  +Y+ LE+L   M   GY+PDT  V HD
Sbjct: 497 RGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIYEELERLEGLMSDAGYMPDTMPVFHD 556

Query: 710 MESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIV 769
           +  D+K   + +HSE+LA+AFGL+  P G  + V KNLR+C DCH   K +S++V REI+
Sbjct: 557 VGDDEKRNMMRSHSERLAIAFGLISTPSGTKLLVTKNLRVCEDCHVVIKLISQIVQREII 616

Query: 770 VRDGKRFHHFRDGKCSCGDYW 790
           +RD  R+HHF +G+CSC DYW
Sbjct: 617 IRDVNRYHHFVNGECSCKDYW 637



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 161/339 (47%), Gaps = 53/339 (15%)

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           YTSV+ +C  S     G+Q+H  LL +   P    +      LV LY  CG V  AR +F
Sbjct: 65  YTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLA----TKLVDLYAACGLVGHARRLF 120

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           + MP+R++  WN ++ AY                               A++G  E  ++
Sbjct: 121 DGMPKRNVFLWNVLIRAY-------------------------------ARDGPHEVAIQ 149

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV--HSGYDSSLSAGNALITM 462
           L+  M   G +P ++ +  A+ +CA L  LE GR++H +++  H G D  + AG  L+ M
Sbjct: 150 LYRGMVDYGVEPDNFTYPLALKACAALLDLETGREVHERVLGTHWGEDMFVCAG--LVDM 207

Query: 463 YARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF 522
           YA+CG V+ A  VF+ +   DSV WN+MIAA GQ+G    A+ L   M   G+ P   T 
Sbjct: 208 YAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGRPMEALSLCRDMAANGVGPTIATL 267

Query: 523 LTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR----FIDLLCRAGKFSEAKDVI 578
           ++ +SA   A  +  GR     +HG +G   G D   +     +D+  ++G    A+ + 
Sbjct: 268 VSTISAAADAAALPRGRE----LHG-FGWRRGFDRQDKLKTSLVDMYAKSGWVQVARVLF 322

Query: 579 DSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           + L  K     W A++ G  +HG+ D     A +LF  M
Sbjct: 323 EQL-MKRELVSWNAMICGYGMHGHFD----EALKLFNKM 356



 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 124/506 (24%), Positives = 202/506 (39%), Gaps = 111/506 (21%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF 73
           + Y S LQ C     + +   R +H  ++ SG  P   +  +L+D+Y     + +AR LF
Sbjct: 63  HHYTSVLQSCVASRSLGT--GRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLF 120

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
           D +P+                                 R+   +N +I AY+ +     A
Sbjct: 121 DGMPK---------------------------------RNVFLWNVLIRAYARDGPHEVA 147

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
           I+L+R M    V+PDNFT+   L A A +++ E    ++H  V+ +  G    V   L+ 
Sbjct: 148 IQLYRGMVDYGVEPDNFTYPLALKACAALLDLETG-REVHERVLGTHWGEDMFVCAGLVD 206

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
           +Y KC           +  AR VFD +  RD + W +M+  Y +N     A      M+ 
Sbjct: 207 MYAKC---------GCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGRPMEALSLCRDMAA 257

Query: 254 N-VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
           N VG     L+                       S ISA A++     G+++H +  R  
Sbjct: 258 NGVGPTIATLV-----------------------STISAAADAAALPRGRELHGFGWRRG 294

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
                +    +  +LV +Y K G V  AR +F Q+ +R+LVSWNA++  Y   G  DEA 
Sbjct: 295 FDRQDK----LKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEA- 349

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG-FKPCDYAFAGAITSCAGL 431
                                         LKLF++MR+E    P +  F G +++C   
Sbjct: 350 ------------------------------LKLFNKMRVEAQVTPDNITFVGVLSACNHG 379

Query: 432 GALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNA 489
           G ++  ++    +V       ++     L+ +    G  E A  +   MP   DS  W A
Sbjct: 380 GMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIKGMPMQPDSGIWGA 439

Query: 490 MIAALGQHGNGARAIELYEQMLKEGI 515
           ++     H N    +EL E  L++ I
Sbjct: 440 LLNGCKIHKN----VELGELALQKLI 461


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 244/736 (33%), Positives = 383/736 (52%), Gaps = 87/736 (11%)

Query: 65  KLVYARTL--FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
           ++V+AR +   D  P P +     LI  YS  D+ + AR +   TP   R+ V + ++I+
Sbjct: 26  RVVHARIVKTLDSPPPPFLA--NYLINMYSKLDHPESARLVLRLTP--ARNVVSWTSLIS 81

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTG 182
             + N +   A+  F +MRR+ V P++FTF     A+A +        Q+H   VK G  
Sbjct: 82  GLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASL-RLPVTGKQIHALAVKCGR- 139

Query: 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKN---- 238
                   ++ V+V C +        L   AR++FDE+PER+  +W   ++  V +    
Sbjct: 140 --------ILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPR 191

Query: 239 DYLDAAREF--LDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSG 296
           + ++A  EF  +DG   ++                            T+ + ++AC++  
Sbjct: 192 EAIEAFIEFRRIDGHPNSI----------------------------TFCAFLNACSDWL 223

Query: 297 LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWN 356
              LG Q+H  +LR+      +  + V N L+  Y KC ++  +  IF +M  +      
Sbjct: 224 HLNLGMQLHGLVLRSGF----DTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTK------ 273

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
                                    N +SW  +++   QN   E+   L+ + R +  + 
Sbjct: 274 -------------------------NAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVET 308

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
            D+  +  +++CAG+  LE GR +HA  V +  + ++  G+AL+ MY +CG +E +   F
Sbjct: 309 SDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAF 368

Query: 477 NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI--LPDRITFLTVLSACNHAGL 534
           + MP  + V+ N++I      G    A+ L+E+M   G    P+ +TF+++LSAC+ AG 
Sbjct: 369 DEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGA 428

Query: 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
           V+ G + F++M   YGI PG +HY+  +D+L RAG    A + I  +P +P+  +W AL 
Sbjct: 429 VENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQ 488

Query: 595 AGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKK 654
             CR+HG   LG+ AAE LF+L P  +G +VLLSN +A  GRW +A  VR+ ++  G+KK
Sbjct: 489 NACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKK 548

Query: 655 EPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQ 714
             G SWI V N+VH F   D +H   + +   L +L  EM   GY PD K  L+D+E ++
Sbjct: 549 GAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEE 608

Query: 715 KEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGK 774
           K   +S HSEKLA+AFGL+ LP    +R+ KNLRICGDCH+ FKF+S  V REI+VRD  
Sbjct: 609 KAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNN 668

Query: 775 RFHHFRDGKCSCGDYW 790
           RFH F+DG CSC DYW
Sbjct: 669 RFHRFKDGICSCKDYW 684



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 103/232 (44%), Gaps = 34/232 (14%)

Query: 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAI 358
           RLG+ VHA +++T   P P F   + N L+ +Y K      AR +    P R++VSW   
Sbjct: 23  RLGRVVHARIVKTLDSPPPPF---LANYLINMYSKLDHPESARLVLRLTPARNVVSW--- 76

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
                                       T +ISGLAQNG+    L  F +MR EG  P D
Sbjct: 77  ----------------------------TSLISGLAQNGHFSTALVEFFEMRREGVVPND 108

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478
           + F  A  + A L     G+Q+HA  V  G    +  G +   MY +  + + A  +F+ 
Sbjct: 109 FTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDE 168

Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
           +P  +  +WNA I+     G    AIE + +  +    P+ ITF   L+AC+
Sbjct: 169 IPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACS 220



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 132/333 (39%), Gaps = 71/333 (21%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           +L   +H  ++ SGF     + N LID Y K  ++  +  +F E+   + V+  +L+A  
Sbjct: 226 NLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVA-- 283

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                                          AY  N     A  L+   R+D V+  +F 
Sbjct: 284 -------------------------------AYVQNHEDEKASVLYLRSRKDIVETSDFM 312

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
            +SVLSA A +   E     +H   VK+       V +AL+ +Y KC           + 
Sbjct: 313 ISSVLSACAGMAGLELG-RSIHAHAVKACVERTIFVGSALVDMYGKC---------GCIE 362

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS-ENVGVAWNALISGYVHRE 270
            + + FDEMPE++ ++  +++ GY     +D A    + M+    G   N +        
Sbjct: 363 DSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYM-------- 414

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVT 329
                        T+ S++SAC+ +G    G ++   +  T   +P  E      + +V 
Sbjct: 415 -------------TFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHY----SCIVD 457

Query: 330 LYWKCGKVNEARDIFNQMPERDLVS-WNAILSA 361
           +  + G V  A +   +MP +  +S W A+ +A
Sbjct: 458 MLGRAGMVERAYEFIKKMPIQPTISVWGALQNA 490


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 247/748 (33%), Positives = 404/748 (54%), Gaps = 79/748 (10%)

Query: 47  KPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNK 106
           +P   I+ +L D+  K L+ ++A+ +   +     ++  +L+ AY     +  A+++F+ 
Sbjct: 25  QPHASILRKLKDL--KPLQQIHAQIITSGLTHNTFLS-NSLMNAYVYCGLLADAKQIFHH 81

Query: 107 TPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA---LIV 163
           TP K  + V +  +I+  + N     AI++FR+M   + KP+  T +SVL A A   LI 
Sbjct: 82  TPYK--NVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLI- 138

Query: 164 EEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER 223
              +    +HC  V+ G      V  AL+ +Y         S    MG AR++F+ M ER
Sbjct: 139 ---RIAKSVHCFWVRGGFEGNVFVETALVDMY---------SKFGCMGVARQLFESMSER 186

Query: 224 DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEF 283
           + ++W  +++GY  + + + A +  + M                 R   +L     +D +
Sbjct: 187 NVVTWNAIVSGYSDHGFSEEAIDLFNLM-----------------RRKGLL-----VDFY 224

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
           T  S+I A  + G  ++G  +H +++RT  +        +  AL+ +Y     V++A  +
Sbjct: 225 TIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKH----IKTALMDIYVSHNCVDDAHRV 280

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
           F++M  +D+ +W                               T+M++G +   + +  +
Sbjct: 281 FSEMSVKDVAAW-------------------------------TLMLTGFSSGRHWDRAI 309

Query: 404 KLFSQM-RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITM 462
           K F++M  ++  K    A  G ++SC+  GAL+ GR++HA  + + + +++  G+A+I M
Sbjct: 310 KHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDM 369

Query: 463 YARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF 522
           YA CG +E A   F  M   D V WNAMIA  G +G G  AI+L+ QM   G+ PD  TF
Sbjct: 370 YANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTF 429

Query: 523 LTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582
           ++VL AC+HAG+V EG + F  M     + P   HYA  ID+L RAG+   A   I+++P
Sbjct: 430 VSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMP 489

Query: 583 FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAAR 642
           F+P   ++  LL  CRIHGNI LG + ++++F++ P+ AG YVLLSNMYA  G W+    
Sbjct: 490 FQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKM 549

Query: 643 VRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPD 702
            R  +R + +KK+PG S IE++ +++ F+  +  HP+   +   L+ L+L+++K GYVP+
Sbjct: 550 TRASLRSKRMKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPN 609

Query: 703 TKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSK 762
           T  +L D+  D K+  L  HSEK+A+AFGLM+      +R+ KNLR C DCH A KF+SK
Sbjct: 610 TNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPETIIRITKNLRTCDDCHTASKFVSK 669

Query: 763 VVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           V GR +V++D  RFH F+DG CSC DYW
Sbjct: 670 VFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 118/498 (23%), Positives = 216/498 (43%), Gaps = 105/498 (21%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           +A+SVH   +  GF+    +   L+D+Y K   +  AR LF+ + + ++V          
Sbjct: 140 IAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVT--------- 190

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                   +NA+++ YS +     AI+LF  MRR  +  D +T 
Sbjct: 191 ------------------------WNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTI 226

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            S++ A +L V   +    +H  ++++G      +  AL+ +YV         S + +  
Sbjct: 227 MSLIPA-SLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYV---------SHNCVDD 276

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A RVF EM  +D  +WT M+TG+    + D A +  +                      K
Sbjct: 277 AHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFN----------------------K 314

Query: 273 MLMLR-IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
           ML ++ ++LD      ++S+C++SG  + G++VHA  ++T        ++ V +A++ +Y
Sbjct: 315 MLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFAN----NIFVGSAVIDMY 370

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
             CG + +A+  F  M E+D+V WNA                               MI+
Sbjct: 371 ANCGNLEDAKRFFYGMGEKDVVCWNA-------------------------------MIA 399

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY-D 450
           G   NGYG + + LF QM+  G  P +  F   + +C+  G +  G Q+   +V + +  
Sbjct: 400 GNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVI 459

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQ 509
            +L     +I +  R G ++AA    N MP   D   ++ ++ A   HGN     E+ ++
Sbjct: 460 PNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQK 519

Query: 510 MLKEGILPDRITFLTVLS 527
           + +  + P+   +  +LS
Sbjct: 520 IFE--MEPNDAGYYVLLS 535


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1134

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 246/742 (33%), Positives = 389/742 (52%), Gaps = 104/742 (14%)

Query: 54   NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
            N LID+YCK  + + A  +FD +P+                                 R+
Sbjct: 408  NYLIDMYCKCREQLIAYKVFDSMPE---------------------------------RN 434

Query: 114  TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMH 173
             V + A+++ +  N + + ++ LF +M R  + P+ FTF++ L A  L+   EK  +Q+H
Sbjct: 435  VVSWTALMSGHVLNGDLNGSLSLFTEMGRQGIYPNEFTFSTNLKACGLLNALEKG-LQIH 493

Query: 174  CTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMT 233
               +K G  +   V N+L+ +Y KC           +  A +VF  M  R  +SW  M+ 
Sbjct: 494  GFCLKIGFEMMVEVGNSLVDMYSKC---------GRINEAEKVFRWMVGRSLISWNAMIA 544

Query: 234  GYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACA 293
            GYV                 + G    AL +  + +E K   ++ + DEFT TS++ AC+
Sbjct: 545  GYV-----------------HAGYGSRALATFGMMQEAK---IKERPDEFTLTSLLKACS 584

Query: 294  NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV 353
            ++G+   GKQ+H +L+R+     P  S  +  +LV LY KCG +  AR  F+Q+ E+ ++
Sbjct: 585  STGMIYAGKQIHGFLVRS-GFHCPS-SATITGSLVDLYVKCGNLFSARKAFDQIKEKTMI 642

Query: 354  SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
            SW++++  Y   G   EA  LF+ ++E                        L SQ+    
Sbjct: 643  SWSSLILGYAQEGDFVEAMGLFKRLQE------------------------LSSQID--- 675

Query: 414  FKPCDYAFAGAITSCAGLGALENGRQLHAQLVH--SGYDSSLSAGNALITMYARCGVVEA 471
                 +  +  I   A    L+ G+Q+ A +V   SG ++S+S  N+L+ MY +CG+V+ 
Sbjct: 676  ----SFVLSSIIGVFADFALLQQGKQMQALVVKLPSGLETSVS--NSLVDMYLKCGLVDE 729

Query: 472  ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
            A   F  M   D +SW  MI   G+HG G +A+ ++ +ML+  I PD + +L VLSAC+H
Sbjct: 730  AEKCFAEMQLKDVISWTVMITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSH 789

Query: 532  AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
            +G++KEG   F  +    GI P  +HYA  +DLL RAG+  EAK ++D++P KP+  IW+
Sbjct: 790  SGMIKEGEELFSKLLETQGIKPRVEHYACVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQ 849

Query: 592  ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
             LL+ CR+HG+I+LG +  + L ++   +   YV++SN+Y   G W++    R+L   +G
Sbjct: 850  TLLSLCRVHGDIELGKEVGKILLRIDGKNPANYVMMSNLYGQAGYWNEQGNARELGSIKG 909

Query: 652  VKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMR-KLGYVPDTKFVLHDM 710
            ++KE G SW+E++ +VH F   + +HP    + + L+++   +R +LGYV   K  LHD+
Sbjct: 910  LQKEAGMSWVEIEREVHFFRSGEDSHPLTLVIQETLKEVERRLREELGYVYGLKHELHDI 969

Query: 711  ESDQKEYALSTHSEKLAVAFGLMK---LPGGATVRVLKNLRICGDCHNAFKFMSKVVGRE 767
            + + KE  L  HSEKLA+   L        G T+RV KNLR+C DCH   K +SK+    
Sbjct: 970  DDESKEENLRAHSEKLAIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGLSKITKIA 1029

Query: 768  IVVRDGKRFHHFRDGKCSCGDY 789
             VVRD  RFH F DG CSCGDY
Sbjct: 1030 YVVRDAVRFHSFEDGCCSCGDY 1051



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 109/445 (24%), Positives = 192/445 (43%), Gaps = 73/445 (16%)

Query: 179 SGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKN 238
           SG+GL     N LI +Y KC              A +VFD MPER+ +SWT +M+G+V N
Sbjct: 398 SGSGLNLITSNYLIDMYCKCREQLI---------AYKVFDSMPERNVVSWTALMSGHVLN 448

Query: 239 DYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLF 298
             L+ +      M                          I  +EFT+++ + AC      
Sbjct: 449 GDLNGSLSLFTEMGRQ----------------------GIYPNEFTFSTNLKACGLLNAL 486

Query: 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAI 358
             G Q+H + L    K   E  + V N+LV +Y KCG++NEA  +F  M  R L+SWNA+
Sbjct: 487 EKGLQIHGFCL----KIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRWMVGRSLISWNAM 542

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
           ++ YV AG    A + F  M+E  +                               +P +
Sbjct: 543 IAGYVHAGYGSRALATFGMMQEAKIKE-----------------------------RPDE 573

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYD--SSLSAGNALITMYARCGVVEAANCVF 476
           +     + +C+  G +  G+Q+H  LV SG+   SS +   +L+ +Y +CG + +A   F
Sbjct: 574 FTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAF 633

Query: 477 NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536
           + +     +SW+++I    Q G+   A+ L++++ +     D     +++       L++
Sbjct: 634 DQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQ 693

Query: 537 EGRRYFE-TMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
           +G++     +  P G+     +    +D+  + G   EA+     +  K     W  ++ 
Sbjct: 694 QGKQMQALVVKLPSGLETSVSN--SLVDMYLKCGLVDEAEKCFAEMQLKDVIS-WTVMIT 750

Query: 596 GCRIHGNIDLGIQAAEQLFQLMPHH 620
           G   HG   LG +A     +++ H+
Sbjct: 751 GYGKHG---LGKKAVSIFNKMLRHN 772



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 157/333 (47%), Gaps = 15/333 (4%)

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           +L++ N ++  Y        A  +F++M ERN++SWT ++SG   NG     L LF++M 
Sbjct: 403 NLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMG 462

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
            +G  P ++ F+  + +C  L ALE G Q+H   +  G++  +  GN+L+ MY++CG + 
Sbjct: 463 RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRIN 522

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI--LPDRITFLTVLSA 528
            A  VF  M     +SWNAMIA     G G+RA+  +  M +  I   PD  T  ++L A
Sbjct: 523 EAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKA 582

Query: 529 CNHAGLVKEGRRYFETMHG-----PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF 583
           C+  G++  G++    +HG      +  P         +DL  + G    A+   D +  
Sbjct: 583 CSSTGMIYAGKQ----IHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKE 638

Query: 584 KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS--NMYANLGRWDDAA 641
           K     W +L+ G    G+    +   ++L Q +     ++VL S   ++A+        
Sbjct: 639 KTMIS-WSSLILGYAQEGDFVEAMGLFKRL-QELSSQIDSFVLSSIIGVFADFALLQQGK 696

Query: 642 RVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDD 674
           +++ L+       E   S   VD  +   LVD+
Sbjct: 697 QMQALVVKLPSGLETSVSNSLVDMYLKCGLVDE 729



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 104/392 (26%), Positives = 173/392 (44%), Gaps = 78/392 (19%)

Query: 17  ASQLQLCDPRNPITSSLARSVHAHMISSGFK--PREHIINRLIDIYCKSLKLVYARTLFD 74
            S L+ C     I +   + +H  ++ SGF       I   L+D+Y K   L  AR  FD
Sbjct: 577 TSLLKACSSTGMIYA--GKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFD 634

Query: 75  EIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAI 134
           +I +  +++ ++LI  Y+   +                   F  AM              
Sbjct: 635 QIKEKTMISWSSLILGYAQEGD-------------------FVEAM-------------- 661

Query: 135 ELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
            LF+ ++    + D+F  +S++   A     + Q  QM   VVK  +GL TSV N+L+ +
Sbjct: 662 GLFKRLQELSSQIDSFVLSSIIGVFADFALLQ-QGKQMQALVVKLPSGLETSVSNSLVDM 720

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           Y+KC          L+  A + F EM  +D +SWT M+TGY K+           G+ + 
Sbjct: 721 YLKC---------GLVDEAEKCFAEMQLKDVISWTVMITGYGKH-----------GLGKK 760

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA- 313
               +N           KML   I+ DE  Y +V+SAC++SG+ + G+++ + LL T+  
Sbjct: 761 AVSIFN-----------KMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGI 809

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSAYVSAGLIDEAK 372
           KP  E    V    V L  + G++ EA+ + + MP +  V  W  +LS     G I+  K
Sbjct: 810 KPRVEHYACV----VDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHGDIELGK 865

Query: 373 SLFEAMRE---RNLLSWTVMISGLAQNGYGEE 401
            + + +     +N  ++ +M +   Q GY  E
Sbjct: 866 EVGKILLRIDGKNPANYVMMSNLYGQAGYWNE 897


>gi|215768832|dbj|BAH01061.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 842

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 244/733 (33%), Positives = 373/733 (50%), Gaps = 69/733 (9%)

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ 171
           +D V +N  +   +       AI +FR+M+   V  D +T   VL A        ++   
Sbjct: 119 KDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPADGYTCARVLHACGR-AGALREGRA 177

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H   +K        V   L  +Y +          + + AA RV D M     + W  +
Sbjct: 178 VHAYALKLALDAHPLVPGFLAGMYAE---------NADVAAATRVLDAMGAGSVVPWNAV 228

Query: 232 MT-----GYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH----REL-----KMLMLR 277
           +      G V +    AAR    G   NV   WN ++SG       RE       ML   
Sbjct: 229 VACCARLGLVDDALELAARMSRSGPEPNVAT-WNTVLSGCSRHGRDREALGVVASMLKQG 287

Query: 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
           ++ D  T +S++ + AN+GL R G ++H + LR + +P     +    ALV +Y KCG++
Sbjct: 288 LRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEP----DVYTGTALVDMYAKCGRL 343

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER---------------- 381
           + A+ + + +  R+L +WN++++ Y +AG  D A  L E M++                 
Sbjct: 344 DCAQKVLDALEHRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGY 403

Query: 382 -----------------------NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
                                  N++SWT +ISG   NG  E+      +M+ +G +P  
Sbjct: 404 SMNGQSSQAVLLLRQIKAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSL 463

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478
              +  + +CAGL   + G++LH   +   YD  +    ALI MY++ G + +A  +F +
Sbjct: 464 VTMSVLLRACAGLALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFES 523

Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG 538
           +   + V  NAM+  L  HG G  AIEL+  M   G+ PD ITF  +L+AC   GLV EG
Sbjct: 524 IQQKNLVLCNAMLTGLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEG 583

Query: 539 RRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCR 598
             YF++M   YG+ P  ++YA  +DLL R G   EA D I+  P  P A  W ALL GC 
Sbjct: 584 WEYFDSMETKYGVKPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCS 643

Query: 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGC 658
           IHGN+ L   AA  LF L P+++  Y+L+ N+Y     +D+A  ++  M+ RGV   PG 
Sbjct: 644 IHGNLALAEVAARNLFILEPYNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGW 703

Query: 659 SWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYA 718
           SWI+++  +HVF VD   HPE   +Y+ L +LV +++K GYVPDT  + ++++ ++KE  
Sbjct: 704 SWIQIEQGIHVFEVDGKPHPETAEIYEELIRLVFQIKKAGYVPDTSCIAYNVQEEEKEKL 763

Query: 719 LSTHSEKLAVAFGLMKLPGG-ATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFH 777
           L  H+EKLA+ +GL++     A VRV+KN R+C DCH   K +S +  R+I++RD  RFH
Sbjct: 764 LLGHTEKLAITYGLIRSDASRAPVRVMKNTRMCNDCHEVAKHISSLCDRQIILRDAVRFH 823

Query: 778 HFRDGKCSCGDYW 790
           HF DGKCSC DYW
Sbjct: 824 HFVDGKCSCNDYW 836



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 116/277 (41%), Gaps = 37/277 (13%)

Query: 371 AKSLFEAMRE--RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
           A+ L EA  +  ++ + W   ++ LA+    +E + +F +M+  G     Y  A  + +C
Sbjct: 107 ARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPADGYTCARVLHAC 166

Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
              GAL  GR +HA  +    D+       L  MYA    V AA  V + M     V WN
Sbjct: 167 GRAGALREGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWN 226

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG-----------LVKE 537
           A++A   + G    A+EL  +M + G  P+  T+ TVLS C+  G           ++K+
Sbjct: 227 AVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQ 286

Query: 538 GRRYFETM---------------HG--------PYGIPPGEDHYARFIDLLCRAGKFSEA 574
           G R   T                HG           + P        +D+  + G+   A
Sbjct: 287 GLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCA 346

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611
           + V+D+L  + +   W +L+AG    G  D+ ++  E
Sbjct: 347 QKVLDALEHR-NLTTWNSLVAGYANAGRFDIALELVE 382



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 148/342 (43%), Gaps = 31/342 (9%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           +H   + +  +P  +    L+D+Y K  +L  A+ + D +   ++    +L+A Y+ +  
Sbjct: 314 IHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAGR 373

Query: 97  VKLAREMFN--KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
             +A E+    K      D   +N +IT YS N     A+ L R ++   V P+  ++TS
Sbjct: 374 FDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSWTS 433

Query: 155 VLSALALIVEEEKQ---CMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           ++S      E E     C +M    V+      + +L A   + ++              
Sbjct: 434 LISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCF----- 488

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY-VHRE 270
           A RR +D     D +  T ++  Y K   L +A+   + + +   V  NA+++G  VH +
Sbjct: 489 ALRRAYD----CDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQ 544

Query: 271 LK--------MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL-LRTEAKPTPEFSL 321
            +        M    ++ D  T+T++++AC + GL   G +    +  +   KPT E   
Sbjct: 545 GREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVKPTTE--- 601

Query: 322 PVNNA-LVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
             N A +V L  +CG ++EA D   + P +     W A+L+ 
Sbjct: 602 --NYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTG 641


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/622 (37%), Positives = 351/622 (56%), Gaps = 63/622 (10%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER-DELSWT 229
           Q+H   ++ G  +  + L   +  Y+  + SP       M  A +VF ++ +  +   W 
Sbjct: 35  QIHAFSIRHGVSISDAELGKHLIFYLVSLPSP-----PPMSYAHKVFSKIEKPINVFIWN 89

Query: 230 TMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVI 289
           T++ GY +                 +G   N++ +  ++RE+++  L ++ D  TY  +I
Sbjct: 90  TLIRGYAE-----------------IG---NSISAFSLYREMRVSGL-VEPDTHTYPFLI 128

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
            A       RLG+ +H+ ++R+         + V N+L+ LY  CG V            
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSL----IYVQNSLLHLYANCGDVA----------- 173

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
                     SAY           +F+ M E++L++W  +I+G A+NG  EE L L+++M
Sbjct: 174 ----------SAY----------KVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEM 213

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
             +G KP  +     +++CA +GAL  G+++H  ++  G   +L + N L+ +YARCG V
Sbjct: 214 NSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRV 273

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK-EGILPDRITFLTVLSA 528
           E A  +F+ M + +SVSW ++I  L  +G G  AIEL++ M   EG+LP  ITF+ +L A
Sbjct: 274 EEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYA 333

Query: 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
           C+H G+VKEG  YF  M   Y I P  +H+   +DLL RAG+  +A + I S+P +P+  
Sbjct: 334 CSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVV 393

Query: 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648
           IW  LL  C +HG+ DL   A  Q+ QL P+H+G YVLLSNMYA+  RW D  ++RK M 
Sbjct: 394 IWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQML 453

Query: 649 DRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLH 708
             GVKK PG S +EV N+VH FL+ D +HP++ A+Y  L+++   +R  GYVP    V  
Sbjct: 454 RDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYV 513

Query: 709 DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREI 768
           D+E ++KE A+  HSEK+A+AF L+  P  + + V+KNLR+C DCH A K +SKV  REI
Sbjct: 514 DVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREI 573

Query: 769 VVRDGKRFHHFRDGKCSCGDYW 790
           VVRD  RFHHF++G CSC DYW
Sbjct: 574 VVRDRSRFHHFKNGSCSCQDYW 595



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 187/404 (46%), Gaps = 72/404 (17%)

Query: 100 AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD-VKPDNFTFTSVLSA 158
           A ++F+K   K  +   +N +I  Y+   N  +A  L+R+MR    V+PD  T+  ++ A
Sbjct: 72  AHKVFSKIE-KPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKA 130

Query: 159 LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFD 218
           +  + +  +    +H  V++SG G    V N+L+ +Y  C           + +A +VFD
Sbjct: 131 VTTMADV-RLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGD---------VASAYKVFD 180

Query: 219 EMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRI 278
           +MPE+D ++W +++ G+ +N   + A      M+                         I
Sbjct: 181 KMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSK----------------------GI 218

Query: 279 QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
           + D FT  S++SACA  G   LGK+VH Y+++         +L  +N L+ LY +CG+V 
Sbjct: 219 KPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTR----NLHSSNVLLDLYARCGRVE 274

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGY 398
           EA+ +F++M +++ VSW                               T +I GLA NG+
Sbjct: 275 EAKTLFDEMVDKNSVSW-------------------------------TSLIVGLAVNGF 303

Query: 399 GEEGLKLFSQMR-LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAG 456
           G+E ++LF  M   EG  PC+  F G + +C+  G ++ G +   ++      +  +   
Sbjct: 304 GKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHF 363

Query: 457 NALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
             ++ + AR G V+ A     +MP   + V W  ++ A   HG+
Sbjct: 364 GCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGD 407



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 129/293 (44%), Gaps = 37/293 (12%)

Query: 81  IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
           I  + +L+  Y+   +V  A ++F+K P K  D V +N++I  ++ N     A+ L+ +M
Sbjct: 156 IYVQNSLLHLYANCGDVASAYKVFDKMPEK--DLVAWNSVINGFAENGKPEEALALYTEM 213

Query: 141 RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVS 200
               +KPD FT  S+LSA A I        ++H  ++K G        N L+ +Y +C  
Sbjct: 214 NSKGIKPDGFTIVSLLSACAKI-GALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARC-- 270

Query: 201 SPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWN 260
                    +  A+ +FDEM +++ +SWT+++ G   N +   A E    M    G+   
Sbjct: 271 -------GRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPC 323

Query: 261 ALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
                                E T+  ++ AC++ G+ + G +   Y  R   +   E  
Sbjct: 324 ---------------------EITFVGILYACSHCGMVKEGFE---YFRRMREEYKIEPR 359

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAK 372
           +     +V L  + G+V +A +    MP + ++V W  +L A    G  D A+
Sbjct: 360 IEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAE 412



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 4/133 (3%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           +L + VH +MI  G     H  N L+D+Y +  ++  A+TLFDE+   + V+ T+LI   
Sbjct: 239 TLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGL 298

Query: 92  SASDNVKLAREMFN---KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKP 147
           + +   K A E+F     T   +   + +  ++ A SH        E FR MR +  ++P
Sbjct: 299 AVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEP 358

Query: 148 DNFTFTSVLSALA 160
               F  ++  LA
Sbjct: 359 RIEHFGCMVDLLA 371


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/573 (38%), Positives = 333/573 (58%), Gaps = 46/573 (8%)

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE---------LKMLMLRIQ 279
           T ++  Y K D L  AR   D M +   V+W A+IS Y  R          ++ML    +
Sbjct: 101 TRLIVLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTE 160

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            + FT+ +++++C  S  F  G+Q+H+  +    K   E  + V ++L+ +Y K G+   
Sbjct: 161 PNHFTFATILTSCYGSLGFETGRQIHSIAI----KRNYESHMFVGSSLLDMYAKSGR--- 213

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
                                       I +A  +F  + ER++++ T +ISG AQ G  
Sbjct: 214 ----------------------------ICDAHGVFHCLPERDVVACTAIISGYAQMGLD 245

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
           EE LKLF Q+++EG       +A  +T+ +GL AL +G+Q+H+ ++ SG  S +   N+L
Sbjct: 246 EEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSL 305

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG-ILPD 518
           I MY++CG V  A  +F++MP    +SWNAM+    +HG     +EL++ M +E  + PD
Sbjct: 306 IDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPD 365

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETM-HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577
            IT+L VLS C+H  L   G   F  M +G  GI P   HY   +DLL RAG+  EA D 
Sbjct: 366 SITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDF 425

Query: 578 IDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRW 637
           I  +PF P+A IW +LL  CR+H ++++GI   ++L +L P +AG YV+LSN+YA+ G+W
Sbjct: 426 IKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKW 485

Query: 638 DDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKL 697
           +D   +R LM+++ V KEPG SW+E+D  VH F   D  HP  + V   +++L ++ ++ 
Sbjct: 486 EDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVANKVKELSIKFKED 545

Query: 698 GYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAF 757
           GYVPD   VL+D++ +QKE  L  HSEKLA+AFGL+  P G T+RV+KNLRIC DCH+  
Sbjct: 546 GYVPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFA 605

Query: 758 KFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KF+S++  R +++RD  RFH+   G CSCGDYW
Sbjct: 606 KFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 638



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 173/351 (49%), Gaps = 49/351 (13%)

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
           L+M +L  ++    Y S+++ C +    R G++VH ++++T   P    S+ +   L+ L
Sbjct: 51  LQMAILGREVKFEGYDSILNECVSQRAIREGQRVHTHMIKTCYLP----SVYLRTRLIVL 106

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y KC  + +AR +F++MP+R++VSW A++SAY                            
Sbjct: 107 YNKCDCLGDARGMFDEMPQRNVVSWTAMISAY---------------------------- 138

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
              +Q G+  E L LF +M     +P  + FA  +TSC G    E GRQ+H+  +   Y+
Sbjct: 139 ---SQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYE 195

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
           S +  G++L+ MYA+ G +  A+ VF+ +P  D V+  A+I+   Q G    A++L+ Q+
Sbjct: 196 SHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQL 255

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA----RFIDLLC 566
             EG+  + +T+ +VL+A +    +  G++    +     +  G+  Y       ID+  
Sbjct: 256 QIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHV-----LRSGQYSYVVLLNSLIDMYS 310

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           + G    A+ + DS+P +     W A+L G   HG      +   +LF+LM
Sbjct: 311 KCGNVCYARRIFDSMPERTCIS-WNAMLVGYSKHGM----AREVLELFKLM 356



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 133/511 (26%), Positives = 221/511 (43%), Gaps = 126/511 (24%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y S L  C  +  I     + VH HMI + + P  ++  RLI +Y K   L  AR +FDE
Sbjct: 65  YDSILNECVSQRAIRE--GQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDE 122

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +PQ ++V+ T +I+AYS                   R   F                A+ 
Sbjct: 123 MPQRNVVSWTAMISAYS------------------QRGFAF---------------EALN 149

Query: 136 LFRDMRRDDVKPDNFTFTSVLSAL--ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
           LF +M R D +P++FTF ++L++   +L  E  +   Q+H   +K        V ++L+ 
Sbjct: 150 LFVEMLRSDTEPNHFTFATILTSCYGSLGFETGR---QIHSIAIKRNYESHMFVGSSLLD 206

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK----NDYLDAAREF-L 248
           +Y K       S R  +  A  VF  +PERD ++ T +++GY +     + L   R+  +
Sbjct: 207 MYAK-------SGR--ICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQI 257

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
           +GM+ N                             TY SV++A +       GKQVH+++
Sbjct: 258 EGMNSN---------------------------SVTYASVLTALSGLAALNHGKQVHSHV 290

Query: 309 LRTEAKPTPEFSLPV-NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367
           LR     + ++S  V  N+L+ +Y KCG V  AR IF+ MPER  +SWNA+L  Y   G+
Sbjct: 291 LR-----SGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGM 345

Query: 368 IDEAKSLFEAMRERNL-----LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
             E   LF+ MRE N      +++  ++SG +     + GL++F  M             
Sbjct: 346 AREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNM------------- 392

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
                        NG+         G +  +     ++ +  R G VE A      MP V
Sbjct: 393 ------------VNGKD--------GIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFV 432

Query: 483 DSVS-WNAMIAALGQHGNGARAIELYEQMLK 512
            + + W +++ +   H +    I + +++L+
Sbjct: 433 PTAAIWGSLLGSCRVHSDVEIGIIVGQKLLE 463


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/578 (37%), Positives = 333/578 (57%), Gaps = 44/578 (7%)

Query: 222 ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLD 281
           E D      ++  Y K  +++ AR+  DGM E   V+WN +I  Y    ++   L I L+
Sbjct: 93  EGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLE 152

Query: 282 ---------EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                    EFT +SV+SAC  +      K++H   ++T      + +L V  AL+ LY 
Sbjct: 153 MRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKT----CIDLNLYVGTALLDLYA 208

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           KCG                               +I +A  +FE+M++++ ++W+ M++G
Sbjct: 209 KCG-------------------------------MIKDAVQVFESMQDKSSVTWSSMVAG 237

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
             QN   EE L L+ + +    +   +  +  I +C+ L AL  G+Q+HA +  SG+ S+
Sbjct: 238 YVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSN 297

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           +   ++ + MYA+CG +  +  +F+ +   +   WN +I+   +H      + L+E+M +
Sbjct: 298 VFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQ 357

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
           +G+ P+ +TF ++LS C H GLV+EGRR+F+ M   YG+ P   HY+  +D+L RAG  S
Sbjct: 358 DGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLS 417

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632
           EA ++I S+PF P+A IW +LLA CR++ N++L   AAE+LF+L P +AG +VLLSN+YA
Sbjct: 418 EAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYA 477

Query: 633 NLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVL 692
              +W++ A+ RKL+RD  VKK  G SWI++ +KVH F V ++ HP  + +   L+ LV+
Sbjct: 478 ANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVI 537

Query: 693 EMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGD 752
           + RK GY P  +  LHD+E  +KE  L  HSEKLA+ FGLM LP  + VR++KNLRIC D
Sbjct: 538 KFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVD 597

Query: 753 CHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           CH   K  S    R I+VRD  RFHHF DG CSCGD+W
Sbjct: 598 CHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 119/491 (24%), Positives = 229/491 (46%), Gaps = 85/491 (17%)

Query: 25  PRNPITSSLARSVHA------HMISSGFKPRE----HIINRLIDIYCKSLKLVYARTLFD 74
           PR   TSSL+R++          +S G    E    ++++ ++ +  ++  ++ A+    
Sbjct: 26  PRRSNTSSLSRNISVLASYDQEEVSPGRYSNEFSNRNLVHEILQLCARNGAVMEAKACHG 85

Query: 75  EIPQPDIVARTTL----IAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNG 130
           +I + D+    TL    I AYS    V+LAR++F+   +  R  V +N MI  Y+ N   
Sbjct: 86  KIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFD--GMLERSLVSWNTMIGLYTRNRME 143

Query: 131 HAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNA 190
             A+++F +MR +  K   FT +SVLSA  +   +  +C ++HC  VK+   L   V  A
Sbjct: 144 SEALDIFLEMRNEGFKFSEFTISSVLSACGVNC-DALECKKLHCLSVKTCIDLNLYVGTA 202

Query: 191 LISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDG 250
           L+ +Y KC          ++  A +VF+ M ++  ++W++M+ GYV+N   + A      
Sbjct: 203 LLDLYAKC---------GMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEA------ 247

Query: 251 MSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
                      L+     R      + ++ ++FT +SVI AC+N      GKQ+HA + +
Sbjct: 248 ----------LLLYRRAQR------MSLEQNQFTLSSVICACSNLAALIEGKQMHAVICK 291

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
           +        ++ V ++ V +Y KCG + E+  IF+++ E++L  WN I+S          
Sbjct: 292 SGFGS----NVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIIS---------- 337

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
                                G A++   +E + LF +M+ +G  P +  F+  ++ C  
Sbjct: 338 ---------------------GFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGH 376

Query: 431 LGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WN 488
            G +E GR+    +  + G   ++   + ++ +  R G++  A  +  ++P   + S W 
Sbjct: 377 TGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWG 436

Query: 489 AMIAALGQHGN 499
           +++A+   + N
Sbjct: 437 SLLASCRVYKN 447



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 2/169 (1%)

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
           CA  GA+   +  H +++    +  ++  N LI  Y++CG VE A  VF+ M     VSW
Sbjct: 71  CARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSW 130

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
           N MI    ++   + A++++ +M  EG      T  +VLSAC       E ++    +  
Sbjct: 131 NTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKK-LHCLSV 189

Query: 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
              I          +DL  + G   +A  V +S+  K S   W +++AG
Sbjct: 190 KTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVT-WSSMVAG 237


>gi|297800868|ref|XP_002868318.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314154|gb|EFH44577.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/573 (36%), Positives = 335/573 (58%), Gaps = 28/573 (4%)

Query: 220 MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQ 279
           MP RD ++W +++T              L+  + +    W                  ++
Sbjct: 1   MPHRDHIAWASVLTA-------------LNQANLSGKTLWVFSSV--------GSSSGLR 39

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            D+F +++++ ACAN G  +LGKQVH + + +E          V ++LV +Y KC  ++ 
Sbjct: 40  PDDFVFSALVKACANLGSIKLGKQVHCHFIVSEYSNDDV----VKSSLVDMYAKCRLLDC 95

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
           A+ +F+ +  ++ +SW A++S Y  +G  +EA  LF  +  +NL SWT +ISG  Q+G G
Sbjct: 96  AKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRRLPVKNLYSWTALISGFVQSGKG 155

Query: 400 EEGLKLFSQMRLEGFKPCD-YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
            E   +F++MR E     D    +  + +CA L A   GRQ+H  ++  G+DS +   NA
Sbjct: 156 LEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNA 215

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           LI MYA+C  V AA  +F+ M + D VSW ++I  + QHG   +A+ LY++M+  G+ P+
Sbjct: 216 LIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDEMVSHGVKPN 275

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVI 578
            +TF+ ++ AC+H G V +GR  F++M   YGI P   HY   +DLL R+G   EA+++I
Sbjct: 276 EVTFVGLIYACSHVGFVAKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLI 335

Query: 579 DSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF-QLMPHHAGTYVLLSNMYANLGRW 637
            ++PF P  P W ALL+ C+  G   +G++ A+ L     P    TY+LLSN+YA+   W
Sbjct: 336 HTMPFPPDEPTWAALLSACKRQGQGQMGVRIADHLVSSFKPKDPSTYILLSNIYASASLW 395

Query: 638 DDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMR-K 696
              +  R+ + D  V+K+PG S +EV  +  VF   +T+H   + +++ L++L  EMR +
Sbjct: 396 GKVSEARRKLGDMEVRKDPGYSSVEVRKETEVFYAGETSHALKEDIFRLLKKLEEEMRIR 455

Query: 697 LGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNA 756
            GYVPDT ++LHDM+  +KE  L  HSE+ AVA+GL+K   G  +R++KNLR+CGDCH  
Sbjct: 456 NGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVV 515

Query: 757 FKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
            K +S++  REI+VRD  R+HHF+ GKCSC D+
Sbjct: 516 LKHISEITEREIIVRDATRYHHFKGGKCSCNDF 548



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 155/332 (46%), Gaps = 41/332 (12%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L + VH H I S +   + + + L+D+Y K   L  A+ +FD I   + ++ T +++ Y+
Sbjct: 60  LGKQVHCHFIVSEYSNDDVVKSSLVDMYAKCRLLDCAKAVFDSIRVKNTISWTAMVSGYA 119

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP-DNFT 151
            S   + A E+F + P+K  +   + A+I+ +  +  G  A  +F +MRR+ V   D   
Sbjct: 120 KSGRKEEALELFRRLPVK--NLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLV 177

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
            +S++ A A +        Q+H  V+  G      + NALI +Y KC         S + 
Sbjct: 178 LSSIVGACANLA-ASIAGRQVHGLVIALGFDSCVFISNALIDMYAKC---------SDVI 227

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
           AA+ +F  M  RD +SWT+++ G  ++   + A    D                      
Sbjct: 228 AAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYD---------------------- 265

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVTL 330
           +M+   ++ +E T+  +I AC++ G    G+++   + +    +P    SL     L+ L
Sbjct: 266 EMVSHGVKPNEVTFVGLIYACSHVGFVAKGRELFQSMTKDYGIRP----SLQHYTCLLDL 321

Query: 331 YWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
             + G ++EA ++ + MP   D  +W A+LSA
Sbjct: 322 LGRSGLLDEAENLIHTMPFPPDEPTWAALLSA 353



 Score = 48.5 bits (114), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 5/138 (3%)

Query: 27  NPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTT 86
           N   S   R VH  +I+ GF     I N LID+Y K   ++ A+ +F  +   D+V+ T+
Sbjct: 187 NLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTS 246

Query: 87  LIAAYSASDNVKLAREMFNKT---PLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD 143
           LI   +     + A  ++++     +K  +  F   +I A SH        ELF+ M +D
Sbjct: 247 LIVGMAQHGQAEKALALYDEMVSHGVKPNEVTFV-GLIYACSHVGFVAKGRELFQSMTKD 305

Query: 144 -DVKPDNFTFTSVLSALA 160
             ++P    +T +L  L 
Sbjct: 306 YGIRPSLQHYTCLLDLLG 323


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/511 (39%), Positives = 310/511 (60%), Gaps = 5/511 (0%)

Query: 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
           ++ T T V+ AC+N+   R G QV  ++++          + V NAL+ LY  C +V  A
Sbjct: 132 NKHTLTFVLQACSNAFAIREGAQVQTHVIKLGFVK----DVFVRNALIHLYCTCCRVESA 187

Query: 341 RDIFNQMPE-RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
           + +F+++P  RD+VSWN+++  +V  G I  A+ LF  M E++++SW  +ISG  QNG  
Sbjct: 188 KQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGEL 247

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
           E+ L  F ++  +  +P +      + + A LG LE G+++H+      +  + S G AL
Sbjct: 248 EKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTAL 307

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           + MYA+CG ++ +  +F+ MP  D  SWN MI  L  HG G  A+ L+E+ L +G  P  
Sbjct: 308 VDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVN 367

Query: 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579
           +TF+ VL+AC+ AGLV EG+ +F+ M   YGI P  +HY   +DLL RAG   +A ++I+
Sbjct: 368 VTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMIN 427

Query: 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639
            +P  P   +W ++L  C++HG I+LG +   +L Q+ P H G YV L+ ++A L +W+D
Sbjct: 428 RMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKLIQMDPTHNGHYVQLARIFARLRKWED 487

Query: 640 AARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGY 699
            ++VR+LM +R   K  G S IE + +VH F+  D  H     +YK LE + + +   GY
Sbjct: 488 VSKVRRLMAERNSNKIAGWSLIEAEGRVHRFVAGDKEHERTTEIYKMLEIMGVRIAAAGY 547

Query: 700 VPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKF 759
             +   VLHD+E ++KE A+  HSE+LA+AFGL+    G  +R++KNLR+CGDCH   K 
Sbjct: 548 SANVSSVLHDIEEEEKENAIKEHSERLAIAFGLLVTKDGDCIRIIKNLRVCGDCHEVSKI 607

Query: 760 MSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +S V  REI+VRDG RFHHF+ G CSC DYW
Sbjct: 608 ISLVFEREIIVRDGSRFHHFKKGICSCQDYW 638



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 122/506 (24%), Positives = 201/506 (39%), Gaps = 126/506 (24%)

Query: 35  RSVHAHMISSGFKPREHIINRLID---IYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           +  HA ++  G      I + L+    I   SL   YA ++++ I  P + A   +I  +
Sbjct: 48  KQAHARILVLGLANDGRITSHLLAFLAISSSSLPSDYALSIYNSISHPTVFATNNMIRCF 107

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
              D   L R                   I+ YSH      A             P+  T
Sbjct: 108 VKGD---LPRHS-----------------ISLYSHMCRSFVA------------APNKHT 135

Query: 152 FTSVLSAL--ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC--------VSS 201
            T VL A   A  + E  Q +Q H  V+K G      V NALI +Y  C        V  
Sbjct: 136 LTFVLQACSNAFAIREGAQ-VQTH--VIKLGFVKDVFVRNALIHLYCTCCRVESAKQVFD 192

Query: 202 PFVSSRSL---------------MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAARE 246
              SSR +               +  A+++F EMPE+D +SW T+++G V+N  L+ A +
Sbjct: 193 EVPSSRDVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALD 252

Query: 247 FLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
           +   + E                       +++ +E    S+++A A  G    GK++H+
Sbjct: 253 YFKELGEQ----------------------KLRPNEAILVSLLAAAAQLGTLEYGKRIHS 290

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366
                    T      +  ALV +Y KCG ++E+R +F++MPE+D  SWN ++    + G
Sbjct: 291 IANSLRFPMTAS----LGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATHG 346

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
           L                               G+E L LF +   +GF P +  F G +T
Sbjct: 347 L-------------------------------GQEALALFEKFLTQGFHPVNVTFIGVLT 375

Query: 427 SCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMPN-VDS 484
           +C+  G +  G+     +  + G +  +     ++ + +R G V  A  + N MP   D 
Sbjct: 376 ACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMINRMPAPPDP 435

Query: 485 VSWNAMIAALGQHGNGARAIELYEQM 510
           V W +++ +   HG     IEL E++
Sbjct: 436 VLWASVLGSCQVHG----FIELGEEI 457



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 150/352 (42%), Gaps = 41/352 (11%)

Query: 20  LQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQP 79
           LQ C   N         V  H+I  GF     + N LI +YC   ++  A+ +FDE+P  
Sbjct: 140 LQACS--NAFAIREGAQVQTHVIKLGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSS 197

Query: 80  -DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFR 138
            D+V+  ++I  +     + +A+++F + P K  D + +  +I+    N     A++ F+
Sbjct: 198 RDVVSWNSMIVGFVRLGQISVAQKLFVEMPEK--DVISWGTIISGCVQNGELEKALDYFK 255

Query: 139 DMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
           ++    ++P+     S+L+A A +   E    ++H         +  S+  AL+ +Y KC
Sbjct: 256 ELGEQKLRPNEAILVSLLAAAAQLGTLEYG-KRIHSIANSLRFPMTASLGTALVDMYAKC 314

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
                      +  +R +FD MPE+D+ SW  M+ G   +     A    +         
Sbjct: 315 ---------GCIDESRFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFE--------- 356

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                        K L         T+  V++AC+ +GL   GK  H + L T+     E
Sbjct: 357 -------------KFLTQGFHPVNVTFIGVLTACSRAGLVSEGK--HFFKLMTDTYGI-E 400

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPE-RDLVSWNAILSAYVSAGLID 369
             +     +V L  + G V +A ++ N+MP   D V W ++L +    G I+
Sbjct: 401 PEMEHYGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIE 452



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 114/255 (44%), Gaps = 14/255 (5%)

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RLEGFKPCDYAFAGAITS 427
           D A S++ ++    + +   MI    +       + L+S M R     P  +     + +
Sbjct: 83  DYALSIYNSISHPTVFATNNMIRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQA 142

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV-DSVS 486
           C+   A+  G Q+   ++  G+   +   NALI +Y  C  VE+A  VF+ +P+  D VS
Sbjct: 143 CSNAFAIREGAQVQTHVIKLGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVS 202

Query: 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546
           WN+MI    + G  + A +L+ +M ++    D I++ T++S C   G +++   YF+ + 
Sbjct: 203 WNSMIVGFVRLGQISVAQKLFVEMPEK----DVISWGTIISGCVQNGELEKALDYFKEL- 257

Query: 547 GPYGIPPGEDHYARFIDLLCRAGKFSEAK---DVIDSLPFKPSAPIWEALLAGCRIHGNI 603
           G   + P E      +    + G     K    + +SL F  +A +  AL+      G I
Sbjct: 258 GEQKLRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTALVDMYAKCGCI 317

Query: 604 DLGIQAAEQLFQLMP 618
           D     +  LF  MP
Sbjct: 318 D----ESRFLFDRMP 328


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/589 (37%), Positives = 337/589 (57%), Gaps = 45/589 (7%)

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
           +A  +++ M +++ +S   ++ GYV+   L +AR+  D M +     WNA+I+G +  E 
Sbjct: 12  SAVALYERMRKKNFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEY 71

Query: 272 ---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
                    +M  L    DE+T  SV S  A      +G+Q+H Y +    K   E  L 
Sbjct: 72  NEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAI----KYGLELDLV 127

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
           VN++L  +Y + GK+ +   +                                 +M  RN
Sbjct: 128 VNSSLAHMYMRNGKLQDGEIVI-------------------------------RSMPVRN 156

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
           L++W  +I G AQNG  E  L L+  M++ G +P    F   ++SC+ L     G+Q+HA
Sbjct: 157 LVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHA 216

Query: 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
           + +  G  S ++  ++LI+MY++CG +  A   F+   + D V W++MI+A G HG G  
Sbjct: 217 EAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDE 276

Query: 503 AIELYEQMLKEGILP-DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF 561
           AI+L+  M ++  +  + + FL +L AC+H+GL  +G   F+ M   YG  PG  HY   
Sbjct: 277 AIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCV 336

Query: 562 IDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621
           +DLL RAG   +A+ +I S+P KP   IW+ LL+ C IH N ++  +  +++ ++ P+ +
Sbjct: 337 VDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQKVFKEILEIDPNDS 396

Query: 622 GTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQ 681
             YVLL+N++A+  RW D + VRK MRD+ VKKE G SW E   +VH F + D +  +++
Sbjct: 397 ACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSK 456

Query: 682 AVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATV 741
            +Y YL++L LEM+  GY PDT  VLHDM+ ++KE  L  HSEKLAVAF LM LP GA +
Sbjct: 457 EIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPI 516

Query: 742 RVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           R++KNLR+C DCH AFK++S ++ REI +RDG RFHHF +GKCSCGDYW
Sbjct: 517 RIIKNLRVCSDCHVAFKYISVIMNREITLRDGSRFHHFINGKCSCGDYW 565



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 150/306 (49%), Gaps = 4/306 (1%)

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWT 387
           +++Y K G +  A  ++ +M +++ +S N +++ YV AG +  A+ +F+ M +R L +W 
Sbjct: 1   MSMYSKLGDLPSAVALYERMRKKNFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWN 60

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447
            MI+GL Q  Y EEGL LF +M   GF P +Y      +  AGL ++  G+Q+H   +  
Sbjct: 61  AMIAGLIQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKY 120

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
           G +  L   ++L  MY R G ++    V  +MP  + V+WN +I    Q+G     + LY
Sbjct: 121 GLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLY 180

Query: 508 EQMLKEGILPDRITFLTVLSACNHAGLVKEGRR-YFETMHGPYGIPPGEDHYARFIDLLC 566
           + M   G  P++ITF+TVLS+C+   +  +G++ + E +    G        +  I +  
Sbjct: 181 KMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAI--KIGASSVVAVVSSLISMYS 238

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626
           + G   +A         +    +W ++++    HG  D  I+    + +           
Sbjct: 239 KCGCLGDAAKAFSEREDEDEV-MWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAF 297

Query: 627 LSNMYA 632
           L+ +YA
Sbjct: 298 LNLLYA 303



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 106/463 (22%), Positives = 203/463 (43%), Gaps = 80/463 (17%)

Query: 57  IDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVF 116
           + +Y K   L  A  L++ + + + ++   LI  Y  + ++  AR++F++ P   R    
Sbjct: 1   MSMYSKLGDLPSAVALYERMRKKNFMSSNILINGYVRAGDLVSARKVFDEMP--DRKLTT 58

Query: 117 YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTV 176
           +NAMI            + LFR+M      PD +T  SV S  A +        Q+H   
Sbjct: 59  WNAMIAGLIQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGL-RSVSIGQQIHGYA 117

Query: 177 VKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV 236
           +K G  L   V ++L  +Y++            +     V   MP R+ ++W T++ G  
Sbjct: 118 IKYGLELDLVVNSSLAHMYMR---------NGKLQDGEIVIRSMPVRNLVAWNTLIMGNA 168

Query: 237 KNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSG 296
           +N           G  E V          Y+++ +K+   R   ++ T+ +V+S+C++  
Sbjct: 169 QN-----------GCPETV---------LYLYKMMKISGCRP--NKITFVTVLSSCSDLA 206

Query: 297 LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWN 356
           +   G+Q+HA  +    K      + V ++L+++Y KCG + +A   F++  + D V W+
Sbjct: 207 IRGQGQQIHAEAI----KIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWS 262

Query: 357 AILSAYVSAGLIDEAKSLFEAMRER-----NLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
           +++SAY   G  DEA  LF +M E+     N +++  ++   + +G  ++GL+LF  M  
Sbjct: 263 SMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVE 322

Query: 412 E-GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
           + GFKP                                    L     ++ +  R G ++
Sbjct: 323 KYGFKP-----------------------------------GLKHYTCVVDLLGRAGCLD 347

Query: 471 AANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
            A  +  +MP   D V W  +++A   H N   A ++++++L+
Sbjct: 348 QAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQKVFKEILE 390



 Score = 39.7 bits (91), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 6/132 (4%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY-- 91
            + +HA  I  G      +++ LI +Y K   L  A   F E    D V  +++I+AY  
Sbjct: 211 GQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGF 270

Query: 92  --SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM-RRDDVKPD 148
                + +KL   M  +T +++ +  F N ++ A SH+      +ELF  M  +   KP 
Sbjct: 271 HGQGDEAIKLFNSMAEQTEMEVNEVAFLN-LLYACSHSGLKDKGLELFDMMVEKYGFKPG 329

Query: 149 NFTFTSVLSALA 160
              +T V+  L 
Sbjct: 330 LKHYTCVVDLLG 341


>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 793

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 263/785 (33%), Positives = 401/785 (51%), Gaps = 114/785 (14%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           YA  L  C        +L + +H   I  G   +  + N LID+YCK  ++ +AR LF+ 
Sbjct: 113 YAGVLSACGQIKDF--ALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFE- 169

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
                            +SD +               D V +N++IT Y+        ++
Sbjct: 170 -----------------SSDEL---------------DNVSWNSLITGYARVGAYEEMLK 197

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALAL----IVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
           L   M    ++ + FT  S L +  L    +V   K    +H   VK G  L   V  AL
Sbjct: 198 LLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKT---LHGYTVKQGLDLDIVVGTAL 254

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           + +Y K            +G A ++F   P ++ + +  M+ G+++ + +D         
Sbjct: 255 LDMYAK---------TGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKE------- 298

Query: 252 SENVGVAWNALISGYVHRELKMLMLR--IQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
                 A+ AL       +L   M R  I+  +FT++S+I  C +   F  GKQ+HA++ 
Sbjct: 299 -----CAYEAL-------KLFSQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHIC 346

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLID 369
           +   + + EF   + + L+ LY   G   +    FN  P+ D+VS               
Sbjct: 347 KHNIQ-SDEF---IGSTLIELYSLLGSTEDQLKCFNSTPKLDIVS--------------- 387

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
                           WT MI+G AQNG  E  L LF ++   G KP ++     +++CA
Sbjct: 388 ----------------WTTMIAGYAQNGQFESALALFYELLASGKKPDEFIITTMLSACA 431

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
            + A  +G Q+H   V +G  +     N+ I+MYA+ G +++A   F  + N D VSW+ 
Sbjct: 432 DVAAERSGEQVHGYAVKTGIGTLAIVQNSQISMYAKSGNLDSAKITFEEIKNPDVVSWSV 491

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY 549
           MI +  QHG+   AI L+E M   GI P++ITFL VL+AC+H GLV+EG RY+E+M   Y
Sbjct: 492 MICSNAQHGHAKDAINLFELMKSYGIHPNQITFLGVLTACSHGGLVEEGLRYYESMKKDY 551

Query: 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609
            +     H    +DLL RAG+  +AK+ I +  F     +W  LL+GCRI+ +I  G   
Sbjct: 552 DMKINVKHCTCIVDLLSRAGRLLDAKNFILNSGFGDHPVMWRTLLSGCRIYKDIVTGKHV 611

Query: 610 AEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHV 669
           AE+L +L P  + +YVLL N+Y + G    A ++R+LM+DRG++KEPG SWIEV N+VH 
Sbjct: 612 AEKLIELDPQESSSYVLLYNIYTDAGIDLPATKIRELMKDRGIRKEPGQSWIEVGNEVHS 671

Query: 670 FLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKE----YALSTHSEK 725
           F+V D +HP +Q +YK LE ++ + RK+GY+ D K  + ++    KE      ++ HSEK
Sbjct: 672 FVVGDISHPMSQIIYKKLEGMLEKKRKIGYI-DQK--IQNVTISTKEVKGTLGVNHHSEK 728

Query: 726 LAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCS 785
           LAV+FG++ LP  A V+V+KNLR+C DCH   K +S V  REI++RD  RFHHF++G CS
Sbjct: 729 LAVSFGIVSLPPSAPVKVMKNLRVCHDCHATMKLISVVEKREIILRDSLRFHHFKEGSCS 788

Query: 786 CGDYW 790
           C DYW
Sbjct: 789 CNDYW 793



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 152/590 (25%), Positives = 247/590 (41%), Gaps = 111/590 (18%)

Query: 38  HAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNV 97
           HAHMI + F P   ++N  +++Y K  ++  A+ LFD + +                   
Sbjct: 32  HAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKLFDRMSE------------------- 72

Query: 98  KLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLS 157
                         R  + YN +I+ Y      H AI LF + R   +K D F++  VLS
Sbjct: 73  --------------RSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVLS 118

Query: 158 ALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVF 217
           A   I ++      +H   +  G G    + N LI +Y KC           +  AR +F
Sbjct: 119 ACGQI-KDFALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKC---------ERIDHARLLF 168

Query: 218 DEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLR 277
           +   E D +SW +++TGY +   + A  E L  +                   +KM    
Sbjct: 169 ESSDELDNVSWNSLITGYAR---VGAYEEMLKLL-------------------VKMHHTG 206

Query: 278 IQLDEFTYTSVISAC--ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG 335
           ++L+ FT  S + +C    + +   GK +H Y +    K   +  + V  AL+ +Y K G
Sbjct: 207 LRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTV----KQGLDLDIVVGTALLDMYAKTG 262

Query: 336 KVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQ 395
            + +A  +F   P +++V +NA+++ ++    ID+  +                      
Sbjct: 263 YLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAY--------------------- 301

Query: 396 NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSA 455
                E LKLFSQM+ +G KP D+ F+  I  C  + A E G+Q+HA +      S    
Sbjct: 302 -----EALKLFSQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICKHNIQSDEFI 356

Query: 456 GNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI 515
           G+ LI +Y+  G  E     FN+ P +D VSW  MIA   Q+G    A+ L+ ++L  G 
Sbjct: 357 GSTLIELYSLLGSTEDQLKCFNSTPKLDIVSWTTMIAGYAQNGQFESALALFYELLASGK 416

Query: 516 LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF----IDLLCRAGKF 571
            PD     T+LSAC      + G    E +HG Y +  G    A      I +  ++G  
Sbjct: 417 KPDEFIITTMLSACADVAAERSG----EQVHG-YAVKTGIGTLAIVQNSQISMYAKSGNL 471

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621
             AK   + +   P    W  ++     HG+     + A  LF+LM  + 
Sbjct: 472 DSAKITFEEIK-NPDVVSWSVMICSNAQHGH----AKDAINLFELMKSYG 516



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 140/323 (43%), Gaps = 47/323 (14%)

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
           LD   YT ++   + SG    GK  HA++++T   P                        
Sbjct: 7   LDSVAYTKLVQFSSKSGSSIHGKLAHAHMIKTAFNPCLFLL------------------- 47

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
                           N  L+ Y   G +  A+ LF+ M ER+++S+ ++ISG    G+ 
Sbjct: 48  ----------------NNFLNLYSKWGEMGNAQKLFDRMSERSVISYNILISGYGGMGFY 91

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
            + + LFS+ R+   K   +++AG +++C  +     G+ +H   +  G    +   N L
Sbjct: 92  HKAIGLFSEARMACLKLDKFSYAGVLSACGQIKDFALGKVIHGLAIVCGLGQQVFLTNLL 151

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           I MY +C  ++ A  +F +   +D+VSWN++I    + G     ++L  +M   G+  + 
Sbjct: 152 IDMYCKCERIDHARLLFESSDELDNVSWNSLITGYARVGAYEEMLKLLVKMHHTGLRLNA 211

Query: 520 ITFLTVLSAC--NHAGLVKEGRRYFETMHGPYGIPPGEDH----YARFIDLLCRAGKFSE 573
            T  + L +C  N   +V  G+    T+HG Y +  G D         +D+  + G   +
Sbjct: 212 FTLGSALKSCYLNLNNMVSYGK----TLHG-YTVKQGLDLDIVVGTALLDMYAKTGYLGD 266

Query: 574 AKDVIDSLPFKPSAPIWEALLAG 596
           A  +  + P   +  ++ A++AG
Sbjct: 267 AIQLFRTSP-NQNVVMYNAMIAG 288



 Score = 43.9 bits (102), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 89/200 (44%), Gaps = 25/200 (12%)

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
           G+  +G+  HA ++ + ++  L   N  + +Y++ G +  A  +F+ M     +S+N +I
Sbjct: 23  GSSIHGKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKLFDRMSERSVISYNILI 82

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
           +  G  G   +AI L+ +     +  D+ ++  VLSAC        G+     +HG   +
Sbjct: 83  SGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVLSACGQIKDFALGK----VIHGLAIV 138

Query: 552 PP-GEDHYAR--FIDLLCRAGKFSEAKDVIDSLPFKPSAPI----WEALLAGCRIHGNID 604
              G+  +     ID+ C+  +   A+     L F+ S  +    W +L+ G    G   
Sbjct: 139 CGLGQQVFLTNLLIDMYCKCERIDHAR-----LLFESSDELDNVSWNSLITGYARVG--- 190

Query: 605 LGIQAAEQLFQLMP--HHAG 622
               A E++ +L+   HH G
Sbjct: 191 ----AYEEMLKLLVKMHHTG 206


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 266/759 (35%), Positives = 380/759 (50%), Gaps = 105/759 (13%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R VH H+I  GF+    ++N LI +Y K                 DI +          
Sbjct: 214 GREVHLHVIRYGFESDVDVVNALITMYVKC---------------GDIFS---------- 248

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                 AR +F++ P   RD + +NAMI+ Y  N      + LF  MR   V PD  T T
Sbjct: 249 ------ARLVFDRMP--RRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMT 300

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           SV+SA   +  +E+   ++H  V+K+G     SV N+LI ++         SS      A
Sbjct: 301 SVISACEAL-GDERLGREVHGYVIKTGFVAEVSVNNSLIQMH---------SSVGCWDEA 350

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
             VF +M  +D +SWT M++GY KN   + A E    M E+ GV                
Sbjct: 351 EMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIM-EHEGVV--------------- 394

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
                  DE T  SV+SACA  GL   G  +H +  RT         + V N+L+ +Y K
Sbjct: 395 ------PDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSY----VIVANSLIDMYSK 444

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
           C                                 ID+A  +F  +  +N++SWT +I GL
Sbjct: 445 CR-------------------------------CIDKALEVFHRIPNKNVISWTSIILGL 473

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL 453
             N    E L  F QM L   KP        +++CA +GAL  G+++HA  + +G     
Sbjct: 474 RLNYRSFEALFFFQQMIL-SLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDG 532

Query: 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE 513
              NAL+ MY RCG +E A   FN+    D  SWN ++    Q G G  A+EL+ +M++ 
Sbjct: 533 FLPNALLDMYVRCGRMEPAWNQFNSCEK-DVASWNILLTGYAQQGKGGLAVELFHKMIES 591

Query: 514 GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE 573
            + PD ITF ++L AC+ +G+V +G  YFE+M   + I P   HYA  +DLL RAG+  +
Sbjct: 592 DVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLED 651

Query: 574 AKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN 633
           A + I  +P  P   IW ALL  CRI+ N++LG  AA+ +F++     G Y+LL N+YA+
Sbjct: 652 AYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYAD 711

Query: 634 LGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLE 693
            G+WD+ ARVRK+MR+  +  +PGCSW+EV  +VH FL  D  HP+ + +   LE    +
Sbjct: 712 SGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEK 771

Query: 694 MRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDC 753
           M   G          D+++ + E     HSE+LA+AFGL+    G  + V KNL +C +C
Sbjct: 772 MEATGLSMSKDSRRDDIDASKAE-IFCGHSERLAIAFGLINTVPGTPIWVTKNLYMCENC 830

Query: 754 HNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD--YW 790
           HN  KF+SKVV R I VRD ++FHHF+DG CSCGD  YW
Sbjct: 831 HNTVKFISKVVRRGISVRDTEQFHHFKDGVCSCGDEGYW 869



 Score =  192 bits (488), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 141/509 (27%), Positives = 234/509 (45%), Gaps = 81/509 (15%)

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ 171
           RD   +N ++  Y+       A+ L+  M    ++PD +TF  VL     + +  +   +
Sbjct: 158 RDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARG-RE 216

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H  V++ G      V+NALI++YVKC           + +AR VFD MP RD +SW  M
Sbjct: 217 VHLHVIRYGFESDVDVVNALITMYVKCGD---------IFSARLVFDRMPRRDRISWNAM 267

Query: 232 MTGYVKNDY-LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++GY +ND  L+  R F                  ++ RE       +  D  T TSVIS
Sbjct: 268 ISGYFENDVCLEGLRLF------------------FMMRE-----FFVDPDLMTMTSVIS 304

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           AC   G  RLG++VH Y+++T         + VNN+L+ ++   G  +EA  +F++M  +
Sbjct: 305 ACEALGDERLGREVHGYVIKTGFVA----EVSVNNSLIQMHSSVGCWDEAEMVFSKMEFK 360

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           DLVSW A++S Y                                +NG  E+ ++ ++ M 
Sbjct: 361 DLVSWTAMISGY-------------------------------EKNGLPEKAVETYTIME 389

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
            EG  P +   A  +++CAGLG L+ G  LH     +G  S +   N+LI MY++C  ++
Sbjct: 390 HEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCID 449

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
            A  VF+ +PN + +SW ++I  L  +     A+  ++QM+   + P+ +T ++VLSAC 
Sbjct: 450 KALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMIL-SLKPNSVTLVSVLSACA 508

Query: 531 HAGLVKEGRRY----FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
             G +  G+        T  G  G  P        +D+  R G+   A +  +S   +  
Sbjct: 509 RIGALSCGKEIHAHALRTGLGFDGFLPNA-----LLDMYVRCGRMEPAWNQFNSC--EKD 561

Query: 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
              W  LL G    G   L ++   ++ +
Sbjct: 562 VASWNILLTGYAQQGKGGLAVELFHKMIE 590



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 126/434 (29%), Positives = 197/434 (45%), Gaps = 76/434 (17%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           ++H  V K+ T L   + NAL+S++V+            +  A  VF +M ERD  SW  
Sbjct: 115 RVHSYVSKTVTRLGVRLGNALLSMFVRFGD---------LVEAWYVFGKMAERDLFSWNV 165

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++ GY K  Y D A                       HR   ML + I+ D +T+  V+ 
Sbjct: 166 LVGGYAKAGYFDEALNLY-------------------HR---MLWVGIRPDVYTFPCVLR 203

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
            C        G++VH +++R       E  + V NAL+T+Y KCG +  AR +F++MP R
Sbjct: 204 TCGGLPDLARGREVHLHVIRYGF----ESDVDVVNALITMYVKCGDIFSARLVFDRMPRR 259

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           D +SWNA++S Y                                +N    EGL+LF  MR
Sbjct: 260 DRISWNAMISGYF-------------------------------ENDVCLEGLRLFFMMR 288

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
                P        I++C  LG    GR++H  ++ +G+ + +S  N+LI M++  G  +
Sbjct: 289 EFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWD 348

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
            A  VF+ M   D VSW AMI+   ++G   +A+E Y  M  EG++PD IT  +VLSAC 
Sbjct: 349 EAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACA 408

Query: 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYA----RFIDLLCRAGKFSEAKDVIDSLPFKPS 586
             GL+ +G      M   +    G   Y       ID+  +     +A +V   +P K +
Sbjct: 409 GLGLLDKG-----IMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNK-N 462

Query: 587 APIWEALLAGCRIH 600
              W +++ G R++
Sbjct: 463 VISWTSIILGLRLN 476



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 157/333 (47%), Gaps = 45/333 (13%)

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           M  L++ ++E TY +++  C        G +VH+Y+    +K      + + NAL++++ 
Sbjct: 85  MQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYV----SKTVTRLGVRLGNALLSMFV 140

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           + G + EA  +F +M ERDL SWN ++  Y  AG  DEA                     
Sbjct: 141 RFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEA--------------------- 179

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
                     L L+ +M   G +P  Y F   + +C GL  L  GR++H  ++  G++S 
Sbjct: 180 ----------LNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESD 229

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           +   NALITMY +CG + +A  VF+ MP  D +SWNAMI+   ++      + L+  M +
Sbjct: 230 VDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMRE 289

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG----EDHYARFIDLLCRA 568
             + PD +T  +V+SAC   G  + GR     +HG Y I  G           I +    
Sbjct: 290 FFVDPDLMTMTSVISACEALGDERLGRE----VHG-YVIKTGFVAEVSVNNSLIQMHSSV 344

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
           G + EA+ V   + FK     W A+++G   +G
Sbjct: 345 GCWDEAEMVFSKMEFKDLVS-WTAMISGYEKNG 376


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/547 (40%), Positives = 321/547 (58%), Gaps = 19/547 (3%)

Query: 259 WNALISGY---------VHRELKMLML----RIQLDEFTYTSVISACANSGLFRLGKQVH 305
           WN +I  Y         +H  L+ML L    ++  DE+T+T VI++C++      G+ VH
Sbjct: 142 WNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQISLIYGEIVH 201

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365
             ++++      E +L V N+++ +     ++ +AR +FNQM ERD+ SW ++L  Y   
Sbjct: 202 GMVVKSGF----ESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKH 257

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG-FKPCDYAFAGA 424
           G +D A  LF  M  RN +SW VMISG    G   E L  F  M  +    P +      
Sbjct: 258 GEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLVCV 317

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           +++CA LGAL+ G  +H  +   G   S +   ALI MYA+CG ++ A+ VFN +   D 
Sbjct: 318 LSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDV 377

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
           +S+ +MI+ L  HG G  A+ ++ QML E ++P+ IT L VL+ C+H+GLV+EG      
Sbjct: 378 LSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSSILAN 437

Query: 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
           M   +GI P  +HY  +IDLL RAG    A +V+ ++P +P   IW ALL+  RIH N++
Sbjct: 438 MESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIHHNVN 497

Query: 605 LGIQAAEQLFQLMPH-HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEV 663
           LG Q    + QL    H G  VLLSN+YA+LGRW+    +RKLM DR  +  PGCSWIEV
Sbjct: 498 LGEQIISHIGQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCSWIEV 557

Query: 664 DNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHS 723
           +  VH F V D  HP+   +   L +++  + ++GY  +T  V  D+  ++KE A++ HS
Sbjct: 558 NGLVHEFRVADQLHPQIVEIRNKLNEILKRLSQIGYSANTMQVSFDLNEEEKEQAVAWHS 617

Query: 724 EKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGK 783
           EKLA+AFGLM    G  +R++KNLR C DCH+A K +S+V GREIVVRD  RFH F +G 
Sbjct: 618 EKLAIAFGLMSTEPGTLIRIVKNLRTCEDCHSALKTISQVYGREIVVRDRSRFHTFIEGD 677

Query: 784 CSCGDYW 790
           CSC D+W
Sbjct: 678 CSCKDFW 684



 Score =  150 bits (378), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 129/446 (28%), Positives = 200/446 (44%), Gaps = 73/446 (16%)

Query: 86  TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD- 144
           +LI  Y  + N   AR +F+  P        +N MI  YS   N    I LF  M   D 
Sbjct: 111 SLIHCYLCAKNHPNARILFDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDG 170

Query: 145 ---VKPDNFTFTSVLSA----LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
              V PD +TFT V+++    ++LI  E      +H  VVKSG   F S L    SV   
Sbjct: 171 PMQVVPDEYTFTFVITSCSHQISLIYGE-----IVHGMVVKSG---FESNLYVGNSVINM 222

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C      S  + M  AR+VF++M ERD  SWT+++ GY K+  +D A E  + M     V
Sbjct: 223 C------SVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDV 276

Query: 258 AWNALISGYV--HRELKMLML--------RIQLDEFTYTSVISACANSGLFRLGKQVHAY 307
           +W  +ISG++   R  + L          R+  +E     V+SACA+ G    G  +H Y
Sbjct: 277 SWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLY 336

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367
           + +   + +   S     AL+ +Y KCG+++ A  +FN + +RD++S+ +++S       
Sbjct: 337 IDKIGIRQSSNIS----TALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMIS------- 385

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
                                   GL+ +G G++ L++F QM  E   P +    G +  
Sbjct: 386 ------------------------GLSYHGLGKDALRVFYQMLDENVMPNEITILGVLNG 421

Query: 428 CAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSV 485
           C+  G +E G  + A +    G    +      I +  R G +E A  V  TMP   D V
Sbjct: 422 CSHSGLVEEGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIV 481

Query: 486 SWNAMIAALGQHGNGARAIELYEQML 511
            W A+++A   H N    + L EQ++
Sbjct: 482 IWRALLSASRIHHN----VNLGEQII 503



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 149/328 (45%), Gaps = 41/328 (12%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           VH  ++ SGF+   ++ N +I++     ++  AR +F+++ + D+ + T+L+  Y+    
Sbjct: 200 VHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGE 259

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD-VKPDNFTFTSV 155
           +  A E+FN  P+  R+ V +  MI+ +        A+  F +M  DD V P+      V
Sbjct: 260 MDRACELFNMMPV--RNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLVCV 317

Query: 156 LSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARR 215
           LSA A +   + Q   +H  + K G    +++  ALI +Y KC           +  A R
Sbjct: 318 LSACAHLGALD-QGNWIHLYIDKIGIRQSSNISTALIDMYAKC---------GRIDCASR 367

Query: 216 VFDEMPERDELSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
           VF+ + +RD LS+T+M++G   +    DA R F   + ENV                   
Sbjct: 368 VFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENV------------------- 408

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
                 +E T   V++ C++SGL   G  +   L   E+       +      + L  + 
Sbjct: 409 ----MPNEITILGVLNGCSHSGLVEEGSSI---LANMESLWGIAPKIEHYGCYIDLLGRA 461

Query: 335 GKVNEARDIFNQMP-ERDLVSWNAILSA 361
           G +  A ++   MP E D+V W A+LSA
Sbjct: 462 GYLERALEVVKTMPMEPDIVIWRALLSA 489


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 239/620 (38%), Positives = 340/620 (54%), Gaps = 69/620 (11%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           Q+H  ++K+ + L +  L+ + SV        F SS S    A+ +F  +   +   W T
Sbjct: 33  QLHAHLLKTNSPLSSLPLSRVASV------CAFNSSFSY---AKLIFQLLDASEVTHWNT 83

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
            +            R F +G S       +A+   Y  RE       I  D +T + V+ 
Sbjct: 84  CL------------RSFAEGDSPA-----DAISLFYRLREFD-----ISPDHYTCSFVLK 121

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           AC+     R GK VH Y+     K   + ++ + N +V LY  CG++  AR +F++MP+R
Sbjct: 122 ACSRLLDVRNGKIVHGYV----EKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQR 177

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           D+++WN +++  V  G  + A  LF  M ERN+ SWT MI G AQ G  +E + LF +M 
Sbjct: 178 DVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEME 237

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
             G  P +      + +CA +G L  GR++H     SGY+ ++   N LI MY +CG +E
Sbjct: 238 DAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLE 297

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
            A  +F+ M     VSW+AMIA L  HG    A+ L+ +M+  G+ P+ +TF+ +L AC+
Sbjct: 298 DACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACS 357

Query: 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590
           H G+V++GR+YF +M   YGI P  +HY   +DL  RAG   EA + I ++P  P+  +W
Sbjct: 358 HMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVW 417

Query: 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650
            ALL GC++H N+ L  +A   L +L P + G YV+LSN+YA  GRW+D ARVRKLMRDR
Sbjct: 418 GALLGGCKVHKNVKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDR 477

Query: 651 GVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDM 710
           G       +W                           E+L+  M+  GYVP+T  VL DM
Sbjct: 478 G-------TW---------------------------EKLLQRMKLKGYVPNTSVVLLDM 503

Query: 711 ESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVV 770
           E DQKE  L  HSEKLAV FGL+K   G  +R++KNLR+C DCH A K +S V  REIVV
Sbjct: 504 EEDQKEKFLYRHSEKLAVVFGLIKTTPGTVIRIMKNLRVCEDCHAALKIISVVSTREIVV 563

Query: 771 RDGKRFHHFRDGKCSCGDYW 790
           RD  RFH F++G CSCGDYW
Sbjct: 564 RDRNRFHCFKNGSCSCGDYW 583



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 175/418 (41%), Gaps = 70/418 (16%)

Query: 21  QLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPD 80
           +L D RN       + VH ++   G +    + N ++ +Y    ++  AR +FD++PQ D
Sbjct: 125 RLLDVRN------GKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRD 178

Query: 81  IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
           ++    +IA      + + A ++F + P   R+   + +MI  Y+       AI+LF +M
Sbjct: 179 VITWNIMIARLVKMGDAEGAYKLFAEMP--ERNVRSWTSMIGGYAQCGKSKEAIDLFLEM 236

Query: 141 RRDDVKPDNFTFTSVLSALA----LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
               + P+  T  +VL A A    L++       ++H    +SG      V N LI +YV
Sbjct: 237 EDAGLLPNEVTVVAVLVACADMGNLVLGR-----RIHDFSNRSGYEKNIRVCNTLIDMYV 291

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           KC           +  A R+FD M ER  +SW+ M+ G   +   + A    + M  N G
Sbjct: 292 KC---------GCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMI-NTG 341

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KP 315
           V  NA+                     T+  ++ AC++ G+   G++  A + R     P
Sbjct: 342 VKPNAV---------------------TFIGILHACSHMGMVEKGRKYFASMTRDYGIVP 380

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA---YVSAGLIDEA 371
             E        +V L+ + G + EA +    MP   + V W A+L     + +  L +EA
Sbjct: 381 RIEHY----GCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLAEEA 436

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGL-------------KLFSQMRLEGFKP 416
                 +   N   + V+ +  A+ G  E+               KL  +M+L+G+ P
Sbjct: 437 TRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGTWEKLLQRMKLKGYVP 494


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/675 (34%), Positives = 361/675 (53%), Gaps = 49/675 (7%)

Query: 117 YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTV 176
           YN  I  +    N   A+EL     + D++    T+ SVL  L   ++  +   ++H ++
Sbjct: 71  YNIEICRFCELGNLRRAMELINQSPKPDLELR--TYCSVLQ-LCADLKSIQDGRRIH-SI 126

Query: 177 VKSGTGLFTSVLNA-LISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
           ++S       VL + L+ +YV C           +   RR+FD++       W  +M GY
Sbjct: 127 IQSNDVEVDGVLGSKLVFMYVTCGD---------LREGRRIFDKVANEKVFLWNLLMNGY 177

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
            K      +      M E +G+         V    K+       D  ++ S+IS   ++
Sbjct: 178 AKIGNFRESLSLFKRMRE-LGIR-------RVESARKLFDELGDRDVISWNSMISGYVSN 229

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
           GL   G  +   +L           L +N  L T                 M   +L   
Sbjct: 230 GLSEKGLDLFEQMLL----------LGINTDLAT-----------------MVSVELTLN 262

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           N +L  Y  +G ++ A  +FE M ER+++SWT MI+G A+ G  +  ++LF +M  E   
Sbjct: 263 NCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLF 322

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P     A  + +CA L ALE G+++H  ++ +G+       NAL+ MY +CG +  A  +
Sbjct: 323 PNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLL 382

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           F+ +P  D VSW  MIA  G HG G+ AI  + +M   GI PD ++F+++L AC+H+GL+
Sbjct: 383 FDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLL 442

Query: 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
            EG  +F  M     I P  +HYA  +DLL RAG  S+A   I  +P +P A IW ALL 
Sbjct: 443 DEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLC 502

Query: 596 GCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKE 655
           GCRI+ ++ L  + AE +F+L P + G YVLL+N+YA   +W++  ++R+ +  RG++K 
Sbjct: 503 GCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKN 562

Query: 656 PGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQK 715
           PGCSWIE+  KVH+F+  D++HP A  +   L++    M++ G+ P  ++ L   +  +K
Sbjct: 563 PGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEK 622

Query: 716 EYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKR 775
           E AL  HSEK+A+AFG++ LP G TVRV KNLR+CGDCH   KFMSK+V R+I++RD  R
Sbjct: 623 EMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNR 682

Query: 776 FHHFRDGKCSCGDYW 790
           FHHF+DG CSC  +W
Sbjct: 683 FHHFKDGSCSCRGHW 697



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 119/500 (23%), Positives = 198/500 (39%), Gaps = 122/500 (24%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y S LQLC     I     R +H+ + S+  +    + ++L+ +Y     L   R +FD+
Sbjct: 104 YCSVLQLCADLKSIQD--GRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDK 161

Query: 76  IPQPDIVARTTLIAAYSASDN------------------VKLAREMFNKTPLKMRDTVFY 117
           +    +     L+  Y+   N                  V+ AR++F++  L  RD + +
Sbjct: 162 VANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDE--LGDRDVISW 219

Query: 118 NAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVV 177
           N+MI+ Y  N      ++LF  M    +  D  T  SV   L                  
Sbjct: 220 NSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLN----------------- 262

Query: 178 KSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK 237
                      N L+ +Y K  +         + +A +VF+ M ER  +SWT+M+ GY  
Sbjct: 263 -----------NCLLDMYSKSGN---------LNSAIQVFETMGERSVVSWTSMIAGY-- 300

Query: 238 NDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGL 297
                 ARE L  MS              V    +M    +  +  T   ++ ACA+   
Sbjct: 301 ------AREGLSDMS--------------VRLFHEMEKEDLFPNSITMACILPACASLAA 340

Query: 298 FRLGKQVHAYLLRTEAKPTPEFSLP--VNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
              G+++H ++LR        FSL   V NALV +Y KCG +  AR +F+ +PE+DLVSW
Sbjct: 341 LERGQEIHGHILRN------GFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSW 394

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
             +++ Y                                 +GYG E +  F++MR  G +
Sbjct: 395 TVMIAGY-------------------------------GMHGYGSEAIAAFNEMRNSGIE 423

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA-LITMYARCGVVEAANC 474
           P + +F   + +C+  G L+ G      + ++      S   A ++ + AR G +  A  
Sbjct: 424 PDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYK 483

Query: 475 VFNTMP-NVDSVSWNAMIAA 493
               MP   D+  W A++  
Sbjct: 484 FIKMMPIEPDATIWGALLCG 503


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/741 (31%), Positives = 380/741 (51%), Gaps = 66/741 (8%)

Query: 61  CKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAM 120
           C + K ++ +++   +P   ++AR            +  A  +F+ TP   R    + ++
Sbjct: 49  CAAKKAIHRQSVRGCVPSSSVIAR-----------GLHNAHRVFDGTP--TRSLPAWTSI 95

Query: 121 ITAYSHNSNGHAAIELFRDMRRD--DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVK 178
           I+  +        +  F +M  +     P+ F    VL   A + + E    ++H  +++
Sbjct: 96  ISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLRCCAGLGDVESG-RRIHGWILR 154

Query: 179 SGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKN 238
           SG      + NA++ +Y KC            G ARR F  M ++D  SW  ++   +++
Sbjct: 155 SGVCPDVVLCNAVLDMYAKCGDH---------GRARRAFGAMAQKDATSWNIVIRACLQD 205

Query: 239 DYLDAAREFLDGMSENVGVAWNALISGYVH---------RELKMLMLRIQLDEFTYTSVI 289
             L  A +  D  S     +WN ++SG +          R  +M+   +    +TY+ V 
Sbjct: 206 GDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYTYSMVF 265

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
           +         LG+Q+H  ++        E    V  +L+ +Y KCG++  A  IF++  +
Sbjct: 266 ALAGLLSSRDLGRQLHGRVV----VAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSD 321

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
                                         E    +W+ M++G  QNG  EE L+ F +M
Sbjct: 322 ----------------------------FTEDRQFAWSTMVAGYVQNGREEEALEFFRRM 353

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
             EG     +      ++CA  G +E GRQ+H  +   G+       +A++ MY++ G +
Sbjct: 354 LREGVPAGQFILTSVASACANAGMVEQGRQVHGFVEKLGHRFDAPLASAIVDMYSKSGSL 413

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           E A  +F +    +   W  M+ +   HG G  A+E++ +M  E I+P+ IT + VLSAC
Sbjct: 414 EDACRIFRSAQTKNVALWTTMLCSYASHGQGRMALEIFSRMKAEKIMPNEITLVAVLSAC 473

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
           +H+GLV +G  YF  M   YGI P  +HY   +DL  RAG   +AK+ I+       A +
Sbjct: 474 SHSGLVSDGYHYFNLMQEEYGIVPNTEHYNCMVDLYGRAGLLDKAKNFIEENKISHEAVV 533

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
           W+ LL+ CR+H +I+    A+E+L QL  + AG+YVL+SNMYA   +W D  ++R  M++
Sbjct: 534 WKTLLSACRLHKHIEYAQLASEKLVQLEQYDAGSYVLMSNMYATNNKWLDTFKLRSSMKE 593

Query: 650 RGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHD 709
           R V+K+PG SWI + N VH F+  DT+HP +  +Y YLE+L+  ++++GY   T  V+HD
Sbjct: 594 RRVRKQPGQSWIHLKNVVHRFVALDTSHPRSAEIYAYLEKLMERLKEMGYTSRTDLVVHD 653

Query: 710 MESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIV 769
           +E +Q+E +L  HSEKLA+AFG++  P G  +R+ KNLR+C DCH A KF+++   REIV
Sbjct: 654 IEEEQRETSLKFHSEKLAIAFGIISTPVGTALRIFKNLRVCEDCHEAIKFITRATDREIV 713

Query: 770 VRDGKRFHHFRDGKCSCGDYW 790
           VRD  RFHHF+DG+CSC D+W
Sbjct: 714 VRDLYRFHHFKDGQCSCEDFW 734



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 119/506 (23%), Positives = 216/506 (42%), Gaps = 83/506 (16%)

Query: 17  ASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEI 76
           A  L+ C     + S   R +H  ++ SG  P   + N ++D+Y K      AR  F  +
Sbjct: 130 AGVLRCCAGLGDVES--GRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAM 187

Query: 77  PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
            Q D  +   +I A     ++  A ++F+++ L  RD   +N +++    + +   A+  
Sbjct: 188 AQKDATSWNIVIRACLQDGDLVGATQLFDESSL--RDVSSWNTIVSGLMRHGHTTEALGR 245

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
            + M R  V   N+T++ V  ALA ++       Q+H  VV +       V  +L+ +Y 
Sbjct: 246 LQQMVRAGVTFSNYTYSMVF-ALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYC 304

Query: 197 KCVSSPFVSSRSLMGAARRVFD---EMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
           KC           M +A  +FD   +  E  + +W+TM+ GYV+N   + A EF      
Sbjct: 305 KC---------GEMESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFR---- 351

Query: 254 NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
                             +ML   +   +F  TSV SACAN+G+   G+QVH ++     
Sbjct: 352 ------------------RMLREGVPAGQFILTSVASACANAGMVEQGRQVHGFV----E 389

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
           K    F  P+ +A+V +Y K G + +A  IF     +++  W  +L +Y S         
Sbjct: 390 KLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYAS--------- 440

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
                                 +G G   L++FS+M+ E   P +      +++C+  G 
Sbjct: 441 ----------------------HGQGRMALEIFSRMKAEKIMPNEITLVAVLSACSHSGL 478

Query: 434 LENGRQLHAQLVHSGYD--SSLSAGNALITMYARCGVVE-AANCVFNTMPNVDSVSWNAM 490
           + +G   +  L+   Y    +    N ++ +Y R G+++ A N +     + ++V W  +
Sbjct: 479 VSDGYH-YFNLMQEEYGIVPNTEHYNCMVDLYGRAGLLDKAKNFIEENKISHEAVVWKTL 537

Query: 491 IAALGQHGNGARAIELYEQMLKEGIL 516
           ++A   H    + IE Y Q+  E ++
Sbjct: 538 LSACRLH----KHIE-YAQLASEKLV 558


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/569 (38%), Positives = 317/569 (55%), Gaps = 49/569 (8%)

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLR---------IQLD 281
           ++  YVK + L+ A+   D M E   V+W  +IS Y + +L    +R         +  +
Sbjct: 326 LINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPN 385

Query: 282 EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEAR 341
            FT++SV+ AC    L+ L KQ+H++++                          KV    
Sbjct: 386 MFTFSSVLRACER--LYDL-KQLHSWIM--------------------------KVGLES 416

Query: 342 DIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEE 401
           D+F +         +A++  Y   G + EA  +F  M   + + W  +I+  AQ+  G+E
Sbjct: 417 DVFVR---------SALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDE 467

Query: 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALIT 461
            L L+  MR  GF          + +C  L  LE GRQ H  ++   +D  L   NAL+ 
Sbjct: 468 ALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLK--FDQDLILNNALLD 525

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           MY +CG +E A  +FN M   D +SW+ MIA L Q+G    A+ L+E M  +G  P+ IT
Sbjct: 526 MYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHIT 585

Query: 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581
            L VL AC+HAGLV EG  YF +M+  YGI PG +HY   +DLL RA K  +   +I  +
Sbjct: 586 ILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEM 645

Query: 582 PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAA 641
             +P    W  LL  CR   N+DL   AA+++ +L P   G YVLLSN+YA   RW+D A
Sbjct: 646 NCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAYVLLSNIYAISKRWNDVA 705

Query: 642 RVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVP 701
            VR+ M+ RG++KEPGCSWIEV+ ++H F++ D +HP+   + + L Q +  +   GYVP
Sbjct: 706 EVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKSHPQIDEINRQLNQFICRLAGAGYVP 765

Query: 702 DTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMS 761
           DT FVL D+E +Q+E +L  HSEKLA+ FG+M  P   T+R+ KNL+ICGDCH   K ++
Sbjct: 766 DTNFVLQDLEGEQREDSLRYHSEKLAIVFGIMSFPKEKTIRIWKNLKICGDCHKFAKLIA 825

Query: 762 KVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           ++  R IV+RD  R+HHF+DG CSCGDYW
Sbjct: 826 ELEQRHIVIRDPIRYHHFQDGVCSCGDYW 854



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 110/391 (28%), Positives = 173/391 (44%), Gaps = 85/391 (21%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + VH H+ S+G+ P+  + N LI++Y K   L  A+ LFD++P+               
Sbjct: 304 GKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDKMPE--------------- 348

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                             R+ V +  MI+AYS+      A+ L   M RD V P+ FTF+
Sbjct: 349 ------------------RNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFS 390

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG-- 211
           SVL A     E      Q+H  ++K G      V +ALI VY K            MG  
Sbjct: 391 SVLRA----CERLYDLKQLHSWIMKVGLESDVFVRSALIDVYSK------------MGEL 434

Query: 212 -AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
             A +VF EM   D + W +++  + ++   D A                      +H  
Sbjct: 435 LEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEA----------------------LHLY 472

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
             M  +    D+ T TSV+ AC +  L  LG+Q H ++L+ +        L +NNAL+ +
Sbjct: 473 KSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLKFDQ------DLILNNALLDM 526

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y KCG + +A+ IFN+M ++D++SW+ +++     G   EA +LFE+M+ +      + I
Sbjct: 527 YCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITI 586

Query: 391 SGL----AQNGYGEEGLKLFSQM-RLEGFKP 416
            G+    +  G   EG   F  M  L G  P
Sbjct: 587 LGVLFACSHAGLVNEGWYYFRSMNNLYGIDP 617



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 90/203 (44%), Gaps = 5/203 (2%)

Query: 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALIT 461
            + +   M   G       ++  I  C   GA+  G+++H  +  +GY       N LI 
Sbjct: 269 AMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILIN 328

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           MY +  ++E A  +F+ MP  + VSW  MI+A        RA+ L   M ++G++P+  T
Sbjct: 329 MYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFT 388

Query: 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581
           F +VL AC     +K+   +   +    G+       +  ID+  + G+  EA  V   +
Sbjct: 389 FSSVLRACERLYDLKQLHSWIMKV----GLESDVFVRSALIDVYSKMGELLEALKVFREM 444

Query: 582 PFKPSAPIWEALLAGCRIHGNID 604
               S  +W +++A    H + D
Sbjct: 445 MTGDSV-VWNSIIAAFAQHSDGD 466


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 256/783 (32%), Positives = 407/783 (51%), Gaps = 112/783 (14%)

Query: 12  LANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYART 71
           LA  +AS L+      P+     + +HA +I+SG      + N L++ Y      VY   
Sbjct: 23  LAQSHASILRKLKDLKPL-----QQIHAQIITSGLTHNTFLSNSLMNAY------VYCGL 71

Query: 72  LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           L D                         A+++F+ TP K  + V +  +I+  + N    
Sbjct: 72  LAD-------------------------AKQIFHHTPCK--NVVSWTILISGLAKNDCFV 104

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALA---LIVEEEKQCMQMHCTVVKSGTGLFTSVL 188
            AI++FR+M   + KP+  T +SVL A A   LI    +    +HC  V+ G      V 
Sbjct: 105 EAIDVFREMTMGNFKPNAVTISSVLPAFANLGLI----RIAKSVHCFWVRGGFEGNVFVE 160

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
            AL+ +Y         S    MG AR++F+ M ER+ +SW  +++GY  + + + A +  
Sbjct: 161 TALVDMY---------SKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLF 211

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
           + M                 R   +L     +D +T  S+I A  + G  ++G  +H ++
Sbjct: 212 NLM-----------------RRKGLL-----VDFYTIMSLIPASLSVGCLQVGTGIHGFI 249

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
           +RT  +        +  AL+ +Y     V++A  +F++M  +D+ +W             
Sbjct: 250 IRTGYENDKH----IKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAW------------- 292

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RLEGFKPCDYAFAGAITS 427
                             T+M++G +   + +  +K F++M  ++  K       G ++S
Sbjct: 293 ------------------TLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSS 334

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
           C+  GAL+ GR++HA  + + + +++  G+A+I MYA CG +E A   F  M   D V W
Sbjct: 335 CSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCW 394

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
           NAMIA  G +G G  AI+L+ QM   G+ PD  TF++VL AC+HAG+V EG + F  M  
Sbjct: 395 NAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVK 454

Query: 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
                P   HYA  ID+L RAG+   A   I+++PF+P   ++  LL  CRIHGNI LG 
Sbjct: 455 TSHDIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGH 514

Query: 608 QAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKV 667
           + ++++F++ P+ AG YVLLSNMYA  G W+     R  +R + +KK+PG S IE++ ++
Sbjct: 515 EISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRLKKDPGFSSIEINQEI 574

Query: 668 HVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLA 727
           + F+  +  HP+   +   L+ L+L+++K GYVP+T  +L D+  D K+  L  HSEK+A
Sbjct: 575 YTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMA 634

Query: 728 VAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCG 787
           +AFGLM+   G  +R+ KNLR C DCH+A KF+SKV GR +V++D  RFH F+DG CSC 
Sbjct: 635 IAFGLMRTKPGTIIRITKNLRTCNDCHSASKFVSKVFGRVLVIKDANRFHVFQDGVCSCR 694

Query: 788 DYW 790
           DYW
Sbjct: 695 DYW 697


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/580 (36%), Positives = 336/580 (57%), Gaps = 28/580 (4%)

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           R +F ++   +  +WT ++  Y     L  A  F   M +                    
Sbjct: 63  RLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKR------------------- 103

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
              R+    FT++++ SACA      LG Q+HA  L      +    L VNNA++ +Y K
Sbjct: 104 ---RVSPISFTFSALFSACAAVRHSALGAQLHAQTLLLGGFSS---DLYVNNAVIDMYVK 157

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
           CG +  AR +F++MPERD++SW  ++ AY   G +  A+ LF+ +  +++++WT M++G 
Sbjct: 158 CGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGY 217

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD--S 451
           AQN    + L++F ++R EG +  +    G I++CA LGA +    +      SG+    
Sbjct: 218 AQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGD 277

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
           ++  G+ALI MY++CG VE A  VF  M   +  S+++MI     HG    AI+L+  ML
Sbjct: 278 NVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDML 337

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571
           + G+ P+ +TF+ VL+AC+HAGLV +G++ F +M   YG+ P  + YA   DLL RAG  
Sbjct: 338 ETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYL 397

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631
            +A  +++++P +    +W ALL    +HGN D+   A+++LF+L P + G Y+LLSN Y
Sbjct: 398 EKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASKRLFELEPDNIGNYLLLSNTY 457

Query: 632 ANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNK-VHVFLVDDTAHPEAQAVYKYLEQL 690
           A+ GRWDD ++VRKL+R++ +KK PG SW+E  N  +H F+  D +HP+   + K L  L
Sbjct: 458 ASAGRWDDVSKVRKLLREKNLKKNPGWSWVEAKNGMIHKFVAGDVSHPKINEIKKELNDL 517

Query: 691 VLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRIC 750
           +  ++ +GY P+   + + +   +K   L  HSEKLA+AFGL+    G+T++++KNLRIC
Sbjct: 518 LERLKGIGYQPNLSSLPYGINDREKRLLLMAHSEKLALAFGLLSTDVGSTIKIMKNLRIC 577

Query: 751 GDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            DCH      SKV GR+IVVRD  RFHHF +G CSC ++W
Sbjct: 578 EDCHIVMCGASKVTGRKIVVRDNTRFHHFLNGACSCSNFW 617



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 147/513 (28%), Positives = 226/513 (44%), Gaps = 101/513 (19%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLV----YARTLFDEIPQPDIVARTTLIA 89
           A+ VHA +     +   +++ +L+ +   +L  V    Y R LF ++  P+  A T LI 
Sbjct: 24  AKEVHAQIYIKNLQQSSYVLTKLLRL-VTALPHVPLHSYPRLLFSQLHTPNPFAWTALIR 82

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
           AY+             + PL                       A+  +  MR+  V P +
Sbjct: 83  AYAL------------RGPLSQ---------------------ALSFYSSMRKRRVSPIS 109

Query: 150 FTFTSVLSALALIVEEEKQCMQMHC-TVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
           FTF+++ SA A  V       Q+H  T++  G      V NA+I +YVKC S        
Sbjct: 110 FTFSALFSACA-AVRHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGS-------- 160

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
            +  AR VFDEMPERD +SWT ++  Y +   + AAR+  DG+     V W A+++GY  
Sbjct: 161 -LRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQ 219

Query: 269 RELKMLMLR---------IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP-- 317
             + M  L          +++DE T   VISACA     +LG   +A  +R  A+ +   
Sbjct: 220 NAMPMDALEVFRRLRDEGVEIDEVTLVGVISACA-----QLGASKYANWIRDIAESSGFG 274

Query: 318 -EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
              ++ V +AL+ +Y KCG V EA D+F  M ER++ S+++                   
Sbjct: 275 VGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSS------------------- 315

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
                       MI G A +G     +KLF  M   G KP    F G +T+C+  G ++ 
Sbjct: 316 ------------MIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQ 363

Query: 437 GRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAAL 494
           G+QL A +    G   +      +  + +R G +E A  +  TMP   D   W A++ A 
Sbjct: 364 GQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGAS 423

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
             HGN   A E+  + L E + PD I    +LS
Sbjct: 424 HVHGNPDVA-EIASKRLFE-LEPDNIGNYLLLS 454



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 111/395 (28%), Positives = 190/395 (48%), Gaps = 50/395 (12%)

Query: 31  SSLARSVHAH-MISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           S+L   +HA  ++  GF    ++ N +ID+Y K   L  AR +FDE+P+ D+++ T LI 
Sbjct: 125 SALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIV 184

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
           AY+   +++ AR++F+  P+K  D V + AM+T Y+ N+    A+E+FR +R + V+ D 
Sbjct: 185 AYTRIGDMRAARDLFDGLPVK--DMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDE 242

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL--NALISVYVKCVSSPFVSSR 207
            T   V+SA A +    K    +      SG G+  +VL  +ALI +Y KC +       
Sbjct: 243 VTLVGVISACAQL-GASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGN------- 294

Query: 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAA-REFLDGMSENVGVAWNALISGY 266
             +  A  VF  M ER+  S+++M+ G+  +    AA + F D                 
Sbjct: 295 --VEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYD----------------- 335

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNN 325
                 ML   ++ +  T+  V++AC+++GL   G+Q+ A + +     PT E       
Sbjct: 336 ------MLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAELY----A 385

Query: 326 ALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEA----KSLFEAMRE 380
            +  L  + G + +A  +   MP E D   W A+L A    G  D A    K LFE +  
Sbjct: 386 CMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASKRLFE-LEP 444

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
            N+ ++ ++ +  A  G  ++  K+   +R +  K
Sbjct: 445 DNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLK 479



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 149/342 (43%), Gaps = 46/342 (13%)

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS-------AYVSAGLIDEAKSLFEAMR 379
           +V +  +C  +N+A+++  Q+  ++L   + +L+       A     L    + LF  + 
Sbjct: 11  VVRILERCSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLH 70

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
             N  +WT +I   A  G   + L  +S MR     P  + F+   ++CA +     G Q
Sbjct: 71  TPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQ 130

Query: 440 LHAQ-LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           LHAQ L+  G+ S L   NA+I MY +CG +  A  VF+ MP  D +SW  +I A  + G
Sbjct: 131 LHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIG 190

Query: 499 N--GAR-----------------------------AIELYEQMLKEGILPDRITFLTVLS 527
           +   AR                             A+E++ ++  EG+  D +T + V+S
Sbjct: 191 DMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVIS 250

Query: 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHY--ARFIDLLCRAGKFSEAKDVIDSLPFKP 585
           AC   G  K    +   +    G   G++    +  ID+  + G   EA DV   +  + 
Sbjct: 251 ACAQLGASKYA-NWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRER- 308

Query: 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQ--LMPHHAGTYV 625
           +   + +++ G  IHG     I+    + +  + P+H  T+V
Sbjct: 309 NVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHV-TFV 349



 Score = 48.9 bits (115), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 93/232 (40%), Gaps = 23/232 (9%)

Query: 433 ALENGRQLHAQLVHSGYDSS---LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
           +L   +++HAQ+       S   L+    L+T      +      +F+ +   +  +W A
Sbjct: 20  SLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHTPNPFAWTA 79

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC---NHAGLVKEGRRYFETMH 546
           +I A    G  ++A+  Y  M K  + P   TF  + SAC    H+ L  +       +H
Sbjct: 80  LIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQ-------LH 132

Query: 547 GPYGIPPG--EDHYAR--FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
               +  G   D Y     ID+  + G    A+ V D +P +     W  L+      G+
Sbjct: 133 AQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVIS-WTGLIVAYTRIGD 191

Query: 603 IDLGIQAAEQLFQLMP-HHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653
               ++AA  LF  +P     T+  +   YA      DA  V + +RD GV+
Sbjct: 192 ----MRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVE 239


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/622 (35%), Positives = 339/622 (54%), Gaps = 65/622 (10%)

Query: 169 CMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSW 228
           C  +H  V+KS       + + L+S+Y K               A+R+FDEMP RD +SW
Sbjct: 158 CSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDE---------DAQRLFDEMPNRDLVSW 208

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSV 288
            ++M+G     YL A       M    G                      Q +E T  SV
Sbjct: 209 NSLMSGLSGRGYLGACLNAFCRMRTESGR---------------------QPNEVTLLSV 247

Query: 289 ISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
           +SACA  G    GK +H  ++                       K G   +A+ +     
Sbjct: 248 VSACAXMGALDEGKSLHGVVV-----------------------KLGMSGKAKVV----- 279

Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQ 408
                  N++++ Y   G +D A  LFE M  R+L+SW  M+     NGY E+G+ LF+ 
Sbjct: 280 -------NSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNL 332

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
           M+  G  P        + +C   G       +HA +   G+++ +    AL+ +YA+ G 
Sbjct: 333 MKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGR 392

Query: 469 VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
           + A+  +F  + + D+++W AM+A    H  G  AI+L++ M+KEG+  D +TF  +LSA
Sbjct: 393 LNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSA 452

Query: 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
           C+H+GLV+EG++YFE M   Y + P  DHY+  +DLL R+G+  +A ++I S+P +PS+ 
Sbjct: 453 CSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSG 512

Query: 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648
           +W ALL  CR++GN++LG + AEQL  L P     Y++LSN+Y+  G W  A++VR LM+
Sbjct: 513 VWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRXASKVRXLMK 572

Query: 649 DRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLH 708
           +R + + PGCS+IE  NK+H F+V D  HP +  ++  LE+L+ ++ + G  P T+FVLH
Sbjct: 573 ERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIXEAGCAPKTEFVLH 632

Query: 709 DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREI 768
           D++ + K   ++ HSEKLA+AFGL+    G  + + KNLRICGDCH+  KF S +  R I
Sbjct: 633 DIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTI 692

Query: 769 VVRDGKRFHHFRDGKCSCGDYW 790
           ++RD KRFHHF DG CSC DYW
Sbjct: 693 IIRDSKRFHHFADGLCSCRDYW 714



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 146/349 (41%), Gaps = 75/349 (21%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            +S+H  ++  G   +  ++N LI++Y K   L  A  LF+E+P                
Sbjct: 260 GKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMP---------------- 303

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                            +R  V +N+M+  ++HN      ++LF  M+R  + PD  T  
Sbjct: 304 -----------------VRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMV 346

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           ++L A        +Q   +H  + + G      +  AL+++Y K            + A+
Sbjct: 347 ALLRACT-DTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKL---------GRLNAS 396

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
             +F+E+ +RD ++WT M+ GY  +     A +  D M +                    
Sbjct: 397 EDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKE------------------- 437

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGK---QVHAYLLRTEAKPTPEFSLPVNNALVTL 330
               +++D  T+T ++SAC++SGL   GK   ++ + + R E +      L   + +V L
Sbjct: 438 ---GVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPR------LDHYSCMVDL 488

Query: 331 YWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
             + G++ +A ++   MP E     W A+L A    G ++  K + E +
Sbjct: 489 LGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQL 537



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 95/198 (47%), Gaps = 16/198 (8%)

Query: 424 AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
           AI+SC  +        +HA+++ S   S    G+ L++MY + G  E A  +F+ MPN D
Sbjct: 148 AISSCTSVSYCS---AIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRD 204

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKE-GILPDRITFLTVLSACNHAGLVKEGRRYF 542
            VSWN++++ L   G     +  + +M  E G  P+ +T L+V+SAC   G + EG+   
Sbjct: 205 LVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGK--- 261

Query: 543 ETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI 599
            ++HG     G+          I++  + G    A  + + +P + S   W +++     
Sbjct: 262 -SLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVR-SLVSWNSMVVIHNH 319

Query: 600 HGNIDLGIQAAEQLFQLM 617
           +G  + G+     LF LM
Sbjct: 320 NGYAEKGM----DLFNLM 333


>gi|414876780|tpg|DAA53911.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 491

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/458 (44%), Positives = 294/458 (64%), Gaps = 1/458 (0%)

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           K G+   A+ I   +   D +  NA++  Y   G++D AK++F    ++  +SWT +I+G
Sbjct: 35  KIGRQIHAQLILLGLTLEDFMG-NALIDMYSKCGMLDAAKTIFANKSDKTAISWTALITG 93

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
             QNG  EE L+LF  MR  G  P     +  I S + LG +  GRQLHA L  SG+ SS
Sbjct: 94  CVQNGQHEEALQLFCNMRRAGLSPDRATCSSIIKSSSSLGVIGIGRQLHAYLTTSGHMSS 153

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           + +G+AL+ MYA+CG ++ A   FN MP  +S++WNA+I+A  Q+G    AI +++ ML 
Sbjct: 154 VFSGSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVISAYAQYGQAKNAIRMFDSMLH 213

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
            G  PD +TFL+VL+AC+H GL +E  +YF+ M     + P ++HY+  ID L RAG F 
Sbjct: 214 CGFCPDPVTFLSVLAACSHNGLAEECMKYFDLMRYYNSMSPWKEHYSCVIDALGRAGCFD 273

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632
           + + V+D +PF+    IW ++L  CRI+GN DL   AAE LF ++P  A  YV+LSN+YA
Sbjct: 274 KIQKVLDEMPFEADPVIWSSILHSCRIYGNQDLATVAAENLFTMVPTDATAYVILSNIYA 333

Query: 633 NLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVL 692
             G W+ AARV+K+MRDRGV+KE G SW+E+  K+++F  +D  +P    + + LE+L  
Sbjct: 334 KAGNWEGAARVKKIMRDRGVRKESGNSWVEIKQKIYMFSSNDHTNPMIDEIKEELERLYE 393

Query: 693 EMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGD 752
           EM K GY PDT   LH +++ QK  +L  HSE+LA+AF L+  P G  + V+KNL  C D
Sbjct: 394 EMDKQGYEPDTSCALHMVDNKQKLESLKYHSERLAIAFALINTPPGTPITVMKNLSACLD 453

Query: 753 CHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           CH A K +SK+V R+I+VRD +RFHHF+DG CSCGDYW
Sbjct: 454 CHAAIKMISKIVNRDIIVRDSRRFHHFKDGFCSCGDYW 491



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 138/282 (48%), Gaps = 40/282 (14%)

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           A++LFR+M+          F S+LS +A  + + K   Q+H  ++  G  L   + NALI
Sbjct: 2   ALQLFREMQTLSFDRHTLPFASLLS-VAGALPDIKIGRQIHAQLILLGLTLEDFMGNALI 60

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
            +Y KC          ++ AA+ +F    ++  +SWT ++TG V+N   + A +    M 
Sbjct: 61  DMYSKC---------GMLDAAKTIFANKSDKTAISWTALITGCVQNGQHEEALQLFCNMR 111

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
                                    +  D  T +S+I + ++ G+  +G+Q+HAY L T 
Sbjct: 112 R----------------------AGLSPDRATCSSIIKSSSSLGVIGIGRQLHAY-LTTS 148

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
              +  FS    +AL+ +Y KCG ++EA   FN+MPE++ ++WNA++SAY   G    A 
Sbjct: 149 GHMSSVFS---GSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVISAYAQYGQAKNAI 205

Query: 373 SLFEAMRERNL----LSWTVMISGLAQNGYGEEGLKLFSQMR 410
            +F++M         +++  +++  + NG  EE +K F  MR
Sbjct: 206 RMFDSMLHCGFCPDPVTFLSVLAACSHNGLAEECMKYFDLMR 247



 Score = 92.4 bits (228), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 108/221 (48%), Gaps = 12/221 (5%)

Query: 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALIT 461
            L+LF +M+   F      FA  ++    L  ++ GRQ+HAQL+  G       GNALI 
Sbjct: 2   ALQLFREMQTLSFDRHTLPFASLLSVAGALPDIKIGRQIHAQLILLGLTLEDFMGNALID 61

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           MY++CG+++AA  +F    +  ++SW A+I    Q+G    A++L+  M + G+ PDR T
Sbjct: 62  MYSKCGMLDAAKTIFANKSDKTAISWTALITGCVQNGQHEEALQLFCNMRRAGLSPDRAT 121

Query: 522 FLTVLSACNHAGLVKEGRR---YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVI 578
             +++ + +  G++  GR+   Y  T      +  G    +  +D+  + G   EA    
Sbjct: 122 CSSIIKSSSSLGVIGIGRQLHAYLTTSGHMSSVFSG----SALLDMYAKCGCLDEAIRTF 177

Query: 579 DSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
           + +P K S   W A+++    +G     I    ++F  M H
Sbjct: 178 NEMPEKNSI-TWNAVISAYAQYGQAKNAI----RMFDSMLH 213



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 164/397 (41%), Gaps = 92/397 (23%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           + R +HA +I  G    + + N LID+Y K   L  A+T+F                   
Sbjct: 36  IGRQIHAQLILLGLTLEDFMGNALIDMYSKCGMLDAAKTIFA------------------ 77

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT- 151
                       NK+    +  + + A+IT    N     A++LF +MRR  + PD  T 
Sbjct: 78  ------------NKSD---KTAISWTALITGCVQNGQHEEALQLFCNMRRAGLSPDRATC 122

Query: 152 --FTSVLSALALIVEEEKQCMQMHCTVVKSG--TGLFTSVLNALISVYVKCVSSPFVSSR 207
                  S+L +I        Q+H  +  SG  + +F+   +AL+ +Y KC         
Sbjct: 123 SSIIKSSSSLGVIGIGR----QLHAYLTTSGHMSSVFSG--SALLDMYAKC--------- 167

Query: 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV 267
             +  A R F+EMPE++ ++W  +++ Y +      A    D M          L  G+ 
Sbjct: 168 GCLDEAIRTFNEMPEKNSITWNAVISAYAQYGQAKNAIRMFDSM----------LHCGFC 217

Query: 268 HRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY--LLR--TEAKPTPEFSLPV 323
                        D  T+ SV++AC+++G   L ++   Y  L+R      P  E    V
Sbjct: 218 P------------DPVTFLSVLAACSHNG---LAEECMKYFDLMRYYNSMSPWKEHYSCV 262

Query: 324 NNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLID----EAKSLFEAM 378
            +AL     + G  ++ + + ++MP E D V W++IL +    G  D     A++LF  M
Sbjct: 263 IDAL----GRAGCFDKIQKVLDEMPFEADPVIWSSILHSCRIYGNQDLATVAAENLF-TM 317

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
              +  ++ ++ +  A+ G  E   ++   MR  G +
Sbjct: 318 VPTDATAYVILSNIYAKAGNWEGAARVKKIMRDRGVR 354


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/572 (38%), Positives = 331/572 (57%), Gaps = 63/572 (11%)

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +G+ R+VF+ MP+RD +SW T+++G  +N           GM E+      AL+   + R
Sbjct: 146 LGSLRKVFEMMPKRDIVSWNTVISGNAQN-----------GMHED------ALM---MVR 185

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
           E+    LR   D FT +SV+   A       GK++H Y +R       +  + + ++L+ 
Sbjct: 186 EMGNADLRP--DSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGY----DADVFIGSSLID 239

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           +Y KC +V+++  +F  +P+ D +                               SW  +
Sbjct: 240 MYAKCTRVDDSCRVFYMLPQHDGI-------------------------------SWNSI 268

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           I+G  QNG  +EGLK F QM +   KP   +F+  + +CA L  L  G+QLH  ++ S +
Sbjct: 269 IAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRF 328

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
           D ++   +AL+ MYA+CG +  A  +F+ M   D VSW AMI     HG+   AI L+++
Sbjct: 329 DGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKR 388

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
           M  EG+ P+ + F+ VL+AC+HAGLV E  +YF +M   Y I PG +HYA   DLL R G
Sbjct: 389 MEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVG 448

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629
           +  EA + I  +  +P+  +W  LLA CR+H NI+L  + +++LF + P + G YVLLSN
Sbjct: 449 RLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSN 508

Query: 630 MYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQ 689
           +Y+  GRW DA ++R  MRD+G+KK+P CSWIE+ NKVH F+  D +HP    + + L+ 
Sbjct: 509 IYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKV 568

Query: 690 LVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRI 749
           L+ +M + GYV DT  VLHD+E +QK Y L +HSE+LA+ FG++  P G T+RV KNLR+
Sbjct: 569 LLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRV 628

Query: 750 CGDCHNAFKFMSKVVGREIVVRDGKRFHHFRD 781
           C DCH A KF+SK+VGREIV      F+ F D
Sbjct: 629 CVDCHTATKFISKIVGREIV------FYFFLD 654



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 121/479 (25%), Positives = 217/479 (45%), Gaps = 89/479 (18%)

Query: 70  RTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSN 129
           + +FDE    D+ ++    + Y  S      R++F   P   RD V +N +I+  + N  
Sbjct: 124 KKVFDEGKTSDVYSKKEKESYYLGS-----LRKVFEMMP--KRDIVSWNTVISGNAQNGM 176

Query: 130 GHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLN 189
              A+ + R+M   D++PD+FT +SVL   A  V   K   ++H   +++G      + +
Sbjct: 177 HEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKG-KEIHGYAIRNGYDADVFIGS 235

Query: 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD 249
           +LI +Y KC         + +  + RVF  +P+ D +SW +++ G V+N   D   +F  
Sbjct: 236 SLIDMYAKC---------TRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQ 286

Query: 250 GMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
                                 +ML+ +I+ +  +++S++ ACA+     LGKQ+H Y++
Sbjct: 287 ----------------------QMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYII 324

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLID 369
           R+      + ++ + +ALV +Y KCG +  AR IF++M   D+VSW A++  Y       
Sbjct: 325 RSRF----DGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGY------- 373

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
                                   A +G+  + + LF +M +EG KP   AF   +T+C+
Sbjct: 374 ------------------------ALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACS 409

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAG----NALITMYARCGVVEAANCVFNTMPNVDSV 485
             G ++   +    +     D  +  G     A+  +  R G +E A    + M    + 
Sbjct: 410 HAGLVDEAWKYFNSMTQ---DYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTG 466

Query: 486 S-WNAMIAALGQHGNGARAIELYEQMLKE--GILPDRITFLTVLSAC-NHAGLVKEGRR 540
           S W+ ++AA   H N    IEL E++ K+   + P  I    +LS   + AG  K+ R+
Sbjct: 467 SVWSTLLAACRVHKN----IELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARK 521



 Score = 47.8 bits (112), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 33/129 (25%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           T  L + +H ++I S F     I + L+D+Y K   +  AR +FD++   D+V+ T    
Sbjct: 312 TLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWT---- 367

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
                                        AMI  Y+ + + + AI LF+ M  + VKP+ 
Sbjct: 368 -----------------------------AMIMGYALHGHAYDAISLFKRMEVEGVKPNY 398

Query: 150 FTFTSVLSA 158
             F +VL+A
Sbjct: 399 VAFMAVLTA 407


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 263/782 (33%), Positives = 394/782 (50%), Gaps = 112/782 (14%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSG--FKPREHIINRLIDIYCKSLKLVYART 71
           N Y S +     +  +T+   +S+H H++ SG  F    H   +LID Y K   +  AR 
Sbjct: 2   NCYTSLIAQFTNKKSLTT--LKSLHTHILKSGSLFSFFGH---KLIDGYIKCSVITEARK 56

Query: 72  LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           LFDE+P                                  R  V +N+MI+++       
Sbjct: 57  LFDEMPN---------------------------------RHIVTWNSMISSHVSRGKTK 83

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTS-VLN 189
            AIEL+ +M  + V PD +TF+++  A + + V  E Q  + H   V  G  +    V  
Sbjct: 84  EAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQ--KAHGLAVVLGFEVSDGFVAT 141

Query: 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD 249
            ++ +Y K            M  AR VFD + ++D + +T ++ GY +      A E  +
Sbjct: 142 GIVDMYAKF---------GKMKDARFVFDRVLDKDVVLFTALIVGYNQRGLDGEALEVFE 192

Query: 250 GMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
            M   VG                    RI+ +E+T  SV+ +C N G    GK +H  ++
Sbjct: 193 DM---VGS-------------------RIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVV 230

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLID 369
               K   E  +    +L+T+Y KC  V ++  +FN +             AY S     
Sbjct: 231 ----KSGLESVVASQTSLLTMYSKCNMVEDSIKVFNSL-------------AYASH---- 269

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
                         ++WT  I GL QNG  E  L +F +M      P  + F+  + +C+
Sbjct: 270 --------------VTWTSFIVGLVQNGREEIALSMFREMIRCSISPNHFTFSSILHACS 315

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
            L  LE G Q+HA  V  G D +     ALI +Y +CG VE A  VF ++  +D VS N 
Sbjct: 316 SLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEKARSVFESLTELDVVSINT 375

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY 549
           MI A  Q+G G  A+EL+E+M K G  P+ +TF+++L ACN+AGLV+EG + F  +   +
Sbjct: 376 MIYAYAQNGFGHEALELFERMKKLGHKPNVVTFISILLACNNAGLVEEGCQIFSLIRNNH 435

Query: 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609
            I    DHY   IDLL RA +F EA  +I+     P    W  LL  C+IHG +++  + 
Sbjct: 436 SIELTRDHYTCMIDLLGRAKRFEEAAMLIEEGK-NPDVIQWRTLLNACKIHGEVEMAEKF 494

Query: 610 AEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHV 669
            +++    P   GT++LL+N+YA+ G+WD+   ++   RD  +KK P  SW+++D +VH 
Sbjct: 495 MKKMLDQAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRDLRLKKTPAMSWVDIDREVHT 554

Query: 670 FLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVA 729
           F+  D +HP A  + + L +L+ ++  LGY PDTKFVL D+E ++K  AL  HSEKLA+A
Sbjct: 555 FMAGDLSHPRAHEISEMLHELIEKVITLGYNPDTKFVLQDLEEEKKISALYYHSEKLAIA 614

Query: 730 FGLMKLPGGAT-VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788
           F L K  G  T +R+ KNLR+CGDCH+  KF+S + GR+I+ RD KRFHHF+ G CSC D
Sbjct: 615 FALWKTCGKNTAIRIFKNLRVCGDCHSWIKFVSLLTGRDIIARDAKRFHHFKGGICSCKD 674

Query: 789 YW 790
           YW
Sbjct: 675 YW 676


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/575 (39%), Positives = 338/575 (58%), Gaps = 21/575 (3%)

Query: 230 TMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE---------LKMLMLRIQL 280
           T+ T     D L A R F +G++      WNA+I  Y + +          +ML   +  
Sbjct: 28  TLCTSPHVGDLLYAQRVF-NGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPH 86

Query: 281 DEFTYTSVISACANSGLFRLGK--QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
           + +T+  ++ AC N  L  +G+  QVH  +++     +  F+L   NAL+ +Y  CG+++
Sbjct: 87  NSYTFPFLLRACRN--LLAMGEALQVHGLVIKL-GFGSDVFAL---NALLHVYALCGEIH 140

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGY 398
            AR +F+ +PERD VSWN ++  Y+ +G +  A  +F  M  +N++SWT +ISGL + G 
Sbjct: 141 CARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQ 200

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
             E L L  +M+  GF+    A A  +T+CA LGAL+ GR LH  ++++G D     G A
Sbjct: 201 SVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCA 260

Query: 459 LITMYARCGVVEAANCVFNTMP--NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
           L+ MY +CG +E A  VF  +     D   W AMI     HG G  A+E + +M +EGI 
Sbjct: 261 LVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIR 320

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
           P+ ITF  VL AC++ GLV+EG+  F++M   Y + P  +HY   +DLL R+G+  EAK+
Sbjct: 321 PNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKE 380

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636
           +I  +P KPSA IW ALL  C IH +  LG Q    L ++   H+G Y+ L+ + A  G+
Sbjct: 381 LIKKMPMKPSAVIWGALLKACWIHRDFLLGSQVGAHLVEVDSDHSGRYIQLATILAAEGK 440

Query: 637 WDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRK 696
           W +AA VR  M+  GV   PG S + ++  VH FL     HP+ + +   L+Q+   +R+
Sbjct: 441 WKEAAEVRLKMKSLGVPISPGKSSVTLNGIVHEFLAGHQDHPQMEQIQLKLKQIAERLRQ 500

Query: 697 -LGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHN 755
             GY P TK +L D+E+++KE A++ HSEKLA+AFGL+    G T+RV+KNLRIC DCH 
Sbjct: 501 DEGYEPATKDLLLDLENEEKETAMAQHSEKLAIAFGLINTKPGTTIRVIKNLRICRDCHT 560

Query: 756 AFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             K +S++  REI++RD  RFHHFRDG CSC DYW
Sbjct: 561 VAKLVSQIYSREIIMRDRVRFHHFRDGSCSCKDYW 595



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 141/562 (25%), Positives = 232/562 (41%), Gaps = 138/562 (24%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSL---KLVYARTLFDEIPQPDIVARTTLIAAY 91
           + + A MI +       +  + + + C S     L+YA+ +F+ I  P+      +I AY
Sbjct: 5   KQIQAQMIKTAIITEPKLATKFLTL-CTSPHVGDLLYAQRVFNGITSPNTFMWNAIIRAY 63

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
           S SD  +LA               F +                  ++ M    V  +++T
Sbjct: 64  SNSDEPELA---------------FLS------------------YQQMLSSSVPHNSYT 90

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           F  +L A   ++    + +Q+H  V+K G G     LNAL+ VY  C           + 
Sbjct: 91  FPFLLRACRNLL-AMGEALQVHGLVIKLGFGSDVFALNALLHVYALC---------GEIH 140

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKN-DYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
            AR++FD +PERD +SW  M+ GY+K+ D   A   FLD   +NV V+W +LISG V   
Sbjct: 141 CARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNV-VSWTSLISGLVEAG 199

Query: 271 LKMLMLRI---------QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
             +  L +         +LD     S+++ACAN G    G+ +H Y+L        +   
Sbjct: 200 QSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGV----DVDR 255

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMP--ERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
            +  ALV +Y KCG + EA  +F ++   ++D+  W A                      
Sbjct: 256 VIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTA---------------------- 293

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
                    MI G A +G G E L+ F++MR EG +P    F   + +C+  G +E G++
Sbjct: 294 ---------MIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKE 344

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           L                             ++  C +N  P+++   +  M+  LG+ G 
Sbjct: 345 L----------------------------FKSMKCFYNVNPSIE--HYGCMVDLLGRSGR 374

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSAC-NHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
              A EL ++M    + P  + +  +L AC  H   +        +  G + +    DH 
Sbjct: 375 LDEAKELIKKM---PMKPSAVIWGALLKACWIHRDFL------LGSQVGAHLVEVDSDHS 425

Query: 559 ARFIDL---LCRAGKFSEAKDV 577
            R+I L   L   GK+ EA +V
Sbjct: 426 GRYIQLATILAAEGKWKEAAEV 447



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 155/351 (44%), Gaps = 40/351 (11%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF 73
           N Y     L   RN +    A  VH  +I  GF      +N L+ +Y    ++  AR LF
Sbjct: 87  NSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLF 146

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
           D IP+ D V+   +I  Y  S +VK A  +F   PLK  + V + ++I+          A
Sbjct: 147 DNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLK--NVVSWTSLISGLVEAGQSVEA 204

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
           + L  +M+    + D     S+L+A A +   + Q   +H  V+ +G  +   +  AL++
Sbjct: 205 LSLCYEMQNAGFELDGVAIASLLTACANLGALD-QGRWLHFYVLNNGVDVDRVIGCALVN 263

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMP--ERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           +YVKC           M  A  VF ++   ++D   WT M+ G+  +     A E+ + M
Sbjct: 264 MYVKCGD---------MEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRM 314

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
                            RE       I+ +  T+T+V+ AC+  GL   GK++    ++ 
Sbjct: 315 ----------------RRE------GIRPNSITFTAVLRACSYGGLVEEGKELFKS-MKC 351

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
                P  S+     +V L  + G+++EA+++  +MP +   V W A+L A
Sbjct: 352 FYNVNP--SIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKA 400


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  424 bits (1090), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 248/779 (31%), Positives = 396/779 (50%), Gaps = 106/779 (13%)

Query: 18  SQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP 77
           S L++C  +    S     VH +++ SG        N LID+YCK  + + A  +FD +P
Sbjct: 11  SILRVCTRKG--LSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMP 68

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           +                                 R+ V ++A+++ +  N +   ++ LF
Sbjct: 69  E---------------------------------RNVVSWSALMSGHVLNGDLKGSLSLF 95

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
            +M R  + P+ FTF++ L A  L+   EK  +Q+H   +K G  +   V N+L+ +Y K
Sbjct: 96  SEMGRQGIYPNEFTFSTNLKACGLLNALEKG-LQIHGFCLKIGFEMMVEVGNSLVDMYSK 154

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C           +  A +VF  + +R  +SW  M+ G+V   Y   A +    M E    
Sbjct: 155 C---------GRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEA--- 202

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                             ++ + DEFT TS++ AC+++G+   GKQ+H +L+R+     P
Sbjct: 203 -----------------NIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRS-GFHCP 244

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
             S  +  +LV LY KCG +  AR                                 F+ 
Sbjct: 245 S-SATITGSLVDLYVKCGYLFSARKA-------------------------------FDQ 272

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
           ++E+ ++SW+ +I G AQ G   E + LF +++    +   +A +  I   A    L  G
Sbjct: 273 IKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQG 332

Query: 438 RQLHAQLVH--SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
           +Q+ A  V   SG ++S+   N+++ MY +CG+V+ A   F  M   D +SW  +I   G
Sbjct: 333 KQMQALAVKLPSGLETSVL--NSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYG 390

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
           +HG G +++ ++ +ML+  I PD + +L VLSAC+H+G++KEG   F  +   +GI P  
Sbjct: 391 KHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRV 450

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
           +HYA  +DLL RAG+  EAK +ID++P KP+  IW+ LL+ CR+HG+I+LG +  + L +
Sbjct: 451 EHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLR 510

Query: 616 LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
           +   +   YV++SN+Y   G W++    R+L   +G+KKE G SW+E++ +VH F   + 
Sbjct: 511 IDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREVHFFRSGED 570

Query: 676 AHPEAQAVYKYLEQLVLEMR-KLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMK 734
           +HP    + + L++    +R +LGYV   K  LHD++ + KE  L  HSEKLA+   L  
Sbjct: 571 SHPLTPVIQETLKEAERRLREELGYVYGLKHELHDIDDESKEENLRAHSEKLAIGLALAT 630

Query: 735 L---PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
                 G T+RV KNLR+C DCH   K +SK+     VVRD  RFH F DG CSCGDYW
Sbjct: 631 GGLNQKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDGCCSCGDYW 689


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  424 bits (1090), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 259/761 (34%), Positives = 396/761 (52%), Gaps = 80/761 (10%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTL------FDEIPQPDIVARTTL 87
           A  ++  ++ +G +P  +    ++     ++ LV  R +      FD     D+V    L
Sbjct: 119 ALCLYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVV--NAL 176

Query: 88  IAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147
           I  Y    +V  AR +F+K P   RD + +NAMI+ Y  N      +ELF  MR   + P
Sbjct: 177 ITMYVKCGDVVSARMLFDKMP--TRDRISWNAMISGYFENDECLEGLELFFRMRELSIDP 234

Query: 148 DNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSR 207
           D  T TSV+SA  L+  +E+   Q+H  VV++      SV N+LI +Y+         S 
Sbjct: 235 DLMTMTSVISACELL-GDERLGTQLHSYVVRTAYDGNISVYNSLIQMYL---------SV 284

Query: 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV 267
                A  VF  M  RD +SWTT+++G V N   D A E    M           I+G +
Sbjct: 285 GHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTME----------ITGTM 334

Query: 268 HRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327
                        DE T  SV+SACA+ G   +G ++H    RT         + V N+L
Sbjct: 335 P------------DEVTIASVLSACASLGQLDMGMKLHELAERT----GHILYVVVANSL 378

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWT 387
           + +Y KC ++ +A +IF+Q+P++D++SW ++                             
Sbjct: 379 IDMYSKCKRIEKALEIFHQIPDKDVISWTSV----------------------------- 409

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447
             I+GL  N    E L  F +M L+  KP       A+++CA +GAL  G+++HA  + +
Sbjct: 410 --INGLRINNRCFEALIFFRKMILKS-KPNSVTLISALSACARVGALMCGKEIHAHALKA 466

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
           G        NA++ +Y RCG +  A   FN +   D  +WN ++    Q G GA  +EL+
Sbjct: 467 GMGFDGFLPNAILDLYVRCGRMRTALNQFN-LNEKDVGAWNILLTGYAQKGKGAMVMELF 525

Query: 508 EQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR 567
           ++M++  I PD +TF+++L AC+ +G+V EG  YF+ M   Y I P   HYA  +DLL R
Sbjct: 526 KRMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGR 585

Query: 568 AGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627
           AGK +EA + I+ +P KP   IW ALL  CRIH ++ LG  AA+ +F+      G Y+LL
Sbjct: 586 AGKLNEAHEFIERMPIKPDPAIWGALLNACRIHRHVLLGELAAQHIFKQDAESIGYYILL 645

Query: 628 SNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYL 687
            N+YA+ G+WD+ A+VR+ M++ G+  +PGCSW+EV  KVH FL  D  HP+ Q +   L
Sbjct: 646 CNLYADSGKWDEVAKVRRTMKEEGLIVDPGCSWVEVKGKVHAFLSGDNFHPQMQEINVVL 705

Query: 688 EQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNL 747
           E    +M+  G+       +  +++ + +     HSE+ A+A+ L+    G  + V KNL
Sbjct: 706 EGFYEKMKTSGFNGQECSSMDGIQTSKAD-IFCGHSERQAIAYSLINSAPGMPIWVTKNL 764

Query: 748 RICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788
            +C  CH+  KF+SK+V REI VRD ++FHHF+DG CSCGD
Sbjct: 765 YMCQSCHSTVKFISKIVRREISVRDTEQFHHFKDGLCSCGD 805



 Score =  179 bits (453), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 137/489 (28%), Positives = 223/489 (45%), Gaps = 79/489 (16%)

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ 171
           RD   +N ++  Y+       A+ L+  +    ++PD +TF SVL + A  ++  +   +
Sbjct: 98  RDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRG-RE 156

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H  VV+    +   V+NALI++YVKC     VS       AR +FD+MP RD +SW  M
Sbjct: 157 VHAHVVRFDFDMDVDVVNALITMYVKC--GDVVS-------ARMLFDKMPTRDRISWNAM 207

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           ++GY +ND      E L+G+                    +M  L I  D  T TSVISA
Sbjct: 208 ISGYFEND------ECLEGL----------------ELFFRMRELSIDPDLMTMTSVISA 245

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           C   G  RLG Q+H+Y++RT      + ++ V N+L+ +Y   G   EA  +F+ M  RD
Sbjct: 246 CELLGDERLGTQLHSYVVRT----AYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRD 301

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
           +VSW  I                               ISG   N   ++ L+ +  M +
Sbjct: 302 VVSWTTI-------------------------------ISGCVDNLLPDKALETYKTMEI 330

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
            G  P +   A  +++CA LG L+ G +LH     +G+   +   N+LI MY++C  +E 
Sbjct: 331 TGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEK 390

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
           A  +F+ +P+ D +SW ++I  L  +     A+  + +M+ +   P+ +T ++ LSAC  
Sbjct: 391 ALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKS-KPNSVTLISALSACAR 449

Query: 532 AGLVKEGRRY----FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSA 587
            G +  G+       +   G  G  P        +DL  R G+   A +  +    +   
Sbjct: 450 VGALMCGKEIHAHALKAGMGFDGFLPNA-----ILDLYVRCGRMRTALNQFN--LNEKDV 502

Query: 588 PIWEALLAG 596
             W  LL G
Sbjct: 503 GAWNILLTG 511



 Score =  164 bits (414), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 122/416 (29%), Positives = 189/416 (45%), Gaps = 76/416 (18%)

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           NAL+S++V+            +G A  VF  M ERD  SW  ++ GY K  + D A    
Sbjct: 73  NALLSMFVRFGD---------VGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLY 123

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
                              HR   +L   I+ D +T+ SV+ +CA +     G++VHA++
Sbjct: 124 -------------------HR---ILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHV 161

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
           +R +     +  + V NAL+T+Y KCG V  AR +F++MP RD +SWNA++S Y      
Sbjct: 162 VRFDF----DMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYF----- 212

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
                                     +N    EGL+LF +MR     P        I++C
Sbjct: 213 --------------------------ENDECLEGLELFFRMRELSIDPDLMTMTSVISAC 246

Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
             LG    G QLH+ +V + YD ++S  N+LI MY   G  + A  VF+ M   D VSW 
Sbjct: 247 ELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWT 306

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFE----T 544
            +I+    +    +A+E Y+ M   G +PD +T  +VLSAC   G +  G +  E    T
Sbjct: 307 TIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERT 366

Query: 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
            H  Y +          ID+  +  +  +A ++   +P K     W +++ G RI+
Sbjct: 367 GHILYVVVANS-----LIDMYSKCKRIEKALEIFHQIPDKDVIS-WTSVINGLRIN 416



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/399 (27%), Positives = 182/399 (45%), Gaps = 51/399 (12%)

Query: 263 ISGYVHRELK----MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
           +SG + + LK    M  ++I ++E  + ++I  C N   +  G+ V   +L   +     
Sbjct: 10  LSGNLEQALKHLASMQEVKIPVEEDCFVALIRLCENKRGYSEGEYVWKAVL---SSLVTL 66

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
            S+ + NAL++++ + G V  A ++F +M ERDL SWN ++  Y  AG  DEA       
Sbjct: 67  LSVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEA------- 119

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
                                   L L+ ++   G +P  Y F   + SCAG   L  GR
Sbjct: 120 ------------------------LCLYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGR 155

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           ++HA +V   +D  +   NALITMY +CG V +A  +F+ MP  D +SWNAMI+   ++ 
Sbjct: 156 EVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFEND 215

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH- 557
                +EL+ +M +  I PD +T  +V+SAC   G  + G     T    Y +    D  
Sbjct: 216 ECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLG-----TQLHSYVVRTAYDGN 270

Query: 558 ---YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE--Q 612
              Y   I +    G + EA+ V   +  +     W  +++GC  +   D  ++  +  +
Sbjct: 271 ISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVS-WTTIISGCVDNLLPDKALETYKTME 329

Query: 613 LFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
           +   MP       +LS   A+LG+ D   ++ +L    G
Sbjct: 330 ITGTMPDEVTIASVLSAC-ASLGQLDMGMKLHELAERTG 367



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 123/333 (36%), Gaps = 48/333 (14%)

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS- 451
           L  +G  E+ LK  + M+       +  F   I  C        G  +   ++ S     
Sbjct: 8   LCLSGNLEQALKHLASMQEVKIPVEEDCFVALIRLCENKRGYSEGEYVWKAVLSSLVTLL 67

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
           S+  GNAL++M+ R G V  A  VF  M   D  SWN ++    + G    A+ LY ++L
Sbjct: 68  SVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRIL 127

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571
             GI PD  TF +VL +C  A  +  GR     +   +      D     I +  + G  
Sbjct: 128 WAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVV-RFDFDMDVDVVNALITMYVKCGDV 186

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAG----------------------------------- 596
             A+ + D +P +     W A+++G                                   
Sbjct: 187 VSARMLFDKMPTRDRIS-WNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISA 245

Query: 597 CRIHGNIDLGIQAAEQLFQL-MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKE 655
           C + G+  LG Q    + +     +   Y  L  MY ++G W +A  V   M  R V   
Sbjct: 246 CELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDV--- 302

Query: 656 PGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLE 688
              SW  + +      VD+    +A   YK +E
Sbjct: 303 --VSWTTIISGC----VDNLLPDKALETYKTME 329


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  424 bits (1090), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 264/755 (34%), Positives = 378/755 (50%), Gaps = 103/755 (13%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R VH H+I  GF+    ++N LI +Y K                 DI +          
Sbjct: 214 GREVHLHVIRYGFESDVDVVNALITMYVKC---------------GDIFS---------- 248

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                 AR +F++ P   RD + +NAMI+ Y  N      + LF  MR   V PD  T T
Sbjct: 249 ------ARLVFDRMP--RRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMT 300

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           SV+SA   +  +E+   ++H  V+K+G     SV N+LI ++         SS      A
Sbjct: 301 SVISACEAL-GDERLGREVHGYVIKTGFVAEVSVNNSLIQMH---------SSVGCWDEA 350

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
             VF +M  +D +SWT M++GY KN   + A E    M E+ GV                
Sbjct: 351 EMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIM-EHEGVV--------------- 394

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
                  DE T  SV+SACA  GL   G  +H +  RT         + V N+L+ +Y K
Sbjct: 395 ------PDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSY----VIVANSLIDMYSK 444

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
           C                                 ID+A  +F  +  +N++SWT +I GL
Sbjct: 445 CR-------------------------------CIDKALEVFHRIPNKNVISWTSIILGL 473

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL 453
             N    E L  F QM L   KP        +++CA +GAL  G+++HA  + +G     
Sbjct: 474 RLNYRSFEALFFFQQMIL-SLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDG 532

Query: 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE 513
              NAL+ MY RCG +E A   FN+    D  SWN ++    Q G G  A+EL+ +M++ 
Sbjct: 533 FLPNALLDMYVRCGRMEPAWNQFNSCEK-DVASWNILLTGYAQQGKGGLAVELFHKMIES 591

Query: 514 GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE 573
            + PD ITF ++L AC+ +G+V +G  YFE+M   + I P   HYA  +DLL RAG+  +
Sbjct: 592 DVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLED 651

Query: 574 AKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN 633
           A + I  +P  P   IW ALL  CRI+ N++LG  AA+ +F++     G Y+LL N+YA+
Sbjct: 652 AYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYAD 711

Query: 634 LGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLE 693
            G+WD+ ARVRK+MR+  +  +PGCSW+EV  +VH FL  D  HP+ + +   LE    +
Sbjct: 712 SGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEK 771

Query: 694 MRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDC 753
           M   G          D+++ + E     HSE+LA+AFGL+    G  + V KNL +C +C
Sbjct: 772 MEATGLSMSKDSRRDDIDASKAE-IFCGHSERLAIAFGLINTVPGTPIWVTKNLYMCENC 830

Query: 754 HNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788
           HN  KF+SKVV R I VRD ++FHHF+DG CSCGD
Sbjct: 831 HNTVKFISKVVRRGISVRDTEQFHHFKDGVCSCGD 865



 Score =  192 bits (489), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 141/509 (27%), Positives = 234/509 (45%), Gaps = 81/509 (15%)

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ 171
           RD   +N ++  Y+       A+ L+  M    ++PD +TF  VL     + +  +   +
Sbjct: 158 RDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARG-RE 216

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H  V++ G      V+NALI++YVKC           + +AR VFD MP RD +SW  M
Sbjct: 217 VHLHVIRYGFESDVDVVNALITMYVKCGD---------IFSARLVFDRMPRRDRISWNAM 267

Query: 232 MTGYVKNDY-LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++GY +ND  L+  R F                  ++ RE       +  D  T TSVIS
Sbjct: 268 ISGYFENDVCLEGLRLF------------------FMMRE-----FFVDPDLMTMTSVIS 304

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           AC   G  RLG++VH Y+++T         + VNN+L+ ++   G  +EA  +F++M  +
Sbjct: 305 ACEALGDERLGREVHGYVIKTGFVA----EVSVNNSLIQMHSSVGCWDEAEMVFSKMEFK 360

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           DLVSW A++S Y                                +NG  E+ ++ ++ M 
Sbjct: 361 DLVSWTAMISGY-------------------------------EKNGLPEKAVETYTIME 389

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
            EG  P +   A  +++CAGLG L+ G  LH     +G  S +   N+LI MY++C  ++
Sbjct: 390 HEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCID 449

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
            A  VF+ +PN + +SW ++I  L  +     A+  ++QM+   + P+ +T ++VLSAC 
Sbjct: 450 KALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMIL-SLKPNSVTLVSVLSACA 508

Query: 531 HAGLVKEGRRY----FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
             G +  G+        T  G  G  P        +D+  R G+   A +  +S   +  
Sbjct: 509 RIGALSCGKEIHAHALRTGLGFDGFLPNA-----LLDMYVRCGRMEPAWNQFNSC--EKD 561

Query: 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
              W  LL G    G   L ++   ++ +
Sbjct: 562 VASWNILLTGYAQQGKGGLAVELFHKMIE 590



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 126/434 (29%), Positives = 197/434 (45%), Gaps = 76/434 (17%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           ++H  V K+ T L   + NAL+S++V+            +  A  VF +M ERD  SW  
Sbjct: 115 RVHSYVSKTVTRLGVRLGNALLSMFVRFGD---------LVEAWYVFGKMAERDLFSWNV 165

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++ GY K  Y D A                       HR   ML + I+ D +T+  V+ 
Sbjct: 166 LVGGYAKAGYFDEALNLY-------------------HR---MLWVGIRPDVYTFPCVLR 203

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
            C        G++VH +++R       E  + V NAL+T+Y KCG +  AR +F++MP R
Sbjct: 204 TCGGLPDLARGREVHLHVIRYGF----ESDVDVVNALITMYVKCGDIFSARLVFDRMPRR 259

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           D +SWNA++S Y                                +N    EGL+LF  MR
Sbjct: 260 DRISWNAMISGYF-------------------------------ENDVCLEGLRLFFMMR 288

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
                P        I++C  LG    GR++H  ++ +G+ + +S  N+LI M++  G  +
Sbjct: 289 EFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWD 348

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
            A  VF+ M   D VSW AMI+   ++G   +A+E Y  M  EG++PD IT  +VLSAC 
Sbjct: 349 EAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACA 408

Query: 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYA----RFIDLLCRAGKFSEAKDVIDSLPFKPS 586
             GL+ +G      M   +    G   Y       ID+  +     +A +V   +P K +
Sbjct: 409 GLGLLDKG-----IMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNK-N 462

Query: 587 APIWEALLAGCRIH 600
              W +++ G R++
Sbjct: 463 VISWTSIILGLRLN 476



 Score =  145 bits (366), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 157/333 (47%), Gaps = 45/333 (13%)

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           M  L++ ++E TY +++  C        G +VH+Y+    +K      + + NAL++++ 
Sbjct: 85  MQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYV----SKTVTRLGVRLGNALLSMFV 140

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           + G + EA  +F +M ERDL SWN ++  Y  AG  DEA                     
Sbjct: 141 RFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEA--------------------- 179

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
                     L L+ +M   G +P  Y F   + +C GL  L  GR++H  ++  G++S 
Sbjct: 180 ----------LNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESD 229

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           +   NALITMY +CG + +A  VF+ MP  D +SWNAMI+   ++      + L+  M +
Sbjct: 230 VDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMRE 289

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG----EDHYARFIDLLCRA 568
             + PD +T  +V+SAC   G  + GR     +HG Y I  G           I +    
Sbjct: 290 FFVDPDLMTMTSVISACEALGDERLGRE----VHG-YVIKTGFVAEVSVNNSLIQMHSSV 344

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
           G + EA+ V   + FK     W A+++G   +G
Sbjct: 345 GCWDEAEMVFSKMEFKDLVS-WTAMISGYEKNG 376


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  424 bits (1090), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 244/706 (34%), Positives = 368/706 (52%), Gaps = 69/706 (9%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           T LI AYS    V  AR +F+   +  +D V + AM++ YS N     A+  F  MR   
Sbjct: 187 TALIDAYSLCGAVCHARCVFDG--IVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTG 244

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
            KP+ F  TS L A A+ +        +H   VK+       V  AL+ +Y KC      
Sbjct: 245 FKPNPFVLTSALKA-AVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGD---- 299

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                +  A  +F+ +P  D + W+ +++ Y ++   + A E                  
Sbjct: 300 -----IEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMF---------------- 338

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
                 L+M+   +  +EF+ + V+ ACAN     LG+Q+H   +    K   E  L V 
Sbjct: 339 ------LRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAI----KLGYESELFVG 388

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
           NAL+ +Y KC      R++ N +                          +F ++++ N +
Sbjct: 389 NALMDMYAKC------RNMENSL-------------------------EIFSSLQDANEV 417

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
           SW  +I G  Q+G+ E+ L +F +MR          F+  + +CA   ++++  Q+H+ +
Sbjct: 418 SWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLI 477

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
             S +++     N+LI  YA+CG +  A  VF ++   D VSWN++I+A   HG    A+
Sbjct: 478 EKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNAL 537

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564
           EL+++M K  I  + +TF+++LS C   GLV +G   F +M   + I P  +HY   + L
Sbjct: 538 ELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRL 597

Query: 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624
           L RAG+ ++A   I  +P  PS  +W ALL+ C +H N+ LG  AAE++  + PH   TY
Sbjct: 598 LGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEPHDETTY 657

Query: 625 VLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVY 684
           VLLSNMYA  G  D+ A  RK MR+ GVKKE G SW+E+  +VH F V    HP+ + + 
Sbjct: 658 VLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSVGSADHPDMRIIN 717

Query: 685 KYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVL 744
             LE L L+  + GYVPD   VLHD++ ++K   L  HSE+LA+A+GL   P G  +R++
Sbjct: 718 AMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPGHPIRIM 777

Query: 745 KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KNLR C DCH  FK +SK+V REI+VRD  RFHHF +G CSCGDYW
Sbjct: 778 KNLRSCLDCHTMFKVISKIVQREIIVRDINRFHHFEEGICSCGDYW 823



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 135/533 (25%), Positives = 231/533 (43%), Gaps = 85/533 (15%)

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           + Q D      L+  Y+    +  AR +F+  P   R+ V +  ++  Y+       A+E
Sbjct: 77  VAQLDTFCANVLLNFYAKLGPLATARRLFDGMP--ERNRVSFVTLMQGYALRGEFEEALE 134

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LFR ++R+  + ++F  T++L  L  +      C  +H    K G      V  ALI  Y
Sbjct: 135 LFRRLQREGHEVNHFVLTTILKVLVTMDAPGLAC-GIHACACKLGHDRNAFVGTALIDAY 193

Query: 196 VKCVSSPFVSSRSLMGA---ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
                       SL GA   AR VFD +  +D ++WT M++ Y +ND  + A   L+  S
Sbjct: 194 ------------SLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYA---LNTFS 238

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA--CANSGLFRLGKQVHAYLLR 310
                              KM M   + + F  TS + A  C +S L  LGK +H   ++
Sbjct: 239 -------------------KMRMTGFKPNPFVLTSALKAAVCLSSAL--LGKGIHGCSVK 277

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
           T     P     V  AL+ +Y KCG + +A  IF  +P  D++ W+ ++S Y        
Sbjct: 278 TLYDTEPH----VGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRY-------- 325

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
                                  AQ+   E+  ++F +M      P +++ +G + +CA 
Sbjct: 326 -----------------------AQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACAN 362

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
           +  LE G Q+H   +  GY+S L  GNAL+ MYA+C  +E +  +F+++ + + VSWN +
Sbjct: 363 IAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTI 422

Query: 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
           I    Q G    A+ ++ +M    +L  ++TF +VL AC +   +K   +    +     
Sbjct: 423 IVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKS-- 480

Query: 551 IPPGEDHYA--RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
                D       ID   + G   +A  V +S+  +     W ++++   +HG
Sbjct: 481 -TFNNDTIVCNSLIDTYAKCGFIRDALKVFESI-VECDVVSWNSIISAYALHG 531



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 167/384 (43%), Gaps = 73/384 (19%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L + +H   + + +    H+   L+D+Y K   +  A  +F+ IP  D++  + LI+ Y+
Sbjct: 267 LGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYA 326

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
            S                                      A E+F  M R  V P+ F+ 
Sbjct: 327 QS---------------------------------CQNEQAFEMFLRMMRSFVVPNEFSL 353

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
           + VL A A I   E    Q+H   +K G      V NAL+ +Y KC +         M  
Sbjct: 354 SGVLQACANIAFLELG-EQIHNLAIKLGYESELFVGNALMDMYAKCRN---------MEN 403

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           +  +F  + + +E+SW T++ GY ++                 G A +AL   +  R   
Sbjct: 404 SLEIFSSLQDANEVSWNTIIVGYCQS-----------------GFAEDALSVFHEMRAAH 446

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           ML  ++     T++SV+ ACAN+   +   Q+H+ +     K T      V N+L+  Y 
Sbjct: 447 MLSTQV-----TFSSVLRACANTSSIKHAVQIHSLI----EKSTFNNDTIVCNSLIDTYA 497

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL----LSWTV 388
           KCG + +A  +F  + E D+VSWN+I+SAY   G    A  LF+ M + ++    +++  
Sbjct: 498 KCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDIKANDVTFVS 557

Query: 389 MISGLAQNGYGEEGLKLFSQMRLE 412
           ++S     G   +GL LF+ M ++
Sbjct: 558 LLSVCGSTGLVNQGLWLFNSMMMD 581



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 130/322 (40%), Gaps = 45/322 (13%)

Query: 279 QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
           +LD +     +  C   G  R G+ VHA +++       +      N L+  Y K G + 
Sbjct: 42  KLDSYACARFLQRCIARGDARAGRAVHARVVQRGG--VAQLDTFCANVLLNFYAKLGPLA 99

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGY 398
            AR +F+ MPER+ VS+  ++  Y                               A  G 
Sbjct: 100 TARRLFDGMPERNRVSFVTLMQGY-------------------------------ALRGE 128

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
            EE L+LF +++ EG +   +     +     + A      +HA     G+D +   G A
Sbjct: 129 FEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTA 188

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           LI  Y+ CG V  A CVF+ +   D+V+W AM++   ++     A+  + +M   G  P+
Sbjct: 189 LIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPN 248

Query: 519 RITFLTVLSA--CNHAGLVKEGRRYFETMHG--PYGIPPGEDHY-ARFIDLLCRAGKFSE 573
                + L A  C  + L+ +G      +HG     +   E H     +D+  + G   +
Sbjct: 249 PFVLTSALKAAVCLSSALLGKG------IHGCSVKTLYDTEPHVGGALLDMYAKCGDIED 302

Query: 574 AKDVIDSLPFKPSAPIWEALLA 595
           A  + + +P      +W  L++
Sbjct: 303 AHAIFEMIP-HDDVILWSFLIS 323



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 5/154 (3%)

Query: 378 MRERNLLSWTVMISGL-AQNGYGEEGLKLFSQ--MRLEGFKPCDYAFAGAITSCAGLGAL 434
           +R R+LL     I+GL ++N    E L+        L   K   YA A  +  C   G  
Sbjct: 2   IRSRSLLPTFSQINGLLSRNLAANEALQWLDDELASLALPKLDSYACARFLQRCIARGDA 61

Query: 435 ENGRQLHAQLVHSGYDSSLSA--GNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
             GR +HA++V  G  + L     N L+  YA+ G +  A  +F+ MP  + VS+  ++ 
Sbjct: 62  RAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQ 121

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
                G    A+EL+ ++ +EG   +     T+L
Sbjct: 122 GYALRGEFEEALELFRRLQREGHEVNHFVLTTIL 155



 Score = 46.2 bits (108), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 11/151 (7%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMI--SSGFKPREHIINRLIDIYCKSLKLVYARTLF 73
           ++S L+ C      TSS+  +V  H +   S F     + N LID Y K   +  A  +F
Sbjct: 454 FSSVLRACAN----TSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVF 509

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMF---NKTPLKMRDTVFYNAMITAYSHNSNG 130
           + I + D+V+  ++I+AY+       A E+F   NK+ +K  D  F  ++++        
Sbjct: 510 ESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDIKANDVTFV-SLLSVCGSTGLV 568

Query: 131 HAAIELFRDMRRDD-VKPDNFTFTSVLSALA 160
           +  + LF  M  D  +KP    +T ++  L 
Sbjct: 569 NQGLWLFNSMMMDHRIKPSMEHYTCIVRLLG 599


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/568 (39%), Positives = 321/568 (56%), Gaps = 49/568 (8%)

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY----VHR---ELKMLMLR--IQ 279
             ++  YVK + L+ A +  D M +   ++W  +IS Y    +H+   EL +LMLR  ++
Sbjct: 52  NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVR 111

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            + +TY+SV+ AC      R+   +H                            CG + E
Sbjct: 112 PNVYTYSSVLRACNGMSDVRM---LH----------------------------CGIIKE 140

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
                    E D+   +A++  +   G  ++A S+F+ M   + + W  +I G AQN   
Sbjct: 141 G-------LESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRS 193

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
           +  L+LF +M+  GF          + +C GL  LE G Q H  +V   YD  L   NAL
Sbjct: 194 DVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNAL 251

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           + MY +CG +E A  VFN M   D ++W+ MI+ L Q+G    A++L+E M   G  P+ 
Sbjct: 252 VDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNY 311

Query: 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579
           IT + VL AC+HAGL+++G  YF +M   YGI PG +HY   IDLL +AGK  +A  +++
Sbjct: 312 ITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLN 371

Query: 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639
            +  +P A  W  LL  CR+  N+ L   AA+++  L P  AGTY +LSN+YAN  +WD 
Sbjct: 372 EMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTVLSNIYANSQKWDS 431

Query: 640 AARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGY 699
              +RK MRD G+KKEPGCSWIEV+ ++H F++ D +HP+   V K L QL+  +  +GY
Sbjct: 432 VEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVNKKLNQLIHRLIGIGY 491

Query: 700 VPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKF 759
           VP+T FVL D+E +Q E +L  HSEKLA+AFGLM LP    +R+ KNLRICGDCH   K 
Sbjct: 492 VPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPSEKVIRIRKNLRICGDCHVFCKL 551

Query: 760 MSKVVGREIVVRDGKRFHHFRDGKCSCG 787
            SK+  R IV+RD  R+HHF+DGKCSCG
Sbjct: 552 ASKLENRNIVIRDPIRYHHFQDGKCSCG 579



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 123/467 (26%), Positives = 200/467 (42%), Gaps = 113/467 (24%)

Query: 35  RSVHA------HMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLI 88
           R+VH       H+  +G +P   ++N LI++Y K   L  A  LFD++PQ ++++ TT+I
Sbjct: 27  RAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMI 86

Query: 89  AAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPD 148
           +AYS             K  +  +                    A+EL   M RD V+P+
Sbjct: 87  SAYS-------------KCKIHQK--------------------ALELLVLMLRDGVRPN 113

Query: 149 NFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
            +T++SVL A   + +       +HC ++K G      V +ALI V+ K +  P      
Sbjct: 114 VYTYSSVLRACNGMSDVR----MLHCGIIKEGLESDVYVRSALIDVFAK-LGEP------ 162

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
               A  VFDEM   D + W +++ G+ +N   D A E    M            +G++ 
Sbjct: 163 --EDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKR----------AGFI- 209

Query: 269 RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALV 328
                       ++ T TSV+ AC    L  LG Q H ++++ +        L +NNALV
Sbjct: 210 -----------AEQATLTSVLRACTGLALLELGMQAHVHIVKYDQ------DLILNNALV 252

Query: 329 TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV 388
            +Y KCG + +AR +FNQM ERD+++W+ ++S     G   EA                 
Sbjct: 253 DMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEA----------------- 295

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH-S 447
                         LKLF  M+  G KP      G + +C+  G LE+G      +    
Sbjct: 296 --------------LKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLY 341

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAA 493
           G +        +I +  + G ++ A  + N M    D+V+W  ++ A
Sbjct: 342 GINPGREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGA 388



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 154/364 (42%), Gaps = 92/364 (25%)

Query: 7   DYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKL 66
           D +R     Y+S L+ C+  + +     R +H  +I  G +   ++ + LID++ K  + 
Sbjct: 108 DGVRPNVYTYSSVLRACNGMSDV-----RMLHCGIIKEGLESDVYVRSALIDVFAKLGEP 162

Query: 67  VYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSH 126
             A ++FDE+   D +   ++I                                   ++ 
Sbjct: 163 EDALSVFDEMVTGDAIVWNSIIG---------------------------------GFAQ 189

Query: 127 NSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA---LALIVEEEKQCMQMHCTVVKSGTGL 183
           NS    A+ELF+ M+R     +  T TSVL A   LAL+    +  MQ H  +VK    L
Sbjct: 190 NSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALL----ELGMQAHVHIVKYDQDL 245

Query: 184 FTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDA 243
             +  NAL+ +Y KC S         +  ARRVF++M ERD ++W+TM++G  +N Y   
Sbjct: 246 ILN--NALVDMYCKCGS---------LEDARRVFNQMKERDVITWSTMISGLAQNGYSQE 294

Query: 244 AREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ 303
           A +  + M  + G   N +                     T   V+ AC+++GL   G  
Sbjct: 295 ALKLFELMKSS-GTKPNYI---------------------TIVGVLFACSHAGLLEDG-- 330

Query: 304 VHAYLLRTEAK-----PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNA 357
              Y  R+  K     P  E        ++ L  K GK+++A  + N+M  E D V+W  
Sbjct: 331 --WYYFRSMKKLYGINPGREHY----GCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRT 384

Query: 358 ILSA 361
           +L A
Sbjct: 385 LLGA 388



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 115/277 (41%), Gaps = 59/277 (21%)

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
            ++  I  C    A+  G  +   L  +G+   +   N LI MY +  ++  A+ +F+ M
Sbjct: 15  TYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQLFDQM 74

Query: 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN--------H 531
           P  + +SW  MI+A  +     +A+EL   ML++G+ P+  T+ +VL ACN        H
Sbjct: 75  PQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGMSDVRMLH 134

Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYAR--FIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
            G++KEG                 D Y R   ID+  + G+  +A  V D +     A +
Sbjct: 135 CGIIKEGLE--------------SDVYVRSALIDVFAKLGEPEDALSVFDEM-VTGDAIV 179

Query: 590 WEALLAGCRIHGNIDLGIQ----------AAEQ--LFQLMPHHAGTYVL----------- 626
           W +++ G   +   D+ ++           AEQ  L  ++    G  +L           
Sbjct: 180 WNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIV 239

Query: 627 -----------LSNMYANLGRWDDAARVRKLMRDRGV 652
                      L +MY   G  +DA RV   M++R V
Sbjct: 240 KYDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDV 276


>gi|357126224|ref|XP_003564788.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Brachypodium distachyon]
          Length = 515

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 204/507 (40%), Positives = 306/507 (60%), Gaps = 1/507 (0%)

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP-VNNALVTLYWKCGKVNEARDI 343
           Y + IS C+ +GL +    +   +      P  E++ P + N+   L            +
Sbjct: 9   YNAAISRCSRAGLHQRALALFHEMRAARGLPADEYTFPPILNSAALLRVPAAADALHALL 68

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
                   L   NA++ AY        A++LF+ M  R++++WT +++GLA++G  +  L
Sbjct: 69  LRAGLVAHLHVANALVDAYAKLSRGGAARALFDEMPRRDVVTWTSLLTGLARSGSHDAAL 128

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
           +++  M   G +P +Y  A A++SCAG   LE G+ +HA  V  G +  LS GN+L++MY
Sbjct: 129 RVYRDMVASGVEPDEYVVAAALSSCAGSTTLELGQSVHATAVRLGLEPFLSVGNSLVSMY 188

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
           A+ G +  A  VF+       V+W A+I    Q+G G  ++++Y +M+  G  PD +TF+
Sbjct: 189 AKTGSLREARKVFDATRLRCPVTWTALIVGYAQNGRGEESLQVYAEMVHSGCRPDYVTFI 248

Query: 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF 583
            +L AC+HAGLV  GR +F++M   +GI PG DHYA  +D+L RAG+  EA +++D    
Sbjct: 249 GLLFACSHAGLVDAGRAHFKSMQADHGITPGPDHYACMVDVLGRAGRLDEAMELLDQSTM 308

Query: 584 KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARV 643
           K  A +W+ALL  CR H N +L  +AAE +++L P  A  Y++LSN+Y+   RW D AR+
Sbjct: 309 KLDATVWKALLGACRTHRNAELAERAAEMVWRLDPTDAVPYIMLSNLYSRERRWSDVARI 368

Query: 644 RKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDT 703
           R LM+ RG+ KEPGCSW+      H+F V+D  HP    +Y+ +E+++ ++R  G+V DT
Sbjct: 369 RTLMKSRGIAKEPGCSWVVASGVTHLFYVEDRGHPRTDEIYRKVEEMMEKVRAEGFVADT 428

Query: 704 KFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKV 763
            + L D   + +E  L+ HSE+LAVAFGL+ LP GA VRV KNLR+CGDCH A K ++KV
Sbjct: 429 DWALQDEAPEGREKGLAHHSERLAVAFGLLALPAGAPVRVFKNLRVCGDCHVAIKMVAKV 488

Query: 764 VGREIVVRDGKRFHHFRDGKCSCGDYW 790
            GREI++RD   FHH RDG CSCGDYW
Sbjct: 489 YGREIILRDSNCFHHMRDGVCSCGDYW 515



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 176/412 (42%), Gaps = 79/412 (19%)

Query: 115 VFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP-DNFTFTSVLSALALIVEEEKQCMQMH 173
           V YNA I+  S       A+ LF +MR     P D +TF  +L++ AL+           
Sbjct: 7   VAYNAAISRCSRAGLHQRALALFHEMRAARGLPADEYTFPPILNSAALLRVPAAADALHA 66

Query: 174 CTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMT 233
             +          V NAL+  Y K          S  GAAR +FDEMP RD ++WT+++T
Sbjct: 67  LLLRAGLVAHL-HVANALVDAYAKL---------SRGGAARALFDEMPRRDVVTWTSLLT 116

Query: 234 GYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACA 293
           G  ++   DAA                      V+R+  M+   ++ DE+   + +S+CA
Sbjct: 117 GLARSGSHDAALR--------------------VYRD--MVASGVEPDEYVVAAALSSCA 154

Query: 294 NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV 353
            S    LG+ VHA  +R   +P     L V N+LV++Y K G + EAR +F+    R  V
Sbjct: 155 GSTTLELGQSVHATAVRLGLEPF----LSVGNSLVSMYAKTGSLREARKVFDATRLRCPV 210

Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
           +W A                               +I G AQNG GEE L+++++M   G
Sbjct: 211 TWTA-------------------------------LIVGYAQNGRGEESLQVYAEMVHSG 239

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG----NALITMYARCGVV 469
            +P    F G + +C+  G ++ GR   A       D  ++ G      ++ +  R G +
Sbjct: 240 CRPDYVTFIGLLFACSHAGLVDAGR---AHFKSMQADHGITPGPDHYACMVDVLGRAGRL 296

Query: 470 -EAANCVFNTMPNVDSVSWNAMIAALGQHGN---GARAIELYEQMLKEGILP 517
            EA   +  +   +D+  W A++ A   H N     RA E+  ++     +P
Sbjct: 297 DEAMELLDQSTMKLDATVWKALLGACRTHRNAELAERAAEMVWRLDPTDAVP 348



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 137/313 (43%), Gaps = 71/313 (22%)

Query: 51  HIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLK 110
           H+ N L+D Y K  +   AR LFDE+P+                                
Sbjct: 78  HVANALVDAYAKLSRGGAARALFDEMPR-------------------------------- 105

Query: 111 MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM 170
            RD V + +++T  + + +  AA+ ++RDM    V+PD +   + LS+ A     E    
Sbjct: 106 -RDVVTWTSLLTGLARSGSHDAALRVYRDMVASGVEPDEYVVAAALSSCAGSTTLELG-Q 163

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
            +H T V+ G   F SV N+L+S+Y K  S         +  AR+VFD    R  ++WT 
Sbjct: 164 SVHATAVRLGLEPFLSVGNSLVSMYAKTGS---------LREARKVFDATRLRCPVTWTA 214

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++ GY +N           G  E          S  V+ E  M+    + D  T+  ++ 
Sbjct: 215 LIVGYAQN-----------GRGEE---------SLQVYAE--MVHSGCRPDYVTFIGLLF 252

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA-LVTLYWKCGKVNEARDIFNQMPE 349
           AC+++GL   G+  H   ++ +   TP    P + A +V +  + G+++EA ++ +Q   
Sbjct: 253 ACSHAGLVDAGR-AHFKSMQADHGITPG---PDHYACMVDVLGRAGRLDEAMELLDQSTM 308

Query: 350 R-DLVSWNAILSA 361
           + D   W A+L A
Sbjct: 309 KLDATVWKALLGA 321


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/521 (42%), Positives = 321/521 (61%), Gaps = 10/521 (1%)

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           ML   +  + FT+ S+I AC    L    KQ+HA++L+         +  +NN L+ +Y+
Sbjct: 94  MLQHCVTPNAFTFPSLIRACK---LEEEAKQLHAHVLKFGFGGD---TYALNN-LIHVYF 146

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR-ERNLLSWTVMIS 391
             G +++AR +F  M + ++VSW +++S Y   GL+DEA  +FE M  ++N +SW  MI+
Sbjct: 147 AFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIA 206

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCD-YAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
              +     E   LF +MR+E     D +  A  +++C G+GALE G  +H  +  +G  
Sbjct: 207 CFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIV 266

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
                   +I MY +CG ++ A  VF  +      SWN MI     HG G  AI L+++M
Sbjct: 267 LDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEM 326

Query: 511 LKEGIL-PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
            +E ++ PD ITF+ VL+AC H+GLV+EG  YF  M   +GI P ++HY   +DLL RAG
Sbjct: 327 EEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAG 386

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629
           +  EAK VID +P  P A +  ALL  CRIHGN++LG +   ++ +L P ++G YV+L N
Sbjct: 387 RLEEAKKVIDEMPMSPDAAVLGALLGACRIHGNLELGEEVGNRVIELDPENSGRYVILGN 446

Query: 630 MYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQ 689
           MYA+ G+W+  A VRKLM DRGVKKEPG S IE++  V+ F+     HP A+A+Y  + +
Sbjct: 447 MYASCGKWEQVAGVRKLMDDRGVKKEPGFSMIEMEGVVNEFVAGGRDHPLAEAIYAKIYE 506

Query: 690 LVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRI 749
           ++  +R +G+VPDT  VLHD+  +++E  L  HSEKLA+A+GL+K   G T+RV KNLR+
Sbjct: 507 MLESIRVVGFVPDTDGVLHDLVEEERENPLFYHSEKLAIAYGLLKTKRGETLRVTKNLRV 566

Query: 750 CGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           C DCH A K +SKV   +I++RD  RFHHF +G+CSC DYW
Sbjct: 567 CKDCHQASKMISKVYDCDIIIRDRSRFHHFSNGECSCKDYW 607



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 148/345 (42%), Gaps = 48/345 (13%)

Query: 16  YASQLQLCDPRNPIT----------SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLK 65
           Y+  LQ C   N  T             A+ +HAH++  GF    + +N LI +Y     
Sbjct: 91  YSHMLQHCVTPNAFTFPSLIRACKLEEEAKQLHAHVLKFGFGGDTYALNNLIHVYFAFGS 150

Query: 66  LVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYS 125
           L  AR +F  +  P++V+ T+L++ YS    V  A  +F   P K +++V +NAMI  + 
Sbjct: 151 LDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCK-KNSVSWNAMIACFV 209

Query: 126 HNSNGHAAIELFRDMR-RDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLF 184
             +    A  LFR MR    ++ D F   ++LSA   +   E Q M +H  V K+G  L 
Sbjct: 210 KGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGVGALE-QGMWIHKYVEKTGIVLD 268

Query: 185 TSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAA 244
           + +   +I +Y KC           +  A  VF  +  +   SW  M+ G+  +   + A
Sbjct: 269 SKLATTIIDMYCKC---------GCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDA 319

Query: 245 REFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304
                 M E   VA                      D  T+ +V++ACA+SGL   G   
Sbjct: 320 IRLFKEMEEEAMVA---------------------PDSITFVNVLTACAHSGLVEEGWYY 358

Query: 305 HAYLLRTEA-KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
             Y++      PT E        +V L  + G++ EA+ + ++MP
Sbjct: 359 FRYMVDVHGIDPTKEHY----GCMVDLLARAGRLEEAKKVIDEMP 399



 Score = 46.6 bits (109), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 85/186 (45%), Gaps = 16/186 (8%)

Query: 438 RQLHAQLVHSGYDSSLSAGNALITM--YARCGVVEAANCVFNTMPNVDSVSWNAMIAAL- 494
           +Q H+ L+  G  ++  A + + T    ++ G +  A  +F T+PN D+  +N +  A  
Sbjct: 19  KQQHSLLLRLGLSTNNHAMSRIFTFCSLSKHGDINYALKLFTTLPNPDTFLYNTLFKAFF 78

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
                 + ++  Y  ML+  + P+  TF +++ AC     ++E  +        +G   G
Sbjct: 79  SLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACK----LEEEAKQLHAHVLKFGF--G 132

Query: 555 EDHYA--RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
            D YA    I +    G   +A+ V  ++   P+   W +L++G    G +D     A +
Sbjct: 133 GDTYALNNLIHVYFAFGSLDDARRVFCTMS-DPNVVSWTSLVSGYSQWGLVD----EAFR 187

Query: 613 LFQLMP 618
           +F+LMP
Sbjct: 188 VFELMP 193


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 251/723 (34%), Positives = 374/723 (51%), Gaps = 89/723 (12%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           ++V    L+  YS    +  A+ +F       ++ V +N M+  +S   + H   +L R 
Sbjct: 323 EVVVNNALMDMYSKCGCINDAQVIFKLN--NNKNVVSWNTMVGGFSAAGDIHKTFDLLRQ 380

Query: 140 MRRD--DVKPDNFTFTSVLSALALIVEEE--KQCMQMHCTVVKSGTGLFTS----VLNAL 191
           M     D++ D  T   +L+A+ +  EE       ++HC  +K     F      V NA 
Sbjct: 381 MLAGGGDLRADEVT---ILNAVPVCFEESVLPNLKELHCYSLKQE---FVHNNELVANAF 434

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           ++ Y KC S  +         A RVF  +  +   SW  ++ GY ++      R  LD  
Sbjct: 435 VASYAKCGSLSY---------AHRVFCSIRSKTVNSWNALIGGYSQSS---DPRLSLDAY 482

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
                               +M    +  D FT  S++SAC+     +LGK+VH  ++R 
Sbjct: 483 -------------------FQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRN 523

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
                                                ERD   + ++LS Y+  G +  A
Sbjct: 524 RL-----------------------------------ERDSFVYISLLSLYIHCGELSTA 548

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
             LF+AM ++ L+SW  M++G  QNG+ E  L LF QM L G +PC+ +      +C+ L
Sbjct: 549 HVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLL 608

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
            +L  GR+ H   +    + +     ++I MYA+ G V  +  VFN +      SWNAM+
Sbjct: 609 PSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMV 668

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
              G HG    AI+L+E+M + G  PD +TFL VL+ACNH+GLV EG  Y + M   +G+
Sbjct: 669 MGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGM 728

Query: 552 PPGEDHYARFIDLLCRAGKFSEA-KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
            P   HYA  ID+L RAGK  EA K   + +  +P   IW  LL+ CRIH N+++G + A
Sbjct: 729 NPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIA 788

Query: 611 EQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVF 670
            +LF   P     YVLLSN+YA  G+WD+  +VR+ M++  ++K+ GCSWIE++ KV  F
Sbjct: 789 AKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDAGCSWIELNGKVFSF 848

Query: 671 LVDDTA---HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLA 727
           +  +++     E ++++  LE+   E+ K+GY PDT  V HD+  ++K   L  HSEKLA
Sbjct: 849 VAGESSLDGFEEIKSLWSVLER---EIGKMGYRPDTSSVQHDLSEEEKTEQLRGHSEKLA 905

Query: 728 VAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCG 787
           + +GL++   G T+RV KNLRIC DCHNA K +SKV+ REIVVRD KRFHHF++G CSCG
Sbjct: 906 ITYGLIRTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGFCSCG 965

Query: 788 DYW 790
           DYW
Sbjct: 966 DYW 968



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 141/526 (26%), Positives = 229/526 (43%), Gaps = 81/526 (15%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D V  T +I  YS   +   +R +F+   L+ ++   +NA+I++YS N   H  +E+F  
Sbjct: 116 DDVLCTRVITMYSMCGSPDDSRSVFD--ALRKKNLFQWNAVISSYSRNELYHNVLEMFVK 173

Query: 140 M-RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
           M     + PDNFTF  V+ A A  V E +  + +H  VVK+       V NAL+S Y   
Sbjct: 174 MITESGLLPDNFTFPCVVKACA-GVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFY--- 229

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
                  +   +  A RVF  MPER+ +SW +M+  +  N           G+SE   + 
Sbjct: 230 ------GTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDN-----------GLSEECFLL 272

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
              ++        K   +    D  T  +V+  CA      +GK VH   +    K + +
Sbjct: 273 LGQMME-------KDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAM----KLSLD 321

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
             + VNNAL+ +Y KCG +N+A+ IF     +++VSWN ++  + +AG I +   L   M
Sbjct: 322 KEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQM 381

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
                         LA  G                 +  +     A+  C     L N +
Sbjct: 382 --------------LAGGG---------------DLRADEVTILNAVPVCFEESVLPNLK 412

Query: 439 QLHA-----QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
           +LH      + VH   ++ L A NA +  YA+CG +  A+ VF ++ +    SWNA+I  
Sbjct: 413 ELHCYSLKQEFVH---NNELVA-NAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGG 468

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY---G 550
             Q  +   +++ Y QM   G+LPD  T  ++LSAC+    +K G+     +HG      
Sbjct: 469 YSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKE----VHGLIIRNR 524

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           +      Y   + L    G+ S A  + D++  K     W  ++ G
Sbjct: 525 LERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVS-WNTMVNG 569



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 95/399 (23%), Positives = 178/399 (44%), Gaps = 51/399 (12%)

Query: 50  EHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPL 109
           E ++  L +++C SLK         E    + +     +A+Y+   ++  A  +F    +
Sbjct: 405 ESVLPNLKELHCYSLK--------QEFVHNNELVANAFVASYAKCGSLSYAHRVF--CSI 454

Query: 110 KMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC 169
           + +    +NA+I  YS +S+   +++ +  M+   + PD FT  S+LSA + I +  K  
Sbjct: 455 RSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQI-KSLKLG 513

Query: 170 MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWT 229
            ++H  ++++     + V  +L+S+Y+ C           +  A  +FD M ++  +SW 
Sbjct: 514 KEVHGLIIRNRLERDSFVYISLLSLYIHC---------GELSTAHVLFDAMEDKTLVSWN 564

Query: 230 TMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVI 289
           TM+ GY++N + + A                           +M++  +Q  E +  SV 
Sbjct: 565 TMVNGYLQNGFPERALSLFR----------------------QMVLYGVQPCEISMMSVF 602

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
            AC+     RLG++ H Y L+   +     +  V    + +Y K G V E+  +FN + E
Sbjct: 603 GACSLLPSLRLGREAHGYALKCLLEDNAFIACSV----IDMYAKNGSVMESFKVFNGLKE 658

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRER----NLLSWTVMISGLAQNGYGEEGLKL 405
           R + SWNA++  Y   G   EA  LFE M+      + L++  +++    +G   EGL  
Sbjct: 659 RSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTY 718

Query: 406 FSQMR-LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
             QM+ L G  P    +A  I      G L+   ++  +
Sbjct: 719 LDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEALKIATE 757



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 164/406 (40%), Gaps = 52/406 (12%)

Query: 224 DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL--KMLMLRIQL- 280
           D++  T ++T Y      D +R   D + +     WNA+IS Y   EL   +L + +++ 
Sbjct: 116 DDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMI 175

Query: 281 -------DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
                  D FT+  V+ ACA     ++G  VH  +++T                      
Sbjct: 176 TESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRL-------------------- 215

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
                   D+F        VS NA++S Y + G + +A  +F+ M ERNL+SW  MI   
Sbjct: 216 ------VEDVF--------VS-NALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVF 260

Query: 394 AQNGYGEEGLKLFSQMRLE----GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           + NG  EE   L  QM  +     F P     A  +  CA    +  G+ +H   +    
Sbjct: 261 SDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSL 320

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
           D  +   NAL+ MY++CG +  A  +F    N + VSWN M+      G+  +  +L  Q
Sbjct: 321 DKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQ 380

Query: 510 MLKEG--ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR 567
           ML  G  +  D +T L  +  C    ++   +           +   E     F+    +
Sbjct: 381 MLAGGGDLRADEVTILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAK 440

Query: 568 AGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
            G  S A  V  S+  K +   W AL+ G     +  L + A  Q+
Sbjct: 441 CGSLSYAHRVFCSIRSK-TVNSWNALIGGYSQSSDPRLSLDAYFQM 485



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 8/107 (7%)

Query: 437 GRQLHAQLVHSGYDSSLSAGNAL----ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
           GR++H QLV     + LS  + L    ITMY+ CG  + +  VF+ +   +   WNA+I+
Sbjct: 100 GRKIH-QLVSE--SARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVIS 156

Query: 493 ALGQHGNGARAIELYEQMLKE-GILPDRITFLTVLSACNHAGLVKEG 538
           +  ++      +E++ +M+ E G+LPD  TF  V+ AC     V+ G
Sbjct: 157 SYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVG 203


>gi|356503769|ref|XP_003520676.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Glycine max]
          Length = 874

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 243/717 (33%), Positives = 387/717 (53%), Gaps = 61/717 (8%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV- 145
           L++ Y+   +   A ++FN+ P   RD   +N +I+A   +S    A  LFR+M+  D  
Sbjct: 206 LVSLYAKHASFHAALKLFNQIP--RRDIASWNTIISAALQDSLYDTAFRLFRNMQATDAF 263

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVS 205
           + D+FT + +L+A A ++E +    Q+H   VK G     +V N LI  Y K  +     
Sbjct: 264 RVDDFTLSILLTASASLMEGQ----QVHAHAVKLGLETDLNVGNGLIGFYSKFGN----- 314

Query: 206 SRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265
               +     +F+ M  RD ++WT M+T Y++   ++ A +  D M E   V++N +++G
Sbjct: 315 ----VDDVEWLFEGMRVRDVITWTEMVTAYMEFGLVNLALKVFDEMPEKNSVSYNTVLAG 370

Query: 266 YVHRE---------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
           +   E         ++M+   ++L +F+ TSV+ AC   G +++ KQVH + ++      
Sbjct: 371 FCRNEQGFEAMRLFVRMVEEGLELTDFSLTSVVDACGLLGDYKVSKQVHGFAVKFGFGSN 430

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
                 V  AL+ +Y +CG++ +A  +F        + W                     
Sbjct: 431 GY----VEAALLDMYTRCGRMVDAGKMF--------LRWE-------------------- 458

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD-YAFAGAITSCAGLGALE 435
            + E + + WT MI G A+NG  EE + LF   R +G    D  A A  +  C  +G L+
Sbjct: 459 -LEEFSSVVWTAMICGYARNGQPEEAIYLFHVGRSDGKVIMDEVAAASMLGLCGTIGHLD 517

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
            G+Q+H  ++  G   +L  GNA+++MY +CG V+ A  VF  MP  D V+WN +I+   
Sbjct: 518 MGKQIHCHVIKCGLGFNLEVGNAVVSMYFKCGSVDDAMKVFGDMPCTDIVTWNTLISGNL 577

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL--VKEGRRYFETMHGPYGIPP 553
            H  G RA+E++ +ML EGI P+++TF+ ++SA     L  V + R  F +M   Y I P
Sbjct: 578 MHRQGDRALEIWVEMLGEGIKPNQVTFVLIISAYRQTNLNLVDDCRNLFNSMRTVYQIEP 637

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
              HYA FI +L   G   EA + I+++PF+PSA +W  LL GCR+H N  +G  AA+ +
Sbjct: 638 TSRHYASFISVLGHWGLLQEALETINNMPFQPSALVWRVLLDGCRLHKNELIGKWAAQNI 697

Query: 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVD 673
             L P    T++L+SN+Y+  GRWD +  VR+ MR++G +K P  SWI  + K++ F   
Sbjct: 698 LALEPKDPSTFILVSNLYSASGRWDRSEMVREDMREKGFRKHPAQSWIVCEKKINSFYPR 757

Query: 674 DTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLM 733
           D +HP+ + + + LE L+LE  K+GY PDT FVLH++E   K+  L  HS KLA  +G++
Sbjct: 758 DRSHPQEKDIQRGLEILILECLKIGYEPDTSFVLHEVEEHHKKIFLFHHSAKLAATYGIL 817

Query: 734 KLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
               G  +R++KN+ +CGDCH   K+ S V  R+I +RD   FH F +G+CSC D W
Sbjct: 818 MTKPGKPIRIVKNILLCGDCHAFLKYASIVTKRDIFLRDSSGFHCFSNGQCSCKDCW 874



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 158/625 (25%), Positives = 278/625 (44%), Gaps = 81/625 (12%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA 90
           + LA++VHA ++    +   H+ N LI  Y K     +A  LF  +P P++V+ TTLI+ 
Sbjct: 80  THLAKTVHATLLKRD-EEDTHLSNALISTYLKLNLFPHALRLFLSLPSPNVVSYTTLISF 138

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF-RDMRRDDVKPDN 149
            S                 K R                  H A+ LF R   R  + P+ 
Sbjct: 139 LS-----------------KHRQ-----------------HHALHLFLRMTTRSHLPPNE 164

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           +T+ +VL+A + ++      +Q+H   +K+       V NAL+S+Y K  S         
Sbjct: 165 YTYVAVLTACSSLLHHFHFGLQLHAAALKTAHFDSPFVANALVSLYAKHAS--------- 215

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
             AA ++F+++P RD  SW T+++  +++   D A      M                  
Sbjct: 216 FHAALKLFNQIPRRDIASWNTIISAALQDSLYDTAFRLFRNMQATDA------------- 262

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
                    ++D+FT + +++A A+      G+QVHA+      K   E  L V N L+ 
Sbjct: 263 --------FRVDDFTLSILLTASAS---LMEGQQVHAH----AVKLGLETDLNVGNGLIG 307

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
            Y K G V++   +F  M  RD+++W  +++AY+  GL++ A  +F+ M E+N +S+  +
Sbjct: 308 FYSKFGNVDDVEWLFEGMRVRDVITWTEMVTAYMEFGLVNLALKVFDEMPEKNSVSYNTV 367

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           ++G  +N  G E ++LF +M  EG +  D++    + +C  LG  +  +Q+H   V  G+
Sbjct: 368 LAGFCRNEQGFEAMRLFVRMVEEGLELTDFSLTSVVDACGLLGDYKVSKQVHGFAVKFGF 427

Query: 450 DSSLSAGNALITMYARCGVVEAANCVF--NTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
            S+     AL+ MY RCG +  A  +F    +    SV W AMI    ++G    AI L+
Sbjct: 428 GSNGYVEAALLDMYTRCGRMVDAGKMFLRWELEEFSSVVWTAMICGYARNGQPEEAIYLF 487

Query: 508 EQMLKEG-ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
                +G ++ D +   ++L  C   G +  G++         G+    +     + +  
Sbjct: 488 HVGRSDGKVIMDEVAAASMLGLCGTIGHLDMGKQ-IHCHVIKCGLGFNLEVGNAVVSMYF 546

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA-AEQLFQLMPHHAGTYV 625
           + G   +A  V   +P       W  L++G  +H   D  ++   E L + +  +  T+V
Sbjct: 547 KCGSVDDAMKVFGDMPCT-DIVTWNTLISGNLMHRQGDRALEIWVEMLGEGIKPNQVTFV 605

Query: 626 LLSNMY--ANLGRWDDAARVRKLMR 648
           L+ + Y   NL   DD   +   MR
Sbjct: 606 LIISAYRQTNLNLVDDCRNLFNSMR 630



 Score =  135 bits (340), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 107/410 (26%), Positives = 189/410 (46%), Gaps = 44/410 (10%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + VHAH +  G +   ++ N LI  Y K   +     LF+ +   D++  T ++ AY  
Sbjct: 283 GQQVHAHAVKLGLETDLNVGNGLIGFYSKFGNVDDVEWLFEGMRVRDVITWTEMVTAYME 342

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
              V LA ++F++ P K  ++V YN ++  +  N  G  A+ LF  M  + ++  +F+ T
Sbjct: 343 FGLVNLALKVFDEMPEK--NSVSYNTVLAGFCRNEQGFEAMRLFVRMVEEGLELTDFSLT 400

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           SV+ A  L+  + K   Q+H   VK G G    V  AL+ +Y +C        R +    
Sbjct: 401 SVVDACGLL-GDYKVSKQVHGFAVKFGFGSNGYVEAALLDMYTRC-------GRMVDAGK 452

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAA-REFLDGMSENVGVAWNALISGYVHRELK 272
             +  E+ E   + WT M+ GY +N   + A   F  G S+                   
Sbjct: 453 MFLRWELEEFSSVVWTAMICGYARNGQPEEAIYLFHVGRSDG------------------ 494

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
               ++ +DE    S++  C   G   +GKQ+H ++++        F+L V NA+V++Y+
Sbjct: 495 ----KVIMDEVAAASMLGLCGTIGHLDMGKQIHCHVIKCGLG----FNLEVGNAVVSMYF 546

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR----ERNLLSWTV 388
           KCG V++A  +F  MP  D+V+WN ++S  +     D A  ++  M     + N +++ +
Sbjct: 547 KCGSVDDAMKVFGDMPCTDIVTWNTLISGNLMHRQGDRALEIWVEMLGEGIKPNQVTFVL 606

Query: 389 MISGLAQNGYG--EEGLKLFSQMR-LEGFKPCDYAFAGAITSCAGLGALE 435
           +IS   Q      ++   LF+ MR +   +P    +A  I+     G L+
Sbjct: 607 IISAYRQTNLNLVDDCRNLFNSMRTVYQIEPTSRHYASFISVLGHWGLLQ 656


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 250/738 (33%), Positives = 397/738 (53%), Gaps = 92/738 (12%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLK---LVYARTLFDEIPQPDIVARTTLIAAY 91
           R +HA MI +G     + +++LI+    S     L YA ++F+ I +P+++         
Sbjct: 7   RMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLL--------- 57

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                                    +N M   ++ +S+  +A++L+  M    + P+++T
Sbjct: 58  ------------------------IWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYT 93

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           F  +L + A   +  K+  Q+H  V+K G  L   V  +LIS+YV+            + 
Sbjct: 94  FPFLLKSCAK-SKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQ---------NGRLE 143

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR-- 269
            A +VFDE P RD +S+T ++ GY    Y++ A++  D +     V+WNA+ISGY     
Sbjct: 144 DAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGN 203

Query: 270 -----EL--KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
                EL   M+   ++ DE T  +V+SACA SG   LG+QVH+++           +L 
Sbjct: 204 YKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGS----NLK 259

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
           + NAL+ LY KCG+                               ++ A  LFE +  ++
Sbjct: 260 IVNALIDLYSKCGE-------------------------------LETACGLFEGLPYKD 288

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
           ++SW  +I G       +E L LF +M   G  P D      + +CA LGA++ GR +H 
Sbjct: 289 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHV 348

Query: 443 QLVH--SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
            +     G  ++ S   +LI MYA+CG +EAA+ VFN++ +    SWNAMI     HG  
Sbjct: 349 YIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRA 408

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
             + +++ +M K GI PD ITF+ +LSAC+H+G++  GR  F +M   Y + P  +HY  
Sbjct: 409 DASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGC 468

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
            IDLL  +G F EA+++I+++  +P   IW +LL  C++HGN++LG   A+ L ++ P +
Sbjct: 469 MIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPEN 528

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEA 680
            G+YVLLSN+YA  GRW++ A  R L+ D+G+KK PGCS IE+D+ VH F++ D  HP  
Sbjct: 529 PGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRN 588

Query: 681 QAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT 740
           + +Y  LE++ + + + G+VPDT  VL +ME + KE AL  HSEKLA+AFGL+    G  
Sbjct: 589 REIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTK 648

Query: 741 VRVLKNLRICGDCHNAFK 758
           + ++KNLR+C +CH A+K
Sbjct: 649 LTIVKNLRVCRNCHEAYK 666



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 147/344 (42%), Gaps = 69/344 (20%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R VH+ +   GF     I+N LID+Y K  +L  A  LF+ +P  D+++  TLI  Y+
Sbjct: 241 LGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYT 300

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
              ++ L +E                              A+ LF++M R    P++ T 
Sbjct: 301 ---HMNLYKE------------------------------ALLLFQEMLRSGETPNDVTM 327

Query: 153 TSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
            S+L A A L   +  + + ++      G    +S+  +LI +Y KC           + 
Sbjct: 328 LSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGD---------IE 378

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
           AA +VF+ +  +   SW  M+ G+  +   DA+ +    M +N                 
Sbjct: 379 AAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKN----------------- 421

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                 I+ D+ T+  ++SAC++SG+  LG+ +   + + + K TP+  L     ++ L 
Sbjct: 422 -----GIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQ-DYKMTPK--LEHYGCMIDLL 473

Query: 332 WKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSL 374
              G   EA ++ N M  E D V W ++L A    G ++  +S 
Sbjct: 474 GHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESF 517


>gi|15239085|ref|NP_201360.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180382|sp|Q9LSL8.1|PP446_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65570
 gi|8978285|dbj|BAA98176.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010689|gb|AED98072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 251/786 (31%), Positives = 407/786 (51%), Gaps = 116/786 (14%)

Query: 11  TLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYAR 70
           T  + ++  L+ C     I+    +++ AHM+ SGF P E   ++L+D   K   + YAR
Sbjct: 63  TTTHNFSQLLRQCIDERSISG--IKTIQAHMLKSGF-PAEISGSKLVDASLKCGDIDYAR 119

Query: 71  TLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNG 130
            +FD + +  IV                                  +N++I     +   
Sbjct: 120 QVFDGMSERHIVT---------------------------------WNSLIAYLIKHRRS 146

Query: 131 HAAIELFRDMRRDDVKPDNFTFTSVLSALA-LIVEEEKQCMQMHCTVVKSG---TGLFTS 186
             A+E++R M  ++V PD +T +SV  A + L +E+E Q  + H   V  G   + +F  
Sbjct: 147 KEAVEMYRLMITNNVLPDEYTLSSVFKAFSDLSLEKEAQ--RSHGLAVILGLEVSNVF-- 202

Query: 187 VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV-KNDYLDAAR 245
           V +AL+ +YVK     F  +R     A+ V D + E+D +  T ++ GY  K +  +A +
Sbjct: 203 VGSALVDMYVK-----FGKTRE----AKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVK 253

Query: 246 EFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
            F                         ML+ ++Q +E+TY SV+ +C N      GK +H
Sbjct: 254 AFQ-----------------------SMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIH 290

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365
             ++    K   E +L    +L+T+Y +C                               
Sbjct: 291 GLMV----KSGFESALASQTSLLTMYLRCS------------------------------ 316

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425
            L+D++  +F+ +   N +SWT +ISGL QNG  E  L  F +M  +  KP  +  + A+
Sbjct: 317 -LVDDSLRVFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSAL 375

Query: 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV 485
             C+ L   E GRQ+H  +   G+D    AG+ LI +Y +CG  + A  VF+T+  VD +
Sbjct: 376 RGCSNLAMFEEGRQIHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDMARLVFDTLSEVDVI 435

Query: 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETM 545
           S N MI +  Q+G G  A++L+E+M+  G+ P+ +T L+VL ACN++ LV+EG   F++ 
Sbjct: 436 SLNTMIYSYAQNGFGREALDLFERMINLGLQPNDVTVLSVLLACNNSRLVEEGCELFDSF 495

Query: 546 HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDL 605
                I    DHYA  +DLL RAG+  EA +++ +    P   +W  LL+ C++H  +++
Sbjct: 496 RKD-KIMLTNDHYACMVDLLGRAGRLEEA-EMLTTEVINPDLVLWRTLLSACKVHRKVEM 553

Query: 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDN 665
             +   ++ ++ P   GT +L+SN+YA+ G+W+    ++  M+D  +KK P  SW+E++ 
Sbjct: 554 AERITRKILEIEPGDEGTLILMSNLYASTGKWNRVIEMKSKMKDMKLKKNPAMSWVEINK 613

Query: 666 KVHVFLVDDT-AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSE 724
           + H F+  D  +HP ++ + + LE+L+ + + LGYV D   V  DME   KE +L  HSE
Sbjct: 614 ETHTFMAGDLFSHPNSEQILENLEELIKKSKDLGYVEDKSCVFQDMEETAKERSLHQHSE 673

Query: 725 KLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKC 784
           KLA+AF + +  GG ++R+LKNLR+C DCH+  K +S+V+ REI+ RD KRFHHFRDG C
Sbjct: 674 KLAIAFAVWRNVGG-SIRILKNLRVCVDCHSWIKIVSRVMKREIICRDSKRFHHFRDGSC 732

Query: 785 SCGDYW 790
           SCGDYW
Sbjct: 733 SCGDYW 738


>gi|28876027|gb|AAO60036.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 704

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/574 (38%), Positives = 318/574 (55%), Gaps = 44/574 (7%)

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           + AAR +F+ +P R+ +SW  +  GY+KN  L  AR+  D M E     WNA+++G  + 
Sbjct: 158 LTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNL 217

Query: 270 E---------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
                     L M    +  DEF   SV   CA       G+QVHAY++R+      +  
Sbjct: 218 GFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGL----DRD 273

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           + V ++L  +Y +CG + E   +   +P   +VS N I                      
Sbjct: 274 MCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTI---------------------- 311

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
                    I+G  QNG  E  L+ F  MR  G       F  AI+SC+ L AL  G+Q+
Sbjct: 312 ---------IAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQI 362

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           H Q++ +G D  +     L+ MY+RCG +  +  VF      D+   +AMI+A G HG+G
Sbjct: 363 HGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHG 422

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
            +AIEL++QM+  G  P  +TFL +L AC+H+GL +EG   FE M   YG+ P   HY  
Sbjct: 423 QKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTC 482

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
            +DLL R+G   EA+ +I S+P  P   IW+ LL+ C+   N D+  + A+++ +L PH 
Sbjct: 483 VVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHD 542

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEA 680
           + +YVLLSN+ A   RW D + VRK MRD  V+KEPG SW+E+   +H F   D +HP  
Sbjct: 543 SASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQ 602

Query: 681 QAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT 740
           + + + LE+++ ++R+ GY PD   VLHDME ++KE +LS HSEKLA+AF  + LP G  
Sbjct: 603 KEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVP 662

Query: 741 VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGK 774
           +RV+KNLR+C DCH A K MS+V GREIVVRD K
Sbjct: 663 IRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDDK 696



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 132/239 (55%), Gaps = 4/239 (1%)

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
           +Q+HA+   T    T  F+    N L+  Y   G +  AR++F ++P R+++SWN +   
Sbjct: 127 RQLHAFAA-TSGAATDRFT---ANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGG 182

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
           Y+  G +  A+ LF+ M ERN+ +W  M++GL   G+ EE L  F  MR EG  P ++  
Sbjct: 183 YIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGL 242

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
                 CAGL  +  GRQ+HA +V SG D  +  G++L  MY RCG ++    V   +P+
Sbjct: 243 GSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPS 302

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
           +  VS N +IA   Q+G+   A+E +  M   G+  D +TF++ +S+C+    + +G++
Sbjct: 303 LSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQ 361



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 111/481 (23%), Positives = 196/481 (40%), Gaps = 78/481 (16%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           R +HA   +SG        N L+  Y     L  AR LF+ IP+ ++++   L   Y  +
Sbjct: 127 RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKN 186

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
            ++  AR++F++ P   R+   +NAM+   ++      ++  F DMRR+ + PD F   S
Sbjct: 187 GDLGGARKLFDEMP--ERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGS 244

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           V    A +  +     Q+H  VV+SG      V ++L  +Y++C           +    
Sbjct: 245 VFRCCAGL-RDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRC---------GCLQEGE 294

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
            V   +P    +S  T++ G  +N   + A E+   M  +VGVA                
Sbjct: 295 AVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYF-CMMRSVGVA---------------- 337

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
                 D  T+ S IS+C++      G+Q+H  +++          +PV   LV +Y +C
Sbjct: 338 -----ADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKV----VPVMTCLVHMYSRC 388

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
           G + ++  +F      D    +A++SAY                                
Sbjct: 389 GCLGDSERVFFGYCGSDTFLLSAMISAY-------------------------------G 417

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSL 453
            +G+G++ ++LF QM   G +P D  F   + +C+  G  E G      +  + G   S+
Sbjct: 418 FHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSV 477

Query: 454 SAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN-------GARAIE 505
                ++ +  R G ++ A  +  +MP   D V W  +++A     N         R IE
Sbjct: 478 KHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIE 537

Query: 506 L 506
           L
Sbjct: 538 L 538


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 240/674 (35%), Positives = 366/674 (54%), Gaps = 72/674 (10%)

Query: 120 MITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE--EEKQCMQMHCTVV 177
           MI+ +  NS    +I +F DM   +     F  T+V++ L  + E  E K  MQ+ C  +
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGN--GPRFDLTTVIAVLPAVAELQELKLGMQILCLAI 58

Query: 178 KSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK 237
           K G     S+L  LIS++ KC           +  AR +F E+ ++D +S   M++G+  
Sbjct: 59  KCGFYSHVSLLTGLISLFSKC---------GEVEIARLLFGEIRKKDLISCNAMISGFTC 109

Query: 238 N-DYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSG 296
           N +  D+ R F + +S    V+ + ++            L      F + S +  C +  
Sbjct: 110 NGETEDSVRLFKELLSSGERVSSSTIVG-----------LIPVYSPFGH-SYLCNCIHGF 157

Query: 297 LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWN 356
             +LG   H+                V+ AL T+Y +   +NE   IF            
Sbjct: 158 CVKLGIVSHS---------------SVSTALTTVYCR---LNEM--IF------------ 185

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
                         A+ LF+   E+ L SW  MISG  QNG  +  + LF  M+     P
Sbjct: 186 --------------ARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNP 231

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
                   +++CA +GAL  G  +H+ +  + ++S++    ALI MYA+CG +  A  +F
Sbjct: 232 NPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELF 291

Query: 477 NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536
           + MP  + V+WNAMI+  G HG+G  A++L+  ML   + P  +TFL+VL AC+HAGLVK
Sbjct: 292 DLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVK 351

Query: 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           EG   F TM   +G  P  +HYA  +D+L RAG+  +A + I ++P +P  P+W ALL  
Sbjct: 352 EGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGA 411

Query: 597 CRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEP 656
           C IH + +L   A+E+LF+L P + G YVL+SN+Y+   ++  AA VR++ + + + K P
Sbjct: 412 CMIHKDTNLAHVASEKLFELDPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTP 471

Query: 657 GCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKE 716
           GC+ IE+    HVF   D +HP+++A+Y  L++L  +M + G+  +T  VLHD+E ++KE
Sbjct: 472 GCTLIEIGQVPHVFTSGDQSHPQSKAIYAELDKLTGKMTEAGFQTETTTVLHDLEEEEKE 531

Query: 717 YALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRF 776
             +  HSEKLA+AFGL+    GA +R++KNLR+C DCHN  KF+SK+  R IVVRD  RF
Sbjct: 532 LTMKVHSEKLAIAFGLISTEPGAEIRIIKNLRVCLDCHNWTKFLSKITKRVIVVRDANRF 591

Query: 777 HHFRDGKCSCGDYW 790
           HHF+DG CSCGDYW
Sbjct: 592 HHFKDGLCSCGDYW 605



 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 110/445 (24%), Positives = 193/445 (43%), Gaps = 73/445 (16%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           T LI+ +S    V++AR +F +  ++ +D +  NAMI+ ++ N     ++ LF+++    
Sbjct: 70  TGLISLFSKCGEVEIARLLFGE--IRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSG 127

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
            +  + T   ++   +        C  +H   VK G    +SV  AL +VY +     F 
Sbjct: 128 ERVSSSTIVGLIPVYSPF-GHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIF- 185

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                   AR++FDE  E+   SW  M++G  +N   DAA      M +N          
Sbjct: 186 --------ARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKN---------- 227

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
                        +  +  T TS++SACA  G   LG+ VH+ +         E ++ V+
Sbjct: 228 ------------NVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRF----ESNVYVS 271

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
            AL+ +Y KCG +  AR++F+ MPE++ V+WNA++S Y   GL                 
Sbjct: 272 TALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGY---GL----------------- 311

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
                      +G+G+E LKLF  M     KP    F   + +C+  G ++ G  +   +
Sbjct: 312 -----------HGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTM 360

Query: 445 VHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGAR 502
           VH  G++        ++ +  R G ++ A      MP       W A++ A   H +   
Sbjct: 361 VHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTNL 420

Query: 503 AIELYEQMLKEGILPDRITFLTVLS 527
           A    E++ +  + P+ I +  ++S
Sbjct: 421 AHVASEKLFE--LDPENIGYYVLMS 443



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 14/112 (12%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + ++   T LI  Y+   ++ +ARE+F+  P K  + V +NAMI+ Y  + +G  A++LF
Sbjct: 265 ESNVYVSTALIDMYAKCGSITVARELFDLMPEK--NEVTWNAMISGYGLHGHGQEALKLF 322

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLN 189
            DM    VKP   TF SVL A +            H  +VK G G+F ++++
Sbjct: 323 YDMLSSSVKPTGLTFLSVLYACS------------HAGLVKEGDGIFHTMVH 362


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/550 (40%), Positives = 318/550 (57%), Gaps = 53/550 (9%)

Query: 259 WNALISGYVHRE--------------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304
           WN LI  +V                 ++M    +Q D  T+  ++ + A+  L  LG+ V
Sbjct: 27  WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSV 86

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVS 364
           HA +LR        F L +                  D F Q          +++S Y S
Sbjct: 87  HAQILR--------FGLAI------------------DPFVQ---------TSLISMYSS 111

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF---KPCDYAF 421
           +GL+D A++LF  M ERN++SW+ MI+G  + G  +E L LF +M++ G    +P ++  
Sbjct: 112 SGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTM 171

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM-P 480
           +G + +C  LGALE+G+  HA +   G    +  G ALI MYA+CG VE A  VF+ + P
Sbjct: 172 SGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGP 231

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
           N D ++W+AMI+ L  HG     + L+ +M+ +G+ P+ +TFL V  AC H GLV EG+ 
Sbjct: 232 NKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKD 291

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
           Y   M   Y I P   HY   +DL  RAG+  EA +V+ S+P +P   +W ALL+G R+H
Sbjct: 292 YLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMH 351

Query: 601 GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSW 660
           G+I+    A ++L +L P ++G YVLLSN+YA  GRW+D   VR LM   G+KK PGCS 
Sbjct: 352 GDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSL 411

Query: 661 IEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALS 720
           IEV   +H F V D +HPE + ++  LE+++  ++  GYV +TK VL D++ + KE ALS
Sbjct: 412 IEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALS 471

Query: 721 THSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFR 780
            HSEKLA+A+G +K   G  +R++KNLRIC DCH A K +SKV  REI+VRD  RFHHF 
Sbjct: 472 LHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFT 531

Query: 781 DGKCSCGDYW 790
            G CSC DYW
Sbjct: 532 QGLCSCRDYW 541



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 105/421 (24%), Positives = 180/421 (42%), Gaps = 96/421 (22%)

Query: 113 DTVFYNAMITAYSH-----NSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEK 167
           ++  +N +I A+           H+ I +F  MR   V+PD  TF  +L + A       
Sbjct: 23  ESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFA-----SP 77

Query: 168 QCMQM----HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER 223
             + +    H  +++ G  +   V  +LIS+Y         SS  L+  AR +F  MPER
Sbjct: 78  SLLHLGRSVHAQILRFGLAIDPFVQTSLISMY---------SSSGLVDMARNLFAVMPER 128

Query: 224 DELSWTTMMTGYVK-NDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLR-IQLD 281
           + +SW+ M+ GYV+   Y +A   F                     RE++ML +  ++ +
Sbjct: 129 NVISWSCMINGYVRCGQYKEALALF---------------------REMQMLGVNDVRPN 167

Query: 282 EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN----NALVTLYWKCGKV 337
           EFT + V++AC   G    GK  HAY+ +          +PV+     AL+ +Y KCG V
Sbjct: 168 EFTMSGVLAACGRLGALEHGKWAHAYIDKC--------GMPVDVVLGTALIDMYAKCGSV 219

Query: 338 NEARDIFNQM-PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
            +A  +F+ + P +D+++W+A++S     GL                             
Sbjct: 220 EKATWVFSNLGPNKDVMAWSAMISGLAMHGL----------------------------- 250

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSA 455
              EE + LFS+M  +G +P    F     +C   G +  G+    ++        ++  
Sbjct: 251 --AEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQH 308

Query: 456 GNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
              ++ +Y R G ++ A  V  +MP   D + W A+++    HG+    IE  E  LK+ 
Sbjct: 309 YGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGD----IETCELALKKL 364

Query: 515 I 515
           I
Sbjct: 365 I 365



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 162/368 (44%), Gaps = 52/368 (14%)

Query: 24  DPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ----P 79
            P  P  S +  S+   M   G +P  H    L+  +     L   R++  +I +     
Sbjct: 40  QPTGPTHSPI--SIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAI 97

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D   +T+LI+ YS+S  V +AR +F   P   R+ + ++ MI  Y        A+ LFR+
Sbjct: 98  DPFVQTSLISMYSSSGLVDMARNLFAVMP--ERNVISWSCMINGYVRCGQYKEALALFRE 155

Query: 140 MRR---DDVKPDNFTFTSVLSALALI--VEEEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
           M+    +DV+P+ FT + VL+A   +  +E  K     H  + K G  +   +  ALI +
Sbjct: 156 MQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWA---HAYIDKCGMPVDVVLGTALIDM 212

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEM-PERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
           Y KC S         +  A  VF  + P +D ++W+ M++G             + G++E
Sbjct: 213 YAKCGS---------VEKATWVFSNLGPNKDVMAWSAMISGLA-----------MHGLAE 252

Query: 254 NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
                   L S       KM+   ++ +  T+ +V  AC + GL   GK    YL R   
Sbjct: 253 EC----VGLFS-------KMINQGVRPNAVTFLAVFCACVHGGLVSEGKD---YLRRMTE 298

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAK 372
             +   ++     +V LY + G++ EA ++   MP E D++ W A+LS     G I+  +
Sbjct: 299 DYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCE 358

Query: 373 SLFEAMRE 380
              + + E
Sbjct: 359 LALKKLIE 366


>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
          Length = 696

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 247/687 (35%), Positives = 361/687 (52%), Gaps = 84/687 (12%)

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMH 173
            V Y A I+  + ++    A+  F  M R  ++P++FTF S   A A          Q+H
Sbjct: 84  VVSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRSAAGTQLH 143

Query: 174 CTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMT 233
              ++ G              +V C +         +  ARR+FDEMP R+         
Sbjct: 144 ALALRFGY--------LPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNV-------- 187

Query: 234 GYVKNDYLDAAREFLDGMSENVGVAWNALISGYV--HRELKMLMLRIQL-------DEFT 284
                                  VAWNA+++  V   R L+ +     L       +  +
Sbjct: 188 -----------------------VAWNAVMTNAVLDGRPLETVEAYFGLRGAGGMPNVVS 224

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
             +  +ACA      LG+Q + ++    AK      + V+N++V  Y KC  V +AR   
Sbjct: 225 VCAFFNACAGMTNLSLGEQFYGFV----AKCGFGKDVSVSNSVVDFYGKCRCVGKAR--- 277

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
                                       ++F+ M  RN +SW  M+   AQNG  EE   
Sbjct: 278 ----------------------------AVFDGMGVRNNVSWCSMVVAYAQNGAEEEAFF 309

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           ++   R  G +P D+  +  +T+CAGL  L+ GR LHA  V S  DS++   +AL+ MY 
Sbjct: 310 VYLGARRAGEEPTDFMVSSVLTTCAGLLGLDLGRALHAVAVRSCIDSNIFVASALVDMYG 369

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM-LKEGILPDRITFL 523
           +CG +E A  VF  MP  + V+WNAMI      G+   A+ ++++M + +   P+ IT +
Sbjct: 370 KCGGIEDAEQVFFEMPQRNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLV 429

Query: 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF 583
            VL+AC+  GL KEG   F+TM   +GI P  +HYA  +DLLCRAG    A  +I  +P 
Sbjct: 430 NVLTACSRGGLTKEGYELFQTMKWRFGIEPRIEHYACVVDLLCRAGMEERAYKIIQGMPM 489

Query: 584 KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARV 643
           +PS  +W ALL GC++HG  +LG  AAE+LF+L P  +G +VLLSNM A+ GRW +A  V
Sbjct: 490 RPSISVWGALLGGCKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMLASAGRWAEATDV 549

Query: 644 RKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDT 703
           RK M++ G+KK+PG SWI   N VHVF   DT H   + +   L +L  +M+  GY+PDT
Sbjct: 550 RKEMKNVGIKKDPGRSWITWKNVVHVFQAKDTTHDMNREIQALLAKLKGQMQAAGYMPDT 609

Query: 704 KFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKV 763
           ++ L+D+E ++KE  +  HSEKLA+AFGL+ +P G  +R++KNLRIC DCH AFKF+S +
Sbjct: 610 QYALYDLEEEEKESEVFQHSEKLALAFGLICIPPGIPIRIMKNLRICVDCHRAFKFISGI 669

Query: 764 VGREIVVRDGKRFHHFRDGKCSCGDYW 790
            GREI+VRD   FHHF++ +CSC DYW
Sbjct: 670 AGREIIVRDNNMFHHFKNYECSCKDYW 696



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 113/470 (24%), Positives = 190/470 (40%), Gaps = 112/470 (23%)

Query: 37  VHAHMISSGFKPREHIIN-RLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASD 95
           +HA  +  G+ P +  ++   +D+Y K+  L  AR LFDE+P                  
Sbjct: 142 LHALALRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPN----------------- 184

Query: 96  NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV 155
                           R+ V +NA++T    +      +E +  +R     P+  +  + 
Sbjct: 185 ----------------RNVVAWNAVMTNAVLDGRPLETVEAYFGLRGAGGMPNVVSVCAF 228

Query: 156 LSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARR 215
            +A A +        Q +  V K G G   SV N+++  Y KC           +G AR 
Sbjct: 229 FNACAGMTNLSLG-EQFYGFVAKCGFGKDVSVSNSVVDFYGKC---------RCVGKARA 278

Query: 216 VFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLM 275
           VFD M  R+ +SW +M+  Y +N     A E      E   V   A  +G          
Sbjct: 279 VFDGMGVRNNVSWCSMVVAYAQN----GAEE------EAFFVYLGARRAGE--------- 319

Query: 276 LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG 335
              +  +F  +SV++ CA      LG+ +HA  +R+      + ++ V +ALV +Y KCG
Sbjct: 320 ---EPTDFMVSSVLTTCAGLLGLDLGRALHAVAVRS----CIDSNIFVASALVDMYGKCG 372

Query: 336 KVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM-----RERNLLSWTVMI 390
            + +A  +F +MP+R+LV+WNA++  Y   G    A S+F+ M        N ++   ++
Sbjct: 373 GIEDAEQVFFEMPQRNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLVNVL 432

Query: 391 SGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           +  ++ G  +EG +LF  M+   G +P                     R  H   V    
Sbjct: 433 TACSRGGLTKEGYELFQTMKWRFGIEP---------------------RIEHYACV---- 467

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHG 498
                     + +  R G+ E A  +   MP   S+S W A++     HG
Sbjct: 468 ----------VDLLCRAGMEERAYKIIQGMPMRPSISVWGALLGGCKMHG 507



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 6/165 (3%)

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI-TSCAGLGALENGRQL 440
            ++S+T  ISG AQ+    + L  F+ M   G +P D+ F  A   + +       G QL
Sbjct: 83  TVVSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRSAAGTQL 142

Query: 441 HAQLVHSGY---DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           HA  +  GY   D+ +S   A + MY + G +  A  +F+ MPN + V+WNA++      
Sbjct: 143 HALALRFGYLPDDAFVSC--AALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTNAVLD 200

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
           G     +E Y  +   G +P+ ++     +AC     +  G +++
Sbjct: 201 GRPLETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTNLSLGEQFY 245



 Score = 43.1 bits (100), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 4/139 (2%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R++HA  + S       + + L+D+Y K   +  A  +F E+PQ ++V    +I  Y+
Sbjct: 341 LGRALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQRNLVTWNAMIGGYA 400

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNG---HAAIELFRDMR-RDDVKPD 148
              +   A  +F+K  +       Y  ++   +  S G       ELF+ M+ R  ++P 
Sbjct: 401 HIGDAHNALSVFDKMIMGQETAPNYITLVNVLTACSRGGLTKEGYELFQTMKWRFGIEPR 460

Query: 149 NFTFTSVLSALALIVEEEK 167
              +  V+  L     EE+
Sbjct: 461 IEHYACVVDLLCRAGMEER 479


>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
          Length = 563

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/589 (37%), Positives = 333/589 (56%), Gaps = 45/589 (7%)

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
           +A  V+  M +++ +S   ++ GYV+   L  AR+  D M +     WNA+I+G +  E 
Sbjct: 10  SAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEF 69

Query: 272 ---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
                    +M  L    DE+T  SV S  A      +G+Q+H Y +    K   E  L 
Sbjct: 70  NEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTI----KYGLELDLV 125

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
           VN++L  +Y + GK+ +   +                                 +M  RN
Sbjct: 126 VNSSLAHMYMRNGKLQDGEIVI-------------------------------RSMPVRN 154

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
           L++W  +I G AQNG  E  L L+  M++ G +P    F   ++SC+ L     G+Q+HA
Sbjct: 155 LVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHA 214

Query: 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
           + +  G  S ++  ++LI+MY++CG +  A   F+   + D V W++MI+A G HG G  
Sbjct: 215 EAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDE 274

Query: 503 AIELYEQMLKEGILP-DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF 561
           AIEL+  M ++  +  + + FL +L AC+H+GL  +G   F+ M   YG  PG  HY   
Sbjct: 275 AIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCV 334

Query: 562 IDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621
           +DLL RAG   +A+ +I S+P K    IW+ LL+ C IH N ++  +  +++ Q+ P+ +
Sbjct: 335 VDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDS 394

Query: 622 GTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQ 681
             YVLL+N++A+  RW D + VRK MRD+ VKKE G SW E   +VH F + D +  +++
Sbjct: 395 ACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSK 454

Query: 682 AVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATV 741
            +Y YL++L LEM+  GY PDT  VLHDM+ ++KE  L  HSEKLAVAF LM LP GA +
Sbjct: 455 EIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPI 514

Query: 742 RVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           R++KNLR+C DCH AFK++S +  REI +RDG RFHHF +GKCSCGDYW
Sbjct: 515 RIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 563



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 147/304 (48%), Gaps = 4/304 (1%)

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           +Y K G    A  ++ +M +++ +S N +++ YV AG +  A+ +F+ M +R L +W  M
Sbjct: 1   MYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAM 60

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           I+GL Q  + EEGL LF +M   GF P +Y      +  AGL ++  G+Q+H   +  G 
Sbjct: 61  IAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGL 120

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
           +  L   ++L  MY R G ++    V  +MP  + V+WN +I    Q+G     + LY+ 
Sbjct: 121 ELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKM 180

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRR-YFETMHGPYGIPPGEDHYARFIDLLCRA 568
           M   G  P++ITF+TVLS+C+   +  +G++ + E +    G        +  I +  + 
Sbjct: 181 MKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAI--KIGASSVVAVVSSLISMYSKC 238

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628
           G   +A         +    +W ++++    HG  D  I+    + +           L+
Sbjct: 239 GCLGDAAKAFSEREDEDEV-MWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLN 297

Query: 629 NMYA 632
            +YA
Sbjct: 298 LLYA 301



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 104/461 (22%), Positives = 198/461 (42%), Gaps = 80/461 (17%)

Query: 59  IYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYN 118
           +Y K      A  ++  + + + ++   LI  Y  + ++  AR++F++ P   R    +N
Sbjct: 1   MYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMP--DRKLTTWN 58

Query: 119 AMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVK 178
           AMI            + LFR+M      PD +T  SV S  A +        Q+H   +K
Sbjct: 59  AMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGL-RSVSIGQQIHGYTIK 117

Query: 179 SGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKN 238
            G  L   V ++L  +Y++            +     V   MP R+ ++W T++ G  +N
Sbjct: 118 YGLELDLVVNSSLAHMYMR---------NGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQN 168

Query: 239 DYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLF 298
                      G  E V          Y+++ +K+   R   ++ T+ +V+S+C++  + 
Sbjct: 169 -----------GCPETV---------LYLYKMMKISGCRP--NKITFVTVLSSCSDLAIR 206

Query: 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAI 358
             G+Q+HA  +    K      + V ++L+++Y KCG + +A   F++  + D V W+++
Sbjct: 207 GQGQQIHAEAI----KIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSM 262

Query: 359 LSAYVSAGLIDEAKSLFEAMRER-----NLLSWTVMISGLAQNGYGEEGLKLFSQMRLE- 412
           +SAY   G  DEA  LF  M E+     N +++  ++   + +G  ++GL+LF  M  + 
Sbjct: 263 ISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKY 322

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
           GFKP                                    L     ++ +  R G ++ A
Sbjct: 323 GFKP-----------------------------------GLKHYTCVVDLLGRAGCLDQA 347

Query: 473 NCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
             +  +MP   D V W  +++A   H N   A  +++++L+
Sbjct: 348 EAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQ 388


>gi|15237442|ref|NP_199458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170604|sp|Q9FHF9.1|PP419_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46460, mitochondrial; Flags: Precursor
 gi|10177583|dbj|BAB10814.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008005|gb|AED95388.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 250/764 (32%), Positives = 390/764 (51%), Gaps = 112/764 (14%)

Query: 42  ISSGFKPRE-----HIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           ++  F+ RE     H+++R ID          AR +F+++P P +   T +I  Y+ S+ 
Sbjct: 31  VTVEFQNREVLICNHLLSRRID---------EAREVFNQVPSPHVSLYTKMITGYTRSNR 81

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
           +  A  +F++ P+  RD V +N+MI+      + + A++LF +M      P+     SV+
Sbjct: 82  LVDALNLFDEMPV--RDVVSWNSMISGCVECGDMNTAVKLFDEM------PER----SVV 129

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
           S  A++                   G F S                       +  A R+
Sbjct: 130 SWTAMV------------------NGCFRS---------------------GKVDQAERL 150

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL----- 271
           F +MP +D  +W +M+ GY++   +D A +    M     ++W  +I G    E      
Sbjct: 151 FYQMPVKDTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEAL 210

Query: 272 ----KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327
                ML   I+     +T VI+ACAN+  F +G QVH  ++    K    +   V+ +L
Sbjct: 211 DLFKNMLRCCIKSTSRPFTCVITACANAPAFHMGIQVHGLII----KLGFLYEEYVSASL 266

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWT 387
           +T Y  C ++ ++R +F+                              E + E+ +  WT
Sbjct: 267 ITFYANCKRIGDSRKVFD------------------------------EKVHEQ-VAVWT 295

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447
            ++SG + N   E+ L +FS M      P    FA  + SC+ LG L+ G+++H   V  
Sbjct: 296 ALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEMHGVAVKL 355

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
           G ++    GN+L+ MY+  G V  A  VF  +     VSWN++I    QHG G  A  ++
Sbjct: 356 GLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGKWAFVIF 415

Query: 508 EQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH-GPYGIPPGEDHYARFIDLLC 566
            QM++    PD ITF  +LSAC+H G +++GR+ F  M  G   I     HY   +D+L 
Sbjct: 416 GQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQHYTCMVDILG 475

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626
           R GK  EA+++I+ +  KP+  +W ALL+ CR+H ++D G +AA  +F L    +  YVL
Sbjct: 476 RCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDSKSSAAYVL 535

Query: 627 LSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKY 686
           LSN+YA+ GRW + +++R  M+  G+ K+PG SW+ +  K H F   D   P    +Y+ 
Sbjct: 536 LSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEFFSGD--QPHCSRIYEK 593

Query: 687 LEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKN 746
           LE L  ++++LGY PD +  LHD+E +QKE  L  HSE+LA+AFGL+    G+ V V+KN
Sbjct: 594 LEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSAVTVMKN 653

Query: 747 LRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           LR+C DCH   K +S VVGREIV+RD  RFHHF++G CSCGDYW
Sbjct: 654 LRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKNGTCSCGDYW 697



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 135/326 (41%), Gaps = 68/326 (20%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           VH  +I  GF   E++   LI  Y    ++  +R +FDE     +   T           
Sbjct: 247 VHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVAVWT----------- 295

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
                                 A+++ YS N     A+ +F  M R+ + P+  TF S L
Sbjct: 296 ----------------------ALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGL 333

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
           ++ + +   +    +MH   VK G      V N+L+ +Y         S    +  A  V
Sbjct: 334 NSCSALGTLDWG-KEMHGVAVKLGLETDAFVGNSLVVMY---------SDSGNVNDAVSV 383

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLML 276
           F ++ ++  +SW +++ G  ++           G  +     W  +I G      +M+ L
Sbjct: 384 FIKIFKKSIVSWNSIIVGCAQH-----------GRGK-----WAFVIFG------QMIRL 421

Query: 277 RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
             + DE T+T ++SAC++ G    G+++  Y+  +      +  +     +V +  +CGK
Sbjct: 422 NKEPDEITFTGLLSACSHCGFLEKGRKLFYYM--SSGINHIDRKIQHYTCMVDILGRCGK 479

Query: 337 VNEARDIFNQMPER-DLVSWNAILSA 361
           + EA ++  +M  + + + W A+LSA
Sbjct: 480 LKEAEELIERMVVKPNEMVWLALLSA 505


>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
 gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 565

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/589 (37%), Positives = 333/589 (56%), Gaps = 45/589 (7%)

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
           +A  V+  M +++ +S   ++ GYV+   L  AR+  D M +     WNA+I+G +  E 
Sbjct: 12  SAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEF 71

Query: 272 ---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
                    +M  L    DE+T  SV S  A      +G+Q+H Y +    K   E  L 
Sbjct: 72  NEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTI----KYGLELDLV 127

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
           VN++L  +Y + GK+ +   +                                 +M  RN
Sbjct: 128 VNSSLAHMYMRNGKLQDGEIVI-------------------------------RSMPVRN 156

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
           L++W  +I G AQNG  E  L L+  M++ G +P    F   ++SC+ L     G+Q+HA
Sbjct: 157 LVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHA 216

Query: 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
           + +  G  S ++  ++LI+MY++CG +  A   F+   + D V W++MI+A G HG G  
Sbjct: 217 EAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDE 276

Query: 503 AIELYEQMLKEGILP-DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF 561
           AIEL+  M ++  +  + + FL +L AC+H+GL  +G   F+ M   YG  PG  HY   
Sbjct: 277 AIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCV 336

Query: 562 IDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621
           +DLL RAG   +A+ +I S+P K    IW+ LL+ C IH N ++  +  +++ Q+ P+ +
Sbjct: 337 VDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDS 396

Query: 622 GTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQ 681
             YVLL+N++A+  RW D + VRK MRD+ VKKE G SW E   +VH F + D +  +++
Sbjct: 397 ACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSK 456

Query: 682 AVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATV 741
            +Y YL++L LEM+  GY PDT  VLHDM+ ++KE  L  HSEKLAVAF LM LP GA +
Sbjct: 457 EIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPI 516

Query: 742 RVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           R++KNLR+C DCH AFK++S +  REI +RDG RFHHF +GKCSCGDYW
Sbjct: 517 RIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 565



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 149/306 (48%), Gaps = 4/306 (1%)

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWT 387
           +++Y K G    A  ++ +M +++ +S N +++ YV AG +  A+ +F+ M +R L +W 
Sbjct: 1   MSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWN 60

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447
            MI+GL Q  + EEGL LF +M   GF P +Y      +  AGL ++  G+Q+H   +  
Sbjct: 61  AMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKY 120

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
           G +  L   ++L  MY R G ++    V  +MP  + V+WN +I    Q+G     + LY
Sbjct: 121 GLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLY 180

Query: 508 EQMLKEGILPDRITFLTVLSACNHAGLVKEGRR-YFETMHGPYGIPPGEDHYARFIDLLC 566
           + M   G  P++ITF+TVLS+C+   +  +G++ + E +    G        +  I +  
Sbjct: 181 KMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAI--KIGASSVVAVVSSLISMYS 238

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626
           + G   +A         +    +W ++++    HG  D  I+    + +           
Sbjct: 239 KCGCLGDAAKAFSEREDEDEV-MWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAF 297

Query: 627 LSNMYA 632
           L+ +YA
Sbjct: 298 LNLLYA 303



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 104/463 (22%), Positives = 199/463 (42%), Gaps = 80/463 (17%)

Query: 57  IDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVF 116
           + +Y K      A  ++  + + + ++   LI  Y  + ++  AR++F++ P   R    
Sbjct: 1   MSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMP--DRKLTT 58

Query: 117 YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTV 176
           +NAMI            + LFR+M      PD +T  SV S  A +        Q+H   
Sbjct: 59  WNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGL-RSVSIGQQIHGYT 117

Query: 177 VKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV 236
           +K G  L   V ++L  +Y++            +     V   MP R+ ++W T++ G  
Sbjct: 118 IKYGLELDLVVNSSLAHMYMR---------NGKLQDGEIVIRSMPVRNLVAWNTLIMGNA 168

Query: 237 KNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSG 296
           +N           G  E V          Y+++ +K+   R   ++ T+ +V+S+C++  
Sbjct: 169 QN-----------GCPETV---------LYLYKMMKISGCRP--NKITFVTVLSSCSDLA 206

Query: 297 LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWN 356
           +   G+Q+HA  +    K      + V ++L+++Y KCG + +A   F++  + D V W+
Sbjct: 207 IRGQGQQIHAEAI----KIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWS 262

Query: 357 AILSAYVSAGLIDEAKSLFEAMRER-----NLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
           +++SAY   G  DEA  LF  M E+     N +++  ++   + +G  ++GL+LF  M  
Sbjct: 263 SMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVE 322

Query: 412 E-GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
           + GFKP                                    L     ++ +  R G ++
Sbjct: 323 KYGFKP-----------------------------------GLKHYTCVVDLLGRAGCLD 347

Query: 471 AANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
            A  +  +MP   D V W  +++A   H N   A  +++++L+
Sbjct: 348 QAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQ 390


>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
 gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
 gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 573

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/551 (40%), Positives = 327/551 (59%), Gaps = 23/551 (4%)

Query: 259 WNALISGYVHR------------ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
           WN +I   VH              L+M   R+  D  T+  ++ +  N     LG++ HA
Sbjct: 27  WNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHA 86

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366
            +L       P     V  +L+ +Y  CG +  A+ +F+    +DL +WN++++AY  AG
Sbjct: 87  QILLFGLDKDPF----VRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAG 142

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL----EGF-KPCDYAF 421
           LID+A+ LF+ M ERN++SW+ +I+G    G  +E L LF +M+L    E F +P ++  
Sbjct: 143 LIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTM 202

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
           +  +++C  LGALE G+ +HA +     +  +  G ALI MYA+CG +E A  VFN + +
Sbjct: 203 STVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGS 262

Query: 482 VDSV-SWNAMIAALGQHGNGARAIELYEQML-KEGILPDRITFLTVLSACNHAGLVKEGR 539
              V +++AMI  L  +G      +L+ +M   + I P+ +TF+ +L AC H GL+ EG+
Sbjct: 263 KKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGK 322

Query: 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI 599
            YF+ M   +GI P   HY   +DL  R+G   EA+  I S+P +P   IW +LL+G R+
Sbjct: 323 SYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRM 382

Query: 600 HGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCS 659
            G+I     A ++L +L P ++G YVLLSN+YA  GRW +   +R  M  +G+ K PGCS
Sbjct: 383 LGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCS 442

Query: 660 WIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYAL 719
           ++EV+  VH F+V D +  E++ +Y  L++++  +R+ GYV DTK VL D+    KE AL
Sbjct: 443 YVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIAL 502

Query: 720 STHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHF 779
           S HSEKLA+AF LMK   G  VR++KNLRICGDCH   K +SK+  REIVVRD  RFHHF
Sbjct: 503 SYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHF 562

Query: 780 RDGKCSCGDYW 790
           RDG CSC D+W
Sbjct: 563 RDGSCSCRDFW 573



 Score =  129 bits (323), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 101/421 (23%), Positives = 184/421 (43%), Gaps = 73/421 (17%)

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNG---HAAIELFRDMRRDDVKPDNFTFT 153
           +  A  +F+   LK+ ++  +N +I A  HN +    H+ I ++  MR   V PD  TF 
Sbjct: 8   IAYANPIFHIRHLKL-ESFLWNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFP 66

Query: 154 SVLSA----LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
            +L +    L L + +     + H  ++  G      V  +L+++Y  C           
Sbjct: 67  FLLPSFHNPLHLPLGQ-----RTHAQILLFGLDKDPFVRTSLLNMYSSCGD--------- 112

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV-- 267
           + +A+RVFD+   +D  +W +++  Y K   +D AR+  D M E   ++W+ LI+GYV  
Sbjct: 113 LRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMC 172

Query: 268 --HRELKMLMLRIQL----------DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
             ++E   L   +QL          +EFT ++V+SAC   G    GK VHAY+ +     
Sbjct: 173 GKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHV-- 230

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQM-PERDLVSWNAILSAYVSAGLIDEAKSL 374
             E  + +  AL+ +Y KCG +  A+ +FN +  ++D+ +++A++      GL DE   L
Sbjct: 231 --EIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQL 288

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
           F  M                                 +   P    F G + +C   G +
Sbjct: 289 FSEMTTS------------------------------DNINPNSVTFVGILGACVHRGLI 318

Query: 435 ENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIA 492
             G+     ++   G   S+     ++ +Y R G+++ A     +MP   D + W ++++
Sbjct: 319 NEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLS 378

Query: 493 A 493
            
Sbjct: 379 G 379



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 166/383 (43%), Gaps = 45/383 (11%)

Query: 27  NPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTT 86
           NP+   L +  HA ++  G      +   L+++Y     L  A+ +FD+    D+ A  +
Sbjct: 74  NPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNS 133

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD-- 144
           ++ AY+ +  +  AR++F++ P   R+ + ++ +I  Y        A++LFR+M+     
Sbjct: 134 VVNAYAKAGLIDDARKLFDEMP--ERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPN 191

Query: 145 ---VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSS 201
              V+P+ FT ++VLSA   +   E Q   +H  + K    +   +  ALI +Y KC S 
Sbjct: 192 EAFVRPNEFTMSTVLSACGRLGALE-QGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGS- 249

Query: 202 PFVSSRSLMGAARRVFDEM-PERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWN 260
                   +  A+RVF+ +  ++D  +++ M+         D   +    M+ +  +  N
Sbjct: 250 --------LERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPN 301

Query: 261 ALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
           ++                     T+  ++ AC + GL   GK     ++  E   TP  S
Sbjct: 302 SV---------------------TFVGILGACVHRGLINEGKSYFKMMIE-EFGITP--S 337

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
           +     +V LY + G + EA      MP E D++ W ++LS     G I   +   + + 
Sbjct: 338 IQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLI 397

Query: 380 ERNLLSWTVMISGLAQNGYGEEG 402
           E + ++    +  L  N Y + G
Sbjct: 398 ELDPMNSGAYV--LLSNVYAKTG 418


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/615 (35%), Positives = 347/615 (56%), Gaps = 50/615 (8%)

Query: 186 SVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245
           S+++ALI+    C S  +  +        RV   +          +++ YV+      A 
Sbjct: 39  SLVSALITAISTCSSISYCRALHC-----RVIKSVNYNHGFIGDQLVSSYVELGCTKDAL 93

Query: 246 EFLDGMSENVGVAWNALISGYVHR-ELKM---LMLRIQLD------EFTYTSVISACANS 295
           E  D + +   V+WN+LISG+  R +L +   L+ R++ +      E T   V+SACA  
Sbjct: 94  ELFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGV 153

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
           G   +GK +H        K      + V N+L+ LY KCG                    
Sbjct: 154 GELDVGKCIHG----IAVKSGMLLEVKVVNSLINLYGKCG-------------------- 189

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
                       ++ A  LFE M  ++L+SW  M++     G  E+G+  F  MR  G  
Sbjct: 190 -----------CLEAACCLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGIN 238

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
                    + +C  LG  +    +H  +++ G D +L+   AL+ +YA+ G +  +  V
Sbjct: 239 SDQATVVSLLLACENLGVRKLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKV 298

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           F  M N D+V+W AM+++   HG G  AIE +E M++EG++PD +TF  +LSAC+H+GLV
Sbjct: 299 FGGMINPDAVAWTAMLSSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLV 358

Query: 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
           +EG+ YF+ M+  YG+    +HY+  +DLL R+G  ++A  +I S+P +P++ +W AL+ 
Sbjct: 359 EEGKNYFKIMYEFYGVELRVEHYSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGALIG 418

Query: 596 GCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKE 655
            CR+ GNI+LG + AE+LF L P  +  Y+ LSNMY+  G+W DA++VR LM++R + + 
Sbjct: 419 ACRVRGNIELGKEVAERLFSLDPSDSRNYITLSNMYSAAGQWRDASKVRALMKERVLIRN 478

Query: 656 PGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQK 715
           PGCS+IE  NK+H F++ D +HP+ + +Y  LE+LV + R++G+   T++VLHD++ + K
Sbjct: 479 PGCSYIEHGNKIHCFVMGDQSHPDTEQIYNKLEELVRKNREVGFASKTEYVLHDVDEEVK 538

Query: 716 EYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKR 775
           E  ++ HSEKLA+AFGL+    G  + + KN+RICGDCH   K +S +  R I++RD KR
Sbjct: 539 EDLINKHSEKLAIAFGLLVTNAGMPLIITKNIRICGDCHGFAKLISLIEKRTIIIRDTKR 598

Query: 776 FHHFRDGKCSCGDYW 790
           FHHF +G CSCGDYW
Sbjct: 599 FHHFTNGLCSCGDYW 613



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 124/512 (24%), Positives = 223/512 (43%), Gaps = 95/512 (18%)

Query: 12  LANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYART 71
           + +++ S ++L    N   S L+ + HA      F   + +++ LI        + Y R 
Sbjct: 9   ILHKFISSIRL---YNSFASQLSPTFHA------FSNVDSLVSALITAISTCSSISYCRA 59

Query: 72  L----FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHN 127
           L       +          L+++Y      K A E+F++ P K  D V +N++I+ +S  
Sbjct: 60  LHCRVIKSVNYNHGFIGDQLVSSYVELGCTKDALELFDELPDK--DLVSWNSLISGFSRR 117

Query: 128 SNGHAAIELFRDMRRD-DVKPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKSGTGLFT 185
           ++    + L   MR +  +KP+  T   V+SA A + E +  +C+  H   VKSG  L  
Sbjct: 118 ADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVGELDVGKCI--HGIAVKSGMLLEV 175

Query: 186 SVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245
            V+N+LI++Y KC           + AA  +F+ M  +  +SW +M+  +V         
Sbjct: 176 KVVNSLINLYGKC---------GCLEAACCLFEGMSVQSLVSWNSMVAVHV--------- 217

Query: 246 EFLDGMSENVGVAWNALISGYVHRELKMLMLR---IQLDEFTYTSVISACANSGLFRLGK 302
                   ++G+A   +  GY       +M+R   I  D+ T  S++ AC N G+ +L +
Sbjct: 218 --------HMGLAEKGI--GY------FIMMRRAGINSDQATVVSLLLACENLGVRKLAE 261

Query: 303 QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY 362
            VH Y+L        + +L +  AL+ LY K G ++++  +F  M   D V+W A+LS+Y
Sbjct: 262 AVHGYIL----NGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSY 317

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
                                          A +G G E ++ F  M  EG  P    F 
Sbjct: 318 -------------------------------AMHGRGREAIEHFELMVREGVVPDHVTFT 346

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG--NALITMYARCGVVEAANCVFNTMP 480
             +++C+  G +E G+  + ++++  Y   L     + ++ +  R G +  A  +  +MP
Sbjct: 347 HLLSACSHSGLVEEGKN-YFKIMYEFYGVELRVEHYSCMVDLLGRSGHLNDAYKLIKSMP 405

Query: 481 -NVDSVSWNAMIAALGQHGNGARAIELYEQML 511
              +S  W A+I A    GN     E+ E++ 
Sbjct: 406 MEPNSGVWGALIGACRVRGNIELGKEVAERLF 437


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 240/670 (35%), Positives = 369/670 (55%), Gaps = 87/670 (12%)

Query: 131 HAAIELFRDMRRDDV-KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLN 189
           H A+ELF  +  +     D+ T+ +++SA  + ++  +   ++   ++ SG      + N
Sbjct: 112 HEALELFEILELNGAYDMDSETYDALVSA-CIGLKSIRGVKKVFNYMINSGLDPDEYLRN 170

Query: 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD 249
            ++ ++VKC          +M  ARR+FDEMPE++ LS                      
Sbjct: 171 RVLLMHVKC---------GMMIDARRLFDEMPEKNILS---------------------- 199

Query: 250 GMSENVGVAWNALISGYV----HRELKMLMLRIQLD-----EFTYTSVISACANSGLFRL 300
                    WN +I G V    + E   L L +  D        + ++I A A  GL   
Sbjct: 200 ---------WNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLGLIFA 250

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           G+Q+H+  L+T         + V  AL+ +Y KCG + +A+ +F+QMPE+  V WN+I++
Sbjct: 251 GRQLHSCSLKTGVGG----DVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIA 306

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
            Y   G                               Y EE L ++ +MR  G K  ++ 
Sbjct: 307 GYALHG-------------------------------YSEEALSMYYEMRDSGVKIDNFT 335

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
           F+  I  CA L +LE+ +Q HA LV  G+   + A  AL+ +Y++ G +E A  VF+ MP
Sbjct: 336 FSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMP 395

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
           + + +SWNA+IA  G HG G  A+E++E+ML EG++P+ +TFL VLSAC+++GL   G  
Sbjct: 396 HKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWE 455

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
            FE+M   + I P   HYA  I+LL R G   EA  +I   PFKP+  +W ALL  CR+H
Sbjct: 456 IFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVH 515

Query: 601 GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSW 660
            N +LG  AAE+L+ + P     YV+L N+Y   GR ++AA V + ++ RG++  P CSW
Sbjct: 516 KNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNRSGRLEEAAAVIQTLKRRGLRMLPACSW 575

Query: 661 IEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALS 720
           IE+  + + F+  D  H +++ +Y+ L++L+LE+ K GYVP  KF+L D++ +Q+E  L 
Sbjct: 576 IEIKKQPYGFISGDKCHAQSKEIYQKLDELMLEISKHGYVPQDKFLLPDVD-EQEERVLL 634

Query: 721 THSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFR 780
            HSEKLA+AFGL+       ++++++ RICGDCH+A K ++ V  REIVVRD  RFHHF+
Sbjct: 635 YHSEKLAIAFGLINTSDWTPLQIVQSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFK 694

Query: 781 DGKCSCGDYW 790
           DG CSCGDYW
Sbjct: 695 DGSCSCGDYW 704



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 121/519 (23%), Positives = 221/519 (42%), Gaps = 115/519 (22%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           + V  +MI+SG  P E++ NR++ ++ K   ++ AR LFDE+P+ +I++           
Sbjct: 151 KKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILS----------- 199

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
                                 +N +I       +   A  LF  M +D     +  F +
Sbjct: 200 ----------------------WNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVT 237

Query: 155 VLSA---LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           ++ A   L LI        Q+H   +K+G G    V  ALI +Y KC S         + 
Sbjct: 238 MIRASAGLGLIFAGR----QLHSCSLKTGVGGDVFVACALIDMYSKCGS---------IE 284

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A+ VFD+MPE+  + W +++ GY  + Y + A      M +          SG      
Sbjct: 285 DAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRD----------SG------ 328

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV--NNALVT 329
                 +++D FT++ +I  CA        KQ HA L+R        F L +  N ALV 
Sbjct: 329 ------VKIDNFTFSIIIRICARLASLEHAKQAHAGLVRH------GFGLDIVANTALVD 376

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           LY K G++ +A+ +F+ MP ++++SWNA+++ Y                           
Sbjct: 377 LYSKWGRIEDAKHVFDMMPHKNVISWNALIAGY--------------------------- 409

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
                 +G G E +++F +M  EG  P    F   +++C+  G  + G ++   +     
Sbjct: 410 ----GNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHK 465

Query: 450 DSSLSAGNA-LITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGNGARAIELY 507
               +   A +I +  R G+++ A  +    P   +V+ W A++ A   H N        
Sbjct: 466 IKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAA 525

Query: 508 EQMLKEGILPDRIT-FLTVLSACNHAGLVKEGRRYFETM 545
           E++   G+ P++++ ++ +L+  N +G ++E     +T+
Sbjct: 526 EKLY--GMGPEKLSNYVVLLNIYNRSGRLEEAAAVIQTL 562



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 149/341 (43%), Gaps = 43/341 (12%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+     LI  YS   +++ A+ +F++ P K   TV +N++I  Y+ +     A+ ++ +
Sbjct: 266 DVFVACALIDMYSKCGSIEDAQCVFDQMPEKT--TVGWNSIIAGYALHGYSEEALSMYYE 323

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           MR   VK DNFTF+ ++   A +   E    Q H  +V+ G GL      AL+ +Y    
Sbjct: 324 MRDSGVKIDNFTFSIIIRICARLASLE-HAKQAHAGLVRHGFGLDIVANTALVDLY---- 378

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                S    +  A+ VFD MP ++ +SW  ++ GY  +     A E  +          
Sbjct: 379 -----SKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFE---------- 423

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT-EAKPTPE 318
                       +ML   +  +  T+ +V+SAC+ SGL   G ++   + R  + KP   
Sbjct: 424 ------------RMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAM 471

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSA---YVSAGLIDEAKSL 374
                   ++ L  + G ++EA  +    P +  V+ W A+L+A   + +  L   A   
Sbjct: 472 HY----ACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEK 527

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
              M    L ++ V+++   ++G  EE   +   ++  G +
Sbjct: 528 LYGMGPEKLSNYVVLLNIYNRSGRLEEAAAVIQTLKRRGLR 568



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 6/132 (4%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQP----DIVARTT 86
           S  A S++  M  SG K      + +I I  +   L +A+     + +     DIVA T 
Sbjct: 314 SEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTA 373

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           L+  YS    ++ A+ +F+  P K  + + +NA+I  Y ++  G  A+E+F  M  + + 
Sbjct: 374 LVDLYSKWGRIEDAKHVFDMMPHK--NVISWNALIAGYGNHGRGVEAVEMFERMLHEGMV 431

Query: 147 PDNFTFTSVLSA 158
           P++ TF +VLSA
Sbjct: 432 PNHVTFLAVLSA 443


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/510 (39%), Positives = 309/510 (60%), Gaps = 8/510 (1%)

Query: 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
           D F  T+++ A A +G         A L R      P   + + N ++  Y   G+V EA
Sbjct: 74  DLFVRTALVEAYAKAG--------RADLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAEA 125

Query: 341 RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGE 400
           R +F+ M ERD+VSWN ++  Y   G +D A+ +F  M +R+  SW+ M+S   +    +
Sbjct: 126 RRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSK 185

Query: 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALI 460
           + L+L+ +MR     P        +++C+ +GAL  G ++H  +  +G +  +  G ALI
Sbjct: 186 DALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALI 245

Query: 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI 520
            MYA+CG +E +  VF++MP  D ++W++MI  L  HG G  A+ L+ +ML EG+ P+ +
Sbjct: 246 DMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEV 305

Query: 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580
           TF+ VL +C H GLV +G++YF +M   +G+ P   HY   +DLL R+G   EAK +I  
Sbjct: 306 TFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRD 365

Query: 581 LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA 640
           +PF+P A IW ALL  CRI+ N+++  +A  +L  L PH  G YVLLSN+YA    W+  
Sbjct: 366 MPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPHADGHYVLLSNIYAQANSWEGV 425

Query: 641 ARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYV 700
           A +R+ +R   +++ PG S IE  N +H F+  D +HP ++ +YK L +++  +R+ GY 
Sbjct: 426 AEMRRTLRRERIQRIPGRSSIEWQNTIHEFISGDRSHPRSKEIYKMLGEMMDRLRQAGYK 485

Query: 701 PDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFM 760
           P T  VL D++   KE AL+ HSEKLAVAFGL+  P G+T+R+ KNLR C DCH+A K +
Sbjct: 486 PMTGLVLQDIDEQSKERALAEHSEKLAVAFGLLTTPAGSTLRITKNLRACEDCHSAIKLI 545

Query: 761 SKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           + +  R++++RD  RFHHF +G+CSC DYW
Sbjct: 546 ALLYERKLIIRDRNRFHHFSEGRCSCKDYW 575



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 159/336 (47%), Gaps = 63/336 (18%)

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           N +++ YV         +R  +  ARRVFD M ERD +SW TM+ GY  N  +D ARE  
Sbjct: 110 NVMLAAYV---------TRGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVF 160

Query: 249 DGMSENVGVAWNALISGYVH-----------RELKMLMLRIQLDEFTYTSVISACANSGL 297
           +GM +    +W++++S Y             RE++     +  D  T  SV+SAC++ G 
Sbjct: 161 NGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAAC--VNPDCTTMVSVLSACSDMGA 218

Query: 298 FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA 357
             +G +VH ++         E  + +  AL+ +Y KCG +  +  +F+ MP +D+++W++
Sbjct: 219 LAVGAEVHQFV----ESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSS 274

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
                                          MI GLA +G+G + L LFS+M  EG +P 
Sbjct: 275 -------------------------------MIIGLANHGFGHDALSLFSRMLSEGLQPN 303

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQL-VHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
           +  F G + SC  LG + +G++  + + V  G    +     ++ +  R G +E A  + 
Sbjct: 304 EVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLI 363

Query: 477 NTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQML 511
             MP   D+V W A++ A   + N    +E+ E+ +
Sbjct: 364 RDMPFEPDAVIWRALLGACRIYKN----VEVAEEAM 395



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 157/345 (45%), Gaps = 50/345 (14%)

Query: 26  RNPITSSLARSVHAHMISSGFK--PREHII--NRLIDIYCKSLKLVYARTLFDEIPQPDI 81
           R  +  + A++  A +  + F   PR  +   N ++  Y    ++  AR +FD + + D+
Sbjct: 78  RTALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAEARRVFDGMRERDM 137

Query: 82  VARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMR 141
           V+  T+I  Y+ +  V LARE+FN   +  RD   +++M++AY+       A+EL+R+MR
Sbjct: 138 VSWNTMIHGYAVNGEVDLAREVFNG--MDDRDAFSWSSMMSAYTKGRRSKDALELWREMR 195

Query: 142 RDDVKPDNFTFTSVLSAL----ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
              V PD  T  SVLSA     AL V  E     +H  V  +G  L   +  ALI +Y K
Sbjct: 196 AACVNPDCTTMVSVLSACSDMGALAVGAE-----VHQFVESNGVELDVKLGTALIDMYAK 250

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C           +  + RVF  MP +D L+W++M+ G   + +   A             
Sbjct: 251 CGD---------IENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFS-------- 293

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                         +ML   +Q +E T+  V+ +C + GL   GK+  + +       TP
Sbjct: 294 --------------RMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHG-VTP 338

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
           +  +     +V L  + G + EA+ +   MP E D V W A+L A
Sbjct: 339 K--VQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGA 381



 Score = 45.4 bits (106), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 84/235 (35%), Gaps = 69/235 (29%)

Query: 430 GLGALENGRQLHAQLVHSGYDSS-LSAGNALITMYARCGVVEAANCVFNTMP-------N 481
           GLGA      LHA+ + SG+ ++ L    AL+  YA+ G  + A   F+  P       N
Sbjct: 55  GLGAA----SLHARALKSGFAAADLFVRTALVEAYAKAGRADLARAAFDEAPRRDVFLCN 110

Query: 482 V------------------------DSVSWNAMIAALGQHG------------------- 498
           V                        D VSWN MI     +G                   
Sbjct: 111 VMLAAYVTRGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFS 170

Query: 499 ---------NGAR---AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546
                     G R   A+EL+ +M    + PD  T ++VLSAC+  G +  G    + + 
Sbjct: 171 WSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVE 230

Query: 547 GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
              G+          ID+  + G    +  V  S+P K     W +++ G   HG
Sbjct: 231 SN-GVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVK-DVLTWSSMIIGLANHG 283


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 245/780 (31%), Positives = 395/780 (50%), Gaps = 107/780 (13%)

Query: 14  NRYASQ--LQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYART 71
           N Y S   LQ+C     +  SL R +HA ++  G +         ++I C +L ++YA+ 
Sbjct: 266 NSYTSVAVLQVCAELGLL--SLGRELHAALLKCGSE---------LNIQCNALLVMYAK- 313

Query: 72  LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
                              Y   D+   A  +F +   K  D + +N+M++ Y  NS   
Sbjct: 314 -------------------YGRVDS---ALRVFGQIAEK--DYISWNSMLSCYVQNSFYA 349

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
            AI+ F +M +   +PD+    S+ SAL  +        + H   +K        V N L
Sbjct: 350 EAIDFFGEMLQHGFQPDHACVVSLSSALGHL-SRLNNGREFHAYAIKQRLHTDLQVGNTL 408

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           + +Y+KC S         +  + +VF+ M  RD +SWTT++  + ++     A E +   
Sbjct: 409 MDMYIKCGS---------IECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMI--- 456

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
                              L++    I +D     S++  C       L KQVH Y +R 
Sbjct: 457 -------------------LELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRN 497

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
                    L + N L+ +Y +CG+                                D +
Sbjct: 498 GL-----LDLILENRLIDIYGECGE-------------------------------FDHS 521

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
            +LF+ + +++++SWT MI+    NG     + LF++M+    +P   A    + + AGL
Sbjct: 522 LNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGL 581

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
            +L  G+Q+H  L+   +       ++L+ MY+ CG +  A  VF      D V W AMI
Sbjct: 582 SSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMI 641

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
            A G HG+G +AI+L+++ML+ G+ PD ++FL +L AC+H+ LV+EG+ Y + M   Y +
Sbjct: 642 NATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRL 701

Query: 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611
            P ++HYA  +D+L R+G+  EA + I ++P  P + +W ALL  CR+H N  L + AA 
Sbjct: 702 KPWQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKSAVWCALLGACRVHRNYGLAVVAAN 761

Query: 612 QLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFL 671
           +L +L P + G Y+L+SN++A +G+W++A   R  M +RG++K P CSWIE+ N +H F 
Sbjct: 762 KLLELEPDNPGNYILVSNVFAEMGKWNNAKETRTRMAERGLRKNPACSWIEIGNNIHTFT 821

Query: 672 VDDTAHPEAQAVYKYLEQLVLEMRKL-GYVPDTKFVLHDMESDQKEYALSTHSEKLAVAF 730
             D  H +++A++  L ++   +R+  GYV DT+FVLHD   ++K   L  HSE++A+AF
Sbjct: 822 SGDYCHRDSEAIHLKLSEITEMLRREGGYVEDTRFVLHDTSEEEKIDMLHKHSERIAIAF 881

Query: 731 GLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           GL+    G  +R+ KNLR+CGDCH   K +SK+  R+IVVRD  RFHHF  G CSC D+W
Sbjct: 882 GLISTRPGMPIRIAKNLRVCGDCHEFTKLVSKLFERDIVVRDANRFHHFSGGSCSCEDFW 941



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 149/531 (28%), Positives = 241/531 (45%), Gaps = 90/531 (16%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVF-YNAMITAYSHNSNGHAAIELFRDMRRD 143
           T L+  Y     V  AR +FN  P +   TVF +NA++ AY  + +   A+ ++  MR  
Sbjct: 99  TKLVFMYGRCGRVDDARRLFNGMPAR---TVFSWNALVGAYLSSGSAGEAMRVYGAMRAS 155

Query: 144 DV---KPDNFTFTSVLSALALIVEEEKQCM-QMHCTVVKSGTGLFTSVLNALISVYVKCV 199
                 PD  T  SVL A     E + +C  ++H   VK G    T V NALI +Y KC 
Sbjct: 156 AAPGSAPDGCTLASVLKACG--AEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKC- 212

Query: 200 SSPFVSSRSLMGAARRVFDEMPE--RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
                    L+ +A RVF+ + +  RD  SW ++++G V+N     A     GM ++ G 
Sbjct: 213 --------GLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGM-QSAGF 263

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
             N+                     +T  +V+  CA  GL  LG+++HA LL+  ++   
Sbjct: 264 PMNS---------------------YTSVAVLQVCAELGLLSLGRELHAALLKCGSELNI 302

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
           +      NAL+ +Y K G+V+ A  +F Q+ E+D +SWN++LS YV              
Sbjct: 303 QC-----NALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYV-------------- 343

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG-LGALEN 436
                            QN +  E +  F +M   GF+P D+A   +++S  G L  L N
Sbjct: 344 -----------------QNSFYAEAIDFFGEMLQHGFQP-DHACVVSLSSALGHLSRLNN 385

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           GR+ HA  +     + L  GN L+ MY +CG +E +  VF +M   D +SW  ++A   Q
Sbjct: 386 GREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQ 445

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
               + A+E+  ++ KEGI+ D +   ++L  C   GL  +     + +H  Y I  G  
Sbjct: 446 SSRHSEALEMILELQKEGIMVDSMMIGSILETC--CGL--KSISLLKQVH-CYAIRNGLL 500

Query: 557 HYA---RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
                 R ID+    G+F  + ++   +  K     W +++  C  +G ++
Sbjct: 501 DLILENRLIDIYGECGEFDHSLNLFQRVE-KKDIVSWTSMINCCTNNGRLN 550



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 128/505 (25%), Positives = 212/505 (41%), Gaps = 82/505 (16%)

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           G+QVHA+ + T +    +    +   LV +Y +CG+V++AR +FN MP R + SWNA++ 
Sbjct: 76  GRQVHAHAVTTGSLNEDDDGF-LATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVG 134

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
           AY+S+G   EA  ++ AMR              A  G   +G  L               
Sbjct: 135 AYLSSGSAGEAMRVYGAMRAS------------AAPGSAPDGCTL--------------- 167

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
            A  + +C   G    G ++H   V  G D S    NALI MYA+CG++++A  VF  + 
Sbjct: 168 -ASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQ 226

Query: 481 N--VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG 538
               D  SWN++++   Q+G    A+ L+  M   G   +  T + VL  C   GL+  G
Sbjct: 227 QDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLG 286

Query: 539 RRYFETMHGPYGIPPGEDHYARFIDLL---CRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
           R     +     +  G +   +   LL    + G+   A  V   +  K     W ++L+
Sbjct: 287 RELHAAL-----LKCGSELNIQCNALLVMYAKYGRVDSALRVFGQIAEKDYIS-WNSMLS 340

Query: 596 GCRIHGN-----IDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA------ARVR 644
            C +  +     ID   +  +  FQ  P HA   V LS+   +L R ++       A  +
Sbjct: 341 -CYVQNSFYAEAIDFFGEMLQHGFQ--PDHA-CVVSLSSALGHLSRLNNGREFHAYAIKQ 396

Query: 645 KLMRDRGVKKE-----PGCSWIEVDNKV--------HVFLVDDTAHPEAQAVYKYLEQLV 691
           +L  D  V          C  IE   KV        H+      A     + +    +++
Sbjct: 397 RLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMI 456

Query: 692 LEMRKLGYVPDTKFVLHDMES--DQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRI 749
           LE++K G + D+  +   +E+    K  +L       A+  GL+ L       +L+N  I
Sbjct: 457 LELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGLLDL-------ILENRLI 509

Query: 750 -----CGDCHNAFKFMSKVVGREIV 769
                CG+  ++     +V  ++IV
Sbjct: 510 DIYGECGEFDHSLNLFQRVEKKDIV 534


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/644 (35%), Positives = 346/644 (53%), Gaps = 65/644 (10%)

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           P+N   T  +S L      + +  Q+H   ++ G  L    +   +   +  +S+P    
Sbjct: 13  PEN-PLTKCISLLQFCASSKHKLKQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSAP---- 67

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              M  A  VF  +   +  +W T++ GY ++D    A  F                   
Sbjct: 68  ---MSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYR----------------- 107

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                +M++  ++ D  TY  ++ A + S   R G+ +H+  +R              N 
Sbjct: 108 -----QMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTIR--------------NG 148

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
             +L            +F Q         N++L  Y + G  + A  +FE M+ER+L++W
Sbjct: 149 FESL------------VFVQ---------NSLLHIYAACGDTESAYKVFELMKERDLVAW 187

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
             MI+G A NG   E L LF +M +EG +P  +     +++ A LGALE GR++H  L+ 
Sbjct: 188 NSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLK 247

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
            G   +    N+L+ +YA+CG +  A  VF+ M   ++VSW ++I  L  +G G  A+EL
Sbjct: 248 VGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALEL 307

Query: 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
           +++M  +G++P  ITF+ VL AC+H G++ EG  YF  M    GI P  +HY   +DLL 
Sbjct: 308 FKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLS 367

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626
           RAG   +A + I ++P +P+A IW  LL  C IHG++ LG  A   L  L P H+G YVL
Sbjct: 368 RAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSGDYVL 427

Query: 627 LSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKY 686
           LSN+YA+  RW D   +R+ M   GVKK PG S +E+ N+V+ F + D +HP++Q VY  
Sbjct: 428 LSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVYAL 487

Query: 687 LEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKN 746
           LE++   ++  GYVP T  VL D+E ++KE ALS HSEK+A+AF L+  P G  +RV+KN
Sbjct: 488 LEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKVAIAFMLLNTPPGTPIRVMKN 547

Query: 747 LRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           LR+C DCH A K ++K+  REIV+RD  RFHHFR G CSC DYW
Sbjct: 548 LRVCADCHMAIKLIAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 149/331 (45%), Gaps = 50/331 (15%)

Query: 40  HMISSGFKPREHIINRLIDIYCKSLKL--------VYARTLFDEIPQPDIVARTTLIAAY 91
            M+ S  +P  H    L+    KSL +        V  R  F+ +    +  + +L+  Y
Sbjct: 108 QMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESL----VFVQNSLLHIY 163

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
           +A  + + A ++F    +K RD V +N+MI  ++ N   + A+ LFR+M  + V+PD FT
Sbjct: 164 AACGDTESAYKVFEL--MKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFT 221

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             S+LSA A +   E    ++H  ++K G    + V N+L+ +Y KC           + 
Sbjct: 222 VVSLLSASAELGALELG-RRVHVYLLKVGLSKNSHVTNSLLDLYAKC---------GAIR 271

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A+RVF EM ER+ +SWT+++ G   N + + A E    M E  G+  +           
Sbjct: 272 EAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEM-EGQGLVPS----------- 319

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                     E T+  V+ AC++ G+   G +   Y  R + +      +     +V L 
Sbjct: 320 ----------EITFVGVLYACSHCGMLDEGFE---YFRRMKEECGIIPRIEHYGCMVDLL 366

Query: 332 WKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
            + G V +A +    MP + + V W  +L A
Sbjct: 367 SRAGLVKQAYEYIQNMPVQPNAVIWRTLLGA 397



 Score = 48.1 bits (113), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 33/126 (26%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R VH +++  G     H+ N L+D+Y K   +  A+ +F E+ + + V+ T+LI   +
Sbjct: 237 LGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLA 296

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                             N  G  A+ELF++M    + P   TF
Sbjct: 297 V---------------------------------NGFGEEALELFKEMEGQGLVPSEITF 323

Query: 153 TSVLSA 158
             VL A
Sbjct: 324 VGVLYA 329


>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Brachypodium distachyon]
          Length = 635

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/492 (41%), Positives = 300/492 (60%), Gaps = 5/492 (1%)

Query: 300 LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE-RDLVSWNAI 358
           LG  VHA  ++  A       L V NAL   Y  CG V   R +F+++P  RD+V+WNA+
Sbjct: 148 LGSHVHALAVKAGAAG----DLYVRNALTHFYGVCGDVGAMRTVFDELPRVRDVVTWNAV 203

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
           L+ YV AG++  A+ +FE M  R+ +SW+ ++ G  + G  +  L +F  M  +G +  +
Sbjct: 204 LAGYVRAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNE 263

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478
            A   A+++ A +G LE+GR +H  +  +G   S++ G AL+ M+++CG V  A  VF+ 
Sbjct: 264 AAVVTALSAAAQMGLLEHGRFVHEVVQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDG 323

Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG 538
           MP  D  +WNAMI  L  HG G  A+EL+ + L EG+ P  ITF+ VL+AC+  GLV EG
Sbjct: 324 MPRRDVFAWNAMICGLASHGLGQDAVELFWRFLDEGLWPTDITFVGVLNACSRCGLVAEG 383

Query: 539 RRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCR 598
           RRYF+ M   Y I P  +HY   +DLL RAG  SEA ++I+ +   P   +W  +L+ C+
Sbjct: 384 RRYFKLMVDKYRIEPEMEHYGCMVDLLGRAGLVSEAIELIEGMHIAPDPVLWGTVLSACK 443

Query: 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGC 658
            H  +DLGI    +L +L P H G YVLL+++YA   +WD+   VRKLM  RG  K  G 
Sbjct: 444 THNLVDLGITVGNKLIELEPAHDGHYVLLASIYAKAKKWDEVREVRKLMSSRGTGKSAGW 503

Query: 659 SWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYA 718
           S +E    +H FLV D  H ++  +Y  L+ +   +   GYVPD   VLHD+  ++K +A
Sbjct: 504 SLMEAQGNLHKFLVGDMDHKDSVQIYNMLDMINRRLADAGYVPDVSSVLHDIGDEEKVHA 563

Query: 719 LSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHH 778
           +  HSE+LA+A+G +    G+ +R++KNL++CGDCH   K ++KV  REI+VRDG RFHH
Sbjct: 564 IKVHSERLAIAYGFIVTEVGSPIRIVKNLQVCGDCHEFSKMVTKVFNREIIVRDGSRFHH 623

Query: 779 FRDGKCSCGDYW 790
            ++GKCSC DYW
Sbjct: 624 MKEGKCSCLDYW 635



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 125/457 (27%), Positives = 193/457 (42%), Gaps = 93/457 (20%)

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM--QMHCTVVKSGTGLFTSVLNAL 191
           + LF ++ R ++    F   S+ + L          +   +H   VK+G      V NAL
Sbjct: 112 LRLFPNLPRRNLHSFTFLLASISNHLDATDHRASSFLGSHVHALAVKAGAAGDLYVRNAL 171

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPE-RDELSWTTMMTGYVKNDYLDAAREFLDG 250
              Y  C           +GA R VFDE+P  RD ++W  ++ GYV+   + AARE  + 
Sbjct: 172 THFYGVCGD---------VGAMRTVFDELPRVRDVVTWNAVLAGYVRAGMVRAAREVFEE 222

Query: 251 MSENVGVAWNALISGYVHR-EL--------KMLMLRIQLDEFTYTSVISACANSGLFRLG 301
           M     V+W+ L+ GYV   EL         M+   ++++E    + +SA A  GL   G
Sbjct: 223 MPVRDEVSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVVTALSAAAQMGLLEHG 282

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
           + VH  + RT   P    S+ V  ALV ++ KCG V  AR++F+ MP RD+ +WNA+   
Sbjct: 283 RFVHEVVQRT-GMPV---SVNVGAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNAM--- 335

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
                                       I GLA +G G++ ++LF +   EG  P D  F
Sbjct: 336 ----------------------------ICGLASHGLGQDAVELFWRFLDEGLWPTDITF 367

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
            G + +C+  G +  GR+    +V                              +   P 
Sbjct: 368 VGVLNACSRCGLVAEGRRYFKLMVDK----------------------------YRIEPE 399

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY 541
           ++   +  M+  LG+ G  + AIEL E M    I PD + + TVLSAC    LV  G   
Sbjct: 400 ME--HYGCMVDLLGRAGLVSEAIELIEGM---HIAPDPVLWGTVLSACKTHNLVDLGITV 454

Query: 542 FETMHGPYGIPPGED-HYARFIDLLCRAGKFSEAKDV 577
              +     + P  D HY     +  +A K+ E ++V
Sbjct: 455 GNKL---IELEPAHDGHYVLLASIYAKAKKWDEVREV 488



 Score =  102 bits (254), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 150/342 (43%), Gaps = 39/342 (11%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ-PDIVARTTLI 88
           +S L   VHA  + +G     ++ N L   Y     +   RT+FDE+P+  D+V    ++
Sbjct: 145 SSFLGSHVHALAVKAGAAGDLYVRNALTHFYGVCGDVGAMRTVFDELPRVRDVVTWNAVL 204

Query: 89  AAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPD 148
           A Y  +  V+ ARE+F + P+  RD V ++ ++  Y        A+ +FRDM    V+ +
Sbjct: 205 AGYVRAGMVRAAREVFEEMPV--RDEVSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVN 262

Query: 149 NFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
                + LSA A +   E     +H  V ++G  +  +V  AL+ ++ KC          
Sbjct: 263 EAAVVTALSAAAQMGLLEHGRF-VHEVVQRTGMPVSVNVGAALVDMFSKC---------G 312

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
            +  AR VFD MP RD  +W  M+ G   +     A E            W  L  G   
Sbjct: 313 CVAVAREVFDGMPRRDVFAWNAMICGLASHGLGQDAVELF----------WRFLDEG--- 359

Query: 269 RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALV 328
                    +   + T+  V++AC+  GL   G++ +  L+  + +  PE  +     +V
Sbjct: 360 ---------LWPTDITFVGVLNACSRCGLVAEGRR-YFKLMVDKYRIEPE--MEHYGCMV 407

Query: 329 TLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLID 369
            L  + G V+EA ++   M    D V W  +LSA  +  L+D
Sbjct: 408 DLLGRAGLVSEAIELIEGMHIAPDPVLWGTVLSACKTHNLVD 449


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/621 (36%), Positives = 344/621 (55%), Gaps = 58/621 (9%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           Q+H  ++ +G    T  L+ ++           +SS  +   A  +F+ +P      + T
Sbjct: 27  QVHAHMITTGLIFHTYPLSRIL----------LISSTIVFTHALSIFNHIPNPTIFLYNT 76

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           +++              L  +  +  +A++       H  LK        + FT+ S+  
Sbjct: 77  LISS-------------LANIKPHTHIAFSLYSRVLTHTTLKP-------NGFTFPSLFK 116

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           AC +    R G+ +H ++L+        F   V  AL+  Y KCGKV   R +FNQ+ + 
Sbjct: 117 ACGSQPWLRHGRALHTHVLKFLEPTCDPF---VQAALLNYYAKCGKVGACRYLFNQISKP 173

Query: 351 DLVSWNAILSAYV-SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
           DL SWN+ILSAYV ++G I E  SL                          E L LF +M
Sbjct: 174 DLASWNSILSAYVHNSGAICEDVSL------------------------SLEVLTLFIEM 209

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
           +    K  +      I++CA LGAL  G   H  ++      +   G ALI MY++CG +
Sbjct: 210 QKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCL 269

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           + A  +F+ +P+ D++ +NAMI     HG G +A++L+++M  EG+ PD +T +  + +C
Sbjct: 270 DLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSC 329

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
           +H GLV+EG   FE+M   YG+ P  +HY   +DLL RAG+  EA++ + ++P KP+A I
Sbjct: 330 SHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVI 389

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
           W +LL   R+HGN+++G    + L QL P  +G YVLLSNMYA++ RWDD  RVRKLM+D
Sbjct: 390 WRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYASINRWDDVKRVRKLMKD 449

Query: 650 RGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHD 709
            G+ K PG S +EV   +H FL+ D  HP ++ +Y  LE++   + + G+ P T  VL D
Sbjct: 450 HGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEEMSRRLHEYGHKPRTLEVLFD 509

Query: 710 MESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIV 769
           +E ++KE ALS HSE+LA+AF L+     A +R++KNLR+CGDCH + K +SK+  REI+
Sbjct: 510 IEEEEKEDALSYHSERLAIAFALIASHHCAPIRIIKNLRVCGDCHTSSKLISKIYEREII 569

Query: 770 VRDGKRFHHFRDGKCSCGDYW 790
           VRD  RFHHF++G CSC DYW
Sbjct: 570 VRDRNRFHHFKEGACSCSDYW 590



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 125/492 (25%), Positives = 208/492 (42%), Gaps = 114/492 (23%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           + VHAHMI++G     + ++R++ I   ++   +A ++F+ IP P I    TLI++ +  
Sbjct: 26  KQVHAHMITTGLIFHTYPLSRILLI-SSTIVFTHALSIFNHIPNPTIFLYNTLISSLA-- 82

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF-RDMRRDDVKPDNFTFT 153
            N+K                              + H A  L+ R +    +KP+ FTF 
Sbjct: 83  -NIK-----------------------------PHTHIAFSLYSRVLTHTTLKPNGFTFP 112

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL---- 209
           S+           K C       ++ G  L T VL      +++    PFV +  L    
Sbjct: 113 SLF----------KACGSQ--PWLRHGRALHTHVLK-----FLEPTCDPFVQAALLNYYA 155

Query: 210 ----MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265
               +GA R +F+++ + D  SW ++++ YV N            + E+V ++   L   
Sbjct: 156 KCGKVGACRYLFNQISKPDLASWNSILSAYVHNS---------GAICEDVSLSLEVLT-- 204

Query: 266 YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
                ++M    I+ +E T  ++ISACA  G    G   H Y+L+   K     +  V  
Sbjct: 205 ---LFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLK----LNHFVGT 257

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
           AL+ +Y KCG ++ A  +F+Q+P RD + +NA                            
Sbjct: 258 ALIDMYSKCGCLDLACQLFDQLPHRDTLCYNA---------------------------- 289

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
              MI G A +GYG + L LF +M LEG  P D      + SC+ +G +E G  +   + 
Sbjct: 290 ---MIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMK 346

Query: 446 HS-GYDSSLSAGNALITMYARCG-VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
              G +  L     L+ +  R G + EA   V N     ++V W +++ A   HGN    
Sbjct: 347 EVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGN---- 402

Query: 504 IELYEQMLKEGI 515
           +E+ E +LK  I
Sbjct: 403 LEIGEVVLKHLI 414



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 139/368 (37%), Gaps = 62/368 (16%)

Query: 12  LANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYART 71
           L N   S L    P   I  SL   V  H   +  KP       L         L + R 
Sbjct: 73  LYNTLISSLANIKPHTHIAFSLYSRVLTH---TTLKPNGFTFPSLFKACGSQPWLRHGRA 129

Query: 72  LFDEI-----PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSH 126
           L   +     P  D   +  L+  Y+    V   R +FN+  +   D   +N++++AY H
Sbjct: 130 LHTHVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQ--ISKPDLASWNSILSAYVH 187

Query: 127 NSNGHA--------AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVK 178
           NS             + LF +M++  +K +  T  +++SA A +     Q    H  V+K
Sbjct: 188 NSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAEL-GALSQGAWAHVYVLK 246

Query: 179 SGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKN 238
               L   V  ALI +Y KC           +  A ++FD++P RD L +  M+ G+   
Sbjct: 247 HNLKLNHFVGTALIDMYSKC---------GCLDLACQLFDQLPHRDTLCYNAMIGGFA-- 295

Query: 239 DYLDAAREFLDGMSENVGVAWNALISGYVHREL----KMLMLRIQLDEFTYTSVISACAN 294
                                   I GY H+ L    KM +  +  D+ T    + +C++
Sbjct: 296 ------------------------IHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSH 331

Query: 295 SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER-DLV 353
            GL   G  V   +         E  L     LV L  + G++ EA +    MP + + V
Sbjct: 332 VGLVEEGCDVFESMKEVYGV---EPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAV 388

Query: 354 SWNAILSA 361
            W ++L A
Sbjct: 389 IWRSLLGA 396


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 239/670 (35%), Positives = 370/670 (55%), Gaps = 87/670 (12%)

Query: 131 HAAIELFRDMRRDDV-KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLN 189
           H A+ELF  +  +     D+ T+ +++SA  + ++  +   ++   ++ SG      + N
Sbjct: 112 HEALELFEILELNGAYDMDSETYDALVSA-CIGLKSIRGVKKVFNYMINSGLDPDEYLRN 170

Query: 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD 249
            ++ ++VKC          +M  ARR+FDEMPE++ LS                      
Sbjct: 171 RVLLMHVKC---------GMMIDARRLFDEMPEKNILS---------------------- 199

Query: 250 GMSENVGVAWNALISGYVHR-------ELKMLMLRIQLDEFT--YTSVISACANSGLFRL 300
                    WN +I G V          L ++M +   D  +  + ++I A A  GL   
Sbjct: 200 ---------WNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRMFVTMIRASAGLGLIFA 250

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           G+Q+H+  L+T         + V  AL+ +Y KCG + +A+ +F+QMPE+  V WN+I++
Sbjct: 251 GRQLHSCSLKTGVGG----DVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIA 306

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
            Y   G                               Y EE L ++ +MR  G K  ++ 
Sbjct: 307 GYALHG-------------------------------YSEEALSMYYEMRDSGVKIDNFT 335

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
           F+  I  CA L +LE+ +Q HA LV  G+   + A  AL+ +Y++ G +E A  VF+ MP
Sbjct: 336 FSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMP 395

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
           + + +SWNA+IA  G HG G  A+E++E+ML EG++P+ +TFL VLSAC+++GL   G  
Sbjct: 396 HKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWE 455

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
            FE+M   + I P   HYA  I+LL R G   EA  +I   PFKP+  +W ALL  CR+H
Sbjct: 456 IFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVH 515

Query: 601 GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSW 660
            N +LG  AAE+L+ + P     YV+L N+Y   GR ++AA V + ++ RG++  P CSW
Sbjct: 516 KNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNXSGRLEEAAAVIQTLKRRGLRMLPACSW 575

Query: 661 IEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALS 720
           IE+  + + F+  D  H +++ +Y+ L++L+LE+ K GYVP  KF+L D++ +Q+E  L 
Sbjct: 576 IEIKKQPYGFISGDKCHAQSKEIYQKLDELMLEISKHGYVPQXKFLLPDVD-EQEERVLL 634

Query: 721 THSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFR 780
            HSEKLA+AFGL+       ++++++ RICGDCH+A K ++ V  REIVVRD  RFHHF+
Sbjct: 635 YHSEKLAIAFGLINTSDWTPLQIVQSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFK 694

Query: 781 DGKCSCGDYW 790
           DG CSCGDYW
Sbjct: 695 DGSCSCGDYW 704



 Score =  129 bits (323), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 120/519 (23%), Positives = 220/519 (42%), Gaps = 115/519 (22%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           + V  +MI+SG  P E++ NR++ ++ K   ++ AR LFDE+P+ +I++           
Sbjct: 151 KKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILS----------- 199

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
                                 +N +I       +   A  LF  M +      +  F +
Sbjct: 200 ----------------------WNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRMFVT 237

Query: 155 VLSA---LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           ++ A   L LI        Q+H   +K+G G    V  ALI +Y KC S         + 
Sbjct: 238 MIRASAGLGLIFAGR----QLHSCSLKTGVGGDVFVACALIDMYSKCGS---------IE 284

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A+ VFD+MPE+  + W +++ GY  + Y + A      M +          SG      
Sbjct: 285 DAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRD----------SG------ 328

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV--NNALVT 329
                 +++D FT++ +I  CA        KQ HA L+R        F L +  N ALV 
Sbjct: 329 ------VKIDNFTFSIIIRICARLASLEHAKQAHAGLVRH------GFGLDIVANTALVD 376

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           LY K G++ +A+ +F+ MP ++++SWNA+++ Y                           
Sbjct: 377 LYSKWGRIEDAKHVFDMMPHKNVISWNALIAGY--------------------------- 409

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
                 +G G E +++F +M  EG  P    F   +++C+  G  + G ++   +     
Sbjct: 410 ----GNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHK 465

Query: 450 DSSLSAGNA-LITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGNGARAIELY 507
               +   A +I +  R G+++ A  +    P   +V+ W A++ A   H N        
Sbjct: 466 IKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAA 525

Query: 508 EQMLKEGILPDRIT-FLTVLSACNHAGLVKEGRRYFETM 545
           E++   G+ P++++ ++ +L+  N +G ++E     +T+
Sbjct: 526 EKLY--GMGPEKLSNYVVLLNIYNXSGRLEEAAAVIQTL 562



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 148/341 (43%), Gaps = 43/341 (12%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+     LI  YS   +++ A+ +F++ P K   TV +N++I  Y+ +     A+ ++ +
Sbjct: 266 DVFVACALIDMYSKCGSIEDAQCVFDQMPEKT--TVGWNSIIAGYALHGYSEEALSMYYE 323

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           MR   VK DNFTF+ ++   A +   E    Q H  +V+ G GL      AL+ +Y    
Sbjct: 324 MRDSGVKIDNFTFSIIIRICARLASLE-HAKQAHAGLVRHGFGLDIVANTALVDLY---- 378

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                S    +  A+ VFD MP ++ +SW  ++ GY  +     A E  +          
Sbjct: 379 -----SKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFE---------- 423

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT-EAKPTPE 318
                       +ML   +  +  T+ +V+SAC+ SGL   G ++   + R  + KP   
Sbjct: 424 ------------RMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAM 471

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSA---YVSAGLIDEAKSL 374
                   ++ L  + G ++EA  +    P +  V+ W A+L+A   + +  L   A   
Sbjct: 472 HY----ACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEK 527

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
              M    L ++ V+++    +G  EE   +   ++  G +
Sbjct: 528 LYGMGPEKLSNYVVLLNIYNXSGRLEEAAAVIQTLKRRGLR 568



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 6/132 (4%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQP----DIVARTT 86
           S  A S++  M  SG K      + +I I  +   L +A+     + +     DIVA T 
Sbjct: 314 SEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTA 373

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           L+  YS    ++ A+ +F+  P K  + + +NA+I  Y ++  G  A+E+F  M  + + 
Sbjct: 374 LVDLYSKWGRIEDAKHVFDMMPHK--NVISWNALIAGYGNHGRGVEAVEMFERMLHEGMV 431

Query: 147 PDNFTFTSVLSA 158
           P++ TF +VLSA
Sbjct: 432 PNHVTFLAVLSA 443


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 260/721 (36%), Positives = 376/721 (52%), Gaps = 84/721 (11%)

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR 142
           A   L++ Y+    V  A+ +F        D V +N M++    +     A++   DM  
Sbjct: 205 AFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVA 264

Query: 143 DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS-VLNALISVYVKCVSS 201
             V+PD  TF S L A + + E      +MH  V+K       S V +AL+ +Y      
Sbjct: 265 LGVRPDGVTFASALPACSRL-ELLDVGREMHAYVIKDDELAANSFVASALVDMY------ 317

Query: 202 PFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNA 261
              ++   +G AR+VFD +P                    D+ ++   GM       WNA
Sbjct: 318 ---ATHEQVGKARQVFDMVP--------------------DSGKQL--GM-------WNA 345

Query: 262 LISGYVH----RELKMLMLRIQLD------EFTYTSVISACANSGLFRLGKQVHAYLLRT 311
           +I GY       E   L  R++ +      E T  SV+ ACA S  F   + VH Y+++ 
Sbjct: 346 MICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVK- 404

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
                  F   V NAL+ +Y + GK + AR IF  +   D+VSWN +++  V  G + +A
Sbjct: 405 RGMAGNRF---VQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADA 461

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
              F+  RE   L               EEG          G  P        +  CA L
Sbjct: 462 ---FQLAREMQQL---------------EEG----------GVVPNAITLMTLLPGCAIL 493

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
            A   G+++H   V    D+ ++ G+AL+ MYA+CG +  +  VF+ +P  ++++WN +I
Sbjct: 494 AAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLI 553

Query: 492 AALGQHGNGARAIELYEQMLKEG-ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
            A G HG G  A  L+++M   G   P+ +TF+  L+AC+H+G+V  G + F  M   +G
Sbjct: 554 MAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHG 613

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF-KPSAPIWEALLAGCRIHGNIDLGIQA 609
           + P  D  A  +D+L RAG+  EA  ++ S+   +     W  +L  CR+H N+ LG  A
Sbjct: 614 VEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIA 673

Query: 610 AEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHV 669
            E+L +L P  A  YVLL N+Y+  G+W  AA VR  MR RGV KEPGCSWIEVD  +H 
Sbjct: 674 GERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHR 733

Query: 670 FLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVA 729
           F+  ++AHP ++ V+ ++E L  EM   GY PDT  VLHDM+   K   L  HSEKLA+A
Sbjct: 734 FMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIA 793

Query: 730 FGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
           FGL++   GAT+RV KNLR+C DCH A KF+SK+VGREIV+RD +RFHHFR+G+CSCGDY
Sbjct: 794 FGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDY 853

Query: 790 W 790
           W
Sbjct: 854 W 854



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 138/542 (25%), Positives = 232/542 (42%), Gaps = 90/542 (16%)

Query: 77  PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
           P P +     L+ AY+    +  A E+F        D V +N++I+A         A+  
Sbjct: 92  PSPAVA--NALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAA 149

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALI---VEEEKQCMQMHCTVVKSGT--GLFTSVLNAL 191
            R M        +FT  SVL A++ +       +   + H   +K+G   G      NAL
Sbjct: 150 LRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNAL 209

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVF-DEMPER-DELSWTTMMTGYVKNDYLDAAREFLD 249
           +S+Y +           L+  A+R+F    P R D ++W TM++  V++   D A + L 
Sbjct: 210 LSMYARL---------GLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTL- 259

Query: 250 GMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
                                  M+ L ++ D  T+ S + AC+   L  +G+++HAY++
Sbjct: 260 ---------------------YDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVI 298

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--RDLVSWNAILSAYVSAGL 367
           + +      F   V +ALV +Y    +V +AR +F+ +P+  + L  WNA++  Y  AG+
Sbjct: 299 KDDELAANSF---VASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGM 355

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAIT 426
                                           EE L+LF++M  E GF PC+   A  + 
Sbjct: 356 -------------------------------DEEALRLFARMEAEAGFVPCETTMASVLP 384

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
           +CA   A      +H  +V  G   +    NAL+ MYAR G  + A  +F  +   D VS
Sbjct: 385 ACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVS 444

Query: 487 WNAMIAALGQHGNGARAIELYEQM--LKE-GILPDRITFLTVLSACNHAGLVKEGRRYFE 543
           WN +I      G+ A A +L  +M  L+E G++P+ IT +T+L  C        G+    
Sbjct: 445 WNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKE--- 501

Query: 544 TMHGPYGIPPGEDH----YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI 599
            +HG Y +    D      +  +D+  + G  + ++ V D LP + +   W  L+    +
Sbjct: 502 -IHG-YAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLP-RRNTITWNVLIMAYGM 558

Query: 600 HG 601
           HG
Sbjct: 559 HG 560



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 156/352 (44%), Gaps = 45/352 (12%)

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
           DE+     VA + L+  Y+  + V  AR++F+  P   +    +NAMI  Y+       A
Sbjct: 301 DELAANSFVA-SALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEA 359

Query: 134 IELFRDMRRD-DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           + LF  M  +    P   T  SVL A A   E       +H  VVK G      V NAL+
Sbjct: 360 LRLFARMEAEAGFVPCETTMASVLPACAR-SEAFAGKEAVHGYVVKRGMAGNRFVQNALM 418

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
            +Y +   +           ARR+F  +   D +SW T++TG V   ++  A +    M 
Sbjct: 419 DMYARLGKTDV---------ARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQ 469

Query: 253 --ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
             E  GV  NA+                     T  +++  CA       GK++H Y +R
Sbjct: 470 QLEEGGVVPNAI---------------------TLMTLLPGCAILAAPARGKEIHGYAVR 508

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
                  +  + V +ALV +Y KCG +  +R +F+++P R+ ++WN ++ AY   GL  E
Sbjct: 509 H----ALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGE 564

Query: 371 AKSLFEAMRER-----NLLSWTVMISGLAQNGYGEEGLKLFSQM-RLEGFKP 416
           A  LF+ M        N +++   ++  + +G  + GL+LF  M R  G +P
Sbjct: 565 ATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEP 616



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 135/333 (40%), Gaps = 76/333 (22%)

Query: 36  SVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY---- 91
           +VH +++  G      + N L+D+Y +  K   AR +F  +  PD+V+  TLI       
Sbjct: 397 AVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQG 456

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
             +D  +LAREM                                  + +    V P+  T
Sbjct: 457 HVADAFQLAREM----------------------------------QQLEEGGVVPNAIT 482

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             ++L   A++    +   ++H   V+       +V +AL+ +Y KC           + 
Sbjct: 483 LMTLLPGCAILAAPARG-KEIHGYAVRHALDTDVAVGSALVDMYAKC---------GCLA 532

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            +R VFD +P R+ ++W  ++  Y  +     A    D M+           SG      
Sbjct: 533 LSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTA----------SG------ 576

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQV-HAYLLRTEAKPTPEFSLPVNNALVTL 330
                  + +E T+ + ++AC++SG+   G Q+ HA       +PTP+    +   +V +
Sbjct: 577 -----EARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPD----ILACVVDI 627

Query: 331 YWKCGKVNEARDIFNQMP--ERDLVSWNAILSA 361
             + G+++EA  +   M   E+ + +W+ +L A
Sbjct: 628 LGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGA 660



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 116/285 (40%), Gaps = 59/285 (20%)

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSG--YDSSLSAGNALITMYARCGVVEAANCVFN 477
           A   AI S A L    + R +HA  +  G  +  S +  NAL+T YARCG + AA  VF 
Sbjct: 59  ALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFG 118

Query: 478 TMPNV--DSVSWNAMIAAL------------------GQH-----------------GNG 500
           ++ +   D+VS+N++I+AL                  G H                    
Sbjct: 119 SISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAA 178

Query: 501 ARAIELYEQ----MLKEGIL--PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
           A A+ L  +     LK G+L    R  F  +LS     GLV + +R F       G  PG
Sbjct: 179 AAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFA------GATPG 232

Query: 555 EDH---YARFIDLLCRAGKFSEAKDVI---DSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
                 +   + +L ++G F EA   +    +L  +P    + + L  C     +D+G +
Sbjct: 233 RGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGRE 292

Query: 609 AAEQLFQLMPHHAGTYV--LLSNMYANLGRWDDAARVRKLMRDRG 651
               + +     A ++V   L +MYA   +   A +V  ++ D G
Sbjct: 293 MHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSG 337



 Score = 42.4 bits (98), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 6/141 (4%)

Query: 25  PRNPITSSLARS--VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIV 82
           P   I ++ AR   +H + +         + + L+D+Y K   L  +R +FD +P+ + +
Sbjct: 488 PGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTI 547

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMR---DTVFYNAMITAYSHNSNGHAAIELFRD 139
               LI AY        A  +F++         + V + A + A SH+      ++LF  
Sbjct: 548 TWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHA 607

Query: 140 MRRD-DVKPDNFTFTSVLSAL 159
           M RD  V+P       V+  L
Sbjct: 608 MERDHGVEPTPDILACVVDIL 628


>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
          Length = 651

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/492 (41%), Positives = 300/492 (60%), Gaps = 5/492 (1%)

Query: 300 LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE-RDLVSWNAI 358
           LG  VHA  ++  A       L V NALV  Y   G V   R +F+++P  RD+++WN +
Sbjct: 164 LGSHVHALAVKAGAAG----DLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEV 219

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
           L+ YV AG++  A+ +F+ M  R+ +SW+ ++ G  +    E  L +F  M  +G +P  
Sbjct: 220 LAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQ 279

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478
            A   A+++ A LG LE+G+ +H  +  SG    ++ G AL+ MYA+CG V  A  VF+ 
Sbjct: 280 AAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDG 339

Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG 538
           M   D  +WNAMI  L  HG G  A+EL+E+ + EG+ P  +TF+ VL+ C+ +GLV EG
Sbjct: 340 MRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEG 399

Query: 539 RRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCR 598
           RRYF+ +   Y I P  +HY   +DLL RAG   EA ++I+ +   P   +W  +L+ C+
Sbjct: 400 RRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCK 459

Query: 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGC 658
            HG +DLG+    +L +L P H+G YVLLS +YA   +WD+   VRKLM  RG  K  G 
Sbjct: 460 THGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGW 519

Query: 659 SWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYA 718
           S +E   KVH FLV DT H ++  +Y  L+ +   + + GYVPD   VLHD+  ++K +A
Sbjct: 520 SLMEAHGKVHKFLVGDTYHKDSVQIYDTLDMINKRLTEAGYVPDVSSVLHDIGEEEKVHA 579

Query: 719 LSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHH 778
           +  HSE+LA+A+G + L  G+ +R++KNLR+CGDCH   K ++ V  REI+VRDG RFHH
Sbjct: 580 VKVHSERLAIAYGFIVLEAGSPIRIVKNLRVCGDCHEFSKMVTMVFQREIIVRDGSRFHH 639

Query: 779 FRDGKCSCGDYW 790
            ++GKCSC DYW
Sbjct: 640 MKEGKCSCLDYW 651



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 124/464 (26%), Positives = 188/464 (40%), Gaps = 105/464 (22%)

Query: 134 IELFRDMRRDDVKPDNFTF--TSVLSALALIVEEEKQCM----QMHCTVVKSGTGLFTSV 187
           + LF   RR +  P +FTF   S+ + L         C      +H   VK+G      V
Sbjct: 126 LTLFSRFRRRN--PHSFTFLLASISNHLNAAGPSASACSFLGSHVHALAVKAGAAGDLFV 183

Query: 188 LNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE-RDELSWTTMMTGYVKNDYLDAARE 246
            NAL+  Y              +GA RRVFDE+P  RD L+W  ++ GYV+   +  ARE
Sbjct: 184 RNALVHFY---------GVSGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRAGMMTVARE 234

Query: 247 FLDGMSENVGVAWNALISGYVHRE---------LKMLMLRIQLDEFTYTSVISACANSGL 297
             D M     ++W+ L+ GYV  E           M+   ++ ++    + +SA A  GL
Sbjct: 235 VFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGL 294

Query: 298 FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA 357
              GK VH  + R+   P     + V  ALV +Y KCG V  AR++F+ M  RD+ +WNA
Sbjct: 295 LEHGKFVHNVVQRS-GMPV---CMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNA 350

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
           +                               I GLA +G G + ++LF +   EG  P 
Sbjct: 351 M-------------------------------ICGLAAHGLGRDAVELFERFISEGLSPT 379

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
           +  F G +  C+  G +  GR+    +V                              + 
Sbjct: 380 NVTFVGVLNGCSRSGLVAEGRRYFKLIVEK----------------------------YR 411

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL--- 534
             P ++   +  M+  LG+ G    AIEL E M    I PD + + T+LS+C   GL   
Sbjct: 412 IEPEME--HYGCMVDLLGRAGLVPEAIELIEGM---HIAPDPVLWGTILSSCKTHGLVDL 466

Query: 535 -VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577
            V  G +  E        P    +Y     +  +A K+ E ++V
Sbjct: 467 GVSVGNKLIEL------DPTHSGYYVLLSGIYAKANKWDEVREV 504



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 169/395 (42%), Gaps = 43/395 (10%)

Query: 4   KNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKS 63
           +N      L    ++ L    P     S L   VHA  + +G      + N L+  Y  S
Sbjct: 135 RNPHSFTFLLASISNHLNAAGPSASACSFLGSHVHALAVKAGAAGDLFVRNALVHFYGVS 194

Query: 64  LKLVYARTLFDEIPQ-PDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
             +   R +FDE+P+  D++    ++A Y  +  + +ARE+F++ P+  RD + ++ ++ 
Sbjct: 195 GDVGAMRRVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFDEMPV--RDEISWSTLVG 252

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTG 182
            Y        A+ +FR+M    V+P+     + LSA A +   E     +H  V +SG  
Sbjct: 253 GYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHGKF-VHNVVQRSGMP 311

Query: 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY-L 241
           +  +V  AL+ +Y KC           +  AR VFD M  RD  +W  M+ G   +    
Sbjct: 312 VCMNVGAALVDMYAKC---------GCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGR 362

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
           DA   F   +SE                        +     T+  V++ C+ SGL   G
Sbjct: 363 DAVELFERFISEG-----------------------LSPTNVTFVGVLNGCSRSGLVAEG 399

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILS 360
           ++ +  L+  + +  PE  +     +V L  + G V EA ++   M    D V W  ILS
Sbjct: 400 RR-YFKLIVEKYRIEPE--MEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILS 456

Query: 361 AYVSAGLIDEAKSLFEAMRERNLL--SWTVMISGL 393
           +  + GL+D   S+   + E +     + V++SG+
Sbjct: 457 SCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGI 491


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 259/718 (36%), Positives = 375/718 (52%), Gaps = 84/718 (11%)

Query: 86  TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
            L++ Y+    V  A+ +F        D V +N M++    +     A++   DM    V
Sbjct: 210 ALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGV 269

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS-VLNALISVYVKCVSSPFV 204
           +PD  TF S L A + + E      +MH  V+K       S V +AL+ +Y         
Sbjct: 270 RPDGVTFASALPACSRL-ELLDVGREMHAYVIKDDELAANSFVASALVDMY--------- 319

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
           ++   +G AR+VFD +P                    D+ ++   GM       WNA+I 
Sbjct: 320 ATHEQVGKARQVFDMVP--------------------DSGKQL--GM-------WNAMIC 350

Query: 265 GYVH----RELKMLMLRIQLD------EFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
           GY       E   L  R++ +      E T  SV+ ACA S  F   + VH Y+++    
Sbjct: 351 GYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVK-RGM 409

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
               F   V NAL+ +Y + GK + AR IF  +   D+VSWN +++  V  G + +A   
Sbjct: 410 AGNRF---VQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADA--- 463

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
           F+  RE   L               EEG          G  P        +  CA L A 
Sbjct: 464 FQLAREMQQL---------------EEG----------GVVPNAITLMTLLPGCAILAAP 498

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
             G+++H   V    D+ ++ G+AL+ MYA+CG +  +  VF+ +P  ++++WN +I A 
Sbjct: 499 ARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAY 558

Query: 495 GQHGNGARAIELYEQMLKEG-ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
           G HG G  A  L+++M   G   P+ +TF+  L+AC+H+G+V  G + F  M   +G+ P
Sbjct: 559 GMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEP 618

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPF-KPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
             D  A  +D+L RAG+  EA  ++ S+   +     W  +L  CR+H N+ LG  A E+
Sbjct: 619 TPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGER 678

Query: 613 LFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLV 672
           L +L P  A  YVLL N+Y+  G+W  AA VR  MR RGV KEPGCSWIEVD  +H F+ 
Sbjct: 679 LLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMA 738

Query: 673 DDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGL 732
            ++AHP ++ V+ ++E L  EM   GY PDT  VLHDM+   K   L  HSEKLA+AFGL
Sbjct: 739 GESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGL 798

Query: 733 MKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           ++   GAT+RV KNLR+C DCH A KF+SK+VGREIV+RD +RFHHFR+G+CSCGDYW
Sbjct: 799 LRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 856



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 139/540 (25%), Positives = 230/540 (42%), Gaps = 86/540 (15%)

Query: 77  PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
           P P +     L+ AY+    +  A E+F        D V +N++I+A         A+  
Sbjct: 94  PSPAVA--NALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAA 151

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALI---VEEEKQCMQMHCTVVKSGT--GLFTSVLNAL 191
            R M        +FT  SVL A++ +       +   + H   +K+G   G      NAL
Sbjct: 152 LRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNAL 211

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVF-DEMPER-DELSWTTMMTGYVKNDYLDAAREFLD 249
           +S+Y +           L+  A+R+F    P R D ++W TM++  V++   D A + L 
Sbjct: 212 LSMYARL---------GLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTL- 261

Query: 250 GMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
                                  M+ L ++ D  T+ S + AC+   L  +G+++HAY++
Sbjct: 262 ---------------------YDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVI 300

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLID 369
           + +      F   V +ALV +Y    +V +AR +F+ +P+                    
Sbjct: 301 KDDELAANSF---VASALVDMYATHEQVGKARQVFDMVPDSG------------------ 339

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSC 428
                      + L  W  MI G AQ G  EE L+LF++M  E GF PC+   A  + +C
Sbjct: 340 -----------KQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPAC 388

Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
           A   A      +H  +V  G   +    NAL+ MYAR G  + A  +F  +   D VSWN
Sbjct: 389 ARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWN 448

Query: 489 AMIAALGQHGNGARAIELYEQM--LKE-GILPDRITFLTVLSACNHAGLVKEGRRYFETM 545
            +I      G+ A A +L  +M  L+E G++P+ IT +T+L  C        G+     +
Sbjct: 449 TLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKE----I 504

Query: 546 HGPYGIPPGEDH----YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
           HG Y +    D      +  +D+  + G  + ++ V D LP + +   W  L+    +HG
Sbjct: 505 HG-YAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLP-RRNTITWNVLIMAYGMHG 562



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 156/352 (44%), Gaps = 45/352 (12%)

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
           DE+     VA + L+  Y+  + V  AR++F+  P   +    +NAMI  Y+       A
Sbjct: 303 DELAANSFVA-SALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEA 361

Query: 134 IELFRDMRRD-DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           + LF  M  +    P   T  SVL A A   E       +H  VVK G      V NAL+
Sbjct: 362 LRLFARMEAEAGFVPCETTMASVLPACAR-SEAFAGKEAVHGYVVKRGMAGNRFVQNALM 420

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
            +Y +   +           ARR+F  +   D +SW T++TG V   ++  A +    M 
Sbjct: 421 DMYARLGKTDV---------ARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQ 471

Query: 253 --ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
             E  GV  NA+                     T  +++  CA       GK++H Y +R
Sbjct: 472 QLEEGGVVPNAI---------------------TLMTLLPGCAILAAPARGKEIHGYAVR 510

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
                  +  + V +ALV +Y KCG +  +R +F+++P R+ ++WN ++ AY   GL  E
Sbjct: 511 H----ALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGE 566

Query: 371 AKSLFEAMRER-----NLLSWTVMISGLAQNGYGEEGLKLFSQM-RLEGFKP 416
           A  LF+ M        N +++   ++  + +G  + GL+LF  M R  G +P
Sbjct: 567 ATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEP 618



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 135/333 (40%), Gaps = 76/333 (22%)

Query: 36  SVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY---- 91
           +VH +++  G      + N L+D+Y +  K   AR +F  +  PD+V+  TLI       
Sbjct: 399 AVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQG 458

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
             +D  +LAREM                                  + +    V P+  T
Sbjct: 459 HVADAFQLAREM----------------------------------QQLEEGGVVPNAIT 484

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             ++L   A++    +   ++H   V+       +V +AL+ +Y KC           + 
Sbjct: 485 LMTLLPGCAILAAPARG-KEIHGYAVRHALDTDVAVGSALVDMYAKC---------GCLA 534

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            +R VFD +P R+ ++W  ++  Y  +     A    D M+           SG      
Sbjct: 535 LSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTA----------SG------ 578

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQV-HAYLLRTEAKPTPEFSLPVNNALVTL 330
                  + +E T+ + ++AC++SG+   G Q+ HA       +PTP+    +   +V +
Sbjct: 579 -----EARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPD----ILACVVDI 629

Query: 331 YWKCGKVNEARDIFNQMP--ERDLVSWNAILSA 361
             + G+++EA  +   M   E+ + +W+ +L A
Sbjct: 630 LGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGA 662



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 116/285 (40%), Gaps = 59/285 (20%)

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSG--YDSSLSAGNALITMYARCGVVEAANCVFN 477
           A   AI S A L    + R +HA  +  G  +  S +  NAL+T YARCG + AA  VF 
Sbjct: 61  ALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFG 120

Query: 478 TMPNV--DSVSWNAMIAAL------------------GQH-----------------GNG 500
           ++ +   D+VS+N++I+AL                  G H                    
Sbjct: 121 SISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAA 180

Query: 501 ARAIELYEQ----MLKEGIL--PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
           A A+ L  +     LK G+L    R  F  +LS     GLV + +R F       G  PG
Sbjct: 181 AAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFA------GATPG 234

Query: 555 EDH---YARFIDLLCRAGKFSEAKDVI---DSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
                 +   + +L ++G F EA   +    +L  +P    + + L  C     +D+G +
Sbjct: 235 RGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGRE 294

Query: 609 AAEQLFQLMPHHAGTYV--LLSNMYANLGRWDDAARVRKLMRDRG 651
               + +     A ++V   L +MYA   +   A +V  ++ D G
Sbjct: 295 MHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSG 339



 Score = 42.0 bits (97), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 6/141 (4%)

Query: 25  PRNPITSSLARS--VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIV 82
           P   I ++ AR   +H + +         + + L+D+Y K   L  +R +FD +P+ + +
Sbjct: 490 PGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTI 549

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMR---DTVFYNAMITAYSHNSNGHAAIELFRD 139
               LI AY        A  +F++         + V + A + A SH+      ++LF  
Sbjct: 550 TWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHA 609

Query: 140 MRRD-DVKPDNFTFTSVLSAL 159
           M RD  V+P       V+  L
Sbjct: 610 MERDHGVEPTPDILACVVDIL 630


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 243/710 (34%), Positives = 367/710 (51%), Gaps = 78/710 (10%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
             L+A Y+ S+  K A  +F+  P   RD + +N+MI+  + N     AIELF  M  + 
Sbjct: 235 NALMAFYAKSNRTKDAILVFDGMP--HRDVISWNSMISGCTSNGLYDKAIELFVRMWLEG 292

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQM----HCTVVKSGTGLFTSVLNALISVYVKCVS 200
            + D+ T  SVL A A     E   + +    H   VK+G    TS+ N L+ +Y  C  
Sbjct: 293 EELDSATLLSVLPACA-----ELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNC-- 345

Query: 201 SPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWN 260
                  S   +  ++F  M +++ +SWT M+T Y +    D     + G+ + +G+   
Sbjct: 346 -------SDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDK----VAGLFQEMGLEGT 394

Query: 261 ALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
                             + D F  TS + A A + L + GK VH Y +R          
Sbjct: 395 ------------------RPDIFAITSALHAFAGNELLKHGKSVHGYAIR---------- 426

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
                                   N M E+ L   NA++  YV  G ++EAK +F+ +  
Sbjct: 427 ------------------------NGM-EKVLAVTNALMEMYVKCGNMEEAKLIFDGVVS 461

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
           ++++SW  +I G ++N    E   LF++M L+  +P        + + A L +LE GR++
Sbjct: 462 KDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVTMTCILPAAASLSSLERGREM 520

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           HA  +  GY       NALI MY +CG +  A  +F+ + N + +SW  M+A  G HG G
Sbjct: 521 HAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRG 580

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
             AI L+EQM   GI PD  +F  +L AC+H+GL  EG R+F+ M   + I P   HY  
Sbjct: 581 RDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTC 640

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
            +DLL   G   EA + IDS+P +P + IW +LL GCRIH N+ L  + AE++F+L P +
Sbjct: 641 MVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPEN 700

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEA 680
            G YVLL+N+YA   RW+   +++  +  RG+++  GCSWIE   KVHVF+ D+  HP+ 
Sbjct: 701 TGYYVLLANIYAEAERWEAVRKLKNKIGGRGLRENTGCSWIEAKGKVHVFIADNRNHPQG 760

Query: 681 QAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT 740
             + ++L ++   M++ G+ P  K+ L   ++     AL  HS KLAVAFG++ L  G  
Sbjct: 761 TRIAEFLNEVAKRMQEEGHDPKKKYALMGADNAVHGEALCGHSSKLAVAFGVLNLSEGRL 820

Query: 741 VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +RV KN R+C  CH A KF+SK+  REI++RD  RFHHF  G+CSC  YW
Sbjct: 821 IRVTKNSRVCSHCHEAAKFISKMCSREIILRDSNRFHHFEQGRCSCRGYW 870



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 145/538 (26%), Positives = 243/538 (45%), Gaps = 79/538 (14%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D V    L+  Y    +++ AR +F++ P ++ D   + A+++ Y+   +    + LFR 
Sbjct: 128 DNVLGQKLVLMYLKCGDLENARRVFDEMP-QVSDVRVWTALMSGYAKAGDLREGVLLFRK 186

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M    V+PD +T + VL  +A +   E   + +H  + K G G   +V NAL++ Y K  
Sbjct: 187 MHCCGVRPDAYTISCVLKCIAGLGSIEDGEV-VHGLLEKLGFGSQCAVGNALMAFYAK-- 243

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                S+R+    A  VFD MP RD +SW +M++G   N   D A E             
Sbjct: 244 -----SNRT--KDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELF----------- 285

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                      ++M +   +LD  T  SV+ ACA   L  LG+ VH Y ++T        
Sbjct: 286 -----------VRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSL 334

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
           +    N L+ +Y  C        IF  M ++++VSW A++++Y  AGL D+   LF+   
Sbjct: 335 A----NVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQ--- 387

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
                                       +M LEG +P  +A   A+ + AG   L++G+ 
Sbjct: 388 ----------------------------EMGLEGTRPDIFAITSALHAFAGNELLKHGKS 419

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           +H   + +G +  L+  NAL+ MY +CG +E A  +F+ + + D +SWN +I    ++  
Sbjct: 420 VHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNL 479

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG--EDH 557
              A  L+ +ML + + P+ +T   +L A      ++ GR     MH  Y +  G  ED 
Sbjct: 480 ANEAFSLFTEMLLQ-LRPNAVTMTCILPAAASLSSLERGRE----MHA-YALRRGYLEDD 533

Query: 558 YA--RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
           +     ID+  + G    A+ + D L  K +   W  ++AG  +HG     I   EQ+
Sbjct: 534 FVANALIDMYVKCGALLLARRLFDRLSNK-NLISWTIMVAGYGMHGRGRDAIALFEQM 590



 Score =  129 bits (323), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 186/438 (42%), Gaps = 84/438 (19%)

Query: 191 LISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS-WTTMMTGYVKNDYLDAAREFLD 249
           L+ +Y+KC           +  ARRVFDEMP+  ++  WT +M+GY K      A +  +
Sbjct: 135 LVLMYLKCGD---------LENARRVFDEMPQVSDVRVWTALMSGYAK------AGDLRE 179

Query: 250 GMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
           G+               + R  KM    ++ D +T + V+   A  G    G+ VH  L 
Sbjct: 180 GV--------------LLFR--KMHCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLL- 222

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLID 369
               K        V NAL+  Y K  +  +A  +F+ MP RD++SWN+++S   S GL D
Sbjct: 223 ---EKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYD 279

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
           +A                               ++LF +M LEG +         + +CA
Sbjct: 280 KA-------------------------------IELFVRMWLEGEELDSATLLSVLPACA 308

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNA 489
            L  L  GR +H   V +G+ S  S  N L+ MY+ C    + N +F  M   + VSW A
Sbjct: 309 ELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTA 368

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY 549
           MI +  + G   +   L+++M  EG  PD     + L A     L+K G+    ++HG Y
Sbjct: 369 MITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGK----SVHG-Y 423

Query: 550 GIPPGEDHYA----RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDL 605
            I  G +         +++  + G   EAK + D +  K     W  L+ G   +   +L
Sbjct: 424 AIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMIS-WNTLIGG---YSRNNL 479

Query: 606 GIQA----AEQLFQLMPH 619
             +A     E L QL P+
Sbjct: 480 ANEAFSLFTEMLLQLRPN 497



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 132/276 (47%), Gaps = 38/276 (13%)

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
           +D+ +Y +V+  C+       GK+ H +L+R  +         +   LV +Y KCG +  
Sbjct: 89  VDDRSYGAVLQLCSEVRSLEGGKRAH-FLVRASSLGRDGMDNVLGQKLVLMYLKCGDLEN 147

Query: 340 ARDIFNQMPE-RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGY 398
           AR +F++MP+  D+  W A++S Y  AG +                              
Sbjct: 148 ARRVFDEMPQVSDVRVWTALMSGYAKAGDL------------------------------ 177

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
             EG+ LF +M   G +P  Y  +  +   AGLG++E+G  +H  L   G+ S  + GNA
Sbjct: 178 -REGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNA 236

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           L+  YA+    + A  VF+ MP+ D +SWN+MI+    +G   +AIEL+ +M  EG   D
Sbjct: 237 LMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELD 296

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
             T L+VL AC    L+  GR     +HG Y +  G
Sbjct: 297 SATLLSVLPACAELHLLFLGR----VVHG-YSVKTG 327



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 135/327 (41%), Gaps = 70/327 (21%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            +SVH + I +G +    + N L+++Y K   +  A+ +FD +   D+++  TLI  YS 
Sbjct: 417 GKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSR 476

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
           ++    A  +F +  L++R                                  P+  T T
Sbjct: 477 NNLANEAFSLFTEMLLQLR----------------------------------PNAVTMT 502

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
            +L A A +   E+   +MH   ++ G      V NALI +YVKC           +  A
Sbjct: 503 CILPAAASLSSLERG-REMHAYALRRGYLEDDFVANALIDMYVKC---------GALLLA 552

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           RR+FD +  ++ +SWT M+ GY  +     A    + M           +SG        
Sbjct: 553 RRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMR----------VSG-------- 594

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
               I  D  ++++++ AC++SGL   G +     +R E K  P   L     +V L   
Sbjct: 595 ----IAPDAASFSAILYACSHSGLRDEGWRFFD-AMRKEHKIEPR--LKHYTCMVDLLIN 647

Query: 334 CGKVNEARDIFNQMP-ERDLVSWNAIL 359
            G + EA +  + MP E D   W ++L
Sbjct: 648 TGNLKEAYEFIDSMPIEPDSSIWVSLL 674



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 106/246 (43%), Gaps = 25/246 (10%)

Query: 28  PITSSLA-----RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIV 82
           P  +SL+     R +HA+ +  G+   + + N LID+Y K   L+ AR LFD +   +++
Sbjct: 506 PAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLI 565

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLK--MRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
           + T ++A Y      + A  +F +  +     D   ++A++ A SH+         F  M
Sbjct: 566 SWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAM 625

Query: 141 RRD-DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL-ISVYVKC 198
           R++  ++P    +T ++  L      ++    +    ++  + ++ S+L    I   VK 
Sbjct: 626 RKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNVKL 685

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD-----GMSE 253
                         A RVF+  PE     +  +   Y + +  +A R+  +     G+ E
Sbjct: 686 AEE----------VAERVFELEPENTGY-YVLLANIYAEAERWEAVRKLKNKIGGRGLRE 734

Query: 254 NVGVAW 259
           N G +W
Sbjct: 735 NTGCSW 740


>gi|449510831|ref|XP_004163774.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 556

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/531 (41%), Positives = 314/531 (59%), Gaps = 38/531 (7%)

Query: 262 LISGYVHRELKMLMLR--IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
           L++  V  E+  L+L     LDE +++SV SACAN+G    GKQVH   L+         
Sbjct: 62  LMAEKVFEEMPTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNL--- 118

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
            + +NN+L  +Y KCG                               L ++   LF    
Sbjct: 119 -VYINNSLSDMYGKCG-------------------------------LFNDVAKLFSNTG 146

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
            R++++W +MI     N   E+    F  MR +G  P + +++  + SCA L AL  G  
Sbjct: 147 ARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTL 206

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           +H Q++ SG+  +L   ++LITMYA+CG +  A  +F    + + V W A+IAA  QHG+
Sbjct: 207 IHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHGH 266

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA 559
               +EL+EQML+EGI PD ITF++VLSAC+H G V+EG  YF +M   +GI PG +HYA
Sbjct: 267 ANWVVELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYA 326

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
             +DLL RAG+   AK  I+ +P KP A +W ALL+ CR H N+ +G + A +LF L P 
Sbjct: 327 CIVDLLSRAGELDRAKRFIELMPIKPDASVWGALLSACRNHSNLIMGKEVALKLFDLEPD 386

Query: 620 HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPE 679
           + G YVLL N+    G  ++A  VR+ M   GV+KEPGCSWI++ N  +VF V D +H +
Sbjct: 387 NPGNYVLLCNILTRNGMLNEADEVRRKMESIGVRKEPGCSWIDIKNSTYVFTVHDKSHEK 446

Query: 680 AQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGA 739
            + +Y+ LE+L   ++K GYV +T+F ++  E + KE +L  HSEK+A+AFGL+ LP GA
Sbjct: 447 TKEIYEMLEKLKELVKKKGYVAETEFAINTAE-EYKEQSLWYHSEKIALAFGLLSLPAGA 505

Query: 740 TVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            +R+ KNLR CGDCH   KF S++  REI+VRD  RFHHF +G CSCGDYW
Sbjct: 506 PIRIKKNLRTCGDCHTVMKFASEIFAREIIVRDINRFHHFTNGICSCGDYW 556



 Score =  105 bits (263), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 174/419 (41%), Gaps = 109/419 (26%)

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           MRR  V P+++TF++VLSA            QMH  V K G      V++AL+ +Y KC 
Sbjct: 1   MRRSGVYPNHYTFSAVLSACT-DTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCC 59

Query: 200 SSPFVSSRSLMGAARRVFDEMPE--------RDELSWTTMMTG----------------- 234
                     M  A +VF+EMP          DE+S++++ +                  
Sbjct: 60  D---------MLMAEKVFEEMPTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVA 110

Query: 235 ---------YVKND----------YLDAAREFLDGMSENVGVAWNALISGYVHRE----- 270
                    Y+ N           + D A+ F +  + +V V WN +I  YV+       
Sbjct: 111 LKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDV-VTWNIMIMAYVYNHNYEDA 169

Query: 271 -LKMLMLRIQ---LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                M+R +    DE +Y+SV+ +CAN      G  +H  ++R+        +L V ++
Sbjct: 170 CNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQIIRSGFVK----NLRVASS 225

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           L+T+Y KCG + +A  IF +  +R++V W AI++A                         
Sbjct: 226 LITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAA------------------------- 260

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG-----RQLH 441
                   Q+G+    ++LF QM  EG KP    F   +++C+  G +E G       + 
Sbjct: 261 ------CQQHGHANWVVELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIK 314

Query: 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
              ++ G++        ++ + +R G ++ A      MP   D+  W A+++A   H N
Sbjct: 315 VHGIYPGHEHYA----CIVDLLSRAGELDRAKRFIELMPIKPDASVWGALLSACRNHSN 369



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 161/391 (41%), Gaps = 79/391 (20%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF 73
           N Y     L    +   S     +H+ +   GF     +++ L+D+Y K   ++ A  +F
Sbjct: 9   NHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVF 68

Query: 74  DEIPQP--------DIVARTTLIAAYSASDNVKLARE----------------------M 103
           +E+P          D V+ +++ +A + + N++  ++                      M
Sbjct: 69  EEMPTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNLVYINNSLSDM 128

Query: 104 FNKTPL-----------KMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
           + K  L             RD V +N MI AY +N N   A   F  MRR    PD  ++
Sbjct: 129 YGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASY 188

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
           +SVL + A +    +  + +H  +++SG      V ++LI++Y KC S         +  
Sbjct: 189 SSVLHSCANLAALYQGTL-IHNQIIRSGFVKNLRVASSLITMYAKCGS---------LVD 238

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A ++F+E  +R+ + WT ++    ++ + +   E  +                      +
Sbjct: 239 AFQIFEETEDRNVVCWTAIIAACQQHGHANWVVELFE----------------------Q 276

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVTLY 331
           ML   I+ D  T+ SV+SAC+++G    G      +++     P  E        +V L 
Sbjct: 277 MLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYA----CIVDLL 332

Query: 332 WKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
            + G+++ A+     MP + D   W A+LSA
Sbjct: 333 SRAGELDRAKRFIELMPIKPDASVWGALLSA 363



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 8/115 (6%)

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
           MR  G  P  Y F+  +++C    A  +G Q+H+ +   G+ + +   +AL+ MYA+C  
Sbjct: 1   MRRSGVYPNHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCD 60

Query: 469 VEAANCVFNTMPN--------VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI 515
           +  A  VF  MP         +D VS++++ +A    GN     +++   LK G+
Sbjct: 61  MLMAEKVFEEMPTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGV 115


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 260/721 (36%), Positives = 376/721 (52%), Gaps = 84/721 (11%)

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR 142
           A   L++ Y+    V  A+ +F        D V +N M++    +     A++   DM  
Sbjct: 205 AFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVA 264

Query: 143 DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS-VLNALISVYVKCVSS 201
             V+PD  TF S L A + + E      +MH  V+K       S V +AL+ +Y      
Sbjct: 265 LGVRPDGVTFASALPACSRL-ELLDVGREMHAYVIKDDELAANSFVASALVDMY------ 317

Query: 202 PFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNA 261
              ++   +G AR+VFD +P                    D+ ++   GM       WNA
Sbjct: 318 ---ATHEQVGKARQVFDMVP--------------------DSGKQL--GM-------WNA 345

Query: 262 LISGYVH----RELKMLMLRIQLD------EFTYTSVISACANSGLFRLGKQVHAYLLRT 311
           +I GY       E   L  R++ +      E T  SV+ ACA S  F   + VH Y+++ 
Sbjct: 346 MICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVK- 404

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
                  F   V NAL+ +Y + GK + AR IF  +   D+VSWN +++  V  G + +A
Sbjct: 405 RGMAGNRF---VQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADA 461

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
              F+  RE   L               EEG          G  P        +  CA L
Sbjct: 462 ---FQLAREMQQL---------------EEG----------GVVPNAITLMTLLPGCAIL 493

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
            A   G+++H   V    D+ ++ G+AL+ MYA+CG +  +  VF+ +P  ++++WN +I
Sbjct: 494 AAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLI 553

Query: 492 AALGQHGNGARAIELYEQMLKEG-ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
            A G HG G  A  L+++M   G   P+ +TF+  L+AC+H+G+V  G + F  M   +G
Sbjct: 554 MAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHG 613

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF-KPSAPIWEALLAGCRIHGNIDLGIQA 609
           + P  D  A  +D+L RAG+  EA  ++ S+   +     W  +L  CR+H N+ LG  A
Sbjct: 614 VEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIA 673

Query: 610 AEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHV 669
            E+L +L P  A  YVLL N+Y+  G+W  AA VR  MR RGV KEPGCSWIEVD  +H 
Sbjct: 674 GERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHR 733

Query: 670 FLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVA 729
           F+  ++AHP ++ V+ ++E L  EM   GY PDT  VLHDM+   K   L  HSEKLA+A
Sbjct: 734 FMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIA 793

Query: 730 FGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
           FGL++   GAT+RV KNLR+C DCH A KF+SK+VGREIV+RD +RFHHFR+G+CSCGDY
Sbjct: 794 FGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDY 853

Query: 790 W 790
           W
Sbjct: 854 W 854



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 138/542 (25%), Positives = 232/542 (42%), Gaps = 90/542 (16%)

Query: 77  PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
           P P +     L+ AY+    +  A E+F        D V +N++I+A         A+  
Sbjct: 92  PSPAVA--NALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAA 149

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALI---VEEEKQCMQMHCTVVKSGT--GLFTSVLNAL 191
            R M        +FT  SVL A++ +       +   + H   +K+G   G      NAL
Sbjct: 150 LRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNAL 209

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVF-DEMPER-DELSWTTMMTGYVKNDYLDAAREFLD 249
           +S+Y +           L+  A+R+F    P R D ++W TM++  V++   D A + L 
Sbjct: 210 LSMYARL---------GLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTL- 259

Query: 250 GMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL 309
                                  M+ L ++ D  T+ S + AC+   L  +G+++HAY++
Sbjct: 260 ---------------------YDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVI 298

Query: 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--RDLVSWNAILSAYVSAGL 367
           + +      F   V +ALV +Y    +V +AR +F+ +P+  + L  WNA++  Y  AG+
Sbjct: 299 KDDELAANSF---VASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGM 355

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAIT 426
                                           EE L+LF++M  E GF PC+   A  + 
Sbjct: 356 -------------------------------DEEALRLFARMEAEAGFVPCETTMASVLP 384

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
           +CA   A      +H  +V  G   +    NAL+ MYAR G  + A  +F  +   D VS
Sbjct: 385 ACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVS 444

Query: 487 WNAMIAALGQHGNGARAIELYEQM--LKE-GILPDRITFLTVLSACNHAGLVKEGRRYFE 543
           WN +I      G+ A A +L  +M  L+E G++P+ IT +T+L  C        G+    
Sbjct: 445 WNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKE--- 501

Query: 544 TMHGPYGIPPGEDH----YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI 599
            +HG Y +    D      +  +D+  + G  + ++ V D LP + +   W  L+    +
Sbjct: 502 -IHG-YAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLP-RRNTITWNVLIMAYGM 558

Query: 600 HG 601
           HG
Sbjct: 559 HG 560



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 156/352 (44%), Gaps = 45/352 (12%)

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
           DE+     VA + L+  Y+  + V  AR++F+  P   +    +NAMI  Y+       A
Sbjct: 301 DELAANSFVA-SALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEA 359

Query: 134 IELFRDMRRD-DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           + LF  M  +    P   T  SVL A A   E       +H  VVK G      V NAL+
Sbjct: 360 LRLFARMEAEAGFVPCETTMASVLPACAR-SEAFAGKEAVHGYVVKRGMAGNRFVQNALM 418

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
            +Y +   +           ARR+F  +   D +SW T++TG V   ++  A +    M 
Sbjct: 419 DMYARLGKTDV---------ARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQ 469

Query: 253 --ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
             E  GV  NA+                     T  +++  CA       GK++H Y +R
Sbjct: 470 QLEEGGVVPNAI---------------------TLMTLLPGCAILAAPARGKEIHGYAVR 508

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
                  +  + V +ALV +Y KCG +  +R +F+++P R+ ++WN ++ AY   GL  E
Sbjct: 509 H----ALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGE 564

Query: 371 AKSLFEAMRER-----NLLSWTVMISGLAQNGYGEEGLKLFSQM-RLEGFKP 416
           A  LF+ M        N +++   ++  + +G  + GL+LF  M R  G +P
Sbjct: 565 ATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEP 616



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 135/333 (40%), Gaps = 76/333 (22%)

Query: 36  SVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY---- 91
           +VH +++  G      + N L+D+Y +  K   AR +F  +  PD+V+  TLI       
Sbjct: 397 AVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQG 456

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
             +D  +LAREM                                  + +    V P+  T
Sbjct: 457 HVADAFQLAREM----------------------------------QQLEEGGVVPNAIT 482

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             ++L   A++    +   ++H   V+       +V +AL+ +Y KC           + 
Sbjct: 483 LMTLLPGCAILAAPARG-KEIHGYAVRHALDTDVAVGSALVDMYAKC---------GCLA 532

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            +R VFD +P R+ ++W  ++  Y  +     A    D M+           SG      
Sbjct: 533 LSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTA----------SG------ 576

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQV-HAYLLRTEAKPTPEFSLPVNNALVTL 330
                  + +E T+ + ++AC++SG+   G Q+ HA       +PTP+    +   +V +
Sbjct: 577 -----EARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPD----ILACVVDI 627

Query: 331 YWKCGKVNEARDIFNQMP--ERDLVSWNAILSA 361
             + G+++EA  +   M   E+ + +W+ +L A
Sbjct: 628 LGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGA 660



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 116/285 (40%), Gaps = 59/285 (20%)

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSG--YDSSLSAGNALITMYARCGVVEAANCVFN 477
           A   AI S A L    + R +HA  +  G  +  S +  NAL+T YARCG + AA  VF 
Sbjct: 59  ALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFG 118

Query: 478 TMPNV--DSVSWNAMIAAL------------------GQH-----------------GNG 500
           ++ +   D+VS+N++I+AL                  G H                    
Sbjct: 119 SISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAA 178

Query: 501 ARAIELYEQ----MLKEGIL--PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
           A A+ L  +     LK G+L    R  F  +LS     GLV + +R F       G  PG
Sbjct: 179 AAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFA------GATPG 232

Query: 555 EDH---YARFIDLLCRAGKFSEAKDVI---DSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
                 +   + +L ++G F EA   +    +L  +P    + + L  C     +D+G +
Sbjct: 233 RGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGRE 292

Query: 609 AAEQLFQLMPHHAGTYV--LLSNMYANLGRWDDAARVRKLMRDRG 651
               + +     A ++V   L +MYA   +   A +V  ++ D G
Sbjct: 293 MHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSG 337



 Score = 42.0 bits (97), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 6/141 (4%)

Query: 25  PRNPITSSLARS--VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIV 82
           P   I ++ AR   +H + +         + + L+D+Y K   L  +R +FD +P+ + +
Sbjct: 488 PGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTI 547

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMR---DTVFYNAMITAYSHNSNGHAAIELFRD 139
               LI AY        A  +F++         + V + A + A SH+      ++LF  
Sbjct: 548 TWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHA 607

Query: 140 MRRD-DVKPDNFTFTSVLSAL 159
           M RD  V+P       V+  L
Sbjct: 608 MERDHGVEPTPDILACVVDIL 628


>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
 gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 938

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 241/714 (33%), Positives = 380/714 (53%), Gaps = 69/714 (9%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + +I    TL++ YS +   K A  +F + P   RD + +N+M+  Y  +     A+++F
Sbjct: 293 ESNICLCNTLLSVYSDAGRSKDAELIFRRMP--ERDLISWNSMLACYVQDGRCLCALKVF 350

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
            +M     + +  TFTS L+A  L  E       +H  VV  G      + N LI+ Y K
Sbjct: 351 AEMLWMKKEINYVTFTSALAA-CLDPEFFTNGKILHGFVVVLGLQDELIIGNTLITFYGK 409

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C           M  A++VF  MP+ D+++W  ++ G+  N  L+ A      M E    
Sbjct: 410 CHK---------MAEAKKVFQRMPKLDKVTWNALIGGFANNAELNEAVAAFKLMREGS-- 458

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISAC-ANSGLFRLGKQVHAYLLRTEAKPT 316
                 SG              +D  T  +++ +C  +  L + G  +HA+ + T     
Sbjct: 459 -----TSG--------------VDYITIVNILGSCLTHEDLIKYGIPIHAHTVVTGF--- 496

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
            +    V ++L+T+Y KCG ++ +  IF+Q+  +    WNAI++A               
Sbjct: 497 -DLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAAN-------------- 541

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
                            A+ G+GEE LKL  +MR  G +   + F+ A++  A L  LE 
Sbjct: 542 -----------------ARYGFGEEALKLVVRMRSAGIEFDQFNFSTALSVAADLAMLEE 584

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           G+QLH   +  G++      NA + MY +CG ++ A  +     +   +SWN +I+   +
Sbjct: 585 GQQLHGSTIKLGFELDHFIINAAMDMYGKCGELDDALRILPQPTDRSRLSWNTLISISAR 644

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
           HG   +A E +  MLK G+ P+ ++F+ +LSAC+H GLV EG  Y+ +M   YGI PG +
Sbjct: 645 HGQFHKAKETFHDMLKLGVKPNHVSFVCLLSACSHGGLVDEGLAYYASMTSVYGIQPGIE 704

Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
           H    IDLL R+G+  EA+  I  +P  P+  +W +LLA CRI+ N+DLG +AA+ L +L
Sbjct: 705 HCVCMIDLLGRSGRLVEAEAFITEMPIPPNDLVWRSLLASCRIYRNLDLGRKAAKHLLEL 764

Query: 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTA 676
            P     YVL SN++A +GRW+D   VR  M    ++K+P  SW++    + +F + D  
Sbjct: 765 DPSDDSAYVLYSNVFATIGRWEDVEDVRGQMGAHKIQKKPAHSWVKWKGNISIFGMGDQT 824

Query: 677 HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLP 736
           HP+ + +   L  L+  + + GYVPDT + L D + +QKE+ + +HSE++A+AFGL+ +P
Sbjct: 825 HPQMEQINGKLLGLMKIVGEAGYVPDTSYSLQDTDEEQKEHNMWSHSERIALAFGLINIP 884

Query: 737 GGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            G+TVR+ KNLR+CGDCH+ FKF+S V+GR+IV+RD  RFHHF +G CSC DYW
Sbjct: 885 EGSTVRIFKNLRVCGDCHSFFKFVSGVLGRKIVLRDPYRFHHFTNGNCSCSDYW 938



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 134/530 (25%), Positives = 226/530 (42%), Gaps = 80/530 (15%)

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
           YS    +  A+ +F++  +  R+   +N M++ Y    +   A+  FRD+    +KP  F
Sbjct: 2   YSKFGRINYAQLVFDR--MSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGF 59

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
              S+++A        K+  Q H   +K G          +  V+V      F +S  ++
Sbjct: 60  MIASLVTACNKSSIMAKEGFQFHGFAIKCGL---------IYDVFVGTSFVHFYASYGIV 110

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
             A+++F+EMP+R+ +SWT++M  Y  N           G  + V           ++  
Sbjct: 111 SNAQKMFNEMPDRNVVSWTSLMVSYSDN-----------GSKKEV-----------INTY 148

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
            +M    I  +E     VIS+C       LG Q    LL    K   E  +   N+L+ +
Sbjct: 149 KRMRHEGICCNENNIALVISSCGFLMDIILGHQ----LLGHALKFGLETKVSAANSLIFM 204

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           +  CG +NEA  IFN+M ERD +SWN+I+SA                             
Sbjct: 205 FGGCGDINEACSIFNEMNERDTISWNSIISAN---------------------------- 236

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
              AQN   EE  + F  MRL   +      +  ++ C  +  L+ G+ +H   V  G +
Sbjct: 237 ---AQNTLHEESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLE 293

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
           S++   N L+++Y+  G  + A  +F  MP  D +SWN+M+A   Q G    A++++ +M
Sbjct: 294 SNICLCNTLLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEM 353

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA---RFIDLLCR 567
           L      + +TF + L+AC        G+     +HG   +   +D        I    +
Sbjct: 354 LWMKKEINYVTFTSALAACLDPEFFTNGK----ILHGFVVVLGLQDELIIGNTLITFYGK 409

Query: 568 AGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
             K +EAK V   +P K     W AL+ G   +  ++  + A    F+LM
Sbjct: 410 CHKMAEAKKVFQRMP-KLDKVTWNALIGGFANNAELNEAVAA----FKLM 454



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 32/201 (15%)

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           +Y K G++N A+ +F++M ER+  SWN ++S YV  G   EA   F              
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRD------------ 48

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL-ENGRQLHAQLVHSG 448
           I G+                   G KP  +  A  +T+C     + + G Q H   +  G
Sbjct: 49  ICGI-------------------GIKPSGFMIASLVTACNKSSIMAKEGFQFHGFAIKCG 89

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
               +  G + +  YA  G+V  A  +FN MP+ + VSW +++ +   +G+    I  Y+
Sbjct: 90  LIYDVFVGTSFVHFYASYGIVSNAQKMFNEMPDRNVVSWTSLMVSYSDNGSKKEVINTYK 149

Query: 509 QMLKEGILPDRITFLTVLSAC 529
           +M  EGI  +      V+S+C
Sbjct: 150 RMRHEGICCNENNIALVISSC 170



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 11/138 (7%)

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           MY++ G +  A  VF+ M   +  SWN M++   + G+   A+  +  +   GI P    
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFM 60

Query: 522 FLTVLSACNHAGLV-KEGRRYFETMHGPYGIPPG--EDHY--ARFIDLLCRAGKFSEAKD 576
             ++++ACN + ++ KEG ++    HG + I  G   D +    F+      G  S A+ 
Sbjct: 61  IASLVTACNKSSIMAKEGFQF----HG-FAIKCGLIYDVFVGTSFVHFYASYGIVSNAQK 115

Query: 577 VIDSLPFKPSAPIWEALL 594
           + + +P +     W +L+
Sbjct: 116 MFNEMPDRNVVS-WTSLM 132


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/630 (35%), Positives = 347/630 (55%), Gaps = 43/630 (6%)

Query: 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVK--CVSSPFVSSRSLMGAARRVFDEMPERDE 225
           Q  Q+H  V++ G      +L  LI    K      P+         ARRV + +  R+ 
Sbjct: 64  QIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPY---------ARRVIEPVQFRNP 114

Query: 226 LSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTY 285
             WT ++ GY      D A                  + G + +E       I    FT+
Sbjct: 115 FLWTAVIRGYAIEGKFDEA----------------IAMYGCMRKE------EITPVSFTF 152

Query: 286 TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP-VNNALVTLYWKCGKVNEARDIF 344
           ++++ AC       LG+Q HA   R        F    V N ++ +Y KC  ++ AR +F
Sbjct: 153 SALLKACGTMKDLNLGRQFHAQTFRLRG-----FCFVYVGNTMIDMYVKCESIDCARKVF 207

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           ++MPERD++SW  +++AY   G ++ A  LFE++  +++++WT M++G AQN   +E L+
Sbjct: 208 DEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALE 267

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS--LSAGNALITM 462
            F +M   G +  +   AG I++CA LGA +   +       SGY  S  +  G+ALI M
Sbjct: 268 YFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDM 327

Query: 463 YARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG-ILPDRIT 521
           Y++CG VE A  VF +M N +  ++++MI  L  HG    A+ L+  M+ +  I P+ +T
Sbjct: 328 YSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVT 387

Query: 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581
           F+  L AC+H+GLV +GR+ F++M+  +G+ P  DHY   +DLL R G+  EA ++I ++
Sbjct: 388 FVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTM 447

Query: 582 PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAA 641
             +P   +W ALL  CRIH N ++   AAE LF+L P   G Y+LLSN+YA+ G W    
Sbjct: 448 SVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVL 507

Query: 642 RVRKLMRDRGVKKEPGCSW-IEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYV 700
           RVRKL++++G+KK P  SW ++ + ++H F   +  HP +  +   LE+LV  +  LGY 
Sbjct: 508 RVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQ 567

Query: 701 PDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFM 760
           PD   V +D+  + K   L  H+EKLA+AF L+     +T+ ++KNLR+C DCH   +  
Sbjct: 568 PDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLA 627

Query: 761 SKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           S+V G+ I++RD  RFHHFR G CSCGD+W
Sbjct: 628 SEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 131/528 (24%), Positives = 222/528 (42%), Gaps = 93/528 (17%)

Query: 12  LANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYART 71
           L +   S+L  C   N I     + +H H++  G     +I+ +LI            RT
Sbjct: 48  LVSSLISKLDDCINLNQI-----KQIHGHVLRKGLDQSCYILTKLI------------RT 90

Query: 72  LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           L       D  AR  +                    P++ R+   + A+I  Y+      
Sbjct: 91  LTKLGVPMDPYARRVI-------------------EPVQFRNPFLWTAVIRGYAIEGKFD 131

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
            AI ++  MR++++ P +FTF+++L A   + ++     Q H    +     F  V N +
Sbjct: 132 EAIAMYGCMRKEEITPVSFTFSALLKACGTM-KDLNLGRQFHAQTFRLRGFCFVYVGNTM 190

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           I +YVKC S         +  AR+VFDEMPERD +SWT ++  Y +   ++ A E  + +
Sbjct: 191 IDMYVKCES---------IDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESL 241

Query: 252 SENVGVAWNALISGYVHRELKMLMLR---------IQLDEFTYTSVISACANSGLFRLGK 302
                VAW A+++G+         L          I+ DE T    ISACA  G  +   
Sbjct: 242 PTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYAD 301

Query: 303 QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY 362
           +  A  +  ++  +P   + + +AL+ +Y KCG V EA ++F  M  +++ ++++     
Sbjct: 302 R--AVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSS----- 354

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG-FKPCDYAF 421
                                     MI GLA +G  +E L LF  M  +   KP    F
Sbjct: 355 --------------------------MILGLATHGRAQEALHLFHYMVTQTEIKPNTVTF 388

Query: 422 AGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
            GA+ +C+  G ++ GRQ+   +  + G   +      ++ +  R G ++ A  +  TM 
Sbjct: 389 VGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMS 448

Query: 481 -NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
                  W A++ A   H N   A E+  + L E + PD I    +LS
Sbjct: 449 VEPHGGVWGALLGACRIHNNPEIA-EIAAEHLFE-LEPDIIGNYILLS 494


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 264/785 (33%), Positives = 385/785 (49%), Gaps = 109/785 (13%)

Query: 9   IRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVY 68
           IR     + S L+ C   + I     + +HAH+I  GF+    + N LI +Y K      
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIAR--GKEIHAHVIRFGFESDVDVGNALITMYVKC----- 246

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
                                      ++  AR +F+K P   RD + +NAMI+ Y  N 
Sbjct: 247 --------------------------GDISNARMLFDKMP--KRDRISWNAMISGYFENG 278

Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL 188
            G   +ELF  MR   V PD  T T+V SA  L+ + E+    +H  VVKS  G   S+ 
Sbjct: 279 GGLEGLELFSMMRELSVDPDLITMTTVASACELL-DNERLGRGVHGYVVKSEFGGDISMN 337

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           N+LI +Y         SS   +  A  VF  M  +D +SWT M+   V +     A E  
Sbjct: 338 NSLIQMY---------SSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVE-- 386

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLR-IQLDEFTYTSVISACANSGLFRLGKQVHAY 307
                                  KM+ L  I  DE T  SV+SACA  G   LG ++H  
Sbjct: 387 ---------------------TYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEI 425

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367
            ++T         + V+N+L+ +Y KC                                 
Sbjct: 426 AIKTGLVS----HVIVSNSLIDMYSKCK-------------------------------C 450

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
           +D A  +F  +  +N++SWT +I GL  N    E L  F QM+ E  KP        +++
Sbjct: 451 VDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMK-ESMKPNSVTLISVLSA 509

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
           CA +GAL  G+++HA  + +G        NA++ MY RCG    A   FN+    D  +W
Sbjct: 510 CARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQKK-DVTAW 568

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
           N ++    Q G    A+EL+++ML+  I PD ITF+++L AC+ +G+V EG  YF  M  
Sbjct: 569 NILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKN 628

Query: 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
            Y + P   HYA  +D+L RAG+  +A D I  +P +P A IW ALL  CRIH N++LG 
Sbjct: 629 KYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGE 688

Query: 608 QAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKV 667
            AA+++F+      G Y+LL N+YA  G WD  ++VR LMR+RG+  +PGCSW+E+  KV
Sbjct: 689 IAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKV 748

Query: 668 HVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLA 727
           H FL  D +H +++ +   L+    +M++ G+         ++ES + +     HSE+ A
Sbjct: 749 HAFLSGDNSHSQSKEINGVLDGFCSKMKENGFGNLKSSFTSEIESSRADI-FCGHSERQA 807

Query: 728 VAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCG 787
           +AFGL+    G  + V KNL +C  CHN  KF+S +V REI VRD + +HHF+DG CSCG
Sbjct: 808 IAFGLINTAPGMPIWVXKNLYMCHSCHNMVKFISTIVRREISVRDVEEYHHFKDGVCSCG 867

Query: 788 D--YW 790
           D  YW
Sbjct: 868 DEGYW 872



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 138/512 (26%), Positives = 231/512 (45%), Gaps = 79/512 (15%)

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ 171
           RD   +N ++  Y+       A+ L+  M   +++P+ +TF SVL   A  V +  +  +
Sbjct: 161 RDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAG-VSDIARGKE 219

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H  V++ G      V NALI++YVKC           +  AR +FD+MP+RD +SW  M
Sbjct: 220 IHAHVIRFGFESDVDVGNALITMYVKCGD---------ISNARMLFDKMPKRDRISWNAM 270

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           ++GY +N       E    M E                      L +  D  T T+V SA
Sbjct: 271 ISGYFENGGGLEGLELFSMMRE----------------------LSVDPDLITMTTVASA 308

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           C      RLG+ VH Y++++E        + +NN+L+ +Y   G++ EA  +F++M  +D
Sbjct: 309 CELLDNERLGRGVHGYVVKSEFGG----DISMNNSLIQMYSSLGRLEEAETVFSRMESKD 364

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
           +VSW A++++ VS  L  +A                               ++ +  M L
Sbjct: 365 VVSWTAMIASLVSHKLPFKA-------------------------------VETYKMMEL 393

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
           EG  P +      +++CA +G L+ G +LH   + +G  S +   N+LI MY++C  V+ 
Sbjct: 394 EGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDN 453

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
           A  VF  +   + VSW ++I  L  +     A+  + QM KE + P+ +T ++VLSAC  
Sbjct: 454 ALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM-KESMKPNSVTLISVLSACAR 512

Query: 532 AGLVKEGRRY----FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSA 587
            G +  G+        T  G  G  P        +D+  R G+   A +  +S   K   
Sbjct: 513 IGALMRGKEIHAHALRTGVGFDGFLPNA-----ILDMYVRCGRKVPALNQFNSQ--KKDV 565

Query: 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
             W  LL G    G   L ++  +++ +L  H
Sbjct: 566 TAWNILLTGYAQQGQAKLAVELFDKMLELEIH 597



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 141/477 (29%), Positives = 211/477 (44%), Gaps = 77/477 (16%)

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
           V  S + L   + NAL+S++V+  +         +  A  VF +M ERD  SW  ++ GY
Sbjct: 123 VSSSKSCLCVRLGNALLSMFVRFGN---------LLDAWYVFGKMSERDVFSWNVLVGGY 173

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
            K    D A                       HR   ML   I+ + +T+ SV+  CA  
Sbjct: 174 AKAGCFDEALNLY-------------------HR---MLWAEIRPNVYTFPSVLKTCAGV 211

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
                GK++HA+++R        F                             E D+   
Sbjct: 212 SDIARGKEIHAHVIR--------FGF---------------------------ESDVDVG 236

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           NA+++ YV  G I  A+ LF+ M +R+ +SW  MISG  +NG G EGL+LFS MR     
Sbjct: 237 NALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVD 296

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P         ++C  L     GR +H  +V S +   +S  N+LI MY+  G +E A  V
Sbjct: 297 PDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETV 356

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           F+ M + D VSW AMIA+L  H    +A+E Y+ M  EGILPD IT ++VLSAC   G +
Sbjct: 357 FSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHL 416

Query: 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
             G R  E +    G+          ID+  +      A +V  ++  K     W +L+ 
Sbjct: 417 DLGIRLHE-IAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVS-WTSLIL 474

Query: 596 GCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           G RI+      +    Q+ + M  ++ T  L+S + A        AR+  LMR + +
Sbjct: 475 GLRINNRSFEALLFFRQMKESMKPNSVT--LISVLSA-------CARIGALMRGKEI 522



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/419 (27%), Positives = 190/419 (45%), Gaps = 79/419 (18%)

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           ML LRI+++E  Y +++  C        G +V  Y L + +K      + + NAL++++ 
Sbjct: 88  MLELRIEVEEDAYIALLRLCEWRRAPDEGSRV--YELVSSSKSC--LCVRLGNALLSMFV 143

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           + G + +A  +F +M ERD+ SWN ++  Y  AG  DEA +L+  M              
Sbjct: 144 RFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRM-------------- 189

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
                       L++++R     P  Y F   + +CAG+  +  G+++HA ++  G++S 
Sbjct: 190 ------------LWAEIR-----PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESD 232

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           +  GNALITMY +CG +  A  +F+ MP  D +SWNAMI+   ++G G   +EL+  M +
Sbjct: 233 VDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRE 292

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP--GED--HYARFIDLLCRA 568
             + PD IT  TV SAC     + +  R    +HG Y +    G D       I +    
Sbjct: 293 LSVDPDLITMTTVASACE----LLDNERLGRGVHG-YVVKSEFGGDISMNNSLIQMYSSL 347

Query: 569 GKFSEA---------KDVID-----------SLPFK--------------PSAPIWEALL 594
           G+  EA         KDV+             LPFK              P      ++L
Sbjct: 348 GRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVL 407

Query: 595 AGCRIHGNIDLGIQAAEQLFQL-MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           + C   G++DLGI+  E   +  +  H      L +MY+     D+A  V + +  + V
Sbjct: 408 SACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNV 466



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 111/261 (42%), Gaps = 20/261 (7%)

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
           +++ A VS   ID+ ++L   +RE            L   G  E+ +K    M     + 
Sbjct: 50  SVVGAAVSHSAIDQTQNL--ELRE------------LCLQGNLEQAMKRLESMLELRIEV 95

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
            + A+   +  C    A + G +++  +  S     +  GNAL++M+ R G +  A  VF
Sbjct: 96  EEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVF 155

Query: 477 NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536
             M   D  SWN ++    + G    A+ LY +ML   I P+  TF +VL  C     + 
Sbjct: 156 GKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIA 215

Query: 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
            G+     +   +G     D     I +  + G  S A+ + D +P K     W A+++G
Sbjct: 216 RGKEIHAHVI-RFGFESDVDVGNALITMYVKCGDISNARMLFDKMP-KRDRISWNAMISG 273

Query: 597 CRIHGNIDLGIQAAEQLFQLM 617
              +G    G++  E LF +M
Sbjct: 274 YFENGG---GLEGLE-LFSMM 290


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 264/785 (33%), Positives = 385/785 (49%), Gaps = 109/785 (13%)

Query: 9   IRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVY 68
           IR     + S L+ C   + I     + +HAH+I  GF+    + N LI +Y K      
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIAR--GKEIHAHVIRFGFESDVDVGNALITMYVKC----- 246

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
                                      ++  AR +F+K P   RD + +NAMI+ Y  N 
Sbjct: 247 --------------------------GDISNARMLFDKMP--KRDRISWNAMISGYFENG 278

Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL 188
            G   +ELF  MR   V PD  T T+V SA  L+ + E+    +H  VVKS  G   S+ 
Sbjct: 279 GGLEGLELFSMMRELSVDPDLITMTTVASACELL-DNERLGRGVHGYVVKSEFGGDISMN 337

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           N+LI +Y         SS   +  A  VF  M  +D +SWT M+   V +     A E  
Sbjct: 338 NSLIQMY---------SSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVE-- 386

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLR-IQLDEFTYTSVISACANSGLFRLGKQVHAY 307
                                  KM+ L  I  DE T  SV+SACA  G   LG ++H  
Sbjct: 387 ---------------------TYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEI 425

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367
            ++T         + V+N+L+ +Y KC                                 
Sbjct: 426 AIKTGLVS----HVIVSNSLIDMYSKCK-------------------------------C 450

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
           +D A  +F  +  +N++SWT +I GL  N    E L  F QM+ E  KP        +++
Sbjct: 451 VDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMK-ESMKPNSVTLISVLSA 509

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
           CA +GAL  G+++HA  + +G        NA++ MY RCG    A   FN+    D  +W
Sbjct: 510 CARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQKK-DVTAW 568

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
           N ++    Q G    A+EL+++ML+  I PD ITF+++L AC+ +G+V EG  YF  M  
Sbjct: 569 NILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKN 628

Query: 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
            Y + P   HYA  +D+L RAG+  +A D I  +P +P A IW ALL  CRIH N++LG 
Sbjct: 629 KYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGE 688

Query: 608 QAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKV 667
            AA+++F+      G Y+LL N+YA  G WD  ++VR LMR+RG+  +PGCSW+E+  KV
Sbjct: 689 IAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKV 748

Query: 668 HVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLA 727
           H FL  D +H +++ +   L+    +M++ G+         ++ES + +     HSE+ A
Sbjct: 749 HAFLSGDNSHSQSKEINGVLDGFCSKMKENGFGNLKSSFTSEIESSRADI-FCGHSERQA 807

Query: 728 VAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCG 787
           +AFGL+    G  + V KNL +C  CHN  KF+S +V REI VRD + +HHF+DG CSCG
Sbjct: 808 IAFGLINTAPGMPIWVTKNLYMCHSCHNMVKFISTIVRREISVRDVEEYHHFKDGVCSCG 867

Query: 788 D--YW 790
           D  YW
Sbjct: 868 DEGYW 872



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 138/512 (26%), Positives = 231/512 (45%), Gaps = 79/512 (15%)

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ 171
           RD   +N ++  Y+       A+ L+  M   +++P+ +TF SVL   A  V +  +  +
Sbjct: 161 RDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAG-VSDIARGKE 219

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H  V++ G      V NALI++YVKC           +  AR +FD+MP+RD +SW  M
Sbjct: 220 IHAHVIRFGFESDVDVGNALITMYVKCGD---------ISNARMLFDKMPKRDRISWNAM 270

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           ++GY +N       E    M E                      L +  D  T T+V SA
Sbjct: 271 ISGYFENGGGLEGLELFSMMRE----------------------LSVDPDLITMTTVASA 308

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           C      RLG+ VH Y++++E        + +NN+L+ +Y   G++ EA  +F++M  +D
Sbjct: 309 CELLDNERLGRGVHGYVVKSEFGG----DISMNNSLIQMYSSLGRLEEAETVFSRMESKD 364

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
           +VSW A++++ VS  L  +A                               ++ +  M L
Sbjct: 365 VVSWTAMIASLVSHKLPFKA-------------------------------VETYKMMEL 393

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
           EG  P +      +++CA +G L+ G +LH   + +G  S +   N+LI MY++C  V+ 
Sbjct: 394 EGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDN 453

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
           A  VF  +   + VSW ++I  L  +     A+  + QM KE + P+ +T ++VLSAC  
Sbjct: 454 ALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM-KESMKPNSVTLISVLSACAR 512

Query: 532 AGLVKEGRRY----FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSA 587
            G +  G+        T  G  G  P        +D+  R G+   A +  +S   K   
Sbjct: 513 IGALMRGKEIHAHALRTGVGFDGFLPNA-----ILDMYVRCGRKVPALNQFNSQ--KKDV 565

Query: 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
             W  LL G    G   L ++  +++ +L  H
Sbjct: 566 TAWNILLTGYAQQGQAKLAVELFDKMLELEIH 597



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 141/477 (29%), Positives = 211/477 (44%), Gaps = 77/477 (16%)

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
           V  S + L   + NAL+S++V+  +         +  A  VF +M ERD  SW  ++ GY
Sbjct: 123 VSSSKSCLCVRLGNALLSMFVRFGN---------LLDAWYVFGKMSERDVFSWNVLVGGY 173

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
            K    D A                       HR   ML   I+ + +T+ SV+  CA  
Sbjct: 174 AKAGCFDEALNLY-------------------HR---MLWAEIRPNVYTFPSVLKTCAGV 211

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
                GK++HA+++R        F                             E D+   
Sbjct: 212 SDIARGKEIHAHVIR--------FGF---------------------------ESDVDVG 236

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           NA+++ YV  G I  A+ LF+ M +R+ +SW  MISG  +NG G EGL+LFS MR     
Sbjct: 237 NALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVD 296

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P         ++C  L     GR +H  +V S +   +S  N+LI MY+  G +E A  V
Sbjct: 297 PDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETV 356

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           F+ M + D VSW AMIA+L  H    +A+E Y+ M  EGILPD IT ++VLSAC   G +
Sbjct: 357 FSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHL 416

Query: 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
             G R  E +    G+          ID+  +      A +V  ++  K     W +L+ 
Sbjct: 417 DLGIRLHE-IAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVS-WTSLIL 474

Query: 596 GCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           G RI+      +    Q+ + M  ++ T  L+S + A        AR+  LMR + +
Sbjct: 475 GLRINNRSFEALLFFRQMKESMKPNSVT--LISVLSA-------CARIGALMRGKEI 522



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/419 (27%), Positives = 190/419 (45%), Gaps = 79/419 (18%)

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           ML LRI+++E  Y +++  C        G +V  Y L + +K      + + NAL++++ 
Sbjct: 88  MLELRIEVEEDAYIALLRLCEWRRAPDEGSRV--YELVSSSKSC--LCVRLGNALLSMFV 143

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           + G + +A  +F +M ERD+ SWN ++  Y  AG  DEA +L+  M              
Sbjct: 144 RFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRM-------------- 189

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
                       L++++R     P  Y F   + +CAG+  +  G+++HA ++  G++S 
Sbjct: 190 ------------LWAEIR-----PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESD 232

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           +  GNALITMY +CG +  A  +F+ MP  D +SWNAMI+   ++G G   +EL+  M +
Sbjct: 233 VDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRE 292

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP--GED--HYARFIDLLCRA 568
             + PD IT  TV SAC     + +  R    +HG Y +    G D       I +    
Sbjct: 293 LSVDPDLITMTTVASACE----LLDNERLGRGVHG-YVVKSEFGGDISMNNSLIQMYSSL 347

Query: 569 GKFSEA---------KDVID-----------SLPFK--------------PSAPIWEALL 594
           G+  EA         KDV+             LPFK              P      ++L
Sbjct: 348 GRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVL 407

Query: 595 AGCRIHGNIDLGIQAAEQLFQL-MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           + C   G++DLGI+  E   +  +  H      L +MY+     D+A  V + +  + V
Sbjct: 408 SACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNV 466



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 111/261 (42%), Gaps = 20/261 (7%)

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
           +++ A VS   ID+ ++L   +RE            L   G  E+ +K    M     + 
Sbjct: 50  SVVGAAVSHSAIDQTQNL--ELRE------------LCLQGNLEQAMKRLESMLELRIEV 95

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
            + A+   +  C    A + G +++  +  S     +  GNAL++M+ R G +  A  VF
Sbjct: 96  EEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVF 155

Query: 477 NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536
             M   D  SWN ++    + G    A+ LY +ML   I P+  TF +VL  C     + 
Sbjct: 156 GKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIA 215

Query: 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
            G+     +   +G     D     I +  + G  S A+ + D +P K     W A+++G
Sbjct: 216 RGKEIHAHVI-RFGFESDVDVGNALITMYVKCGDISNARMLFDKMP-KRDRISWNAMISG 273

Query: 597 CRIHGNIDLGIQAAEQLFQLM 617
              +G    G++  E LF +M
Sbjct: 274 YFENGG---GLEGLE-LFSMM 290


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/625 (36%), Positives = 348/625 (55%), Gaps = 67/625 (10%)

Query: 167 KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDEL 226
           +   Q+H  ++ SG     S+L  LIS+     S  +         ARR+F  +P  D  
Sbjct: 105 RNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITY---------ARRLFPTVPNPDSF 155

Query: 227 SWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYT 286
            + +++                  ++   G + + ++    +R  +ML        +T+T
Sbjct: 156 LFDSLLK-----------------VTSKFGFSIDTVL---FYR--RMLFSGAPQSNYTFT 193

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
           SVI ACA+    RLGK++H++++                        CG      D++ Q
Sbjct: 194 SVIKACADLSALRLGKEIHSHVM-----------------------VCGY---GSDMYVQ 227

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
                     A+++ Y  A  +  AK +F+AM +R +++W  +ISG  QNG  +E + LF
Sbjct: 228 A---------ALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLF 278

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
             M   GF+P        ++SC+ LGAL+ G  LH     +G+D ++  G +LI MY RC
Sbjct: 279 HLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRC 338

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G V  A  VF++M   + V+W AMI+  G HG G +A+EL+ +M   G  P+ ITF+ VL
Sbjct: 339 GNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVL 398

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS-LPFKP 585
           SAC H+GL+ +GRR F +M   YG+ PG +H    +D+  RAG  ++A   I   +P +P
Sbjct: 399 SACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEP 458

Query: 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645
              +W ++L  CR+H N DLG++ AE +  + P + G YV+LSN+YA  GR D    VR 
Sbjct: 459 GPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRN 518

Query: 646 LMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKF 705
           +M  R +KK+ G S IE++ K ++F + D +HP+   +Y+YL++L+    + GYVP  + 
Sbjct: 519 MMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPES 578

Query: 706 VLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVG 765
           ++HD+E ++++YAL  HSEKLA+AFGL+K   G T+R++KNLRIC DCH+A K +S +  
Sbjct: 579 LMHDLEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIAD 638

Query: 766 REIVVRDGKRFHHFRDGKCSCGDYW 790
           REI+VRD  RFHHF+DG CSC DYW
Sbjct: 639 REIIVRDKFRFHHFKDGSCSCLDYW 663



 Score =  149 bits (375), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 118/497 (23%), Positives = 218/497 (43%), Gaps = 112/497 (22%)

Query: 27  NPITSSLARS---------VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP 77
           +P+  +L RS         VHAH+I SG      ++ +LI + C +  + YAR LF  +P
Sbjct: 91  SPVHEALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVP 150

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
            PD     +L+   S             K    +   +FY  M+ + +  S         
Sbjct: 151 NPDSFLFDSLLKVTS-------------KFGFSIDTVLFYRRMLFSGAPQS--------- 188

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
                      N+TFTSV+ A A +    +   ++H  V+  G G    V  ALI++Y K
Sbjct: 189 -----------NYTFTSVIKACADL-SALRLGKEIHSHVMVCGYGSDMYVQAALIALYAK 236

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
                     S M  A++VFD MP+R  ++W ++++GY +N              E++G+
Sbjct: 237 A---------SDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGL----------PQESIGL 277

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
               + SG+            Q D  T  S++S+C+  G    G  +H Y          
Sbjct: 278 FHLMMESGF------------QPDSATIVSLLSSCSQLGALDFGCWLHDY----ADGNGF 321

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
           + ++ +  +L+ +Y +CG V++AR++F+ M ER++V+W A++S Y               
Sbjct: 322 DLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGY--------------- 366

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
                             +GYG + ++LF++MR  G +P +  F   +++CA  G +++G
Sbjct: 367 ----------------GMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDG 410

Query: 438 RQLHAQLVHS-GYDSSLSAGNALITMYARCGVV-EAANCVFNTMPNVDSVS-WNAMIAAL 494
           R++ + +  + G    +     ++ M+ R G++ +A   +   +P     + W +M+ A 
Sbjct: 411 RRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGAC 470

Query: 495 GQHGNGARAIELYEQML 511
             H N    +++ E +L
Sbjct: 471 RMHRNFDLGVKVAEHVL 487



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 135/320 (42%), Gaps = 64/320 (20%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+  +  LIA Y+ + ++K+A+++F+  P   R  + +N++I+ Y  N     +I LF  
Sbjct: 223 DMYVQAALIALYAKASDMKVAKKVFDAMP--QRTIIAWNSLISGYDQNGLPQESIGLFHL 280

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M     +PD+ T  S+LS+ + +   +  C  +H     +G  L   +  +LI++Y +C 
Sbjct: 281 MMESGFQPDSATIVSLLSSCSQLGALDFGCW-LHDYADGNGFDLNVVLGTSLINMYTRCG 339

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM----SENV 255
           +         +  AR VFD M ER+ ++WT M++GY  + Y   A E    M        
Sbjct: 340 N---------VSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPN 390

Query: 256 GVAWNALISGYVH--------------RELKMLMLRIQ-----LDEF------------- 283
            + + A++S   H              +E   L+  ++     +D F             
Sbjct: 391 NITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFI 450

Query: 284 -----------TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                       +TS++ AC     F LG +V  ++L  E +    + +     L  +Y 
Sbjct: 451 KKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVM-----LSNIYA 505

Query: 333 KCGKVNEARDIFNQMPERDL 352
             G+++    + N M  R L
Sbjct: 506 LAGRMDRVEMVRNMMTRRRL 525



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 96/214 (44%), Gaps = 19/214 (8%)

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
           L N +Q+HA ++ SG   S S    LI++    G +  A  +F T+PN DS  +++++  
Sbjct: 104 LRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKV 163

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR-YFETMHGPYGIP 552
             + G     +  Y +ML  G      TF +V+ AC     ++ G+  +   M   Y   
Sbjct: 164 TSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGY--- 220

Query: 553 PGEDHY--ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
            G D Y  A  I L  +A     AK V D++P + +   W +L++G   +G      Q +
Sbjct: 221 -GSDMYVQAALIALYAKASDMKVAKKVFDAMP-QRTIIAWNSLISGYDQNGL----PQES 274

Query: 611 EQLFQLM------PHHAGTYVLLSNMYANLGRWD 638
             LF LM      P  A    LLS+  + LG  D
Sbjct: 275 IGLFHLMMESGFQPDSATIVSLLSSC-SQLGALD 307


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 239/649 (36%), Positives = 356/649 (54%), Gaps = 40/649 (6%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSS-PFVSSRSLMGAA----------RRVFDE 219
           ++HC  + S      +V      ++  C++S P VS + L+  A          RR+F +
Sbjct: 5   ELHCLALFSKCKSLRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDSLHYARRLFLD 64

Query: 220 MPERDELSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVA--------------WNALIS 264
           +   D   + T++ G   +D   +A + F++   ++V +                 AL +
Sbjct: 65  IRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTN 124

Query: 265 GYVHRELKMLMLRIQLDE--FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
           G    +L  L +   LD   F  T++IS  A        ++V   ++        E ++ 
Sbjct: 125 GL---QLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMI--------EPNIV 173

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN 382
             NA+V   ++C  V +A  +F  MP R+L SWN +L+ Y  AG +  A+ +F  M  ++
Sbjct: 174 AWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKD 233

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
            +SW+ MI G A NG   +    F ++R EG +P + +  G +++CA  GA E GR LH 
Sbjct: 234 DVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHG 293

Query: 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
            +  SG+   +S  NALI  Y++CG ++ A  VF+ M    +VSW AMIA +  HG G  
Sbjct: 294 FVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEE 353

Query: 503 AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562
           AI L+ +M +  I PD ITF+++L AC+HAGLV  G  YF  M   YGI P  +HY   +
Sbjct: 354 AIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMV 413

Query: 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622
           DL  RAGK  +A D +  +P  P+  +W  LL  C IHGN+ L  Q   QL +L P ++G
Sbjct: 414 DLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSG 473

Query: 623 TYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQA 682
            +VLLSN+YA  G+W D A +R+ M  + +KK PG S IEV+  ++ F+  +  +  A  
Sbjct: 474 DHVLLSNIYAVAGKWKDVAALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGEKQNDIAVE 533

Query: 683 VYKYLEQLVLEMR-KLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATV 741
            ++ L +++  +R + GYVP+   VLHD+E ++KE ++S HSEKLAVAFG+ KLP G  +
Sbjct: 534 AHQKLREIMSRLRIEGGYVPEVGSVLHDIEVEEKEDSVSQHSEKLAVAFGMAKLPRGRAI 593

Query: 742 RVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           RV+KNLRIC DCH   K +SKV   EIVVRD  RFH F  G CSC DYW
Sbjct: 594 RVVKNLRICRDCHTVMKLISKVYEVEIVVRDRSRFHSFTHGSCSCRDYW 642



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 129/492 (26%), Positives = 212/492 (43%), Gaps = 84/492 (17%)

Query: 61  CKSLKLVYA------RTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDT 114
           CKSL+ V        +T  +  P   +  +  L  A +  D++  AR +F    ++  D 
Sbjct: 15  CKSLRTVKQIQALIFKTCLNSYPL--VSGKLLLHCAVTLPDSLHYARRLF--LDIRNPDV 70

Query: 115 VFYNAMITAYSHNSNGHAAIELFRDMRRDDVK-PDNFTFTSVLSALALIVEEEKQCMQMH 173
             YN +I   S +     A++LF +MRR  V  PD+F+F  +L A A         +Q+H
Sbjct: 71  FMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKA-AANCRALTNGLQLH 129

Query: 174 CTVVKSGTGLFTSVLNALISVYVKCVSSPF-------------VSSRSLMGA-------- 212
           C  V  G      V   LIS+Y +C    F             V+  +++ A        
Sbjct: 130 CLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGVK 189

Query: 213 -ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH--- 268
            A +VF  MP R+  SW  M+ GY K   L  ARE    M     V+W+ +I G+ H   
Sbjct: 190 DAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGN 249

Query: 269 --------RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
                   RE++   +R   +E + T V+SACA +G F  G+ +H ++ ++         
Sbjct: 250 FNDAFAFFREVRREGMRP--NEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQI---- 303

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           + VNNAL+  Y KCG ++ AR +F+ M  R  VSW A+++     G  +EA  LF  M E
Sbjct: 304 ISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEE 363

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
            N+                               KP    F   + +C+  G ++ G   
Sbjct: 364 SNI-------------------------------KPDSITFISILYACSHAGLVDLGCSY 392

Query: 441 HAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHG 498
            +++V++ G +  +     ++ +Y R G ++ A      MP + + + W  ++ A   HG
Sbjct: 393 FSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHG 452

Query: 499 NGARAIELYEQM 510
           N   A ++  Q+
Sbjct: 453 NLYLAGQVKRQL 464


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/576 (38%), Positives = 320/576 (55%), Gaps = 44/576 (7%)

Query: 224 DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRI----- 278
           D L+   ++  Y K    D AR   D M     V+WN +I+GY H    +  L++     
Sbjct: 91  DTLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMH 150

Query: 279 ----QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
                + EFT +S I ACA        KQ+H   L+         +L  N+ + T     
Sbjct: 151 REGTHMSEFTLSSTICACAAKYAINECKQLHTIALK--------LALDSNSFVGT----- 197

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
                                 AIL  Y    +I +A  +FE M ER L++W+ + +G  
Sbjct: 198 ----------------------AILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYV 235

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
           QNG  EE L LF   + EG +  ++  +  +++CA L     G QLHA ++  G+  +  
Sbjct: 236 QNGLHEEALHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFF 295

Query: 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
              +L+ +YARCG +E A  +F  M + + V WNAMIA+  +H +   A+ L+E+M + G
Sbjct: 296 VAASLVDVYARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLG 355

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
           I P+ +T+L+VLS C+HAGLV++GR YF  +     + P   HY+  +D+L R+GK  EA
Sbjct: 356 IFPNEVTYLSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEA 415

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL 634
            ++++ +PF+P+A +W +LL  CR + NI L   AAEQLFQL P + G +VLLSN+YA  
Sbjct: 416 WELLNKMPFEPTASMWGSLLGSCRNYNNIRLARIAAEQLFQLEPDNGGNHVLLSNVYAAS 475

Query: 635 GRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEM 694
           G W++    RK ++D G KKE G SWIE   KVHVF+V +  HP    +Y  LE++  EM
Sbjct: 476 GNWENVLMARKYLKDSGAKKEMGRSWIEAKGKVHVFVVGERKHPRITDIYNKLEEIYHEM 535

Query: 695 RKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCH 754
           RK       +  LHD+ ++QKE  L  HSEKLA++FGL+ LP    + + KNLRICGDCH
Sbjct: 536 RKFARRTSIECDLHDVHAEQKEELLKHHSEKLALSFGLISLPSNIPIIIHKNLRICGDCH 595

Query: 755 NAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +  K  + +  R ++VRD  RFHHF+DG CSCGD+W
Sbjct: 596 SFMKIAAHITERLVIVRDTNRFHHFKDGSCSCGDFW 631



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 118/504 (23%), Positives = 210/504 (41%), Gaps = 106/504 (21%)

Query: 17  ASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEI 76
           + +LQLC  R  +   + +S H   I  G        N LI++Y K  +   AR +FD  
Sbjct: 61  SQRLQLCAKRKSLL--VGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFD-- 116

Query: 77  PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
                                           + +R  V +N MI  Y+H+     A++L
Sbjct: 117 -------------------------------IMHVRSIVSWNTMIAGYTHSGEDVQALKL 145

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           F  M R+      FT +S + A A       +C Q+H   +K      + V  A++ VY 
Sbjct: 146 FSRMHREGTHMSEFTLSSTICACAAKY-AINECKQLHTIALKLALDSNSFVGTAILDVYA 204

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           KC         +++  A  VF++MPER  ++W+++  GYV+N   + A       ++  G
Sbjct: 205 KC---------NMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFR-CAQREG 254

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
           V                     +L EFT ++++SACA+  L   G Q+HA +L    K  
Sbjct: 255 V---------------------ELTEFTLSAILSACASLALKIEGIQLHAVIL----KCG 289

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
              +  V  +LV +Y +CG++ +A  +F  M  +++V WNA+++++              
Sbjct: 290 FHGNFFVAASLVDVYARCGQIEKAYALFAYMEHKNVVIWNAMIASF-------------- 335

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
               R+  SW  MI              LF +M+  G  P +  +   ++ C+  G +E 
Sbjct: 336 ---SRHAHSWEAMI--------------LFEKMQQLGIFPNEVTYLSVLSVCSHAGLVEK 378

Query: 437 GRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAAL 494
           GR   + L+     + ++   + ++ +  R G  + A  + N MP   + S W +++ + 
Sbjct: 379 GRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWELLNKMPFEPTASMWGSLLGSC 438

Query: 495 GQHGNGARAIELYEQMLKEGILPD 518
             + N   A    EQ+ +  + PD
Sbjct: 439 RNYNNIRLARIAAEQLFQ--LEPD 460



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 2/177 (1%)

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
           A +  +  CA   +L  G+  H   +H G  +     N LI +Y +CG  + A  VF+ M
Sbjct: 59  AISQRLQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIM 118

Query: 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
                VSWN MIA     G   +A++L+ +M +EG      T  + + AC     + E +
Sbjct: 119 HVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECK 178

Query: 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           +   T+     +          +D+  +     +A  V + +P + +   W +L AG
Sbjct: 179 Q-LHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMP-ERTLVTWSSLFAG 233


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/625 (36%), Positives = 349/625 (55%), Gaps = 67/625 (10%)

Query: 167 KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDEL 226
           +   Q+H  ++ SG     S+L  LIS+         V +   +  ARR+F  +P  D  
Sbjct: 41  RNLQQVHAHIIVSGLHRSRSLLTKLISL---------VCTAGSITYARRLFPTVPNPDSF 91

Query: 227 SWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYT 286
            + +++                  ++   G + + ++    +R  +ML        +T+T
Sbjct: 92  LFDSLLK-----------------VTSKFGFSIDTVL---FYR--RMLFSGAPQSNYTFT 129

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
           SVI ACA+    RLGK++H++++                        CG      D++ Q
Sbjct: 130 SVIKACADLSALRLGKEIHSHVM-----------------------VCGY---GSDMYVQ 163

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
                     A+++ Y  A  +  AK +F+AM +R +++W  +ISG  QNG  +E + LF
Sbjct: 164 A---------ALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLF 214

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
             M   GF+P        ++SC+ LGAL+ G  LH     +G+D ++  G +LI MY RC
Sbjct: 215 HLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRC 274

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G V  A  VF++M   + V+W AMI+  G HG G +A+EL+ +M   G  P+ ITF+ VL
Sbjct: 275 GNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVL 334

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS-LPFKP 585
           SAC H+GL+ +GRR F +M   YG+ PG +H    +D+  RAG  ++A   I   +P +P
Sbjct: 335 SACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEP 394

Query: 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645
              +W ++L  CR+H N DLG++ AE +  + P + G YV+LSN+YA  GR D    VR 
Sbjct: 395 GPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRN 454

Query: 646 LMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKF 705
           +M  R +KK+ G S IE++ K ++F + D +HP+   +Y+YL++L+    + GYVP  + 
Sbjct: 455 MMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPES 514

Query: 706 VLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVG 765
           ++HD+E ++++YAL  HSEKLA+AFGL+K   G T+R++KNLRIC DCH+A K +S +  
Sbjct: 515 LMHDLEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIAD 574

Query: 766 REIVVRDGKRFHHFRDGKCSCGDYW 790
           REI+VRD  RFHHF+DG CSC DYW
Sbjct: 575 REIIVRDKFRFHHFKDGSCSCLDYW 599



 Score =  149 bits (376), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 119/498 (23%), Positives = 220/498 (44%), Gaps = 114/498 (22%)

Query: 27  NPITSSLARS---------VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP 77
           +P+  +L RS         VHAH+I SG      ++ +LI + C +  + YAR LF  +P
Sbjct: 27  SPVHEALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVP 86

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
            PD     +L+   S             K    +   +FY  M+ + +  S         
Sbjct: 87  NPDSFLFDSLLKVTS-------------KFGFSIDTVLFYRRMLFSGAPQS--------- 124

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
                      N+TFTSV+ A A +    +   ++H  V+  G G    V  ALI++Y K
Sbjct: 125 -----------NYTFTSVIKACADL-SALRLGKEIHSHVMVCGYGSDMYVQAALIALYAK 172

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM-SENVG 256
                     S M  A++VFD MP+R  ++W ++++GY +N           G+  E++G
Sbjct: 173 A---------SDMKVAKKVFDAMPQRTIIAWNSLISGYDQN-----------GLPQESIG 212

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
           +    + SG+            Q D  T  S++S+C+  G    G  +H Y         
Sbjct: 213 LFHLMMESGF------------QPDSATIVSLLSSCSQLGALDFGCWLHDY----ADGNG 256

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
            + ++ +  +L+ +Y +CG V++AR++F+ M ER++V+W A++S Y              
Sbjct: 257 FDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGY-------------- 302

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
                              +GYG + ++LF++MR  G +P +  F   +++CA  G +++
Sbjct: 303 -----------------GMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDD 345

Query: 437 GRQLHAQLVHS-GYDSSLSAGNALITMYARCGVV-EAANCVFNTMPNVDSVS-WNAMIAA 493
           GR++ + +  + G    +     ++ M+ R G++ +A   +   +P     + W +M+ A
Sbjct: 346 GRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGA 405

Query: 494 LGQHGNGARAIELYEQML 511
              H N    +++ E +L
Sbjct: 406 CRMHRNFDLGVKVAEHVL 423



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 135/320 (42%), Gaps = 64/320 (20%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+  +  LIA Y+ + ++K+A+++F+  P   R  + +N++I+ Y  N     +I LF  
Sbjct: 159 DMYVQAALIALYAKASDMKVAKKVFDAMP--QRTIIAWNSLISGYDQNGLPQESIGLFHL 216

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M     +PD+ T  S+LS+ + +   +  C  +H     +G  L   +  +LI++Y +C 
Sbjct: 217 MMESGFQPDSATIVSLLSSCSQLGALDFGCW-LHDYADGNGFDLNVVLGTSLINMYTRCG 275

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM----SENV 255
           +         +  AR VFD M ER+ ++WT M++GY  + Y   A E    M        
Sbjct: 276 N---------VSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPN 326

Query: 256 GVAWNALISGYVH--------------RELKMLMLRIQ-----LDEF------------- 283
            + + A++S   H              +E   L+  ++     +D F             
Sbjct: 327 NITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFI 386

Query: 284 -----------TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                       +TS++ AC     F LG +V  ++L  E +    + +     L  +Y 
Sbjct: 387 KKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVM-----LSNIYA 441

Query: 333 KCGKVNEARDIFNQMPERDL 352
             G+++    + N M  R L
Sbjct: 442 LAGRMDRVEMVRNMMTRRRL 461



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 96/214 (44%), Gaps = 19/214 (8%)

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
           L N +Q+HA ++ SG   S S    LI++    G +  A  +F T+PN DS  +++++  
Sbjct: 40  LRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKV 99

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR-YFETMHGPYGIP 552
             + G     +  Y +ML  G      TF +V+ AC     ++ G+  +   M   Y   
Sbjct: 100 TSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGY--- 156

Query: 553 PGEDHY--ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610
            G D Y  A  I L  +A     AK V D++P + +   W +L++G   +G      Q +
Sbjct: 157 -GSDMYVQAALIALYAKASDMKVAKKVFDAMP-QRTIIAWNSLISGYDQNGL----PQES 210

Query: 611 EQLFQLM------PHHAGTYVLLSNMYANLGRWD 638
             LF LM      P  A    LLS+  + LG  D
Sbjct: 211 IGLFHLMMESGFQPDSATIVSLLSSC-SQLGALD 243


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 249/795 (31%), Positives = 391/795 (49%), Gaps = 117/795 (14%)

Query: 3   MKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCK 62
           M +AD +    + Y    + C     +     R +H  +  +   P   I N L+ +YC 
Sbjct: 78  MDDAD-VSVTPHSYQCLFEACGKLRSLAD--GRLIHDRLRRTVKNPSGSIENCLLRMYCD 134

Query: 63  SLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
               +  + +FDE                                 + M++ V +  +I+
Sbjct: 135 CGSCIDVQKVFDE---------------------------------MLMKNLVSWVIVIS 161

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL-SALALIVEEEKQCMQMHCTVVKSGT 181
           AY+ N     AI LF DM+   ++P++  + S+L S L     E  +  Q+H  V+++  
Sbjct: 162 AYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGK--QIHSHVIRAQL 219

Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
               +V  A+ ++YV+C           +  A+ VFD M  ++ ++WT +M GY +   L
Sbjct: 220 NANITVETAICNMYVRC---------GWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKL 270

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
           + A E                         +M M  ++LDEF ++ V+  C     + +G
Sbjct: 271 EVALELF----------------------ARMAMEGVELDEFVFSIVLKVCCGLEDWDMG 308

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
           +Q+H+++++  A    E  + V   LV  Y KCG +  A   F ++ E + VSW+A++S 
Sbjct: 309 RQIHSHIVKLGA----ESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISG 364

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
           +                               +Q+G  E+ +K+F+ +R EG     + +
Sbjct: 365 F-------------------------------SQSGRLEDCIKIFTSLRSEGVVLNSFIY 393

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
                +CA    L  G Q H   +  G  S L   +A++TMY++CG ++ A   F ++  
Sbjct: 394 TSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDE 453

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY 541
            D+V+W A+I+    HGN A A+  + +M   G+ P+ +TF+ VL+AC+H+GLV E ++Y
Sbjct: 454 PDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQY 513

Query: 542 FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
             +M   YG+ P  DHY   ID   RAG   EA ++I+ +PF+P A  W++LL GC  H 
Sbjct: 514 LGSMSRDYGVKPTIDHYDCMIDTYSRAGLLQEALELINRMPFEPDAMSWKSLLGGCWAHC 573

Query: 602 NIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWI 661
           ++ LG  AAE LF+L P     Y+LL N+Y+  G+W++A  VRKLM +R +KKE  CSWI
Sbjct: 574 DLKLGKIAAENLFRLDPGDTAGYILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWI 633

Query: 662 EVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESD------QK 715
            V  +VH F+V D  HP+ +A+Y  LE+          V D+   L + E D       +
Sbjct: 634 SVKGQVHRFVVGDRHHPQTEAIYSKLEEFKCS------VIDSPVRLLNEEDDVSCSLSAR 687

Query: 716 EYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKR 775
           +  L  HSEKLA+AFGL+     A + V KNLR C DCH   K +S V GR+IVVRD  R
Sbjct: 688 KEQLLDHSEKLAIAFGLISTEDNAPILVFKNLRACRDCHEFGKQVSMVTGRQIVVRDSTR 747

Query: 776 FHHFRDGKCSCGDYW 790
           FHHF+ GKCSC DYW
Sbjct: 748 FHHFKSGKCSCNDYW 762



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 71/148 (47%)

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
           L++ G  +E      +M         +++     +C  L +L +GR +H +L  +  + S
Sbjct: 62  LSKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPS 121

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
            S  N L+ MY  CG       VF+ M   + VSW  +I+A  ++G   +AI L+  M  
Sbjct: 122 GSIENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQA 181

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRR 540
            GI P+   ++++L +C     ++ G++
Sbjct: 182 SGIRPNSAVYMSLLQSCLGPSFLELGKQ 209


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 260/721 (36%), Positives = 376/721 (52%), Gaps = 84/721 (11%)

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR 142
           A   L++ Y+    V  A+ +F        D V +N M++    +     A++   DM  
Sbjct: 53  AFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVA 112

Query: 143 DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS-VLNALISVYVKCVSS 201
             V+PD  TF S L A + + E      +MH  V+K       S V +AL+ +Y      
Sbjct: 113 LGVRPDGVTFASALPACSRL-ELLDVGREMHAYVIKDDELAANSFVASALVDMY------ 165

Query: 202 PFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNA 261
              ++   +G AR+VFD +P                    D+ ++   GM       WNA
Sbjct: 166 ---ATHEQVGKARQVFDMVP--------------------DSGKQL--GM-------WNA 193

Query: 262 LISGYVH----RELKMLMLRIQLD------EFTYTSVISACANSGLFRLGKQVHAYLLRT 311
           +I GY       E   L  R++ +      E T  SV+ ACA S  F   + VH Y+++ 
Sbjct: 194 MICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVK- 252

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
                  F   V NAL+ +Y + GK + AR IF  +   D+VSWN +++  V  G + +A
Sbjct: 253 RGMAGNRF---VQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADA 309

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
              F+  RE   L               EEG          G  P        +  CA L
Sbjct: 310 ---FQLAREMQQL---------------EEG----------GVVPNAITLMTLLPGCAIL 341

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
            A   G+++H   V    D+ ++ G+AL+ MYA+CG +  +  VF+ +P  ++++WN +I
Sbjct: 342 AAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLI 401

Query: 492 AALGQHGNGARAIELYEQMLKEG-ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
            A G HG G  A  L+++M   G   P+ +TF+  L+AC+H+G+V  G + F  M   +G
Sbjct: 402 MAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHG 461

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF-KPSAPIWEALLAGCRIHGNIDLGIQA 609
           + P  D  A  +D+L RAG+  EA  ++ S+   +     W  +L  CR+H N+ LG  A
Sbjct: 462 VEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIA 521

Query: 610 AEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHV 669
            E+L +L P  A  YVLL N+Y+  G+W  AA VR  MR RGV KEPGCSWIEVD  +H 
Sbjct: 522 GERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHR 581

Query: 670 FLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVA 729
           F+  ++AHP ++ V+ ++E L  EM   GY PDT  VLHDM+   K   L  HSEKLA+A
Sbjct: 582 FMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIA 641

Query: 730 FGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
           FGL++   GAT+RV KNLR+C DCH A KF+SK+VGREIV+RD +RFHHFR+G+CSCGDY
Sbjct: 642 FGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDY 701

Query: 790 W 790
           W
Sbjct: 702 W 702



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 156/352 (44%), Gaps = 45/352 (12%)

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
           DE+     VA + L+  Y+  + V  AR++F+  P   +    +NAMI  Y+       A
Sbjct: 149 DELAANSFVA-SALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEA 207

Query: 134 IELFRDMRRD-DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           + LF  M  +    P   T  SVL A A   E       +H  VVK G      V NAL+
Sbjct: 208 LRLFARMEAEAGFVPCETTMASVLPACAR-SEAFAGKEAVHGYVVKRGMAGNRFVQNALM 266

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
            +Y +   +           ARR+F  +   D +SW T++TG V   ++  A +    M 
Sbjct: 267 DMYARLGKTDV---------ARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQ 317

Query: 253 --ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
             E  GV  NA+                     T  +++  CA       GK++H Y +R
Sbjct: 318 QLEEGGVVPNAI---------------------TLMTLLPGCAILAAPARGKEIHGYAVR 356

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
                  +  + V +ALV +Y KCG +  +R +F+++P R+ ++WN ++ AY   GL  E
Sbjct: 357 H----ALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGE 412

Query: 371 AKSLFEAMRER-----NLLSWTVMISGLAQNGYGEEGLKLFSQM-RLEGFKP 416
           A  LF+ M        N +++   ++  + +G  + GL+LF  M R  G +P
Sbjct: 413 ATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEP 464



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 135/333 (40%), Gaps = 76/333 (22%)

Query: 36  SVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY---- 91
           +VH +++  G      + N L+D+Y +  K   AR +F  +  PD+V+  TLI       
Sbjct: 245 AVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQG 304

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
             +D  +LAREM                                  + +    V P+  T
Sbjct: 305 HVADAFQLAREM----------------------------------QQLEEGGVVPNAIT 330

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             ++L   A++    +   ++H   V+       +V +AL+ +Y KC           + 
Sbjct: 331 LMTLLPGCAILAAPARG-KEIHGYAVRHALDTDVAVGSALVDMYAKC---------GCLA 380

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            +R VFD +P R+ ++W  ++  Y  +     A    D M+           SG      
Sbjct: 381 LSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTA----------SG------ 424

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQV-HAYLLRTEAKPTPEFSLPVNNALVTL 330
                  + +E T+ + ++AC++SG+   G Q+ HA       +PTP+    +   +V +
Sbjct: 425 -----EARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPD----ILACVVDI 475

Query: 331 YWKCGKVNEARDIFNQMP--ERDLVSWNAILSA 361
             + G+++EA  +   M   E+ + +W+ +L A
Sbjct: 476 LGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGA 508



 Score = 43.1 bits (100), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 6/141 (4%)

Query: 25  PRNPITSSLARS--VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIV 82
           P   I ++ AR   +H + +         + + L+D+Y K   L  +R +FD +P+ + +
Sbjct: 336 PGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTI 395

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMR---DTVFYNAMITAYSHNSNGHAAIELFRD 139
               LI AY        A  +F++         + V + A + A SH+      ++LF  
Sbjct: 396 TWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHA 455

Query: 140 MRRD-DVKPDNFTFTSVLSAL 159
           M RD  V+P       V+  L
Sbjct: 456 MERDHGVEPTPDILACVVDIL 476


>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
          Length = 634

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 236/708 (33%), Positives = 370/708 (52%), Gaps = 83/708 (11%)

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
           YS  D+ + AR +   TP   R+ V + ++I+  + N +   A+  F +MRR+ V P++F
Sbjct: 2   YSKLDHPESARLVLRLTP--ARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDF 59

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           TF     A+A +        Q+H   VK G          ++ V+V C +        L 
Sbjct: 60  TFPCAFKAVASL-RLPVTGKQIHALAVKCGR---------ILDVFVGCSAFDMYCKTRLR 109

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKN----DYLDAAREF--LDGMSENVGVAWNALIS 264
             AR++FDE+PER+  +W   ++  V +    + ++A  EF  +DG   ++         
Sbjct: 110 DDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSI--------- 160

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
                              T+ + ++AC++     LG Q+H  +LR+      +  + V 
Sbjct: 161 -------------------TFCAFLNACSDWLHLNLGMQLHGLVLRSGF----DTDVSVC 197

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
           N L+  Y KC ++  +  IF +M  +                               N +
Sbjct: 198 NGLIDFYGKCKQIRSSEIIFTEMGTK-------------------------------NAV 226

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
           SW  +++   QN   E+   L+ + R +  +  D+  +  +++CAG+  LE GR +HA  
Sbjct: 227 SWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHA 286

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
           V +  + ++  G+AL+ MY +CG +E +   F+ MP  + V+ N++I      G    A+
Sbjct: 287 VKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMAL 346

Query: 505 ELYEQMLKEGI--LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562
            L+E+M   G    P+ +TF+++LSAC+ AG V+ G + F++M   YGI PG +HY+  +
Sbjct: 347 ALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIV 406

Query: 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622
           D+L RAG    A + I  +P +P+  +W AL   CR+HG   LG+ AAE LF+L P  +G
Sbjct: 407 DMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSG 466

Query: 623 TYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQA 682
            +VLLSN +A  GRW +A  VR+ ++  G+KK  G SWI V N+VH F   D +H   + 
Sbjct: 467 NHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKE 526

Query: 683 VYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVR 742
           +   L +L  EM   GY PD K  L+D+E ++K   +S HSEKLA+AFGL+ LP    +R
Sbjct: 527 IQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIR 586

Query: 743 VLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           + KNLRICGDCH+ FKF+S  V REI+VRD  RFH F+DG CSC DYW
Sbjct: 587 ITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 634



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 132/333 (39%), Gaps = 71/333 (21%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           +L   +H  ++ SGF     + N LID Y K  ++  +  +F E+   + V+  +L+AA 
Sbjct: 176 NLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAA- 234

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                                           Y  N     A  L+   R+D V+  +F 
Sbjct: 235 --------------------------------YVQNHEDEKASVLYLRSRKDIVETSDFM 262

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
            +SVLSA A +   E     +H   VK+       V +AL+ +Y KC           + 
Sbjct: 263 ISSVLSACAGMAGLELG-RSIHAHAVKACVERTIFVGSALVDMYGKC---------GCIE 312

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS-ENVGVAWNALISGYVHRE 270
            + + FDEMPE++ ++  +++ GY     +D A    + M+    G   N +        
Sbjct: 313 DSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYM-------- 364

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVT 329
                        T+ S++SAC+ +G    G ++   +  T   +P  E      + +V 
Sbjct: 365 -------------TFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHY----SCIVD 407

Query: 330 LYWKCGKVNEARDIFNQMPERDLVS-WNAILSA 361
           +  + G V  A +   +MP +  +S W A+ +A
Sbjct: 408 MLGRAGMVERAYEFIKKMPIQPTISVWGALQNA 440



 Score = 46.6 bits (109), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 24/159 (15%)

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           MY++    E+A  V    P  + VSW ++I+ L Q+G+ + A+  + +M +EG++P+  T
Sbjct: 1   MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFT 60

Query: 522 F-----------LTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
           F           L V     HA  VK G R  +   G               D+ C+   
Sbjct: 61  FPCAFKAVASLRLPVTGKQIHALAVKCG-RILDVFVG-----------CSAFDMYCKTRL 108

Query: 571 FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609
             +A+ + D +P + +   W A ++     G     I+A
Sbjct: 109 RDDARKLFDEIP-ERNLETWNAFISNSVTDGRPREAIEA 146


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/643 (36%), Positives = 342/643 (53%), Gaps = 75/643 (11%)

Query: 157 SALALIVEE--EKQCMQM----HCTVVKS-GTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           ++LA +VE     QC ++    H  ++K+    L + + N L+++Y K +  P       
Sbjct: 7   NSLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSK-LDRP------- 58

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
             +A+ +    P R  ++WT ++ G V+N    +A      M  +               
Sbjct: 59  -NSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRD--------------- 102

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
                   IQ ++FT+     A  +     +GKQVHA                       
Sbjct: 103 -------SIQPNDFTFPCAFKASGSLRSPLVGKQVHA----------------------- 132

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           L  K G+++   D+F      D+         Y  AGL +EA+ +F+ M ERN+ +W   
Sbjct: 133 LAVKAGQIS---DVFVGCSAFDM---------YSKAGLTEEARKMFDEMPERNIATWNAY 180

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           +S     G  ++ L  F + R EG +P D+  +  +++CAGL  LE G+ +H   V +  
Sbjct: 181 LSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACV 240

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
             ++  G+AL+ MY +CG +E A   F+ MP  + V+WNAMI      G    A+ L+++
Sbjct: 241 VGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDE 300

Query: 510 ML--KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR 567
           M      + P+ +TF+ VLSAC+ AG V  G   FE+M G YGI PG +HYA  +DLL R
Sbjct: 301 MTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGR 360

Query: 568 AGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627
           AG   +A   I  +P +P+  +W ALL   ++ G  +LG  AA+ LF+L P  +G +VLL
Sbjct: 361 AGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLL 420

Query: 628 SNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYL 687
           SNM+A  GRW++A  VRK M+D G+KK  GCSWI   N VHVF   DT+H     +   L
Sbjct: 421 SNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAML 480

Query: 688 EQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNL 747
            +L  EM   GY+PDT F L D+E ++K   +  HSEK+A+AFGL+ +P G  +R+ KNL
Sbjct: 481 AKLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNL 540

Query: 748 RICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           RICGDCH+A KF+S +VGREI+VRD   FH FRD +CSC DYW
Sbjct: 541 RICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 583



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 184/430 (42%), Gaps = 82/430 (19%)

Query: 77  PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
           P P  +    L+  YS  D    A+ + + TP   R  V + A+I     N    +A+  
Sbjct: 39  PLPSFI-YNHLVNMYSKLDRPNSAQLLLSLTP--NRSVVTWTALIAGSVQNGRFTSALFH 95

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           F +MRRD ++P++FTF     A   +        Q+H   VK+G          +  V+V
Sbjct: 96  FSNMRRDSIQPNDFTFPCAFKASGSL-RSPLVGKQVHALAVKAGQ---------ISDVFV 145

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV-KNDYLDAAREFLDGMSENV 255
            C +    S   L   AR++FDEMPER+  +W   ++  V +  Y DA   F++   E  
Sbjct: 146 GCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEARKEG- 204

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                                 I+  +F  +SV+SACA   +  +GK VH   +    K 
Sbjct: 205 ----------------------IEPTDFMVSSVLSACAGLSVLEVGKSVHTLAV----KA 238

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
               ++ V +ALV +Y KCG + +A   F++MPER+LV+WNA++  Y   G  D A +LF
Sbjct: 239 CVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLF 298

Query: 376 EAMR------ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
           + M         N +++  ++S  ++ G    G+++F  MR                   
Sbjct: 299 DEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMR------------------- 339

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WN 488
           G   +E G + +A                ++ +  R G+VE A      MP   +VS W 
Sbjct: 340 GRYGIEPGAEHYA---------------CVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWG 384

Query: 489 AMIAALGQHG 498
           A++ A    G
Sbjct: 385 ALLGASKMFG 394



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 151/353 (42%), Gaps = 46/353 (13%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+    +    YS +   + AR+MF++ P   R+   +NA ++          A+  F +
Sbjct: 142 DVFVGCSAFDMYSKAGLTEEARKMFDEMP--ERNIATWNAYLSNSVLEGRYDDALTAFIE 199

Query: 140 MRRDDVKPDNFTFTSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
            R++ ++P +F  +SVLSA A L V E  +   +H   VK+       V +AL+ +Y KC
Sbjct: 200 ARKEGIEPTDFMVSSVLSACAGLSVLEVGK--SVHTLAVKACVVGNIFVGSALVDMYGKC 257

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
            S         +  A R FDEMPER+ ++W  M+ GY      D A    D         
Sbjct: 258 GS---------IEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFD--------- 299

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLL-RTEAKPTP 317
                      E+     R+  +  T+  V+SAC+ +G   +G ++   +  R   +P  
Sbjct: 300 -----------EMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGA 348

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSAYVSAGLIDEAKSLFE 376
           E    V    V L  + G V +A     +MP R  VS W A+L A    G  +  K   +
Sbjct: 349 EHYACV----VDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAAD 404

Query: 377 AMRERNLLSWT--VMISGL-AQNGYGEEGLKLFSQMRLEGFKP---CDYAFAG 423
            + E + L     V++S + A  G  EE   +  +M+  G K    C +  AG
Sbjct: 405 NLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAG 457


>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 472

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 194/444 (43%), Positives = 282/444 (63%), Gaps = 2/444 (0%)

Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQ 408
           ER      A+L AYV  G ++EA  +F  + ++++++W+ M++G AQ G  E  +K+F +
Sbjct: 29  ERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGE 88

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGA-LENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467
           +   G KP ++ F+  +  CA   A +  G+Q H   + S  DSSL   +AL+TMYA+ G
Sbjct: 89  LTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKG 148

Query: 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
            +E+A  VF      D VSWN+MI+   QHG   +A++++++M K  +  D +TF+ V +
Sbjct: 149 NIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFA 208

Query: 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSA 587
           AC HAGLV+EG +YF+ M     I P ++H +  +DL  RAG+  +A  VI+++P    +
Sbjct: 209 ACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGS 268

Query: 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647
            IW  +LA CR+H   +LG  AAE++  + P  +  YVLLSNMYA  G W + A+VRKLM
Sbjct: 269 TIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLM 328

Query: 648 RDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVL 707
            +R VKKEPG SWIEV NK + FL  D +HP    +Y  LE L   ++ LGY PDT +VL
Sbjct: 329 NERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVL 388

Query: 708 HDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGRE 767
            D++ + KE  L+ HSE+LA+AFGL+  P G+ + ++KNLR+CGDCH   K ++K+  RE
Sbjct: 389 QDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEERE 448

Query: 768 IVVRDGKRFHHF-RDGKCSCGDYW 790
           IVVRD  RFHHF  DG CSCGD+W
Sbjct: 449 IVVRDSNRFHHFSSDGVCSCGDFW 472



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 158/352 (44%), Gaps = 76/352 (21%)

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           FT++ +L+AL +I   E     +H  VVK+     ++V  AL+  YVK            
Sbjct: 2   FTYSVILTALPVISPSE-----VHAQVVKTNYERSSTVGTALLDAYVKL---------GK 47

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +  A +VF  + ++D ++W+ M+ GY +    +AA +    +++                
Sbjct: 48  VEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKG--------------- 92

Query: 270 ELKMLMLRIQLDEFTYTSVISACA--NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327
                   I+ +EFT++S+++ CA  N+ + + GKQ H + +++      + SL V++AL
Sbjct: 93  -------GIKPNEFTFSSILNVCAATNASMGQ-GKQFHGFAIKSRL----DSSLCVSSAL 140

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWT 387
           +T+Y K G +  A ++F +  E+DLVSWN+++S Y                         
Sbjct: 141 LTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGY------------------------- 175

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447
                 AQ+G   + L +F +M+    K     F G   +C   G +E G +    +V  
Sbjct: 176 ------AQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRD 229

Query: 448 GYDSSLSAGNA-LITMYARCGVVEAANCVFNTMPN-VDSVSWNAMIAALGQH 497
              +     N+ ++ +Y+R G +E A  V   MPN   S  W  ++AA   H
Sbjct: 230 CKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVH 281



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 134/279 (48%), Gaps = 39/279 (13%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           T L+ AY     V+ A ++F  + +  +D V ++AM+  Y+      AAI++F ++ +  
Sbjct: 36  TALLDAYVKLGKVEEAAKVF--SGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGG 93

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           +KP+ FTF+S+L+  A       Q  Q H   +KS       V +AL+++Y K       
Sbjct: 94  IKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAK------- 146

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
             +  + +A  VF    E+D +SW +M++GY ++                 G A  AL  
Sbjct: 147 --KGNIESAEEVFKRQREKDLVSWNSMISGYAQH-----------------GQAMKAL-- 185

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR-TEAKPTPEFSLPV 323
             V +E+K    ++++D  T+  V +AC ++GL   G++    ++R  +  PT E     
Sbjct: 186 -DVFKEMK--KRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEH---- 238

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPE-RDLVSWNAILSA 361
           N+ +V LY + G++ +A  +   MP       W  IL+A
Sbjct: 239 NSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAA 277



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 11/169 (6%)

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           ++HAQ+V + Y+ S + G AL+  Y + G VE A  VF+ + + D V+W+AM+A   Q G
Sbjct: 18  EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTG 77

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL-VKEGRRYFETMHGPYGIPPGEDH 557
               AI+++ ++ K GI P+  TF ++L+ C      + +G+++    HG + I    D 
Sbjct: 78  ETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQF----HG-FAIKSRLDS 132

Query: 558 ----YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
                +  + +  + G    A++V      K     W ++++G   HG 
Sbjct: 133 SLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVS-WNSMISGYAQHGQ 180


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/500 (42%), Positives = 302/500 (60%), Gaps = 6/500 (1%)

Query: 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC-GKVNEARDIFNQMPERD 351
           A  G  RL   VHA+ +R          L VNNAL+ ++    G++ +A  +       D
Sbjct: 103 AVPGARRLALAVHAHAVRLGLAGF----LLVNNALIRVHAGLLGRLADAHLLLRTSAAVD 158

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
             ++N +++A+  AG + +A+SLF+ M ERN +SW+ M++G  Q G G E L +FSQM+ 
Sbjct: 159 ASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQA 218

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
           +G +P D    G + +CA LGALE G+ +H  L  +    ++  G AL+ MYA+CG V+ 
Sbjct: 219 QGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQL 278

Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
              VF  M + + ++W  MI  L  HG G+ ++ L+ QM   G+ PD I F+  L AC H
Sbjct: 279 GMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTH 338

Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
            GLV +GR  F +M   YGI P  +HY   +DLL R G  SEA+D+++ +P KP A IW 
Sbjct: 339 TGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWG 398

Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
           AL+AGCR H N++L     +   +L P  +G YVLL N+Y+  GR   A  +R LMR++G
Sbjct: 399 ALMAGCRFHKNVELAEYVIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMREKG 458

Query: 652 VKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMR-KLGYVPDTKFVLHDM 710
           V+K PGCS +E+   +H F+V D +HP  + +     ++   +R + GYVPD K VL D+
Sbjct: 459 VEKTPGCSNVEIKGVIHQFIVGDLSHPRIKDILTKWYEIDSRIRLEEGYVPDKKEVLLDI 518

Query: 711 ESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVV 770
           E ++ E ALS HSEKLA+AF L+       +R++KNLR+C DCH+  K +SKV GREI+V
Sbjct: 519 EEEEMESALSRHSEKLAIAFALISTEDYMPIRIVKNLRVCQDCHHVTKLISKVYGREIIV 578

Query: 771 RDGKRFHHFRDGKCSCGDYW 790
           RD  RFH F+DG CSC DYW
Sbjct: 579 RDRTRFHLFKDGTCSCKDYW 598



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 193/438 (44%), Gaps = 91/438 (20%)

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALAL---IVEEEKQ 168
           R    ++A+I A++ +    AA+ L+  + R  + P   T  S+L +LAL   +    + 
Sbjct: 51  RSAELHDALIRAHASSGRPQAALPLYAHLIRAGLFPTPHTLPSLLKSLALSPAVPGARRL 110

Query: 169 CMQMHCTVVKSGTGLFTSVLNALISVYVKCVS--------------------SPFVSSRS 208
            + +H   V+ G   F  V NALI V+   +                     +  +++ +
Sbjct: 111 ALAVHAHAVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHA 170

Query: 209 LMGA---ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265
             G    AR +FDEMPER+ +SW+ M+ GYV+           DG  E +GV       G
Sbjct: 171 RAGRVADARSLFDEMPERNAVSWSAMVNGYVQAG---------DG-REALGVFSQMQAQG 220

Query: 266 YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
                       ++ D+     V++ACA  G    GK VH YL     + T    + +  
Sbjct: 221 ------------VRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMT----VFLGT 264

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
           ALV +Y KCG+V    ++F  M ++++++W                              
Sbjct: 265 ALVDMYAKCGEVQLGMEVFEGMKDKNVLAW------------------------------ 294

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
            T MI GLA +G G + L LFSQM   G KP D AF GA+ +C   G ++ GR+L   +V
Sbjct: 295 -TTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMV 353

Query: 446 HS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARA 503
           ++ G    +     ++ + AR G++  A  +   MP   D++ W A++A    H N    
Sbjct: 354 NNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKN---- 409

Query: 504 IELYEQMLKEGI--LPDR 519
           +EL E ++K  I   PD+
Sbjct: 410 VELAEYVIKHWIELEPDK 427



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 146/340 (42%), Gaps = 41/340 (12%)

Query: 25  PRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSL-KLVYARTLFDEIPQPDIVA 83
           P  P    LA +VHAH +  G      + N LI ++   L +L  A  L       D   
Sbjct: 102 PAVPGARRLALAVHAHAVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDAST 161

Query: 84  RTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD 143
             TLI A++ +  V  AR +F++ P   R+ V ++AM+  Y    +G  A+ +F  M+  
Sbjct: 162 FNTLITAHARAGRVADARSLFDEMP--ERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQ 219

Query: 144 DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
            V+PD+     VL+A A +   E Q   +H  +  +   +   +  AL+ +Y KC     
Sbjct: 220 GVRPDDTVLVGVLAACAQLGALE-QGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQL 278

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
                       VF+ M +++ L+WTTM+ G   +     +      M E+ GV      
Sbjct: 279 ---------GMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQM-ESSGV------ 322

Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLP 322
                          + D+  +   + AC ++GL   G+++   ++     KP  E    
Sbjct: 323 ---------------KPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHY-- 365

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
               +V L  + G ++EARD+  +MP + D + W A+++ 
Sbjct: 366 --GCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAG 403


>gi|326528959|dbj|BAJ97501.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 514

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/510 (40%), Positives = 307/510 (60%), Gaps = 6/510 (1%)

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN-NALVTLYWKCGKVNEARD 342
            Y + IS C+ +GL +    +  + +R       E++LP   N+   L      ++    
Sbjct: 8   AYNAAISRCSRAGLHQRALAL-LHEMRARGHRADEYTLPPALNSAALLRLPADALHSL-- 64

Query: 343 IFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG 402
           +        L   NA++ AY        A+++F+ M  R+++SWT +++GLA++   +  
Sbjct: 65  LLRAGLAAHLHVANALVDAYAKLSRHGAARAVFDEMPRRDVVSWTSLLTGLARSRSHDSA 124

Query: 403 LKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITM 462
           L+++  M   G  P ++A A A++SCAG  ALE GR +HA  V    D  LS GN+L++M
Sbjct: 125 LQVYRDMVAAGVGPDEFAVAAALSSCAGATALELGRSVHAAAVRLALDPFLSVGNSLVSM 184

Query: 463 YARCGVVEAANCVFNT--MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI 520
           YA+ G +  A  VF+   +   D ++W A+I    Q+G G  ++E+Y  M++ G  PD +
Sbjct: 185 YAKTGSLGEAKKVFDATRVDRCDPITWTALIVGYAQNGRGRESLEIYADMVRSGCRPDYV 244

Query: 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580
           TF+ +L AC+HAGLV  GR +F +M   +GI PG DHYA  +DLL RAG+  EA D+++ 
Sbjct: 245 TFIGLLFACSHAGLVDAGRAHFRSMQAEHGIAPGADHYACMVDLLGRAGRLDEAMDLLNR 304

Query: 581 LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA 640
              +  A +W+ALLA CR H N +L   AA  +++L P  A  YV+LSN+Y+  GRW D 
Sbjct: 305 STTRLDATVWKALLAACRTHRNAELAEHAAAMVWRLDPTDAVPYVMLSNLYSRAGRWGDV 364

Query: 641 ARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYV 700
           ARVR  M+ RG+ KEPGCSW+  +   H+F V+D  HP A  VY+ +E++   +R  GYV
Sbjct: 365 ARVRTSMKARGITKEPGCSWVAANGVTHLFYVEDRRHPRAAEVYRKVEEMTERIRGQGYV 424

Query: 701 PDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFM 760
            DT + L D   + +E  L+ HSE+LAVAFGL+ +P GA +RV KNLR+CGDCH A K +
Sbjct: 425 ADTAWALQDEGPEGREKGLAHHSERLAVAFGLLAVPAGAPIRVFKNLRVCGDCHAAIKMV 484

Query: 761 SKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           ++  GREIV+RD   FHH +DG CSCGDYW
Sbjct: 485 AQAYGREIVLRDSNCFHHMKDGACSCGDYW 514



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 169/389 (43%), Gaps = 73/389 (18%)

Query: 115 VFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHC 174
           V YNA I+  S       A+ L  +MR    + D +T    L++ AL+         +H 
Sbjct: 7   VAYNAAISRCSRAGLHQRALALLHEMRARGHRADEYTLPPALNSAALL---RLPADALHS 63

Query: 175 TVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTG 234
            ++++G      V NAL+  Y K          S  GAAR VFDEMP RD +SWT+++TG
Sbjct: 64  LLLRAGLAAHLHVANALVDAYAKL---------SRHGAARAVFDEMPRRDVVSWTSLLTG 114

Query: 235 YVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACAN 294
             ++   D+A +                    V+R+  M+   +  DEF   + +S+CA 
Sbjct: 115 LARSRSHDSALQ--------------------VYRD--MVAAGVGPDEFAVAAALSSCAG 152

Query: 295 SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFN--QMPERDL 352
           +    LG+ VHA  +R    P     L V N+LV++Y K G + EA+ +F+  ++   D 
Sbjct: 153 ATALELGRSVHAAAVRLALDPF----LSVGNSLVSMYAKTGSLGEAKKVFDATRVDRCDP 208

Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
           ++W                               T +I G AQNG G E L++++ M   
Sbjct: 209 ITW-------------------------------TALIVGYAQNGRGRESLEIYADMVRS 237

Query: 413 GFKPCDYAFAGAITSCAGLGALENGR-QLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
           G +P    F G + +C+  G ++ GR    +     G          ++ +  R G ++ 
Sbjct: 238 GCRPDYVTFIGLLFACSHAGLVDAGRAHFRSMQAEHGIAPGADHYACMVDLLGRAGRLDE 297

Query: 472 ANCVFN-TMPNVDSVSWNAMIAALGQHGN 499
           A  + N +   +D+  W A++AA   H N
Sbjct: 298 AMDLLNRSTTRLDATVWKALLAACRTHRN 326



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 177/402 (44%), Gaps = 77/402 (19%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           A ++H+ ++ +G     H+ N L+D Y K  +   AR +FDE+P+ D+V+ T+L+     
Sbjct: 58  ADALHSLLLRAGLAAHLHVANALVDAYAKLSRHGAARAVFDEMPRRDVVSWTSLL----- 112

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                LAR                     + SH+S    A++++RDM    V PD F   
Sbjct: 113 ---TGLAR---------------------SRSHDS----ALQVYRDMVAAGVGPDEFAVA 144

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           + LS+ A     E     +H   V+     F SV N+L+S+Y K  S         +G A
Sbjct: 145 AALSSCAGATALELG-RSVHAAAVRLALDPFLSVGNSLVSMYAKTGS---------LGEA 194

Query: 214 RRVFD--EMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
           ++VFD   +   D ++WT ++ GY +N      RE L+  ++                  
Sbjct: 195 KKVFDATRVDRCDPITWTALIVGYAQNGR---GRESLEIYAD------------------ 233

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
            M+    + D  T+  ++ AC+++GL   G+  H   ++ E    P         +V L 
Sbjct: 234 -MVRSGCRPDYVTFIGLLFACSHAGLVDAGR-AHFRSMQAEHGIAP--GADHYACMVDLL 289

Query: 332 WKCGKVNEARDIFNQMPER-DLVSWNAILSA---YVSAGLIDEAKSLFEAMRERNLLSWT 387
            + G+++EA D+ N+   R D   W A+L+A   + +A L + A ++   +   + + + 
Sbjct: 290 GRAGRLDEAMDLLNRSTTRLDATVWKALLAACRTHRNAELAEHAAAMVWRLDPTDAVPYV 349

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKP---CDYAFAGAIT 426
           ++ +  ++ G   +  ++ + M+  G      C +  A  +T
Sbjct: 350 MLSNLYSRAGRWGDVARVRTSMKARGITKEPGCSWVAANGVT 391


>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
 gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
          Length = 485

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/515 (40%), Positives = 311/515 (60%), Gaps = 37/515 (7%)

Query: 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
           ++ ++ TY +V+S     G    G++VH+ +    A    E  + V  ALV +Y KC  V
Sbjct: 6   VERNKVTYVTVLSGFTTPGSLEEGRRVHSRV----AGAGLEVDVIVGTALVNMYGKCQSV 61

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNG 397
                                          +EA++ FE +   N++SW+ M++  AQNG
Sbjct: 62  -------------------------------EEARAAFEKISRPNVVSWSAMLAAYAQNG 90

Query: 398 YGEEGLKLFSQM--RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSA 455
           +    L+L+ +M    +G  P    F   + +C+ LGAL  GR++HA +   G+D+ L  
Sbjct: 91  HARMALELYREMGSARKGMAPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVV 150

Query: 456 GNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI 515
            NAL+  Y RCG +  A  VF+ M   D +SW++MI+A  Q G    A+ELY +ML EG 
Sbjct: 151 CNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGT 210

Query: 516 LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAK 575
           LPD I F++VL AC+++G+V+    +F ++ G   + P  +HYA  +D+L RAGK  +A+
Sbjct: 211 LPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAE 270

Query: 576 DVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLG 635
           D++  +PF P   ++  +L+ C+++ +++ G  AAE +F+L P ++  Y+ L+N+Y+   
Sbjct: 271 DLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDPENSSPYITLANIYSAAK 330

Query: 636 RWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMR 695
           R  DAAR+RKLM +RG+KK+PGCSWIEV ++VH F+  D  HP+   +Y  +++L  +M+
Sbjct: 331 RPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGDKMHPQRDEIYAEIQRLGRQMK 390

Query: 696 KLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHN 755
           + GY  DTK VL D+E D+KE  L  HSEKLA+AFGL+  P GA +R++KNLR+C DCH 
Sbjct: 391 EAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAFGLISTPPGAPLRIVKNLRVCSDCHA 450

Query: 756 AFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           A K +SKV GREI+VRD  RFHHF DG CSC DYW
Sbjct: 451 ATKVISKVTGREILVRDTNRFHHFLDGMCSCNDYW 485



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 103/202 (50%), Gaps = 4/202 (1%)

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
           M + G +     +   ++     G+LE GR++H+++  +G +  +  G AL+ MY +C  
Sbjct: 1   MEIRGVERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQS 60

Query: 469 VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM--LKEGILPDRITFLTVL 526
           VE A   F  +   + VSW+AM+AA  Q+G+   A+ELY +M   ++G+ P+R+TF+T+L
Sbjct: 61  VEEARAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLL 120

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
            AC+  G + EGR+    +    G           ++   R G   +AK V D +  +  
Sbjct: 121 DACSFLGALAEGRKIHAAV-AERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMR-RRD 178

Query: 587 APIWEALLAGCRIHGNIDLGIQ 608
              W ++++     G +D  ++
Sbjct: 179 VISWSSMISAFAQRGRVDEAME 200



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 127/275 (46%), Gaps = 47/275 (17%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D++  T L+  Y    +V+ AR  F K  +   + V ++AM+ AY+ N +   A+EL+R+
Sbjct: 44  DVIVGTALVNMYGKCQSVEEARAAFEK--ISRPNVVSWSAMLAAYAQNGHARMALELYRE 101

Query: 140 M--RRDDVKPDNFTFTSVLSA---LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
           M   R  + P+  TF ++L A   L  + E  K    +H  V + G      V NAL++ 
Sbjct: 102 MGSARKGMAPNRVTFITLLDACSFLGALAEGRK----IHAAVAERGFDTDLVVCNALVNF 157

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           Y +C S         +G A+ VFD M  RD +SW++M++ + +   +D A E        
Sbjct: 158 YGRCGS---------LGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELY------ 202

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRL-GKQVHAYLLRTEA 313
                        HR   ML      D+  + SV+ AC+NSG+    G    + +  T+ 
Sbjct: 203 -------------HR---MLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQV 246

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP 348
           +PT E        +V +  + GK+ +A D+   MP
Sbjct: 247 EPTLEHY----ACMVDVLGRAGKLRDAEDLLRLMP 277



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 144/337 (42%), Gaps = 66/337 (19%)

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           V+ +  T+ +VLS        E +  ++H  V  +G  +   V  AL+++Y KC S    
Sbjct: 6   VERNKVTYVTVLSGFTTPGSLE-EGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQS---- 60

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                +  AR  F+++   + +SW+ M+  Y +N +   A E                  
Sbjct: 61  -----VEEARAAFEKISRPNVVSWSAMLAAYAQNGHARMALE------------------ 97

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
             ++RE+      +  +  T+ +++ AC+  G    G+++HA +    A+   +  L V 
Sbjct: 98  --LYREMGSARKGMAPNRVTFITLLDACSFLGALAEGRKIHAAV----AERGFDTDLVVC 151

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
           NALV  Y +CG + +A+ +F+ M  RD++SW++++SA+   G +DEA             
Sbjct: 152 NALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEA------------- 198

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
                             ++L+ +M  EG  P D  F   + +C+  G +E        +
Sbjct: 199 ------------------MELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSI 240

Query: 445 V-HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
           V  +  + +L     ++ +  R G +  A  +   MP
Sbjct: 241 VGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMP 277



 Score = 44.3 bits (103), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 63/117 (53%), Gaps = 3/117 (2%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R +HA +   GF     + N L++ Y +   L  A+ +FD + + D+++ +++I+A++ 
Sbjct: 132 GRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMISAFAQ 191

Query: 94  SDNVKLAREMFNK--TPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKP 147
              V  A E++++  +   + D + + +++ A S++    A+ + FR +  D  V+P
Sbjct: 192 RGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEP 248


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/668 (35%), Positives = 362/668 (54%), Gaps = 86/668 (12%)

Query: 133 AIELFR--DMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNA 190
           A+ELF   ++  D       T+ +++SA  + +   +   ++   +V SG      V+N 
Sbjct: 99  AMELFEILELEHDGFDVGGSTYDALVSA-CVGLRSIRGVKRVFNYMVNSGFEPDLYVMNR 157

Query: 191 LISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAA------ 244
           ++ V+VKC          LM  AR++FDEMPE+D  SW TM+ G+V +     A      
Sbjct: 158 VLFVHVKC---------GLMLDARKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLC 208

Query: 245 --REFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGK 302
              EF DG S                               T+T++I A A  GL ++G+
Sbjct: 209 MWEEFNDGRSR------------------------------TFTTMIRASAGLGLVQVGR 238

Query: 303 QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY 362
           Q+H+  L+            V+ AL+ +Y KCG                           
Sbjct: 239 QIHSCALKRGVGDDT----FVSCALIDMYSKCGS-------------------------- 268

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
                I++A  +F+ M E+  + W  +I+  A +GY EE L  + +MR  G K   +  +
Sbjct: 269 -----IEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSFYYEMRDSGAKIDHFTIS 323

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
             I  CA L +LE  +Q HA LV  GYD+ + A  AL+  Y++ G +E A  VFN M   
Sbjct: 324 IVIRICARLASLEYAKQAHAALVRRGYDTDIVANTALVDFYSKWGRMEDAWHVFNRMRRK 383

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
           + +SWNA+IA  G HG G  A+E++EQML+EG++P+ +TFL VLSAC+++GL + G   F
Sbjct: 384 NVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNHVTFLAVLSACSYSGLSERGWEIF 443

Query: 543 ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN 602
            +M   + + P   HYA  ++LL R G   EA ++I S PFKP+  +W  LL  CR+H N
Sbjct: 444 YSMSRDHKVKPRAMHYACMVELLGREGLLDEAYELIRSAPFKPTTNMWATLLTACRMHEN 503

Query: 603 IDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIE 662
           ++LG  AAE L+ + P     Y++L N+Y + G+  +AA V + ++ +G++  P C+WIE
Sbjct: 504 LELGKLAAENLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGVLQTLKRKGLRMLPACTWIE 563

Query: 663 VDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTH 722
           V  + + FL  D +H + + +Y+ +  +++E+ + GYV + K +L D++ +++   L  H
Sbjct: 564 VKKQSYAFLCGDKSHSQTKEIYEKVNNMMVEISRHGYVEENKALLPDVDEEEQR-ILKYH 622

Query: 723 SEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDG 782
           SEKLA+AFGL+  P    +++ +  R+CGDCH+A KF++ V GREIVVRD  RFHHFRDG
Sbjct: 623 SEKLAIAFGLINTPHWTPLQITQGHRVCGDCHSAIKFIAMVTGREIVVRDASRFHHFRDG 682

Query: 783 KCSCGDYW 790
            CSCGDYW
Sbjct: 683 SCSCGDYW 690



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 184/414 (44%), Gaps = 80/414 (19%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           + V  +M++SGF+P  +++NR++ ++ K   ++ AR LFDE+P+ D+ +  T        
Sbjct: 137 KRVFNYMVNSGFEPDLYVMNRVLFVHVKCGLMLDARKLFDEMPEKDMASWMT-------- 188

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
                                    MI  +  + N   A  LF  M  +     + TFT+
Sbjct: 189 -------------------------MIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTFTT 223

Query: 155 VLSA---LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           ++ A   L L+    +   Q+H   +K G G  T V  ALI +Y KC S         + 
Sbjct: 224 MIRASAGLGLV----QVGRQIHSCALKRGVGDDTFVSCALIDMYSKCGS---------IE 270

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A  VFD+MPE+  + W +++  Y  + Y + A  F   M ++                 
Sbjct: 271 DAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSFYYEMRDSGA--------------- 315

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                  ++D FT + VI  CA        KQ HA L+R       +  +  N ALV  Y
Sbjct: 316 -------KIDHFTISIVIRICARLASLEYAKQAHAALVRR----GYDTDIVANTALVDFY 364

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM-RER---NLLSWT 387
            K G++ +A  +FN+M  ++++SWNA+++ Y + G  +EA  +FE M RE    N +++ 
Sbjct: 365 SKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNHVTFL 424

Query: 388 VMISGLAQNGYGEEGLKLFSQM-RLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
            ++S  + +G  E G ++F  M R    KP    +A  +      G L+   +L
Sbjct: 425 AVLSACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYEL 478



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 8/205 (3%)

Query: 401 EGLKLFSQMRLE--GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
           E ++LF  + LE  GF      +   +++C GL ++   +++   +V+SG++  L   N 
Sbjct: 98  EAMELFEILELEHDGFDVGGSTYDALVSACVGLRSIRGVKRVFNYMVNSGFEPDLYVMNR 157

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           ++ ++ +CG++  A  +F+ MP  D  SW  MI      GN + A  L+  M +E     
Sbjct: 158 VLFVHVKCGLMLDARKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGR 217

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR--FIDLLCRAGKFSEAKD 576
             TF T++ A    GLV+ GR+   +     G+  G+D +     ID+  + G   +A  
Sbjct: 218 SRTFTTMIRASAGLGLVQVGRQ-IHSCALKRGV--GDDTFVSCALIDMYSKCGSIEDAHC 274

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHG 601
           V D +P K +   W +++A   +HG
Sbjct: 275 VFDQMPEKTTVG-WNSIIASYALHG 298



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 6/134 (4%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYAR----TLFDEIPQPDIVARTT 86
           S  A S +  M  SG K     I+ +I I  +   L YA+     L       DIVA T 
Sbjct: 300 SEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVRRGYDTDIVANTA 359

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           L+  YS    ++ A  +FN+  ++ ++ + +NA+I  Y ++  G  A+E+F  M R+ + 
Sbjct: 360 LVDFYSKWGRMEDAWHVFNR--MRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMI 417

Query: 147 PDNFTFTSVLSALA 160
           P++ TF +VLSA +
Sbjct: 418 PNHVTFLAVLSACS 431


>gi|356570490|ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Glycine max]
          Length = 582

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/626 (36%), Positives = 337/626 (53%), Gaps = 69/626 (11%)

Query: 167 KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDEL 226
           ++ +Q+H  V+K G      V + LI+ Y         S  +L  ++ ++FD  P +   
Sbjct: 24  RKGLQLHGQVIKLGFEAIPLVCHHLINFY---------SKTNLPHSSLKLFDSFPHKSAT 74

Query: 227 SWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYT 286
           +W+++++ + +ND    A  F                        +ML   +  D+ T  
Sbjct: 75  TWSSVISSFAQNDLPLPALRFFR----------------------RMLRHGLLPDDHT-- 110

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
             +   A S        +   L     K      + V ++LV  Y KCG VN AR     
Sbjct: 111 --LPTAAKSVAALSSLPLALSLHALSLKTAHHHDVFVGSSLVDTYAKCGDVNLAR----- 163

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
                                      +F+ M  +N++SW+ MI G +Q G  EE L LF
Sbjct: 164 --------------------------KVFDEMPHKNVVSWSGMIYGYSQMGLDEEALNLF 197

Query: 407 SQMRLEGF--KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
            +   + +  +  D+  +  +  C+     E G+Q+H     + +DSS    ++LI++Y+
Sbjct: 198 KRALEQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKTSFDSSCFVASSLISLYS 257

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           +CGVVE    VF  +   +   WNAM+ A  QH +  R  EL+E+M + G+ P+ ITFL 
Sbjct: 258 KCGVVEGGYKVFEEVKVRNLGMWNAMLIACAQHAHTGRTFELFEEMERVGVKPNFITFLC 317

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584
           +L AC+HAGLV++G   F  M   +GI PG  HYA  +DLL RAGK  EA  VI  +P +
Sbjct: 318 LLYACSHAGLVEKGEHCFGLMK-EHGIEPGSQHYATLVDLLGRAGKLEEAVLVIKEMPMQ 376

Query: 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVR 644
           P+  +W ALL GCRIHGN +L    A+++F++    +G  VLLSN YA  GRW++AAR R
Sbjct: 377 PTESVWGALLTGCRIHGNTELASFVADKVFEMGAVSSGIQVLLSNAYAAAGRWEEAARAR 436

Query: 645 KLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTK 704
           K+MRD+G+KKE G SW+E  N+VH F   D +H + + +Y+ LE+L  EM K GYV DT 
Sbjct: 437 KMMRDQGIKKETGLSWVEEGNRVHTFAAGDRSHGKTREIYEKLEELGEEMAKAGYVADTS 496

Query: 705 FVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVV 764
           FVL +++ D+K   +  HSE+LA+AFGL+  P    +RV+KNLR+CGDCH A KF+SK  
Sbjct: 497 FVLKEVDGDEKSQTIRYHSERLAIAFGLITFPPEWPIRVMKNLRVCGDCHTAIKFISKCT 556

Query: 765 GREIVVRDGKRFHHFRDGKCSCGDYW 790
           GR I+VRD  RFH F DGKC+CGDYW
Sbjct: 557 GRVIIVRDNNRFHRFEDGKCTCGDYW 582



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 110/438 (25%), Positives = 190/438 (43%), Gaps = 68/438 (15%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           LI  YS ++    + ++F+  P K   T  ++++I++++ N     A+  FR M R  + 
Sbjct: 48  LINFYSKTNLPHSSLKLFDSFPHKSATT--WSSVISSFAQNDLPLPALRFFRRMLRHGLL 105

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           PD+ T  +   ++A +       + +H   +K+       V ++L+  Y KC        
Sbjct: 106 PDDHTLPTAAKSVAALSSLPLA-LSLHALSLKTAHHHDVFVGSSLVDTYAKCGD------ 158

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              +  AR+VFDEMP ++ +SW+ M+ GY        ++  LD   E + +   AL   Y
Sbjct: 159 ---VNLARKVFDEMPHKNVVSWSGMIYGY--------SQMGLD--EEALNLFKRALEQDY 205

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                      I++++FT +SV+  C+ S LF LGKQVH    +T    + + S  V ++
Sbjct: 206 ----------DIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKT----SFDSSCFVASS 251

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           L++LY KCG V     +F ++  R+L  WNA+L A                         
Sbjct: 252 LISLYSKCGVVEGGYKVFEEVKVRNLGMWNAMLIA------------------------- 286

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
                  AQ+ +     +LF +M   G KP    F   + +C+  G +E G      +  
Sbjct: 287 ------CAQHAHTGRTFELFEEMERVGVKPNFITFLCLLYACSHAGLVEKGEHCFGLMKE 340

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGNGARAIE 505
            G +        L+ +  R G +E A  V   MP   + S W A++     HGN   A  
Sbjct: 341 HGIEPGSQHYATLVDLLGRAGKLEEAVLVIKEMPMQPTESVWGALLTGCRIHGNTELASF 400

Query: 506 LYEQMLKEGILPDRITFL 523
           + +++ + G +   I  L
Sbjct: 401 VADKVFEMGAVSSGIQVL 418



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 155/395 (39%), Gaps = 90/395 (22%)

Query: 56  LIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTV 115
           L+D Y K   +  AR +FDE+P  ++V+                                
Sbjct: 149 LVDTYAKCGDVNLARKVFDEMPHKNVVS-------------------------------- 176

Query: 116 FYNAMITAYSHNSNGHAAIELF-RDMRRD-DVKPDNFTFTSVL--SALALIVEEEKQCMQ 171
            ++ MI  YS       A+ LF R + +D D++ ++FT +SVL   + + + E  K   Q
Sbjct: 177 -WSGMIYGYSQMGLDEEALNLFKRALEQDYDIRVNDFTLSSVLRVCSASTLFELGK---Q 232

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H    K+       V ++LIS+Y KC          ++    +VF+E+  R+   W  M
Sbjct: 233 VHGLCFKTSFDSSCFVASSLISLYSKC---------GVVEGGYKVFEEVKVRNLGMWNAM 283

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           +    ++ +     E  + M E VGV  N +                     T+  ++ A
Sbjct: 284 LIACAQHAHTGRTFELFEEM-ERVGVKPNFI---------------------TFLCLLYA 321

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           C+++GL   G+     +     +P  +        LV L  + GK+ EA  +  +MP + 
Sbjct: 322 CSHAGLVEKGEHCFGLMKEHGIEPGSQH----YATLVDLLGRAGKLEEAVLVIKEMPMQP 377

Query: 352 LVS-WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI---SGLAQNGYGEEGLKLFS 407
             S W A+L+     G  + A  + + + E   +S  + +   +  A  G  EE  +   
Sbjct: 378 TESVWGALLTGCRIHGNTELASFVADKVFEMGAVSSGIQVLLSNAYAAAGRWEEAARARK 437

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
            MR +G K              GL  +E G ++H 
Sbjct: 438 MMRDQGIK-----------KETGLSWVEEGNRVHT 461



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 81/168 (48%), Gaps = 10/168 (5%)

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
           +L  G QLH Q++  G+++     + LI  Y++  +  ++  +F++ P+  + +W+++I+
Sbjct: 22  SLRKGLQLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFPHKSATTWSSVIS 81

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLT----VLSACNHAGLVKEGRRYFETMHGP 548
           +  Q+     A+  + +ML+ G+LPD  T  T    V +  +    +       +T H  
Sbjct: 82  SFAQNDLPLPALRFFRRMLRHGLLPDDHTLPTAAKSVAALSSLPLALSLHALSLKTAH-H 140

Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           + +  G    +  +D   + G  + A+ V D +P K +   W  ++ G
Sbjct: 141 HDVFVG----SSLVDTYAKCGDVNLARKVFDEMPHK-NVVSWSGMIYG 183


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/701 (33%), Positives = 366/701 (52%), Gaps = 54/701 (7%)

Query: 100 AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPDNFTFTSVLSA 158
           AR +F++ P   R    +   I+  +        +  F +M  + +  P+ F   +V+  
Sbjct: 64  ARGVFDERP--TRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRC 121

Query: 159 LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFD 218
            A + + E    ++H  ++++G  L   + NA++ +Y KC              ARRVF 
Sbjct: 122 CAGMGDVESG-KRVHGWMLRNGVHLDVVLCNAVLDMYAKC---------GQFERARRVFG 171

Query: 219 EMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV---HRELKMLM 275
            M ERD +SW   +   +++  +  + +  D        +WN +ISG +   H    +  
Sbjct: 172 AMAERDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSH 231

Query: 276 LR------IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVT 329
           LR      +  + +TY++         L  LG+Q+H  +L        E    V ++L+ 
Sbjct: 232 LRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVL----IAALEGDAFVRSSLMD 287

Query: 330 LYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           +Y KCG +  A  +F+         W+ +                    R+ N  +W+ M
Sbjct: 288 MYCKCGLLEAAASVFDH--------WSPL-------------------TRDMNF-AWSTM 319

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           ++G  QNG  EE L LF +M  EG     +       +CA +G +E GRQ+H  +    Y
Sbjct: 320 VAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWY 379

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
                  +A++ MYA+CG +E A  +F+     +   W +M+ +   HG G  AIEL+E+
Sbjct: 380 KLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFER 439

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
           M  E + P+ IT + VLSAC+H GLV EG  YF+ M   YGI P  +HY   +DL  R+G
Sbjct: 440 MTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRSG 499

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629
              +AK+ I+       A +W+ LL+ CR+H + +    A+E+L QL    AG+YV+LSN
Sbjct: 500 LLDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSYVMLSN 559

Query: 630 MYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQ 689
           +YA   +W D   +R  M++R V+K+PG SWI + N VH F+  D +HP++  +Y YLE+
Sbjct: 560 IYATNNKWHDTFELRVSMQERKVRKQPGRSWIHLKNTVHTFVAGDASHPQSAEIYAYLEK 619

Query: 690 LVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRI 749
           LV  ++++GY   T  V+HD+E +Q+E AL  HSEKLA+AFG++  P G  +R+ KNLR+
Sbjct: 620 LVERLKEIGYTSRTDLVVHDVEDEQRETALKFHSEKLAIAFGIISTPSGTPLRIFKNLRV 679

Query: 750 CGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           C DCH A K++S   GREIVVRD  RFHHF+D  CSC D+W
Sbjct: 680 CEDCHEAIKYISLATGREIVVRDLYRFHHFKDASCSCEDFW 720



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 116/478 (24%), Positives = 216/478 (45%), Gaps = 80/478 (16%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + VH  M+ +G      + N ++D+Y K  +   AR +F  + + D V+    I A   
Sbjct: 131 GKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAIGACIQ 190

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
           S ++  + ++F+++PL  RDT  +N +I+    + +   A+   R M +  V  +++T++
Sbjct: 191 SGDILGSMQLFDESPL--RDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTYS 248

Query: 154 S--VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           +  VL+ + L+ +  +   Q+H  V+ +       V ++L+ +Y KC          L+ 
Sbjct: 249 TAFVLAGMLLLPDLGR---QLHGRVLIAALEGDAFVRSSLMDMYCKC---------GLLE 296

Query: 212 AARRVFDEMP--ERD-ELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
           AA  VFD      RD   +W+TM+ GYV+N   + A +                      
Sbjct: 297 AAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFR------------------- 337

Query: 269 RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALV 328
              +ML   +  D FT TSV +ACAN G+   G+QVH  + +   K       P+ +A+V
Sbjct: 338 ---RMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYK----LDAPLASAIV 390

Query: 329 TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV 388
            +Y KCG + +AR IF++   +++  W ++L +Y S                        
Sbjct: 391 DMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYAS------------------------ 426

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS- 447
                  +G G   ++LF +M  E   P +    G +++C+ +G +  G     Q+    
Sbjct: 427 -------HGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEY 479

Query: 448 GYDSSLSAGNALITMYARCGVVE-AANCVFNTMPNVDSVSWNAMIAA--LGQHGNGAR 502
           G   S+   N ++ +Y R G+++ A N +     N +++ W  +++A  L QH   A+
Sbjct: 480 GIVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYAK 537



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 99/183 (54%), Gaps = 10/183 (5%)

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG-FK 415
           ++L  +V      +A+ +F+    R    WT+ ISG A+ G   +G++ F++M  EG   
Sbjct: 50  SVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEAT 109

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P  +  A  +  CAG+G +E+G+++H  ++ +G    +   NA++ MYA+CG  E A  V
Sbjct: 110 PNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRV 169

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           F  M   D+VSWN  I A  Q G+   +++L++    E  L D  ++ T++S     GL+
Sbjct: 170 FGAMAERDAVSWNIAIGACIQSGDILGSMQLFD----ESPLRDTTSWNTIIS-----GLM 220

Query: 536 KEG 538
           + G
Sbjct: 221 RSG 223


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 246/696 (35%), Positives = 388/696 (55%), Gaps = 62/696 (8%)

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
           D +  A  +F   P    + + +N M   ++ +S+  +A++L+  M    + P+ FTF  
Sbjct: 23  DGLPYAISVFETIPEP--NQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPF 80

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           +L + A   +  K+  Q+H  V+K G  L   V  +LIS+Y +            +  A+
Sbjct: 81  LLKSCAK-SKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQ---------NGRLEDAQ 130

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR----- 269
           +VFD    RD +S+T ++TGY    Y+++A++  D +     V+WNA+ISGY        
Sbjct: 131 KVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKK 190

Query: 270 --EL--KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
             EL  +M+   ++ DE T  +V+SACA SG   LG+QVH+++           +L + N
Sbjct: 191 ALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGS----NLKIVN 246

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
           AL+ LY KCG+V                               + A  L E +  ++++S
Sbjct: 247 ALIDLYSKCGEV-------------------------------ETACELLEGLSNKDVIS 275

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA--- 442
           W  +I G       +E L LF +M   G  P D      + +CA LGA++ GR +H    
Sbjct: 276 WNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYID 335

Query: 443 -QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGNG 500
            +L      ++ S   +LI MYA+CG ++AA  V ++     S+S WNAMI     HG  
Sbjct: 336 KKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRA 395

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
             A +++ +M K GI PD ITF+ +LSAC+H+G++  GR  F +M   Y I P  +HY  
Sbjct: 396 NAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGC 455

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
            IDLL  +G F EA+++I+++P +P   IW +LL  C+IHGN++LG   A++L ++ P +
Sbjct: 456 MIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPEN 515

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKE-PGCSWIEVDNKVHVFLVDDTAHPE 679
            G+YVLLSN+YA  G+W++  ++R L+ D+G+KK+ PGCS IE+D+ VH F++ D  HP+
Sbjct: 516 PGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQ 575

Query: 680 AQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGA 739
            + +Y  LE++ + + + G+VPDT  VL +ME + KE AL  HSEKLA+AFGL+    G 
Sbjct: 576 NREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGT 635

Query: 740 TVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKR 775
            + ++KNLR+C +CH A K +SK+  REI+ RD  R
Sbjct: 636 KLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTR 671



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 128/485 (26%), Positives = 216/485 (44%), Gaps = 72/485 (14%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +H H++  GF    ++   LI +Y ++ +L  A+ +FD     D+V+ T LI  Y++
Sbjct: 94  GQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITGYAS 153

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
              ++ A++MF++ P+K  D V +NAMI+ Y+   N   A+ELF++M + +VKPD  T  
Sbjct: 154 RGYIESAQKMFDEIPIK--DVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMA 211

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           +V+SA A     E    Q+H  +   G G    ++NALI +Y KC           +  A
Sbjct: 212 TVVSACAQSGSIELG-RQVHSWINDHGFGSNLKIVNALIDLYSKC---------GEVETA 261

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
             + + +  +D +SW T++ GY   +    A      M          L SG    ++ M
Sbjct: 262 CELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEM----------LRSGETPNDVTM 311

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
           L            S++ ACA+ G   +G+ +H Y+ +         +  +  +L+ +Y K
Sbjct: 312 L------------SILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAK 359

Query: 334 CGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           CG ++ A  + +     R L +WNA                               MI G
Sbjct: 360 CGDIDAAPQVSDSSAFNRSLSTWNA-------------------------------MIFG 388

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDS 451
            A +G       +FS+MR  G +P D  F G +++C+  G L+ GR +   +        
Sbjct: 389 FAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITP 448

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQM 510
            L     +I +    G+ + A  + NTMP   D V W +++ A   HGN    +EL E  
Sbjct: 449 KLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGN----LELGESF 504

Query: 511 LKEGI 515
            K+ I
Sbjct: 505 AKKLI 509



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 162/392 (41%), Gaps = 77/392 (19%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R VH+ +   GF     I+N LID+Y K  ++  A  L + +   D+++  TLI  Y+
Sbjct: 225 LGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYT 284

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
              ++ L +E                              A+ LF++M R    P++ T 
Sbjct: 285 ---HMNLYKE------------------------------ALLLFQEMLRSGETPNDVTM 311

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLF----TSVLNALISVYVKCVSSPFVSSRS 208
            S+L A A +   +     +H  + K   G+     +S+  +LI +Y KC          
Sbjct: 312 LSILPACAHLGAIDIG-RWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGD-------- 362

Query: 209 LMGAARRVFDEMPERDELS-WTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV 267
            + AA +V D       LS W  M+ G+  +   +AA +    M +N             
Sbjct: 363 -IDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKN------------- 408

Query: 268 HRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327
                     I+ D+ T+  ++SAC++SG+  LG+ +    +R +   TP+  L     +
Sbjct: 409 ---------GIEPDDITFVGLLSACSHSGMLDLGRNIFRS-MRQDYNITPK--LEHYGCM 456

Query: 328 VTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAM---RERNL 383
           + L    G   EA ++ N MP E D V W ++L A    G ++  +S  + +      N 
Sbjct: 457 IDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPENP 516

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
            S+ ++ +  A  G   E  K+ + +  +G K
Sbjct: 517 GSYVLLSNIYATAGKWNEVXKIRTLLNDKGMK 548


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/561 (38%), Positives = 341/561 (60%), Gaps = 17/561 (3%)

Query: 239 DYLDAAREFLDGMSENVGVAWNALISGYV---------HRELKMLMLRIQLDEFTYTSVI 289
           DY  A+R F    + NV + + ALI G+V             +ML   I  D +   S++
Sbjct: 98  DY--ASRIFQYTHNPNVYL-YTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASIL 154

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
            AC +    R G++VH+  L+          L +    + LY KCG++ +AR +F +MPE
Sbjct: 155 KACGSQLALREGREVHSRALKLGLSSNRLVRLRI----MELYGKCGELGDARRVFEEMPE 210

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
            D+V+   ++S+Y   GL++EA ++F  +R ++ + WT MI G  +N      L+ F  M
Sbjct: 211 -DVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGM 269

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
           + E  +P ++     +++C+ LGALE GR +H+ +     + +L  GNALI MY+RCG +
Sbjct: 270 QGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSI 329

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           + A  VF+ M + D +++N MI+ L  +G   +AIEL+  M+   + P  +TF+ VL+AC
Sbjct: 330 DEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNAC 389

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
           +H GLV  G + F +M   YG+ P  +HY   +DLL R G+  EA D+I ++   P   +
Sbjct: 390 SHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIM 449

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
              LL+ C++H N++LG Q A+ L       +GTYVLLS++YA+ G+W +AA+VR  M++
Sbjct: 450 LGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKE 509

Query: 650 RGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHD 709
            G++KEPGCS IEV+N++H FL+ D  HP  + +Y+ LE+L   +R  GY P+ + VL D
Sbjct: 510 AGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQD 569

Query: 710 MESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIV 769
           +E  +KE+AL+ HSE+LA+ +GL+       +RV+KNLR+C DCH+A K ++K+  R++V
Sbjct: 570 IEDGEKEWALAIHSERLAICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVV 629

Query: 770 VRDGKRFHHFRDGKCSCGDYW 790
           VRD  RFH+F +G CSCGDYW
Sbjct: 630 VRDRNRFHYFENGACSCGDYW 650



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 194/422 (45%), Gaps = 71/422 (16%)

Query: 113 DTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA----LALIVEEEKQ 168
           +   Y A+I  +  + N   AI+L+  M  D + PDN+   S+L A    LAL     ++
Sbjct: 111 NVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLAL-----RE 165

Query: 169 CMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSW 228
             ++H   +K G      V   ++ +Y KC           +G ARRVF+EMPE D ++ 
Sbjct: 166 GREVHSRALKLGLSSNRLVRLRIMELYGKC---------GELGDARRVFEEMPE-DVVAS 215

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLR---------IQ 279
           T M++ Y     ++ A      +     V W A+I G+V  E     L          ++
Sbjct: 216 TVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVR 275

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            +EFT   V+SAC+  G   +G+ VH+Y+ + E     E +L V NAL+ +Y +CG ++E
Sbjct: 276 PNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEI----ELNLFVGNALINMYSRCGSIDE 331

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
           A+ +F++M +RD++++N +                               ISGL+ NG  
Sbjct: 332 AQTVFDEMKDRDVITYNTM-------------------------------ISGLSMNGKS 360

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL-HAQLVHSGYDSSLSAGNA 458
            + ++LF  M     +P +  F G + +C+  G ++ G ++ H+     G +  +     
Sbjct: 361 RQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGC 420

Query: 459 LITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
           ++ +  R G +E A  +  TM    D +    +++A   H N    +EL EQ+ K  +L 
Sbjct: 421 MVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKN----LELGEQVAK--VLE 474

Query: 518 DR 519
           DR
Sbjct: 475 DR 476



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 190/404 (47%), Gaps = 46/404 (11%)

Query: 17  ASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEI 76
           AS L+ C  +  +     R VH+  +  G      +  R++++Y K  +L  AR +F+E+
Sbjct: 151 ASILKACGSQLALRE--GREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEM 208

Query: 77  PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIEL 136
           P+ D+VA T +I++YS    V+ A  +F++  ++ +DTV + AMI  +  N   + A+E 
Sbjct: 209 PE-DVVASTVMISSYSDQGLVEEAGAVFSR--VRRKDTVCWTAMIDGFVRNEEMNRALEA 265

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           FR M+ ++V+P+ FT   VLSA + +   E     +H  + K    L   V NALI++Y 
Sbjct: 266 FRGMQGENVRPNEFTIVCVLSACSQLGALEIG-RWVHSYMRKFEIELNLFVGNALINMYS 324

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           +C S         +  A+ VFDEM +RD +++ TM++G   N     A E          
Sbjct: 325 RCGS---------IDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFR------- 368

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG-KQVHAYLLRTEAKP 315
                           M+  R++    T+  V++AC++ GL   G K  H+       +P
Sbjct: 369 ---------------VMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEP 413

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA---YVSAGLIDEA 371
             E        +V L  + G++ EA D+   M    D +    +LSA   + +  L ++ 
Sbjct: 414 QIEHY----GCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQV 469

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
             + E   + +  ++ ++    A +G  +E  ++ ++M+  G +
Sbjct: 470 AKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQ 513


>gi|297739749|emb|CBI29931.3| unnamed protein product [Vitis vinifera]
          Length = 838

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 246/709 (34%), Positives = 360/709 (50%), Gaps = 129/709 (18%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           L+  YS   N+  A ++F+K  +  RD + YN++I+  +       A++LF  M+ D +K
Sbjct: 254 LVTLYSRWGNLIAAEQIFSK--MHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMK 311

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           PD  T  S+LSA A +    K   Q+H  V+K G      +  +L+ +YVKC        
Sbjct: 312 PDCVTVASLLSACASVGAGYKG-KQLHSYVIKMGMSSDLIIEGSLLDLYVKCFD------ 364

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              +  A   F      + + W  M+  Y +          L  +SE+  +         
Sbjct: 365 ---IETAHEYFLTTETENVVLWNVMLVAYGQ----------LGNLSESYWIF-------- 403

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
               L+M +  +  +++TY S++  C + G   LG+Q+H  ++    K   +F++ V + 
Sbjct: 404 ----LQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVI----KSGFQFNVYVCSV 455

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           L+ +Y K G+                               +D A+ + + +RE +++SW
Sbjct: 456 LIDMYAKHGE-------------------------------LDTARGILQRLREEDVVSW 484

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
           T MI+G  Q+    E LKLF +M  +G +  +  F+ AI++CAG+ AL  G+Q+HAQ   
Sbjct: 485 TAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYI 544

Query: 447 SGYDSSLSAGNAL-----ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGA 501
           SGY   LS GNAL     IT+Y++CG +E A   F  MP  + VSWNAMI    QHG G+
Sbjct: 545 SGYSEDLSIGNALASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGS 604

Query: 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF 561
            A+ L+E+M + G++P            NH   V E                        
Sbjct: 605 EAVSLFEEMKQLGLMP------------NHVTFVGE------------------------ 628

Query: 562 IDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621
                              +P +P A IW  LL+ C +H NI++G  AA  L +L P  +
Sbjct: 629 -------------------MPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDS 669

Query: 622 GTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQ 681
            TYVLLSNMYA  G+WD   R R++M+DRGVKKEPG SWIEV N +H F V D  HP A+
Sbjct: 670 ATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAE 729

Query: 682 AVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATV 741
            +Y+Y++ L     ++GYV D   +L+D+E +QK+     HSEKLAVAFGL+ L     +
Sbjct: 730 QIYEYIDDLNERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLLSLTNTMPI 789

Query: 742 RVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           RV+KNLR+C DCHN  KF+SK+  R IVVRD  RFHHF  G CSC DYW
Sbjct: 790 RVIKNLRVCNDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 838



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 155/588 (26%), Positives = 255/588 (43%), Gaps = 105/588 (17%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           A+ +HA +  SGF   + + +RLIDIY    ++  A  LFD+IP                
Sbjct: 29  AKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIP---------------- 72

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
           S NV                  F+N +I+           + LF  M  ++V PD  TF 
Sbjct: 73  SSNVS-----------------FWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFA 115

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           SVL A +      +   Q+H  ++  G G    V N LI +Y         S    +  A
Sbjct: 116 SVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLY---------SKNGHVDLA 166

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           + VF+ +  +D +SW  M++G  +N   D A      M ++  +                
Sbjct: 167 KLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIP--------------- 211

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
                    + ++SV+SAC    LF+LG+Q+H ++++     +  F   V NALVTLY +
Sbjct: 212 -------TPYVFSSVLSACTKIELFKLGEQLHGFIVKW-GLSSETF---VCNALVTLYSR 260

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
            G +  A  IF++M  RD +S+N+++S     G  D A                      
Sbjct: 261 WGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRA---------------------- 298

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL 453
                    L+LF +M+L+  KP     A  +++CA +GA   G+QLH+ ++  G  S L
Sbjct: 299 ---------LQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDL 349

Query: 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE 513
               +L+ +Y +C  +E A+  F T    + V WN M+ A GQ GN + +  ++ QM  E
Sbjct: 350 IIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIE 409

Query: 514 GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE 573
           G++P++ T+ ++L  C   G +  G +   T     G        +  ID+  + G+   
Sbjct: 410 GLMPNQYTYPSILRTCTSLGALDLGEQ-IHTQVIKSGFQFNVYVCSVLIDMYAKHGELDT 468

Query: 574 AKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621
           A+ ++  L  +     W A++AG   H   DL  +A  +LFQ M +  
Sbjct: 469 ARGILQRLR-EEDVVSWTAMIAGYTQH---DLFAEAL-KLFQEMENQG 511



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 185/436 (42%), Gaps = 83/436 (19%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y S L+ C     +   L   +H  +I SGF+   ++ + LID+Y K  +L  AR +   
Sbjct: 418 YPSILRTCTSLGAL--DLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQR 475

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           + + D+V+ T +IA Y+  D       +F +                          A++
Sbjct: 476 LREEDVVSWTAMIAGYTQHD-------LFAE--------------------------ALK 502

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNA----- 190
           LF++M    ++ DN  F+S +SA A I +   Q  Q+H     SG     S+ NA     
Sbjct: 503 LFQEMENQGIRSDNIGFSSAISACAGI-QALNQGQQIHAQSYISGYSEDLSIGNALASNV 561

Query: 191 LISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDG 250
           LI++Y KC S         +  A+R F EMPE++ +SW  M+TGY ++ Y   A    + 
Sbjct: 562 LITLYSKCGS---------IEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEE 612

Query: 251 MSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
           M + +G+  N +   +V        + I+ D   + +++SAC       +G+    +LL 
Sbjct: 613 MKQ-LGLMPNHVT--FVGE------MPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLE 663

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV------SW----NAILS 360
            E + +  + L  N   V+  W      + RD   QM +   V      SW    N+I +
Sbjct: 664 LEPEDSATYVLLSNMYAVSGKW------DYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHA 717

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
            +V   L   A+ ++E + + N            + GY ++   L + +  E   P  Y 
Sbjct: 718 FFVGDRLHPLAEQIYEYIDDLN--------ERAGEIGYVQDRYNLLNDVEQEQKDPTAYI 769

Query: 421 FAGAITSCAGLGALEN 436
            +  +    GL +L N
Sbjct: 770 HSEKLAVAFGLLSLTN 785



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 90/182 (49%), Gaps = 5/182 (2%)

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
           C   G+L + ++LHA++  SG+D     G+ LI +Y   G V+ A  +F+ +P+ +   W
Sbjct: 20  CFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFW 79

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN--HAGLVKEGRRYFETM 545
           N +I+ L      ++ + L+  M+ E + PD  TF +VL AC+   A      + + + +
Sbjct: 80  NKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKII 139

Query: 546 HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDL 605
           H  +G  P   +    IDL  + G    AK V + L  K S   W A+++G   +G  D 
Sbjct: 140 HHGFGSSPLVCN--PLIDLYSKNGHVDLAKLVFERLFLKDSVS-WVAMISGLSQNGREDE 196

Query: 606 GI 607
            I
Sbjct: 197 AI 198


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/574 (40%), Positives = 319/574 (55%), Gaps = 62/574 (10%)

Query: 220 MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQ 279
           MP    +SWT ++  Y     +DA         E +GVA  A  SG            ++
Sbjct: 1   MPHPSTVSWTALIAAY-----MDAGHAL-----EAIGVARRAFASG------------MR 38

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            D FT   V++ACA       G+ V A   + E      F   V  A + LY KCG+   
Sbjct: 39  PDSFTAVRVLTACARVADLETGEAVWAAARQEEGVAESVF---VATAALDLYVKCGE--- 92

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
                                       +++A+S+F+ M+ R+ ++W  M+ G A NG+ 
Sbjct: 93  ----------------------------MEKARSVFDEMKNRDAVAWGAMVGGYASNGHP 124

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS---AG 456
            E L LF  M++EG KP  Y   GA+++C  LGAL+ GRQ    +VH  +D  L     G
Sbjct: 125 REALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQA-VGMVH--WDEVLGNPVLG 181

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
            ALI MYA+CG    A  VF  M   D + WNAMI  LG  G+   A  L  QM K G+ 
Sbjct: 182 TALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGVK 241

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
            +  TF+ +L +C H GLV +GR+YF  M   Y I P  +HY   +DL  RAG   EA  
Sbjct: 242 LNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEAHQ 301

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636
           +I  +P   +A +W ALL GC+IH N DL   A +QL +L P ++G YV+LSN+Y+N GR
Sbjct: 302 LIGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLIRLEPWNSGNYVMLSNIYSNSGR 361

Query: 637 WDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRK 696
           W+DAA++R  M+ +G++K P  SW+E+D KVH F V D +HP +  +Y  L++L +EM+ 
Sbjct: 362 WEDAAKLRLEMKAKGIEKVPASSWVELDGKVHKFYVGDDSHPLSDKIYAKLDELGMEMKA 421

Query: 697 LGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNA 756
           +GY P T+ V+ D+E+++KE  L  HSEK+A+AF L+    G T+RV KNLR+C DCH+A
Sbjct: 422 MGYEPTTEVVMFDVENEEKENTLVHHSEKIAIAFSLITTEPGETIRVTKNLRVCTDCHSA 481

Query: 757 FKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            K +S++  REIVVRD  RFH FRDG CSC DYW
Sbjct: 482 IKLISRITCREIVVRDNNRFHCFRDGHCSCNDYW 515



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 163/401 (40%), Gaps = 68/401 (16%)

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMH 173
           TV + A+I AY    +   AI + R      ++PD+FT   VL+A A + + E       
Sbjct: 6   TVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETGEAVWA 65

Query: 174 CTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMT 233
               + G      V  A + +YVKC           M  AR VFDEM  RD ++W  M+ 
Sbjct: 66  AARQEEGVAESVFVATAALDLYVKC---------GEMEKARSVFDEMKNRDAVAWGAMVG 116

Query: 234 GYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACA 293
           GY  N +    RE LD                       M M   + D +T    +SAC 
Sbjct: 117 GYASNGH---PREALDLF-------------------FAMQMEGAKPDCYTVVGALSACT 154

Query: 294 NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV 353
             G   LG+Q    +   E    P     +  AL+ +Y KCG  +EA  +F QM ERD++
Sbjct: 155 RLGALDLGRQAVGMVHWDEVLGNP----VLGTALIDMYAKCGSTSEAWMVFQQMLERDII 210

Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
            WNA                               MI GL   G+ +    L  QM+  G
Sbjct: 211 VWNA-------------------------------MILGLGMTGHEKIAFALVGQMKKSG 239

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS-LSAGNALITMYARCGVVEAA 472
            K  D  F G + SC   G + +GRQ    + H    S  +     ++ +++R G++E A
Sbjct: 240 VKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEA 299

Query: 473 NCVFNTMPNV-DSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           + +   MP + ++V W A++     H N   A    +Q+++
Sbjct: 300 HQLIGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLIR 340



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 169/390 (43%), Gaps = 62/390 (15%)

Query: 43  SSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAA-----YSASDNV 97
           +SG +P      R++    +   L     ++    Q + VA +  +A      Y     +
Sbjct: 34  ASGMRPDSFTAVRVLTACARVADLETGEAVWAAARQEEGVAESVFVATAALDLYVKCGEM 93

Query: 98  KLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLS 157
           + AR +F++  +K RD V + AM+  Y+ N +   A++LF  M+ +  KPD +T    LS
Sbjct: 94  EKARSVFDE--MKNRDAVAWGAMVGGYASNGHPREALDLFFAMQMEGAKPDCYTVVGALS 151

Query: 158 ALALI--VEEEKQCMQM-HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           A   +  ++  +Q + M H   V     L T    ALI +Y KC S+           A 
Sbjct: 152 ACTRLGALDLGRQAVGMVHWDEVLGNPVLGT----ALIDMYAKCGSTS---------EAW 198

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
            VF +M ERD + W  M+ G               GM+ +  +A+ AL+        +M 
Sbjct: 199 MVFQQMLERDIIVWNAMILGL--------------GMTGHEKIAF-ALVG-------QMK 236

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQ-----VHAYLLRTEAKPTPEFSLPVNNALVT 329
              ++L++ T+  ++ +C ++GL   G+Q      H Y +     P  E        +V 
Sbjct: 237 KSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRI----SPRIEHY----GCMVD 288

Query: 330 LYWKCGKVNEARDIFNQMPE-RDLVSWNAILSA---YVSAGLIDEAKSLFEAMRERNLLS 385
           L+ + G + EA  +   MP   + V W A+L     + +A L + A      +   N  +
Sbjct: 289 LFSRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLIRLEPWNSGN 348

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           + ++ +  + +G  E+  KL  +M+ +G +
Sbjct: 349 YVMLSNIYSNSGRWEDAAKLRLEMKAKGIE 378


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/655 (34%), Positives = 371/655 (56%), Gaps = 49/655 (7%)

Query: 144 DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
           + KP ++   S LS+L  + +   Q  Q H  ++ +              + +  +++ F
Sbjct: 170 NTKPFHYVNHSKLSSLIDLCKSINQIKQTHANLITTA------------QITLPVIANKF 217

Query: 204 VSSRSL--MGAARRVFDEMPERDELSWTTMMTGYV--KNDYLDAAREFLDGMSENVGVAW 259
           + + +L  +  A ++FD++P+ D   + TM+  +    + YLD+   F   + +      
Sbjct: 218 LKNVALASLTYAHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRD------ 271

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
               SGY              + +++     AC N    R G+QV  + ++       + 
Sbjct: 272 ----SGYFP------------NRYSFVFAFGACGNGMCVREGEQVFTHAVKVGL----DG 311

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
           ++ V NAL+ ++ K G+V +AR++F+   +RD  SWN ++ AYV +G +  AK LF+ M 
Sbjct: 312 NVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDEMH 371

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
           ER+++SW+ +I+G  Q G   E L  F +M     KP +Y    A+ +C+ L AL+ G+ 
Sbjct: 372 ERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGKW 431

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV-SWNAMIAALGQHG 498
           +H  +       +     +LI MYA+CG +++A+ VF+       V  WNAMI     HG
Sbjct: 432 IHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHG 491

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
               AI ++E+M  E + P+++TF+ +L+AC+H  +VKEG+ YFE M   YGI P  +HY
Sbjct: 492 KPEEAINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMASDYGINPEIEHY 551

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
              +DLL R+G   +++++I S+P  P   IW ALL  CRI+ +++ G +    + ++ P
Sbjct: 552 GCMVDLLSRSGHLKDSEEMILSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKEIDP 611

Query: 619 HHAGTYVLLSNMYANLGRWDDAARVR---KLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
           +H G  VLL N+Y+  GRW++A  VR   ++  DR  KK PG S IE++   H FLV D 
Sbjct: 612 NHIGCNVLLGNIYSTSGRWNEARMVREKNEINSDR--KKIPGFSSIELNGVFHEFLVGDR 669

Query: 676 AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQ-KEYALSTHSEKLAVAFGLMK 734
           +HP+++ +Y +L++++ +++  GYVP+   VL D + ++ KE ALS HSEKLA+AFGLM 
Sbjct: 670 SHPQSREIYSFLDEMISKLKIAGYVPELGEVLLDFDDEEDKETALSVHSEKLAIAFGLMN 729

Query: 735 LPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
              G  +R++KNLR+CGDCH A KF+SKV  R I+VRD  R+HHF+DG CSC DY
Sbjct: 730 TAPGTPIRIVKNLRVCGDCHQATKFISKVYDRVIIVRDRMRYHHFKDGICSCKDY 784



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 181/413 (43%), Gaps = 71/413 (17%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF 73
           ++ +S + LC   N I     +  HA++I++       I N+ +     +  L YA  LF
Sbjct: 180 SKLSSLIDLCKSINQI-----KQTHANLITTAQITLPVIANKFLKNVALA-SLTYAHKLF 233

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
           D+IPQPD+    T+I ++S S +  L                                 +
Sbjct: 234 DQIPQPDLFIYNTMIKSHSMSPHSYL--------------------------------DS 261

Query: 134 IELFRDMRRDD-VKPDNFTFTSVLSAL--ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNA 190
           I +FR + RD    P+ ++F     A    + V E +Q        VK G      V+NA
Sbjct: 262 IAVFRSLIRDSGYFPNRYSFVFAFGACGNGMCVREGEQVFT---HAVKVGLDGNVFVVNA 318

Query: 191 LISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDG 250
           LI ++ K            +  AR VFD   +RD  SW TM+  YV +  +  A+E  D 
Sbjct: 319 LIGMFGKW---------GRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDE 369

Query: 251 MSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLG 301
           M E   V+W+ +I+GYV             KML   ++ +E+T  S ++AC+N      G
Sbjct: 370 MHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQG 429

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILS 360
           K +H Y+ R   K           +L+ +Y KCG+++ A  +F++   +R +  WNA++ 
Sbjct: 430 KWIHVYIRRDNIKMNDRLLA----SLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIG 485

Query: 361 AYVSAGLIDEAKSLFEAMR----ERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
            +   G  +EA ++FE M+      N +++  +++  +     +EG   F  M
Sbjct: 486 GFAMHGKPEEAINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELM 538



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 154/352 (43%), Gaps = 39/352 (11%)

Query: 12  LANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYART 71
             NRY+         N +       V  H +  G      ++N LI ++ K  ++  AR 
Sbjct: 275 FPNRYSFVFAFGACGNGMCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARN 334

Query: 72  LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           +FD     D  +  T+I AY  S N+ LA+E+F++  +  RD V ++ +I  Y       
Sbjct: 335 VFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDE--MHERDVVSWSTIIAGYVQVGCFM 392

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
            A++ F  M + +VKP+ +T  S L+A + +V  + Q   +H  + +    +   +L +L
Sbjct: 393 EALDFFHKMLQSEVKPNEYTMVSALAACSNLVALD-QGKWIHVYIRRDNIKMNDRLLASL 451

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMP-ERDELSWTTMMTGYVKNDYLDAAREFLDG 250
           I +Y KC           + +A  VF E   +R    W  M+ G+  +   + A    + 
Sbjct: 452 IDMYAKC---------GEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFE- 501

Query: 251 MSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
                                KM + ++  ++ T+ ++++AC++  + + GK  +  L+ 
Sbjct: 502 ---------------------KMKVEKVSPNKVTFIALLNACSHGYMVKEGKS-YFELMA 539

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
           ++    PE  +     +V L  + G + ++ ++   MP   D+  W A+L+A
Sbjct: 540 SDYGINPE--IEHYGCMVDLLSRSGHLKDSEEMILSMPMAPDVAIWGALLNA 589


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/493 (41%), Positives = 300/493 (60%), Gaps = 36/493 (7%)

Query: 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAI 358
           RLG+ +H+ ++R+         + V N+L+ LY  CG V  A  +F++MPE+DLV+WN++
Sbjct: 5   RLGETIHSVVIRSGFGSL----IYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 60

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
           ++ +                               A+NG  EE L L+++M  +G KP  
Sbjct: 61  INGF-------------------------------AENGKPEEALALYTEMNSKGIKPDG 89

Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478
           +     +++CA +GAL  G+++H  ++  G   +L + N L+ +YARCG VE A  +F+ 
Sbjct: 90  FTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDE 149

Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK-EGILPDRITFLTVLSACNHAGLVKE 537
           M + +SVSW ++I  L  +G G  AIEL++ M   EG+LP  ITF+ +L AC+H G+VKE
Sbjct: 150 MVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKE 209

Query: 538 GRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
           G  YF  M   Y I P  +H+   +DLL RAG+  +A + I S+P +P+  IW  LL  C
Sbjct: 210 GFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGAC 269

Query: 598 RIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPG 657
            +HG+ DL   A  Q+ QL P+H+G YVLLSNMYA+  RW D  ++RK M   GVKK PG
Sbjct: 270 TVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPG 329

Query: 658 CSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEY 717
            S +EV N+VH FL+ D +HP++ A+Y  L+++   +R  GYVP    V  D+E ++KE 
Sbjct: 330 HSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKEN 389

Query: 718 ALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFH 777
           A+  HSEK+A+AF L+  P  + + V+KNLR+C DCH A K +SKV  REIVVRD  RFH
Sbjct: 390 AVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFH 449

Query: 778 HFRDGKCSCGDYW 790
           HF++G CSC DYW
Sbjct: 450 HFKNGSCSCQDYW 462



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 151/331 (45%), Gaps = 69/331 (20%)

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H  V++SG G    V N+L+ +Y  C           + +A +VFD+MPE+D ++W ++
Sbjct: 10  IHSVVIRSGFGSLIYVQNSLLHLYANCGD---------VASAYKVFDKMPEKDLVAWNSV 60

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           + G+ +N   + A      M+                         I+ D FT  S++SA
Sbjct: 61  INGFAENGKPEEALALYTEMNSK----------------------GIKPDGFTIVSLLSA 98

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
           CA  G   LGK+VH Y+++         +L  +N L+ LY +CG+V EA+ +F++M +++
Sbjct: 99  CAKIGALTLGKRVHVYMIKVGLTR----NLHSSNVLLDLYARCGRVEEAKTLFDEMVDKN 154

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR- 410
            VSW                               T +I GLA NG+G+E ++LF  M  
Sbjct: 155 SVSW-------------------------------TSLIVGLAVNGFGKEAIELFKYMES 183

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVV 469
            EG  PC+  F G + +C+  G ++ G +   ++      +  +     ++ + AR G V
Sbjct: 184 TEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQV 243

Query: 470 EAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
           + A     +MP   + V W  ++ A   HG+
Sbjct: 244 KKAYEYIKSMPMQPNVVIWRTLLGACTVHGD 274



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 129/293 (44%), Gaps = 37/293 (12%)

Query: 81  IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
           I  + +L+  Y+   +V  A ++F+K P K  D V +N++I  ++ N     A+ L+ +M
Sbjct: 23  IYVQNSLLHLYANCGDVASAYKVFDKMPEK--DLVAWNSVINGFAENGKPEEALALYTEM 80

Query: 141 RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVS 200
               +KPD FT  S+LSA A I        ++H  ++K G        N L+ +Y +C  
Sbjct: 81  NSKGIKPDGFTIVSLLSACAKI-GALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARC-- 137

Query: 201 SPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWN 260
                    +  A+ +FDEM +++ +SWT+++ G   N +   A E    M    G+   
Sbjct: 138 -------GRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPC 190

Query: 261 ALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
                                E T+  ++ AC++ G+ + G +   Y  R   +   E  
Sbjct: 191 ---------------------EITFVGILYACSHCGMVKEGFE---YFRRMREEYKIEPR 226

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAK 372
           +     +V L  + G+V +A +    MP + ++V W  +L A    G  D A+
Sbjct: 227 IEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAE 279



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 4/133 (3%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           +L + VH +MI  G     H  N L+D+Y +  ++  A+TLFDE+   + V+ T+LI   
Sbjct: 106 TLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGL 165

Query: 92  SASDNVKLAREMFN---KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKP 147
           + +   K A E+F     T   +   + +  ++ A SH        E FR MR +  ++P
Sbjct: 166 AVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEP 225

Query: 148 DNFTFTSVLSALA 160
               F  ++  LA
Sbjct: 226 RIEHFGCMVDLLA 238


>gi|296090522|emb|CBI40853.3| unnamed protein product [Vitis vinifera]
          Length = 749

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/647 (35%), Positives = 354/647 (54%), Gaps = 74/647 (11%)

Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
           G   S+ N LI  Y+KC S  +         AR+VFDE+P R  ++W +M+  Y++N   
Sbjct: 108 GFHHSLGNKLIDAYLKCGSVVY---------ARKVFDEVPHRHIVAWNSMIASYIRNG-- 156

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
             ++E +D                      +M+   I  DEFT++SV  A ++ GL   G
Sbjct: 157 -RSKEAIDIYQ-------------------RMVPDGILPDEFTFSSVFKAFSDLGLVHEG 196

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
           ++ H   +      +  F   V +ALV +Y K GK+ +AR + +Q+  +D+V + A++  
Sbjct: 197 QRAHGQSVVLGVGVSNVF---VGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVG 253

Query: 362 YVSAGLIDEAKSLFEAMRERNL-------------------------------------- 383
           Y   G   E+  +F  M ++ +                                      
Sbjct: 254 YSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESA 313

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
           ++WT +I GL QNG  E  L  F QM      P  +  +  + +C+ L  LE G+Q+HA 
Sbjct: 314 VTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAI 373

Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
           ++  G D     G ALI  Y +CG  E A  VFN +  VD VS N+MI +  Q+G G  A
Sbjct: 374 VMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEA 433

Query: 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563
           ++L+  M   G+ P+ +T+L VLSACN+AGL++EG   F +      I   +DHYA  +D
Sbjct: 434 LQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYACMVD 493

Query: 564 LLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623
           LL RAG+  EA+ +I+ +       IW  LL+ CRIHG++++  +   ++  L P   GT
Sbjct: 494 LLGRAGRLKEAEMLINQVNI-SDVVIWRTLLSACRIHGDVEMAKRVMNRVIDLAPEDGGT 552

Query: 624 YVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAV 683
           +VLLSN+YA+ G W     ++  MR+  +KK P  SW++V+ ++H F+  D +HP  + +
Sbjct: 553 HVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIHTFMAGDWSHPNFRDI 612

Query: 684 YKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLP-GGATVR 742
            + LE+L+ ++++LGYVPDT+FVL D++ ++K  +L  HSEKLAVAF L +      T+R
Sbjct: 613 REKLEELIEKVKELGYVPDTRFVLQDLDEEKKIRSLYYHSEKLAVAFALWRSNYKNTTIR 672

Query: 743 VLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
           +LKNLR+CGDCH   KF+SK+VGR+I+ RD KRFHHFR+G CSCGDY
Sbjct: 673 ILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRFHHFRNGLCSCGDY 719



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 137/544 (25%), Positives = 217/544 (39%), Gaps = 153/544 (28%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y+S +Q C     IT      + +H +  GF     + N+LID Y K   +VYAR +FDE
Sbjct: 81  YSSLIQQCIGIKSITD--ITKIQSHALKRGF--HHSLGNKLIDAYLKCGSVVYARKVFDE 136

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P   IVA  ++IA                                 +Y  N     AI+
Sbjct: 137 VPHRHIVAWNSMIA---------------------------------SYIRNGRSKEAID 163

Query: 136 LFRDMRRDDVKPDNFTFTSVLSA---LALIVEEEKQCMQMHCTVVKSGTGLFTS-VLNAL 191
           +++ M  D + PD FTF+SV  A   L L+ E ++     H   V  G G+    V +AL
Sbjct: 164 IYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQRA----HGQSVVLGVGVSNVFVGSAL 219

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK-------------- 237
           + +Y K            M  AR V D++  +D + +T ++ GY                
Sbjct: 220 VDMYAKF---------GKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNM 270

Query: 238 -------NDY--------------LDAAREFLDGMSENVG----VAWNALISGYVH---R 269
                  N+Y              L + R  + G+    G    V W ++I G V     
Sbjct: 271 TKKGIEANEYTLSSVLVCCGNLEDLTSGR-LIHGLIVKAGLESAVTWTSVIVGLVQNGRE 329

Query: 270 ELKMLMLR------IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
           E+ +L  R      I  + FT +SV+ AC++  +   GKQ+HA +++        F L +
Sbjct: 330 EIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMK--------FGLDI 381

Query: 324 NN----ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
           +     AL+  Y KCG    AR +FN + E D+VS N+++ +Y   G   EA  LF  M+
Sbjct: 382 DKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMK 441

Query: 380 ----ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
               E N ++W  ++S     G  EEG  +FS  R  G                      
Sbjct: 442 DTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSG---------------------- 479

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
                + +L    Y         ++ +  R G ++ A  + N +   D V W  +++A  
Sbjct: 480 -----NIELTKDHY-------ACMVDLLGRAGRLKEAEMLINQVNISDVVIWRTLLSACR 527

Query: 496 QHGN 499
            HG+
Sbjct: 528 IHGD 531


>gi|302763721|ref|XP_002965282.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
 gi|300167515|gb|EFJ34120.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
          Length = 721

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 247/791 (31%), Positives = 399/791 (50%), Gaps = 126/791 (15%)

Query: 13  ANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTL 72
           ++ +A+ ++ C   N ++      +H  +  +G     ++ N L+ +  K   L  AR++
Sbjct: 44  SDSFAAAIRSCKDSNSVSI-----IHQKITRAGLGSSAYLNNLLVLMLAKHGSLCEARSI 98

Query: 73  FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
           FD I   +I +                                 +N +I+AY+H  +   
Sbjct: 99  FDAIQHKNIFS---------------------------------WNIIISAYAHRGHPST 125

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL--NA 190
           A+ LF  M   DV P   TF + LSA + + + ++   ++H  + K+  G+  SV+   A
Sbjct: 126 ALHLFAKM---DVPPTAMTFATALSACSSLGDLQRG-REIHARI-KASRGIRPSVILDTA 180

Query: 191 LISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDG 250
           + S+Y KC           +  A+ VFD +P ++ +SW  ++  Y +             
Sbjct: 181 IFSMYAKCGD---------LSTAKSVFDRIPAKNVVSWNALIAAYAQ------------- 218

Query: 251 MSENVGVAWNALISGYVHREL-----KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
                        SG+ H +      KM    ++    T+  V+ AC +       +++H
Sbjct: 219 -------------SGHSHHQALDLFEKMAEHGVRPCRATFVGVLGACNDVTSL---EKIH 262

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365
           A ++ T  +      + V NAL+ +Y KCG +  ARDIF +M  RD VS N +++ +   
Sbjct: 263 ARIVETGLQFDVR-DVGVQNALLNMYAKCGSLEVARDIFRKMQRRDQVSMNVMIATF--- 318

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425
                                       AQ G G+E +++F +M LEG    D  FA  I
Sbjct: 319 ----------------------------AQQGLGKESIQVFREMDLEGLPQDDTTFASVI 350

Query: 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGN-----ALITMYARCGVVEAANCVFNTMP 480
           T+C+  GALE G+++H ++V           N     AL++MY +CG +E A  VF  M 
Sbjct: 351 TACSCCGALEFGKRIHKRVVEPVLGRKCCLPNVVVETALVSMYGKCGTLEQAKAVFKAMT 410

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
             +SVSWNAM+AA    G G  A         EG+  D  +F++VL AC+H+G+++    
Sbjct: 411 TKNSVSWNAMLAACAHQGQGDEAAAFLRAAACEGVELDSASFISVLIACSHSGMLEVAYD 470

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
           +F+ M   + + P  ++Y   +DLL R+G+  +A ++++S+PF P A  W  LL GCR+ 
Sbjct: 471 HFQLMLSDFDLVPAAENYRCMVDLLARSGRLGDADELMNSMPFSPDAIAWRTLLGGCRVQ 530

Query: 601 GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKK-EPGCS 659
           G+++    AAEQ F L P +   Y LLS++Y+  G+ D+   +R  M++RG++K  PG S
Sbjct: 531 GSLENAASAAEQAFNLEPQNTAPYTLLSSLYSATGKKDELVELRSSMKERGLRKLVPGRS 590

Query: 660 WIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYAL 719
            IEV  +VH F+  D++HP+   + + L+ L +E+++ G+VP T  V+HD++++ KE  L
Sbjct: 591 VIEVHGRVHEFVAGDSSHPQIDKILRELDILNVELKQAGFVPSTDGVVHDLKTEDKEEIL 650

Query: 720 STHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHF 779
           + HSEKLAVAFGL+    G  + VLKNLR+C DCH A K +SK+  R I VRD  RFH F
Sbjct: 651 ALHSEKLAVAFGLISTKSGIPLLVLKNLRVCSDCHGAIKLISKLRSRVITVRDANRFHRF 710

Query: 780 RDGKCSCGDYW 790
           + G CSCGDYW
Sbjct: 711 QSGTCSCGDYW 721



 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 90/284 (31%), Positives = 140/284 (49%), Gaps = 53/284 (18%)

Query: 268 HRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327
           H  L  L   IQ D F   + I +C +S    +   +H  + R         S  +NN L
Sbjct: 32  HDPLDSLEREIQSDSFA--AAIRSCKDSNSVSI---IHQKITRAGLGS----SAYLNNLL 82

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWT 387
           V +  K G + EAR IF+ +  +++ SWN I+SAY                         
Sbjct: 83  VLMLAKHGSLCEARSIFDAIQHKNIFSWNIIISAY------------------------- 117

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447
                 A  G+    L LF++M +    P    FA A+++C+ LG L+ GR++HA++  S
Sbjct: 118 ------AHRGHPSTALHLFAKMDV---PPTAMTFATALSACSSLGDLQRGREIHARIKAS 168

Query: 448 -GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG-ARAIE 505
            G   S+    A+ +MYA+CG +  A  VF+ +P  + VSWNA+IAA  Q G+   +A++
Sbjct: 169 RGIRPSVILDTAIFSMYAKCGDLSTAKSVFDRIPAKNVVSWNALIAAYAQSGHSHHQALD 228

Query: 506 LYEQMLKEGILPDRITFLTVLSACN--------HAGLVKEGRRY 541
           L+E+M + G+ P R TF+ VL ACN        HA +V+ G ++
Sbjct: 229 LFEKMAEHGVRPCRATFVGVLGACNDVTSLEKIHARIVETGLQF 272


>gi|225432410|ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
           mitochondrial-like [Vitis vinifera]
          Length = 623

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/622 (36%), Positives = 356/622 (57%), Gaps = 27/622 (4%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           T+ I A +    +  AR +F++ P K  DTV +NAM+ +YS       A+ LF  MR  +
Sbjct: 9   TSKIVALAKLGRITSARRLFDEMPHK--DTVAWNAMLASYSQLGLHQQALCLFHHMRIAN 66

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
            +PD FTFT+ LSA A +  E ++ M++H  VV SG      V N+LI +Y KC+S+   
Sbjct: 67  SRPDRFTFTATLSACAGL-GELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSAT-- 123

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                  +ARRVF+EM   +E+SW +++  Y  +   D AR   DGM + V +AWN +IS
Sbjct: 124 -------SARRVFEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMIS 176

Query: 265 GYVH---REL------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           GY      EL      KM    +Q D++T++++++A         G  +H +++++    
Sbjct: 177 GYGQCGDVELCLGLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWVK 236

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
             E    V+N++++ Y K G  ++   +F  +     VSWNA++ A++  G   EA  +F
Sbjct: 237 AVE----VSNSILSFYSKLGCKDDVMKVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVF 292

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
           +   E+N++SWT MI+G A+NG+GE+ L  F +M     +P D+ F   + +C+ L  L 
Sbjct: 293 QLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQPDDFTFGAVLHACSSLATLG 352

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
           +G+ +H  ++H G+ + +  GN L+ MYA+CG ++ +N  F  +   D VSWNAM+  LG
Sbjct: 353 HGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQGSNTAFKEILGKDLVSWNAMLFGLG 412

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
            HG+  +A+ELYE+M+  G+ PD++TF+ +L  C+H+GL+++G+  FE+M   YG+    
Sbjct: 413 MHGHATQALELYEEMVASGMKPDKVTFIGLLMTCSHSGLIEKGQALFESMVSVYGLSQET 472

Query: 556 DHYARFIDLLCRAGKFSEAKDVID--SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
           +H    +DLL R G  ++A++++D  S   +    + EALL  C  H  + +G    E L
Sbjct: 473 EHVVCMVDLLGRGGYLAQARELVDEYSRTGRAETSLPEALLGACFAHSEVRMGANLGEYL 532

Query: 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVD 673
               P    +YVLLSN+Y   G+W +A  VRK M D GVKK PGCSWIEV NKV VF+  
Sbjct: 533 KVFEPQKEMSYVLLSNLYCVSGQWKEAEMVRKTMTDHGVKKMPGCSWIEVRNKVTVFVAG 592

Query: 674 DTAHPEAQAVYKYLEQLVLEMR 695
           + +HP  + + K L  L  EMR
Sbjct: 593 NHSHPYMEELCKILNFLKFEMR 614



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 148/567 (26%), Positives = 246/567 (43%), Gaps = 123/567 (21%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           +HA ++ SG +    + N LID+Y K L    AR +F+E+   + V+  +L+ AY++S  
Sbjct: 93  IHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSARRVFEEMSIMNEVSWCSLLFAYTSSGL 152

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
             +AR +F+  P K+   + +N MI+ Y    +    + LF+ MR D ++PD +TF++++
Sbjct: 153 FDVARVVFDGMPKKVE--IAWNIMISGYGQCGDVELCLGLFKKMREDSLQPDQWTFSALV 210

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC-----VSSPF-------- 203
           +AL  + E     M MH  ++KSG      V N+++S Y K      V   F        
Sbjct: 211 NALCELQEPSYGYM-MHGFIIKSGWVKAVEVSNSILSFYSKLGCKDDVMKVFESIGILTQ 269

Query: 204 VSSRSLMGA---------ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           VS  +++ A         A  VF   PE++ +SWT+M+TGY +N + + A  F   M EN
Sbjct: 270 VSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMEN 329

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
                                  IQ D+FT+ +V+ AC++      GK +H  ++     
Sbjct: 330 ----------------------HIQPDDFTFGAVLHACSSLATLGHGKMIHGSIIHYGFH 367

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
                 + V N LV +Y KCG +  +   F ++  +DLVSWNA                 
Sbjct: 368 AY----VDVGNGLVNMYAKCGDIQGSNTAFKEILGKDLVSWNA----------------- 406

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
                         M+ GL  +G+  + L+L+ +M   G KP    F G + +C+  G +
Sbjct: 407 --------------MLFGLGMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCSHSGLI 452

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
           E G+ L                 +++++Y      E   C               M+  L
Sbjct: 453 EKGQALF---------------ESMVSVYGLSQETEHVVC---------------MVDLL 482

Query: 495 GQHGNGARAIELYEQMLKEG----ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
           G+ G  A+A EL ++  + G     LP+      +L AC     V+ G    E +     
Sbjct: 483 GRGGYLAQARELVDEYSRTGRAETSLPE-----ALLGACFAHSEVRMGANLGEYL--KVF 535

Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDV 577
            P  E  Y    +L C +G++ EA+ V
Sbjct: 536 EPQKEMSYVLLSNLYCVSGQWKEAEMV 562



 Score = 59.7 bits (143), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 49/90 (54%)

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
           S L    + I   A+ G + +A  +F+ MP+ D+V+WNAM+A+  Q G   +A+ L+  M
Sbjct: 3   SHLFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHM 62

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRR 540
                 PDR TF   LSAC   G ++ G +
Sbjct: 63  RIANSRPDRFTFTATLSACAGLGELRRGMK 92


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/520 (40%), Positives = 305/520 (58%), Gaps = 36/520 (6%)

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
           +ML+ RI    +T+TSVI ACA+  L  +G  VH+++       +  F   V  AL+  Y
Sbjct: 98  RMLLSRIVPSTYTFTSVIKACADLSLLCIGTLVHSHVF-VSGYASDSF---VQAALIAFY 153

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            K      AR +F++MP+                               R++++W  MIS
Sbjct: 154 AKSCTPRVARKVFDEMPQ-------------------------------RSIVAWNSMIS 182

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
           G  QNG   E +++F++MR    +P    F   +++C+ LG+L+ G  LH  +V SG   
Sbjct: 183 GYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITM 242

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
           ++    +L+ M++RCG V  A  VF +M   + V W AMI+  G HG G  A+E++ +M 
Sbjct: 243 NVVLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMK 302

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571
             G++P+ +TF+ VLSAC HAGL+ EGR  F +M   YG+ PG +H+   +D+  R G  
Sbjct: 303 ARGVVPNSVTFVAVLSACAHAGLIDEGRSVFASMKQEYGVVPGVEHHVCMVDMFGRGGLL 362

Query: 572 SEAKDVIDSLPFKPSAP-IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630
           +EA   +  L      P +W A+L  C++H N DLG++ AE L    P + G YVLLSNM
Sbjct: 363 NEAYQFVKGLNSDELVPAVWTAMLGACKMHKNFDLGVEVAENLINAEPENPGHYVLLSNM 422

Query: 631 YANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQL 690
           YA  GR D    VR +M  RG+KK+ G S I+VDN+ ++F + D +HPE   +Y +L++L
Sbjct: 423 YALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVDNRSYLFSMGDKSHPETNEIYCFLDEL 482

Query: 691 VLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRIC 750
           +   +  GY P  +  +H++E +++EYAL  HSEKLAVAFGLMK   G T+R++KNLRIC
Sbjct: 483 IWRCKDAGYAPVPESAMHELEGEEREYALRYHSEKLAVAFGLMKTGDGVTLRIVKNLRIC 542

Query: 751 GDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            DCH+A KF+S V+ REI+VRD  RFHHFR+G CSC DYW
Sbjct: 543 EDCHSAIKFISAVMNREIIVRDKLRFHHFREGSCSCSDYW 582



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 113/482 (23%), Positives = 199/482 (41%), Gaps = 107/482 (22%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           +  HAH++ +G      ++ +L+ + C +  + Y R LF  +  P               
Sbjct: 27  QQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDP--------------- 71

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
                             D+  +N++I A S       A+  +R M    + P  +TFTS
Sbjct: 72  ------------------DSFLFNSLIKASSKFGFSLDAVLFYRRMLLSRIVPSTYTFTS 113

Query: 155 VLSALALIVEEEKQCMQ--MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
           V+ A A   +    C+   +H  V  SG    + V  ALI+ Y K   +P V        
Sbjct: 114 VIKACA---DLSLLCIGTLVHSHVFVSGYASDSFVQAALIAFYAKSC-TPRV-------- 161

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           AR+VFDEMP+R  ++W +M++GY +N   + A E  + M E+                  
Sbjct: 162 ARKVFDEMPQRSIVAWNSMISGYEQNGLANEAVEVFNKMRES------------------ 203

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
               R++ D  T+ SV+SAC+  G    G  +H  ++ +        ++ +  +LV ++ 
Sbjct: 204 ----RVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGIT----MNVVLATSLVNMFS 255

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           +CG V  AR +F  M E ++V W A++S Y                              
Sbjct: 256 RCGDVGRARAVFYSMIEGNVVLWTAMISGY------------------------------ 285

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDS 451
              +GYG E +++F +M+  G  P    F   +++CA  G ++ GR + A +    G   
Sbjct: 286 -GMHGYGVEAMEVFHRMKARGVVPNSVTFVAVLSACAHAGLIDEGRSVFASMKQEYGVVP 344

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS--WNAMIAALGQHGNGARAIELYEQ 509
            +     ++ M+ R G++  A      + + + V   W AM+ A   H N    +E+ E 
Sbjct: 345 GVEHHVCMVDMFGRGGLLNEAYQFVKGLNSDELVPAVWTAMLGACKMHKNFDLGVEVAEN 404

Query: 510 ML 511
           ++
Sbjct: 405 LI 406



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 141/296 (47%), Gaps = 9/296 (3%)

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
           +L+   +AG I   + LF ++ + +   +  +I   ++ G+  + +  + +M L    P 
Sbjct: 48  LLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKASSKFGFSLDAVLFYRRMLLSRIVPS 107

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
            Y F   I +CA L  L  G  +H+ +  SGY S      ALI  YA+      A  VF+
Sbjct: 108 TYTFTSVIKACADLSLLCIGTLVHSHVFVSGYASDSFVQAALIAFYAKSCTPRVARKVFD 167

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKE 537
            MP    V+WN+MI+   Q+G    A+E++ +M +  + PD  TF++VLSAC+  G +  
Sbjct: 168 EMPQRSIVAWNSMISGYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDF 227

Query: 538 GRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
           G    + + G  GI          +++  R G    A+ V  S+  + +  +W A+++G 
Sbjct: 228 GCWLHDCIVGS-GITMNVVLATSLVNMFSRCGDVGRARAVFYSM-IEGNVVLWTAMISGY 285

Query: 598 RIHGNIDLGIQAAEQLFQLMPH----HAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
            +HG    G++A E   ++       ++ T+V + +  A+ G  D+   V   M+ 
Sbjct: 286 GMHG---YGVEAMEVFHRMKARGVVPNSVTFVAVLSACAHAGLIDEGRSVFASMKQ 338



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 90/203 (44%), Gaps = 5/203 (2%)

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           +Q HA LV +G   S +    L+T+    G +     +F ++ + DS  +N++I A  + 
Sbjct: 27  QQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKASSKF 86

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
           G    A+  Y +ML   I+P   TF +V+ AC    L+  G      +    G       
Sbjct: 87  GFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSLLCIGTLVHSHVFVS-GYASDSFV 145

Query: 558 YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ-- 615
            A  I    ++     A+ V D +P + S   W ++++G   +G  +  ++   ++ +  
Sbjct: 146 QAALIAFYAKSCTPRVARKVFDEMP-QRSIVAWNSMISGYEQNGLANEAVEVFNKMRESR 204

Query: 616 LMPHHAGTYVLLSNMYANLGRWD 638
           + P  A T+V + +  + LG  D
Sbjct: 205 VEPDSA-TFVSVLSACSQLGSLD 226


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/561 (38%), Positives = 341/561 (60%), Gaps = 17/561 (3%)

Query: 239 DYLDAAREFLDGMSENVGVAWNALISGYV---------HRELKMLMLRIQLDEFTYTSVI 289
           DY  A+R F    + NV + + ALI G+V             +ML   I  D +   S++
Sbjct: 98  DY--ASRIFQYTHNPNVYL-YTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASIL 154

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
            AC +    R G++VH+  L+          L +    + LY KCG++ +AR +F +MPE
Sbjct: 155 KACGSQLALREGREVHSRALKLGFSSNRLVRLRI----MELYGKCGELGDARRVFEEMPE 210

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
            D+V+   ++S+Y   GL++EA ++F  +R ++ + WT MI G  +N      L+ F  M
Sbjct: 211 -DVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGM 269

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
           + E  +P ++     +++C+ LGALE GR +H+ +     + +L  GNALI MY+RCG +
Sbjct: 270 QGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSI 329

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           + A  VF+ M + D +++N MI+ L  +G   +AIEL+  M+   + P  +TF+ VL+AC
Sbjct: 330 DEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNAC 389

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
           +H GLV  G   F +M   Y + P  +HY   +DLL R G+  EA D+I ++   P   +
Sbjct: 390 SHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIM 449

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
              LL+ C++H N++LG Q A++L       +GTYVLLS++YA+ G+W +AA+VR  M++
Sbjct: 450 LGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKE 509

Query: 650 RGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHD 709
            G++KEPGCS IEV+N++H FL+ D  HP+ + +Y+ LE+L   +R  GY P+ + VL D
Sbjct: 510 AGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQD 569

Query: 710 MESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIV 769
           +E  +KE+AL+ HSE+LA+ +GL+       +RV+KNLR+C DCH+A K ++K+  R+IV
Sbjct: 570 IEDGEKEWALAMHSERLAICYGLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIV 629

Query: 770 VRDGKRFHHFRDGKCSCGDYW 790
           VRD  RFH+F +G CSCGDYW
Sbjct: 630 VRDRNRFHYFENGACSCGDYW 650



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 193/422 (45%), Gaps = 71/422 (16%)

Query: 113 DTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA----LALIVEEEKQ 168
           +   Y A+I  +  + N   AI+L+  M  + + PDN+   S+L A    LAL     ++
Sbjct: 111 NVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLAL-----RE 165

Query: 169 CMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSW 228
             ++H   +K G      V   ++ +Y KC           +G ARRVF+EMPE D ++ 
Sbjct: 166 GREVHSRALKLGFSSNRLVRLRIMELYGKC---------GELGDARRVFEEMPE-DVVAS 215

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLR---------IQ 279
           T M++ Y     ++ A      +     V W A+I G+V  E     L          ++
Sbjct: 216 TVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVR 275

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            +EFT   V+SAC+  G   +G+ VH+Y+ + E     E +L V NAL+ +Y +CG ++E
Sbjct: 276 PNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEI----ELNLFVGNALINMYSRCGSIDE 331

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
           A+ +F++M +RD++++N +                               ISGL+ NG  
Sbjct: 332 AQTVFDEMKDRDVITYNTM-------------------------------ISGLSMNGKS 360

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL-HAQLVHSGYDSSLSAGNA 458
            + ++LF  M     +P +  F G + +C+  G ++ G ++ H+       +  +     
Sbjct: 361 RQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGC 420

Query: 459 LITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
           ++ +  R G +E A  +  TM    D +    +++A   H N    +EL EQ+ KE  L 
Sbjct: 421 MVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKN----LELGEQVAKE--LE 474

Query: 518 DR 519
           DR
Sbjct: 475 DR 476



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 160/330 (48%), Gaps = 41/330 (12%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R VH+  +  GF     +  R++++Y K  +L  AR +F+E+P+ D+VA T +I++YS 
Sbjct: 166 GREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPE-DVVASTVMISSYSD 224

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
              V+ A  +F++  ++ +DTV + AMI  +  N   + A+E FR M+ ++V+P+ FT  
Sbjct: 225 QGLVEEAGAVFSR--VRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIV 282

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
            VLSA + +   E     +H  + K    L   V NALI++Y +C S         +  A
Sbjct: 283 CVLSACSQLGALEIG-RWVHSYMRKFEIELNLFVGNALINMYSRCGS---------IDEA 332

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           + VFDEM +RD +++ TM++G   N     A E    M   VG                 
Sbjct: 333 QTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVM---VG----------------- 372

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQV-HAYLLRTEAKPTPEFSLPVNNALVTLYW 332
              R++    T+  V++AC++ GL   G ++ H+       +P  E        +V L  
Sbjct: 373 --RRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHY----GCMVDLLG 426

Query: 333 KCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
           + G++ EA D+   M    D +    +LSA
Sbjct: 427 RVGRLEEAYDLIRTMKMTPDHIMLGTLLSA 456


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/620 (35%), Positives = 332/620 (53%), Gaps = 67/620 (10%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           Q+H  + + G      +   L+++Y  C S         +  A  +FD + +R+   W  
Sbjct: 22  QLHARICQVGISFNPLLATKLVNLYCICNS---------LTNAHLLFDRISKRNLFLWNV 72

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           M+ GY                      AWN      +    +M    +  D+FT+  V+ 
Sbjct: 73  MIRGY----------------------AWNGPYELAISLYYQMRDYGLVPDKFTFPFVLK 110

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           AC+       GK++H  ++R+      E  + V  AL+ +Y KC                
Sbjct: 111 ACSALSAMEEGKKIHKDVIRS----GLESDVFVGAALIDMYAKC---------------- 150

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
                          G ++ A+ +F+ + ER+++ W  M++  +QNG  +E L L   M 
Sbjct: 151 ---------------GCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMA 195

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
             G KP +  F  +I + A  G L  G++LH      G++S+     AL+ MYA+ G V 
Sbjct: 196 FNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVN 255

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
            A  +F  +     VSWNAMI     HG+   A++L+++M K  +LPD ITF+ VL+AC+
Sbjct: 256 VARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEM-KGKVLPDHITFVGVLAACS 314

Query: 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590
           H GL+ EG+ +F +M   + I P   HY   IDLL   G+  EA  +I  +  +P A +W
Sbjct: 315 HGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVW 374

Query: 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650
            ALL  C+IHGN+++G  A E+L +L P   G YV+LSNMYA  G+WD  AR+R LM ++
Sbjct: 375 GALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWDGVARLRDLMMNK 434

Query: 651 GVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDM 710
           G+KK   CSWIEV NKVH FL +DT+HP+++A+Y  L++    M++ GY P    V HD+
Sbjct: 435 GLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLMKEAGYAPQVGSVFHDV 494

Query: 711 ESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVV 770
           E D+K   +S HSE+LA+AFGL+    G  + ++KNLRIC DCH A KF+SK+  REI +
Sbjct: 495 EDDEKVDMVSCHSERLAIAFGLISTSAGTKLLIIKNLRICEDCHVAIKFISKITEREITI 554

Query: 771 RDGKRFHHFRDGKCSCGDYW 790
           RD  R+HHF+DG CSCGD+W
Sbjct: 555 RDVNRYHHFKDGVCSCGDFW 574



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 128/488 (26%), Positives = 200/488 (40%), Gaps = 109/488 (22%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           YAS LQ C  R  I     + +HA +   G      +  +L+++YC    L  A  LFD 
Sbjct: 4   YASLLQSCVVRKAIEP--GKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDR 61

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           I +                                 R+   +N MI  Y+ N     AI 
Sbjct: 62  ISK---------------------------------RNLFLWNVMIRGYAWNGPYELAIS 88

Query: 136 LFRDMRRDDVKPDNFTFTSVLSAL-ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
           L+  MR   + PD FTF  VL A  AL   EE +  ++H  V++SG      V  ALI +
Sbjct: 89  LYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGK--KIHKDVIRSGLESDVFVGAALIDM 146

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           Y KC           + +AR+VFD++ ERD + W +M+  Y +N   D +      M   
Sbjct: 147 YAKC---------GCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVM--- 194

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
              A+N L                +  E T+   I+A A++GL   GK++H Y  R   +
Sbjct: 195 ---AFNGL----------------KPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFE 235

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
              +    V  AL+ +Y K G VN AR +F  + E+ +VSWNA+++ Y   G  +EA  L
Sbjct: 236 SNDK----VKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDL 291

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
           F+ M+ + L                                P    F G + +C+  G L
Sbjct: 292 FKEMKGKVL--------------------------------PDHITFVGVLAACSHGGLL 319

Query: 435 ENGRQLHAQLVHSGYD--SSLSAGNALITMYARCGVVEAA-NCVFNTMPNVDSVSWNAMI 491
             G+ +H + + S ++   ++     +I +   CG +E A   +       D+  W A++
Sbjct: 320 NEGK-MHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALL 378

Query: 492 AALGQHGN 499
            +   HGN
Sbjct: 379 HSCKIHGN 386



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 157/340 (46%), Gaps = 44/340 (12%)

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           Y S++ +C        GKQ+HA + +      P  +      LV LY  C  +  A  +F
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLA----TKLVNLYCICNSLTNAHLLF 59

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           +++ +R+L  WN ++  Y                               A NG  E  + 
Sbjct: 60  DRISKRNLFLWNVMIRGY-------------------------------AWNGPYELAIS 88

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           L+ QMR  G  P  + F   + +C+ L A+E G+++H  ++ SG +S +  G ALI MYA
Sbjct: 89  LYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYA 148

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           +CG VE+A  VF+ +   D V WN+M+A   Q+G    ++ L   M   G+ P   TF+ 
Sbjct: 149 KCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVI 208

Query: 525 VLSACNHAGLVKEGRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581
            ++A    GL+ +G+     +HG    +G    +      +D+  ++G  + A+ + + L
Sbjct: 209 SIAASADNGLLPQGKE----LHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELL 264

Query: 582 PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL-FQLMPHH 620
             K     W A++ G  +HG+ +  +   +++  +++P H
Sbjct: 265 EEKRVVS-WNAMITGYAMHGHANEALDLFKEMKGKVLPDH 303



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 125/283 (44%), Gaps = 18/283 (6%)

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
           +A  + SC    A+E G+QLHA++   G   +      L+ +Y  C  +  A+ +F+ + 
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
             +   WN MI     +G    AI LY QM   G++PD+ TF  VL AC+    ++EG++
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
             + +    G+       A  ID+  + G    A+ V D +  +     W ++LA    +
Sbjct: 124 IHKDVIRS-GLESDVFVGAALIDMYAKCGCVESARQVFDKID-ERDVVCWNSMLATYSQN 181

Query: 601 GNIDLGIQAAEQL-FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCS 659
           G  D  +     + F  +    GT+V+             AA     +  +G K+  G S
Sbjct: 182 GQPDESLALCRVMAFNGLKPTEGTFVI-----------SIAASADNGLLPQG-KELHGYS 229

Query: 660 W---IEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGY 699
           W    E ++KV   L+D  A   +  V + L +L+ E R + +
Sbjct: 230 WRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSW 272



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 134/307 (43%), Gaps = 45/307 (14%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + D+     LI  Y+    V+ AR++F+K  +  RD V +N+M+  YS N     ++ L 
Sbjct: 134 ESDVFVGAALIDMYAKCGCVESARQVFDK--IDERDVVCWNSMLATYSQNGQPDESLALC 191

Query: 138 RDMRRDDVKPDNFTFTSVLSALA---LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV 194
           R M  + +KP   TF   ++A A   L+     Q  ++H    + G      V  AL+ +
Sbjct: 192 RVMAFNGLKPTEGTFVISIAASADNGLL----PQGKELHGYSWRHGFESNDKVKTALMDM 247

Query: 195 YVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSEN 254
           Y K  S         +  AR +F+ + E+  +SW  M+TGY  + +   A E LD   E 
Sbjct: 248 YAKSGS---------VNVARSLFELLEEKRVVSWNAMITGYAMHGH---ANEALDLFKEM 295

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
            G                    ++  D  T+  V++AC++ GL   GK +H   + ++  
Sbjct: 296 KG--------------------KVLPDHITFVGVLAACSHGGLLNEGK-MHFRSMISDFN 334

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM-PERDLVSWNAILSAYVSAGLIDEAKS 373
             P  ++     ++ L   CG++ EA  +  +M  E D   W A+L +    G ++  + 
Sbjct: 335 IWP--TVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGEL 392

Query: 374 LFEAMRE 380
             E + E
Sbjct: 393 ALEKLVE 399


>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
          Length = 851

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 239/675 (35%), Positives = 376/675 (55%), Gaps = 24/675 (3%)

Query: 79  PDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFR 138
           P +V     IA  + + N++ AR  F   PL  R T  YNA++  Y  N    AA+ +F 
Sbjct: 15  PAVVDANARIARLARTGNMEGARATFEAMPL--RTTASYNALLAGYFRNHLPDAALRVFH 72

Query: 139 DMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGL-FTSVLNALISVYVK 197
            M   D+     ++ +++S L+L             T+    + + FTS+L      YV+
Sbjct: 73  RMPTRDLA----SYNALISGLSLRRHTLPDAAAALATIPYPPSVVSFTSLLRG----YVR 124

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
                      L+  A ++F +MPER+ +S+T ++ G++    +D AR+  D M     V
Sbjct: 125 ---------HGLLADAIQLFRQMPERNHISYTVLLGGFLDAGRVDEARKLFDEMPAKDVV 175

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
           AW A++SGY     ++   R   DE    +V+S  A    +    QV+  L R   +  P
Sbjct: 176 AWTAMLSGYCQVG-RVDEARTLFDEMPKRNVVSWTAMVSGYAQNGQVN--LARKLFEVMP 232

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
           E +     A++  Y + G++ +A ++FN MP+  L + N ++  +   G++D AKS+F+ 
Sbjct: 233 ERNEVSWTAMLFGYIQAGRIEDAEELFNAMPDHPLAACNGMIVGFGQQGMVDAAKSVFDR 292

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
           M ER+  +W+ +I    QN +  E L  F +M   G +P   +    +T CA L  L+ G
Sbjct: 293 MCERDDGTWSAIIKAYEQNEFLMEALSTFREMLHIGIRPNYPSVISILTVCAALAVLDYG 352

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           R++H  ++   +D  + A +ALITMY +CG ++ A  VF+     D V WN+MI    QH
Sbjct: 353 REVHGAMLRRSFDMDIYAVSALITMYIKCGNLDKAKRVFHMFEPKDVVMWNSMITGYAQH 412

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
           G G  A+ +++ M   G++PD IT++  L+AC++ G VKEGR  F +M    GI PG +H
Sbjct: 413 GLGEEALHIFDDMRLAGMVPDGITYIGALTACSYTGKVKEGRDIFNSMRTKSGIKPGLEH 472

Query: 558 YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           YA  +DLL RAG   EA  +I ++P +P A IW AL+  CR+H N ++   +A++L +L 
Sbjct: 473 YACMVDLLGRAGLVDEALYLIKTMPVEPDAVIWGALMGACRMHKNAEIAEISAKKLLELE 532

Query: 618 PHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT-A 676
           P +AG YVLLS++Y + GRW+DA+ +RK +  R + K  GCSWIE D +VH+F   D  A
Sbjct: 533 PGNAGPYVLLSHIYTSSGRWEDASNMRKFISSRHLNKSLGCSWIEYDKRVHLFKSGDVLA 592

Query: 677 HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLP 736
           H E  ++ K LE+L   + + GY  D  FVLHD++ +QK ++L  HSE+ AVA+GL+K+P
Sbjct: 593 HQEHASILKMLEKLDGLLMESGYSADGSFVLHDIDDEQKTHSLRYHSERQAVAYGLLKIP 652

Query: 737 GGATVRVLKNLRICG 751
               +RV+KNLR+CG
Sbjct: 653 EELPIRVMKNLRVCG 667



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 117/455 (25%), Positives = 206/455 (45%), Gaps = 82/455 (18%)

Query: 49  REHI-INRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKT 107
           R HI    L+  +  + ++  AR LFDE+P  D+VA T +++ Y     V  AR +F++ 
Sbjct: 141 RNHISYTVLLGGFLDAGRVDEARKLFDEMPAKDVVAWTAMLSGYCQVGRVDEARTLFDEM 200

Query: 108 PLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM-RRDDVKPDNFTFTSVLSALALIVEEE 166
           P   R+ V + AM++ Y+ N   + A +LF  M  R++V      F  + +      EE 
Sbjct: 201 P--KRNVVSWTAMVSGYAQNGQVNLARKLFEVMPERNEVSWTAMLFGYIQAGRIEDAEEL 258

Query: 167 KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDEL 226
              M  H            +  N +I  +           + ++ AA+ VFD M ERD+ 
Sbjct: 259 FNAMPDHP----------LAACNGMIVGF---------GQQGMVDAAKSVFDRMCERDDG 299

Query: 227 SWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYT 286
           +W+ ++  Y +N++L      ++ +S                RE  ML + I+ +  +  
Sbjct: 300 TWSAIIKAYEQNEFL------MEALS--------------TFRE--MLHIGIRPNYPSVI 337

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
           S+++ CA   +   G++VH  +LR     + +  +   +AL+T+Y KCG +++A+ +F+ 
Sbjct: 338 SILTVCAALAVLDYGREVHGAMLRR----SFDMDIYAVSALITMYIKCGNLDKAKRVFHM 393

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
              +D+V WN++++ Y   GL                               GEE L +F
Sbjct: 394 FEPKDVVMWNSMITGYAQHGL-------------------------------GEEALHIF 422

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL-VHSGYDSSLSAGNALITMYAR 465
             MRL G  P    + GA+T+C+  G ++ GR +   +   SG    L     ++ +  R
Sbjct: 423 DDMRLAGMVPDGITYIGALTACSYTGKVKEGRDIFNSMRTKSGIKPGLEHYACMVDLLGR 482

Query: 466 CGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
            G+V+ A  +  TMP   D+V W A++ A   H N
Sbjct: 483 AGLVDEALYLIKTMPVEPDAVIWGALMGACRMHKN 517



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 152/346 (43%), Gaps = 67/346 (19%)

Query: 48  PREHIIN--RLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFN 105
           P+ ++++   ++  Y ++ ++  AR LF+ +P+ + V+ T ++  Y  +  ++ A E+FN
Sbjct: 201 PKRNVVSWTAMVSGYAQNGQVNLARKLFEVMPERNEVSWTAMLFGYIQAGRIEDAEELFN 260

Query: 106 KTP-----------------------------LKMRDTVFYNAMITAYSHNSNGHAAIEL 136
             P                             +  RD   ++A+I AY  N     A+  
Sbjct: 261 AMPDHPLAACNGMIVGFGQQGMVDAAKSVFDRMCERDDGTWSAIIKAYEQNEFLMEALST 320

Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           FR+M    ++P+  +  S+L+  A +   +    ++H  +++    +    ++ALI++Y+
Sbjct: 321 FREMLHIGIRPNYPSVISILTVCAALAVLD-YGREVHGAMLRRSFDMDIYAVSALITMYI 379

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           KC +         +  A+RVF     +D + W +M+TGY ++   + A    D M     
Sbjct: 380 KCGN---------LDKAKRVFHMFEPKDVVMWNSMITGYAQHGLGEEALHIFDDMR---- 426

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
                 ++G V             D  TY   ++AC+ +G  + G+ +    +RT++   
Sbjct: 427 ------LAGMVP------------DGITYIGALTACSYTGKVKEGRDIFNS-MRTKSGIK 467

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
           P   L     +V L  + G V+EA  +   MP E D V W A++ A
Sbjct: 468 P--GLEHYACMVDLLGRAGLVDEALYLIKTMPVEPDAVIWGALMGA 511


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/557 (39%), Positives = 328/557 (58%), Gaps = 41/557 (7%)

Query: 246 EFLDGMSENVGVAWNALISGYVHRE---------LKMLMLRIQLDEFTYTSVISACANSG 296
           +F  G+S +    WN +I+ Y  R           ++  +  ++D F   SV+ AC    
Sbjct: 116 DFPSGLSPSA--QWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVS 173

Query: 297 LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW- 355
             +LGK++H ++L    K   +  + V NAL+ +Y +C  V  AR +F++M ERD+VSW 
Sbjct: 174 WTQLGKEIHGFVL----KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWI 229

Query: 356 ---NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
               A+L  Y   G +  A+ LF  + ++ ++SWT MI+G  ++   EEG KLF +M+ E
Sbjct: 230 PTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEE 289

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
                   F   IT       + N  ++    +            AL+ MYA+CG + AA
Sbjct: 290 NI------FPNEIT-------MLNKERVEVDCI---------LNTALVDMYAKCGDINAA 327

Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
             +F    + D   WNA+I     HG G  A++++ +M ++G+ P+ ITF+ +L AC+HA
Sbjct: 328 GRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHA 387

Query: 533 GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592
           GLV EG++ FE M   +G+ P  +HY   +DLL RAG   EA ++I S+P KP+  +W A
Sbjct: 388 GLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGA 447

Query: 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           L+A CR+H N  LG  AA QL ++ P + G  VL+SN+YA   RW DAA VRK M+  G+
Sbjct: 448 LVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGM 507

Query: 653 KKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMES 712
           KKEPG S IEV+  VH FL+ D +HP+ + + + L ++  ++ + GYVPDT  VL +++ 
Sbjct: 508 KKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDE 567

Query: 713 DQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRD 772
           ++KE AL+ HSEKLA+AFGL+       +R++KNLR+C DCH A K +SK+ GR I+VRD
Sbjct: 568 EEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRD 627

Query: 773 GKRFHHFRDGKCSCGDY 789
             RFHHFR+G CSCGDY
Sbjct: 628 RNRFHHFREGYCSCGDY 644



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/406 (26%), Positives = 187/406 (46%), Gaps = 72/406 (17%)

Query: 104 FNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIV 163
            N  P  +  +  +N +IT+Y+  +    A+ ++  +R+ D + DNF   SVL A    V
Sbjct: 114 LNDFPSGLSPSAQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQ-V 172

Query: 164 EEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER 223
              +   ++H  V+K G      V NAL+ +Y +C    +         AR VFD+M ER
Sbjct: 173 SWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEY---------ARLVFDKMMER 223

Query: 224 DELSW----TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH----RELKMLM 275
           D +SW    T ++  Y K  +L  AR+  +G+++   V+W A+I+G +      E   L 
Sbjct: 224 DVVSWIPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLF 283

Query: 276 LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG 335
           +R+Q +E  + + I+                       K   E    +N ALV +Y KCG
Sbjct: 284 IRMQ-EENIFPNEITML--------------------NKERVEVDCILNTALVDMYAKCG 322

Query: 336 KVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQ 395
            +N A  +F +   RD+  WNAI++                               G A 
Sbjct: 323 DINAAGRLFIEAISRDICMWNAIIT-------------------------------GFAM 351

Query: 396 NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLS 454
           +GYGEE L +F++M  +G KP D  F G + +C+  G +  G++L  ++VH+ G    + 
Sbjct: 352 HGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIE 411

Query: 455 AGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
               ++ +  R G+++ A+ +  +MP   +++ W A++AA   H N
Sbjct: 412 HYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKN 457



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 148/337 (43%), Gaps = 66/337 (19%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVA----RTT 86
           + L + +H  ++  G      + N L+ +Y +   + YAR +FD++ + D+V+     T 
Sbjct: 175 TQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTA 234

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           L+  Y+   ++ LAR++FN   L  +  V + AMI     ++      +LF  M+ +++ 
Sbjct: 235 LLDMYAKCGHLGLARQLFNG--LTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIF 292

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLN-ALISVYVKCVSSPFVS 205
           P+  T  +            K+ +++ C            +LN AL+ +Y KC       
Sbjct: 293 PNEITMLN------------KERVEVDC------------ILNTALVDMYAKCGD----- 323

Query: 206 SRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265
               + AA R+F E   RD   W  ++TG+  + Y + A +    M E  GV  N     
Sbjct: 324 ----INAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEM-ERQGVKPN----- 373

Query: 266 YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
                           + T+  ++ AC+++GL   GK++   ++ T     P+       
Sbjct: 374 ----------------DITFIGLLHACSHAGLVTEGKKLFEKMVHTFGL-VPQIEH--YG 414

Query: 326 ALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
            +V L  + G ++EA ++   MP + + + W A+++A
Sbjct: 415 CMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAA 451



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 26/194 (13%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D +  T L+  Y+   ++  A  +F +     RD   +NA+IT ++ +  G  A+++F +
Sbjct: 307 DCILNTALVDMYAKCGDINAAGRLFIEA--ISRDICMWNAIITGFAMHGYGEEALDIFAE 364

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISV----Y 195
           M R  VKP++ TF  +L A +            H  +V  G  LF  +++    V    +
Sbjct: 365 MERQGVKPNDITFIGLLHACS------------HAGLVTEGKKLFEKMVHTFGLVPQIEH 412

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPER-DELSWTTMMTG--YVKNDYLD--AAREFLDG 250
             C+    +    L+  A  +   MP + + + W  ++      KN  L   AA + L+ 
Sbjct: 413 YGCMVD-LLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEI 471

Query: 251 MSENVGVAWNALIS 264
             EN G  +N L+S
Sbjct: 472 EPENCG--YNVLMS 483


>gi|125553513|gb|EAY99222.1| hypothetical protein OsI_21180 [Oryza sativa Indica Group]
          Length = 818

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/635 (35%), Positives = 340/635 (53%), Gaps = 59/635 (9%)

Query: 210 MGAARRVFDEMPERDELSWTTMMT-----GYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
           + AA RV D M     + W  ++      G V +    AAR    G   NV   WN ++S
Sbjct: 189 VAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVAT-WNTVLS 247

Query: 265 GYVH----REL-----KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           G       RE       ML   ++ D  T +S++ + AN+GL R G ++H + LR + +P
Sbjct: 248 GCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEP 307

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
                +    ALV +Y KCG+++ A+ +F+ +  R+L +WN++++ Y +AG  D A  L 
Sbjct: 308 ----DVYTGTALVDMYAKCGRLDCAQKVFDALEHRNLTTWNSLVAGYANAGRFDIALELV 363

Query: 376 EAMRER---------------------------------------NLLSWTVMISGLAQN 396
           E M++                                        N++SWT +ISG   N
Sbjct: 364 ELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSWTSLISGSCHN 423

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
           G  E+      +M+ +G +P     +  + +CAGL   + G++LH   +   YD  +   
Sbjct: 424 GEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALRRAYDCDMVVS 483

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
            ALI MY++ G + +A  +F ++   + V  NAM+  L  HG G  AIEL+  M   G+ 
Sbjct: 484 TALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGREAIELFHDMWNSGLK 543

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
           PD ITF  +L+AC   GLV EG  YF+ M   YG+ P  ++YA  +DLL R G   EA D
Sbjct: 544 PDSITFTALLTACRSMGLVTEGWEYFDGMETKYGVKPTTENYACMVDLLARCGYLDEAMD 603

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636
            I+  P  P A  W ALL GC IHGN+ L   AA  LF+L P+++  Y+L+ N+Y     
Sbjct: 604 FIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFRLEPYNSANYLLMMNLYEYERM 663

Query: 637 WDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRK 696
           +D+A  ++  M+ RGV   PG SWI+++  +HVF VD   HPE   +Y+ L +LV +++K
Sbjct: 664 YDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEVDGKPHPETAEIYEELIRLVFQIKK 723

Query: 697 LGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGG-ATVRVLKNLRICGDCHN 755
            GYVPDT  + ++++ ++KE  L  H+EKLA+ +GL++     A VRV+KN R+C DCH 
Sbjct: 724 AGYVPDTSCIAYNVQEEEKEKLLLGHTEKLAITYGLIRSDASRAPVRVMKNTRMCNDCHE 783

Query: 756 AFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             K +S +  R+I++RD  RFHHF DGKCSC DYW
Sbjct: 784 VAKHISSLCDRQIILRDAVRFHHFVDGKCSCNDYW 818



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 130/280 (46%), Gaps = 9/280 (3%)

Query: 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAI 358
           R G+ VHAY L+      P     V   L  +Y +   V  A  + + M    +V WNA+
Sbjct: 155 RRGRAVHAYALKLALDAHP----LVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAV 210

Query: 359 LSAYVSAGLIDEAKSLFEAMR----ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF 414
           ++     GL+D+A  L   M     E N+ +W  ++SG +++G   E L + + M  +G 
Sbjct: 211 VACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGL 270

Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
           +P     +  + S A  G L +G ++H   + +  +  +  G AL+ MYA+CG ++ A  
Sbjct: 271 RPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQK 330

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
           VF+ + + +  +WN+++A     G    A+EL E M K  + PD  T+  +++  +  G 
Sbjct: 331 VFDALEHRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQ 390

Query: 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
             +       +    G+ P    +   I   C  G++ ++
Sbjct: 391 SSQAVLLLRQIKAA-GVTPNVVSWTSLISGSCHNGEYEDS 429



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 108/474 (22%), Positives = 179/474 (37%), Gaps = 128/474 (27%)

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLS----------ALALIV 163
            V +NA++   +       A+EL   M R   +P+  T+ +VLS          AL ++ 
Sbjct: 204 VVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVA 263

Query: 164 EEEKQCMQMHCTVVKS------GTGLFTSVL------------------NALISVYVKCV 199
              KQ ++   T V S       TGL    +                   AL+ +Y KC 
Sbjct: 264 SMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKC- 322

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV---- 255
                     +  A++VFD +  R+  +W +++ GY      D A E ++ M +N     
Sbjct: 323 --------GRLDCAQKVFDALEHRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPD 374

Query: 256 GVAWNALISGYV---HRELKMLMLR------IQLDEFTYTSVIS---------------- 290
              WN LI+GY         +L+LR      +  +  ++TS+IS                
Sbjct: 375 ITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCH 434

Query: 291 -------------------ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                              ACA   L + GK++H + LR       +  + V+ AL+ +Y
Sbjct: 435 EMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALRR----AYDCDMVVSTALIDMY 490

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            K G +  A+ IF  + +++LV  NA                               M++
Sbjct: 491 SKGGSLVSAKVIFESIQQKNLVLCNA-------------------------------MLT 519

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ-LHAQLVHSGYD 450
           GLA +G G E ++LF  M   G KP    F   +T+C  +G +  G +         G  
Sbjct: 520 GLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDGMETKYGVK 579

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARA 503
            +      ++ + ARCG ++ A       P +  +  W A++     HGN A A
Sbjct: 580 PTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALA 633



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 149/342 (43%), Gaps = 31/342 (9%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           +H   + +  +P  +    L+D+Y K  +L  A+ +FD +   ++    +L+A Y+ +  
Sbjct: 296 IHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVFDALEHRNLTTWNSLVAGYANAGR 355

Query: 97  VKLAREMFN--KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
             +A E+    K      D   +N +IT YS N     A+ L R ++   V P+  ++TS
Sbjct: 356 FDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSWTS 415

Query: 155 VLSALALIVEEEKQ---CMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           ++S      E E     C +M    V+      + +L A   + ++              
Sbjct: 416 LISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCF----- 470

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY-VHRE 270
           A RR +D     D +  T ++  Y K   L +A+   + + +   V  NA+++G  VH +
Sbjct: 471 ALRRAYD----CDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQ 526

Query: 271 LK--------MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL-LRTEAKPTPEFSL 321
            +        M    ++ D  T+T++++AC + GL   G +    +  +   KPT E   
Sbjct: 527 GREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDGMETKYGVKPTTE--- 583

Query: 322 PVNNA-LVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
             N A +V L  +CG ++EA D   + P +     W A+L+ 
Sbjct: 584 --NYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTG 623



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 134/324 (41%), Gaps = 39/324 (12%)

Query: 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSW 355
           RL  Q+H+  +RT     P     V  ALV L  + G+      + ++  E   +D V W
Sbjct: 69  RLAPQLHSLAVRTGLSRDPR----VTCALVDLLARLGRGPSCARLLHEAAEDGAKDAVLW 124

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           N  ++    A   DEA ++F  M+ R +        G A + Y  + L L +   + GF 
Sbjct: 125 NKHVAMLAEAEEWDEAIAVFREMQARGV----PRRRGRAVHAYALK-LALDAHPLVPGFL 179

Query: 416 PCDYA----FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV-- 469
              YA     A A      +GA                  S+   NA++   AR G+V  
Sbjct: 180 AGMYAENADVAAATRVLDAMGA-----------------GSVVPWNAVVACCARLGLVDD 222

Query: 470 --EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
             E A  +  + P  +  +WN +++   +HG    A+ +   MLK+G+ PD  T  ++L 
Sbjct: 223 ALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLK 282

Query: 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSA 587
           +  + GL++ G            + P        +D+  + G+   A+ V D+L  + + 
Sbjct: 283 SVANTGLLRHGME-IHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVFDALEHR-NL 340

Query: 588 PIWEALLAGCRIHGNIDLGIQAAE 611
             W +L+AG    G  D+ ++  E
Sbjct: 341 TTWNSLVAGYANAGRFDIALELVE 364


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/610 (37%), Positives = 341/610 (55%), Gaps = 48/610 (7%)

Query: 190 ALISVYVKCVSS-PFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           A++S  +  V+S P +S+   + A  RVF  +  RD      ++T Y K  Y + A +  
Sbjct: 40  AIVSALLIAVNSCPSISNCREIHA--RVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLF 97

Query: 249 DGMSENVGVAWNALISGY---VHRELKMLM-----LRIQLDEFTYTSVISACANSGLFRL 300
           D M     V+WN+LISG+   +H  L         + ++ +E T  S+ISAC  SG    
Sbjct: 98  DDMPHKDLVSWNSLISGFSRCLHMSLTAFYTMKFEMSVKPNEVTILSMISAC--SGALDA 155

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           GK +H + ++          + V N+L+ +Y K G               DL S      
Sbjct: 156 GKYIHGFGIKVGGT----LEVKVANSLINMYGKSG---------------DLTS------ 190

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
                     A  LFEA+ + N +SW  +I+    NG   EG+  F++MR  G +  +  
Sbjct: 191 ----------ACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGT 240

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
               + +C  LG  +    +H  +  +G+ + ++   AL+  YA+ G + A+  VF  + 
Sbjct: 241 ILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVG 300

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
             D V+W AM+A    HG G  AI+L+E M  +G+ PD +TF  +LSAC+H+GLV EG+ 
Sbjct: 301 FADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKS 360

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
           YF  M   YGI P  DHY+  +DLL R G  ++A +VI ++P +P+A +W ALL  CR+H
Sbjct: 361 YFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVH 420

Query: 601 GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSW 660
           GNI+LG + AE L  + P     Y++LSNMY+    W DAA+VR L+++RG+K+ PG S 
Sbjct: 421 GNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSS 480

Query: 661 IEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALS 720
           IE  NK H F V D +HPE + +Y  LE+L+ ++RK GY   T++VL D+E + KE  ++
Sbjct: 481 IEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVKEDMIN 540

Query: 721 THSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFR 780
            HSEKLA+AFGL+    G  + + KNLRICGDCH+  K +S +  R I++RD KRFHHF 
Sbjct: 541 KHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFHHFS 600

Query: 781 DGKCSCGDYW 790
           DG CSC DYW
Sbjct: 601 DGFCSCADYW 610



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 154/327 (47%), Gaps = 30/327 (9%)

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDI----FNQMPERDLVSWNAILSAYVSAGLIDEA 371
           TPE    + +AL+     C  ++  R+I    F  +  RD    + +++ Y   G  ++A
Sbjct: 37  TPE---AIVSALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDA 93

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSCAG 430
             LF+ M  ++L+SW  +ISG ++  +    L  F  M+ E   KP +      I++C+G
Sbjct: 94  LKLFDDMPHKDLVSWNSLISGFSRCLH--MSLTAFYTMKFEMSVKPNEVTILSMISACSG 151

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
             AL+ G+ +H   +  G    +   N+LI MY + G + +A  +F  +P+ ++VSWN++
Sbjct: 152 --ALDAGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSI 209

Query: 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY- 549
           IAA   +G     I+ + +M + GI  D  T L +L AC H G+ K      E++HG   
Sbjct: 210 IAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLA----ESIHGLMF 265

Query: 550 --GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
             G           +D   + G+ S +  V   + F      W A+LAG   HG   LG 
Sbjct: 266 CTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVA-WTAMLAGYAAHG---LGR 321

Query: 608 QAAEQLFQLM------PHHAGTYVLLS 628
           +A  +LF+ M      P H     LLS
Sbjct: 322 EAI-KLFESMANKGLEPDHVTFTHLLS 347



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 114/483 (23%), Positives = 212/483 (43%), Gaps = 89/483 (18%)

Query: 40  HMISSGFKPREHIINRLIDI-YCKSL---KLVYARTLFDEIPQPDIVARTTLIAAYSASD 95
           H++     P   +   LI +  C S+   + ++AR +F  +   D      L+  Y+   
Sbjct: 30  HLVRQCATPEAIVSALLIAVNSCPSISNCREIHAR-VFKSLLYRDGFIGDQLVTCYNKLG 88

Query: 96  NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPDNFTFTS 154
             + A ++F+  P K  D V +N++I+ +S     H ++  F  M+ +  VKP+  T  S
Sbjct: 89  YAEDALKLFDDMPHK--DLVSWNSLISGFSRCL--HMSLTAFYTMKFEMSVKPNEVTILS 144

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           ++SA +  ++  K    +H   +K G  L   V N+LI++Y K            + +A 
Sbjct: 145 MISACSGALDAGKY---IHGFGIKVGGTLEVKVANSLINMYGKSGD---------LTSAC 192

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
           R+F+ +P+ + +SW +++   V N     ARE +D  +                   KM 
Sbjct: 193 RLFEAIPDPNTVSWNSIIAAQVTNG---CAREGIDYFN-------------------KMR 230

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
            L I+ DE T  +++ AC + G+ +L + +H  +  T         + +  AL+  Y K 
Sbjct: 231 RLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGA----KITIATALLDTYAKL 286

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL----LSWTVMI 390
           G+++ +  +F ++   D V+W A+L+ Y + GL  EA  LFE+M  + L    +++T ++
Sbjct: 287 GRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLL 346

Query: 391 SGLAQNGYGEEGLKLFSQM-RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           S  + +G   EG   F+ M  + G +P                     R  H        
Sbjct: 347 SACSHSGLVNEGKSYFNVMSEVYGIEP---------------------RVDHY------- 378

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYE 508
                  + ++ +  RCG++  A  V   MP   ++  W A++ A   HGN     E+ E
Sbjct: 379 -------SCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAE 431

Query: 509 QML 511
            ++
Sbjct: 432 HLI 434



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/346 (20%), Positives = 122/346 (35%), Gaps = 89/346 (25%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +H   I  G      + N LI++Y KS  L  A  LF+ IP P+             
Sbjct: 156 GKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPN------------- 202

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                               TV +N++I A   N      I+ F  MRR  ++ D  T  
Sbjct: 203 --------------------TVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTIL 242

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           ++L A  L +   K    +H  +  +G G   ++  AL+  Y K            + A+
Sbjct: 243 ALLQA-CLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKL---------GRLSAS 292

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS----ENVGVAWNALISGYVHR 269
             VF E+   D ++WT M+ GY  +     A +  + M+    E   V +  L+S   H 
Sbjct: 293 YGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHS 352

Query: 270 EL------------KMLMLRIQLDEFT------------------------------YTS 287
            L            ++  +  ++D ++                              + +
Sbjct: 353 GLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGA 412

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
           ++ AC   G   LGK+V  +L+  E      + +  N    +  WK
Sbjct: 413 LLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWK 458



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 33/126 (26%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           LA S+H  M  +GF  +  I   L+D Y K  +L  +  +F E+   D VA T ++A Y+
Sbjct: 256 LAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYA 315

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
           A     L RE                              AI+LF  M    ++PD+ TF
Sbjct: 316 AHG---LGRE------------------------------AIKLFESMANKGLEPDHVTF 342

Query: 153 TSVLSA 158
           T +LSA
Sbjct: 343 THLLSA 348


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/543 (39%), Positives = 320/543 (58%), Gaps = 37/543 (6%)

Query: 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
           D F++  ++ A AN    R+G Q+H   L      T  F   V   L+++Y +CG V  A
Sbjct: 105 DSFSFAFIVKAAANLRSVRVGIQLHCQAL-VHGLDTHLF---VGTTLISMYGECGFVGFA 160

Query: 341 RDIFNQMPE-------------------------------RDLVSWNAILSAYVSAGLID 369
           R +F++MPE                               R+L+SWN +L+ Y  AG ++
Sbjct: 161 RKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELE 220

Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
            A+ +F  M  ++ +SW+ MI G A NGY EE    F +++ +G +P + +  G +++CA
Sbjct: 221 LAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACA 280

Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV-DSVSWN 488
             GALE G+ LH  +  SG    +S  NAL+  Y++CG V  A  VF  + N  + VSW 
Sbjct: 281 QAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWT 340

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP 548
           +M+AAL  HG+G  AI ++ +M + GI PD I F+++L AC+HAGLV++G  YF+ M G 
Sbjct: 341 SMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGM 400

Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
           Y I P  +HY   +DL  RAG+  +A + +  +P   +A IW  LL  C +HG++ L  Q
Sbjct: 401 YNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQ 460

Query: 609 AAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVH 668
             E+L +L P+++  +VLLSN YA  G+W DAA VR+ M ++ + K PG S IEVD  ++
Sbjct: 461 VKERLSELDPNNSSDHVLLSNAYAVAGKWKDAASVRRSMTEQRITKTPGWSMIEVDKIMY 520

Query: 669 VFLVDDTAHPEAQAVYKYLEQLVLEMR-KLGYVPDTKFVLHDMESDQKEYALSTHSEKLA 727
            FL     +   +  YK L++++  +R + GYVP+   VLHD+E ++KE ++S HSEKLA
Sbjct: 521 TFLAGTKQYKITEEAYKKLKEIIRRLRVEGGYVPEIGRVLHDIEEEEKEGSVSVHSEKLA 580

Query: 728 VAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCG 787
           VAFG+ +L  G T+R++KNLRIC DCH   K +S++   EIVVRD  RFH F+DG CSC 
Sbjct: 581 VAFGIARLCKGRTIRIVKNLRICRDCHAVMKLISQIYKVEIVVRDRSRFHSFKDGYCSCR 640

Query: 788 DYW 790
           DYW
Sbjct: 641 DYW 643



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 131/500 (26%), Positives = 216/500 (43%), Gaps = 99/500 (19%)

Query: 61  CKSL---KLVYARTL-FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVF 116
           CKSL   K ++A  L       P I  +     A S SD++  A  +F  TP    D   
Sbjct: 15  CKSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTPNP--DVFM 72

Query: 117 YNAMITAYSHNSNGHAAIELFRDMRRDDVKP-DNFTFTSVLSALALIVEEEKQCMQMHCT 175
           +N +I     +     ++  F +MRR+   P D+F+F  ++ A A +    +  +Q+HC 
Sbjct: 73  HNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANL-RSVRVGIQLHCQ 131

Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE------------- 222
            +  G      V   LIS+Y +C           +G AR+VFDEMPE             
Sbjct: 132 ALVHGLDTHLFVGTTLISMYGEC---------GFVGFARKVFDEMPEPNAIAWNAMVTAC 182

Query: 223 ------------------RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                             R+ +SW  M+ GY K   L+ ARE    M     V+W+ +I 
Sbjct: 183 CRGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIV 242

Query: 265 GYVH-----------RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
           G+ H           REL+   +R   +E + T V+SACA +G    GK +H ++     
Sbjct: 243 GFAHNGYFEEAFSFFRELQRKGMRP--NETSLTGVLSACAQAGALEFGKILHGFI----E 296

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ-MPERDLVSWNAILSAYVSAGLIDEAK 372
           K    + + VNNAL+  Y KCG V  A+ +F + M ER++VSW ++++A           
Sbjct: 297 KSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAA----------- 345

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
                               LA +G+GEE + +F +M   G +P + AF   + +C+  G
Sbjct: 346 --------------------LAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAG 385

Query: 433 ALENGRQLHAQLV-HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAM 490
            +E G +   ++      + S+     ++ +Y R G ++ A      MP    ++ W  +
Sbjct: 386 LVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTL 445

Query: 491 IAALGQHGNGARAIELYEQM 510
           + A   HG+   A ++ E++
Sbjct: 446 LGACSMHGDVKLAEQVKERL 465



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 155/329 (47%), Gaps = 39/329 (11%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
           N ++   C+   +   R LFD +P  ++++   ++A Y+ +  ++LAREMF + P  M+D
Sbjct: 176 NAMVTACCRGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMP--MKD 233

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMH 173
            V ++ MI  ++HN     A   FR+++R  ++P+  + T VLSA A     E   + +H
Sbjct: 234 DVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKI-LH 292

Query: 174 CTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDE-MPERDELSWTTMM 232
             + KSG     SV NAL+  Y KC          LM  A+ VF+  M ER+ +SWT+MM
Sbjct: 293 GFIEKSGLAWIVSVNNALLDTYSKC-------GNVLM--AQLVFERIMNERNIVSWTSMM 343

Query: 233 TGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISAC 292
                + + + A      M E          SG            I+ DE  + S++ AC
Sbjct: 344 AALAMHGHGEEAIGIFHKMEE----------SG------------IRPDEIAFISLLYAC 381

Query: 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERD 351
           +++GL   G +   Y  + +     E S+     +V LY + G++ +A +   QMP    
Sbjct: 382 SHAGLVEQGCE---YFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCT 438

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
            + W  +L A    G +  A+ + E + E
Sbjct: 439 AIIWRTLLGACSMHGDVKLAEQVKERLSE 467


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/636 (35%), Positives = 357/636 (56%), Gaps = 46/636 (7%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           Q+H   +K+G      + + L +  V  +     SSR +   AR VF +MPE +   W T
Sbjct: 37  QLHAIFIKTG-----QIQDPLTAAEV--IKFCAFSSRDI-DYARAVFRQMPEPNCFCWNT 88

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++    + +      E L   SE + +    L  G           R++ + FT+ SV+ 
Sbjct: 89  ILRVLAETN-----DEHLQ--SEALMLFSAMLCDG-----------RVKPNRFTFPSVLK 130

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF------ 344
           ACA +   R GKQ+H  +++       EF   V + LV +Y  C  + +A  +F      
Sbjct: 131 ACARASRLREGKQIHGLIVKFGFHED-EF---VISNLVRMYVMCAVMEDAYSLFCKNVVD 186

Query: 345 ----------NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
                      +  + ++V WN ++   V  G I  AK+LF+ M +R+++SW VMISG A
Sbjct: 187 FDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYA 246

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
           QNG+  E + LF +M+     P        + + A +GALE G+ +H     +  +    
Sbjct: 247 QNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDV 306

Query: 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
            G+AL+ MY++CG ++ A  VF T+P  ++++W+A+I A   HG    AI  +  M K G
Sbjct: 307 LGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAG 366

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
           + P+ + ++ +LSAC+HAGLV+EGR +F  M    G+ P  +HY   +DLL RAG   EA
Sbjct: 367 VTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEA 426

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL 634
           +++I ++P +P   IW+ALL  C++H N+ +G + AE L +L PH +G+YV LSN+YA+L
Sbjct: 427 EELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASL 486

Query: 635 GRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEM 694
           G W+  ARVR  M+   ++K+PGCSWIE+   +H FLV+D +H +A+ +   L ++ +++
Sbjct: 487 GNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKL 546

Query: 695 RKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCH 754
           R  GY P+T  V  + +  ++  AL  HSEK+AVAFGL+       ++++KNLRIC DCH
Sbjct: 547 RSNGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCH 606

Query: 755 NAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            + K +S +  R+I+VRD KRFH F  G CSC DYW
Sbjct: 607 ASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 125/471 (26%), Positives = 204/471 (43%), Gaps = 70/471 (14%)

Query: 62  KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMI 121
           K L  ++ +T   +I  P   A      A+S+ D +  AR +F + P    +   +N ++
Sbjct: 36  KQLHAIFIKT--GQIQDPLTAAEVIKFCAFSSRD-IDYARAVFRQMPEP--NCFCWNTIL 90

Query: 122 TAYSHNSNGH---AAIELFRDMRRDD-VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVV 177
              +  ++ H    A+ LF  M  D  VKP+ FTF SVL A A      ++  Q+H  +V
Sbjct: 91  RVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACAR-ASRLREGKQIHGLIV 149

Query: 178 KSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFD-----EMPERDE----LSW 228
           K G      V++ L+ +YV C  +    + SL       FD     E+ +R +    + W
Sbjct: 150 KFGFHEDEFVISNLVRMYVMC--AVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLW 207

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY---------VHRELKMLMLRIQ 279
             M+ G V+   + +A+   D M +   V+WN +ISGY         ++   +M    I 
Sbjct: 208 NIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNID 267

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            +  T  SV+ A A  G   LGK +H Y      K   E    + +ALV +Y KCG ++E
Sbjct: 268 PNYVTLVSVLPAIARIGALELGKWIHLY----AGKNKIEIDDVLGSALVDMYSKCGSIDE 323

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
           A  +F  +P+R+ ++W+AI+ A+                               A +G  
Sbjct: 324 ALQVFETLPKRNAITWSAIIGAF-------------------------------AMHGRA 352

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH-SGYDSSLSAGNA 458
           E+ +  F  M   G  P D A+ G +++C+  G +E GR   + +V   G    +     
Sbjct: 353 EDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGC 412

Query: 459 LITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN---GARAIE 505
           ++ +  R G +E A  +   MP   D V W A++ A   H N   G R  E
Sbjct: 413 MVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAE 463



 Score = 92.4 bits (228), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 157/346 (45%), Gaps = 56/346 (16%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF---------------DEIPQ 78
            + +H  ++  GF   E +I+ L+ +Y     +  A +LF               D+  Q
Sbjct: 141 GKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQ 200

Query: 79  P-DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
             ++V    +I       ++K A+ +F++ P   R  V +N MI+ Y+ N +   AI LF
Sbjct: 201 DGNVVLWNIMIDGQVRLGDIKSAKNLFDEMP--QRSVVSWNVMISGYAQNGHFIEAINLF 258

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           ++M+  ++ P+  T  SVL A+A I   E     +H    K+   +   + +AL+ +Y K
Sbjct: 259 QEMQSSNIDPNYVTLVSVLPAIARIGALELG-KWIHLYAGKNKIEIDDVLGSALVDMYSK 317

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C S         +  A +VF+ +P+R+ ++W+ ++  +  +                 G 
Sbjct: 318 CGS---------IDEALQVFETLPKRNAITWSAIIGAFAMH-----------------GR 351

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPT 316
           A +A+I  ++     M    +  ++  Y  ++SAC+++GL   G+   +++++    +P 
Sbjct: 352 AEDAIIHFHL-----MGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPR 406

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
            E        +V L  + G + EA ++   MP E D V W A+L A
Sbjct: 407 IEHY----GCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGA 448


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 260/716 (36%), Positives = 389/716 (54%), Gaps = 77/716 (10%)

Query: 81   IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDM 140
            I     L+  Y+    +  A  +F    L  RD V +N +I+    N     A+  +  M
Sbjct: 410  IALSNGLVNMYAKCGAIDKASRVFRL--LCARDRVSWNTIISVLDQNGFCEGAMMNYCMM 467

Query: 141  RRDDVKPDNFTFTSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
            R+  + P NF   S LS+ A L +    Q  Q+HC  VK G  L TSV NAL+ +Y  C 
Sbjct: 468  RQGCISPSNFAAISGLSSCASLRLLTAGQ--QVHCDAVKWGLDLDTSVSNALVKMYGDC- 524

Query: 200  SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                  +RS    +  +F+ M E D +SW ++M   V +    A         E+V V  
Sbjct: 525  -----GARS---ESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTA---------ESVEVFS 567

Query: 260  NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
            N + SG            +  ++ T+ +++SA +   +  LGKQVHA +L+  A      
Sbjct: 568  NMMRSG------------LTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIE---- 611

Query: 320  SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
                              + A D             NA++S Y  +G +D  + LF +M 
Sbjct: 612  ------------------DNAVD-------------NALMSCYAKSGDMDSCEQLFSSMS 640

Query: 380  -ERNLLSWTVMISGLAQNGYGEEGLK-LFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
              R+ +SW  MISG   NG+ +E +  ++  M       C   F+  + +CA + ALE G
Sbjct: 641  GRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQMLDC-CTFSIVLNACASVAALERG 699

Query: 438  RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
             ++HA  + S  +S +   +AL+ MY++CG ++ A+ VFN+M   +  SWN+MI+   +H
Sbjct: 700  MEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYARH 759

Query: 498  GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
            G G +A+E++E+M + G  PD +TF++VLSAC+HAGLV  G  YFE M   +GI P  +H
Sbjct: 760  GLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDYFEMMED-HGILPHIEH 818

Query: 558  YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGN---IDLGIQAAEQLF 614
            Y+  IDLL RAGK  + ++ I+ +P KP+  IW  +L  CR   +   IDLG +A+  L 
Sbjct: 819  YSCVIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDRIDLGKEASRMLL 878

Query: 615  QLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDD 674
            +L P +   YVL SN YA  GRW+D A+ R  M    +KKE G SW+ + + VH F+  D
Sbjct: 879  ELEPQNPVNYVLASNFYAATGRWEDTAKARAAMGGAAMKKEAGQSWVTLGDGVHTFIAGD 938

Query: 675  TAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMK 734
             +HP  + +Y+ L  L+ +++  GYVP T+F L+D+E + KE  LS HSEKLAVAF L +
Sbjct: 939  RSHPNTKEIYEKLNFLIQKIKNAGYVPMTEFALYDLEEENKEELLSYHSEKLAVAFVLTR 998

Query: 735  LPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
                  +R++KNLR+CGDCH AF+++S++V R+I++RD  RFHHF DGKCSCGDYW
Sbjct: 999  SSSDVPIRIMKNLRVCGDCHTAFRYISQIVCRQIILRDSIRFHHFEDGKCSCGDYW 1054



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 143/614 (23%), Positives = 266/614 (43%), Gaps = 111/614 (18%)

Query: 1   MMMKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIY 60
           M+ + +++ R     + S L+ C    P   + A  VH  +  + +     + N LI +Y
Sbjct: 148 MLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYASNTTVCNALISMY 207

Query: 61  --CKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYN 118
             C     + A+ +FD  P                                 +RD + +N
Sbjct: 208 GNCSVGLPLQAQQVFDTTP---------------------------------VRDLITWN 234

Query: 119 AMITAYSHNSNGHAAIELFRDMRRDD----VKPDNFTFTSVLSALALIVEEEKQCMQMHC 174
           A+++ Y+      +   LF  M  DD    ++P+  TF S+++A +L         Q+  
Sbjct: 235 ALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNEHTFGSLITATSLSSCSSGVLDQVFA 294

Query: 175 TVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTG 234
            V+KSG+     V +AL+S + +           ++  A+ +F  + ER+ ++   ++ G
Sbjct: 295 RVLKSGSSSDLYVGSALVSAFAR---------HGMLDEAKDIFINLKERNAVTLNGLIVG 345

Query: 235 YVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACAN 294
            VK    +          E VG+      S  V+ +  +++L   + EF+          
Sbjct: 346 LVKQHCSE----------EAVGIFMGTRDSFVVNTDTFVVLLS-AVAEFSI-------PE 387

Query: 295 SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS 354
            GL R G++VH ++LRT      +  + ++N LV +Y KCG +++A  +F  +  RD VS
Sbjct: 388 DGLMR-GREVHGHILRT---GLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVS 443

Query: 355 WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF 414
           WN I+S                                L QNG+ E  +  +  MR    
Sbjct: 444 WNTIISV-------------------------------LDQNGFCEGAMMNYCMMRQGCI 472

Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
            P ++A    ++SCA L  L  G+Q+H   V  G D   S  NAL+ MY  CG    +  
Sbjct: 473 SPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWE 532

Query: 475 VFNTMPNVDSVSWNAMIAAL-GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533
           +FN+M   D VSWN+++  +   H   A ++E++  M++ G+ P+++TF+ +LSA +   
Sbjct: 533 IFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLS 592

Query: 534 LVKEGRRYFETM--HGPYGIPPGEDHYARFIDLLC--RAGKFSEAKDVIDSLPFKPSAPI 589
           +++ G++    +  HG       ED+      + C  ++G     + +  S+  +  A  
Sbjct: 593 VLELGKQVHAVVLKHGAI-----EDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVS 647

Query: 590 WEALLAGCRIHGNI 603
           W ++++G   +G++
Sbjct: 648 WNSMISGYIYNGHL 661



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 137/520 (26%), Positives = 230/520 (44%), Gaps = 116/520 (22%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           +H  ++  G      + N L+++Y K  +L  AR +FD + + + V+ T L++ Y  S  
Sbjct: 78  LHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSG- 136

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
             +  E F            + AM+   S  S                 +P  FTF SVL
Sbjct: 137 --ITDEAFR----------VFKAMLWEGSEFS-----------------RPTPFTFGSVL 167

Query: 157 SA--------LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
            A        LA  V       Q+H  V K+     T+V NALIS+Y  C       S  
Sbjct: 168 RACQDAGPDLLAFAV-------QVHGLVSKTIYASNTTVCNALISMYGNC-------SVG 213

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
           L   A++VFD  P RD ++W  +M+ Y K  Y+               V+   L    +H
Sbjct: 214 LPLQAQQVFDTTPVRDLITWNALMSVYAKKGYV---------------VSTFTLFMAMLH 258

Query: 269 RELKMLMLRIQLDEFTYTSVISACA----NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
            +     + ++ +E T+ S+I+A +    +SG+     QV A +L++ +       L V 
Sbjct: 259 DDSA---IELRPNEHTFGSLITATSLSSCSSGVL---DQVFARVLKSGSSS----DLYVG 308

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER--- 381
           +ALV+ + + G ++EA+DIF  + ER+ V+ N ++   V     +EA  +F   R+    
Sbjct: 309 SALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFVV 368

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
           N  ++ V++S +A+    E+GL     MR                          GR++H
Sbjct: 369 NTDTFVVLLSAVAEFSIPEDGL-----MR--------------------------GREVH 397

Query: 442 AQLVHSGY-DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
             ++ +G  D  ++  N L+ MYA+CG ++ A+ VF  +   D VSWN +I+ L Q+G  
Sbjct: 398 GHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLDQNGFC 457

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
             A+  Y  M +  I P     ++ LS+C    L+  G++
Sbjct: 458 EGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQ 497



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 178/389 (45%), Gaps = 67/389 (17%)

Query: 165 EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERD 224
           EE    ++H  +VK G      + N L+++Y K          S + AAR+VFD M ER+
Sbjct: 71  EEAAPERLHLELVKRGLTHDLFLSNHLVNLYAK---------GSRLAAARQVFDGMLERN 121

Query: 225 ELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFT 284
            +SWT +++GYV +   D A      M       W          E        +   FT
Sbjct: 122 AVSWTCLVSGYVLSGITDEAFRVFKAM------LWEG-------SEFS------RPTPFT 162

Query: 285 YTSVISACANSG--LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC--GKVNEA 340
           + SV+ AC ++G  L     QVH  +    +K     +  V NAL+++Y  C  G   +A
Sbjct: 163 FGSVLRACQDAGPDLLAFAVQVHGLV----SKTIYASNTTVCNALISMYGNCSVGLPLQA 218

Query: 341 RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGE 400
           + +F+  P RDL++WNA++S Y   G +    +LF AM                   + +
Sbjct: 219 QQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAML------------------HDD 260

Query: 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG--RQLHAQLVHSGYDSSLSAGNA 458
             ++L         +P ++ F   IT+ + L +  +G   Q+ A+++ SG  S L  G+A
Sbjct: 261 SAIEL---------RPNEHTFGSLITATS-LSSCSSGVLDQVFARVLKSGSSSDLYVGSA 310

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           L++ +AR G+++ A  +F  +   ++V+ N +I  L +      A+ ++    ++  + +
Sbjct: 311 LVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIF-MGTRDSFVVN 369

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMHG 547
             TF+ +LSA     + ++G      +HG
Sbjct: 370 TDTFVVLLSAVAEFSIPEDGLMRGREVHG 398



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 115/249 (46%), Gaps = 25/249 (10%)

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           DL   N +++ Y     +  A+ +F+ M ERN +SWT ++SG   +G  +E  ++F  M 
Sbjct: 90  DLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSGITDEAFRVFKAML 149

Query: 411 LEG---FKPCDYAFAGAITSC--AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465
            EG    +P  + F   + +C  AG   L    Q+H  +  + Y S+ +  NALI+MY  
Sbjct: 150 WEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYASNTTVCNALISMYGN 209

Query: 466 C--GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG----ILPDR 519
           C  G+   A  VF+T P  D ++WNA+++   + G       L+  ML +     + P+ 
Sbjct: 210 CSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNE 269

Query: 520 ITF-----LTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY--ARFIDLLCRAGKFS 572
            TF      T LS+C+   L +   R  ++           D Y  +  +    R G   
Sbjct: 270 HTFGSLITATSLSSCSSGVLDQVFARVLKS-------GSSSDLYVGSALVSAFARHGMLD 322

Query: 573 EAKDVIDSL 581
           EAKD+  +L
Sbjct: 323 EAKDIFINL 331



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 2/81 (2%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + D+V  + L+  YS    +  A ++FN   +  ++   +N+MI+ Y+ +  G  A+E+F
Sbjct: 712 ESDVVVESALLDMYSKCGRIDYASKVFNS--MSQKNEFSWNSMISGYARHGLGEKALEIF 769

Query: 138 RDMRRDDVKPDNFTFTSVLSA 158
            +M+R+   PD+ TF SVLSA
Sbjct: 770 EEMQRNGACPDHVTFVSVLSA 790


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/658 (35%), Positives = 355/658 (53%), Gaps = 83/658 (12%)

Query: 140 MRRDDVKPDNFTFTSVL---SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
           M R    P+ FTF   +   +AL+L +  +    Q+HC V K+G  L   V  +LIS+Y 
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGK----QLHCHVFKTGCLLEPFVQTSLISMYG 56

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELS--WTTMMTGYVKNDYLDAAREFLDGMSEN 254
           KC         SL+  AR++FDE P+  +L+  + ++++GY                   
Sbjct: 57  KC---------SLIDNARKLFDENPQSRKLTVCYNSLLSGY------------------- 88

Query: 255 VGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
              A N+ +   V    +M  L ++++  T   ++  C   G   LG  VH + ++    
Sbjct: 89  ---ALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVK---- 141

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
               F L +++++                            N +L+ YV +G ID  + L
Sbjct: 142 ----FGLDMDSSV---------------------------GNCLLTMYVKSGEIDCGRKL 170

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
           F+ M  + L++W  MI+G AQNG     L+L+ +M  +GF P      G ++SCA LGAL
Sbjct: 171 FDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGAL 230

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
             G+++  ++   G+ S+    NAL+ MYARCG ++ A  +F+ MP    VSW A+I   
Sbjct: 231 SVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGY 290

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554
           G HG G  A+ L+++M++ GI PD   F++VLSAC+HAGL  +G  YF  M   YG+ PG
Sbjct: 291 GMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPG 350

Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
            +HY+  +DLL RAG+ +EA+++I+S+  +    +W ALL  C+IH N++L   A EQ+ 
Sbjct: 351 AEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVI 410

Query: 615 QLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDD 674
           +L P + G YVLLSN+Y   G  +   RVR LMR R +KK+PGCS++E   +VH+F   D
Sbjct: 411 ELEPTNTGYYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVHLFFAGD 470

Query: 675 TAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEY--ALSTHSEKLAVAFGL 732
             HP+   +YK L +L         V D      +    ++EY  ++  HSEKLAVAF L
Sbjct: 471 RNHPQTNEIYKKLNELE------NLVKDLDGCKKNDHERREEYLNSMGVHSEKLAVAFAL 524

Query: 733 MKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +       + ++KNLRICGDCH   K +SK+V R+ VVRD  RFHHF++G CSC +YW
Sbjct: 525 LNTRKETEIIIIKNLRICGDCHLFIKLVSKIVDRQFVVRDATRFHHFKNGFCSCKEYW 582



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 114/446 (25%), Positives = 190/446 (42%), Gaps = 71/446 (15%)

Query: 84  RTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD 143
           +T+LI+ Y     +  AR++F++ P   + TV YN++++ Y+ NS     + LF +MR  
Sbjct: 48  QTSLISMYGKCSLIDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMREL 107

Query: 144 DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
            V+ +  T   ++     I       M +H   VK G  + +SV N L+++YVK      
Sbjct: 108 GVEINGVTMLGLVQPCG-IPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVK------ 160

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
                 +   R++FDEMP +  ++W  M+ GY +N           G++ NV       +
Sbjct: 161 ---SGEIDCGRKLFDEMPRKGLITWNAMINGYAQN-----------GLANNV-------L 199

Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
             Y   E K        D  T   V+S+CA+ G   +GK+V   +        P     +
Sbjct: 200 ELYKEMESKGFC----PDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNP----FL 251

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
           NNALV +Y +CG + +ARDIF+ MP + +VSW AI+  Y                     
Sbjct: 252 NNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGY--------------------- 290

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
                       +G GE  + LF +M   G KP   AF   +++C+  G    G      
Sbjct: 291 ----------GMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGV 340

Query: 444 LVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGA 501
           +    G        + ++ +  R G +  A  +  +M    D   W A++ A   H N  
Sbjct: 341 MERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVE 400

Query: 502 RAIELYEQMLKEGILPDRITFLTVLS 527
            A   +EQ+++  + P    +  +LS
Sbjct: 401 LAELAFEQVIE--LEPTNTGYYVLLS 424



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 94/278 (33%), Gaps = 83/278 (29%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           S+ + V   M   GF     + N L+++Y +   L  AR +FD +P   +V+ T      
Sbjct: 231 SVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWT------ 284

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                                      A+I  Y  +  G  A+ LF +M R  +KPD   
Sbjct: 285 ---------------------------AIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTA 317

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           F SVLSA +            H  +   G   F                          G
Sbjct: 318 FVSVLSACS------------HAGLTNKGLDYF--------------------------G 339

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV-GVAWNALISG-YVHR 269
              R +   P  +  S    + G  +   L+ ARE ++ M     G  W AL+    +HR
Sbjct: 340 VMERKYGLRPGAEHYSCMVDLLG--RAGRLNEARELIESMQVRADGALWGALLGACKIHR 397

Query: 270 ELKMLMLRIQLDEFTYTSVIS-ACANSGLFRLGKQVHA 306
                   ++L E  +  VI     N+G + L   V+ 
Sbjct: 398 N-------VELAELAFEQVIELEPTNTGYYVLLSNVYT 428


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/613 (36%), Positives = 339/613 (55%), Gaps = 45/613 (7%)

Query: 185 TSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAA 244
           T+  N L++ Y +  + P      L+  AR +FD +P  D +S+ T+++ +     +  A
Sbjct: 43  TADYNRLLAGYAR-AARPGGRRDRLLADARHLFDRIPRPDAVSYNTLLSCHFAAGDVRGA 101

Query: 245 REFLDGM---SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
           R+    M   + NV  +WN ++SG                               L R G
Sbjct: 102 RDLFAAMPATARNV-TSWNTMLSG-------------------------------LSRSG 129

Query: 302 K--QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD-LVSWNAI 358
              +  A  L   A+ +  +     NA+V+ +   G +  A + F   P+++  V W A+
Sbjct: 130 AVGEARAVFLAMPARNSISW-----NAMVSCFAHAGDMCAAEECFEDAPDKENAVLWTAM 184

Query: 359 LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RLEGFKPC 417
           +S Y+ +G +++A   FEAM  R+L+SW  +++G  +N   E+ L +F  M R    +P 
Sbjct: 185 VSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPN 244

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
           +   +  +  C+ L AL  GRQ+H           ++AG +L++MY +CG ++ A  +F+
Sbjct: 245 ESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFS 304

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKE 537
            M   D ++WNAMI+    HG+G  AIEL+E+M  +G+ P+ ITF+ VL+AC H G+   
Sbjct: 305 EMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDF 364

Query: 538 GRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
           G + FE M   YGI    DHY+  +DLLCRAG    A  +I S+PF+P    +  LL   
Sbjct: 365 GMQCFERMQEVYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHPSAYGTLLNAS 424

Query: 598 RIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPG 657
           R++ N++    AA +L +  P +AG YV L+N+YA   +W D +RVR+ M+D  V K PG
Sbjct: 425 RVYKNMEFAEFAAGKLIEQNPQNAGAYVQLANIYAVANQWADVSRVRRWMKDNAVVKTPG 484

Query: 658 CSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEY 717
            SW+E++  +HVF  +D  HP+   +++ L QL   M+ +GYVPD  F LHD++   K  
Sbjct: 485 YSWVEINGVIHVFRSNDRLHPQLSLIHERLCQLEERMKAMGYVPDLDFALHDVDESLKVQ 544

Query: 718 ALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFH 777
            L  HSEKLA+AFGL+    G T+R+ KNLR+CGDCH A K +SK+  REI++RD  RFH
Sbjct: 545 MLMRHSEKLAIAFGLLSTAPGITLRIFKNLRVCGDCHTAAKLISKIEDREIILRDTTRFH 604

Query: 778 HFRDGKCSCGDYW 790
           HFR G CSCGDYW
Sbjct: 605 HFRSGHCSCGDYW 617



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 176/380 (46%), Gaps = 76/380 (20%)

Query: 54  NRLIDIYCKSLK--------LVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFN 105
           NRL+  Y ++ +        L  AR LFD IP+PD V+  TL++ + A+ +V+ AR++F 
Sbjct: 47  NRLLAGYARAARPGGRRDRLLADARHLFDRIPRPDAVSYNTLLSCHFAAGDVRGARDLFA 106

Query: 106 KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEE 165
             P   R+   +N M++  S +     A  +F  M      P   + +            
Sbjct: 107 AMPATARNVTSWNTMLSGLSRSGAVGEARAVFLAM------PARNSIS------------ 148

Query: 166 EKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDE 225
                                  NA++S +              M AA   F++ P+++ 
Sbjct: 149 ----------------------WNAMVSCFAHAGD---------MCAAEECFEDAPDKEN 177

Query: 226 -LSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE-------LKMLMLR 277
            + WT M++GY+ + +++ A +F + M     V+WNA+++GYV          +   M+R
Sbjct: 178 AVLWTAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVR 237

Query: 278 ---IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
              ++ +E T +SV+  C+N      G+QVH +      K      +    +LV++Y KC
Sbjct: 238 DADVRPNESTLSSVLLGCSNLSALGFGRQVHQWC----TKLPLSRRVTAGTSLVSMYCKC 293

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR----ERNLLSWTVMI 390
           G ++ A  +F++M  RD+++WNA++S Y   G   EA  LFE M+    E N +++  ++
Sbjct: 294 GDLDGACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVL 353

Query: 391 SGLAQNGYGEEGLKLFSQMR 410
           +     G  + G++ F +M+
Sbjct: 354 TACIHTGMCDFGMQCFERMQ 373


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/615 (35%), Positives = 338/615 (54%), Gaps = 52/615 (8%)

Query: 189 NALISVYVKCVSS-----PFV--------SSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
           N +  +Y K + +     PFV        S+ + +G A ++F      +   +T ++ G 
Sbjct: 46  NQIPPIYAKIIRNHHHQDPFVVFELLRVCSNLNSIGYASKIFSHTQNPNVYLYTALIDGL 105

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
           V + Y      + DG                +H   +M+   +  D +  TSV+ AC   
Sbjct: 106 VLSCY------YTDG----------------IHLYYQMINSSLVPDSYAVTSVLKACGCH 143

Query: 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSW 355
              + G++VH+ +L+          +     L+ LY KCG   +AR +F++MPERD+V+ 
Sbjct: 144 LALKEGREVHSQVLKLGLSSNRSIRI----KLIELYGKCGAFEDARRVFDEMPERDVVAS 199

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
             +++ Y   G+ D              + WT MI GL +NG     L++F  M+ E   
Sbjct: 200 TVMINYYFDHGIKDT-------------VCWTAMIDGLVRNGESNRALEVFRNMQREDVM 246

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P +      +++C+ LGAL+ GR + + +     + +   G ALI MY+RCG ++ A  V
Sbjct: 247 PNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRV 306

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           F  M   + +++N+MI     HG    A+EL+  ++K+G  P  +TF+ VL+AC+H GL 
Sbjct: 307 FEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLA 366

Query: 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
           + G   F +M   YGI P  +HY   +DLL R G+  EA   I  +   P   +  ALL+
Sbjct: 367 ELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLS 426

Query: 596 GCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKE 655
            C+IHGN++L  + A+ L       +GTY+LLSN Y++ G+W +AA VR  MR+ G++KE
Sbjct: 427 ACKIHGNLELAERVAKSLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKE 486

Query: 656 PGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQK 715
           PGCS IEV+N++H FL+ D  HP+ + +YK LE+L   +R  GY P T+ VLHD+E  +K
Sbjct: 487 PGCSSIEVNNEIHEFLLGDLRHPQKEKIYKKLEELNQILRLEGYTPATEVVLHDIEKSEK 546

Query: 716 EYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKR 775
           E+AL+ HSE+LA+ +GL+      T+RV+KNLR+C DCH   K +S +  R+IVVRD  R
Sbjct: 547 EWALAIHSERLAICYGLISTKPLTTLRVVKNLRVCNDCHLTIKLISNITRRKIVVRDRNR 606

Query: 776 FHHFRDGKCSCGDYW 790
           FHHF +G CSCGDYW
Sbjct: 607 FHHFENGVCSCGDYW 621



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 139/523 (26%), Positives = 229/523 (43%), Gaps = 98/523 (18%)

Query: 43  SSGFKP------REHIINRLIDIYCK---SLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
           +SG KP      R H I+ L +  CK    +  +YA+ + +   Q   V    L+   S 
Sbjct: 20  NSGTKPKNTPNRRRHFISLLQN--CKHNNQIPPIYAKIIRNHHHQDPFVV-FELLRVCSN 76

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
            +++  A ++F+ T  +  +   Y A+I     +      I L+  M    + PD++  T
Sbjct: 77  LNSIGYASKIFSHT--QNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVT 134

Query: 154 SVLSA----LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
           SVL A    LAL     K+  ++H  V+K G     S+   LI +Y KC           
Sbjct: 135 SVLKACGCHLAL-----KEGREVHSQVLKLGLSSNRSIRIKLIELYGKC---------GA 180

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV-- 267
              ARRVFDEMPERD ++ T M+  Y  +   D              V W A+I G V  
Sbjct: 181 FEDARRVFDEMPERDVVASTVMINYYFDHGIKDT-------------VCWTAMIDGLVRN 227

Query: 268 ---HRELKML--MLR--IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
              +R L++   M R  +  +E T   V+SAC+  G  +LG+ V +Y+     K   E +
Sbjct: 228 GESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYM----DKHRIELN 283

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
             V  AL+ +Y +CG ++EA+ +F QM E++++++N+                       
Sbjct: 284 HFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNS----------------------- 320

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
                   MI G A +G   E ++LF  +  +GF P    F G + +C+  G  E G ++
Sbjct: 321 --------MIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEI 372

Query: 441 -HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV-DSVSWNAMIAALGQHG 498
            H+     G +  +     ++ +  R G +E A      M    D V   A+++A   HG
Sbjct: 373 FHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHG 432

Query: 499 NGARAIELYEQMLKEGIL---PDRITFLTVLSACNHAGLVKEG 538
           N    +EL E++ K  +     D  T++ + +A + +G  KE 
Sbjct: 433 N----LELAERVAKSLVACKNADSGTYILLSNAYSSSGKWKEA 471



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 176/392 (44%), Gaps = 66/392 (16%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R VH+ ++  G      I  +LI++Y K      AR +FDE+P+ D+VA T +I  Y  
Sbjct: 149 GREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYY-- 206

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                     F+     ++DTV + AMI     N   + A+E+FR+M+R+DV P+  T  
Sbjct: 207 ----------FDHG---IKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIV 253

Query: 154 SVLSALALIVEEEKQCMQM----HCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
            VLSA +     E   +Q+       + K    L   V  ALI++Y +C           
Sbjct: 254 CVLSACS-----ELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGD--------- 299

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +  A+RVF++M E++ +++ +M+ G+  +     A E   G+          +  G+   
Sbjct: 300 IDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGL----------IKQGFTPS 349

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV-HAYLLRTEAKPTPEFSLPVNNALV 328
            +            T+  V++AC++ GL  LG ++ H+       +P  E        +V
Sbjct: 350 SV------------TFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHY----GCMV 393

Query: 329 TLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLID----EAKSLFEAMRERNL 383
            L  + G++ EA      M    D V   A+LSA    G ++     AKSL  A +  + 
Sbjct: 394 DLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLV-ACKNADS 452

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
            ++ ++ +  + +G  +E  ++ + MR EG +
Sbjct: 453 GTYILLSNAYSSSGKWKEAAEVRTNMREEGIE 484


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/471 (43%), Positives = 296/471 (62%), Gaps = 8/471 (1%)

Query: 323 VNNALVTLYWKC--GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           V N +++ Y KC  G +N A  +F++MP +D V+ + +++AY      + A  +FE M E
Sbjct: 15  VANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAY-----FESAYKVFELMPE 69

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
           +++++W  +I+G A NG   E L L+ +M  EG +P  +     +++CA L  L  GR+ 
Sbjct: 70  KDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLGRRA 129

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
           H  +V  G + +L A NAL+ +YA+CG +  A  +F+ M    + VSW ++I  L  +G 
Sbjct: 130 HVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGF 189

Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA 559
           G  A+E ++ M +EG++P  ITF+ VL AC+H G+V EG  YF+ M   Y I P  +HY 
Sbjct: 190 GKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEHYG 249

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
             +DLL RAG   EA D I  +P +P+A IW  LL  C IHG++ LG  A  +L QL P 
Sbjct: 250 CMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFARARLLQLEPK 309

Query: 620 HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPE 679
            +G YVLLSN+YA+  RW D   VR+ M   GV+K PG S +E+ N VH F++ D  HP+
Sbjct: 310 DSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHVHEFVMGDRTHPQ 369

Query: 680 AQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGA 739
           ++A+YK L ++ ++++  GYVP T  VL D+E ++KE AL  HSEK+A+AF L+    G 
Sbjct: 370 SEAIYKMLVEMAMKLKLAGYVPHTANVLADIEEEEKESALFYHSEKIAIAFMLINTLPGT 429

Query: 740 TVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            +R++KNLR+C DCH A K +SKV  R+IVVRD  RFHHFRDG CSC DYW
Sbjct: 430 PIRIIKNLRVCADCHFAIKLISKVFERDIVVRDCSRFHHFRDGSCSCRDYW 480



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 144/331 (43%), Gaps = 52/331 (15%)

Query: 38  HAHMISSGFKPREHIINRLIDIYCKSL--KLVYARTLFDEIPQPDIVARTTLIAAYSASD 95
           H   +  G     ++ N ++  Y K +   L  A  LFDE+P  D V   T+I AY  S 
Sbjct: 1   HCQAVKPGIFSHGYVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAYFES- 59

Query: 96  NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV 155
               A ++F   P K  D V +N++I  ++ N   + A+ L++ M  + V+PD FT  S+
Sbjct: 60  ----AYKVFELMPEK--DIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSL 113

Query: 156 LSA---LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
           LSA   LA +V   +     H  +VK G        NAL+ +Y KC           +  
Sbjct: 114 LSACAELATLVLGRRA----HVYMVKVGLNKNLHANNALLDLYAKC---------GTISE 160

Query: 213 ARRVFDEMP-ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
           AR++FDEM  ER+ +SWT+++ G   N +   A E    M             G V  E+
Sbjct: 161 ARKIFDEMGIERNVVSWTSLIVGLAVNGFGKEALEHFKDMER----------EGLVPSEI 210

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                       T+  V+ AC++ G+   G +   Y  R + +      +     +V L 
Sbjct: 211 ------------TFVGVLYACSHCGIVNEGFE---YFKRMKEQYDIVPRIEHYGCMVDLL 255

Query: 332 WKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
            + G + EA D    MP + + V W  +L A
Sbjct: 256 GRAGLLKEAYDYIQDMPLQPNAVIWRTLLGA 286



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 32/201 (15%)

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGV----------------------------VEAA 472
           H Q V  G  S     N +++ Y++C V                             E+A
Sbjct: 1   HCQAVKPGIFSHGYVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAYFESA 60

Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
             VF  MP  D V+WN++I     +G    A+ LY++M  EG+ PD  T +++LSAC   
Sbjct: 61  YKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAEL 120

Query: 533 GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592
             +  GRR    M    G+          +DL  + G  SEA+ + D +  + +   W +
Sbjct: 121 ATLVLGRRAHVYM-VKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTS 179

Query: 593 LLAGCRIHGNIDLGIQAAEQL 613
           L+ G  ++G    G +A E  
Sbjct: 180 LIVGLAVNG---FGKEALEHF 197



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 57/155 (36%), Gaps = 44/155 (28%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           T  L R  H +M+  G     H  N L+D+Y K   +  AR +FDE+             
Sbjct: 122 TLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIE---------- 171

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
                                 R+ V + ++I   + N  G  A+E F+DM R+ + P  
Sbjct: 172 ----------------------RNVVSWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSE 209

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLF 184
            TF  VL A +            HC +V  G   F
Sbjct: 210 ITFVGVLYACS------------HCGIVNEGFEYF 232


>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/540 (40%), Positives = 321/540 (59%), Gaps = 41/540 (7%)

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
           S N G + +A+   + +R  +ML  RI    +T+TSVI ACA+  L RLG  VH+++   
Sbjct: 83  SSNFGFSLDAV---FFYR--RMLHSRIVPSTYTFTSVIKACADLSLLRLGTIVHSHVF-V 136

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
               +  F   V  ALVT Y K      AR +F++MP+                      
Sbjct: 137 SGYASNSF---VQAALVTFYAKSCTPRVARKVFDEMPQ---------------------- 171

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
                    R++++W  MISG  QNG   E +++F++MR  G +P    F   +++C+ L
Sbjct: 172 ---------RSIIAWNSMISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQL 222

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
           G+L+ G  LH  +V +G   ++    +L+ M++RCG V  A  VF++M   + VSW AMI
Sbjct: 223 GSLDLGCWLHECIVGTGIRMNVVLATSLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAMI 282

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
           +  G HG G  A+E++ +M   G++P+R+T++ VLSAC HAGL+ EGR  F +M   YG+
Sbjct: 283 SGYGMHGYGVEAMEVFHRMKACGVVPNRVTYVAVLSACAHAGLINEGRLVFASMKQEYGV 342

Query: 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP-IWEALLAGCRIHGNIDLGIQAA 610
            PG +H+   +D+  R G  +EA   +  L  +   P +W A+L  C++H N DLG++ A
Sbjct: 343 VPGVEHHVCMVDMFGRGGLLNEAYQFVRGLSSEELVPAVWTAMLGACKMHKNFDLGVEVA 402

Query: 611 EQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVF 670
           E L    P + G YVLLSNMYA  GR D    VR +M  RG+KK+ G S I+V+N+ ++F
Sbjct: 403 ENLISAEPENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVENRSYLF 462

Query: 671 LVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAF 730
            + D +HPE   +Y YL++L+   +  GY P  +  +H++E +++EYAL  HSEKLAVAF
Sbjct: 463 SMGDKSHPETNEIYCYLDELMWRCKDAGYAPAPESAMHELEEEEREYALRYHSEKLAVAF 522

Query: 731 GLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           GLMK   G T+R++KNLRIC DCH+A KF+S V+ REI+VRD  RFHHFR+G CSC DYW
Sbjct: 523 GLMKTCHGVTLRIVKNLRICEDCHSAIKFISVVMNREIIVRDKLRFHHFREGSCSCSDYW 582



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 113/480 (23%), Positives = 200/480 (41%), Gaps = 103/480 (21%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           +  HAH++ +G      ++ +L+ + C +  + Y R LF  +  PD              
Sbjct: 27  QQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPD-------------- 72

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
                              +  +N++I A S+      A+  +R M    + P  +TFTS
Sbjct: 73  -------------------SFLFNSLIKASSNFGFSLDAVFFYRRMLHSRIVPSTYTFTS 113

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           V+ A A +    +    +H  V  SG    + V  AL++ Y K   +P V        AR
Sbjct: 114 VIKACADL-SLLRLGTIVHSHVFVSGYASNSFVQAALVTFYAKSC-TPRV--------AR 163

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
           +VFDEMP+R  ++W +M++GY +N     A E  + M E+ G                  
Sbjct: 164 KVFDEMPQRSIIAWNSMISGYEQNGLASEAVEVFNKMRESGG------------------ 205

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
               + D  T+ SV+SAC+  G   LG  +H  ++ T  +     ++ +  +LV ++ +C
Sbjct: 206 ----EPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIR----MNVVLATSLVNMFSRC 257

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
           G V  AR +F+ M E ++VSW A++S Y                                
Sbjct: 258 GDVGRARAVFDSMNEGNVVSWTAMISGY-------------------------------G 286

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSL 453
            +GYG E +++F +M+  G  P    +   +++CA  G +  GR + A +    G    +
Sbjct: 287 MHGYGVEAMEVFHRMKACGVVPNRVTYVAVLSACAHAGLINEGRLVFASMKQEYGVVPGV 346

Query: 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVS--WNAMIAALGQHGNGARAIELYEQML 511
                ++ M+ R G++  A      + + + V   W AM+ A   H N    +E+ E ++
Sbjct: 347 EHHVCMVDMFGRGGLLNEAYQFVRGLSSEELVPAVWTAMLGACKMHKNFDLGVEVAENLI 406



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 127/259 (49%), Gaps = 5/259 (1%)

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
           +L+   +AG I   + LF ++ + +   +  +I   +  G+  + +  + +M      P 
Sbjct: 48  LLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKASSNFGFSLDAVFFYRRMLHSRIVPS 107

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
            Y F   I +CA L  L  G  +H+ +  SGY S+     AL+T YA+      A  VF+
Sbjct: 108 TYTFTSVIKACADLSLLRLGTIVHSHVFVSGYASNSFVQAALVTFYAKSCTPRVARKVFD 167

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKE 537
            MP    ++WN+MI+   Q+G  + A+E++ +M + G  PD  TF++VLSAC+  G +  
Sbjct: 168 EMPQRSIIAWNSMISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDL 227

Query: 538 GRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
           G    E + G  GI          +++  R G    A+ V DS+  + +   W A+++G 
Sbjct: 228 GCWLHECIVGT-GIRMNVVLATSLVNMFSRCGDVGRARAVFDSMN-EGNVVSWTAMISGY 285

Query: 598 RIHGNIDLGIQAAEQLFQL 616
            +HG    G++A E   ++
Sbjct: 286 GMHG---YGVEAMEVFHRM 301



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 145/333 (43%), Gaps = 74/333 (22%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L   VH+H+  SG+     +   L+  Y KS     AR +FDE+PQ  I+A  ++I+ Y 
Sbjct: 126 LGTIVHSHVFVSGYASNSFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYE 185

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
            +    LA E                              A+E+F  MR    +PD+ TF
Sbjct: 186 QNG---LASE------------------------------AVEVFNKMRESGGEPDSATF 212

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL--NALISVYVKCVSSPFVSSRSLM 210
            SVLSA + +   +  C    C V   GTG+  +V+   +L++++ +C           +
Sbjct: 213 VSVLSACSQLGSLDLGCWLHECIV---GTGIRMNVVLATSLVNMFSRCGD---------V 260

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
           G AR VFD M E + +SWT M++GY  + Y   A E    M +  GV  N +        
Sbjct: 261 GRARAVFDSMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRM-KACGVVPNRV-------- 311

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
                        TY +V+SACA++GL   G+ V A  ++ E    P     V   +V +
Sbjct: 312 -------------TYVAVLSACAHAGLINEGRLVFAS-MKQEYGVVPGVEHHV--CMVDM 355

Query: 331 YWKCGKVNEARDIFNQMPERDLVS--WNAILSA 361
           + + G +NEA      +   +LV   W A+L A
Sbjct: 356 FGRGGLLNEAYQFVRGLSSEELVPAVWTAMLGA 388



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 95/221 (42%), Gaps = 11/221 (4%)

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           +Q HA LV +G   S +    L+T+    G +     +F ++ + DS  +N++I A    
Sbjct: 27  QQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKASSNF 86

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557
           G    A+  Y +ML   I+P   TF +V+ AC    L++ G      +    G       
Sbjct: 87  GFSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADLSLLRLGTIVHSHVFVS-GYASNSFV 145

Query: 558 YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
            A  +    ++     A+ V D +P + S   W ++++G   +G   L  +A E +F  M
Sbjct: 146 QAALVTFYAKSCTPRVARKVFDEMP-QRSIIAWNSMISGYEQNG---LASEAVE-VFNKM 200

Query: 618 PHHAG-----TYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653
               G     T+V + +  + LG  D    + + +   G++
Sbjct: 201 RESGGEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIR 241


>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
 gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
          Length = 723

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/620 (35%), Positives = 348/620 (56%), Gaps = 29/620 (4%)

Query: 174 CTVVKSGTGL----FTSVLNALISVYVKCVSSPFV---SSRSLMGAARRVFDEMPERDEL 226
           C    +G GL      + L  ++    + V++P +   +S  L   ARR FDE+P +D +
Sbjct: 111 CCAAGAGAGLCRMLHAACLRTMLPSAARIVANPLIHMYASLGLTDDARRAFDEVPVKDAV 170

Query: 227 SWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY---------VHRELKMLMLR 277
            W T++ G V+   LD AR  L    E   V+W +LI+GY         V+    ML   
Sbjct: 171 VWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDG 230

Query: 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
           ++ DE      +SAC+       G+ +H  + +   + T +  +     L+ +Y KCG +
Sbjct: 231 VEPDEVAVIGALSACSKLKNLEFGRLLHLLVGKKRIQMTDKLVV----TLIDMYAKCGDI 286

Query: 338 NEARDIFN-----QMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
            +A+ +F+     Q PE     WN I+  Y   G +D A+SLF+ M  R+++++  MI+G
Sbjct: 287 AQAQAVFDAVGRGQKPE----PWNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITG 342

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
              +G   + L+LF Q+R  G +  ++     +T+CA LGAL  GR LHA +     +  
Sbjct: 343 YIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQGRALHASIEQRIVEED 402

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
           +    AL+ MY +CG V+ A  VF+ M   D  +W+AMIA L  +G G  A+E + QM +
Sbjct: 403 VYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQMKR 462

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
           +G  P  +T++ VL+AC+H+ L+ EGR++F  M   + + P  +HY   IDLL R+G   
Sbjct: 463 DGFQPTSVTYIAVLTACSHSSLLNEGRQHFNEMRSLHKLHPQIEHYGCMIDLLARSGLLD 522

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632
           EA  ++ ++P +P+A IW ++L+ CR+H NIDL   AAE L +L P     YV L N+Y 
Sbjct: 523 EAMHLVQTMPMQPNAVIWASILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYI 582

Query: 633 NLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVL 692
           +  +W +A R+R LM ++GVKK  G S I V  +VH F+V+D +HP    +   +E++  
Sbjct: 583 DSRQWVEAKRIRMLMEEQGVKKTAGYSSITVAGQVHKFVVNDQSHPWTLEIITMMEEIAR 642

Query: 693 EMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGD 752
            ++  GY P T  +  D++ ++KE AL  HSEK+A+AFGL+ LP    + ++KNLR+C D
Sbjct: 643 RLKSAGYSPATSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPNLPIHIMKNLRVCED 702

Query: 753 CHNAFKFMSKVVGREIVVRD 772
           CH+A K +S++  REI+VRD
Sbjct: 703 CHSAIKLISQLWNREIIVRD 722



 Score =  172 bits (436), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 146/509 (28%), Positives = 228/509 (44%), Gaps = 88/509 (17%)

Query: 31  SSLARSVHAHMISSGFKPREHII-NRLIDIYCKSLKLVY-ARTLFDEIPQPDIVARTTLI 88
           + L R +HA  + +       I+ N LI +Y  SL L   AR  FDE+P  D V   T+I
Sbjct: 118 AGLCRMLHAACLRTMLPSAARIVANPLIHMY-ASLGLTDDARRAFDEVPVKDAVVWATVI 176

Query: 89  AAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPD 148
                   +  AR +  + P   R+ V + ++I  YS       A+  F  M  D V+PD
Sbjct: 177 GGLVRWGLLDEARRLLVQAP--ERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPD 234

Query: 149 NFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
                  LSA + +   E   + +H  V K    +   ++  LI +Y KC          
Sbjct: 235 EVAVIGALSACSKLKNLEFGRL-LHLLVGKKRIQMTDKLVVTLIDMYAKCGD-------- 285

Query: 209 LMGAARRVFD-----EMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
            +  A+ VFD     + PE     W  ++ GY K  ++D AR   D M     + +N++I
Sbjct: 286 -IAQAQAVFDAVGRGQKPE----PWNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMI 340

Query: 264 SGYVH--RELKMLMLRIQL-------DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314
           +GY+H  R    L L +QL       D FT  S+++ACA+ G    G+ +HA +     +
Sbjct: 341 TGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQGRALHASI----EQ 396

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
              E  + +  ALV +Y KCG+V+EA  +F++M ERD+ +W+A                 
Sbjct: 397 RIVEEDVYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSA----------------- 439

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
                         MI+GLA NG G + L+ F QM+ +GF+P    +   +T+C+    L
Sbjct: 440 --------------MIAGLAFNGMGMDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLL 485

Query: 435 ENGRQ----------LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVD 483
             GRQ          LH Q+ H G          +I + AR G+++ A  +  TMP   +
Sbjct: 486 NEGRQHFNEMRSLHKLHPQIEHYG---------CMIDLLARSGLLDEAMHLVQTMPMQPN 536

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLK 512
           +V W ++++A   H N   A    E +LK
Sbjct: 537 AVIWASILSACRVHKNIDLARHAAEHLLK 565


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/610 (37%), Positives = 341/610 (55%), Gaps = 48/610 (7%)

Query: 190 ALISVYVKCVSS-PFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           A++S  +  V+S P +S+   + A  RVF  +  RD      ++T Y K  Y + A +  
Sbjct: 40  AIVSALLIAVNSCPSISNCREIHA--RVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLF 97

Query: 249 DGMSENVGVAWNALISGY---VHRELKMLM-----LRIQLDEFTYTSVISACANSGLFRL 300
           D M     V+WN+LISG+   +H  L         + ++ +E T  S+ISAC  +G    
Sbjct: 98  DDMPHKDLVSWNSLISGFSRCLHMSLTAFYTMKFEMSVKPNEVTILSMISAC--NGALDA 155

Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
           GK +H + ++          + V N+L+ +Y K G               DL S      
Sbjct: 156 GKYIHGFGIKVGGT----LEVKVANSLINMYGKSG---------------DLTS------ 190

Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
                     A  LFEA+ + N +SW  +I+    NG   EG+  F++MR  G +  +  
Sbjct: 191 ----------ACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGT 240

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
               + +C  LG  +    +H  +  +G+ + ++   AL+  YA+ G + A+  VF  + 
Sbjct: 241 ILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVG 300

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
             D V+W AM+A    HG G  AI+L+E M  +G+ PD +TF  +LSAC+H+GLV EG+ 
Sbjct: 301 FADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKS 360

Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
           YF  M   YGI P  DHY+  +DLL R G  ++A +VI ++P +P+A +W ALL  CR+H
Sbjct: 361 YFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVH 420

Query: 601 GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSW 660
           GNI+LG + AE L  + P     Y++LSNMY+    W DAA+VR L+++RG+K+ PG S 
Sbjct: 421 GNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSS 480

Query: 661 IEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALS 720
           IE  NK H F V D +HPE + +Y  LE+L+ ++RK GY   T++VL D+E + KE  ++
Sbjct: 481 IEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVKEDMIN 540

Query: 721 THSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFR 780
            HSEKLA+AFGL+    G  + + KNLRICGDCH+  K +S +  R I++RD KRFHHF 
Sbjct: 541 KHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFHHFS 600

Query: 781 DGKCSCGDYW 790
           DG CSC DYW
Sbjct: 601 DGFCSCADYW 610



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 153/327 (46%), Gaps = 30/327 (9%)

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDI----FNQMPERDLVSWNAILSAYVSAGLIDEA 371
           TPE    + +AL+     C  ++  R+I    F  +  RD    + +++ Y   G  ++A
Sbjct: 37  TPE---AIVSALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDA 93

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSCAG 430
             LF+ M  ++L+SW  +ISG ++  +    L  F  M+ E   KP +      I++C G
Sbjct: 94  LKLFDDMPHKDLVSWNSLISGFSRCLH--MSLTAFYTMKFEMSVKPNEVTILSMISACNG 151

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
             AL+ G+ +H   +  G    +   N+LI MY + G + +A  +F  +P+ ++VSWN++
Sbjct: 152 --ALDAGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSI 209

Query: 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY- 549
           IAA   +G     I+ + +M + GI  D  T L +L AC H G+ K      E++HG   
Sbjct: 210 IAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLA----ESIHGLMF 265

Query: 550 --GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
             G           +D   + G+ S +  V   + F      W A+LAG   HG   LG 
Sbjct: 266 CTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVA-WTAMLAGYAAHG---LGR 321

Query: 608 QAAEQLFQLM------PHHAGTYVLLS 628
           +A  +LF+ M      P H     LLS
Sbjct: 322 EAI-KLFESMANKGLEPDHVTFTHLLS 347



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 114/483 (23%), Positives = 211/483 (43%), Gaps = 89/483 (18%)

Query: 40  HMISSGFKPREHIINRLIDI-YCKSL---KLVYARTLFDEIPQPDIVARTTLIAAYSASD 95
           H++     P   +   LI +  C S+   + ++AR +F  +   D      L+  Y+   
Sbjct: 30  HLVRQCATPEAIVSALLIAVNSCPSISNCREIHAR-VFKSLLYRDGFIGDQLVTCYNKLG 88

Query: 96  NVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPDNFTFTS 154
             + A ++F+  P K  D V +N++I+ +S     H ++  F  M+ +  VKP+  T  S
Sbjct: 89  YAEDALKLFDDMPHK--DLVSWNSLISGFSRCL--HMSLTAFYTMKFEMSVKPNEVTILS 144

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           ++SA    ++  K    +H   +K G  L   V N+LI++Y K            + +A 
Sbjct: 145 MISACNGALDAGKY---IHGFGIKVGGTLEVKVANSLINMYGKSGD---------LTSAC 192

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
           R+F+ +P+ + +SW +++   V N     ARE +D  +                   KM 
Sbjct: 193 RLFEAIPDPNTVSWNSIIAAQVTNG---CAREGIDYFN-------------------KMR 230

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
            L I+ DE T  +++ AC + G+ +L + +H  +  T         + +  AL+  Y K 
Sbjct: 231 RLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGA----KITIATALLDTYAKL 286

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL----LSWTVMI 390
           G+++ +  +F ++   D V+W A+L+ Y + GL  EA  LFE+M  + L    +++T ++
Sbjct: 287 GRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLL 346

Query: 391 SGLAQNGYGEEGLKLFSQM-RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           S  + +G   EG   F+ M  + G +P                     R  H        
Sbjct: 347 SACSHSGLVNEGKSYFNVMSEVYGIEP---------------------RVDHY------- 378

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYE 508
                  + ++ +  RCG++  A  V   MP   ++  W A++ A   HGN     E+ E
Sbjct: 379 -------SCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAE 431

Query: 509 QML 511
            ++
Sbjct: 432 HLI 434



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/346 (20%), Positives = 122/346 (35%), Gaps = 89/346 (25%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +H   I  G      + N LI++Y KS  L  A  LF+ IP P+             
Sbjct: 156 GKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPN------------- 202

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                               TV +N++I A   N      I+ F  MRR  ++ D  T  
Sbjct: 203 --------------------TVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTIL 242

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           ++L A  L +   K    +H  +  +G G   ++  AL+  Y K            + A+
Sbjct: 243 ALLQA-CLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKL---------GRLSAS 292

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS----ENVGVAWNALISGYVHR 269
             VF E+   D ++WT M+ GY  +     A +  + M+    E   V +  L+S   H 
Sbjct: 293 YGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHS 352

Query: 270 EL------------KMLMLRIQLDEFT------------------------------YTS 287
            L            ++  +  ++D ++                              + +
Sbjct: 353 GLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGA 412

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
           ++ AC   G   LGK+V  +L+  E      + +  N    +  WK
Sbjct: 413 LLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWK 458



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 33/126 (26%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           LA S+H  M  +GF  +  I   L+D Y K  +L  +  +F E+   D VA T ++A Y+
Sbjct: 256 LAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYA 315

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
           A     L RE                              AI+LF  M    ++PD+ TF
Sbjct: 316 AHG---LGRE------------------------------AIKLFESMANKGLEPDHVTF 342

Query: 153 TSVLSA 158
           T +LSA
Sbjct: 343 THLLSA 348


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/552 (39%), Positives = 325/552 (58%), Gaps = 23/552 (4%)

Query: 258 AWNALISGYVHR------------ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
            WN +I   VH               +M    +  D  T+  ++ +  N     LG++ H
Sbjct: 25  VWNIIIRAIVHNVSPPQRHSPISVYFRMRHHCVSPDFHTFPFLLPSFHNPIHLPLGQRTH 84

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365
           A +L       P     V  +L+ +Y  CG ++ A  IF++   +DL +WN++++AY  A
Sbjct: 85  AQILLFGLDKDPF----VRTSLLNMYSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKA 140

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL----EGF-KPCDYA 420
           GLI+ A+ LF+ M ERN++SW+ +I+G    G  +E L LF +M+L    E F  P  + 
Sbjct: 141 GLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFT 200

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
            +  +++C  LGALE G+ +H+ +   G +  +  G ALI MYA+CG +E A  VF+ + 
Sbjct: 201 MSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALG 260

Query: 481 NVDSV-SWNAMIAALGQHGNGARAIELYEQML-KEGILPDRITFLTVLSACNHAGLVKEG 538
           +   V +++AMI  L  +G      +++ +M     I P+ +TF+ +L AC H GL+ +G
Sbjct: 261 SKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKG 320

Query: 539 RRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCR 598
           + YF+ M   +GI P   HY   +DL  R+G   EA+  I S+P +P   IW +LL+G R
Sbjct: 321 KSYFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSR 380

Query: 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGC 658
           + G+I     A ++L +L P ++G YVLLSN+YA  GRW +  R+R  M  +G+KK PGC
Sbjct: 381 MLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWIEVKRIRHEMEVKGIKKVPGC 440

Query: 659 SWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYA 718
           S++EV+  VH F+V D +  E++ +Y  LE+++  +R+ GYV DTK VL D+E   KE A
Sbjct: 441 SYVEVEGVVHEFVVGDESQQESERIYAMLEEIMQRLREAGYVSDTKEVLLDLEEKDKEMA 500

Query: 719 LSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHH 778
           LS HSEKLA+AF LMK   G  VR++KNLRICGDCH   K +SK+  REIVVRD  RFHH
Sbjct: 501 LSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHH 560

Query: 779 FRDGKCSCGDYW 790
           F DG CSC D+W
Sbjct: 561 FSDGSCSCRDFW 572



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 178/417 (42%), Gaps = 65/417 (15%)

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNG---HAAIELFRDMRRDDVKPDNFTFT 153
           +  A  +F+   LK+   V +N +I A  HN +    H+ I ++  MR   V PD  TF 
Sbjct: 7   ISYANPIFHIRHLKLESFV-WNIIIRAIVHNVSPPQRHSPISVYFRMRHHCVSPDFHTFP 65

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
            +L +    +       + H  ++  G      V  +L+++Y  C           + +A
Sbjct: 66  FLLPSFHNPIHLPLG-QRTHAQILLFGLDKDPFVRTSLLNMYSSCGD---------LSSA 115

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV----HR 269
            R+FDE   +D  +W +++  Y K   ++ AR+  D M E   ++W+ LI+GYV    ++
Sbjct: 116 LRIFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYK 175

Query: 270 ELKMLMLRIQL----------DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
           E   L   +QL          ++FT ++V+SAC   G    GK VH+Y+     K   E 
Sbjct: 176 EALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYI----DKYGVEI 231

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQM-PERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
            + +  AL+ +Y KCG +  A+ +F+ +  ++D+ +++A++      GL DE   +F  M
Sbjct: 232 DIVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQVFSEM 291

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
              N                                 P    F G + +C   G +  G+
Sbjct: 292 TTSN------------------------------NINPNSVTFVGILGACVHRGLINKGK 321

Query: 439 QLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAA 493
                +    G   S+     ++ +Y R G+++ A     +MP   D + W ++++ 
Sbjct: 322 SYFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSG 378



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/407 (23%), Positives = 178/407 (43%), Gaps = 49/407 (12%)

Query: 27  NPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTT 86
           NPI   L +  HA ++  G      +   L+++Y     L  A  +FDE    D+ A  +
Sbjct: 73  NPIHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVSKDLPAWNS 132

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD-- 144
           ++ AY+ +  +  AR++F++ P   R+ + ++ +I  Y        A++LFR+M+     
Sbjct: 133 VVNAYAKAGLINHARKLFDEMP--ERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPN 190

Query: 145 ---VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSS 201
              V P+ FT ++VLSA   +   E Q   +H  + K G  +   +  ALI +Y KC S 
Sbjct: 191 EVFVSPNKFTMSTVLSACGRLGALE-QGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGS- 248

Query: 202 PFVSSRSLMGAARRVFDEM-PERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWN 260
                   +  A+RVFD +  ++D  +++ M+         D   +    M+ +  +  N
Sbjct: 249 --------LERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPN 300

Query: 261 ALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
           ++                     T+  ++ AC + GL   GK  +  ++  E   TP  S
Sbjct: 301 SV---------------------TFVGILGACVHRGLINKGKS-YFKMMTEEFGITP--S 336

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
           +     +V LY + G + EA      MP E D++ W ++LS     G I   +   + + 
Sbjct: 337 IQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLI 396

Query: 380 ERNLL---SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP---CDYA 420
           E + +   ++ ++ +  A+ G   E  ++  +M ++G K    C Y 
Sbjct: 397 ELDPMNSGAYVLLSNVYAKTGRWIEVKRIRHEMEVKGIKKVPGCSYV 443


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 243/800 (30%), Positives = 403/800 (50%), Gaps = 114/800 (14%)

Query: 11  TLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYAR 70
           T    ++   Q C  R  +     +  HA MI + FKP   + N LI +Y K   L +A 
Sbjct: 40  TKKKTFSHIFQECSDRKALCP--GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAF 97

Query: 71  TLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNG 130
            +FD +PQ D V+   ++  Y+   ++ +A+++F+  P   RD V +N++I+ Y HN + 
Sbjct: 98  KVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMP--ERDVVSWNSLISGYLHNGDH 155

Query: 131 HAAIELFRDMRRDDVKPDNFTFTSVLSALA----------------------------LI 162
              I++F  M R     D  TF  VL + +                             +
Sbjct: 156 RKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSAL 215

Query: 163 VEEEKQCMQMHCTV--------------------------VKSGTGLFTSVLNALISVYV 196
           ++   +C ++ C++                          ++ G  LF  +  A + V  
Sbjct: 216 LDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQ 275

Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPER--------DELSWTTMMTGYVKNDYLDAAREFL 248
              +S F S   L  +A R+  ++           D +  T  +  Y+K + L  A++  
Sbjct: 276 STFASVFRSCAGL--SALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLF 333

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
           + +  +   ++NA+I GY   +  +      LDE + +    ACA       G QVH   
Sbjct: 334 NSLPNHNLQSYNAIIVGYARSDKGL-----GLDEVSLSGAFRACAVIKGDLEGLQVHGLS 388

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA------- 361
           +++  +     ++ V NA++ +Y KCG + EA  +F +M  RD VSWNAI++A       
Sbjct: 389 MKSLCQS----NICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNE 444

Query: 362 ------------------------------YVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
                                         Y   G++++A+ L + + E+ ++SW  +IS
Sbjct: 445 EKTLSLFIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIIS 504

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
           G +     EE  K FS+M   G  P ++ +A  + +CA L  +E G+Q+HAQ++     S
Sbjct: 505 GFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQS 564

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
                + L+ MY++CG ++    +F   PN D V+WNAM+    QHG G  A++++E M 
Sbjct: 565 DAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQ 624

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571
            E + P+  TFL VL AC H GLV++G  YF +M   YG+ P  +HY+  +D++ R+G+ 
Sbjct: 625 LENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQV 684

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631
           S+A ++I+ +PF+  A IW  LL+ C+IHGN+++  +AA  + QL P  +  YVLLSN+Y
Sbjct: 685 SKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIY 744

Query: 632 ANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLV 691
           AN G W++  ++RK+MR  G+KKEPGCSWIE+ ++VH FLV D AHP ++ +Y+ L+ L 
Sbjct: 745 ANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEIYENLDVLT 804

Query: 692 LEMRKLGYVPDTKFVLHDME 711
            EM+ +GY+PDT F+L+D E
Sbjct: 805 DEMKWVGYMPDTDFILNDDE 824


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/592 (39%), Positives = 340/592 (57%), Gaps = 50/592 (8%)

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL---ISGYVHRE 270
           R + +   ++D    T ++  Y   D +D AR+  D         +NAL   +S   H E
Sbjct: 94  RHLLENGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGE 153

Query: 271 LKMLMLR------IQLDEFTYTSVISACANS----GLFRLGKQVHAYLLRTEAKPTPEFS 320
             + M R      I  D FTYT V+ AC  S     L   G+++HA++LR       +  
Sbjct: 154 EVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGY----DGY 209

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           + +   LV +Y K G V+ A  +FNQ                               M  
Sbjct: 210 VHIMTTLVDMYAKFGCVSNASCVFNQ-------------------------------MPV 238

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE--GFKPCDYAFAGAITSCAGLGALENGR 438
           +N++SW+ MI+  A+NG   E L+LF ++ LE     P        + +CA L ALE GR
Sbjct: 239 KNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGR 298

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
            +H  ++  G DS L   +AL+TMYARCG +E    VF+ M   D VSWN++I++ G HG
Sbjct: 299 LIHGYILRKGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHG 358

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
            G +AI ++E+M   G+ P  I+F++VL AC+HAGLV EG+  F +MH  +GI P  +HY
Sbjct: 359 FGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHY 418

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
           A  +DLL RA +  EA  +I+++  +P   +W +LL  CRIH N++L  +A+ +LF L P
Sbjct: 419 ACMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSLLGSCRIHCNVELAERASIRLFDLEP 478

Query: 619 HHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHP 678
            +AG YVLL+++YA  G WD   RV+KL+  RG++K PG SWIEV  K++ F+  D  +P
Sbjct: 479 TNAGNYVLLADIYAEAGMWDGVKRVKKLLEARGLQKVPGRSWIEVKRKIYSFVSVDEVNP 538

Query: 679 EAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGG 738
             + ++  L +L +E+++ GYVP TK VL+D+++ +KE  +  HSEKLAVAFGL+    G
Sbjct: 539 RMEQLHALLVKLSMELKEEGYVPQTKVVLYDLKAAEKERIVLGHSEKLAVAFGLINSSKG 598

Query: 739 ATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             +R+ K+LR+C DCH+  KF+SK   +EI+VRD  RFHHFRDG CSCGDYW
Sbjct: 599 EVIRITKSLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRDGVCSCGDYW 650



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 199/451 (44%), Gaps = 87/451 (19%)

Query: 70  RTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSN 129
           R L +     D    T LI  YS  D++  AR++F+KT  + R    YNA+  A S   +
Sbjct: 94  RHLLENGFDQDPFLATKLINMYSFFDSIDNARKVFDKT--RNRTIYVYNALFRALSLAGH 151

Query: 130 GHAAIELFRDMRRDDVKPDNFTFTSVLSALA---LIVEEEKQCMQMHCTVVKSGTGLFTS 186
           G   + ++R M    +  D FT+T VL A       V    +  ++H  +++ G   +  
Sbjct: 152 GEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVH 211

Query: 187 VLNALISVYVK--CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAA 244
           ++  L+ +Y K  CVS+           A  VF++MP ++ +SW+ M+  Y KN      
Sbjct: 212 IMTTLVDMYAKFGCVSN-----------ASCVFNQMPVKNVVSWSAMIACYAKN------ 254

Query: 245 REFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304
                      G A+ AL    + REL +    +  +  T  SV+ ACA       G+ +
Sbjct: 255 -----------GKAFEAL---ELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLI 300

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVS 364
           H Y+LR          LPV +ALVT+Y +CGK+   + +F+QM +RD+VSWN+++S+Y  
Sbjct: 301 HGYILRKGLDSI----LPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSY-- 354

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
                                          +G+G++ + +F +M   G +P   +F   
Sbjct: 355 -----------------------------GVHGFGKKAIGIFEEMTYNGVEPSPISFVSV 385

Query: 425 ITSCAGLGALENGRQLHAQL-VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM---- 479
           + +C+  G ++ G+ L   + V  G   S+     ++ +  R   +E A  +   M    
Sbjct: 386 LGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEP 445

Query: 480 -PNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
            P V    W +++ +   H N    +EL E+
Sbjct: 446 GPKV----WGSLLGSCRIHCN----VELAER 468



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 155/347 (44%), Gaps = 51/347 (14%)

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
           G + + L++L L     + TY  +I +C +       ++VH +LL       P  +    
Sbjct: 53  GNLTQALELLSLEPNPAQHTYELLILSCTHQNSLLDAQRVHRHLLENGFDQDPFLA---- 108

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
             L+ +Y     ++ AR +F++   R +  +NA+  A                       
Sbjct: 109 TKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRA----------------------- 145

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG----LGALENGRQL 440
                   L+  G+GEE L ++ +M   G     + +   + +C      +  L  GR++
Sbjct: 146 --------LSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREI 197

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           HA ++  GYD  +     L+ MYA+ G V  A+CVFN MP  + VSW+AMIA   ++G  
Sbjct: 198 HAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKA 257

Query: 501 ARAIELYEQMLKE--GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH- 557
             A+EL+ +++ E   + P+ +T ++VL AC     +++GR     +HG Y +  G D  
Sbjct: 258 FEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGR----LIHG-YILRKGLDSI 312

Query: 558 ---YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
               +  + +  R GK    + V D +  K     W +L++   +HG
Sbjct: 313 LPVISALVTMYARCGKLELGQRVFDQMD-KRDVVSWNSLISSYGVHG 358



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 125/293 (42%), Gaps = 69/293 (23%)

Query: 16  YASQLQLCDPRNPITSSL--ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF 73
           Y   L+ C       S L   R +HAH++  G+    HI+  L+D+Y K   +  A  +F
Sbjct: 174 YTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVF 233

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
           +++P  ++V+ + +IA Y+                                  N     A
Sbjct: 234 NQMPVKNVVSWSAMIACYAK---------------------------------NGKAFEA 260

Query: 134 IELFRD--MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
           +ELFR+  +   D+ P++ T  SVL A A +   E Q   +H  +++ G      V++AL
Sbjct: 261 LELFRELMLETQDLCPNSVTMVSVLQACAALAALE-QGRLIHGYILRKGLDSILPVISAL 319

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           +++Y +C           +   +RVFD+M +RD +SW ++++ Y  + +   A    + M
Sbjct: 320 VTMYARC---------GKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEM 370

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304
           + N                       ++    ++ SV+ AC+++GL   GK +
Sbjct: 371 TYN----------------------GVEPSPISFVSVLGACSHAGLVDEGKML 401



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 98/215 (45%), Gaps = 18/215 (8%)

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG 448
           +I  L + G   + L+L S   LE   P  + +   I SC    +L + +++H  L+ +G
Sbjct: 45  LIQSLCKQGNLTQALELLS---LEP-NPAQHTYELLILSCTHQNSLLDAQRVHRHLLENG 100

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
           +D        LI MY+    ++ A  VF+   N     +NA+  AL   G+G   + +Y 
Sbjct: 101 FDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYR 160

Query: 509 QMLKEGILPDRITFLTVLSACNHA----GLVKEGRRYFETMHGPYGIPPGEDHYAR---- 560
           +M   GI  DR T+  VL AC  +     L+ +GR     +H  + +  G D Y      
Sbjct: 161 RMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGRE----IHA-HILRHGYDGYVHIMTT 215

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
            +D+  + G  S A  V + +P K +   W A++A
Sbjct: 216 LVDMYAKFGCVSNASCVFNQMPVK-NVVSWSAMIA 249


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 241/688 (35%), Positives = 356/688 (51%), Gaps = 90/688 (13%)

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMH 173
           T  +NA +   +   +   A+ L+  M      P+ FTF     + A +        Q+H
Sbjct: 21  TASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASL-SLPLAGSQLH 79

Query: 174 CTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMT 233
             V+K+G      V  +LIS+Y KC         S + +AR+VFDE              
Sbjct: 80  GHVIKTGCEPEPFVQTSLISMYCKC---------STIASARKVFDE-------------- 116

Query: 234 GYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL---KMLMLR------IQLDEFT 284
                          +  S N+ V +NALI+GY         +L+ R      + ++  T
Sbjct: 117 ---------------NHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVT 161

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
              +I  CA       G  +HA  +R        F L                       
Sbjct: 162 MLGLIPVCAGPIHLGFGTSLHACSVR--------FGL----------------------- 190

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
               + DL   N +L+ YV  G +D A+ LF+ M E+ L++W  MISG AQNG     L 
Sbjct: 191 ----DGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLD 246

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           L+ +M   G  P      G ++SCA LGA   GR++  ++  SG+  +    NALI MYA
Sbjct: 247 LYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYA 306

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           RCG +  A  +F+ M   + +SW A+IA  G HG G  A++L+++M+    LPD   F++
Sbjct: 307 RCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVS 366

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584
           VLSAC+HAGL ++G  YF  M   YG+ PG +HY+  +DLL RAG+  EA+ +I S+  +
Sbjct: 367 VLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVE 426

Query: 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVR 644
           P   +W ALL  C+IH N++L   A E++ +  P + G YVLLSN+++  G  +   RVR
Sbjct: 427 PDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVR 486

Query: 645 KLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTK 704
            +MR+R +KKEPGCS++E   ++H+FL  D  HP+AQ +Y  L+ L   +++ G   D  
Sbjct: 487 VMMRERKLKKEPGCSYVEYQGRIHLFLAGDRTHPQAQEIYHMLDGLEDIIKRRGGSND-- 544

Query: 705 FVLHDMESDQKEY--ALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSK 762
              +D ES  +E    +  HSEKLA+AFGL+    G  + V+KNLR+CGDCH   K +S+
Sbjct: 545 ---NDQESRNEELITGMGVHSEKLAIAFGLINTEPGTEITVIKNLRVCGDCHLFLKLVSE 601

Query: 763 VVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +V R++VVRD  RFHHF++G CSC DYW
Sbjct: 602 IVDRQLVVRDATRFHHFKNGVCSCKDYW 629



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/374 (28%), Positives = 172/374 (45%), Gaps = 50/374 (13%)

Query: 253 ENVGVAWNALISGYVHRE---------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ 303
           +N   +WNA +     +           +ML      + FT+     +CA+  L   G Q
Sbjct: 18  QNTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQ 77

Query: 304 VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ-MPERDL-VSWNAILSA 361
           +H ++++T  +P P     V  +L+++Y KC  +  AR +F++    R+L V +NA+++ 
Sbjct: 78  LHGHVIKTGCEPEPF----VQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAG 133

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
           Y                               + N    + + LF QMR EG        
Sbjct: 134 Y-------------------------------SLNSRFSDAVLLFRQMRKEGVSVNAVTM 162

Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
            G I  CAG   L  G  LHA  V  G D  LS GN L+TMY RCG V+ A  +F+ MP 
Sbjct: 163 LGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPE 222

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY 541
              ++WNAMI+   Q+G     ++LY +M   GI+PD +T + VLS+C H G    GR  
Sbjct: 223 KGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREV 282

Query: 542 FETMH-GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
            + +    +G  P   +    I++  R G   +A+ + D +  K +   W A++AG  +H
Sbjct: 283 EQRIELSGFGFNPFLKN--ALINMYARCGNLVKARAIFDGMTEK-NVISWTAIIAGYGMH 339

Query: 601 GNIDLGIQAAEQLF 614
           G  +L +Q  +++ 
Sbjct: 340 GQGELAVQLFDEMI 353



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 117/417 (28%), Positives = 194/417 (46%), Gaps = 47/417 (11%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYART-----LFDEIPQPDIVARTTLI 88
           A +++  M++SG  P            C SL L  A +     +     +P+   +T+LI
Sbjct: 40  ALNLYCQMLASGDSPNAFTFPFAFK-SCASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLI 98

Query: 89  AAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPD 148
           + Y     +  AR++F++        V YNA+I  YS NS    A+ LFR MR++ V  +
Sbjct: 99  SMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVN 158

Query: 149 NFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
             T   ++   A  +        +H   V+ G     SV N L+++YV+C S  F     
Sbjct: 159 AVTMLGLIPVCAGPIHLGFG-TSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDF----- 212

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
               AR++FD MPE+  ++W  M++GY +N                 G+A + L    ++
Sbjct: 213 ----ARKLFDGMPEKGLITWNAMISGYAQN-----------------GLAGHVL---DLY 248

Query: 269 RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALV 328
           R  KM    I  D  T   V+S+CA+ G    G++V     R E      F+  + NAL+
Sbjct: 249 R--KMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQ---RIELSGFG-FNPFLKNALI 302

Query: 329 TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL---- 384
            +Y +CG + +AR IF+ M E++++SW AI++ Y   G  + A  LF+ M   + L    
Sbjct: 303 NMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGA 362

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQM-RLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
           ++  ++S  +  G  E+GL  F+ M R  G +P    ++  +      G LE  R+L
Sbjct: 363 AFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKL 419


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/470 (42%), Positives = 301/470 (64%), Gaps = 2/470 (0%)

Query: 323 VNNALVTLYWKCGKVNEARDIFNQM-PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
           V  AL+ +Y + G    AR +F+ M P+  +VS  A+L+ Y   G +D+A+SLF+ +  +
Sbjct: 423 VATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTK 482

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
           + + W  MI G  Q+G   E L+LF +M   G +P +      +++ A LG +E+G+ LH
Sbjct: 483 DFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLH 542

Query: 442 AQLVHSG-YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           + + +S     S+  G ALI MY +CG +  A  VF+ + + D V WNAMI     HG+ 
Sbjct: 543 SYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDS 602

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
            +A+E++ Q  ++G+ P  ITF+ +L+AC+H+G+V+EGR +F++M   YGI P  +HY  
Sbjct: 603 RKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGC 662

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
            +DLL RAG   EA  ++ S+   P A +W +LLA CR+H N+ LG Q A+ L      +
Sbjct: 663 MVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLAN 722

Query: 621 AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEA 680
           +G Y+LLSN+YA +G W + ARVR +M+  G++KEPGCS IE+D +V+ F+  D +HP  
Sbjct: 723 SGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREVYEFVAGDMSHPRT 782

Query: 681 QAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT 740
             +Y  L+++   +++ G+VP T+ VLHD++   KE AL+ HSEKLA+AFGL+    GAT
Sbjct: 783 DEIYVMLDKMNGLVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLALAFGLISTQPGAT 842

Query: 741 VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           ++++KNLR C DCH   K +S++ GR+IV RD  RFHHF DG CSCGDYW
Sbjct: 843 IKIVKNLRACSDCHAVLKLISRITGRKIVFRDRNRFHHFVDGSCSCGDYW 892



 Score =  150 bits (378), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 116/442 (26%), Positives = 199/442 (45%), Gaps = 69/442 (15%)

Query: 90  AYSASDNVKLAREMFNKTPLKMRD--TVFYNAMITAYSHNSNGH--AAIELFRDMRRDDV 145
           AY+AS  + L+  +  +T    RD   +FY + I  ++H+S GH   A+ L  DM    +
Sbjct: 332 AYAASGRLDLSLALLRRT----RDPTAIFYTSAI--HAHSSRGHRLPALALLSDMLAQGL 385

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVS 205
            P   T ++ L A   +         +H    K      + V  AL+ +Y +   +    
Sbjct: 386 LPTAHTLSASLPACRGLSPGRA----LHGYAFKLALAGDSYVATALLGMYARAGDAT--- 438

Query: 206 SRSLMGAARRVFDEM-PERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                 AAR +FD+M P+   +S T M+T Y     LD AR   DG+     V WNA+I 
Sbjct: 439 ------AARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMID 492

Query: 265 GYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           GY              +ML   ++ DE T   V+SA A  G    GK +H+Y+  +    
Sbjct: 493 GYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSR--- 549

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
             + S+ V  AL+ +Y KCG + +A D+F+ + ++D+V WNA+++ Y             
Sbjct: 550 RVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGY------------- 596

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
                             A +G   + L++F Q R +G  P D  F G + +C+  G +E
Sbjct: 597 ------------------AMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVE 638

Query: 436 NGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAA 493
            GR+    +    G D  +     ++ +  R G+++ A C+  +M    D+V W +++AA
Sbjct: 639 EGREFFQSMEREYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAA 698

Query: 494 LGQHGNGARAIELYEQMLKEGI 515
              H N +   ++ + ++ +G+
Sbjct: 699 CRLHKNMSLGQQIADYLVAKGL 720



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 155/355 (43%), Gaps = 51/355 (14%)

Query: 13  ANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTL 72
           A+  ++ L  C   +P      R++H +          ++   L+ +Y ++     AR L
Sbjct: 389 AHTLSASLPACRGLSP-----GRALHGYAFKLALAGDSYVATALLGMYARAGDATAARAL 443

Query: 73  FDE-IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           FD+ +P P +V+ T ++  Y+    +  AR +F+  P K  D V +NAMI  Y+ +   +
Sbjct: 444 FDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTK--DFVCWNAMIDGYTQHGRPN 501

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALALI--VEEEKQCMQMHCTVVKS-GTGLFTSVL 188
            A+ LFR M    V+PD  T   VLSA+A +  VE  K    +H  V  S    L   V 
Sbjct: 502 EALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGK---WLHSYVKNSRRVQLSVRVG 558

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY-VKNDYLDAAREF 247
            ALI +Y KC S         +G A  VF  + ++D + W  M+ GY +  D   A   F
Sbjct: 559 TALIDMYCKCGS---------LGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMF 609

Query: 248 LDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY 307
           +    + +   W                      + T+  +++AC++SG+   G++    
Sbjct: 610 VQSREQGL---WPT--------------------DITFIGLLNACSHSGMVEEGREFFQS 646

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
           + R E    P+  +     +V L  + G + EA  +   M    D V W ++L+A
Sbjct: 647 MER-EYGIDPK--IEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAA 698



 Score = 40.0 bits (92), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 98/239 (41%), Gaps = 24/239 (10%)

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA--LITMYARCGVVEAANCVFNTMPNV 482
           +TSC+         +LHA ++ +G   +     A  L   YA  G ++ +  +     + 
Sbjct: 296 LTSCS---TARRAAELHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRRTRDP 352

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
            ++ + + I A    G+   A+ L   ML +G+LP   T    L AC   GL   GR   
Sbjct: 353 TAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLPACR--GL-SPGR--- 406

Query: 543 ETMHG-PYGIPPGEDHY--ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI 599
             +HG  + +    D Y     + +  RAG  + A+ + D +   P      A+L     
Sbjct: 407 -ALHGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYAD 465

Query: 600 HGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM---YANLGRWDDAARVRKLMRDRGVKKE 655
            G +D     A  LF  +P     +V  + M   Y   GR ++A R+ + M   GV+ +
Sbjct: 466 MGALD----DARSLFDGLP--TKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPD 518


>gi|449451241|ref|XP_004143370.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Cucumis sativus]
          Length = 908

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 254/772 (32%), Positives = 400/772 (51%), Gaps = 91/772 (11%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L   VH  ++  G      I N L+ +YCK   L     LF+E+P+ DI +  T+I++  
Sbjct: 214 LGSQVHGIVVKLGLLSCVFICNALMGLYCKCGFLDLVLRLFEEMPERDITSWNTVISS-- 271

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR-DDVKPDNFT 151
                                      ++  + ++     A + FR M+    +K D+F+
Sbjct: 272 ---------------------------LVKEFKYDE----AFDYFRGMQLCKGLKVDHFS 300

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
            +++L+A A  V+  K   Q+H   +K G     SV ++LI  Y KC S+  V+      
Sbjct: 301 LSTLLTACAGSVKPMKG-QQLHALALKVGLESHLSVSSSLIGFYTKCGSANDVTD----- 354

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE- 270
               +F+ MP RD ++WT M+T Y++   LD+A E  + M +   +++NA+++G    + 
Sbjct: 355 ----LFETMPIRDVITWTGMITSYMEFGMLDSAVEVFNKMPKRNCISYNAVLAGLSRNDD 410

Query: 271 --------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
                   ++ML   +++ + T TS+I+AC     F++ +Q+  ++++            
Sbjct: 411 GSRALELFIEMLEEGVEISDCTLTSIITACGLLKSFKVSQQIQGFVMKFGILSNS----C 466

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
           +  ALV +Y +CG++ +A  IF Q   E D   + A+L                      
Sbjct: 467 IETALVDMYTRCGRMEDAEKIFYQRSLEND---YTAML---------------------- 501

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS-CAGLGALENGRQL 440
                T MI G A+NG   E + LF   + EG    D   + +I S C  +G  E G+Q+
Sbjct: 502 -----TSMICGYARNGKLNEAISLFHSGQSEGAIVMDEVMSTSILSLCGSIGFHEMGKQM 556

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           H   + SG  +    GNA ++MY++C  ++ A  VFNTM   D VSWN ++A    H  G
Sbjct: 557 HCHALKSGLITETGVGNATVSMYSKCWNMDDAVRVFNTMNMQDIVSWNGLVAGHVLHWQG 616

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHA--GLVKEGRRYFETMHGPYGIPPGEDHY 558
            +A+ ++++M K GI PD ITF  ++SA  H    LV   R  F +M   + I P  +HY
Sbjct: 617 DKALGIWKKMEKAGIKPDSITFALIISAYKHTELNLVDSCRSLFVSMETEHNIKPTLEHY 676

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
           A FI +L R G   EA+  I ++P +P   +W ALL  CRI+ N  L   AA  +  + P
Sbjct: 677 ASFISVLGRWGLLEEAEQTIRNMPLEPDVYVWRALLNSCRINKNERLEKLAARNILAVEP 736

Query: 619 HHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHP 678
               +Y+L SN+Y+  GRW  + +VR+ MR++G +K P  SWI  +NK+H F   D +HP
Sbjct: 737 KDPLSYILKSNLYSASGRWYYSEKVREDMREKGFRKHPSQSWIIHENKIHSFYARDRSHP 796

Query: 679 EAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGG 738
           + + +Y  LE L+LE  K+GYVPDT FVL ++E  QK+  L  HS KLA  FG++    G
Sbjct: 797 QGKDIYSGLEILILECLKVGYVPDTSFVLQEVEERQKKEFLFYHSGKLAATFGILMTKPG 856

Query: 739 ATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             ++++KN+R+CGDCHN  K++S V  R+I++RD   FH F DG+CSC DYW
Sbjct: 857 KPIQIVKNVRLCGDCHNFLKYVSIVTRRKILLRDTSGFHWFIDGQCSCTDYW 908



 Score =  208 bits (530), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 135/466 (28%), Positives = 234/466 (50%), Gaps = 40/466 (8%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + DI     LI+AY     V+ A ++F  + L   + V Y A+I+ +S +     A+ELF
Sbjct: 127 EEDIFLGNALISAYLKLGLVRDADKVF--SGLSCPNVVSYTALISGFSKSDWEDEAVELF 184

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
             M    ++P+ +TF ++L+A    ++ +    Q+H  VVK G      + NAL+ +Y K
Sbjct: 185 FAMLDSGIEPNEYTFVAILTACIRNMDYQLGS-QVHGIVVKLGLLSCVFICNALMGLYCK 243

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C           +    R+F+EMPERD  SW T+++  VK    D A ++  GM    G 
Sbjct: 244 C---------GFLDLVLRLFEEMPERDITSWNTVISSLVKEFKYDEAFDYFRGMQLCKG- 293

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                               +++D F+ +++++ACA S     G+Q+HA  L+       
Sbjct: 294 --------------------LKVDHFSLSTLLTACAGSVKPMKGQQLHALALKVGL---- 329

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
           E  L V+++L+  Y KCG  N+  D+F  MP RD+++W  ++++Y+  G++D A  +F  
Sbjct: 330 ESHLSVSSSLIGFYTKCGSANDVTDLFETMPIRDVITWTGMITSYMEFGMLDSAVEVFNK 389

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
           M +RN +S+  +++GL++N  G   L+LF +M  EG +  D      IT+C  L + +  
Sbjct: 390 MPKRNCISYNAVLAGLSRNDDGSRALELFIEMLEEGVEISDCTLTSIITACGLLKSFKVS 449

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF--NTMPNVDSVSWNAMIAALG 495
           +Q+   ++  G  S+     AL+ MY RCG +E A  +F   ++ N  +    +MI    
Sbjct: 450 QQIQGFVMKFGILSNSCIETALVDMYTRCGRMEDAEKIFYQRSLENDYTAMLTSMICGYA 509

Query: 496 QHGNGARAIELYEQMLKEG-ILPDRITFLTVLSACNHAGLVKEGRR 540
           ++G    AI L+     EG I+ D +   ++LS C   G  + G++
Sbjct: 510 RNGKLNEAISLFHSGQSEGAIVMDEVMSTSILSLCGSIGFHEMGKQ 555


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/510 (40%), Positives = 313/510 (61%), Gaps = 4/510 (0%)

Query: 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
           D +T+T ++  CA       G  VH  +++   +  P     V   LV +Y + G ++  
Sbjct: 111 DNYTFTFLVRTCAQLQAHVTGLCVHGAVIKHGFELDPH----VQTGLVFMYAELGCLSSC 166

Query: 341 RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGE 400
            ++F+   E DLV+  A+L+A    G ID A+ +F+ M ER+ ++W  MI+G AQ G   
Sbjct: 167 HNVFDGAVEPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSR 226

Query: 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALI 460
           E L +F  M++EG K  + +    +++C  L  L++GR +HA +       +++ G AL+
Sbjct: 227 EALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALV 286

Query: 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI 520
            MYA+CG V+ A  VF  M   +  +W++ I  L  +G G  +++L+  M +EG+ P+ I
Sbjct: 287 DMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGI 346

Query: 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580
           TF++VL  C+  GLV+EGR++F++M   YGI P  +HY   +D+  RAG+  EA + I+S
Sbjct: 347 TFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINS 406

Query: 581 LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA 640
           +P +P    W ALL  CR++ N +LG  A  ++ +L   + G YVLLSN+YA+   W+  
Sbjct: 407 MPMRPHVGAWSALLHACRMYKNKELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESV 466

Query: 641 ARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYV 700
           + +R+ M+ +GVKK PGCS IEVD +VH F+V D +HP    +   LE++   +R  GYV
Sbjct: 467 SSLRQTMKAKGVKKLPGCSVIEVDGEVHEFIVGDKSHPRYDEIEMKLEEISKCLRLSGYV 526

Query: 701 PDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFM 760
            +T  VL D+E ++KE ALS HSEK+A+AFGL+ L G   +RV+ NLRIC DCHN  K +
Sbjct: 527 ANTNPVLFDIEEEEKEDALSKHSEKVAIAFGLISLKGVVPIRVVMNLRICWDCHNVAKMI 586

Query: 761 SKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           SK+  REI+VRD  RFHHF+DG+CSC DYW
Sbjct: 587 SKIFNREIIVRDRNRFHHFKDGECSCKDYW 616



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 125/456 (27%), Positives = 206/456 (45%), Gaps = 68/456 (14%)

Query: 62  KSLKLVYARTLFDEI-PQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVF-YNA 119
           K +K ++A+ +   I   P    +     A   + N+  A ++ N        T+F  N+
Sbjct: 23  KEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNLDYANKLLNHNN---NPTLFTLNS 79

Query: 120 MITAYSHNSNGHAAIELFRDM---RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTV 176
           MI AYS +S    +   + ++     +++ PDN+TFT ++   A + +     + +H  V
Sbjct: 80  MIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQL-QAHVTGLCVHGAV 138

Query: 177 VKSGTGLFTSVLNALISVYVK--CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTG 234
           +K G  L   V   L+ +Y +  C+SS              VFD   E D ++ T M+  
Sbjct: 139 IKHGFELDPHVQTGLVFMYAELGCLSS-----------CHNVFDGAVEPDLVTQTAMLNA 187

Query: 235 YVKNDYLDAAREFLDGMSENVGVAWNALISGYVH----REL-----KMLMLRIQLDEFTY 285
             K   +D AR+  D M E   V WNA+I+GY      RE       M M  ++L+E + 
Sbjct: 188 CAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSM 247

Query: 286 TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFN 345
             V+SAC +  +   G+ VHAY+ R + + T    + +  ALV +Y KCG V+ A  +F 
Sbjct: 248 VLVLSACTHLQVLDHGRWVHAYVERYKVRMT----VTLGTALVDMYAKCGNVDRAMQVFW 303

Query: 346 QMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKL 405
            M ER++ +W++                                I GLA NG+GEE L L
Sbjct: 304 GMKERNVYTWSS-------------------------------AIGGLAMNGFGEESLDL 332

Query: 406 FSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYA 464
           F+ M+ EG +P    F   +  C+ +G +E GR+    + +  G    L     ++ MY 
Sbjct: 333 FNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYG 392

Query: 465 RCGVVEAANCVFNTMPNVDSV-SWNAMIAALGQHGN 499
           R G ++ A    N+MP    V +W+A++ A   + N
Sbjct: 393 RAGRLKEALNFINSMPMRPHVGAWSALLHACRMYKN 428



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 99/413 (23%), Positives = 181/413 (43%), Gaps = 49/413 (11%)

Query: 7   DYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKL 66
           +Y  T   R  +QLQ               VH  +I  GF+   H+   L+ +Y +   L
Sbjct: 112 NYTFTFLVRTCAQLQ--------AHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCL 163

Query: 67  VYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSH 126
                +FD   +PD+V +T ++ A +   ++  AR+MF++ P   RD V +NAMI  Y+ 
Sbjct: 164 SSCHNVFDGAVEPDLVTQTAMLNACAKCGDIDFARKMFDEMP--ERDHVTWNAMIAGYAQ 221

Query: 127 NSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS 186
                 A+++F  M+ + VK +  +   VLSA   + +       +H  V +    +  +
Sbjct: 222 CGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHL-QVLDHGRWVHAYVERYKVRMTVT 280

Query: 187 VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAARE 246
           +  AL+ +Y KC +         +  A +VF  M ER+  +W++ + G   N + + + +
Sbjct: 281 LGTALVDMYAKCGN---------VDRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLD 331

Query: 247 FLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
             + M                 RE       +Q +  T+ SV+  C+  GL   G++ H 
Sbjct: 332 LFNDMK----------------RE------GVQPNGITFISVLKGCSVVGLVEEGRK-HF 368

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV-SWNAILSA---Y 362
             +R      P+  L     +V +Y + G++ EA +  N MP R  V +W+A+L A   Y
Sbjct: 369 DSMRNVYGIGPQ--LEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHACRMY 426

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
            +  L + A+     + ++N  ++ ++ +  A     E    L   M+ +G K
Sbjct: 427 KNKELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKGVK 479



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 100/497 (20%), Positives = 188/497 (37%), Gaps = 101/497 (20%)

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVS-------WNAILSAYVSAGLIDEAKSLFEAMRE 380
           ++L   C  + E + I  Q+  + +++       + A ++ + +  L D A  L      
Sbjct: 13  ISLLNSCTTLKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNL-DYANKLLNHNNN 71

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQM---RLEGFKPCDYAFAGAITSCAGLGALENG 437
             L +   MI   +++    +    ++ +         P +Y F   + +CA L A   G
Sbjct: 72  PTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVTG 131

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMY-------------------------------ARC 466
             +H  ++  G++        L+ MY                               A+C
Sbjct: 132 LCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKC 191

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G ++ A  +F+ MP  D V+WNAMIA   Q G    A++++  M  EG+  + ++ + VL
Sbjct: 192 GDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVL 251

Query: 527 SACNHAGLVKEGR---RYFETMHGPYGIPPGE---DHYARF------------------- 561
           SAC H  ++  GR    Y E       +  G    D YA+                    
Sbjct: 252 SACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVY 311

Query: 562 -----IDLLCRAGKFSEAKDVIDSLP---FKPSAPIWEALLAGCRIHGNIDLG---IQAA 610
                I  L   G   E+ D+ + +     +P+   + ++L GC + G ++ G     + 
Sbjct: 312 TWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSM 371

Query: 611 EQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVF 670
             ++ + P     Y L+ +MY   GR  +A      +    ++   G +W          
Sbjct: 372 RNVYGIGP-QLEHYGLMVDMYGRAGRLKEAL---NFINSMPMRPHVG-AW---------- 416

Query: 671 LVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTK----FVLHDMESDQKEYALSTHSEKL 726
               +A   A  +YK  E   +  RK+  + D       +L ++ +D K +   +   + 
Sbjct: 417 ----SALLHACRMYKNKELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESVSSLRQT 472

Query: 727 AVAFGLMKLPGGATVRV 743
             A G+ KLPG + + V
Sbjct: 473 MKAKGVKKLPGCSVIEV 489


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 247/781 (31%), Positives = 381/781 (48%), Gaps = 105/781 (13%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + D V  T+L+  Y     +  A + F+  P+  RD V +++++  +  N      +++F
Sbjct: 132 ESDAVVETSLLCMYGEMSCLDDACKAFDTMPI--RDVVAWSSIVLNFVQNGQASEGLDMF 189

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
             M  + V+PD+ T  SV  A + +    +    +H  VV+       S+ N+LI +Y K
Sbjct: 190 SQMISEAVEPDSVTMLSVTEACSEL-GSLRLGRSVHGYVVRREIESNASLNNSLIVMYGK 248

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
                       + +A R+F+ +P R    WT M++ Y ++     A      M E    
Sbjct: 249 LGD---------LYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQE---- 295

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                              +++ ++ T   V+ ACA  G  + G+ VH +++R    P  
Sbjct: 296 ------------------FKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPEL 337

Query: 318 EFSLPVN----------------------------NALVTLYWKCGKVNEARDIFNQMPE 349
           +F  P                              N L++++ + G+  EA  +F QM  
Sbjct: 338 DFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQT 397

Query: 350 RDLVS--------------------------------------WNAILSAYVSAGLIDEA 371
           + L+                                        NA++  Y   G +  A
Sbjct: 398 QGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQNALIDMYAKCGFVHSA 457

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
             +FE ++E++L++W  MI G +QNGY  E + LF QM +   K     F   I +C+ L
Sbjct: 458 NKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHL 517

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
           G LE G+ +H +L+  G         AL  MY++CG ++ A+ VF+ M     VSW+ MI
Sbjct: 518 GYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMI 577

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
           A  G HG     I L+ QML  GI P+ ITF+ +LSAC+HAG V+EG+ YF +M   +G+
Sbjct: 578 AGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSM-SEFGV 636

Query: 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611
            P  DH+A  +DLL RAG  + A  +I SLPF  ++ IW ALL GCRIH  ID+     +
Sbjct: 637 EPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEK 696

Query: 612 QLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFL 671
            L  +     G Y LLSN+YA  G WD   +VR +M+ +G++K PG S IE+D K++ F 
Sbjct: 697 NLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFG 756

Query: 672 VDDTAHPEAQAVYKYLEQL--VLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVA 729
             DT+H + + +Y++LE    ++  +     PD   V        KE  + +HSEKLA+A
Sbjct: 757 PGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIV--GTSKFNKENNVVSHSEKLAIA 814

Query: 730 FGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
           FG++    G T+R+ KNLR+C DCH+  K  SK+ GREI++RD  RFH FR+G CSC DY
Sbjct: 815 FGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDY 874

Query: 790 W 790
           W
Sbjct: 875 W 875



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 159/351 (45%), Gaps = 63/351 (17%)

Query: 200 SSPFVSSRSLMG---AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
           S+  + S + +G   +++RVFD  P+ D   W  ++  YV   + + A      M     
Sbjct: 36  STKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEM----- 90

Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
                     V+++      + Q+  F + SV+ AC+  G   +G +VH  ++    K  
Sbjct: 91  ----------VYQD------QTQISNFVFPSVLKACSGFGDLSVGGKVHGRVI----KCG 130

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFE 376
            E    V  +L+ +Y +   +++A   F+ MP RD+V+W++I+  +V             
Sbjct: 131 FESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFV------------- 177

Query: 377 AMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
                             QNG   EGL +FSQM  E  +P          +C+ LG+L  
Sbjct: 178 ------------------QNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRL 219

Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ 496
           GR +H  +V    +S+ S  N+LI MY + G + +A  +F  +P   +  W  MI+   Q
Sbjct: 220 GRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQ 279

Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
            G    A+ ++ +M +  + P+++T + VL AC   G VKEGR    ++HG
Sbjct: 280 SGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGR----SVHG 326



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 165/376 (43%), Gaps = 48/376 (12%)

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           Y  +   CA S       Q+HA+L  T     P    P +  L+  Y + G    ++ +F
Sbjct: 4   YMPLFRRCATSTTL---TQLHAHLFITGLHRHP----PASTKLIESYAQIGIFESSKRVF 56

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           +  P+ D   W  ++  YV  G  +EA SL+  M  ++                      
Sbjct: 57  DTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQD---------------------- 94

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
              Q ++  F      F   + +C+G G L  G ++H +++  G++S      +L+ MY 
Sbjct: 95  ---QTQISNF-----VFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYG 146

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
               ++ A   F+TMP  D V+W++++    Q+G  +  ++++ QM+ E + PD +T L+
Sbjct: 147 EMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLS 206

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE---AKDVIDSL 581
           V  AC+  G ++ GR    ++HG       E + +    L+   GK  +   A+ + +++
Sbjct: 207 VTEACSELGSLRLGR----SVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENV 262

Query: 582 PFKPSAPIWEALLAGCRIHGNID--LGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639
           P + +AP W  +++     G     L + A  Q F++ P+   T V +    A LGR  +
Sbjct: 263 PCRMTAP-WTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQV-TMVGVLCACARLGRVKE 320

Query: 640 AARVRKLMRDRGVKKE 655
              V   +  R +  E
Sbjct: 321 GRSVHGFVIRRAMDPE 336



 Score = 44.7 bits (104), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 4/127 (3%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           VH  +I  G +   ++   L D+Y K  +L  A  +FD + +  IV+ + +IA Y     
Sbjct: 526 VHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQ 585

Query: 97  VKLAREMFNK---TPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
           +     +FN+   + +K  D  F + +++A SH          F  M    V+P +  F 
Sbjct: 586 INATISLFNQMLGSGIKPNDITFMH-ILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFA 644

Query: 154 SVLSALA 160
            ++  L+
Sbjct: 645 CMVDLLS 651


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/570 (37%), Positives = 336/570 (58%), Gaps = 17/570 (2%)

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEF------- 283
           +   Y  +  LD +   L    +   + + + I  +  R L +  L +  D         
Sbjct: 62  LQRAYAASGRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPT 121

Query: 284 --TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEAR 341
             T ++ + AC       LG+ +HAY  +            V  AL+++Y + G    AR
Sbjct: 122 AHTLSASLPACRG---LSLGRALHAYAFKLALSGDSY----VATALLSMYARAGDAAAAR 174

Query: 342 DIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEE 401
            +F++MP+  +VS  A+L+ Y + G +D+A+ LF+ +  ++ + W  MI G  Q+G   E
Sbjct: 175 ALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNE 234

Query: 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALI 460
            L+LF +M     +P +      +++ A LG +E+G+ LH+ + +S     ++    AL+
Sbjct: 235 ALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALV 294

Query: 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI 520
            MY +CG +E A  VF+ + N D V WNAMI     HG+  +A+E++ Q+  +G+ P  I
Sbjct: 295 DMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDI 354

Query: 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580
           TF+ +L+AC+H+GLV+EGR +F++M   YGI P  +HY   +DLL RAG   EA  ++ S
Sbjct: 355 TFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQS 414

Query: 581 LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA 640
           L   P A +W +LLA CR+H N+ LG + A+ L      ++G Y+LLSN+YA +G+W++ 
Sbjct: 415 LTITPDAVMWVSLLAACRLHKNMALGQRIADFLVANGLANSGMYILLSNIYAAVGKWEEV 474

Query: 641 ARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYV 700
           ARVR +M+  G++KEPGCS IE+D KV+ F+  D +HP    +Y  L+++   +++ G+V
Sbjct: 475 ARVRSMMKASGIQKEPGCSAIEIDRKVYEFVAGDMSHPCTDEIYAMLDKMNALVKEHGHV 534

Query: 701 PDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFM 760
           P T+ VLHD++   KE AL+ HSEKLAVAFGL+    G+T++++KNLR C DCH   K +
Sbjct: 535 PQTELVLHDLDEATKEKALAVHSEKLAVAFGLISSRPGSTIKIVKNLRACSDCHAVLKLI 594

Query: 761 SKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           SK+  R+IV RD  RFHHF DG C+CGDYW
Sbjct: 595 SKITSRKIVFRDRNRFHHFVDGSCTCGDYW 624



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 128/514 (24%), Positives = 208/514 (40%), Gaps = 96/514 (18%)

Query: 13  ANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTL 72
           A+R AS L  C      T+  A  +HA ++  G      +  RL   Y  S +L ++ TL
Sbjct: 24  ADRAASLLAACS-----TARRASELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTL 78

Query: 73  FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
                 P                                  T+FY + I A+S       
Sbjct: 79  LGRTKDPT---------------------------------TIFYTSAIHAHSSRGLHLP 105

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
            + L  DM  + + P   T ++ L A   +         +H    K      + V  AL+
Sbjct: 106 GLALLSDMLSEGLLPTAHTLSASLPACRGL----SLGRALHAYAFKLALSGDSYVATALL 161

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
           S+Y         +      AAR +FDEMP+   +S T M+T Y     LD AR   DG+ 
Sbjct: 162 SMY---------ARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLP 212

Query: 253 ENVGVAWNALISGYVHR-------ELKMLMLR--IQLDEFTYTSVISACANSGLFRLGKQ 303
               + WNA+I GY          +L   MLR   + DE T   V+SA A  G    GK 
Sbjct: 213 RKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKW 272

Query: 304 VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV 363
           +H+Y+  +      + ++ V  ALV +Y KCG + +A  +F+ +  +D+V WNA+++ Y 
Sbjct: 273 LHSYVKNSRC---VQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGY- 328

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
                                         A +G   + L++F Q+R +G  P D  F G
Sbjct: 329 ------------------------------AMHGDSRKALEMFVQLRDQGLWPTDITFIG 358

Query: 424 AITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-N 481
            + +C+  G +E GR     + H  G D  +     ++ +  R G++E A  +  ++   
Sbjct: 359 LLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTIT 418

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI 515
            D+V W +++AA   H N A    + + ++  G+
Sbjct: 419 PDAVMWVSLLAACRLHKNMALGQRIADFLVANGL 452


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/592 (37%), Positives = 335/592 (56%), Gaps = 50/592 (8%)

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL-----ISGYVH 268
           R + D   ++D    T ++  Y     +D AR+  D   +     WNAL     ++G+  
Sbjct: 101 RHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGE 160

Query: 269 REL----KMLMLRIQLDEFTYTSVISACANSGL----FRLGKQVHAYLLRTEAKPTPEFS 320
             L    KM  + ++ D FTYT V+ AC  S         GK++HA+L R          
Sbjct: 161 EVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGY------- 213

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
               N+ V +                           ++  Y   G +D A  +F  M  
Sbjct: 214 ----NSHVYIM------------------------TTLVDMYARFGCVDYASYVFNGMPV 245

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE--GFKPCDYAFAGAITSCAGLGALENGR 438
           RN++SW+ MI+  A+NG   E L+ F +M  E     P        + +CA L ALE GR
Sbjct: 246 RNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGR 305

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
            +H  ++  G DS L   +AL+TMY RCG ++    VF+ M + D VSWN++I++ G HG
Sbjct: 306 LIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHG 365

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
            G +AI+++E+ML  G  P  +TF++VL AC+H GLV+EG+R FE+M   +GI P  +HY
Sbjct: 366 YGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHY 425

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
           A  +DLL RA +  EA  ++  +  +P   +W +LL  CRIHGN++L  +A+ +LF L P
Sbjct: 426 ACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEP 485

Query: 619 HHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHP 678
            +AG YVLL+++YA    WD+  RV+KL+  RG++K PG  W+EV  K++ F+  D  +P
Sbjct: 486 KNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSMDEFNP 545

Query: 679 EAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGG 738
             + ++ +L +L  +M++ GY+P TK VL+++E+++KE  +  HSEKLA+AFGL+    G
Sbjct: 546 LMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKG 605

Query: 739 ATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             +R+ KNLR+C DCH   KF+SK + +EI+VRD  RFH F++G CSCGDYW
Sbjct: 606 EPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 112/448 (25%), Positives = 193/448 (43%), Gaps = 81/448 (18%)

Query: 70  RTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSN 129
           R + D     D    T LI  YS   +V  AR++F+KT  + R    +NA+  A +   +
Sbjct: 101 RHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKT--RKRTIYVWNALFRALTLAGH 158

Query: 130 GHAAIELFRDMRRDDVKPDNFTFTSVLSALA---LIVEEEKQCMQMHCTVVKSGTGLFTS 186
           G   + L+  M R  V+ D FT+T VL A        +   +  ++H  + + G      
Sbjct: 159 GEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVY 218

Query: 187 VLNALISVYVK--CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKN-DYLDA 243
           ++  L+ +Y +  CV             A  VF+ MP R+ +SW+ M+  Y KN    +A
Sbjct: 219 IMTTLVDMYARFGCVD-----------YASYVFNGMPVRNVVSWSAMIACYAKNGKAFEA 267

Query: 244 AREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ 303
            R F + M+E    + N++                     T  SV+ ACA+      G+ 
Sbjct: 268 LRTFREMMTETKDSSPNSV---------------------TMVSVLQACASLAALEQGRL 306

Query: 304 VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV 363
           +H Y+LR          LPV +ALVT+Y +CGK++  + +F++M +RD+VSWN+++S+Y 
Sbjct: 307 IHGYILRRGLDSI----LPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSY- 361

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
                                           +GYG + +++F +M   G  P    F  
Sbjct: 362 ------------------------------GVHGYGRKAIQIFEEMLANGASPTPVTFVS 391

Query: 424 AITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVV-EAANCVFNTMPN 481
            + +C+  G +E G++L   +    G    +     ++ +  R   + EAA  V +    
Sbjct: 392 VLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTE 451

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQ 509
                W +++ +   HGN    +EL E+
Sbjct: 452 PGPKVWGSLLGSCRIHGN----VELAER 475



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 8/210 (3%)

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG 448
           +I  L + G  ++ L++ SQ       P    +   I  C    +L +G ++H  ++ +G
Sbjct: 52  LIQSLCKEGKLKQALRVLSQES----SPSQQTYELLILCCGHRSSLSDGLRVHRHILDNG 107

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
            D        LI MY+  G V+ A  VF+         WNA+  AL   G+G   + LY 
Sbjct: 108 SDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYW 167

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY---ARFIDLL 565
           +M + G+  DR T+  VL AC  +    +     + +H          H       +D+ 
Sbjct: 168 KMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMY 227

Query: 566 CRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
            R G    A  V + +P + +   W A++A
Sbjct: 228 ARFGCVDYASYVFNGMPVR-NVVSWSAMIA 256


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/483 (40%), Positives = 296/483 (61%)

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367
           L R      P   + + N ++  Y   G+V EAR +F+ M  RDLVSWN ++  Y   G 
Sbjct: 103 LARAAFDEAPRRDVFLCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGD 162

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
           +  A+ +F+  R+R+  SW+ MIS  A+    +E L+L+ +MR+ G  P   +    +++
Sbjct: 163 VGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSA 222

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
           C+ +GAL  G ++H  +  +  +  +  G AL+ MYA+CG +E +  VF+ MP  D ++W
Sbjct: 223 CSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTW 282

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
           ++MI  L  HG G  A+ L+ +M+ +G+ P+ ITF+ VL AC H GLV +G++YF +M  
Sbjct: 283 SSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSD 342

Query: 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
            +G+ P  +HY   +DLL RAG   EA ++I S+ FKP   IW  LL  CRIH N+++  
Sbjct: 343 VHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAE 402

Query: 608 QAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKV 667
           +A  +L  L P   G YVLLSN+YA    W+  A +RK +R   +++ PG S IE +N V
Sbjct: 403 EAMAKLKVLDPLADGHYVLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRSSIEWENTV 462

Query: 668 HVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLA 727
           H F+  D +HP  + +YK LE+++  +R+ GY P T  VL D++   K+ AL+ HSEKLA
Sbjct: 463 HEFVSGDRSHPRIEEIYKMLEEMMDRLRQAGYRPMTSLVLQDIDEQSKKRALAEHSEKLA 522

Query: 728 VAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCG 787
           +AFGL+  P  +T+R+ KNLR C DCH+A K +S    R+++VRD  RFHHF +G+CSC 
Sbjct: 523 IAFGLLVTPARSTLRITKNLRACEDCHSAIKLISLAYDRKLIVRDRNRFHHFSEGQCSCK 582

Query: 788 DYW 790
           DYW
Sbjct: 583 DYW 585



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 156/387 (40%), Gaps = 95/387 (24%)

Query: 171 QMHCTVVKSG---TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS 227
            +H   ++SG     LF  V  AL+ +Y K  +         +  AR  FDE P RD   
Sbjct: 68  SLHARALRSGFAAADLF--VRTALVEMYAKTAAGE-------IALARAAFDEAPRRDVFL 118

Query: 228 WTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR------------------ 269
              M+  YV    +  AR+  DGMS    V+WN +I GY  R                  
Sbjct: 119 CNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDA 178

Query: 270 --------------------EL--KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY 307
                               EL  +M +  +  D  +  SV+SAC+  G   +G +VH +
Sbjct: 179 FSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRF 238

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367
           +         E  + +  ALV +Y KCG +  +  +F+ MP +D+++W++++    + GL
Sbjct: 239 VESNRV----EVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGL 294

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
                                          G + L LFS+M  +G +P +  F G + +
Sbjct: 295 -------------------------------GHDALSLFSEMISQGLQPNEITFIGVLIA 323

Query: 428 CAGLGALENGRQLHAQL--VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDS 484
           C  +G + +G++  + +  VH G    +     ++ +  R G VE A  +  +M    D 
Sbjct: 324 CTHVGLVNDGKKYFSSMSDVH-GVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDP 382

Query: 485 VSWNAMIAALGQHGNGARAIELYEQML 511
           + W  ++ A   H N    +E+ E+ +
Sbjct: 383 IIWRTLLGACRIHKN----VEIAEEAM 405



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 148/328 (45%), Gaps = 62/328 (18%)

Query: 48  PREHII--NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFN 105
           PR  +   N ++  Y    ++  AR +FD +   D+V+  T+I  Y+   +V +ARE+F+
Sbjct: 112 PRRDVFLCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFD 171

Query: 106 KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL----AL 161
            T  + RD   +++MI+AY+       A+EL+R+MR   V PD  +  SVLSA     AL
Sbjct: 172 GT--RDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGAL 229

Query: 162 IVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMP 221
            +  E     +H  V  +   +   +  AL+ +Y KC           +  + +VF  MP
Sbjct: 230 AIGAE-----VHRFVESNRVEVDMKLGTALVDMYAKCGD---------IENSLKVFHAMP 275

Query: 222 ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLD 281
            +D L+W++M+ G                   N G+  +AL S +     +M+   +Q +
Sbjct: 276 VKDVLTWSSMIIGLA-----------------NHGLGHDAL-SLFS----EMISQGLQPN 313

Query: 282 EFTYTSVISACANSGLFRLGKQ-------VHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
           E T+  V+ AC + GL   GK+       VH  + R E              +V L  + 
Sbjct: 314 EITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEH----------YGCMVDLLGRA 363

Query: 335 GKVNEARDIFNQMPER-DLVSWNAILSA 361
           G V EA ++   M  + D + W  +L A
Sbjct: 364 GHVEEAMELIRSMTFKPDPIIWRTLLGA 391


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/636 (35%), Positives = 356/636 (55%), Gaps = 46/636 (7%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           Q+H   +K+G      + + L +  V  +     SSR +   AR VF +MPE +   W T
Sbjct: 37  QLHAIFIKTG-----QIQDPLTAAEV--IKFCAFSSRDI-DYARAVFRQMPEPNCFCWNT 88

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           ++    + +      E L   SE + +    L  G           R++ + FT+ SV+ 
Sbjct: 89  ILRILAETN-----DEHLQ--SEALMLFSAMLCDG-----------RVKPNRFTFPSVLK 130

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF------ 344
           ACA +   R GKQ+H  +++       EF   V + LV +Y  C  + +A  +F      
Sbjct: 131 ACARASRLREGKQIHGLIVKFGFHED-EF---VISNLVRMYVMCAVMEDAYSLFCKNVVD 186

Query: 345 ----------NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
                      +  + ++V WN ++   V  G I  AK+LF+ M  R+++SW VMISG A
Sbjct: 187 FDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYA 246

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
           QNG+  E + LF +M+     P        + + A +GALE G+ +H     +  +    
Sbjct: 247 QNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDV 306

Query: 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
            G+AL+ MY++CG ++ A  VF T+P  ++++W+A+I A   HG    AI  +  M K G
Sbjct: 307 LGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAG 366

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
           + P+ + ++ +LSAC+HAGLV+EGR +F  M    G+ P  +HY   +DLL RAG   EA
Sbjct: 367 VTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEA 426

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL 634
           +++I ++P +P   IW+ALL  C++H N+ +G + AE L +L PH +G+YV LSN+YA+L
Sbjct: 427 EELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASL 486

Query: 635 GRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEM 694
           G W+  ARVR  M+   ++K+PGCSWIE+   +H FLV+D +H +A+ +   L ++ +++
Sbjct: 487 GNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKL 546

Query: 695 RKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCH 754
           R  GY P+T  V  + +  ++  AL  HSEK+AVAFGL+       ++++KNLRIC DCH
Sbjct: 547 RSNGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCH 606

Query: 755 NAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            + K +S +  R+I+VRD KRFH F  G CSC DYW
Sbjct: 607 ASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 124/471 (26%), Positives = 203/471 (43%), Gaps = 70/471 (14%)

Query: 62  KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMI 121
           K L  ++ +T   +I  P   A      A+S+ D +  AR +F + P    +   +N ++
Sbjct: 36  KQLHAIFIKT--GQIQDPLTAAEVIKFCAFSSRD-IDYARAVFRQMPEP--NCFCWNTIL 90

Query: 122 TAYSHNSNGH---AAIELFRDMRRDD-VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVV 177
              +  ++ H    A+ LF  M  D  VKP+ FTF SVL A A      ++  Q+H  +V
Sbjct: 91  RILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACAR-ASRLREGKQIHGLIV 149

Query: 178 KSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFD-----EMPERDE----LSW 228
           K G      V++ L+ +YV C  +    + SL       FD     E+ +R +    + W
Sbjct: 150 KFGFHEDEFVISNLVRMYVMC--AVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLW 207

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY---------VHRELKMLMLRIQ 279
             M+ G V+   + +A+   D M     V+WN +ISGY         ++   +M    I 
Sbjct: 208 NIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNID 267

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            +  T  SV+ A A  G   LGK +H Y      K   E    + +ALV +Y KCG +++
Sbjct: 268 PNYVTLVSVLPAIARIGALELGKWIHLY----AGKNKVEIDDVLGSALVDMYSKCGSIDK 323

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
           A  +F  +P+R+ ++W+AI+ A+                               A +G  
Sbjct: 324 ALQVFETLPKRNAITWSAIIGAF-------------------------------AMHGRA 352

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH-SGYDSSLSAGNA 458
           E+ +  F  M   G  P D A+ G +++C+  G +E GR   + +V   G    +     
Sbjct: 353 EDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGC 412

Query: 459 LITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN---GARAIE 505
           ++ +  R G +E A  +   MP   D V W A++ A   H N   G R  E
Sbjct: 413 MVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAE 463



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 157/346 (45%), Gaps = 56/346 (16%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF---------------DEIPQ 78
            + +H  ++  GF   E +I+ L+ +Y     +  A +LF               D+  Q
Sbjct: 141 GKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQ 200

Query: 79  P-DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
             ++V    +I       ++K A+ +F++ P   R  V +N MI+ Y+ N +   AI LF
Sbjct: 201 DGNVVLWNIMIDGQVRLGDIKSAKNLFDEMP--PRSVVSWNVMISGYAQNGHFIEAINLF 258

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
           ++M+  ++ P+  T  SVL A+A I   E     +H    K+   +   + +AL+ +Y K
Sbjct: 259 QEMQSSNIDPNYVTLVSVLPAIARIGALELG-KWIHLYAGKNKVEIDDVLGSALVDMYSK 317

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C S         +  A +VF+ +P+R+ ++W+ ++  +  +                 G 
Sbjct: 318 CGS---------IDKALQVFETLPKRNAITWSAIIGAFAMH-----------------GR 351

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPT 316
           A +A+I  ++     M    +  ++  Y  ++SAC+++GL   G+   +++++    +P 
Sbjct: 352 AEDAIIHFHL-----MGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPR 406

Query: 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
            E        +V L  + G + EA ++   MP E D V W A+L A
Sbjct: 407 IEHY----GCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGA 448


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 245/732 (33%), Positives = 384/732 (52%), Gaps = 71/732 (9%)

Query: 60  YCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNA 119
           Y K  K ++A  L       ++     LIA Y+    +  A  +  +  +   D V +N+
Sbjct: 299 YAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQ--MNNADVVTWNS 356

Query: 120 MITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKS 179
           +I  Y  N     A+E F DM     K D  + TS+++A   +       M++H  V+K 
Sbjct: 357 LIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRL-SNLLAGMELHAYVIKH 415

Query: 180 GTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND 239
           G      V N LI +Y KC  + +      MG   R F  M ++D +SWTT++ GY +ND
Sbjct: 416 GWDSNLQVGNTLIDMYSKCNLTCY------MG---RAFLRMHDKDLISWTTVIAGYAQND 466

Query: 240 YLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFR 299
               A E    +++                       R+++DE    S++ A +      
Sbjct: 467 CHVEALELFRDVAKK----------------------RMEIDEMILGSILRASSVLKSML 504

Query: 300 LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAIL 359
           + K++H ++LR     T      + N LV +Y KC  +  A  +F               
Sbjct: 505 IVKEIHCHILRKGLLDTV-----IQNELVDVYGKCRNMGYATRVF--------------- 544

Query: 360 SAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY 419
                           E+++ ++++SWT MIS  A NG   E ++LF +M   G      
Sbjct: 545 ----------------ESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSV 588

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
           A    +++ A L AL  GR++H  L+  G+    S   A++ MYA CG +++A  VF+ +
Sbjct: 589 ALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRI 648

Query: 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
                + + +MI A G HG G  A+EL+++M  E + PD I+FL +L AC+HAGL+ EGR
Sbjct: 649 ERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGR 708

Query: 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI 599
            + + M   Y + P  +HY   +D+L RA    EA + +  +  +P+A +W ALLA CR 
Sbjct: 709 GFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRS 768

Query: 600 HGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCS 659
           H   ++G  AA++L +L P + G  VL+SN++A  GRW+D  +VR  M+  G++K PGCS
Sbjct: 769 HSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCS 828

Query: 660 WIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEM-RKLGYVPDTKFVLHDMESDQKEYA 718
           WIE+D KVH F   D +HPE++ +Y+ L ++  ++ R++GYV DTKFVLH+++  +K   
Sbjct: 829 WIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYVADTKFVLHNVDEGEKVQM 888

Query: 719 LSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHH 778
           L  HSE++A+A+GL++ P  A +R+ KNLR+C DCH   K +SK+  R+IV+RD  RFHH
Sbjct: 889 LHGHSERIAIAYGLLRTPDRACLRITKNLRVCRDCHTFCKLVSKLFRRDIVMRDANRFHH 948

Query: 779 FRDGKCSCGDYW 790
           F  G CSCGD W
Sbjct: 949 FESGLCSCGDSW 960



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 132/516 (25%), Positives = 221/516 (42%), Gaps = 105/516 (20%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPRE--HIINRLIDIYCKSLKLVYARTLF 73
           +A  L+LC  R  +  S  R +H+ +  + F   E   +  +L+ +Y K   L  A  +F
Sbjct: 83  FAYVLELCGKRRAV--SQGRQLHSRIFKT-FPSFELDFLAGKLVFMYGKCGSLDDAEKVF 139

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
           DE+P                                  R    +N MI AY  N    +A
Sbjct: 140 DEMPD---------------------------------RTAFAWNTMIGAYVSNGEPASA 166

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
           + L+ +MR + V     +F ++L A A +  + +   ++H  +VK G      ++NAL+S
Sbjct: 167 LALYWNMRVEGVPLGLSSFPALLKACAKL-RDIRSGSELHSLLVKLGYHSTGFIVNALVS 225

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPER-DELSWTTMMTGYVKNDYLDAAREFLDGMS 252
           +Y K            + AARR+FD   E+ D + W ++++ Y                 
Sbjct: 226 MYAK---------NDDLSAARRLFDGFQEKGDAVLWNSILSSY----------------- 259

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
                +  +L +  + RE  M M     + +T  S ++AC      +LGK++HA +L++ 
Sbjct: 260 ---STSGKSLETLELFRE--MHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKS- 313

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
              T    L V NAL+ +Y +CGK+ +A  I  QM   D+V+WN+++  YV         
Sbjct: 314 --STHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYV--------- 362

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
                                 QN   +E L+ FS M   G K  + +    I +   L 
Sbjct: 363 ----------------------QNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLS 400

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
            L  G +LHA ++  G+DS+L  GN LI MY++C +       F  M + D +SW  +IA
Sbjct: 401 NLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIA 460

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
              Q+     A+EL+  + K+ +  D +   ++L A
Sbjct: 461 GYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRA 496



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 178/397 (44%), Gaps = 79/397 (19%)

Query: 141 RRDDVKPDNFTFTSVLSALALIVE------EEKQCMQMHCTVVKSGTGLFTSVL-NALIS 193
           +R DV  +N    S + A A ++E         Q  Q+H  + K+        L   L+ 
Sbjct: 69  QRLDVSENN----SPVEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVF 124

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
           +Y KC S         +  A +VFDEMP+R   +W TM+  YV N    +A         
Sbjct: 125 MYGKCGS---------LDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASA--------- 166

Query: 254 NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
            + + WN  + G            + L   ++ +++ ACA     R G ++H+ L++   
Sbjct: 167 -LALYWNMRVEG------------VPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGY 213

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSAYVSAGLIDEAK 372
             T      + NALV++Y K   ++ AR +F+   E+ D V WN+ILS+Y ++G     K
Sbjct: 214 HSTG----FIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSG-----K 264

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
           SL                          E L+LF +M + G  P  Y    A+T+C G  
Sbjct: 265 SL--------------------------ETLELFREMHMTGPAPNSYTIVSALTACDGFS 298

Query: 433 ALENGRQLHAQLVHSG-YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
             + G+++HA ++ S  + S L   NALI MY RCG +  A  +   M N D V+WN++I
Sbjct: 299 YAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLI 358

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
               Q+     A+E +  M+  G   D ++  ++++A
Sbjct: 359 KGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAA 395



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 145/325 (44%), Gaps = 52/325 (16%)

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP-VNNALVTLYWKCGKVN 338
           ++ F Y  V+  C        G+Q+H+ + +T     P F L  +   LV +Y KCG ++
Sbjct: 80  VEAFAY--VLELCGKRRAVSQGRQLHSRIFKT----FPSFELDFLAGKLVFMYGKCGSLD 133

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGY 398
           +A  +F++MP+R   +WN ++ AYVS                               NG 
Sbjct: 134 DAEKVFDEMPDRTAFAWNTMIGAYVS-------------------------------NGE 162

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
               L L+  MR+EG      +F   + +CA L  + +G +LH+ LV  GY S+    NA
Sbjct: 163 PASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNA 222

Query: 459 LITMYARCGVVEAANCVFNTMPNV-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
           L++MYA+   + AA  +F+      D+V WN+++++    G     +EL+ +M   G  P
Sbjct: 223 LVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAP 282

Query: 518 DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR------FIDLLCRAGKF 571
           +  T ++ L+AC+     K G+     +H    +     H +        I +  R GK 
Sbjct: 283 NSYTIVSALTACDGFSYAKLGKE----IHA--SVLKSSTHSSELYVCNALIAMYTRCGKM 336

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAG 596
            +A+ ++  +        W +L+ G
Sbjct: 337 PQAERILRQMN-NADVVTWNSLIKG 360


>gi|357521583|ref|XP_003631080.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525102|gb|AET05556.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 253/748 (33%), Positives = 388/748 (51%), Gaps = 83/748 (11%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
           N L+ +Y ++ +L  AR LF+     ++++   L+  Y     +  AR +F+  P+  R+
Sbjct: 145 NGLLAVYVQNGRLEEARRLFESKVDWELISWNCLMGGYVKRKMLGDARRLFDHMPV--RN 202

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALAL--IVEEEKQCMQ 171
            + +N MI+ Y+ + +   A  LF +    DV    FT+T+++ A     +++E ++   
Sbjct: 203 AISWNTMISGYARDGDLLQARRLFEESPVRDV----FTWTAMVFAYVQSGMLDEARR--- 255

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
               V     G      N +I+ YV+            M  AR +F+ MP R+  SW T+
Sbjct: 256 ----VFDEMPGKREMAYNVMIAGYVQ---------YKKMDMARELFEAMPCRNVGSWNTI 302

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY---------VHRELKMLMLRIQLDE 282
           ++GY +N  +  ARE  D M++   V+W A+I+GY         +H  +KM      L+ 
Sbjct: 303 ISGYGQNGDIAQARELFDMMTQRDCVSWAAIIAGYAQTGHYEKVMHMLVKMKRDGKSLNR 362

Query: 283 FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARD 342
            T+   +S CA      LGKQVH   ++T      +    V NAL+ +Y KC        
Sbjct: 363 STFCCALSTCAGMAALVLGKQVHGQAVKTGY----DNGCLVGNALLEMYCKC-------- 410

Query: 343 IFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG 402
                                  G I EA  +FE M+ ++++SW  M++G A++G+G + 
Sbjct: 411 -----------------------GSIGEAYDVFERMQLKDIISWNTMLAGYARHGFGRQA 447

Query: 403 LKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITM 462
           L +F  M+  GFKP +            + +    R++    V +   + L  GN  +T 
Sbjct: 448 LLVFDSMKTAGFKPDEITML--------IWSNNRLRKVGNTWVPTSLMNPL--GNTWVTS 497

Query: 463 YARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF 522
            +     E        +  + SV    ++  +  +     A  L+       +    I  
Sbjct: 498 TSVTEKQEE-----RRVNRIGSVCITFLLVIISAYKYRLHACHLFPCNWLLSLYLTCIHN 552

Query: 523 LTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582
           + VL AC+H GL   G  YF +M   YGI P   HY   IDLL RAG   EA +++ ++P
Sbjct: 553 VGVLLACSHTGLTDRGTEYFYSMSKDYGITPNSKHYNCMIDLLGRAGLLEEAHNLMRNMP 612

Query: 583 FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAAR 642
           F+P A  W ALL   RIHGN +LG +AAE +F + P++AG YVLLSN+YA LG+W D  +
Sbjct: 613 FEPDAATWGALLGASRIHGNAELGEKAAEMVFNMEPNNAGMYVLLSNLYATLGKWVDVGK 672

Query: 643 VRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPD 702
           +R  MR  G++K PG SW+EV NK+H F V D  HPE   +Y YLE++ L+M+  G+V  
Sbjct: 673 LRLKMRQLGIQKIPGYSWVEVQNKIHKFTVGDCFHPEKDRIYAYLEEIDLKMKHEGHVSL 732

Query: 703 TKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSK 762
            K VLHD+E ++K+  L  HSEKLAVAFG++ +P G  +RV+KNLR+C DCHN  K++SK
Sbjct: 733 VKLVLHDVEEEEKKRMLKYHSEKLAVAFGILTIPAGRPIRVMKNLRVCEDCHNVIKYISK 792

Query: 763 VVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +VGR I++RD  RFH+  +G CSCGDYW
Sbjct: 793 IVGRLIILRDSHRFHYVSEGICSCGDYW 820



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 135/461 (29%), Positives = 220/461 (47%), Gaps = 66/461 (14%)

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           A  +FD +P  ++ +   ++  Y  +  +  AR +F+  P K  D V +N M++ Y  + 
Sbjct: 67  ALRVFDSMPYKNLFSWNLMLTGYVKNRRLVDARNLFDLMPQK--DAVSWNVMLSGYVRSG 124

Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL 188
               A  +F          DN  +   +S                               
Sbjct: 125 CVDEAKLVF----------DNMPYKDSIS------------------------------W 144

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           N L++VYV+            +  ARR+F+   + + +SW  +M GYVK   L  AR   
Sbjct: 145 NGLLAVYVQ---------NGRLEEARRLFESKVDWELISWNCLMGGYVKRKMLGDARRLF 195

Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDE------FTYTSVISACANSGLFRLGK 302
           D M     ++WN +ISGY  R+  +L  R   +E      FT+T+++ A   SG+    +
Sbjct: 196 DHMPVRNAISWNTMISGYA-RDGDLLQARRLFEESPVRDVFTWTAMVFAYVQSGMLDEAR 254

Query: 303 QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY 362
           +V            P       N ++  Y +  K++ AR++F  MP R++ SWN I+S Y
Sbjct: 255 RVF--------DEMPGKREMAYNVMIAGYVQYKKMDMARELFEAMPCRNVGSWNTIISGY 306

Query: 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422
              G I +A+ LF+ M +R+ +SW  +I+G AQ G+ E+ + +  +M+ +G       F 
Sbjct: 307 GQNGDIAQARELFDMMTQRDCVSWAAIIAGYAQTGHYEKVMHMLVKMKRDGKSLNRSTFC 366

Query: 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482
            A+++CAG+ AL  G+Q+H Q V +GYD+    GNAL+ MY +CG +  A  VF  M   
Sbjct: 367 CALSTCAGMAALVLGKQVHGQAVKTGYDNGCLVGNALLEMYCKCGSIGEAYDVFERMQLK 426

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
           D +SWN M+A   +HG G +A+ +++ M   G  PD IT L
Sbjct: 427 DIISWNTMLAGYARHGFGRQALLVFDSMKTAGFKPDEITML 467



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 148/617 (23%), Positives = 252/617 (40%), Gaps = 156/617 (25%)

Query: 27  NPITSSLARSVHAHMISSGFK--PREHII--NRLIDIYCKSLKLVYARTLFDEIPQPDIV 82
           N I++ + R+ H H+    F   P +++   N ++  Y K+ +LV AR LFD +PQ D V
Sbjct: 53  NSISTHM-RNGHCHLALRVFDSMPYKNLFSWNLMLTGYVKNRRLVDARNLFDLMPQKDAV 111

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFR---- 138
           +   +++ Y  S  V  A+ +F+  P K  D++ +N ++  Y  N     A  LF     
Sbjct: 112 SWNVMLSGYVRSGCVDEAKLVFDNMPYK--DSISWNGLLAVYVQNGRLEEARRLFESKVD 169

Query: 139 --------------------DMRR--DDVKPDN-FTFTSVLSALALIVEEEKQCMQMHCT 175
                               D RR  D +   N  ++ +++S  A     +   +Q    
Sbjct: 170 WELISWNCLMGGYVKRKMLGDARRLFDHMPVRNAISWNTMISGYA----RDGDLLQARRL 225

Query: 176 VVKSGT-GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTG 234
             +S    +FT    A++  YV+           ++  ARRVFDEMP + E+++  M+ G
Sbjct: 226 FEESPVRDVFT--WTAMVFAYVQ---------SGMLDEARRVFDEMPGKREMAYNVMIAG 274

Query: 235 YVKNDYLDAAREFLDGM-SENVGVAWNALISGY--------------------------- 266
           YV+   +D ARE  + M   NVG +WN +ISGY                           
Sbjct: 275 YVQYKKMDMARELFEAMPCRNVG-SWNTIISGYGQNGDIAQARELFDMMTQRDCVSWAAI 333

Query: 267 -------------VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
                        +H  +KM      L+  T+   +S CA      LGKQVH   ++T  
Sbjct: 334 IAGYAQTGHYEKVMHMLVKMKRDGKSLNRSTFCCALSTCAGMAALVLGKQVHGQAVKTGY 393

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
               +    V NAL+ +Y KCG + EA D+F +M  +D++SWN +L+ Y   G   +A  
Sbjct: 394 ----DNGCLVGNALLEMYCKCGSIGEAYDVFERMQLKDIISWNTMLAGYARHGFGRQALL 449

Query: 374 LFEAMR-------ERNLLSW--------------TVMISGLAQNGYGEEGLKLFSQMR-- 410
           +F++M+       E  +L W              T +++ L         +    + R  
Sbjct: 450 VFDSMKTAGFKPDEITMLIWSNNRLRKVGNTWVPTSLMNPLGNTWVTSTSVTEKQEERRV 509

Query: 411 --------------LEGFK---------PCDYAFA---------GAITSCAGLGALENGR 438
                         +  +K         PC++  +         G + +C+  G  + G 
Sbjct: 510 NRIGSVCITFLLVIISAYKYRLHACHLFPCNWLLSLYLTCIHNVGVLLACSHTGLTDRGT 569

Query: 439 Q-LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQ 496
           +  ++     G   +    N +I +  R G++E A+ +   MP   D+ +W A++ A   
Sbjct: 570 EYFYSMSKDYGITPNSKHYNCMIDLLGRAGLLEEAHNLMRNMPFEPDAATWGALLGASRI 629

Query: 497 HGN---GARAIELYEQM 510
           HGN   G +A E+   M
Sbjct: 630 HGNAELGEKAAEMVFNM 646


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/627 (36%), Positives = 340/627 (54%), Gaps = 68/627 (10%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSW-T 229
           Q+H   VK+G GL      A ++  +   +     + + +  AR+VFD +P   ++ W  
Sbjct: 46  QLHAVAVKAGGGL--QAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVVWYN 103

Query: 230 TMMTGYVKNDYL-----DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFT 284
           T++ GY +  +      +AAR F+  M E V                         D +T
Sbjct: 104 TLLRGYARGGWGGGCAEEAARVFVRMMEEGVAP-----------------------DTYT 140

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           + S++ ACA++     G+Q H   ++  A    E+  P    L+ +Y +CG V  AR   
Sbjct: 141 FVSLLKACASARAGEEGRQAHGVAVKAGAAEH-EYVAPT---LINMYAECGDVRAAR--- 193

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
                                        +F+ M    ++S+  MI+   ++    E L 
Sbjct: 194 ----------------------------VMFDRMDGECVVSYNAMITASVRSSLPGEALV 225

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           LF +M+ +G KP        +++CA LGALE GR +H  +     DS +    ALI MYA
Sbjct: 226 LFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYA 285

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           +CG +E A  VF  M + D  +W+ M+ A   HG G  AI ++E+M K+G+ PD +TFL 
Sbjct: 286 KCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLG 345

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584
           VL AC+H+G+V EG +YF++M   YGI  G  HY    DLL R+G+   A   ID LP K
Sbjct: 346 VLYACSHSGMVSEGLQYFDSMR-EYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIK 404

Query: 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVR 644
           P+A +W  LL+ C  HG++D+G +  E++ +L   H G YV+ SN+ AN GRW++   VR
Sbjct: 405 PTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVR 464

Query: 645 KLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTK 704
           KLM ++GV K PGCS IE+DN VH F   D +HP +Q   + +++++ +++ +GYVP+T 
Sbjct: 465 KLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTS 524

Query: 705 FVLH-DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKV 763
            V H +M  ++K  +L  HSEKLA++FGL+    G T+R++KNLR+C DCH+  K +S V
Sbjct: 525 HVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMV 584

Query: 764 VGREIVVRDGKRFHHFRDGKCSCGDYW 790
             R I++RD  RFHHF DG CSCGDYW
Sbjct: 585 FNRRIILRDLNRFHHFEDGVCSCGDYW 611



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 106/425 (24%), Positives = 181/425 (42%), Gaps = 73/425 (17%)

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSN----GHAAIELFRDMRRDDVKPD 148
           A  ++  AR++F++ P    D V+YN ++  Y+           A  +F  M  + V PD
Sbjct: 79  APAHLAYARQVFDRIP-HPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPD 137

Query: 149 NFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
            +TF S+L A A     E +  Q H   VK+G      V   LI++Y +C          
Sbjct: 138 TYTFVSLLKACASARAGE-EGRQAHGVAVKAGAAEHEYVAPTLINMYAECGD-------- 188

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH 268
            + AAR +FD M     +S+  M+T  V++                  +   AL+   + 
Sbjct: 189 -VRAARVMFDRMDGECVVSYNAMITASVRSS-----------------LPGEALV---LF 227

Query: 269 RELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALV 328
           RE++   L+      T  SV+SACA  G   LG+ +H Y+ +          + VN AL+
Sbjct: 228 REMQAKGLKPT--SVTLISVLSACALLGALELGRWIHDYIRKMRLDSL----VKVNTALI 281

Query: 329 TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV 388
            +Y KCG + +A  +F  M  RD  +W+ ++ AY + G   EA S+FE M+++ +     
Sbjct: 282 DMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGM----- 336

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG 448
                                     KP D  F G + +C+  G +  G Q    +   G
Sbjct: 337 --------------------------KPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYG 370

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELY 507
             S +     +  + AR G +E A    + +P    ++ W  +++A   HG+      ++
Sbjct: 371 IVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVF 430

Query: 508 EQMLK 512
           E++L+
Sbjct: 431 ERILE 435



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 130/300 (43%), Gaps = 47/300 (15%)

Query: 86  TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
           TLI  Y+   +V+ AR MF++  +     V YNAMITA   +S    A+ LFR+M+   +
Sbjct: 178 TLINMYAECGDVRAARVMFDR--MDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGL 235

Query: 146 KPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVS 205
           KP + T  SVLSA AL+   E     +H  + K        V  ALI +Y KC S     
Sbjct: 236 KPTSVTLISVLSACALLGALELG-RWIHDYIRKMRLDSLVKVNTALIDMYAKCGS----- 289

Query: 206 SRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265
               +  A  VF +M  RD+ +W+ MM  Y  + Y   A    + M +            
Sbjct: 290 ----LEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQ----------- 334

Query: 266 YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ----VHAYLLRTEAKPTPEFSL 321
                       ++ D+ T+  V+ AC++SG+   G Q    +  Y + +  K       
Sbjct: 335 -----------GMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHY----- 378

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPERDL-VSWNAILSAYVSAGLIDEAKSLFEAMRE 380
                +  L  + G++  A    +++P +   + W  +LSA    G +D  K +FE + E
Sbjct: 379 ---GCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILE 435


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 248/710 (34%), Positives = 372/710 (52%), Gaps = 92/710 (12%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
            TL+  Y+ +     A  +F + P K  D + +N+++ ++ ++     A+ L   M    
Sbjct: 283 NTLLRMYAGAGRSVEANLVFKQMPTK--DLISWNSLMASFVNDGRSLDALGLLCSMISSG 340

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
              +  TFTS L+A       EK  + +H  VV SG      + NAL+S+Y K       
Sbjct: 341 KSVNYVTFTSALAACFTPDFFEKGRI-LHGLVVVSGLFYNQIIGNALVSMYGKI------ 393

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
                M  +RRV  +MP RD                                VAWNALI 
Sbjct: 394 ---GEMSESRRVLLQMPRRDV-------------------------------VAWNALIG 419

Query: 265 GYVHRE---------LKMLMLRIQLDEFTYTSVISACANSG-LFRLGKQVHAYLLRTEAK 314
           GY   E           M +  +  +  T  SV+SAC   G L   GK +HAY++    +
Sbjct: 420 GYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFE 479

Query: 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374
                   V N+L+T+Y KCG ++ ++D+FN +  R++++WNA+L+A             
Sbjct: 480 SDEH----VKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAAN------------ 523

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
                              A +G+GEE LKL S+MR  G     ++F+  +++ A L  L
Sbjct: 524 -------------------AHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVL 564

Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV--SWNAMIA 492
           E G+QLH   V  G++      NA   MY++CG  E    V    P+V+    SWN +I+
Sbjct: 565 EEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCG--EIGEVVKMLPPSVNRSLPSWNILIS 622

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552
           ALG+HG        + +ML+ GI P  +TF+++L+AC+H GLV +G  Y++ +   +G+ 
Sbjct: 623 ALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLE 682

Query: 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
           P  +H    IDLL R+G+ +EA+  I  +P KP+  +W +LLA C+IHGN+D G +AAE 
Sbjct: 683 PAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAEN 742

Query: 613 LFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLV 672
           L +L P     YVL SNM+A  GRW+D   VRK M  + +KK+  CSW+++ +KV  F +
Sbjct: 743 LSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGI 802

Query: 673 DDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGL 732
            D  HP+   +Y  LE +   +++ GYV DT   L D + +QKE+ L  HSE+LA+A+ L
Sbjct: 803 GDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYAL 862

Query: 733 MKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDG 782
           M  P G+TVR+ KNLRIC DCH+ +KF+S+V+GR IV+RD  RFHHF  G
Sbjct: 863 MSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERG 912



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 156/654 (23%), Positives = 278/654 (42%), Gaps = 150/654 (22%)

Query: 41  MISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ-----------PDIVARTTLIA 89
           M   G KP   +I  L+    +S       ++F E  Q            D+   T ++ 
Sbjct: 32  MCDLGIKPSSFVIASLVTACGRS------GSMFREGVQVHGFVAKSGLLSDVYVSTAILH 85

Query: 90  AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
            Y     V  +R++F + P   R+ V + +++  YS        I++++ MR + V  + 
Sbjct: 86  LYGVYGLVSCSRKVFEEMP--DRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNE 143

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
            + + V+S+  L+ ++E    Q+   VVKSG     +V N+LIS+         + S   
Sbjct: 144 NSMSLVISSCGLL-KDESLGRQIIGQVVKSGLESKLAVENSLISM---------LGSMGN 193

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
           +  A  +FD+M ERD +SW ++   Y +N +++ +                         
Sbjct: 194 VDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFS-------------------- 233

Query: 270 ELKMLMLRI--QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327
               LM R   +++  T ++++S   +    + G+ +H  +++          + V N L
Sbjct: 234 ----LMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSV----VCVCNTL 285

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG-----------LIDEAKSL-- 374
           + +Y   G+  EA  +F QMP +DL+SWN++++++V+ G           +I   KS+  
Sbjct: 286 LRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNY 345

Query: 375 ---------------FEAMRERNLLSWTVMISGLAQN----------------------- 396
                          FE  R   +L   V++SGL  N                       
Sbjct: 346 VTFTSALAACFTPDFFEKGR---ILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRV 402

Query: 397 -----------------GYGEE-----GLKLFSQMRLEGFKPCDYAFAGAITSCAGLG-A 433
                            GY E+      L  F  MR+EG           +++C   G  
Sbjct: 403 LLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDL 462

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
           LE G+ LHA +V +G++S     N+LITMYA+CG + ++  +FN + N + ++WNAM+AA
Sbjct: 463 LERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAA 522

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
              HG+G   ++L  +M   G+  D+ +F   LSA     +++EG++    +HG   +  
Sbjct: 523 NAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQ----LHG-LAVKL 577

Query: 554 GEDH----YARFIDLLCRAGKFSEAKDVIDSLP--FKPSAPIWEALLAGCRIHG 601
           G +H    +    D+  + G+  E   V+  LP     S P W  L++    HG
Sbjct: 578 GFEHDSFIFNAAADMYSKCGEIGE---VVKMLPPSVNRSLPSWNILISALGRHG 628



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 126/495 (25%), Positives = 212/495 (42%), Gaps = 82/495 (16%)

Query: 109 LKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQ 168
           + +R+ V +N M++           +E FR M    +KP +F   S+++A        ++
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFRE 60

Query: 169 CMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSW 228
            +Q+H  V KSG          L  VYV            L+  +R+VF+EMP+R+ +SW
Sbjct: 61  GVQVHGFVAKSGL---------LSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSW 111

Query: 229 TTMMTGYVKNDYLDAAREFLDGM-SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTS 287
           T++M GY      +   +   GM  E VG   N++                       + 
Sbjct: 112 TSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSM-----------------------SL 148

Query: 288 VISACANSGLFR---LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           VIS+C   GL +   LG+Q+   ++    K   E  L V N+L+++    G V       
Sbjct: 149 VISSC---GLLKDESLGRQIIGQVV----KSGLESKLAVENSLISMLGSMGNV------- 194

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
                                   D A  +F+ M ER+ +SW  + +  AQNG+ EE  +
Sbjct: 195 ------------------------DYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFR 230

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           +FS MR    +      +  ++    +   + GR +H  +V  G+DS +   N L+ MYA
Sbjct: 231 IFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYA 290

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
             G    AN VF  MP  D +SWN+++A+    G    A+ L   M+  G   + +TF +
Sbjct: 291 GAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTS 350

Query: 525 VLSACNHAGLVKEGRRYFETMHGPY---GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581
            L+AC      ++GR     +HG     G+   +      + +  + G+ SE++ V+  +
Sbjct: 351 ALAACFTPDFFEKGR----ILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQM 406

Query: 582 PFKPSAPIWEALLAG 596
           P +     W AL+ G
Sbjct: 407 P-RRDVVAWNALIGG 420



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 150/351 (42%), Gaps = 75/351 (21%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +HA+++S+GF+  EH+ N LI +Y K   L  ++ LF+ +                 
Sbjct: 466 GKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGL----------------- 508

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
            DN               R+ + +NAM+ A +H+ +G   ++L   MR   V  D F+F+
Sbjct: 509 -DN---------------RNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFS 552

Query: 154 SVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
             LSA A L V EE Q  Q+H   VK G    + + NA   +Y KC           +G 
Sbjct: 553 EGLSAAAKLAVLEEGQ--QLHGLAVKLGFEHDSFIFNAAADMYSKC---------GEIGE 601

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
             ++      R   SW  +++   ++ Y +                    +    H   +
Sbjct: 602 VVKMLPPSVNRSLPSWNILISALGRHGYFEE-------------------VCATFH---E 639

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVTLY 331
           ML + I+    T+ S+++AC++ GL   G   +  + R    +P  E  + V    + L 
Sbjct: 640 MLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICV----IDLL 695

Query: 332 WKCGKVNEARDIFNQMPER--DLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
            + G++ EA    ++MP +  DLV W ++L++    G +D  +   E + +
Sbjct: 696 GRSGRLAEAETFISKMPMKPNDLV-WRSLLASCKIHGNLDRGRKAAENLSK 745


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 241/665 (36%), Positives = 355/665 (53%), Gaps = 81/665 (12%)

Query: 133 AIELFRDMRRDDVKPDNFTFTSVL---SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLN 189
           A+ L+  M R   +P+ FTF   L   +AL+L +       Q H  + K G      V  
Sbjct: 33  ALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGS----QFHGQITKVGCVFEPFVQT 88

Query: 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS--WTTMMTGYVKNDYLDAAREF 247
            LIS+Y K          SL+  AR+VF+E     +L+  +  +++GYV N     A   
Sbjct: 89  GLISMYCK---------GSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLL 139

Query: 248 LDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY 307
              M+E  GV  N++                     T   +I AC +     LG  +H  
Sbjct: 140 FRQMNEE-GVPVNSV---------------------TLLGLIPACVSPINLELGSSLHCS 177

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367
            L    K   +  + V N  +T+Y KCG                                
Sbjct: 178 TL----KYGFDSDVSVVNCFITMYMKCGS------------------------------- 202

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
           ++ A+ LF+ M  + L+SW  M+SG AQNG     L+L+  M + G  P      G ++S
Sbjct: 203 VNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSS 262

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
           CA LGA   G ++  ++  SG+ S+    NALI MYARCG +  A  VF+ MP    VSW
Sbjct: 263 CANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSW 322

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
            A+I   G HG+G  A++L+++M++ GI PD   F+ VLSAC+HAGL  +G  YF+ M  
Sbjct: 323 TAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKR 382

Query: 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
            Y + PG +HY+  +DLL RAG+  EA+ +I+S+P KP   +W ALL  C+IH N++L  
Sbjct: 383 NYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAE 442

Query: 608 QAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKV 667
            A E++ +L P + G YVLLSN+Y+N        R+R +M+++ +KK+PGCS++E+  +V
Sbjct: 443 LAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRV 502

Query: 668 HVFLVDDTAHPEAQAVYKYLEQL-VLEMRKLGYVPDTKFVLHDMESDQKEYA-LSTHSEK 725
           H F+V D  H ++  +Y+ LE+L  + M++ G  P+     +  ES++  +  +  HSEK
Sbjct: 503 HPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGK-PEKD---NREESNKDGFTRVGVHSEK 558

Query: 726 LAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCS 785
           LAVAFGL+    GA V ++KNLRIC DCH  FK +SK+V R++ VRD  RFHHFR+G CS
Sbjct: 559 LAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDATRFHHFRNGSCS 618

Query: 786 CGDYW 790
           C DYW
Sbjct: 619 CKDYW 623



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 138/538 (25%), Positives = 240/538 (44%), Gaps = 88/538 (16%)

Query: 3   MKN---ADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDI 59
           MKN   +  +  L+  + +QL+    R     +L  S++  M+  G +P        +  
Sbjct: 1   MKNHCKSKSMNALSTPWNTQLRELAKRCQFLQAL--SLYPQMLRHGDRPNAFTFPFALK- 57

Query: 60  YCKSLKL-VYARTLFDEIPQPDIV----ARTTLIAAYSASDNVKLAREMFNKTPLKMRDT 114
            C +L L +       +I +   V     +T LI+ Y     V  AR++F +     + T
Sbjct: 58  SCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLT 117

Query: 115 VFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHC 174
           V YNA+++ Y  NS    A+ LFR M  + V  ++ T   ++ A    +  E     +HC
Sbjct: 118 VCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGS-SLHC 176

Query: 175 TVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTG 234
           + +K G     SV+N  I++Y+KC S  +         A+++FDEMP +  +SW  M++G
Sbjct: 177 STLKYGFDSDVSVVNCFITMYMKCGSVNY---------AQKLFDEMPVKGLISWNAMVSG 227

Query: 235 YVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACAN 294
           Y +N                 G+A N L    ++R   M M  +  D  T   V+S+CAN
Sbjct: 228 YAQN-----------------GLATNVL---ELYR--NMDMNGVHPDPVTLVGVLSSCAN 265

Query: 295 SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS 354
            G   +G +V   +  +     P     +NNAL+ +Y +CG + +A+ +F+ MPER LVS
Sbjct: 266 LGAQSVGHEVEFKIQASGFTSNPF----LNNALINMYARCGNLTKAQAVFDGMPERTLVS 321

Query: 355 WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF 414
           W AI                               I G   +G+GE  ++LF +M   G 
Sbjct: 322 WTAI-------------------------------IGGYGMHGHGEIAVQLFKEMIRSGI 350

Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG----NALITMYARCGVVE 470
           +P   AF   +++C+  G  + G + + +++   Y   L  G    + ++ +  R G ++
Sbjct: 351 EPDGTAFVCVLSACSHAGLTDQGLE-YFKMMKRNYQ--LEPGPEHYSCMVDLLGRAGRLK 407

Query: 471 AANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
            A  +  +MP   D   W A++ A   H N   A   +E++++  + P+ I +  +LS
Sbjct: 408 EAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIE--LEPENIGYYVLLS 463



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 6/214 (2%)

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
           W   +  LA+     + L L+ QM   G +P  + F  A+ SCA L     G Q H Q+ 
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVF--NTMPNVDSVSWNAMIAALGQHGNGARA 503
             G          LI+MY +  +V+ A  VF  N      +V +NA+++    +   + A
Sbjct: 77  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEA 136

Query: 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR-YFETMHGPYGIPPGEDHYARFI 562
           + L+ QM +EG+  + +T L ++ AC     ++ G   +  T+   YG          FI
Sbjct: 137 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLK--YGFDSDVSVVNCFI 194

Query: 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
            +  + G  + A+ + D +P K     W A+++G
Sbjct: 195 TMYMKCGSVNYAQKLFDEMPVKGLIS-WNAMVSG 227


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/592 (37%), Positives = 335/592 (56%), Gaps = 50/592 (8%)

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL-----ISGYVH 268
           R + D   ++D    T ++  Y     +D AR+  D   +     WNAL     ++G+  
Sbjct: 101 RHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGE 160

Query: 269 REL----KMLMLRIQLDEFTYTSVISACANSGL----FRLGKQVHAYLLRTEAKPTPEFS 320
             L    KM  + ++ D FTYT V+ AC  S         GK++HA+L R          
Sbjct: 161 EVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSS----H 216

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           + +   LV +Y +                                G +D A  +F  M  
Sbjct: 217 VYIMTTLVDMYAR-------------------------------FGCVDYASYVFGGMPV 245

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE--GFKPCDYAFAGAITSCAGLGALENGR 438
           RN++SW+ MI+  A+NG   E L+ F +M  E     P        + +CA L ALE G+
Sbjct: 246 RNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGK 305

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
            +H  ++  G DS L   +AL+TMY RCG +E    VF+ M + D VSWN++I++ G HG
Sbjct: 306 LIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHG 365

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
            G +AI+++E+ML  G  P  +TF++VL AC+H GLV+EG+R FETM   +GI P  +HY
Sbjct: 366 YGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHY 425

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
           A  +DLL RA +  EA  ++  +  +P   +W +LL  CRIHGN++L  +A+ +LF L P
Sbjct: 426 ACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEP 485

Query: 619 HHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHP 678
            +AG YVLL+++YA    WD+  RV+KL+  RG++K PG  W+EV  K++ F+  D  +P
Sbjct: 486 KNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNP 545

Query: 679 EAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGG 738
             + ++ +L +L  +M++ GY+P TK VL+++E+++KE  +  HSEKLA+AFGL+    G
Sbjct: 546 LMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKG 605

Query: 739 ATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             +R+ KNLR+C DCH   KF+SK + +EI+VRD  RFH F++G CSCGDYW
Sbjct: 606 EPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score =  142 bits (358), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 114/448 (25%), Positives = 191/448 (42%), Gaps = 81/448 (18%)

Query: 70  RTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSN 129
           R + D     D    T LI  YS   +V  AR++F+KT  + R    +NA+  A +   +
Sbjct: 101 RHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKT--RKRTIYVWNALFRALTLAGH 158

Query: 130 GHAAIELFRDMRRDDVKPDNFTFTSVLSALA---LIVEEEKQCMQMHCTVVKSGTGLFTS 186
           G   + L+  M R  V+ D FT+T VL A       V    +  ++H  + + G      
Sbjct: 159 GEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVY 218

Query: 187 VLNALISVYVK--CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKN-DYLDA 243
           ++  L+ +Y +  CV             A  VF  MP R+ +SW+ M+  Y KN    +A
Sbjct: 219 IMTTLVDMYARFGCVD-----------YASYVFGGMPVRNVVSWSAMIACYAKNGKAFEA 267

Query: 244 AREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ 303
            R F + M E    + N++                     T  SV+ ACA+      GK 
Sbjct: 268 LRTFREMMRETKDSSPNSV---------------------TMVSVLQACASLAALEQGKL 306

Query: 304 VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV 363
           +H Y+LR          LPV +ALVT+Y +CGK+   + +F++M +RD+VSWN+++S+Y 
Sbjct: 307 IHGYILRRGLDSI----LPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSY- 361

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
                                           +GYG++ +++F +M   G  P    F  
Sbjct: 362 ------------------------------GVHGYGKKAIQIFEEMLANGASPTPVTFVS 391

Query: 424 AITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVV-EAANCVFNTMPN 481
            + +C+  G +E G++L   +    G    +     ++ +  R   + EAA  V +    
Sbjct: 392 VLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTE 451

Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQ 509
                W +++ +   HGN    +EL E+
Sbjct: 452 PGPKVWGSLLGSCRIHGN----VELAER 475



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 138/332 (41%), Gaps = 73/332 (21%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + +HAH+   G+    +I+  L+D+Y +   + YA  +F  +P  ++V+ + +IA Y+ 
Sbjct: 201 GKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAK 260

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD--DVKPDNFT 151
                                            N     A+  FR+M R+  D  P++ T
Sbjct: 261 ---------------------------------NGKAFEALRTFREMMRETKDSSPNSVT 287

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
             SVL A A +   E Q   +H  +++ G      V++AL+++Y +C           + 
Sbjct: 288 MVSVLQACASLAALE-QGKLIHGYILRRGLDSILPVISALVTMYGRC---------GKLE 337

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
             +RVFD M +RD +SW ++++ Y  + Y   A +  + M  N G +   +         
Sbjct: 338 VGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLAN-GASPTPV--------- 387

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVTL 330
                       T+ SV+ AC++ GL   GK++   + R    KP  E        +V L
Sbjct: 388 ------------TFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHY----ACMVDL 431

Query: 331 YWKCGKVNEARDIFNQM-PERDLVSWNAILSA 361
             +  +++EA  +   M  E     W ++L +
Sbjct: 432 LGRANRLDEAAKMVQDMRTEPGPKVWGSLLGS 463



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 4/141 (2%)

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG 448
           +I  L + G  ++ +++ SQ       P    +   I  C    +L +  ++H  ++ +G
Sbjct: 52  LIQSLCKEGKLKQAIRVLSQES----SPSQQTYELLILCCGHRSSLSDALRVHRHILDNG 107

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
            D        LI MY+  G V+ A  VF+         WNA+  AL   G+G   + LY 
Sbjct: 108 SDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYW 167

Query: 509 QMLKEGILPDRITFLTVLSAC 529
           +M + G+  DR T+  VL AC
Sbjct: 168 KMNRIGVESDRFTYTYVLKAC 188


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/588 (38%), Positives = 335/588 (56%), Gaps = 26/588 (4%)

Query: 222 ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL---------K 272
           ++D+     +   Y  +  LD A   L    +   V + + I  +  R L         +
Sbjct: 53  DQDKAVAFRLQRAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHRAALALLSE 112

Query: 273 MLMLRIQL--DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
           ML+ R  L     T ++ + AC   G   +G+ +H Y ++      P     V  AL+ +
Sbjct: 113 MLLSRHGLLPTAHTLSASLPAC---GCLAVGRALHGYAVKLALSGEPY----VATALLGM 165

Query: 331 YWKCGKVNEARDIFNQM-PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           Y + G+   AR +F+ M P+  +VS  A+LS Y   G +D+A+ LF+A+  ++L+ W  M
Sbjct: 166 YARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAM 225

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           + G  Q+G   E L+LF QM   G +P + +   A+++ A LG  E+GR LH+ + + G 
Sbjct: 226 MDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGR 285

Query: 450 DSSLS----AGNALITMYARCGVVEAANCVFNTMP---NVDSVSWNAMIAALGQHGNGAR 502
            + +      G AL+ MY +CG +E A  VF  +    + D V+WNAMI     HG    
Sbjct: 286 RARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSRE 345

Query: 503 AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562
           A+E + Q+  +G+ P  ITF+ VL+AC+H+GLV EGR  F  M   YGI P  +HY   +
Sbjct: 346 ALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMV 405

Query: 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622
           DLL RAG+  EA D++ S+  KP A +W +LL  CR+H N+ LG + A+ L      ++G
Sbjct: 406 DLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVGNGLANSG 465

Query: 623 TYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQA 682
           TYVLLSNMYA  G+W +  RVR +MR  GV+KEPGCS +EV  +V  F+  D +HP +  
Sbjct: 466 TYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCSAVEVGRRVVEFVAGDRSHPRSAE 525

Query: 683 VYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVR 742
           +Y  LE++    R  G+VP T+ VLHD++   KE AL+ HSEKLA+AFGL+  P    ++
Sbjct: 526 IYAKLEEVNSIARARGHVPHTELVLHDLDDAAKERALAVHSEKLALAFGLISTPPRTGIK 585

Query: 743 VLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           ++KNLR C DCH   K +S+  GR+IV RD  RFHHF DG CSCGDYW
Sbjct: 586 IVKNLRACADCHAVLKLVSEATGRKIVFRDRNRFHHFVDGSCSCGDYW 633



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 149/341 (43%), Gaps = 50/341 (14%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEI-PQPDIVARTTLIAA 90
           ++ R++H + +        ++   L+ +Y ++ +   AR LFD + P P +V+ T +++ 
Sbjct: 138 AVGRALHGYAVKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSC 197

Query: 91  YSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF 150
           Y+    +  AR +F+  P K  D V +NAM+  Y+ +     A+ LFR M R  V+PD  
Sbjct: 198 YAKMGQLDDARGLFDALPRK--DLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEV 255

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSG----TGLFTSVLNALISVYVKCVS--SPFV 204
           +    LSA+A +   E     +H  V   G      L   V  AL+ +Y KC S      
Sbjct: 256 SVVLALSAVAQLGTAESG-RWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVA 314

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
             R L G          +RD ++W  M+ GY  +     +RE L+   +           
Sbjct: 315 VFRDLGGGG--------DRDVVAWNAMINGYAMHGR---SREALEAFGQ----------- 352

Query: 265 GYVHRELKMLMLRIQ---LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSL 321
                      LR Q     + T+  V++AC++SGL   G+ + A  +  E    P+  +
Sbjct: 353 -----------LRAQGLWPTDITFIGVLNACSHSGLVDEGRALFA-AMEEEYGIVPK--V 398

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
                +V L  + G+V EA D+   M  + D   W ++L A
Sbjct: 399 EHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGA 439


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 248/740 (33%), Positives = 378/740 (51%), Gaps = 103/740 (13%)

Query: 37  VHAHMISSGFKPREH--IINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           VHA  +  GF       + N L+  YC+  +L  A  LF+EI                  
Sbjct: 163 VHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILD---------------- 206

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
                            +D+V +N +IT Y  +     AI LF  MR+   KP +FTF+ 
Sbjct: 207 -----------------KDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSG 249

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
           VL A+ + + +     Q+H   V +G     SV N ++  Y K         R L    R
Sbjct: 250 VLKAV-VGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSK-------HDRVL--ETR 299

Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
            +F+EMPE D +S+  +++ Y + +  + +      M             G+  R     
Sbjct: 300 NLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQ----------CMGFDRR----- 344

Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
                   F + +++S  AN    ++G+QVH   +   A       L V N+LV +Y KC
Sbjct: 345 -------NFPFATMLSIAANLSSLQVGRQVHCQAIVATADSI----LHVGNSLVDMYAKC 393

Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
              +EA  IF  + +R  VSW A++S YV  GL                           
Sbjct: 394 EMFDEAELIFKSLSQRSTVSWTALISGYVQKGL--------------------------- 426

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
              +G  GLKLF++MR    +     FA  + + AG  +L  G+QLHA ++ SG   ++ 
Sbjct: 427 ---HG-AGLKLFTKMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVF 482

Query: 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
           +G+ L+ MYA+CG ++ A  VF  MP+ ++VSWNA+I+A   +G+G  AI  + +M++ G
Sbjct: 483 SGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSG 542

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
           + PD ++ L VL AC+H G V++G  +F+ M   YGI P + HYA  +DLL R G+F+EA
Sbjct: 543 LQPDSVSILGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEA 602

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP-HHAGTYVLLSNMYAN 633
           + ++D +PF+P   +W ++L  CRI+ N  L  +AAEQLF +     A  YV +SN+YA 
Sbjct: 603 EKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAA 662

Query: 634 LGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLE 693
            G+W++   V+K MR+RG+KK P  SW+EV++K+HVF  +D  HP    + K + +L  E
Sbjct: 663 AGKWENVRHVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVKKINELTTE 722

Query: 694 MRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDC 753
           + + GY PDT  V+ D++   K  +L  HSE+LAVAF L+  P G  + V+KNLR C DC
Sbjct: 723 IEREGYKPDTSSVVQDIDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDC 782

Query: 754 HNAFKFMSKVVGREIVVRDG 773
           H A K +SK+V R I  + G
Sbjct: 783 HAAIKLISKIVKRVITTQPG 802



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 157/596 (26%), Positives = 270/596 (45%), Gaps = 99/596 (16%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           R V A +I +GF       N  ++   +  ++  A  ++DE+P  + V+  T+I+ Y   
Sbjct: 29  RRVDARIIKTGFNTDTCRSNFTVEDLLRRGQVSAALKVYDEMPHKNTVSTNTMISGYVKM 88

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
            ++  AR +F+  P   R  V +  ++  Y+ N++   A +LFR M R    PD  TFT+
Sbjct: 89  GDLSSARHLFDAMP--DRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTT 146

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSG--TGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
           +L      V +     Q+H   VK G  T LF +V N L+  Y +            +  
Sbjct: 147 LLPGCNDAVPQNA-VGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEV---------RRLDL 196

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A  +F+E+ ++D +++ T++TGY K                      + L +  +H  LK
Sbjct: 197 ACVLFEEILDKDSVTFNTLITGYEK----------------------DGLYTEAIHLFLK 234

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS--LPVNNALVTL 330
           M     +  +FT++ V+ A      F LG+Q+H   +      T  FS    V N ++  
Sbjct: 235 MRQSGHKPSDFTFSGVLKAVVGLHDFALGQQLHGLSV------TTGFSRDASVGNQILHF 288

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y K  +V E R++FN+MPE D VS+N ++S+Y                            
Sbjct: 289 YSKHDRVLETRNLFNEMPELDFVSYNVVISSY---------------------------- 320

Query: 391 SGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD 450
              +Q    EE L LF +M+  GF   ++ FA  ++  A L +L+ GRQ+H Q + +  D
Sbjct: 321 ---SQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATAD 377

Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
           S L  GN+L+ MYA+C + + A  +F ++    +VSW A+I+   Q G     ++L+ +M
Sbjct: 378 SILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKM 437

Query: 511 LKEGILPDRITFLTVLSACN-----------HAGLVKEGRRYFETMHGPYGIPPGEDHYA 559
               +  D+ TF TVL A             HA +++ G    E +    G+        
Sbjct: 438 RGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGN--LENVFSGSGL-------- 487

Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
             +D+  + G   +A  V + +P + +A  W AL++    +G+ +  I A  ++ Q
Sbjct: 488 --VDMYAKCGSIKDAVQVFEEMPDR-NAVSWNALISAYADNGDGEAAIGAFTKMIQ 540



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 113/498 (22%), Positives = 206/498 (41%), Gaps = 133/498 (26%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           +L + +H   +++GF     + N+++  Y K  +++  R LF+E+P+ D V+   +I++Y
Sbjct: 261 ALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSY 320

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
           S ++  +                                  ++ LFR+M+       NF 
Sbjct: 321 SQAEQYE---------------------------------ESLNLFREMQCMGFDRRNFP 347

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           F ++LS +A  +   +   Q+HC  + +       V N+L+ +Y KC          +  
Sbjct: 348 FATMLS-IAANLSSLQVGRQVHCQAIVATADSILHVGNSLVDMYAKC---------EMFD 397

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A  +F  + +R  +SWT +++GYV+     A  +                         
Sbjct: 398 EAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFT---------------------- 435

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
           KM    ++ D+ T+ +V+ A A      LGKQ+HA+++R+       FS    + LV +Y
Sbjct: 436 KMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRS-GNLENVFS---GSGLVDMY 491

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            KCG + +A  +F +MP+R+ VSWNA++SAY                             
Sbjct: 492 AKCGSIKDAVQVFEEMPDRNAVSWNALISAY----------------------------- 522

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
             A NG GE  +  F++M   G +P   +  G + +C+  G +E G +            
Sbjct: 523 --ADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACSHCGFVEQGTEF----------- 569

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
                             +A + ++   P      +  M+  LG++G  A A +L ++M 
Sbjct: 570 -----------------FQAMSPIYGITPK--KKHYACMLDLLGRNGRFAEAEKLMDEMP 610

Query: 512 KEGILPDRITFLTVLSAC 529
            E   PD I + +VL+AC
Sbjct: 611 FE---PDEIMWSSVLNAC 625



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 162/398 (40%), Gaps = 93/398 (23%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           + R VH   I +      H+ N L+D+Y K      A  +F  + Q              
Sbjct: 363 VGRQVHCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQ-------------- 408

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                              R TV + A+I+ Y       A ++LF  MR  +++ D  TF
Sbjct: 409 -------------------RSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLRADQSTF 449

Query: 153 TSVLSALA----LIVEEEKQCMQMHCTVVKSGT--GLFTSVLNALISVYVKCVSSPFVSS 206
            +VL A A    L++ +     Q+H  +++SG    +F+   + L+ +Y KC S      
Sbjct: 450 ATVLKASAGFASLLLGK-----QLHAFIIRSGNLENVFSG--SGLVDMYAKCGS------ 496

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              +  A +VF+EMP+R+ +SW  +++ Y  N          DG          A I  +
Sbjct: 497 ---IKDAVQVFEEMPDRNAVSWNALISAYADNG---------DG---------EAAIGAF 535

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN- 325
                KM+   +Q D  +   V+ AC++ G    G +    +       +P + +     
Sbjct: 536 T----KMIQSGLQPDSVSILGVLIACSHCGFVEQGTEFFQAM-------SPIYGITPKKK 584

Query: 326 ---ALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA---YVSAGLIDE-AKSLFEA 377
               ++ L  + G+  EA  + ++MP E D + W+++L+A   Y +  L +  A+ LF  
Sbjct: 585 HYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSM 644

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
            + R+  ++  M +  A  G  E    +   MR  G K
Sbjct: 645 EKLRDAAAYVSMSNIYAAAGKWENVRHVKKAMRERGIK 682


>gi|357132372|ref|XP_003567804.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 851

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/736 (31%), Positives = 371/736 (50%), Gaps = 73/736 (9%)

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQ 171
           +D V +N  +   +       AI  FR+M+   V  D +    VL A        ++   
Sbjct: 132 KDAVLWNKQVAMLAEAGEWDEAIGAFREMQARGVAADGYALARVLHACGR-AAARREGKA 190

Query: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           +H   +K+G      ++   ++         +     +  A   +    P    ++W  +
Sbjct: 191 VHAHALKAGLVDAHPLVPGFLA-------GMYAEGADVAAATAVLLRATPPPRSVAWDAV 243

Query: 232 MTGYVKNDYLDAAREFLDGMS----ENVGVAWNALISGYVH----REL-----KMLMLRI 278
           +   V+   +D A E    M+    E     WNA++SG       RE      +ML   +
Sbjct: 244 VACCVRLGLVDDAMELAGRMARDGPEPTLATWNAVLSGCARHGRDREALAVLRRMLEQGL 303

Query: 279 QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
             D  T +S++ + AN+G+ R G +VH + LR    P          ALV +Y KCG+++
Sbjct: 304 WPDATTVSSLLKSVANAGMVRHGMEVHCFFLRHGLVPDAY----TGTALVDMYAKCGRLD 359

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER----------------- 381
            AR +F+ +  R+L +WN++++ +  AG  + A  L E M+                   
Sbjct: 360 CARRVFDTLEHRNLATWNSLVAGHAYAGQFEAALELVERMKRNRLDPNVTTWNGLITGYS 419

Query: 382 ----------------------NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY 419
                                 N++SWT +ISG   NG  E+    F +M+ +G +P   
Sbjct: 420 LNGLSSQAMLLLRQIKAAGLTPNVVSWTSLISGSCHNGEYEDSFNFFKEMQKDGVQPSLV 479

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
                + +CAGL  L+ G++LH   +   YD  +  G ALI MY++ G + +A  +F  +
Sbjct: 480 TMLVLLRACAGLALLKKGKELHCFALRRAYDCDMVVGTALIDMYSKAGSLTSAKRIFGRI 539

Query: 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539
            N + V  NAM+  L  HG    AI L+  + + G+ PD ITF  +L+AC   GL+ EG 
Sbjct: 540 QNKNLVCCNAMLTGLAVHGQSHEAITLFHDLWRSGLKPDSITFTALLTACRSMGLITEGW 599

Query: 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI 599
            YF+ M   YG+ P  ++YA  +DLL R+G   EA  +I+  P  P A +W ALL GC I
Sbjct: 600 EYFDNMETKYGVVPTAENYACMVDLLARSGYLDEAMALIERSPVDPGASLWGALLTGCSI 659

Query: 600 HGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCS 659
           HGN+DL   AA  LF+L P+++  Y+++ ++Y +   +D+A  ++  M+ RGV   PG S
Sbjct: 660 HGNLDLAEVAARNLFRLEPYNSANYLMIMSLYEHEQMYDEADSLKYAMKARGVNTRPGWS 719

Query: 660 WIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYAL 719
           WI+++  +HVF VD + HPE   + + L  LV +++  GYVPDT  V++++  ++KE  L
Sbjct: 720 WIQIEQGIHVFEVDGSPHPETAEICEELMSLVRQIKMTGYVPDTSCVVYNVPEEEKEKLL 779

Query: 720 STHSEKLAVAFGLM-----KLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGK 774
             H+EKLA+ +GL+     ++P    VRV+KN R+C DCH   K +S + GR+I++RD  
Sbjct: 780 LCHTEKLAITYGLIHSDASRMP----VRVIKNTRMCSDCHEVAKHISALCGRQIILRDAV 835

Query: 775 RFHHFRDGKCSCGDYW 790
           RFHHF DG CSC DYW
Sbjct: 836 RFHHFVDGNCSCNDYW 851



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 121/522 (23%), Positives = 207/522 (39%), Gaps = 105/522 (20%)

Query: 35  RSVHAHMISSGFKPREHII-NRLIDIYCKSLKLVYAR-TLFDEIPQPDIVARTTLIAAYS 92
           ++VHAH + +G      ++   L  +Y +   +  A   L    P P  VA   ++A   
Sbjct: 189 KAVHAHALKAGLVDAHPLVPGFLAGMYAEGADVAAATAVLLRATPPPRSVAWDAVVACCV 248

Query: 93  ----ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPD 148
                 D ++LA  M    P     T  +NA+++  + +     A+ + R M    + PD
Sbjct: 249 RLGLVDDAMELAGRMARDGPEPTLAT--WNAVLSGCARHGRDREALAVLRRMLEQGLWPD 306

Query: 149 NFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRS 208
             T +S+L ++A      +  M++HC  ++ G         AL+ +Y KC          
Sbjct: 307 ATTVSSLLKSVA-NAGMVRHGMEVHCFFLRHGLVPDAYTGTALVDMYAKC---------G 356

Query: 209 LMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV----GVAWNALIS 264
            +  ARRVFD +  R+  +W +++ G+      +AA E ++ M  N        WN LI+
Sbjct: 357 RLDCARRVFDTLEHRNLATWNSLVAGHAYAGQFEAALELVERMKRNRLDPNVTTWNGLIT 416

Query: 265 GYVHRELK---MLMLR------IQLDEFTYTSVIS------------------------- 290
           GY    L    ML+LR      +  +  ++TS+IS                         
Sbjct: 417 GYSLNGLSSQAMLLLRQIKAAGLTPNVVSWTSLISGSCHNGEYEDSFNFFKEMQKDGVQP 476

Query: 291 ----------ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
                     ACA   L + GK++H + LR       +  + V  AL+ +Y K G +  A
Sbjct: 477 SLVTMLVLLRACAGLALLKKGKELHCFALRR----AYDCDMVVGTALIDMYSKAGSLTSA 532

Query: 341 RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGE 400
           + IF ++  ++LV  NA                               M++GLA +G   
Sbjct: 533 KRIFGRIQNKNLVCCNA-------------------------------MLTGLAVHGQSH 561

Query: 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN--A 458
           E + LF  +   G KP    F   +T+C  +G +  G +    +  + Y    +A N   
Sbjct: 562 EAITLFHDLWRSGLKPDSITFTALLTACRSMGLITEGWEYFDNM-ETKYGVVPTAENYAC 620

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGN 499
           ++ + AR G ++ A  +    P     S W A++     HGN
Sbjct: 621 MVDLLARSGYLDEAMALIERSPVDPGASLWGALLTGCSIHGN 662



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 118/284 (41%), Gaps = 42/284 (14%)

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
           L++EA    E+   ++ + W   ++ LA+ G  +E +  F +M+  G     YA A  + 
Sbjct: 121 LLEEAD---ESEGGKDAVLWNKQVAMLAEAGEWDEAIGAFREMQARGVAADGYALARVLH 177

Query: 427 SCAGLGALENGRQLHAQLVHSGY-DSSLSAGNALITMYARCGVVEAANCV-FNTMPNVDS 484
           +C    A   G+ +HA  + +G  D+       L  MYA    V AA  V     P   S
Sbjct: 178 ACGRAAARREGKAVHAHALKAGLVDAHPLVPGFLAGMYAEGADVAAATAVLLRATPPPRS 237

Query: 485 V-----------------------------------SWNAMIAALGQHGNGARAIELYEQ 509
           V                                   +WNA+++   +HG    A+ +  +
Sbjct: 238 VAWDAVVACCVRLGLVDDAMELAGRMARDGPEPTLATWNAVLSGCARHGRDREALAVLRR 297

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
           ML++G+ PD  T  ++L +  +AG+V+ G          +G+ P        +D+  + G
Sbjct: 298 MLEQGLWPDATTVSSLLKSVANAGMVRHGME-VHCFFLRHGLVPDAYTGTALVDMYAKCG 356

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
           +   A+ V D+L  +  A  W +L+AG    G  +  ++  E++
Sbjct: 357 RLDCARRVFDTLEHRNLA-TWNSLVAGHAYAGQFEAALELVERM 399



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 150/383 (39%), Gaps = 91/383 (23%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           VH   +  G  P  +    L+D+Y K  +L  AR +FD +   ++    +L+A ++ +  
Sbjct: 329 VHCFFLRHGLVPDAYTGTALVDMYAKCGRLDCARRVFDTLEHRNLATWNSLVAGHAYAGQ 388

Query: 97  VKLAREMFNKTPLKMRD--TVFYNAMITAYS----------------------------- 125
            + A E+  +      D     +N +IT YS                             
Sbjct: 389 FEAALELVERMKRNRLDPNVTTWNGLITGYSLNGLSSQAMLLLRQIKAAGLTPNVVSWTS 448

Query: 126 ------HNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA---LALIVEEEKQCMQMHCTV 176
                 HN     +   F++M++D V+P   T   +L A   LAL+    K+  ++HC  
Sbjct: 449 LISGSCHNGEYEDSFNFFKEMQKDGVQPSLVTMLVLLRACAGLALL----KKGKELHCFA 504

Query: 177 VKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY- 235
           ++        V  ALI +Y K  S         + +A+R+F  +  ++ +    M+TG  
Sbjct: 505 LRRAYDCDMVVGTALIDMYSKAGS---------LTSAKRIFGRIQNKNLVCCNAMLTGLA 555

Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANS 295
           V     +A   F D         W    SG            ++ D  T+T++++AC + 
Sbjct: 556 VHGQSHEAITLFHD--------LWR---SG------------LKPDSITFTALLTACRSM 592

Query: 296 GLFRLGKQVHAYLLRTEAK----PTPEFSLPVNNA-LVTLYWKCGKVNEARDIFNQMPER 350
           GL   G +   Y    E K    PT E     N A +V L  + G ++EA  +  + P  
Sbjct: 593 GLITEGWE---YFDNMETKYGVVPTAE-----NYACMVDLLARSGYLDEAMALIERSPVD 644

Query: 351 DLVS-WNAILSAYVSAGLIDEAK 372
              S W A+L+     G +D A+
Sbjct: 645 PGASLWGALLTGCSIHGNLDLAE 667



 Score = 45.4 bits (106), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 99/230 (43%), Gaps = 26/230 (11%)

Query: 439 QLHAQLVHSGYDS-SLSAGNALITMYARCG-------VVEAANCVFNTMPNVDSVSWNAM 490
           QLH+  V +G+ +       AL  + AR G       ++E A+    +    D+V WN  
Sbjct: 84  QLHSLAVRAGHATREPRVACALSDLLARLGRGPSSRRLLEEAD---ESEGGKDAVLWNKQ 140

Query: 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
           +A L + G    AI  + +M   G+  D      VL AC  A   +EG+     +H  + 
Sbjct: 141 VAMLAEAGEWDEAIGAFREMQARGVAADGYALARVLHACGRAAARREGK----AVHA-HA 195

Query: 551 IPPG-EDHYARFIDLLCRAGKFSEAKDVIDSLPF------KPSAPIWEALLAGCRIHGNI 603
           +  G  D +      L  AG ++E  DV  +          P +  W+A++A C   G +
Sbjct: 196 LKAGLVDAHPLVPGFL--AGMYAEGADVAAATAVLLRATPPPRSVAWDAVVACCVRLGLV 253

Query: 604 DLGIQAAEQLFQLMPHHA-GTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           D  ++ A ++ +  P     T+  + +  A  GR  +A  V + M ++G+
Sbjct: 254 DDAMELAGRMARDGPEPTLATWNAVLSGCARHGRDREALAVLRRMLEQGL 303


>gi|449482566|ref|XP_004156326.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Cucumis sativus]
          Length = 908

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 254/772 (32%), Positives = 399/772 (51%), Gaps = 91/772 (11%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L   VH  ++  G      I N L+ +YCK   L     LF+E+P+ DI +  T+I++  
Sbjct: 214 LGSQVHGIVVKLGLLSCVFICNALMGLYCKCGFLDLVLRLFEEMPERDITSWNTVISS-- 271

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR-DDVKPDNFT 151
                                      ++  + ++     A + FR M+    +K D+F+
Sbjct: 272 ---------------------------LVKEFKYDE----AFDYFRGMQLCKGLKVDHFS 300

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
            +++L+A A  V+  K   Q+H   +K G     SV ++LI  Y KC S+  V+      
Sbjct: 301 LSTLLTACAGSVKPMKG-QQLHALALKVGLESHLSVSSSLIGFYTKCGSANDVTD----- 354

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE- 270
               +F+ MP RD ++WT M+T Y++   LD+A E  + M +   +++NA+++G    + 
Sbjct: 355 ----LFETMPIRDVITWTGMITSYMEFGMLDSAVEVFNKMPKRNCISYNAVLAGLSRNDD 410

Query: 271 --------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
                   ++ML   +++ + T TS+I+AC     F++ +Q+  ++++            
Sbjct: 411 GSRALELFIEMLEEGVEISDCTLTSIITACGLLKSFKVSQQIQGFVMKFGILSNS----C 466

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
           +  ALV +Y +CG++ +A  IF Q   E D   + A+L                      
Sbjct: 467 IETALVDMYTRCGRMEDAEKIFYQRSLEND---YTAML---------------------- 501

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS-CAGLGALENGRQL 440
                T MI G A+NG   E + LF   + EG    D   + +I S C  +G  E G Q+
Sbjct: 502 -----TSMICGYARNGKLNEAISLFHSGQSEGAIVMDEVMSTSILSLCGSIGFHEMGMQM 556

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           H   + SG  +    GNA ++MY++C  ++ A  VFNTM   D VSWN ++A    H  G
Sbjct: 557 HCHALKSGLITETGVGNATVSMYSKCWNMDDAVRVFNTMNMQDIVSWNGLVAGHVLHWQG 616

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHA--GLVKEGRRYFETMHGPYGIPPGEDHY 558
            +A+ ++++M K GI PD ITF  ++SA  H    LV   R  F +M   + I P  +HY
Sbjct: 617 DKALGIWKKMEKAGIKPDSITFALIISAYKHTELNLVDSCRSLFVSMETEHNIKPTLEHY 676

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
           A FI +L R G   EA+  I ++P +P   +W ALL  CRI+ N  L   AA  +  + P
Sbjct: 677 ASFISVLGRWGLLEEAEQTIRNMPLEPDVYVWRALLNSCRINKNERLEKLAARNILAVEP 736

Query: 619 HHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHP 678
               +Y+L SN+Y+  GRW  + +VR+ MR++G +K P  SWI  +NK+H F   D +HP
Sbjct: 737 KDPLSYILKSNLYSASGRWYYSEKVREDMREKGFRKHPSQSWIIHENKIHSFYARDRSHP 796

Query: 679 EAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGG 738
           + + +Y  LE L+LE  K+GYVPDT FVL ++E  QK+  L  HS KLA  FG++    G
Sbjct: 797 QGKDIYSGLEILILECLKVGYVPDTSFVLQEVEERQKKEFLFYHSGKLAATFGILMTKPG 856

Query: 739 ATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
             ++++KN+R+CGDCHN  K++S V  R+I++RD   FH F DG+CSC DYW
Sbjct: 857 KPIQIVKNVRLCGDCHNFLKYVSIVTRRKILLRDTSGFHWFIDGQCSCTDYW 908



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 135/466 (28%), Positives = 233/466 (50%), Gaps = 40/466 (8%)

Query: 78  QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF 137
           + DI     LI+AY     V+ A ++F  + L   + V Y A+I+ +S +     A+ELF
Sbjct: 127 EEDIFLGNALISAYLKLGLVRDADKVF--SGLSCPNVVSYTALISGFSKSDWEDEAVELF 184

Query: 138 RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
             M    ++P+ +TF ++L+A    ++ +    Q+H  VVK G      + NAL+ +Y K
Sbjct: 185 FAMLDSGIEPNEYTFVAILTACIRNMDYQLGS-QVHGIVVKLGLLSCVFICNALMGLYCK 243

Query: 198 CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGV 257
           C           +    R+F+EMPERD  SW T+++  VK    D A ++  GM    G 
Sbjct: 244 C---------GFLDLVLRLFEEMPERDITSWNTVISSLVKEFKYDEAFDYFRGMQLCKG- 293

Query: 258 AWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTP 317
                               +++D F+ +++++ACA S     G+Q+HA  L+       
Sbjct: 294 --------------------LKVDHFSLSTLLTACAGSVKPMKGQQLHALALKVGL---- 329

Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEA 377
           E  L V+++L+  Y KCG  N+  D+F  MP RD+++W  ++++Y+  G++D A  +F  
Sbjct: 330 ESHLSVSSSLIGFYTKCGSANDVTDLFETMPIRDVITWTGMITSYMEFGMLDSAVEVFNK 389

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
           M +RN +S+  +++GL++N  G   L+LF +M  EG +  D      IT+C  L + +  
Sbjct: 390 MPKRNCISYNAVLAGLSRNDDGSRALELFIEMLEEGVEISDCTLTSIITACGLLKSFKVS 449

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF--NTMPNVDSVSWNAMIAALG 495
           +Q+   ++  G  S+     AL+ MY RCG +E A  +F   ++ N  +    +MI    
Sbjct: 450 QQIQGFVMKFGILSNSCIETALVDMYTRCGRMEDAEKIFYQRSLENDYTAMLTSMICGYA 509

Query: 496 QHGNGARAIELYEQMLKEG-ILPDRITFLTVLSACNHAGLVKEGRR 540
           ++G    AI L+     EG I+ D +   ++LS C   G  + G +
Sbjct: 510 RNGKLNEAISLFHSGQSEGAIVMDEVMSTSILSLCGSIGFHEMGMQ 555


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/597 (37%), Positives = 346/597 (57%), Gaps = 33/597 (5%)

Query: 118 NAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVV 177
           N MIT  S +     A  LF +MR    +PD  T+T+V+S              + C ++
Sbjct: 56  NWMITNLSKDGRIMEARRLFDEMR----EPDVITWTTVISGY------------IKCGMI 99

Query: 178 KSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK 237
           +    LF  V      V    +   ++ S  +   A ++F+EMP ++ +SW TM+ GY +
Sbjct: 100 EEARRLFDRVDAKKNVVTWTAMVGGYIRSNKI-SDAEKLFNEMPNKNVVSWNTMIDGYAQ 158

Query: 238 NDYLDAAREFLDGMSENVGVAWNALIS-----GYVHRELKMLMLRIQLDEFTYTSVISAC 292
           N  +D+A    + M E   V+WN ++S     G +    ++     + D  ++T++I+  
Sbjct: 159 NGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIA-- 216

Query: 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL 352
              GL + G+   A LL       PE ++   NA++T Y +  +++EA D+F +MPERDL
Sbjct: 217 ---GLSKNGRIDEARLLFDR---MPERNVVSWNAMITGYAQNLRLDEALDLFERMPERDL 270

Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM-RL 411
            SWN +++  +  G +  A+ LF  M ++N++SWT MI+G  Q G  EE LK+FS+M   
Sbjct: 271 PSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLST 330

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
            G KP    F   + +C+ L  L  G+Q+H  +  + Y  S    +ALI MY++CG +  
Sbjct: 331 NGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGT 390

Query: 472 ANCVFN--TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           A  +F+       D VSWN +IAA   HG G  AI  +++M K G  PD +T++ +LSAC
Sbjct: 391 ARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSAC 450

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
           +HAGLV+EG +YF+ +     I   EDHYA  +DL  RAG+  EA   I+ L  KPSA +
Sbjct: 451 SHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARV 510

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
           W ALLAGC +H N+ +G QAA++L ++ P +AGTY+LLSN+YA+ G+W +AARVR  M+D
Sbjct: 511 WGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKD 570

Query: 650 RGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFV 706
           +G+KK+PGCSWIEV N+VHVF+V D +H +++ +Y  L  L  +M+K GY P+  F+
Sbjct: 571 KGLKKQPGCSWIEVGNRVHVFVVGDKSHSQSKLIYSLLRDLHSKMKKAGYEPNNDFI 627



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 123/505 (24%), Positives = 216/505 (42%), Gaps = 96/505 (19%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
           N +I    K  +++ AR LFDE+ +PD++  TT+I+ Y     ++ AR +F++   K ++
Sbjct: 56  NWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAK-KN 114

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP-----DNFTFTSVLSALALIVEEEKQ 168
            V + AM+  Y  ++    A +LF +M   +V       D +     + +   + E+  +
Sbjct: 115 VVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPE 174

Query: 169 ----------CMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFD 218
                      M   C  ++    LF  +    +  +   ++   +S    +  AR +FD
Sbjct: 175 RNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAG--LSKNGRIDEARLLFD 232

Query: 219 EMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH-----RELKM 273
            MPER+ +SW  M+TGY +N  LD A +  + M E    +WN +I+G +      R  K+
Sbjct: 233 RMPERNVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKL 292

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE-AKPTP--------------- 317
                + +  ++T++I+ C   G      ++ + +L T  AKP                 
Sbjct: 293 FNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAG 352

Query: 318 ----------------EFSLPVNNALVTLYWKCGKVNEARDIFNQ--MPERDLVSWNAIL 359
                           + S  V +AL+ +Y KCG++  AR +F+     +RDLVSWN I+
Sbjct: 353 LGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGII 412

Query: 360 SAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY 419
           +AY                               A +GYG+E +  F +MR  GFKP D 
Sbjct: 413 AAY-------------------------------AHHGYGKEAINFFKEMRKSGFKPDDV 441

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN----ALITMYARCGVVEAANCV 475
            + G +++C+  G +E G +   +LV    D S+         L+ +  R G ++ A   
Sbjct: 442 TYVGLLSACSHAGLVEEGLKYFDELVK---DRSILVREDHYACLVDLCGRAGRLKEAFGF 498

Query: 476 FNTMPNVDSVS-WNAMIAALGQHGN 499
              +    S   W A++A    H N
Sbjct: 499 IERLETKPSARVWGALLAGCNVHAN 523


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 244/712 (34%), Positives = 380/712 (53%), Gaps = 82/712 (11%)

Query: 80   DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
            ++V    L+  YS    +  A+ +F       ++ V +N M+  +S   + H   ++ R 
Sbjct: 681  ELVLNNALMDMYSKCGCITNAQMIFKMN--NNKNVVSWNTMVGGFSAEGDTHGTFDVLRQ 738

Query: 140  MRR--DDVKPDNFTFTSVLSALALIVEEE--KQCMQMHCTVVKSGTGLFTSVLNALISVY 195
            M    +DVK D  T   +L+A+ +   E       ++HC  +K        V NA ++ Y
Sbjct: 739  MLAGGEDVKADEVT---ILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASY 795

Query: 196  VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
             KC S         +  A+RVF  +  +   SW  ++ G+ +++     R  LD      
Sbjct: 796  AKCGS---------LSYAQRVFHGIRSKTVNSWNALIGGHAQSN---DPRLSLDA----- 838

Query: 256  GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                           L+M +  +  D FT  S++SAC+     RLGK+VH +++R     
Sbjct: 839  --------------HLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRN---- 880

Query: 316  TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
                            W                ERDL  + ++LS Y+  G +   ++LF
Sbjct: 881  ----------------WL---------------ERDLFVYLSVLSLYIHCGELCTVQALF 909

Query: 376  EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
            +AM +++L+SW  +I+G  QNG+ +  L +F QM L G + C  +      +C+ L +L 
Sbjct: 910  DAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLR 969

Query: 436  NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
             GR+ HA  +    +       +LI MYA+ G +  ++ VFN +    + SWNAMI   G
Sbjct: 970  LGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYG 1029

Query: 496  QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
             HG    AI+L+E+M + G  PD +TFL VL+ACNH+GL+ EG RY + M   +G+ P  
Sbjct: 1030 IHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNL 1089

Query: 556  DHYARFIDLLCRAGKFSEAKDVI-DSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614
             HYA  ID+L RAG+  +A  V+ + +  +    IW++LL+ CRIH N+++G + A +LF
Sbjct: 1090 KHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLF 1149

Query: 615  QLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDD 674
            +L P     YVLLSN+YA LG+W+D  +VR+ M +  ++K+ GCSWIE++ KV  F+V +
Sbjct: 1150 ELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGE 1209

Query: 675  ---TAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFG 731
                   E ++++  LE   +++ K+GY PDT  V HD+  ++K   L  HSEKLA+ +G
Sbjct: 1210 RFLDGFEEIKSLWSILE---MKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYG 1266

Query: 732  LMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGK 783
            L+K   G T+RV KNLRIC DCHNA K +SKV+ REIVVRD KRFHHF++G+
Sbjct: 1267 LIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGE 1318



 Score =  136 bits (342), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 141/584 (24%), Positives = 249/584 (42%), Gaps = 86/584 (14%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D V  T +I  Y+   +   +R +F+   L+ ++   +NA+I++YS N      +E F +
Sbjct: 474 DDVLCTRIITMYAMCGSPDDSRFVFDA--LRSKNLFQWNAVISSYSRNELYDEVLETFIE 531

Query: 140 M-RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
           M    D+ PD+FT+  V+ A A +  +    + +H  VVK+G      V NAL+S Y   
Sbjct: 532 MISTTDLLPDHFTYPCVIKACAGM-SDVGIGLAVHGLVVKTGLVEDVFVGNALVSFY--- 587

Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258
                  +   +  A ++FD MPER+ +SW +M+  +  N + + +   L  M E  G  
Sbjct: 588 ------GTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDG 641

Query: 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE 318
                                 D  T  +V+  CA      LGK VH + ++       +
Sbjct: 642 ------------------AFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRL----D 679

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
             L +NNAL+ +Y KCG +  A+ IF     +++VSWN ++  + + G   +    F+ +
Sbjct: 680 KELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEG---DTHGTFDVL 736

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
           R+        M++G      GE+             K  +     A+  C     L + +
Sbjct: 737 RQ--------MLAG------GED------------VKADEVTILNAVPVCFHESFLPSLK 770

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           +LH   +   +  +    NA +  YA+CG +  A  VF+ + +    SWNA+I    Q  
Sbjct: 771 ELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSN 830

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH- 557
           +   +++ + QM   G+LPD  T  ++LSAC+    ++ G+     +HG + I    +  
Sbjct: 831 DPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKE----VHG-FIIRNWLERD 885

Query: 558 ---YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL- 613
              Y   + L    G+    + + D++  K S   W  ++ G   +G  D  +    Q+ 
Sbjct: 886 LFVYLSVLSLYIHCGELCTVQALFDAMEDK-SLVSWNTVITGYLQNGFPDRALGVFRQMV 944

Query: 614 --------FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
                     +MP      +L S     LGR   A  ++ L+ D
Sbjct: 945 LYGIQLCGISMMPVFGACSLLPS---LRLGREAHAYALKHLLED 985



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/443 (23%), Positives = 196/443 (44%), Gaps = 73/443 (16%)

Query: 60   YCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNA 119
            +  SLK ++  +L  E    ++VA    +A+Y+   ++  A+ +F+    K  ++  +NA
Sbjct: 765  FLPSLKELHCYSLKQEFVYNELVA-NAFVASYAKCGSLSYAQRVFHGIRSKTVNS--WNA 821

Query: 120  MITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKS 179
            +I  ++ +++   +++    M+   + PD+FT  S+LSA + + +  +   ++H  ++++
Sbjct: 822  LIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKL-KSLRLGKEVHGFIIRN 880

Query: 180  GTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND 239
                   V  +++S+Y+ C           +   + +FD M ++  +SW T++TGY++N 
Sbjct: 881  WLERDLFVYLSVLSLYIHC---------GELCTVQALFDAMEDKSLVSWNTVITGYLQNG 931

Query: 240  YLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFR 299
            + D A          +GV              +M++  IQL   +   V  AC+     R
Sbjct: 932  FPDRA----------LGVF------------RQMVLYGIQLCGISMMPVFGACSLLPSLR 969

Query: 300  LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAIL 359
            LG++ HAY L    K   E    +  +L+ +Y K G + ++  +FN + E+   SWNA++
Sbjct: 970  LGREAHAYAL----KHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMI 1025

Query: 360  SAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY 419
              Y   GL  EA                               +KLF +M+  G  P D 
Sbjct: 1026 MGYGIHGLAKEA-------------------------------IKLFEEMQRTGHNPDDL 1054

Query: 420  AFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAA-NCVFN 477
             F G +T+C   G +  G +   Q+  S G   +L     +I M  R G ++ A   V  
Sbjct: 1055 TFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAE 1114

Query: 478  TMPNVDSVS-WNAMIAALGQHGN 499
             M     V  W +++++   H N
Sbjct: 1115 EMSEEADVGIWKSLLSSCRIHQN 1137


>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
 gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
 gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
 gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 244/755 (32%), Positives = 378/755 (50%), Gaps = 103/755 (13%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + VH H++  G++    ++N LI +Y K   +  AR LFD +P+ DI++          
Sbjct: 215 GKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIIS---------- 264

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                                  +NAMI+ Y  N   H  +ELF  MR   V PD  T T
Sbjct: 265 -----------------------WNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLT 301

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           SV+SA  L+  + +    +H  V+ +G  +  SV N+L  +Y+   S            A
Sbjct: 302 SVISACELL-GDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGS---------WREA 351

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
            ++F  M  +D +SWTTM++GY  N   D A +    M ++                   
Sbjct: 352 EKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQD------------------- 392

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
               ++ DE T  +V+SACA  G    G ++H   ++          + V N L+ +Y K
Sbjct: 393 ---SVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISY----VIVANNLINMYSK 445

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
           C  +++A DIF+ +P ++++SW +I                               I+GL
Sbjct: 446 CKCIDKALDIFHNIPRKNVISWTSI-------------------------------IAGL 474

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL 453
             N    E L    QM++   +P       A+ +CA +GAL  G+++HA ++ +G     
Sbjct: 475 RLNNRCFEALIFLRQMKMT-LQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDD 533

Query: 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE 513
              NAL+ MY RCG +  A   FN+    D  SWN ++    + G G+  +EL+++M+K 
Sbjct: 534 FLPNALLDMYVRCGRMNTAWSQFNSQKK-DVTSWNILLTGYSERGQGSMVVELFDRMVKS 592

Query: 514 GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE 573
            + PD ITF+++L  C+ + +V++G  YF  M   YG+ P   HYA  +DLL RAG+  E
Sbjct: 593 RVRPDEITFISLLCGCSKSQMVRQGLMYFSKME-DYGVTPNLKHYACVVDLLGRAGELQE 651

Query: 574 AKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN 633
           A   I  +P  P   +W ALL  CRIH  IDLG  +A+ +F+L     G Y+LL N+YA+
Sbjct: 652 AHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYAD 711

Query: 634 LGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLE 693
            G+W + A+VR++M++ G+  + GCSW+EV  KVH FL DD  HP+ + +   LE    +
Sbjct: 712 CGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEK 771

Query: 694 MRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDC 753
           M ++G    ++    D     ++     HSE+ A+AFGL+    G  + V KNL +C +C
Sbjct: 772 MSEVGLTKISESSSMDETEISRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENC 831

Query: 754 HNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788
           H+  KF+SK V REI VRD + FHHF+DG+CSCGD
Sbjct: 832 HDTVKFISKTVRREISVRDAEHFHHFKDGECSCGD 866



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/400 (28%), Positives = 176/400 (44%), Gaps = 68/400 (17%)

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELF-RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM 170
           R+   +N ++  Y+       A+ L+ R +    VKPD +TF  VL     I +  +   
Sbjct: 158 RNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARG-K 216

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           ++H  VV+ G  L   V+NALI++YVKC           + +AR +FD MP RD +SW  
Sbjct: 217 EVHVHVVRYGYELDIDVVNALITMYVKCGD---------VKSARLLFDRMPRRDIISWNA 267

Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
           M++GY +N       E                          M  L +  D  T TSVIS
Sbjct: 268 MISGYFENGMCHEGLELF----------------------FAMRGLSVDPDLMTLTSVIS 305

Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
           AC   G  RLG+ +HAY++ T         + V N+L  +Y   G   EA  +F++M  +
Sbjct: 306 ACELLGDRRLGRDIHAYVITTGFA----VDISVCNSLTQMYLNAGSWREAEKLFSRMERK 361

Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
           D+VSW                               T MISG   N   ++ +  +  M 
Sbjct: 362 DIVSW-------------------------------TTMISGYEYNFLPDKAIDTYRMMD 390

Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
            +  KP +   A  +++CA LG L+ G +LH   + +   S +   N LI MY++C  ++
Sbjct: 391 QDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCID 450

Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
            A  +F+ +P  + +SW ++IA L  +     A+    QM
Sbjct: 451 KALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQM 490



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 119/478 (24%), Positives = 199/478 (41%), Gaps = 76/478 (15%)

Query: 127 NSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS 186
           N     A++L   M+   V  D   F + L  L      +++  +++   + S + L   
Sbjct: 72  NGKLEEAMKLLNSMQELRVAVDEDVFVA-LVRLCEWKRAQEEGSKVYSIALSSMSSLGVE 130

Query: 187 VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAARE 246
           + NA ++++V+  +         +  A  VF +M ER+  SW  ++ GY K  Y D A  
Sbjct: 131 LGNAFLAMFVRFGN---------LVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMC 181

Query: 247 FLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
               M       W   + G            ++ D +T+  V+  C        GK+VH 
Sbjct: 182 LYHRM------LW---VGG------------VKPDVYTFPCVLRTCGGIPDLARGKEVHV 220

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366
           +++R       E  + V NAL+T+                               YV  G
Sbjct: 221 HVVRY----GYELDIDVVNALITM-------------------------------YVKCG 245

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
            +  A+ LF+ M  R+++SW  MISG  +NG   EGL+LF  MR     P        I+
Sbjct: 246 DVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVIS 305

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
           +C  LG    GR +HA ++ +G+   +S  N+L  MY   G    A  +F+ M   D VS
Sbjct: 306 ACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVS 365

Query: 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG----RRYF 542
           W  MI+    +    +AI+ Y  M ++ + PD IT   VLSAC   G +  G    +   
Sbjct: 366 WTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAI 425

Query: 543 ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
           +     Y I          I++  +     +A D+  ++P + +   W +++AG R++
Sbjct: 426 KARLISYVIVANN-----LINMYSKCKCIDKALDIFHNIP-RKNVISWTSIIAGLRLN 477



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 187/412 (45%), Gaps = 75/412 (18%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R +HA++I++GF     + N L  +Y  +     A  LF  + + DIV+ TT+I+ Y 
Sbjct: 315 LGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYE 374

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                      +N  P K                      AI+ +R M +D VKPD  T 
Sbjct: 375 -----------YNFLPDK----------------------AIDTYRMMDQDSVKPDEITV 401

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            +VLSA A + + +   +++H   +K+    +  V N LI++Y KC           +  
Sbjct: 402 AAVLSACATLGDLDTG-VELHKLAIKARLISYVIVANNLINMYSKC---------KCIDK 451

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A  +F  +P ++ +SWT+++ G   N+    A  FL                    R++K
Sbjct: 452 ALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFL--------------------RQMK 491

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           M +   Q +  T T+ ++ACA  G    GK++HA++LRT      +F LP  NAL+ +Y 
Sbjct: 492 MTL---QPNAITLTAALAACARIGALMCGKEIHAHVLRT-GVGLDDF-LP--NALLDMYV 544

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL----LSWTV 388
           +CG++N A   FN   ++D+ SWN +L+ Y   G       LF+ M +  +    +++  
Sbjct: 545 RCGRMNTAWSQFNS-QKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFIS 603

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
           ++ G +++    +GL  FS+M   G  P    +A  +      G L+   + 
Sbjct: 604 LLCGCSKSQMVRQGLMYFSKMEDYGVTPNLKHYACVVDLLGRAGELQEAHKF 655



 Score = 69.3 bits (168), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 3/208 (1%)

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           + GL  NG  EE +KL + M+       +  F   +  C    A E G ++++  + S  
Sbjct: 66  LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMS 125

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
              +  GNA + M+ R G +  A  VF  M   +  SWN ++    + G    A+ LY +
Sbjct: 126 SLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHR 185

Query: 510 ML-KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568
           ML   G+ PD  TF  VL  C     +  G+         YG     D     I +  + 
Sbjct: 186 MLWVGGVKPDVYTFPCVLRTCGGIPDLARGKE-VHVHVVRYGYELDIDVVNALITMYVKC 244

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           G    A+ + D +P +     W A+++G
Sbjct: 245 GDVKSARLLFDRMP-RRDIISWNAMISG 271


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/553 (38%), Positives = 318/553 (57%), Gaps = 38/553 (6%)

Query: 274 LMLR--IQLDEFTYTSVISACANSGLF--RLGKQVHAYLLRTEAK--------------- 314
           LMLR  I+ D  TY  V+ + A  GLF   LG  +H  +LR   +               
Sbjct: 169 LMLRSGIKPDRLTYPFVLKSMA--GLFSTELGMAIHCMILRCGIELDSFVRVSLVDMYVK 226

Query: 315 ------------PTPE-----FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA 357
                        +PE      S  + N L+    K G + +A  +F  MP+++ VSW+ 
Sbjct: 227 VEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENVSWST 286

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
           ++  +   G +D A  LF+ M E+N++SWT M+ G ++NG  E+ L +FS+M  EG +P 
Sbjct: 287 LIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPN 346

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
            +    A+++CA +G LE G ++H  +  +G   + + G AL+ MYA+CG +E+A+ VF 
Sbjct: 347 AFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFG 406

Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKE 537
                   +W  MI     HG+  +AI  ++QM+  GI PD + FL +L+AC H+G V  
Sbjct: 407 ETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDI 466

Query: 538 GRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
           G  +F++M   Y I P   HY   +D+L R+G+  EA   I+ +P  P   IW AL   C
Sbjct: 467 GLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCAC 526

Query: 598 RIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPG 657
           R H    +   A  +L +L P H G Y+ LSN YA LG+W+DA RVR LM++RGV K  G
Sbjct: 527 RAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALGQWEDAERVRVLMQNRGVHKNSG 586

Query: 658 CSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEY 717
            S IEV+ +VH F+  D  H +++A+   LE+++    K GY+P T++VLH+ME ++KE 
Sbjct: 587 WSCIEVEGQVHRFVSGDHDHKDSKAICLKLEEIMAGAVKQGYIPGTEWVLHNMEQEEKED 646

Query: 718 ALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFH 777
            L +H EKLA+AF L+    G T+R++KNL++CGDCH+  K+ SK+  REI++RD KRFH
Sbjct: 647 VLGSHGEKLALAFALICTSPGMTIRIVKNLQVCGDCHSLMKYASKISQREIMLRDMKRFH 706

Query: 778 HFRDGKCSCGDYW 790
           HF+DG CSC D+W
Sbjct: 707 HFKDGSCSCRDHW 719



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 124/487 (25%), Positives = 208/487 (42%), Gaps = 77/487 (15%)

Query: 64  LKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITA 123
           L  ++A+ +   +    ++  T LI++ S   ++  +  +FN    K ++   +NA+I  
Sbjct: 97  LHQIHAQIIIHNLSSSSLIT-TQLISSSSLRKSINHSLAVFNHH--KPKNLFTFNALIRG 153

Query: 124 YSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGL 183
            + NS+   AI  FR M R  +KPD  T+  VL ++A +   E   M +HC +++ G  L
Sbjct: 154 LTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELG-MAIHCMILRCGIEL 212

Query: 184 FTSVLNALISVYVKCVS----------SP--FVSSRSL---------------MGAARRV 216
            + V  +L+ +YVK             SP  F S  S                M  A ++
Sbjct: 213 DSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKL 272

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE------ 270
           F  MP+++ +SW+T++ G+ KN  +D A E  D M E   V+W  ++ G+          
Sbjct: 273 FKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKAL 332

Query: 271 ---LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327
               KML   ++ + FT  S +SACA  G    G ++H Y+       T      +  AL
Sbjct: 333 SMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTE----ALGTAL 388

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWT 387
           V +Y KCG +  A ++F +  ++ + +W                               T
Sbjct: 389 VDMYAKCGNIESASEVFGETEQKSIRTW-------------------------------T 417

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL-VH 446
           VMI G A +G+ E+ +  F QM   G KP +  F   +T+C   G ++ G      + + 
Sbjct: 418 VMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLD 477

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIE 505
              + S+     ++ M  R G ++ A      MP N D V W A+  A   H     A  
Sbjct: 478 YCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKF 537

Query: 506 LYEQMLK 512
              ++LK
Sbjct: 538 ALNKLLK 544



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 140/309 (45%), Gaps = 38/309 (12%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
           N LI   CK+  +  A  LF  +P+ + V+ +TLI  ++ + ++  A E+F++ P K  +
Sbjct: 254 NVLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEK--N 311

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMH 173
            V +  M+  +S N +   A+ +F  M  + V+P+ FT  S LSA A I   E   +++H
Sbjct: 312 VVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAG-LRIH 370

Query: 174 CTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMT 233
             +  +G  L  ++  AL+ +Y KC +         + +A  VF E  ++   +WT M+ 
Sbjct: 371 KYIKDNGLHLTEALGTALVDMYAKCGN---------IESASEVFGETEQKSIRTWTVMIW 421

Query: 234 GYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACA 293
           G+            + G SE     +            +M+   I+ DE  + ++++AC 
Sbjct: 422 GWA-----------IHGHSEQAIACFK-----------QMMFAGIKPDEVVFLALLTACM 459

Query: 294 NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDL 352
           +SG   +G     +          E S+     +V +  + G++ EA     +MP   D 
Sbjct: 460 HSGQVDIGLN---FFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDF 516

Query: 353 VSWNAILSA 361
           V W A+  A
Sbjct: 517 VIWGALFCA 525



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 146/381 (38%), Gaps = 80/381 (20%)

Query: 311 TEAKPTPEFS-------LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV 363
           +E KP    S        P     ++L      + +   I  Q+   +L S + I +  +
Sbjct: 61  SENKPKSSLSALFIPPTTPTEAHFISLIHGSKTILQLHQIHAQIIIHNLSSSSLITTQLI 120

Query: 364 SAGL----IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY 419
           S+      I+ + ++F   + +NL ++  +I GL  N +    +  F  M   G KP   
Sbjct: 121 SSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRL 180

Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSG------------------------------- 448
            +   + S AGL + E G  +H  ++  G                               
Sbjct: 181 TYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDES 240

Query: 449 ---YDSSLSA--GNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503
              +DS  SA   N LI    + G ++ A  +F  MP  ++VSW+ +I    ++G+  RA
Sbjct: 241 PERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRA 300

Query: 504 IELYEQ-------------------------------MLKEGILPDRITFLTVLSACNHA 532
           +EL++Q                               ML+EG+ P+  T ++ LSAC   
Sbjct: 301 MELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKI 360

Query: 533 GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592
           G ++ G R  + +    G+   E      +D+  + G    A +V      K S   W  
Sbjct: 361 GGLEAGLRIHKYIKD-NGLHLTEALGTALVDMYAKCGNIESASEVFGETEQK-SIRTWTV 418

Query: 593 LLAGCRIHGNIDLGIQAAEQL 613
           ++ G  IHG+ +  I   +Q+
Sbjct: 419 MIWGWAIHGHSEQAIACFKQM 439



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 12/220 (5%)

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           Q+HAQ++     SS      LI+  +    +  +  VFN     +  ++NA+I  L  + 
Sbjct: 99  QIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNS 158

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK-EGRRYFETMHGPYGIPPGEDH 557
           +   AI  +  ML+ GI PDR+T+  VL +   AGL   E       M    GI      
Sbjct: 159 HFFNAIFHFRLMLRSGIKPDRLTYPFVLKSM--AGLFSTELGMAIHCMILRCGIELDSFV 216

Query: 558 YARFIDLLCRAGKFSEAKDVIDSLPFK----PSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
               +D+  +  K   A  V D  P +     SA +W  L+ GC   G+    ++ A +L
Sbjct: 217 RVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGS----MKKAVKL 272

Query: 614 FQLMPHHAG-TYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
           F+ MP     ++  L + +A  G  D A  +   M ++ V
Sbjct: 273 FKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNV 312


>gi|326515584|dbj|BAK07038.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 594

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 231/629 (36%), Positives = 339/629 (53%), Gaps = 65/629 (10%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
           Q+H   +K G    TS+ N+L  +Y K            + +  R F   P+++ ++WTT
Sbjct: 16  QVHGYSIKYGADTITSMGNSLCRLYCKSGD---------LESGLRAFKGTPDKNVITWTT 66

Query: 231 MMTGYVKND-YLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVI 289
           M++   +++ YLD                            L ML   +  +EFT TSV+
Sbjct: 67  MISSCAEDENYLDLGLSLF----------------------LDMLEGGVMPNEFTLTSVM 104

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
           S C       LGKQV A+  +       E +LPV N+ + LY + G+ +EA  +F +M  
Sbjct: 105 SLCGARLDMSLGKQVQAFCYKVGC----EANLPVKNSTMYLYLRKGETDEAMRLFEEMDS 160

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
             +++WNA++S Y  A ++D AK    A R R                 G + LKLF  +
Sbjct: 161 SSIITWNAMISGY--AQIMDSAKDDLHA-RSR-----------------GFQALKLFRDL 200

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
                KP  + F+  ++ C+ + ALE G Q+HA  + +G  S +   +AL+ MY +CG +
Sbjct: 201 VRSELKPDLFTFSSILSVCSAMMALEQGEQIHANTIKTGCLSDVVVNSALVNMYNKCGSI 260

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           E A   F  MP    V+W +MI+   QHG    AI+L+E M+  G  P+ ITF+++LSAC
Sbjct: 261 ECATKAFVEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLSGARPNEITFVSLLSAC 320

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
           ++AGLV+E  RYF+ M   Y I P  DHY   +D+  R G+  +A   I    F+P+  I
Sbjct: 321 SYAGLVEEAERYFDMMRNEYHIEPLVDHYGCMVDMFVRLGRLDDAFSFIKRTGFEPNEAI 380

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
           W +L+AGCR HGN++L   AA++L +L P    TYVLL NMY + GRW D ARVRKL + 
Sbjct: 381 WSSLVAGCRSHGNMELAFYAADRLLELKPKVIETYVLLLNMYISTGRWRDVARVRKLAKH 440

Query: 650 RGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVP---DTKFV 706
             V      SWI + +KV+ F  DD  HP+A  +Y+ LE L+ + + +GY P     + +
Sbjct: 441 EDVGVLRDRSWIAIRDKVYFFRADDMTHPQATELYQLLENLLEKAKAVGYEPYQNAPELL 500

Query: 707 LHDMESDQKEYA------LSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFM 760
               E D  + A      +  HSE+LAVA GL++ P GATVRV KN+ +C DCH++ K+ 
Sbjct: 501 FDSKEGDDDKPAAAAGSLIKHHSERLAVALGLLETPPGATVRVTKNITMCRDCHSSIKYF 560

Query: 761 SKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
           S +  REIVVRD KR H F+DG+CSCGD+
Sbjct: 561 SLLANREIVVRDSKRLHKFKDGRCSCGDF 589



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 160/355 (45%), Gaps = 70/355 (19%)

Query: 18  SQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP 77
           S + LC  R  +  SL + V A     G +    + N  + +Y +  +   A  LF+E+ 
Sbjct: 102 SVMSLCGAR--LDMSLGKQVQAFCYKVGCEANLPVKNSTMYLYLRKGETDEAMRLFEEMD 159

Query: 78  QPDIVARTTLIAAY-----SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
              I+    +I+ Y     SA D++  AR                          S G  
Sbjct: 160 SSSIITWNAMISGYAQIMDSAKDDLH-AR--------------------------SRGFQ 192

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           A++LFRD+ R ++KPD FTF+S+LS  + ++  E Q  Q+H   +K+G      V +AL+
Sbjct: 193 ALKLFRDLVRSELKPDLFTFSSILSVCSAMMALE-QGEQIHANTIKTGCLSDVVVNSALV 251

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
           ++Y KC S         +  A + F EMP R  ++WT+M++GY ++     A +  + M 
Sbjct: 252 NMYNKCGS---------IECATKAFVEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDM- 301

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
                    ++SG             + +E T+ S++SAC+ +GL    ++ +  ++R E
Sbjct: 302 ---------VLSG------------ARPNEITFVSLLSACSYAGLVEEAER-YFDMMRNE 339

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAG 366
               P   +     +V ++ + G++++A     +   E +   W+++++   S G
Sbjct: 340 YHIEP--LVDHYGCMVDMFVRLGRLDDAFSFIKRTGFEPNEAIWSSLVAGCRSHG 392



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 58/106 (54%), Gaps = 1/106 (0%)

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           +++C+    ++ G+Q+H   +  G D+  S GN+L  +Y + G +E+    F   P+ + 
Sbjct: 2   LSACSAARRIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNV 61

Query: 485 VSWNAMIAALGQHGNGAR-AIELYEQMLKEGILPDRITFLTVLSAC 529
           ++W  MI++  +  N     + L+  ML+ G++P+  T  +V+S C
Sbjct: 62  ITWTTMISSCAEDENYLDLGLSLFLDMLEGGVMPNEFTLTSVMSLC 107


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 241/665 (36%), Positives = 355/665 (53%), Gaps = 81/665 (12%)

Query: 133 AIELFRDMRRDDVKPDNFTFTSVL---SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLN 189
           A+ L+  M R   +P+ FTF   L   +AL+L +       Q H  + K G      V  
Sbjct: 24  ALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGS----QFHGQITKVGCVFEPFVQT 79

Query: 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS--WTTMMTGYVKNDYLDAAREF 247
            LIS+Y K          SL+  AR+VF+E     +L+  +  +++GYV N     A   
Sbjct: 80  GLISMYCK---------GSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLL 130

Query: 248 LDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY 307
              M+E  GV  N++                     T   +I AC +     LG  +H  
Sbjct: 131 FRQMNEE-GVPVNSV---------------------TLLGLIPACVSPINLELGSSLHCS 168

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367
            L    K   +  + V N  +T+Y KCG                                
Sbjct: 169 TL----KYGFDSDVSVVNCFITMYMKCGS------------------------------- 193

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
           ++ A+ LF+ M  + L+SW  M+SG AQNG     L+L+  M + G  P      G ++S
Sbjct: 194 VNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSS 253

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
           CA LGA   G ++  ++  SG+ S+    NALI MYARCG +  A  VF+ MP    VSW
Sbjct: 254 CANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSW 313

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
            A+I   G HG+G  A++L+++M++ GI PD   F+ VLSAC+HAGL  +G  YF+ M  
Sbjct: 314 TAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKR 373

Query: 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
            Y + PG +HY+  +DLL RAG+  EA+ +I+S+P KP   +W ALL  C+IH N++L  
Sbjct: 374 NYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAE 433

Query: 608 QAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKV 667
            A E++ +L P + G YVLLSN+Y+N        R+R +M+++ +KK+PGCS++E+  +V
Sbjct: 434 LAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRV 493

Query: 668 HVFLVDDTAHPEAQAVYKYLEQL-VLEMRKLGYVPDTKFVLHDMESDQKEYA-LSTHSEK 725
           H F+V D  H ++  +Y+ LE+L  + M++ G  P+     +  ES++  +  +  HSEK
Sbjct: 494 HPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGK-PEKD---NREESNKDGFTRVGVHSEK 549

Query: 726 LAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCS 785
           LAVAFGL+    GA V ++KNLRIC DCH  FK +SK+V R++ VRD  RFHHFR+G CS
Sbjct: 550 LAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDATRFHHFRNGSCS 609

Query: 786 CGDYW 790
           C DYW
Sbjct: 610 CKDYW 614



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 121/449 (26%), Positives = 207/449 (46%), Gaps = 77/449 (17%)

Query: 84  RTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD 143
           +T LI+ Y     V  AR++F +     + TV YNA+++ Y  NS    A+ LFR M  +
Sbjct: 78  QTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEE 137

Query: 144 DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
            V  ++ T   ++ A    +  E     +HC+ +K G     SV+N  I++Y+KC S  +
Sbjct: 138 GVPVNSVTLLGLIPACVSPINLELGS-SLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNY 196

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
                    A+++FDEMP +  +SW  M++GY +N                 G+A N L 
Sbjct: 197 ---------AQKLFDEMPVKGLISWNAMVSGYAQN-----------------GLATNVL- 229

Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
              ++R   M M  +  D  T   V+S+CAN G   +G +V   +  +     P     +
Sbjct: 230 --ELYR--NMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPF----L 281

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
           NNAL+ +Y +CG + +A+ +F+ MPER LVSW AI                         
Sbjct: 282 NNALINMYARCGNLTKAQAVFDGMPERTLVSWTAI------------------------- 316

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
                 I G   +G+GE  ++LF +M   G +P   AF   +++C+  G  + G + + +
Sbjct: 317 ------IGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLE-YFK 369

Query: 444 LVHSGYDSSLSAG----NALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHG 498
           ++   Y   L  G    + ++ +  R G ++ A  +  +MP   D   W A++ A   H 
Sbjct: 370 MMKRNYQ--LEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHK 427

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLS 527
           N   A   +E++++  + P+ I +  +LS
Sbjct: 428 NVELAELAFERVIE--LEPENIGYYVLLS 454



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 163/384 (42%), Gaps = 79/384 (20%)

Query: 27  NPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTT 86
           +PI   L  S+H   +  GF     ++N  I +Y K   + YA+ LFDE+P   +++   
Sbjct: 155 SPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLIS--- 211

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
                                         +NAM++ Y+ N      +EL+R+M  + V 
Sbjct: 212 ------------------------------WNAMVSGYAQNGLATNVLELYRNMDMNGVH 241

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS---VLNALISVYVKCVSSPF 203
           PD  T   VLS+ A +  +       H    K     FTS   + NALI++Y +C +   
Sbjct: 242 PDPVTLVGVLSSCANLGAQSVG----HEVEFKMQASGFTSNPFLNNALINMYARCGN--- 294

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
                 +  A+ VFD MPER  +SWT ++ GY  + + + A +                 
Sbjct: 295 ------LTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFK-------------- 334

Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT-EAKPTPEFSLP 322
                   +M+   I+ D   +  V+SAC+++GL   G +    + R  + +P PE    
Sbjct: 335 --------EMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHY-- 384

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSAYVSAGLIDEAKSLFEAM--R 379
             + +V L  + G++ EA+ +   MP + D   W A+L A      ++ A+  FE +   
Sbjct: 385 --SCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIEL 442

Query: 380 ERNLLSWTVMISGLAQNGYGEEGL 403
           E   + + V++S +  N    +G+
Sbjct: 443 EPENIGYYVLLSNIYSNANNSKGV 466



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 6/214 (2%)

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV 445
           W   +  LA+     + L L+ QM   G +P  + F  A+ SCA L     G Q H Q+ 
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 446 HSGYDSSLSAGNALITMYARCGVVEAANCVF--NTMPNVDSVSWNAMIAALGQHGNGARA 503
             G          LI+MY +  +V+ A  VF  N      +V +NA+++    +   + A
Sbjct: 68  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDA 127

Query: 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR-YFETMHGPYGIPPGEDHYARFI 562
           + L+ QM +EG+  + +T L ++ AC     ++ G   +  T+   YG          FI
Sbjct: 128 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLK--YGFDSDVSVVNCFI 185

Query: 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
            +  + G  + A+ + D +P K     W A+++G
Sbjct: 186 TMYMKCGSVNYAQKLFDEMPVKGLIS-WNAMVSG 218


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 246/750 (32%), Positives = 375/750 (50%), Gaps = 82/750 (10%)

Query: 45   GFKPREHIINRLID----IYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLA 100
            G  P EH ++ L+     + C    LV    L              LI+ Y+ S+ +  A
Sbjct: 405  GITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNA 464

Query: 101  REMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA 160
              +F++ P   +DT+ +N++I+  + N     AIELF  M     + D+ T  SVL A A
Sbjct: 465  VLVFDRMP--HQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACA 522

Query: 161  ----LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
                  V        +H   VK+G    TS+ NAL+ +Y  C         S   +  ++
Sbjct: 523  RSHYWFVGR-----VVHGYSVKTGLIGETSLANALLDMYSNC---------SDWHSTNQI 568

Query: 217  FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLML 276
            F  M +++ +SWT M+T Y +    D     L                       +M++ 
Sbjct: 569  FRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQ----------------------EMVLD 606

Query: 277  RIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK 336
             I+ D F  TSV+   A     + GK VH Y +R       E  LPV NAL+ +Y  C  
Sbjct: 607  GIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGM----EKLLPVANALMEMYVNC-- 660

Query: 337  VNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
                         R++                +EA+ +F+ +  ++++SW  +I G ++N
Sbjct: 661  -------------RNM----------------EEARLVFDHVTNKDIISWNTLIGGYSRN 691

Query: 397  GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
             +  E   LFS M L+ FKP        + + A + +LE GR++HA  +  G+       
Sbjct: 692  NFANESFSLFSDMLLQ-FKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYTS 750

Query: 457  NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
            NAL+ MY +CG +  A  +F+ +   + +SW  MIA  G HG G  A+ L+EQM   G+ 
Sbjct: 751  NALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVE 810

Query: 517  PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
            PD  +F  +L AC H+GL  EG ++F  M   Y I P   HY   +DLL   G   EA +
Sbjct: 811  PDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFE 870

Query: 577  VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636
             I+S+P +P + IW +LL GCRIH ++ L  + A+++F+L P + G YVLL+N+YA   R
Sbjct: 871  FIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLANIYAEAER 930

Query: 637  WDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRK 696
            W+   +++  +  RG+++  GCSWIEV  KVHVF+ D+  HPE   + ++L+ +   MR+
Sbjct: 931  WEAVKKLKNKIGGRGLRENTGCSWIEVRGKVHVFIADNRNHPEWNRIAEFLDHVARRMRE 990

Query: 697  LGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNA 756
             G+ P  K+ L        + AL  HS KLAV FG++ LP G  +RV KN ++C  CH A
Sbjct: 991  EGHDPKKKYSLMGANDAVHDEALCGHSSKLAVTFGVLHLPEGRPIRVTKNSKVCSHCHEA 1050

Query: 757  FKFMSKVVGREIVVRDGKRFHHFRDGKCSC 786
             KF+SK+  REI++RD  RFHHF  G+CSC
Sbjct: 1051 AKFISKMCNREIILRDSSRFHHFEGGRCSC 1080



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 200/452 (44%), Gaps = 75/452 (16%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           L+ AY    ++  AR +F++ P ++ D   + ++++AY+   +    + LFR M+   V 
Sbjct: 136 LVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVS 195

Query: 147 PDNFTFTSVL---SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
           PD    + VL   ++L  I E E     +H  + K G G   +V NALI++Y +C     
Sbjct: 196 PDAHAVSCVLKCIASLGSITEGE----VIHGLLEKLGLGEACAVANALIALYSRC----- 246

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
                 M  A +VFD M  RD +SW + ++GY  N + D A +                 
Sbjct: 247 ----GCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFS-------------- 288

Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY-----LLRTEAKPTPE 318
                   KM     ++   T  SV+ ACA  G   +GK VH Y     LL         
Sbjct: 289 --------KMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSG 340

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSAYVSAGLIDEAKSLFEA 377
               + + LV +Y KCG +  AR +F+ MP +  V  WN I+  Y  A   +E+  LFE 
Sbjct: 341 IDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQ 400

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
           M E                                G  P ++A +  +     L    +G
Sbjct: 401 MHEL-------------------------------GITPDEHALSCLLKCITCLSCARDG 429

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
              H  LV  G+ +  +  NALI+ YA+  +++ A  VF+ MP+ D++SWN++I+    +
Sbjct: 430 LVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSN 489

Query: 498 GNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           G  + AIEL+ +M  +G   D  T L+VL AC
Sbjct: 490 GLNSEAIELFVRMWMQGHELDSTTLLSVLPAC 521



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 138/533 (25%), Positives = 232/533 (43%), Gaps = 79/533 (14%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           + L+  Y    ++  AR +F+  P K    V +N ++  Y+  +    ++ LF  M    
Sbjct: 347 SKLVFMYVKCGDMGSARRVFDAMPSKGNVHV-WNLIMGGYAKAAEFEESLLLFEQMHELG 405

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           + PD    + +L  +  +    +  +  H  +VK G G   +V NALIS Y K       
Sbjct: 406 ITPDEHALSCLLKCITCL-SCARDGLVAHGYLVKLGFGTQCAVCNALISFYAK------- 457

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
              +++  A  VFD MP +D +SW ++++G   N     A E                  
Sbjct: 458 --SNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELF---------------- 499

Query: 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324
                 ++M M   +LD  T  SV+ ACA S  + +G+ VH Y ++T      E SL   
Sbjct: 500 ------VRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGL--IGETSLA-- 549

Query: 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL 384
           NAL+ +Y  C   +    IF  M ++++VSW A++++Y  AGL D+              
Sbjct: 550 NALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDK-------------- 595

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444
                ++GL Q            +M L+G KP  +A    +   AG  +L+ G+ +H   
Sbjct: 596 -----VAGLLQ------------EMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYA 638

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504
           + +G +  L   NAL+ MY  C  +E A  VF+ + N D +SWN +I    ++     + 
Sbjct: 639 IRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESF 698

Query: 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG--EDHYAR-- 560
            L+  ML +   P+ +T   +L A      ++ GR     +H  Y +  G  ED Y    
Sbjct: 699 SLFSDMLLQ-FKPNTVTMTCILPAVASISSLERGRE----IHA-YALRRGFLEDSYTSNA 752

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
            +D+  + G    A+ + D L  K +   W  ++AG  +HG     +   EQ+
Sbjct: 753 LVDMYVKCGALLVARVLFDRLT-KKNLISWTIMIAGYGMHGCGKDAVALFEQM 804



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 150/346 (43%), Gaps = 50/346 (14%)

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
           +Y +V+  C         ++ HA +    A         +   LV  Y KCG +  AR +
Sbjct: 96  SYCAVVQLCGEERSLEAARRAHALV---RAGTGGIIGSVLGKRLVLAYLKCGDLGGARMV 152

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
           F++MP R                               ++  WT ++S  A+ G  +EG+
Sbjct: 153 FDEMPPR-----------------------------VADVRVWTSLMSAYAKAGDFQEGV 183

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
            LF QM+  G  P  +A +  +   A LG++  G  +H  L   G   + +  NALI +Y
Sbjct: 184 SLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALY 243

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
           +RCG +E A  VF++M   D++SWN+ I+    +G   RA++L+ +M  EG     +T L
Sbjct: 244 SRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVL 303

Query: 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPG-------------EDHYARFIDLLCRAGK 570
           +VL AC   G    G+     +HG Y +  G             E   ++ + +  + G 
Sbjct: 304 SVLPACAELGFELVGK----VVHG-YSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGD 358

Query: 571 FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
              A+ V D++P K +  +W  ++ G       +  +   EQ+ +L
Sbjct: 359 MGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHEL 404



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 116/448 (25%), Positives = 190/448 (42%), Gaps = 98/448 (21%)

Query: 176 VVKSGTG-LFTSVLNA-LISVYVKCVSSPFVSSRSLMGAARRVFDEMPER--DELSWTTM 231
           +V++GTG +  SVL   L+  Y+KC           +G AR VFDEMP R  D   WT++
Sbjct: 119 LVRAGTGGIIGSVLGKRLVLAYLKCGD---------LGGARMVFDEMPPRVADVRVWTSL 169

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           M+ Y K      A +F +G+S              + R+++     +  D    + V+  
Sbjct: 170 MSAYAK------AGDFQEGVS--------------LFRQMQCC--GVSPDAHAVSCVLKC 207

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
            A+ G    G+ +H  L +         +  V NAL+ LY +CG                
Sbjct: 208 IASLGSITEGEVIHGLLEKLGLGE----ACAVANALIALYSRCG---------------- 247

Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
                           +++A  +F++M  R+ +SW   ISG   NG+ +  + LFS+M  
Sbjct: 248 ---------------CMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWS 292

Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHA-----------QLVHSGYDSSLSAGNALI 460
           EG +         + +CA LG    G+ +H            + V SG D +L  G+ L+
Sbjct: 293 EGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEAL--GSKLV 350

Query: 461 TMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
            MY +CG + +A  VF+ MP+  +V  WN ++    +      ++ L+EQM + GI PD 
Sbjct: 351 FMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDE 410

Query: 520 ------ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE 573
                 +  +T LS C   GLV  G  Y   +    G           I    ++     
Sbjct: 411 HALSCLLKCITCLS-CARDGLVAHG--YLVKL----GFGTQCAVCNALISFYAKSNMIDN 463

Query: 574 AKDVIDSLPFKPSAPIWEALLAGCRIHG 601
           A  V D +P + +   W ++++GC  +G
Sbjct: 464 AVLVFDRMPHQDTIS-WNSVISGCTSNG 490



 Score = 79.3 bits (194), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 135/327 (41%), Gaps = 70/327 (21%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            +SVH + I +G +    + N L+++Y     +  AR +FD +   DI++  TLI  YS 
Sbjct: 631 GKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSR 690

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
           ++    A E F+                              LF DM     KP+  T T
Sbjct: 691 NN---FANESFS------------------------------LFSDMLL-QFKPNTVTMT 716

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
            +L A+A I   E+   ++H   ++ G    +   NAL+ +YVKC           +  A
Sbjct: 717 CILPAVASISSLERG-REIHAYALRRGFLEDSYTSNALVDMYVKC---------GALLVA 766

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           R +FD + +++ +SWT M+ GY  +     A    + M            SG        
Sbjct: 767 RVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRG----------SG-------- 808

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
               ++ D  ++++++ AC +SGL   G +     +R E K  P+  L     +V L   
Sbjct: 809 ----VEPDTASFSAILYACCHSGLTAEGWKFFN-AMRKEYKIEPK--LKHYTCIVDLLSH 861

Query: 334 CGKVNEARDIFNQMP-ERDLVSWNAIL 359
            G + EA +    MP E D   W ++L
Sbjct: 862 TGNLKEAFEFIESMPIEPDSSIWVSLL 888



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 108/248 (43%), Gaps = 29/248 (11%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R +HA+ +  GF    +  N L+D+Y K   L+ AR LFD + + ++++ T +IA Y  
Sbjct: 731 GREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGM 790

Query: 94  SDNVKLAREMFNKTPLKMR------DTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVK 146
               K A  +F     +MR      DT  ++A++ A  H+       + F  MR++  ++
Sbjct: 791 HGCGKDAVALFE----QMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIE 846

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL-ISVYVKCVSSPFVS 205
           P    +T ++  L+     ++    +    ++  + ++ S+L+   I   VK        
Sbjct: 847 PKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEK---- 902

Query: 206 SRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD-----GMSENVGVAWN 260
                  A RVF   PE     +  +   Y + +  +A ++  +     G+ EN G +W 
Sbjct: 903 ------VADRVFKLEPENTGY-YVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGCSWI 955

Query: 261 ALISGYVH 268
             + G VH
Sbjct: 956 E-VRGKVH 962


>gi|41469322|gb|AAS07178.1| putative pentatricopeptide repeat containing protein [Oryza sativa
           Japonica Group]
 gi|108709518|gb|ABF97313.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 654

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/577 (36%), Positives = 323/577 (55%), Gaps = 50/577 (8%)

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH---RELKMLMLR-------- 277
           T +++ Y      D AR+  DGM     V WNALI GY     RE  +L+ R        
Sbjct: 113 TAVLSFYASCREPDLARKVFDGMPRRNAVTWNALIKGYAQAGRREEAILLFRDMKREGSH 172

Query: 278 IQLDEFTYTSVISACANSG----LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
           +  D +T+ +++S     G       LG  +HA++++                       
Sbjct: 173 VAPDRYTFPALLSGIGREGGSGRTLELGGALHAHVIKAGL-------------------- 212

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
                          ERD     +++S Y +   +++AK  F+ +   + + W+ MIS  
Sbjct: 213 ---------------ERDPFVGASLVSLYAARRTLEDAKVAFDQVGSSDPIVWSSMISAY 257

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL 453
                 E  L +F  M  +  KP  + ++   + C  +G LE G+Q+HA  + S  +   
Sbjct: 258 VNCEEEEGALLIFFNMLCQDIKPTQFVYSTVFSVCGRMGILEMGKQVHAHSLKSNTEKDA 317

Query: 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE 513
           +  NAL+TMY+ CG +  A  VF++   V+ +S+N+MI+ALGQHG    A+E + QM   
Sbjct: 318 AMFNALLTMYSDCGCINDAQKVFSSNDCVNVISYNSMISALGQHGYPKEALEHFRQMKFA 377

Query: 514 GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE 573
           G++PD +T L ++S+ NHAGLV EG + F +M    GI P   HYA  +D+L R+G+  +
Sbjct: 378 GLMPDEVTLLNLISSFNHAGLVHEGLQMFNSMVDIEGIKPMYQHYACVVDMLARSGEIGK 437

Query: 574 AKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN 633
           A   I+ +PF+  AP+W  +L  C  H +I+ G + AE LF++ P+ A  Y+LL N+YA 
Sbjct: 438 AMKTINEMPFEAEAPLWRIVLGACSKHRDIETGKRIAEMLFEMEPYEATNYILLGNIYAR 497

Query: 634 LGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLE 693
           LGRW +A +VR LM +RGV K+   SWIE+  + + F VDD +HP ++ +Y+ L++L+  
Sbjct: 498 LGRWTEAEKVRSLMGERGVYKDDAFSWIEMGQRTYRFGVDDRSHPISREIYRNLDRLIST 557

Query: 694 MRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDC 753
           ++  GYVPD  F  H+++ D+KE +L  H EKLA AFG +  P G T+R++KNLR+CGDC
Sbjct: 558 IKVAGYVPDISFAAHNIQRDRKEESLYYHCEKLAFAFGDLAAPSGGTLRIMKNLRVCGDC 617

Query: 754 HNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           H A+K+ S V GREI++RD +RFHHF  G CSCGDYW
Sbjct: 618 HCAYKYFSLVTGREIILRDNQRFHHFNSGFCSCGDYW 654



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 111/436 (25%), Positives = 191/436 (43%), Gaps = 78/436 (17%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           T +++ Y++     LAR++F+  P   R+ V +NA+I  Y+       AI LFRDM+R+ 
Sbjct: 113 TAVLSFYASCREPDLARKVFDGMP--RRNAVTWNALIKGYAQAGRREEAILLFRDMKREG 170

Query: 145 --VKPDNFTFTSVLSALALIVEEEKQCM---QMHCTVVKSGTGLFTSVLNALISVYVKCV 199
             V PD +TF ++LS +       +       +H  V+K+G      V  +L+S+Y    
Sbjct: 171 SHVAPDRYTFPALLSGIGREGGSGRTLELGGALHAHVIKAGLERDPFVGASLVSLY---- 226

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                ++R  +  A+  FD++   D + W++M++ YV  +  + A               
Sbjct: 227 -----AARRTLEDAKVAFDQVGSSDPIVWSSMISAYVNCEEEEGALLIF----------- 270

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                        ML   I+  +F Y++V S C   G+  +GKQVHA+ L    K   E 
Sbjct: 271 -----------FNMLCQDIKPTQFVYSTVFSVCGRMGILEMGKQVHAHSL----KSNTEK 315

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
              + NAL+T+Y  CG +N+A+ +F+     +++S+N+++SA                  
Sbjct: 316 DAAMFNALLTMYSDCGCINDAQKVFSSNDCVNVISYNSMISA------------------ 357

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
                        L Q+GY +E L+ F QM+  G  P +      I+S    G +  G Q
Sbjct: 358 -------------LGQHGYPKEALEHFRQMKFAGLMPDEVTLLNLISSFNHAGLVHEGLQ 404

Query: 440 LHAQLVH-SGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQH 497
           +   +V   G          ++ M AR G +  A    N MP   ++  W  ++ A  +H
Sbjct: 405 MFNSMVDIEGIKPMYQHYACVVDMLARSGEIGKAMKTINEMPFEAEAPLWRIVLGACSKH 464

Query: 498 GN---GARAIELYEQM 510
            +   G R  E+  +M
Sbjct: 465 RDIETGKRIAEMLFEM 480



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 58/112 (51%), Gaps = 10/112 (8%)

Query: 427 SCAGLGALENGRQLHAQLVHSGY---DSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
           S  GLGA     QLHAQ V  G+   D S     A+++ YA C   + A  VF+ MP  +
Sbjct: 85  SSLGLGA-----QLHAQAVVRGFLGGDDSTILATAVLSFYASCREPDLARKVFDGMPRRN 139

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEG--ILPDRITFLTVLSACNHAG 533
           +V+WNA+I    Q G    AI L+  M +EG  + PDR TF  +LS     G
Sbjct: 140 AVTWNALIKGYAQAGRREEAILLFRDMKREGSHVAPDRYTFPALLSGIGREG 191


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/582 (36%), Positives = 336/582 (57%), Gaps = 53/582 (9%)

Query: 248 LDGMSENVGVAWNALISGY----VHRELKMLM--LRIQ-----LDEFTYTSVISACANSG 296
           LD   +   V +N L+ G     +HR+  +L   +R Q      D +TY   + +CA + 
Sbjct: 77  LDASPDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAATD 136

Query: 297 LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWN 356
              LG+Q+H+    + A+   + ++ V ++ +++Y +CG+ ++A  +F +M  RD+VSWN
Sbjct: 137 GLVLGRQIHS----STARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWN 192

Query: 357 AILSAYVSAGLIDEA--------------------------------------KSLFEAM 378
           A++S +  AGL   A                                      K +F+ M
Sbjct: 193 AMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEM 252

Query: 379 RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438
           R + L+SW  M++    N    E ++LF +M+ +G +P     A  + SC  + AL  G+
Sbjct: 253 RFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGK 312

Query: 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG 498
           ++H  +      SS+   NAL+ MYA CG ++ A  VF++M   D VSW ++I+A G+HG
Sbjct: 313 RIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHG 372

Query: 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558
           +G  AI+L+E+M  +G+ PD I F+ +L+AC+HAGL+  G+ YF +M   + I P  +HY
Sbjct: 373 HGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHY 432

Query: 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618
           A  +DLL RAG   EA D I  +P KP+  +W ALL  CRIH N+D+G+ AA+ L +L P
Sbjct: 433 ACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAP 492

Query: 619 HHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHP 678
              G YVLLSN+YA  GRW D + VR +M  +G+KK PG S  E+ ++VH F + DT+HP
Sbjct: 493 KQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHP 552

Query: 679 EAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGG 738
           +++ +YK L +L+  +R++GY P+ +  LHD+E + KE  LS HSEKLA+AF L+    G
Sbjct: 553 QSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPG 612

Query: 739 ATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFR 780
             +R+  NLR C DCH+A K +S + GREI+++D  R H+ +
Sbjct: 613 TPIRITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIHYMK 654



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 131/545 (24%), Positives = 226/545 (41%), Gaps = 116/545 (21%)

Query: 46  FKPREHIINRLID-----IYCKSLKLVYARTLFD-EIPQPDIVA--RTTLIAAYSASDNV 97
             P  H + RL+D      + +SL+  +AR LF   +P     A  R  LI AY+A   +
Sbjct: 11  LPPAGHALLRLVDSCRAPAHLRSLRAAHARLLFLLRLPSHPASAAVRVKLIQAYAACAAL 70

Query: 98  KLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD--VKPDNFTFTSV 155
             AR + + +P   R TVF+N ++   +  S    A+ LF  MR       PD++T+   
Sbjct: 71  PAARAVLDASP--DRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLA 128

Query: 156 LSALA----LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           L + A    L++       Q+H +  + G      V ++ IS+Y +C   P         
Sbjct: 129 LKSCAATDGLVLGR-----QIHSSTARLGLDGNVFVAHSAISMYARC-GRP--------D 174

Query: 212 AARRVFDEMPERDELSWTTMMTGYVK----NDYLDAAREFL------------------- 248
            A ++F+EM  RD +SW  M++G+         +D  RE +                   
Sbjct: 175 DAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSM 234

Query: 249 ---------------DGMSENVGVAWNALISGYVHRELKM----LMLRIQL-----DEFT 284
                          D M     ++WNA+++ Y + E+ +    L +R+Q      D  T
Sbjct: 235 GKARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVT 294

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
             +V+ +C       LGK++H  + R         S+ + NAL+ +Y  CG + EARD+F
Sbjct: 295 LATVLPSCGEVSALSLGKRIHEVIKRRRMCS----SMLLENALMDMYANCGCLKEARDVF 350

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           + M  RD+VSW +I+SAY                                ++G+G E + 
Sbjct: 351 DSMGTRDVVSWTSIISAY-------------------------------GRHGHGREAID 379

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS-SLSAGNALITMY 463
           LF +M  +G +P   AF   + +C+  G L+ G+     +    + +  L     ++ + 
Sbjct: 380 LFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLL 439

Query: 464 ARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF 522
            R G +  A      MP   +   W A++ A   H N    +   + +L+  + P +  +
Sbjct: 440 GRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLR--LAPKQTGY 497

Query: 523 LTVLS 527
             +LS
Sbjct: 498 YVLLS 502



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 151/387 (39%), Gaps = 54/387 (13%)

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           ++ +C      R  +  HA LL     P+   S  V   L+  Y  C  +  AR + +  
Sbjct: 21  LVDSCRAPAHLRSLRAAHARLLFLLRLPSHPASAAVRVKLIQAYAACAALPAARAVLDAS 80

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
           P+R  V +N +L    +A L  +A  LF +MR                     +G   F 
Sbjct: 81  PDRTTVFFNVLLRGLTAASLHRDALLLFASMR--------------------PQGHACF- 119

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467
                   P  Y +  A+ SCA    L  GRQ+H+     G D ++   ++ I+MYARCG
Sbjct: 120 --------PDHYTYPLALKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCG 171

Query: 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK-EGILPDRITFLTVL 526
             + A  +F  M   D VSWNAMI+     G   RA++++ +++  +   PD  T  ++L
Sbjct: 172 RPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASIL 231

Query: 527 SACNHA---------GLVKEGR-RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
            +   A         G+  E R +   + +    +    + +   ++L  R  K     D
Sbjct: 232 PSMGKARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPD 291

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636
            +      PS     AL  G RIH  I      +  L +           L +MYAN G 
Sbjct: 292 AVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLE---------NALMDMYANCGC 342

Query: 637 WDDAARVRKLMRDRGVKKEPGCSWIEV 663
             +A  V   M  R V      SW  +
Sbjct: 343 LKEARDVFDSMGTRDV-----VSWTSI 364


>gi|125544635|gb|EAY90774.1| hypothetical protein OsI_12377 [Oryza sativa Indica Group]
          Length = 653

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/577 (36%), Positives = 323/577 (55%), Gaps = 50/577 (8%)

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH---RELKMLMLR-------- 277
           T +++ Y      D AR+  DGM     V WNALI GY     RE  +L+ R        
Sbjct: 112 TAVLSFYASCREPDLARKVFDGMPRRNAVTWNALIKGYAQAGRREEAILLFRDMKREGSH 171

Query: 278 IQLDEFTYTSVISACANSG----LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
           +  D +T+ +++S     G       LG  +HA++++                       
Sbjct: 172 VAPDRYTFPALLSGIGREGGSGRTLELGGALHAHVIKAGL-------------------- 211

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
                          ERD     +++S Y +   +++AK  F+ +   + + W+ MIS  
Sbjct: 212 ---------------ERDPFVGASLVSLYAARRTLEDAKVAFDQVGSSDPIVWSSMISAY 256

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL 453
                 E  L +F  M  +  KP  + ++   + C  +G LE G+Q+HA  + S  +   
Sbjct: 257 VNCEEEEGALLIFFNMLCQDIKPTQFVYSTVFSVCGRMGILEMGKQVHAHSLKSNTEKDA 316

Query: 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE 513
           +  NAL+TMY+ CG +  A  VF++   V+ +S+N+MI+ALGQHG    A+E + QM   
Sbjct: 317 AMFNALLTMYSDCGCINDAQKVFSSNDCVNVISYNSMISALGQHGYPKEALEHFRQMKFA 376

Query: 514 GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE 573
           G++PD +T L ++S+ NHAGLV EG + F +M    GI P   HYA  +D+L R+G+  +
Sbjct: 377 GLMPDEVTLLNLISSFNHAGLVHEGLQMFNSMVDIEGIKPMYQHYACVVDMLARSGEIGK 436

Query: 574 AKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN 633
           A   I+ +PF+  AP+W  +L  C  H +I+ G + AE LF++ P+ A  Y+LL N+YA 
Sbjct: 437 AMKTINEMPFEAEAPLWRIVLGACSKHRDIETGKRIAEMLFEMEPYEATNYILLGNIYAR 496

Query: 634 LGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLE 693
           LGRW +A +VR LM +RGV K+   SWIE+  + + F VDD +HP ++ +Y+ L++L+  
Sbjct: 497 LGRWTEAEKVRSLMGERGVYKDDAFSWIEMGQRTYRFGVDDRSHPISREIYRNLDRLIST 556

Query: 694 MRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDC 753
           ++  GYVPD  F  H+++ D+KE +L  H EKLA AFG +  P G T+R++KNLR+CGDC
Sbjct: 557 IKVAGYVPDISFAAHNIQRDRKEESLYYHCEKLAFAFGDLAAPSGGTLRIMKNLRVCGDC 616

Query: 754 HNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           H A+K+ S V GREI++RD +RFHHF  G CSCGDYW
Sbjct: 617 HCAYKYFSLVTGREIILRDNQRFHHFNSGFCSCGDYW 653



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 111/436 (25%), Positives = 191/436 (43%), Gaps = 78/436 (17%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           T +++ Y++     LAR++F+  P   R+ V +NA+I  Y+       AI LFRDM+R+ 
Sbjct: 112 TAVLSFYASCREPDLARKVFDGMP--RRNAVTWNALIKGYAQAGRREEAILLFRDMKREG 169

Query: 145 --VKPDNFTFTSVLSALALIVEEEKQCM---QMHCTVVKSGTGLFTSVLNALISVYVKCV 199
             V PD +TF ++LS +       +       +H  V+K+G      V  +L+S+Y    
Sbjct: 170 SHVAPDRYTFPALLSGIGREGGSGRTLELGGALHAHVIKAGLERDPFVGASLVSLY---- 225

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                ++R  +  A+  FD++   D + W++M++ YV  +  + A               
Sbjct: 226 -----AARRTLEDAKVAFDQVGSSDPIVWSSMISAYVNCEEEEGALLIF----------- 269

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                        ML   I+  +F Y++V S C   G+  +GKQVHA+ L    K   E 
Sbjct: 270 -----------FNMLCQDIKPTQFVYSTVFSVCGRMGILEMGKQVHAHSL----KSNTEK 314

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
              + NAL+T+Y  CG +N+A+ +F+     +++S+N+++SA                  
Sbjct: 315 DAAMFNALLTMYSDCGCINDAQKVFSSNDCVNVISYNSMISA------------------ 356

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
                        L Q+GY +E L+ F QM+  G  P +      I+S    G +  G Q
Sbjct: 357 -------------LGQHGYPKEALEHFRQMKFAGLMPDEVTLLNLISSFNHAGLVHEGLQ 403

Query: 440 LHAQLVH-SGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQH 497
           +   +V   G          ++ M AR G +  A    N MP   ++  W  ++ A  +H
Sbjct: 404 MFNSMVDIEGIKPMYQHYACVVDMLARSGEIGKAMKTINEMPFEAEAPLWRIVLGACSKH 463

Query: 498 GN---GARAIELYEQM 510
            +   G R  E+  +M
Sbjct: 464 RDIETGKRIAEMLFEM 479



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 58/112 (51%), Gaps = 10/112 (8%)

Query: 427 SCAGLGALENGRQLHAQLVHSGY---DSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
           S  GLGA     QLHAQ V  G+   D S     A+++ YA C   + A  VF+ MP  +
Sbjct: 84  SSLGLGA-----QLHAQAVVRGFLGGDDSTILATAVLSFYASCREPDLARKVFDGMPRRN 138

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEG--ILPDRITFLTVLSACNHAG 533
           +V+WNA+I    Q G    AI L+  M +EG  + PDR TF  +LS     G
Sbjct: 139 AVTWNALIKGYAQAGRREEAILLFRDMKREGSHVAPDRYTFPALLSGIGREG 190


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/571 (38%), Positives = 323/571 (56%), Gaps = 45/571 (7%)

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE---------LKMLMLRIQ 279
           T ++T YV+   LD AR  LD M E   V+W  +ISGY   E         +KML     
Sbjct: 49  TRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCI 108

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            +E+T  +V+++C+       GKQVH+ L++T                            
Sbjct: 109 PNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNF-------------------------- 142

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
                    E  +   +++L  Y  +  I EA+ +F+ + ER+++S T +ISG AQ G  
Sbjct: 143 ---------ESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLD 193

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
           EE L LF Q+  EG +     F   +T+ +GL +L+ G+Q+HA ++       ++  N+L
Sbjct: 194 EEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSL 253

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           I MY++CG +  +  VF+ M     VSWNAM+   G+HG G   I L++ + KE + PD 
Sbjct: 254 IDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDS 312

Query: 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579
           +T L VLS C+H GLV EG   F+T+           HY   IDLL R+G+  +A ++I+
Sbjct: 313 VTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIE 372

Query: 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639
           ++PF+ +  IW +LL  CR+H N+ +G   A++L ++ P +AG YV+LSN+YA  G W D
Sbjct: 373 NMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKD 432

Query: 640 AARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGY 699
             +VRKLM ++ V KEPG SWI +D  +H F   +  HP  + +   ++++ ++++  G+
Sbjct: 433 VFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGF 492

Query: 700 VPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKF 759
           VPD   VLHD++ +QKE  L  HSEKLA+ FGLM  P G T+RV+KNLRIC DCHN  KF
Sbjct: 493 VPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKF 552

Query: 760 MSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +SKV  REI +RD  RFH    G C+CGDYW
Sbjct: 553 VSKVYEREISLRDKNRFHLLTHGNCTCGDYW 583



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 160/328 (48%), Gaps = 59/328 (17%)

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           Y + I+AC        G+QVHA ++    +P    ++ +   LVT+Y +CG +++AR++ 
Sbjct: 13  YEAAITACIERRALWEGRQVHARMITARYRP----AVFLGTRLVTMYVRCGALDDARNVL 68

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           ++MPER +VSW                               T MISG +Q     E L 
Sbjct: 69  DRMPERSVVSW-------------------------------TTMISGYSQTERHVEALD 97

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           LF +M   G  P +Y  A  +TSC+G  ++  G+Q+H+ LV + ++S +  G++L+ MYA
Sbjct: 98  LFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYA 157

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           +   ++ A  VF+T+P  D VS  A+I+   Q G    A++L+ Q+  EG+  + +TF T
Sbjct: 158 KSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTT 217

Query: 525 VLSACN-----------HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE 573
           +++A +           HA ++++   +F  +                ID+  + GK   
Sbjct: 218 LVTALSGLASLDYGKQVHALILRKELPFFVALQNS------------LIDMYSKCGKLLY 265

Query: 574 AKDVIDSLPFKPSAPIWEALLAGCRIHG 601
           ++ V D++  + S   W A+L G   HG
Sbjct: 266 SRRVFDNM-LERSVVSWNAMLMGYGRHG 292



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 128/504 (25%), Positives = 216/504 (42%), Gaps = 110/504 (21%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF 73
           + Y + +  C  R  +     R VHA MI++ ++P   +  RL+ +Y +   L  AR + 
Sbjct: 11  HEYEAAITACIERRALWE--GRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVL 68

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
           D +P+  +V+ TT                                 MI+ YS       A
Sbjct: 69  DRMPERSVVSWTT---------------------------------MISGYSQTERHVEA 95

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
           ++LF  M R    P+ +T  +VL++ +   +   Q  Q+H  +VK+       V ++L+ 
Sbjct: 96  LDLFIKMLRAGCIPNEYTLATVLTSCS-GPQSIYQGKQVHSLLVKTNFESHMFVGSSLLD 154

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
           +Y K  +         +  ARRVFD +PERD +S T +++GY +            G+ E
Sbjct: 155 MYAKSEN---------IQEARRVFDTLPERDVVSCTAIISGYAQK-----------GLDE 194

Query: 254 NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
                +  L S             +Q +  T+T++++A +       GKQVHA +LR E 
Sbjct: 195 EALDLFRQLYSE-----------GMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKEL 243

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
                F + + N+L+ +Y KCGK+  +R +F+ M ER +VSWNA+L  Y   GL  E  S
Sbjct: 244 P----FFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVIS 299

Query: 374 LFEAMRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
           LF+ + +    + ++   ++SG +  G  +EGL +F  +  E                  
Sbjct: 300 LFKDLHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKE------------------ 341

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNA 489
                      + L+H+G+         +I +  R G +E A  +   MP   + S W +
Sbjct: 342 ----------QSALLHTGH------YGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGS 385

Query: 490 MIAALGQHGNGARAIELYEQMLKE 513
           ++ A   H N     EL  Q L E
Sbjct: 386 LLGACRVHAN-VHVGELVAQKLLE 408



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 117/243 (48%), Gaps = 9/243 (3%)

Query: 409 MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
           M L G     + +  AIT+C    AL  GRQ+HA+++ + Y  ++  G  L+TMY RCG 
Sbjct: 1   MALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGA 60

Query: 469 VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528
           ++ A  V + MP    VSW  MI+   Q      A++L+ +ML+ G +P+  T  TVL++
Sbjct: 61  LDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTS 120

Query: 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHY---ARFIDLLCRAGKFSEAKDVIDSLPFKP 585
           C+    + +G++    +H        E H    +  +D+  ++    EA+ V D+LP + 
Sbjct: 121 CSGPQSIYQGKQ----VHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERD 176

Query: 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLF-QLMPHHAGTYVLLSNMYANLGRWDDAARVR 644
                 A+++G    G  +  +    QL+ + M  +  T+  L    + L   D   +V 
Sbjct: 177 VVSC-TAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVH 235

Query: 645 KLM 647
            L+
Sbjct: 236 ALI 238



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 153/353 (43%), Gaps = 74/353 (20%)

Query: 12  LANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYART 71
           + N Y     L     P +    + VH+ ++ + F+    + + L+D+Y KS  +  AR 
Sbjct: 108 IPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARR 167

Query: 72  LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           +FD +P+ D+V+ T                                 A+I+ Y+      
Sbjct: 168 VFDTLPERDVVSCT---------------------------------AIISGYAQKGLDE 194

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
            A++LFR +  + ++ ++ TFT++++AL+ +   +    Q+H  +++     F ++ N+L
Sbjct: 195 EALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYG-KQVHALILRKELPFFVALQNSL 253

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           I +Y KC    +         +RRVFD M ER  +SW  M+ GY ++           G+
Sbjct: 254 IDMYSKCGKLLY---------SRRVFDNMLERSVVSWNAMLMGYGRH-----------GL 293

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
              V   +  L     H+E+K        D  T  +V+S C++ GL   G  +   +++ 
Sbjct: 294 GHEVISLFKDL-----HKEVKP-------DSVTLLAVLSGCSHGGLVDEGLDIFDTVVKE 341

Query: 312 EAK--PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSA 361
           ++    T  +       ++ L  + G++ +A ++   MP     S W ++L A
Sbjct: 342 QSALLHTGHY-----GCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGA 389


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 240/749 (32%), Positives = 381/749 (50%), Gaps = 102/749 (13%)

Query: 47   KPREHII--NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMF 104
            KP  ++I  N LID+YCK  + + A  +FD +P+                          
Sbjct: 407  KPWLNLITSNYLIDMYCKCREPLMAYKVFDSMPE-------------------------- 440

Query: 105  NKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE 164
                   R+ V ++A+++ +  N +   ++ LF +M R  + P+ FTF++ L A  L+  
Sbjct: 441  -------RNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNA 493

Query: 165  EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERD 224
             EK  +Q+H   +K G  +   V N+L+ +Y KC           +  A +VF  + +R 
Sbjct: 494  LEKG-LQIHGFCLKIGFEMMVEVGNSLVDMYSKC---------GRINEAEKVFRRIVDRS 543

Query: 225  ELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFT 284
             +SW  M+ G+V   Y   A +    M E                      ++ + DEFT
Sbjct: 544  LISWNAMIAGFVHAGYGSKALDTFGMMQEA--------------------NIKERPDEFT 583

Query: 285  YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
             TS++ AC+++G+   GKQ+H +L+R+     P  S  +  +LV LY KCG +  AR   
Sbjct: 584  LTSLLKACSSTGMIYAGKQIHGFLVRS-GFHCPS-SATITGSLVDLYVKCGYLFSAR--- 638

Query: 345  NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
                                          F+ ++E+ ++SW+ +I G AQ G   E + 
Sbjct: 639  ----------------------------KAFDQIKEKTMISWSSLILGYAQEGEFVEAMG 670

Query: 405  LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
            LF +++    +   +A +  I   A    L  G+Q+ A  V        S  N+++ MY 
Sbjct: 671  LFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYL 730

Query: 465  RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
            +CG+V+ A   F  M   D +SW  +I   G+HG G +++ ++ +ML+  I PD + +L 
Sbjct: 731  KCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLA 790

Query: 525  VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584
            VLSAC+H+G++KEG   F  +   +GI P  +HYA  +DLL RAG+  EAK +ID++P K
Sbjct: 791  VLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIK 850

Query: 585  PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVR 644
            P+  IW+ LL+ CR+HG+I+LG +  + L ++   +   YV++SN+Y   G W++    R
Sbjct: 851  PNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNAR 910

Query: 645  KLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMR-KLGYVPDT 703
            +L   +G+KKE G SW+E++ +VH F   + +HP    + + L++    +R +LGYV   
Sbjct: 911  ELGNIKGLKKEAGMSWVEIEREVHFFRSGEDSHPLTPVIQETLKEAERRLREELGYVYGL 970

Query: 704  KFVLHDMESDQKEYALSTHSEKLAVAFGLMK---LPGGATVRVLKNLRICGDCHNAFKFM 760
            K  LHD++ + KE  L  HSEKLA+   L        G T+RV KNLR+C DCH   K +
Sbjct: 971  KHELHDIDDESKEENLRAHSEKLAIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGL 1030

Query: 761  SKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
            SK+     VVRD  RFH F DG CSCGDY
Sbjct: 1031 SKITKIAYVVRDAVRFHSFEDGCCSCGDY 1059



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 116/459 (25%), Positives = 199/459 (43%), Gaps = 94/459 (20%)

Query: 2   MMKNADYIRTLANRYA--SQLQLCDPRNPITSSLARSVHAHMISSGFK--PREHIINRLI 57
           MM+ A+ I+   + +   S L+ C     I +   + +H  ++ SGF       I   L+
Sbjct: 569 MMQEAN-IKERPDEFTLTSLLKACSSTGMIYA--GKQIHGFLVRSGFHCPSSATITGSLV 625

Query: 58  DIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFY 117
           D+Y K   L  AR  FD+I +  +++ ++LI  Y+                   ++  F 
Sbjct: 626 DLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYA-------------------QEGEFV 666

Query: 118 NAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVV 177
            AM               LF+ ++  + + D+F  +S++   A      +Q  QM    V
Sbjct: 667 EAM--------------GLFKRLQELNSQIDSFALSSIIGVFADFA-LLRQGKQMQALAV 711

Query: 178 KSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK 237
           K  +GL TSVLN+++ +Y+KC          L+  A + F EM  +D +SWT ++TGY K
Sbjct: 712 KLPSGLETSVLNSVVDMYLKC---------GLVDEAEKCFAEMQLKDVISWTVVITGYGK 762

Query: 238 NDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGL 297
           +                 G+   ++   Y     +ML   I+ DE  Y +V+SAC++SG+
Sbjct: 763 H-----------------GLGKKSVRIFY-----EMLRHNIEPDEVCYLAVLSACSHSGM 800

Query: 298 FRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS-W 355
            + G+++ + LL T   KP  E    V    V L  + G++ EA+ + + MP +  V  W
Sbjct: 801 IKEGEELFSKLLETHGIKPRVEHYACV----VDLLGRAGRLKEAKHLIDTMPIKPNVGIW 856

Query: 356 NAILSAYVSAGLID---EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
             +LS     G I+   E   +   +  +N  ++ +M +   Q GY  E         ++
Sbjct: 857 QTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIK 916

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
           G K             AG+  +E  R++H     SG DS
Sbjct: 917 GLK-----------KEAGMSWVEIEREVH--FFRSGEDS 942


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/512 (41%), Positives = 319/512 (62%), Gaps = 7/512 (1%)

Query: 282 EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEAR 341
           EF+  SV+ AC     F  G+QVH  +L+T     P     V N++V +Y   G++  AR
Sbjct: 109 EFSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDP----FVGNSMVRMYIDFGEIELAR 164

Query: 342 DIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEE 401
            +F++MP RD+VSWN++++ Y+ AG I+ AK +FE M ++++++WT MIS   QN    +
Sbjct: 165 RVFDRMPNRDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMK 224

Query: 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD-SSLSAGNALI 460
            L LF +M   G +P   A    +++ A LG +E G+ LHA +  +  + SS   G+ALI
Sbjct: 225 ALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALI 284

Query: 461 TMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
            MY++CG +E A  VF ++ +  ++  WN+MI+ L  HG    A++++ +M +  I P+ 
Sbjct: 285 DMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNE 344

Query: 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579
           ITFL +LS C+H GLV+EG+ YFE+MH  Y I P   HY   IDL  RAG+  +A  VI 
Sbjct: 345 ITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQ 404

Query: 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639
           ++PF+     W+A+L+    HG+I++G  AA +  +L P  + +YVLLSN+YA  GRWDD
Sbjct: 405 NMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDD 464

Query: 640 AARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLV-DDTAHPEAQAVYKYLEQLVLEMRKLG 698
            A++R +MR RGVKK  GCS + V+ KVH FL+  +     +  V   + ++V  ++  G
Sbjct: 465 VAKIRLMMRQRGVKKIAGCSSMLVNGKVHEFLLGKELDSSYSGQVLAKIAEVVSRLKLQG 524

Query: 699 YVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFK 758
           Y PD   VL D+E + KE  L+ HSEK+A+AFGL+ +   A + ++KNLR+C DCH   K
Sbjct: 525 YEPDLTQVLLDIEDEGKESLLNLHSEKMAIAFGLIHINKSAPIHIVKNLRVCCDCHCFMK 584

Query: 759 FMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            +SKV  R+I++RD  RFHHF +G CSC +YW
Sbjct: 585 LVSKVYNRQIIMRDQNRFHHFENGCCSCNEYW 616



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 132/513 (25%), Positives = 224/513 (43%), Gaps = 111/513 (21%)

Query: 27  NPITSSL--------ARSVHAHMISSGFKPREHIINRLIDIYCK----SLKLVYARTLFD 74
           NP+ S L         R +HA MI +     +  ++RLI  +C     S  L YA ++F 
Sbjct: 7   NPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLI-AFCSLSGVSGGLDYASSVFS 65

Query: 75  EIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAI 134
            I  P+      LI  +S + N              +   + Y  M++  +++S     +
Sbjct: 66  RIQHPNSFIFFALIKGFSDTSN-------------PVESLILYARMLSCLNYSS----GV 108

Query: 135 ELFRDMRRDDVKPDNFTFTSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
           E              F+  SVL A   L+  +E +  Q+H  V+K+       V N+++ 
Sbjct: 109 E--------------FSIPSVLKACGKLLAFDEGR--QVHGQVLKTHLWFDPFVGNSMVR 152

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
           +Y+             +  ARRVFD MP RD +SW +M+ GY+K   ++ A++  + MS+
Sbjct: 153 MYI---------DFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELAKKVFETMSD 203

Query: 254 NVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304
              V W ++IS YV             +ML L ++ D     SV+SA A+ G    GK +
Sbjct: 204 KDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWL 263

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE-RDLVSWNAILSAYV 363
           HAY+   + + +  F   + +AL+ +Y KCG +  A  +F  +   R++  WN+++S   
Sbjct: 264 HAYVSMNKIELSSGF---IGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMIS--- 317

Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
                                       GLA +G   E L +F +M     +P +  F G
Sbjct: 318 ----------------------------GLAIHGLAREALDIFVEMERMDIEPNEITFLG 349

Query: 424 AITSCAGLGALENGRQLHAQLVHSGYD--SSLSAGNALITMYARCGVVEAANCVFNTMP- 480
            +++C+  G +E G Q + + +H  Y     +     +I ++ R G +E A  V   MP 
Sbjct: 350 LLSTCSHGGLVEEG-QFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPF 408

Query: 481 NVDSVSWNAMIAALGQHGN-------GARAIEL 506
             D ++W A+++A  +HG+         RAIEL
Sbjct: 409 EADLLAWKAILSASMKHGHIEIGKSAALRAIEL 441


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/571 (38%), Positives = 323/571 (56%), Gaps = 45/571 (7%)

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE---------LKMLMLRIQ 279
           T ++T YV+   LD AR  LD M E   V+W  +ISGY   E         +KML     
Sbjct: 81  TRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCI 140

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            +E+T  +V+++C+       GKQVH+ L++T                            
Sbjct: 141 PNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNF-------------------------- 174

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
                    E  +   +++L  Y  +  I EA+ +F+ + ER+++S T +ISG AQ G  
Sbjct: 175 ---------ESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLD 225

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
           EE L LF Q+  EG +     F   +T+ +GL +L+ G+Q+HA ++       ++  N+L
Sbjct: 226 EEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSL 285

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           I MY++CG +  +  VF+ M     VSWNAM+   G+HG G   I L++ + KE + PD 
Sbjct: 286 IDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDS 344

Query: 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579
           +T L VLS C+H GLV EG   F+T+           HY   IDLL R+G+  +A ++I+
Sbjct: 345 VTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIE 404

Query: 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639
           ++PF+ +  IW +LL  CR+H N+ +G   A++L ++ P +AG YV+LSN+YA  G W D
Sbjct: 405 NMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKD 464

Query: 640 AARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGY 699
             +VRKLM ++ V KEPG SWI +D  +H F   +  HP  + +   ++++ ++++  G+
Sbjct: 465 VFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGF 524

Query: 700 VPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKF 759
           VPD   VLHD++ +QKE  L  HSEKLA+ FGLM  P G T+RV+KNLRIC DCHN  KF
Sbjct: 525 VPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKF 584

Query: 760 MSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +SKV  REI +RD  RFH    G C+CGDYW
Sbjct: 585 VSKVYEREISLRDKNRFHLLTHGNCTCGDYW 615



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 160/328 (48%), Gaps = 59/328 (17%)

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           Y + I+AC        G+QVHA ++    +P    ++ +   LVT+Y +CG +++AR++ 
Sbjct: 45  YEAAITACIERRALWEGRQVHARMITARYRP----AVFLGTRLVTMYVRCGALDDARNVL 100

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           ++MPER +VSW                               T MISG +Q     E L 
Sbjct: 101 DRMPERSVVSW-------------------------------TTMISGYSQTERHVEALD 129

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           LF +M   G  P +Y  A  +TSC+G  ++  G+Q+H+ LV + ++S +  G++L+ MYA
Sbjct: 130 LFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYA 189

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           +   ++ A  VF+T+P  D VS  A+I+   Q G    A++L+ Q+  EG+  + +TF T
Sbjct: 190 KSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTT 249

Query: 525 VLSACN-----------HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE 573
           +++A +           HA ++++   +F  +                ID+  + GK   
Sbjct: 250 LVTALSGLASLDYGKQVHALILRKELPFFVALQNS------------LIDMYSKCGKLLY 297

Query: 574 AKDVIDSLPFKPSAPIWEALLAGCRIHG 601
           ++ V D++  + S   W A+L G   HG
Sbjct: 298 SRRVFDNM-LERSVVSWNAMLMGYGRHG 324



 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 128/504 (25%), Positives = 216/504 (42%), Gaps = 110/504 (21%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF 73
           + Y + +  C  R  +     R VHA MI++ ++P   +  RL+ +Y +   L  AR + 
Sbjct: 43  HEYEAAITACIERRALWE--GRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVL 100

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
           D +P+  +V+ TT                                 MI+ YS       A
Sbjct: 101 DRMPERSVVSWTT---------------------------------MISGYSQTERHVEA 127

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
           ++LF  M R    P+ +T  +VL++ +   +   Q  Q+H  +VK+       V ++L+ 
Sbjct: 128 LDLFIKMLRAGCIPNEYTLATVLTSCS-GPQSIYQGKQVHSLLVKTNFESHMFVGSSLLD 186

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE 253
           +Y K  +         +  ARRVFD +PERD +S T +++GY +            G+ E
Sbjct: 187 MYAKSEN---------IQEARRVFDTLPERDVVSCTAIISGYAQK-----------GLDE 226

Query: 254 NVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313
                +  L S             +Q +  T+T++++A +       GKQVHA +LR E 
Sbjct: 227 EALDLFRQLYSE-----------GMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKEL 275

Query: 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
                F + + N+L+ +Y KCGK+  +R +F+ M ER +VSWNA+L  Y   GL  E  S
Sbjct: 276 P----FFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVIS 331

Query: 374 LFEAMRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
           LF+ + +    + ++   ++SG +  G  +EGL +F  +  E                  
Sbjct: 332 LFKDLHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKE------------------ 373

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-WNA 489
                      + L+H+G+         +I +  R G +E A  +   MP   + S W +
Sbjct: 374 ----------QSALLHTGHY------GCIIDLLGRSGRLEKALNLIENMPFESTPSIWGS 417

Query: 490 MIAALGQHGNGARAIELYEQMLKE 513
           ++ A   H N     EL  Q L E
Sbjct: 418 LLGACRVHAN-VHVGELVAQKLLE 440



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 126/271 (46%), Gaps = 9/271 (3%)

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
           R LL       GLA        L+  S M L G     + +  AIT+C    AL  GRQ+
Sbjct: 5   RGLLRPEAAARGLALQRCFVAPLRAASGMALPGASARFHEYEAAITACIERRALWEGRQV 64

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           HA+++ + Y  ++  G  L+TMY RCG ++ A  V + MP    VSW  MI+   Q    
Sbjct: 65  HARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERH 124

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY-- 558
             A++L+ +ML+ G +P+  T  TVL++C+    + +G++    +H        E H   
Sbjct: 125 VEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQ----VHSLLVKTNFESHMFV 180

Query: 559 -ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF-QL 616
            +  +D+  ++    EA+ V D+LP +       A+++G    G  +  +    QL+ + 
Sbjct: 181 GSSLLDMYAKSENIQEARRVFDTLPERDVVSC-TAIISGYAQKGLDEEALDLFRQLYSEG 239

Query: 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647
           M  +  T+  L    + L   D   +V  L+
Sbjct: 240 MQCNHVTFTTLVTALSGLASLDYGKQVHALI 270



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 153/353 (43%), Gaps = 74/353 (20%)

Query: 12  LANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYART 71
           + N Y     L     P +    + VH+ ++ + F+    + + L+D+Y KS  +  AR 
Sbjct: 140 IPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARR 199

Query: 72  LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           +FD +P+ D+V+ T                                 A+I+ Y+      
Sbjct: 200 VFDTLPERDVVSCT---------------------------------AIISGYAQKGLDE 226

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
            A++LFR +  + ++ ++ TFT++++AL+ +   +    Q+H  +++     F ++ N+L
Sbjct: 227 EALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYG-KQVHALILRKELPFFVALQNSL 285

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           I +Y KC    +         +RRVFD M ER  +SW  M+ GY ++           G+
Sbjct: 286 IDMYSKCGKLLY---------SRRVFDNMLERSVVSWNAMLMGYGRH-----------GL 325

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
              V   +  L     H+E+K        D  T  +V+S C++ GL   G  +   +++ 
Sbjct: 326 GHEVISLFKDL-----HKEVKP-------DSVTLLAVLSGCSHGGLVDEGLDIFDTVVKE 373

Query: 312 EAK--PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSA 361
           ++    T  +       ++ L  + G++ +A ++   MP     S W ++L A
Sbjct: 374 QSALLHTGHY-----GCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGA 421


>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 691

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/605 (36%), Positives = 342/605 (56%), Gaps = 69/605 (11%)

Query: 187 VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKN-DYLDAAR 245
           V+N ++ ++VKC          LM  AR++FDEMPE+D  SW TM+ G V   ++ +A R
Sbjct: 155 VMNRVLFMHVKC---------GLMLDARKLFDEMPEKDVASWMTMVGGLVDTGNFSEAFR 205

Query: 246 EFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
            FL          W     G                  T+ ++I A A  GL ++GKQ+H
Sbjct: 206 LFL--------CMWKEFNDGRSR---------------TFATMIRASAGLGLVQVGKQIH 242

Query: 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365
           +  L+        F   V+ AL+ +Y KCG + +A  +F+QMPE+  V WN+I+++Y   
Sbjct: 243 SCALK-RGVGDDHF---VSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALH 298

Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425
           G  +EA                               L L+ +MR  G     +  +  I
Sbjct: 299 GYSEEA-------------------------------LSLYFEMRDSGTTVDHFTISIVI 327

Query: 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV 485
             CA L +LE+ +Q HA LV  G+ + + A  AL+  Y++ G +E A  VFN M + + +
Sbjct: 328 RICARLASLEHAKQAHAALVRHGFATDIVANTALVDFYSKWGRMEDARHVFNRMRHKNVI 387

Query: 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETM 545
           SWNA+IA  G HG G  A+E++EQML+EG+ P  +TFL VLSAC+++GL + G   F +M
Sbjct: 388 SWNALIAGYGNHGQGQEAVEMFEQMLQEGVTPTHVTFLAVLSACSYSGLSQRGWEIFYSM 447

Query: 546 HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDL 605
              + + P   HYA  I+LL R     EA  +I + PFKP+A +W ALL  CR+H N++L
Sbjct: 448 KRDHKVKPRAMHYACMIELLGRESLLDEAYALIRTAPFKPTANMWAALLTACRMHKNLEL 507

Query: 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDN 665
           G  AAE+L+ + P     Y++L N+Y + G+  +AA + + ++ +G++  P CSW+EV  
Sbjct: 508 GKLAAEKLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGILQTLKKKGLRMLPACSWVEVKK 567

Query: 666 KVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEK 725
           + + FL  D +H + + +Y+ ++ L++E+ K GY  + + +L D++ ++++  L  HSEK
Sbjct: 568 QPYAFLCGDKSHSQTKEIYQKVDNLMVEICKHGYAEENETLLPDVD-EEEQRILKYHSEK 626

Query: 726 LAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCS 785
           LA+AFGL+  P    +++ +  R+CGDCH+A K ++ V GREIVVRD  RFHHFR+G CS
Sbjct: 627 LAIAFGLINTPHWTPLQITQGHRVCGDCHSAIKLIAMVTGREIVVRDASRFHHFRNGSCS 686

Query: 786 CGDYW 790
           CGDYW
Sbjct: 687 CGDYW 691



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 146/310 (47%), Gaps = 8/310 (2%)

Query: 325 NALVTLYWKCGKVNEARDIFNQMP----ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           +ALV+       +   + +FN M     E DL   N +L  +V  GL+ +A+ LF+ M E
Sbjct: 122 DALVSACVGLRSIRGVKRVFNYMINSGFEPDLYVMNRVLFMHVKCGLMLDARKLFDEMPE 181

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440
           +++ SW  M+ GL   G   E  +LF  M  E        FA  I + AGLG ++ G+Q+
Sbjct: 182 KDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRSRTFATMIRASAGLGLVQVGKQI 241

Query: 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500
           H+  +  G         ALI MY++CG +E A+CVF+ MP   +V WN++IA+   HG  
Sbjct: 242 HSCALKRGVGDDHFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYS 301

Query: 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560
             A+ LY +M   G   D  T   V+  C     ++  ++    +   +G          
Sbjct: 302 EEALSLYFEMRDSGTTVDHFTISIVIRICARLASLEHAKQAHAAL-VRHGFATDIVANTA 360

Query: 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ--LMP 618
            +D   + G+  +A+ V + +  K +   W AL+AG   HG     ++  EQ+ Q  + P
Sbjct: 361 LVDFYSKWGRMEDARHVFNRMRHK-NVISWNALIAGYGNHGQGQEAVEMFEQMLQEGVTP 419

Query: 619 HHAGTYVLLS 628
            H     +LS
Sbjct: 420 THVTFLAVLS 429



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 124/520 (23%), Positives = 215/520 (41%), Gaps = 117/520 (22%)

Query: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           + V  +MI+SGF+P  +++NR++ ++ K   ++ AR LFDE+P+                
Sbjct: 138 KRVFNYMINSGFEPDLYVMNRVLFMHVKCGLMLDARKLFDEMPE---------------- 181

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
                            +D   +  M+       N   A  LF  M ++     + TF +
Sbjct: 182 -----------------KDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRSRTFAT 224

Query: 155 VLSALALI--VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
           ++ A A +  V+  KQ   +H   +K G G    V  ALI +Y KC S         +  
Sbjct: 225 MIRASAGLGLVQVGKQ---IHSCALKRGVGDDHFVSCALIDMYSKCGS---------IED 272

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A  VFD+MPE+  + W +++  Y  + Y + A      M +          SG       
Sbjct: 273 AHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSLYFEMRD----------SG------- 315

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                  +D FT + VI  CA        KQ HA L+R          +  N ALV  Y 
Sbjct: 316 -----TTVDHFTISIVIRICARLASLEHAKQAHAALVRHGFAT----DIVANTALVDFYS 366

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           K G++ +AR +FN+M  ++++SWNA+++ Y                              
Sbjct: 367 KWGRMEDARHVFNRMRHKNVISWNALIAGY------------------------------ 396

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
              +G G+E +++F QM  EG  P    F   +++C+  G  + G ++   +        
Sbjct: 397 -GNHGQGQEAVEMFEQMLQEGVTPTHVTFLAVLSACSYSGLSQRGWEIFYSMKRDHKVKP 455

Query: 453 LSAGNA-LITMYARCGVVEAANCVFNTMPNVDSVS-WNAMIAALGQHGN---GARAIE-L 506
            +   A +I +  R  +++ A  +  T P   + + W A++ A   H N   G  A E L
Sbjct: 456 RAMHYACMIELLGRESLLDEAYALIRTAPFKPTANMWAALLTACRMHKNLELGKLAAEKL 515

Query: 507 YEQMLKEGILPDRI-TFLTVLSACNHAGLVKEGRRYFETM 545
           Y      G+ P+++  ++ +L+  N +G +KE     +T+
Sbjct: 516 Y------GMEPEKLCNYIVLLNLYNSSGKLKEAAGILQTL 549



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 103/205 (50%), Gaps = 8/205 (3%)

Query: 401 EGLKLFSQMRLE--GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
           E ++LF  + LE  G+      +   +++C GL ++   +++   +++SG++  L   N 
Sbjct: 99  EAMELFEILELEHDGYGVGASTYDALVSACVGLRSIRGVKRVFNYMINSGFEPDLYVMNR 158

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           ++ M+ +CG++  A  +F+ MP  D  SW  M+  L   GN + A  L+  M KE     
Sbjct: 159 VLFMHVKCGLMLDARKLFDEMPEKDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGR 218

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR--FIDLLCRAGKFSEAKD 576
             TF T++ A    GLV+ G++   +     G+  G+DH+     ID+  + G   +A  
Sbjct: 219 SRTFATMIRASAGLGLVQVGKQ-IHSCALKRGV--GDDHFVSCALIDMYSKCGSIEDAHC 275

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHG 601
           V D +P K +   W +++A   +HG
Sbjct: 276 VFDQMPEKTTVG-WNSIIASYALHG 299



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 136/339 (40%), Gaps = 72/339 (21%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D      LI  YS   +++ A  +F++ P K   TV +N++I +Y+ +     A+ L+ +
Sbjct: 253 DHFVSCALIDMYSKCGSIEDAHCVFDQMPEK--TTVGWNSIIASYALHGYSEEALSLYFE 310

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           MR      D+FT + V+   A +   E    Q H  +V+ G         AL+  Y    
Sbjct: 311 MRDSGTTVDHFTISIVIRICARLASLE-HAKQAHAALVRHGFATDIVANTALVDFY---- 365

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                S    M  AR VF+ M  ++ +SW  ++ GY  +     A E  +          
Sbjct: 366 -----SKWGRMEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEAVEMFE---------- 410

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE- 318
                       +ML   +     T+ +V+SAC+ SGL + G ++  Y ++ + K  P  
Sbjct: 411 ------------QMLQEGVTPTHVTFLAVLSACSYSGLSQRGWEIF-YSMKRDHKVKPRA 457

Query: 319 -------------------FSL-------PVNNALVTLYWKC--------GKVNEARDIF 344
                              ++L       P  N    L   C        GK+  A  ++
Sbjct: 458 MHYACMIELLGRESLLDEAYALIRTAPFKPTANMWAALLTACRMHKNLELGKL-AAEKLY 516

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
              PE+ L ++  +L+ Y S+G + EA  + + ++++ L
Sbjct: 517 GMEPEK-LCNYIVLLNLYNSSGKLKEAAGILQTLKKKGL 554



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 6/134 (4%)

Query: 31  SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ----PDIVARTT 86
           S  A S++  M  SG       I+ +I I  +   L +A+     + +     DIVA T 
Sbjct: 301 SEEALSLYFEMRDSGTTVDHFTISIVIRICARLASLEHAKQAHAALVRHGFATDIVANTA 360

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           L+  YS    ++ AR +FN+  ++ ++ + +NA+I  Y ++  G  A+E+F  M ++ V 
Sbjct: 361 LVDFYSKWGRMEDARHVFNR--MRHKNVISWNALIAGYGNHGQGQEAVEMFEQMLQEGVT 418

Query: 147 PDNFTFTSVLSALA 160
           P + TF +VLSA +
Sbjct: 419 PTHVTFLAVLSACS 432


>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Glycine max]
          Length = 586

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/631 (35%), Positives = 341/631 (54%), Gaps = 74/631 (11%)

Query: 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS 227
           Q  Q+H  V K G  +   V N++I +Y KC          ++G A RVF+ +P R+ +S
Sbjct: 22  QGKQVHGVVEKLGFDVIXVVGNSMIDMYSKC---------GMVGEAARVFNTLPVRNVIS 72

Query: 228 WTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTS 287
           W  M+ GY      + A      M E   V                       D +TY+S
Sbjct: 73  WNAMIAGYTNERNGEEALNLFREMREKGEVP----------------------DGYTYSS 110

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
            + AC+ +     G Q+HA L+R    P    S  V  ALV LY KC ++ EAR +F+++
Sbjct: 111 SLKACSCADAAGEGMQIHAALIR-HGFPYLAQS-AVAGALVDLYVKCRRMAEARKVFDRI 168

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
            E+ ++SW+ ++  Y     + EA  LF  +RE                          S
Sbjct: 169 EEKSVMSWSTLILGYAQEDNLKEAMDLFRELRE--------------------------S 202

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD-SSLSAGNALITMYARC 466
           + R++GF       +  I   A    LE G+Q+HA  +   Y    +S  N+++ MY +C
Sbjct: 203 RHRMDGF-----VLSSIIGVFADFALLEQGKQMHAYTIKVPYGLLEMSVANSVLDMYMKC 257

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G+   A+ +F  M   + VSW  MI   G+HG G +A+EL+ +M + GI PD +T+L VL
Sbjct: 258 GLTVEADALFREMLERNVVSWTVMITGYGKHGIGNKAVELFNEMQENGIEPDSVTYLAVL 317

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
           SAC+H+GL+KEG++YF  +     I P  +HYA  +DLL R G+  EAK++I+ +P KP+
Sbjct: 318 SACSHSGLIKEGKKYFSILCSNQKIKPKVEHYACMVDLLGRGGRLKEAKNLIEKMPLKPN 377

Query: 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKL 646
             IW+ LL+ CR+HG++++G Q  E L +   ++   YV++SNMYA+ G W ++ ++R+ 
Sbjct: 378 VGIWQTLLSVCRMHGDVEMGKQVGEILLRREGNNPANYVMVSNMYAHAGYWKESEKIRET 437

Query: 647 MRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHP---EAQAVYKYLEQLVLEMRKLGYVPDT 703
           ++ +G+KKE G SW+E+D ++H+F   D  HP   E   V K +E+ V E  ++GYV   
Sbjct: 438 LKRKGLKKEAGRSWVEMDKEIHIFYNGDGMHPLIEEIHEVLKEMEKRVKE--EMGYVHSI 495

Query: 704 KFVLHDMESDQKEYALSTHSEKLAVAFGL----MKLPGGATVRVLKNLRICGDCHNAFKF 759
            F LHD+E + K  +L  HSEKLA+   L    +KL G   +R+ KNLR+CGDCH   K 
Sbjct: 496 NFSLHDVEEESKMESLRVHSEKLAIGLVLVRRGLKLKGERVIRIFKNLRVCGDCHAFIKG 555

Query: 760 MSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +SKV+    VVRD  RFH F +G CSCGDYW
Sbjct: 556 LSKVLKIAFVVRDANRFHRFENGLCSCGDYW 586



 Score =  170 bits (430), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 127/496 (25%), Positives = 226/496 (45%), Gaps = 80/496 (16%)

Query: 55  RLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDT 114
           RL+D   K +  V  +  FD I     V   ++I  YS    V  A  +FN  P+  R+ 
Sbjct: 18  RLLD-QGKQVHGVVEKLGFDVIX----VVGNSMIDMYSKCGMVGEAARVFNTLPV--RNV 70

Query: 115 VFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHC 174
           + +NAMI  Y++  NG  A+ LFR+MR     PD +T++S L A +   +   + MQ+H 
Sbjct: 71  ISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACS-CADAAGEGMQIHA 129

Query: 175 TVVKSGTGLF--TSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMM 232
            +++ G      ++V  AL+ +YVKC           M  AR+VFD + E+  +SW+T++
Sbjct: 130 ALIRHGFPYLAQSAVAGALVDLYVKC---------RRMAEARKVFDRIEEKSVMSWSTLI 180

Query: 233 TGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISAC 292
            GY + D L  A +    + E+                      R ++D F  +S+I   
Sbjct: 181 LGYAQEDNLKEAMDLFRELRES----------------------RHRMDGFVLSSIIGVF 218

Query: 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL 352
           A+  L   GKQ+HAY ++    P     + V N+++ +Y KCG   EA  +F +M ER++
Sbjct: 219 ADFALLEQGKQMHAYTIKV---PYGLLEMSVANSVLDMYMKCGLTVEADALFREMLERNV 275

Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
           VSW  +++ Y   G+                               G + ++LF++M+  
Sbjct: 276 VSWTVMITGYGKHGI-------------------------------GNKAVELFNEMQEN 304

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLV-HSGYDSSLSAGNALITMYARCGVVEA 471
           G +P    +   +++C+  G ++ G++  + L  +      +     ++ +  R G ++ 
Sbjct: 305 GIEPDSVTYLAVLSACSHSGLIKEGKKYFSILCSNQKIKPKVEHYACMVDLLGRGGRLKE 364

Query: 472 ANCVFNTMPNVDSVS-WNAMIAALGQHGNGARAIELYEQML-KEGILPDRITFLTVLSAC 529
           A  +   MP   +V  W  +++    HG+     ++ E +L +EG  P     ++ + A 
Sbjct: 365 AKNLIEKMPLKPNVGIWQTLLSVCRMHGDVEMGKQVGEILLRREGNNPANYVMVSNMYA- 423

Query: 530 NHAGLVKEGRRYFETM 545
            HAG  KE  +  ET+
Sbjct: 424 -HAGYWKESEKIRETL 438



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 184/409 (44%), Gaps = 79/409 (19%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFK--PREHIINRLIDIYCKSLKLVYARTLF 73
           Y+S L+ C   +     +   +HA +I  GF    +  +   L+D+Y K  ++  AR +F
Sbjct: 108 YSSSLKACSCADAAGEGM--QIHAALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVF 165

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
           D I +  +++ +TLI  Y+  DN+K                                  A
Sbjct: 166 DRIEEKSVMSWSTLILGYAQEDNLK---------------------------------EA 192

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFT-SVLNALI 192
           ++LFR++R    + D F  +S++   A     E Q  QMH   +K   GL   SV N+++
Sbjct: 193 MDLFRELRESRHRMDGFVLSSIIGVFADFALLE-QGKQMHAYTIKVPYGLLEMSVANSVL 251

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
            +Y+KC          L   A  +F EM ER+ +SWT M+TGY K+   + A E  + M 
Sbjct: 252 DMYMKC---------GLTVEADALFREMLERNVVSWTVMITGYGKHGIGNKAVELFNEMQ 302

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
           EN                       I+ D  TY +V+SAC++SGL + GK+  + L   +
Sbjct: 303 EN----------------------GIEPDSVTYLAVLSACSHSGLIKEGKKYFSILCSNQ 340

Query: 313 A-KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSAYVSAGLIDE 370
             KP  E        +V L  + G++ EA+++  +MP +  V  W  +LS     G ++ 
Sbjct: 341 KIKPKVEHYA----CMVDLLGRGGRLKEAKNLIEKMPLKPNVGIWQTLLSVCRMHGDVEM 396

Query: 371 AKSLFEAM--RERNLLSWTVMISGL-AQNGYGEEGLKLFSQMRLEGFKP 416
            K + E +  RE N  +  VM+S + A  GY +E  K+   ++ +G K 
Sbjct: 397 GKQVGEILLRREGNNPANYVMVSNMYAHAGYWKESEKIRETLKRKGLKK 445



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 91/175 (52%), Gaps = 6/175 (3%)

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           +  C+    L+ G+Q+H  +   G+D     GN++I MY++CG+V  A  VFNT+P  + 
Sbjct: 11  LNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFNTLPVRNV 70

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
           +SWNAMIA      NG  A+ L+ +M ++G +PD  T+ + L AC+ A    EG +    
Sbjct: 71  ISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGEGMQIHAA 130

Query: 545 M--HG-PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           +  HG PY            +DL  +  + +EA+ V D +  K S   W  L+ G
Sbjct: 131 LIRHGFPYLAQSAVA--GALVDLYVKCRRMAEARKVFDRIEEK-SVMSWSTLILG 182


>gi|242055215|ref|XP_002456753.1| hypothetical protein SORBIDRAFT_03g041980 [Sorghum bicolor]
 gi|241928728|gb|EES01873.1| hypothetical protein SORBIDRAFT_03g041980 [Sorghum bicolor]
          Length = 521

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/516 (40%), Positives = 314/516 (60%), Gaps = 14/516 (2%)

Query: 284 TYTSVISACANSGLFR----LGKQVHAYLLRTEAKPTPEFSLP--VNNALVTLYWKCGKV 337
            Y + IS CA +GL+     L +++    LR +     E++LP  +N+A +         
Sbjct: 11  AYNAAISRCARAGLYARALALFREMRGRGLRAD-----EYTLPPLLNSAALLRGPPGAVA 65

Query: 338 NEARDIFNQMPERDLVSWNAILSAYV---SAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
                +        L   NA++ AY     AG    A+++F+ M  R++++WT +++GLA
Sbjct: 66  ALHALLLRAGLAHHLHVANALVDAYARLPCAGGAATARAVFDEMPRRDVVTWTSLLTGLA 125

Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
           + G     ++ +  M   G +  ++A A  ++SCAG  AL+ GR +HA  VH G     S
Sbjct: 126 RAGAHAAAVRAYHGMVAAGVQTDEFAVAAVLSSCAGSTALDVGRSVHAAAVHLGLCPFRS 185

Query: 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
            GN+L++MYA+ G +  A  VF+ MP   +++W A+I    Q+G G R++E+Y  M++ G
Sbjct: 186 VGNSLVSMYAKTGALHDARAVFDAMPARCTITWTALIVGYAQNGRGRRSLEVYTDMVRSG 245

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
             PD +TF+ +L AC+HAGLV  GR +F +M   YGI PG DHYA  +DLL RAG+  EA
Sbjct: 246 CRPDYVTFIGLLFACSHAGLVDAGRDHFRSMAVDYGIAPGPDHYACMVDLLGRAGRLDEA 305

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL 634
            D+++    +  A +W++LL  CR+H N +L  +AAE +++L P  A  YV+LSN+Y+  
Sbjct: 306 MDLLNRSSTELDATVWKSLLGACRVHRNAELAERAAEMVWRLDPTDAVPYVMLSNLYSRA 365

Query: 635 GRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEM 694
            RW D AR+R LM+ RG+ KEPGCSW+ V+   H+F V+D  HP A  +Y+ +E++   +
Sbjct: 366 RRWGDVARIRALMKARGITKEPGCSWVGVNGVTHLFHVEDRGHPRAAEIYRKVEEMTERI 425

Query: 695 RKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCH 754
           R  GYVPDT + L D   + +E  L+ HSE+LAVAFGL+ +P  A +RV KNLR+CGDCH
Sbjct: 426 RAEGYVPDTDWALQDEAPEGRERGLAYHSERLAVAFGLLAVPAAAPIRVFKNLRVCGDCH 485

Query: 755 NAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            A K ++K  GR I++RD   FHH +DG+CSCGDYW
Sbjct: 486 TAIKMVAKAYGRVIILRDANCFHHMKDGECSCGDYW 521



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 175/409 (42%), Gaps = 68/409 (16%)

Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMH 173
            V YNA I+  +       A+ LFR+MR   ++ D +T   +L++ AL+         +H
Sbjct: 9   VVAYNAAISRCARAGLYARALALFREMRGRGLRADEYTLPPLLNSAALLRGPPGAVAALH 68

Query: 174 CTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMT 233
             ++++G      V NAL+  Y +   +   ++      AR VFDEMP RD ++WT+++T
Sbjct: 69  ALLLRAGLAHHLHVANALVDAYARLPCAGGAAT------ARAVFDEMPRRDVVTWTSLLT 122

Query: 234 GYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACA 293
           G  +     AA     G                      M+   +Q DEF   +V+S+CA
Sbjct: 123 GLARAGAHAAAVRAYHG----------------------MVAAGVQTDEFAVAAVLSSCA 160

Query: 294 NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV 353
            S    +G+ VHA  +     P       V N+LV++Y K G +++AR +F+ MP R  +
Sbjct: 161 GSTALDVGRSVHAAAVHLGLCPFRS----VGNSLVSMYAKTGALHDARAVFDAMPARCTI 216

Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
           +W                               T +I G AQNG G   L++++ M   G
Sbjct: 217 TW-------------------------------TALIVGYAQNGRGRRSLEVYTDMVRSG 245

Query: 414 FKPCDYAFAGAITSCAGLGALENGR-QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
            +P    F G + +C+  G ++ GR    +  V  G          ++ +  R G ++ A
Sbjct: 246 CRPDYVTFIGLLFACSHAGLVDAGRDHFRSMAVDYGIAPGPDHYACMVDLLGRAGRLDEA 305

Query: 473 NCVFN-TMPNVDSVSWNAMIAALGQHGN---GARAIELYEQMLKEGILP 517
             + N +   +D+  W +++ A   H N     RA E+  ++     +P
Sbjct: 306 MDLLNRSSTELDATVWKSLLGACRVHRNAELAERAAEMVWRLDPTDAVP 354



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 120/281 (42%), Gaps = 43/281 (15%)

Query: 86  TLIAAYS---ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR 142
            L+ AY+    +     AR +F++ P   RD V + +++T  +      AA+  +  M  
Sbjct: 85  ALVDAYARLPCAGGAATARAVFDEMP--RRDVVTWTSLLTGLARAGAHAAAVRAYHGMVA 142

Query: 143 DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSP 202
             V+ D F   +VLS+ A     +     +H   V  G   F SV N+L+S+Y K     
Sbjct: 143 AGVQTDEFAVAAVLSSCAGSTALDVG-RSVHAAAVHLGLCPFRSVGNSLVSMYAKT---- 197

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL 262
                  +  AR VFD MP R  ++WT ++ GY +N      R  L+  ++         
Sbjct: 198 -----GALHDARAVFDAMPARCTITWTALIVGYAQNGR---GRRSLEVYTD--------- 240

Query: 263 ISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGK-QVHAYLLRTEAKPTPEFSL 321
                     M+    + D  T+  ++ AC+++GL   G+    +  +     P P+   
Sbjct: 241 ----------MVRSGCRPDYVTFIGLLFACSHAGLVDAGRDHFRSMAVDYGIAPGPDH-- 288

Query: 322 PVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
                +V L  + G+++EA D+ N+   E D   W ++L A
Sbjct: 289 --YACMVDLLGRAGRLDEAMDLLNRSSTELDATVWKSLLGA 327



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 33/126 (26%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           + RSVHA  +  G  P   + N L+ +Y K+  L  AR +FD +P               
Sbjct: 167 VGRSVHAAAVHLGLCPFRSVGNSLVSMYAKTGALHDARAVFDAMPA-------------- 212

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                              R T+ + A+I  Y+ N  G  ++E++ DM R   +PD  TF
Sbjct: 213 -------------------RCTITWTALIVGYAQNGRGRRSLEVYTDMVRSGCRPDYVTF 253

Query: 153 TSVLSA 158
             +L A
Sbjct: 254 IGLLFA 259


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/622 (37%), Positives = 335/622 (53%), Gaps = 67/622 (10%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS-WT 229
           Q+H  ++ SG GL   +   L+ +Y  C          L+  ARR+FDEMP +  +  W 
Sbjct: 84  QLHARLLVSGLGLDAVLATRLVDLYASC---------GLVSVARRLFDEMPNQGNVFLWN 134

Query: 230 TMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVI 289
            ++  Y ++   +AA E                     +RE+ +    ++ D FTY  V+
Sbjct: 135 VLIRAYARDGPREAAIEL--------------------YREM-LACGSMEPDNFTYPPVL 173

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
            ACA       G++VH  ++RT                    W       A D+F     
Sbjct: 174 KACAALLDLGAGREVHDRVMRTS-------------------W-------AADVF----- 202

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
                   ++  Y   G +DEA ++F++   R+ + W  MI+   QNG   E L L   M
Sbjct: 203 ----VCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPAEALALCRNM 258

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
             EG  P       AI++ A  GAL  GR+LH      G+ S      +L+ MYA+ G V
Sbjct: 259 AAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWV 318

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG-ILPDRITFLTVLSA 528
             A  +F+ + + + +SWNAMI   G HG+   A EL+ +M  E  ++PD ITF+ VLSA
Sbjct: 319 TVARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNEAQVMPDHITFVGVLSA 378

Query: 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
           CNH G+V+E +  F+ M   Y I P   HY   +D+L  +G+F EA DVI  +  KP + 
Sbjct: 379 CNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSG 438

Query: 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648
           IW ALL GC+IH N++L   A  +L +L P  AG YVLLSN+YA  G+W++AARVRKLM 
Sbjct: 439 IWGALLNGCKIHKNVELAELALHKLIELEPEDAGNYVLLSNIYAQSGKWEEAARVRKLMT 498

Query: 649 DRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLH 708
           +RG+KK   CSWIE+  K H FLV D +HP +  +Y+ LE+L   + + GYVPDT  V H
Sbjct: 499 NRGLKKIIACSWIELKGKSHGFLVGDASHPRSDEIYEELERLEGLISQTGYVPDTTSVFH 558

Query: 709 DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREI 768
           ++E D+K   +  HSE+LA+AFGL+  P G  + V KNLR+C DCH   K +S++  REI
Sbjct: 559 NVEDDEKRNMVRGHSERLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVIKLISQIEQREI 618

Query: 769 VVRDGKRFHHFRDGKCSCGDYW 790
           ++RD  R+HHF +G+CSC D+W
Sbjct: 619 IIRDVNRYHHFVNGECSCKDHW 640



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 178/373 (47%), Gaps = 51/373 (13%)

Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
            Y +++ +C  S   R G+Q+HA LL +           +   LV LY  CG V+ AR +
Sbjct: 65  NYATILRSCVLSRAVRPGRQLHARLLVSGLG----LDAVLATRLVDLYASCGLVSVARRL 120

Query: 344 FNQMPER-DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG 402
           F++MP + ++  WN ++ AY                               A++G  E  
Sbjct: 121 FDEMPNQGNVFLWNVLIRAY-------------------------------ARDGPREAA 149

Query: 403 LKLFSQMRLEG-FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALIT 461
           ++L+ +M   G  +P ++ +   + +CA L  L  GR++H +++ + + + +     LI 
Sbjct: 150 IELYREMLACGSMEPDNFTYPPVLKACAALLDLGAGREVHDRVMRTSWAADVFVCAGLID 209

Query: 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           MYA+CG V+ A  VF++    D+V WN+MIAA GQ+G  A A+ L   M  EGI P  +T
Sbjct: 210 MYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPAEALALCRNMAAEGIAPTIVT 269

Query: 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG----EDHYARFIDLLCRAGKFSEAKDV 577
            ++ +SA   AG +  GR     +HG YG   G    +      +D+  ++G  + A+ +
Sbjct: 270 LVSAISAAADAGALPRGRE----LHG-YGWRRGFGSQDKLKTSLLDMYAKSGWVTVARVL 324

Query: 578 IDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL---FQLMPHHAGTYVLLSNMYANL 634
            D L F      W A++ G  +HG+ D   +   ++    Q+MP H  T+V + +   + 
Sbjct: 325 FDQL-FHRELISWNAMICGFGMHGHADHACELFRRMRNEAQVMPDHI-TFVGVLSACNHG 382

Query: 635 GRWDDAARVRKLM 647
           G   +A  V  LM
Sbjct: 383 GMVQEAKEVFDLM 395



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 95/403 (23%), Positives = 158/403 (39%), Gaps = 78/403 (19%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF 73
           N YA+ L+ C     +     R +HA ++ SG      +  RL+D+Y     +  AR LF
Sbjct: 64  NNYATILRSCVLSRAVRP--GRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLF 121

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
           DE+P                                   +   +N +I AY+ +    AA
Sbjct: 122 DEMPNQG--------------------------------NVFLWNVLIRAYARDGPREAA 149

Query: 134 IELFRDMRR-DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           IEL+R+M     ++PDNFT+  VL A A +++      ++H  V+++       V   LI
Sbjct: 150 IELYREMLACGSMEPDNFTYPPVLKACAALLDLGAG-REVHDRVMRTSWAADVFVCAGLI 208

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM- 251
            +Y KC           +  A  VFD    RD + W +M+    +N     A      M 
Sbjct: 209 DMYAKC---------GCVDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPAEALALCRNMA 259

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
           +E +      L+S          + R                       G+++H Y  R 
Sbjct: 260 AEGIAPTIVTLVSAISAAADAGALPR-----------------------GRELHGYGWRR 296

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
                 +       +L+ +Y K G V  AR +F+Q+  R+L+SWNA++  +   G  D A
Sbjct: 297 GFGSQDKL----KTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHA 352

Query: 372 KSLFEAMRER-----NLLSWTVMISGLAQNGYGEEGLKLFSQM 409
             LF  MR       + +++  ++S     G  +E  ++F  M
Sbjct: 353 CELFRRMRNEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLM 395



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 94/198 (47%), Gaps = 15/198 (7%)

Query: 414 FKPCDYAF-----AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468
             PC Y +     A  + SC    A+  GRQLHA+L+ SG          L+ +YA CG+
Sbjct: 54  LSPCPYPYNHNNYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGL 113

Query: 469 VEAANCVFNTMPNVDSVS-WNAMIAALGQHGNGARAIELYEQMLKEGIL-PDRITFLTVL 526
           V  A  +F+ MPN  +V  WN +I A  + G    AIELY +ML  G + PD  T+  VL
Sbjct: 114 VSVARRLFDEMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVL 173

Query: 527 SACNHAGLVKEGRRYFE-TMHGPYGIPPGEDHY--ARFIDLLCRAGKFSEAKDVIDSLPF 583
            AC     +  GR   +  M   +      D +  A  ID+  + G   EA  V DS   
Sbjct: 174 KACAALLDLGAGREVHDRVMRTSW----AADVFVCAGLIDMYAKCGCVDEAWAVFDSTTV 229

Query: 584 KPSAPIWEALLAGCRIHG 601
           +  A +W +++A C  +G
Sbjct: 230 R-DAVVWNSMIAACGQNG 246



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 141/341 (41%), Gaps = 42/341 (12%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+     LI  Y+    V  A  +F+ T   +RD V +N+MI A   N     A+ L R+
Sbjct: 200 DVFVCAGLIDMYAKCGCVDEAWAVFDST--TVRDAVVWNSMIAACGQNGRPAEALALCRN 257

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M  + + P   T  S +SA A      +   ++H    + G G    +  +L+ +Y K  
Sbjct: 258 MAAEGIAPTIVTLVSAISAAADAGALPRG-RELHGYGWRRGFGSQDKLKTSLLDMYAK-- 314

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
            S +V+       AR +FD++  R+ +SW  M+ G+  + + D A E    M        
Sbjct: 315 -SGWVT------VARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNEA---- 363

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPE 318
                            ++  D  T+  V+SAC + G+ +  K+V   ++   + KP  +
Sbjct: 364 -----------------QVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQ 406

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA---YVSAGLIDEAKSL 374
                   LV +    G+  EA D+   M  + D   W A+L+    + +  L + A   
Sbjct: 407 HY----TCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALHK 462

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
              +   +  ++ ++ +  AQ+G  EE  ++   M   G K
Sbjct: 463 LIELEPEDAGNYVLLSNIYAQSGKWEEAARVRKLMTNRGLK 503



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 38/163 (23%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R +H +    GF  ++ +   L+D+Y KS  +  AR LFD++   ++++          
Sbjct: 286 GRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHRELIS---------- 335

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPDNFTF 152
                                  +NAMI  +  + +   A ELFR MR +  V PD+ TF
Sbjct: 336 -----------------------WNAMICGFGMHGHADHACELFRRMRNEAQVMPDHITF 372

Query: 153 TSVLSAL--ALIVEEEKQCMQMHCTV--VKSGTGLFTSVLNAL 191
             VLSA     +V+E K+   +  TV  +K     +T +++ L
Sbjct: 373 VGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVL 415


>gi|358345892|ref|XP_003637008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502943|gb|AES84146.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 244/709 (34%), Positives = 374/709 (52%), Gaps = 99/709 (13%)

Query: 104 FNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPDNFTFTSVLSALALI 162
           + ++PL    +V +N++++ YSH    + A+ LFR+M     + PD     ++L     +
Sbjct: 16  YTRSPLI---SVSWNSIVSVYSHCFVPNDAVFLFREMTVGYGILPDTVGVVNILPVSGFL 72

Query: 163 VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE 222
                              G F  V NAL+ +Y KC           M  A +VF+ M  
Sbjct: 73  -------------------GFF--VGNALVDMYAKC---------GKMEDASKVFERMRF 102

Query: 223 RDELSWTTMMTGYVKNDYLDAAREFLDGMSENV----GVAWNALISGYVHREL------- 271
           +D ++W  M+TGY +N   + A      M E       V W+++ISGY  R         
Sbjct: 103 KDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDV 162

Query: 272 --KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY----LLRTEAKPTPEFSLPVNN 325
             +M   R + +  T  S++SACA+ G    GK+ H Y    +L+ E     +  L V N
Sbjct: 163 FRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTD-DLAVIN 221

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
           AL+ +Y KC  +  AR +F+++  +D                             R++++
Sbjct: 222 ALIDMYAKCKSLEVARAMFDEICPKD-----------------------------RDVVT 252

Query: 386 WTVMISGLAQNGYGEEGLKLFSQM-RLEG-FKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
           WTVMI G AQ+G     L+LFS+M +++    P D+  +  + +CA L AL+ G+Q+HA 
Sbjct: 253 WTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAY 312

Query: 444 LVH-SGYDSS-LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGA 501
           ++  S  DS  L   N LI MY++ G V+ A  VF++M   ++VSW +++   G HG   
Sbjct: 313 VLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHG--- 369

Query: 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF 561
                        ++ D ITFL VL AC+H+G+V  G   F  M   + + PG +HYA  
Sbjct: 370 -----------AALVLDGITFLVVLYACSHSGMVDRGIDLFYRMSKDFVVDPGVEHYACM 418

Query: 562 IDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621
            DL  RAG+  EA  +I+ +  +P+  +W ALL+ CR H N +L   AA++L +L   + 
Sbjct: 419 ADLFGRAGRLCEATRLINDMSMEPTPVVWIALLSACRTHSNEELAEFAAKKLLELKADND 478

Query: 622 GTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQ 681
           GTY LLSN+YAN  RW D AR+R LM+  G+KK PG SW++    +  F V D  H ++Q
Sbjct: 479 GTYTLLSNIYANARRWKDVARIRYLMKRTGIKKRPGWSWVKGRKGMETFYVGDRTHLQSQ 538

Query: 682 AVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATV 741
            +Y+ L  L+  ++ +GYVP T F LHD++ ++K   L  HSEKLA+A+ ++ LP GA +
Sbjct: 539 KIYETLADLIKRIKAIGYVPQTNFSLHDVDDEEKGDQLLEHSEKLALAYAILTLPPGAPI 598

Query: 742 RVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           R+ KNLRICGD H+A  ++S +V  EI++RD  RFH F++G CSC  YW
Sbjct: 599 RITKNLRICGDFHSAITYISMIVEHEIILRDSSRFHQFKNGSCSCKGYW 647



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 177/371 (47%), Gaps = 61/371 (16%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMR- 112
           N L+D+Y K  K+  A  +F+ +   D+V    ++  YS +   + A  +F     KMR 
Sbjct: 78  NALVDMYAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFG----KMRE 133

Query: 113 -----DTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL----ALIV 163
                D V ++++I+ Y+    G  A+++FR M     +P+  T  S+LSA     AL+ 
Sbjct: 134 EKIELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLH 193

Query: 164 EEEKQCMQMHCTVVKSGTGLFT---SVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEM 220
            +E  C  +   ++K      T   +V+NALI +Y KC S         +  AR +FDE+
Sbjct: 194 GKETHCYSVK-FILKGEHNDDTDDLAVINALIDMYAKCKS---------LEVARAMFDEI 243

Query: 221 --PERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRI 278
              +RD ++WT M+ GY ++   + A +    M +      N ++               
Sbjct: 244 CPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFK----IDNCIVP-------------- 285

Query: 279 QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
             ++FT + V+ ACA     + GKQ+HAY+LR     +    L V N L+ +Y K G V+
Sbjct: 286 --NDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSD--VLFVANCLIDMYSKSGDVD 341

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGY 398
            A+ +F+ M +R+ VSW ++L+ Y   G          A    + +++ V++   + +G 
Sbjct: 342 TAQVVFDSMSKRNAVSWTSLLTGYGMHG----------AALVLDGITFLVVLYACSHSGM 391

Query: 399 GEEGLKLFSQM 409
            + G+ LF +M
Sbjct: 392 VDRGIDLFYRM 402



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 137/311 (44%), Gaps = 60/311 (19%)

Query: 58  DIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFY 117
           + +C S+K +      D+    D+     LI  Y+   ++++AR MF++   K RD V +
Sbjct: 196 ETHCYSVKFILKGEHNDD--TDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTW 253

Query: 118 NAMITAYSHNSNGHAAIELFRDMRRDD--VKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
             MI  Y+ + + + A++LF +M + D  + P++FT + VL A A +    K   Q+H  
Sbjct: 254 TVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLA-ALKFGKQIHAY 312

Query: 176 VVK----SGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
           V++        LF  V N LI +Y         S    +  A+ VFD M +R+ +SWT++
Sbjct: 313 VLRRSRIDSDVLF--VANCLIDMY---------SKSGDVDTAQVVFDSMSKRNAVSWTSL 361

Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
           +TGY                    G+   AL+                LD  T+  V+ A
Sbjct: 362 LTGY--------------------GMHGAALV----------------LDGITFLVVLYA 385

Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ER 350
           C++SG+   G  +     R       +  +     +  L+ + G++ EA  + N M  E 
Sbjct: 386 CSHSGMVDRGIDL---FYRMSKDFVVDPGVEHYACMADLFGRAGRLCEATRLINDMSMEP 442

Query: 351 DLVSWNAILSA 361
             V W A+LSA
Sbjct: 443 TPVVWIALLSA 453


>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 866

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 245/755 (32%), Positives = 380/755 (50%), Gaps = 103/755 (13%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R VH H++  G++    ++N LI +Y K   +  AR LFD +P+ DI++          
Sbjct: 215 GREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIIS---------- 264

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
                                  +NAMI+ Y  N  GH  ++LF  MR   V PD  T T
Sbjct: 265 -----------------------WNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLT 301

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           SV+SA  L+  + +    +H  V+ +G  +  SV N+L  +Y+   S            A
Sbjct: 302 SVISACELL-GDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGS---------WREA 351

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
            ++F  M  +D +SWTTM++GY  N   + A +    M ++                   
Sbjct: 352 EKLFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTYRMMDQD------------------- 392

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
               ++ DE T  +V+SACA  G    G ++H   ++          + V N L+ +Y K
Sbjct: 393 ---SVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISY----VIVANNLINMYSK 445

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
           C  +++A DIF+ +P ++++SW +I                               I+GL
Sbjct: 446 CKCIDKALDIFHNIPRKNVISWTSI-------------------------------IAGL 474

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL 453
             N    E L  F QM++   +P       A+ +CA +GAL  G+++HA ++ +G     
Sbjct: 475 RLNNRCFEALIFFRQMKMT-LQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDD 533

Query: 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE 513
              NAL+ MY RCG +  A   FN+    D  SWN ++    + G G+  +EL+++M+K 
Sbjct: 534 FLPNALLDMYVRCGRMNIAWNQFNSQKK-DVSSWNILLTGYSERGQGSVVVELFDRMVKA 592

Query: 514 GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE 573
            + PD ITF+++L  C  + +V++G  YF  M   YG+ P   HYA  +DLL RAG+  E
Sbjct: 593 RVRPDEITFISLLCGCGKSQMVRQGLMYFSKME-EYGVTPNLKHYACVVDLLGRAGELQE 651

Query: 574 AKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN 633
           A   I  +P  P   +W ALL  CRIH NIDLG  +A+++F+L     G Y+LL N+YA+
Sbjct: 652 AHKFIQKMPVTPDPAVWGALLNACRIHHNIDLGELSAQRIFELDKGSVGYYILLCNLYAD 711

Query: 634 LGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLE 693
            G+W + A+VR++M++ G+  + GCSW+EV  KVH FL DD  HP+ + +   L+    +
Sbjct: 712 CGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLDGFYEK 771

Query: 694 MRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDC 753
           M ++G    ++    D     ++     HSE+ A+AFGL+    G  + V KNL +C  C
Sbjct: 772 MSEVGLTTSSESSSMDETEISRDEIFCGHSERKAIAFGLINSVPGMPIWVTKNLNMCESC 831

Query: 754 HNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788
           H+  KF+SK V REI VRD + FHHF+DG+CSCGD
Sbjct: 832 HDTVKFISKTVRREISVRDSEHFHHFKDGECSCGD 866



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 121/431 (28%), Positives = 190/431 (44%), Gaps = 78/431 (18%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELF-RDMRRD 143
              +A +    N+  A  +F K  +  R+   +N ++  Y+       AI L+ R +   
Sbjct: 133 NAFLAMFVRFGNLVDAWYVFGK--MSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVG 190

Query: 144 DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
            VKPD +TF  VL     I +  +   ++H  VV+ G  L   V+NALI++YVKC     
Sbjct: 191 GVKPDVYTFPCVLRTCGGIPDLARG-REVHVHVVRYGYELDIDVVNALITMYVKCGD--- 246

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
                 + +AR +FD MP RD +SW  M++GY +N                         
Sbjct: 247 ------VKSARLLFDRMPRRDIISWNAMISGYFEN------------------------- 275

Query: 264 SGYVHRELKMLM----LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
            G  H  LK+      L +  D  T TSVISAC   G  RLG+ +HAY++ T        
Sbjct: 276 -GMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFA----V 330

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
            + V N+L  +Y   G   EA  +F++M  +D+VSW                        
Sbjct: 331 DISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSW------------------------ 366

Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
                  T MISG   N   E+ +  +  M  +  KP +   A  +++CA LG L+ G +
Sbjct: 367 -------TTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVE 419

Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
           LH   + +   S +   N LI MY++C  ++ A  +F+ +P  + +SW ++IA L  +  
Sbjct: 420 LHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNR 479

Query: 500 GARAIELYEQM 510
              A+  + QM
Sbjct: 480 CFEALIFFRQM 490



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 71/185 (38%), Positives = 109/185 (58%), Gaps = 1/185 (0%)

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR-LEGF 414
           NA L+ +V  G + +A  +F  M ERNL SW V++ G A+ GY +E + L+ +M  + G 
Sbjct: 133 NAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGV 192

Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
           KP  Y F   + +C G+  L  GR++H  +V  GY+  +   NALITMY +CG V++A  
Sbjct: 193 KPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARL 252

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
           +F+ MP  D +SWNAMI+   ++G G   ++L+  M    + PD +T  +V+SAC   G 
Sbjct: 253 LFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGD 312

Query: 535 VKEGR 539
            + GR
Sbjct: 313 RRLGR 317



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 122/478 (25%), Positives = 200/478 (41%), Gaps = 76/478 (15%)

Query: 127 NSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS 186
           N     A++L   M+   V  D   F + L  L       ++  +++   + S   L   
Sbjct: 72  NGKLEEAMKLLNSMQELRVAVDEDVFVA-LVRLCEWKRAHEEGSKVYSVALSSMNSLSVE 130

Query: 187 VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAARE 246
           + NA ++++V+  +         +  A  VF +M ER+  SW  ++ GY K  Y D A  
Sbjct: 131 LGNAFLAMFVRFGN---------LVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEA-- 179

Query: 247 FLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
                           I  Y HR L   +  ++ D +T+  V+  C        G++VH 
Sbjct: 180 ----------------ICLY-HRML--WVGGVKPDVYTFPCVLRTCGGIPDLARGREVHV 220

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366
           +++R       E  + V NAL+T+                               YV  G
Sbjct: 221 HVVRY----GYELDIDVVNALITM-------------------------------YVKCG 245

Query: 367 LIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAIT 426
            +  A+ LF+ M  R+++SW  MISG  +NG G EGLKLF  MR     P        I+
Sbjct: 246 DVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVIS 305

Query: 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
           +C  LG    GR +HA ++ +G+   +S  N+L  MY   G    A  +F+ M   D VS
Sbjct: 306 ACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVS 365

Query: 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG----RRYF 542
           W  MI+    +    +AI+ Y  M ++ + PD IT   VLSAC   G +  G    +   
Sbjct: 366 WTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAI 425

Query: 543 ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
           +     Y I          I++  +     +A D+  ++P + +   W +++AG R++
Sbjct: 426 KARLISYVIVANN-----LINMYSKCKCIDKALDIFHNIP-RKNVISWTSIIAGLRLN 477



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 115/468 (24%), Positives = 197/468 (42%), Gaps = 103/468 (22%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R +HA++I++GF     + N L  +Y  +     A  LF  +   DIV+ TT+I+ Y 
Sbjct: 315 LGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGYE 374

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                      +N  P K                      AI+ +R M +D VKPD  T 
Sbjct: 375 -----------YNFLPEK----------------------AIDTYRMMDQDSVKPDEITV 401

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
            +VLSA A + + +   +++H   +K+    +  V N LI++Y KC           +  
Sbjct: 402 AAVLSACATLGDLDTG-VELHKLAIKARLISYVIVANNLINMYSKC---------KCIDK 451

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A  +F  +P ++ +SWT+++ G   N+    A  F                     R++K
Sbjct: 452 ALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFF--------------------RQMK 491

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
           M +   Q +  T T+ ++ACA  G    GK++HA++LRT      +F LP  NAL+ +Y 
Sbjct: 492 MTL---QPNAITLTAALAACARIGALMCGKEIHAHVLRT-GVGLDDF-LP--NALLDMYV 544

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
           +CG++N A + FN   ++D+ SWN +L+ Y                              
Sbjct: 545 RCGRMNIAWNQFNS-QKKDVSSWNILLTGY------------------------------ 573

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
            ++ G G   ++LF +M     +P +  F   +  C     +  G    +++   G   +
Sbjct: 574 -SERGQGSVVVELFDRMVKARVRPDEITFISLLCGCGKSQMVRQGLMYFSKMEEYGVTPN 632

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
           L     ++ +  R G ++ A+     MP   D   W A++ A   H N
Sbjct: 633 LKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHN 680



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 88/208 (42%), Gaps = 3/208 (1%)

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
           + GL  NG  EE +KL + M+       +  F   +  C    A E G ++++  + S  
Sbjct: 66  LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMN 125

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
             S+  GNA + M+ R G +  A  VF  M   +  SWN ++    + G    AI LY +
Sbjct: 126 SLSVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHR 185

Query: 510 ML-KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568
           ML   G+ PD  TF  VL  C     +  GR         YG     D     I +  + 
Sbjct: 186 MLWVGGVKPDVYTFPCVLRTCGGIPDLARGRE-VHVHVVRYGYELDIDVVNALITMYVKC 244

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAG 596
           G    A+ + D +P +     W A+++G
Sbjct: 245 GDVKSARLLFDRMP-RRDIISWNAMISG 271


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  414 bits (1064), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/625 (35%), Positives = 358/625 (57%), Gaps = 66/625 (10%)

Query: 167 KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDEL 226
           K   Q+H  ++ +G G   S++  L+S +    +SP       +   RR+F  +P+ D  
Sbjct: 33  KPLQQIHARIIITGLGRTRSLITKLLS-FAYAAASP-------ISYTRRLFFSIPKPDTF 84

Query: 227 SWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYT 286
            + +++T                 ++        +L+    +R  +ML+  I    +T++
Sbjct: 85  LFHSLIT-----------------LTSKFSFPQESLL---CYR--RMLLANISSSNYTFS 122

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
           +VI + A+   F +G+ +H ++                       + CG      D + Q
Sbjct: 123 AVIKSSADLTAFSIGETIHCHV-----------------------YICGY---GLDAYVQ 156

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
                     A++S Y  +G +  A+ +F+ M E+ +++W  MISG  QNG+G+E ++LF
Sbjct: 157 A---------ALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELF 207

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
             M+  G KP    F   +++CA +GA+  G  +H  +  + +D ++  G AL+ MY+RC
Sbjct: 208 FLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRC 267

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
           G V  A  VF++M   + V+W AMI+  G HG+G++AIEL+ +M  +G  P+ +TF+ VL
Sbjct: 268 GNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVL 327

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVI-DSLPFKP 585
           SAC HAGLV EGR+ F TM   YG+ P  +H    +D+L RAG  +EA   I ++ P +P
Sbjct: 328 SACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEP 387

Query: 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645
           +  +W A+L  C++H N DLG++ AE L  + P + G YV+LSN+YA  GR D   ++R 
Sbjct: 388 APAVWTAMLGACKMHKNFDLGVEVAEHLLSIEPENPGHYVMLSNIYALAGRMDRVEKIRN 447

Query: 646 LMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKF 705
           +M    +KKE G S I+VD+KV++F + D +HP+   +Y YL++L+   R+ GY+P ++ 
Sbjct: 448 IMIRNRLKKEVGYSTIDVDHKVYLFSMGDKSHPKTNQIYLYLDELMSRCREAGYIPASES 507

Query: 706 VLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVG 765
           V+H++E +++EYAL  HSEKLA+AFGL+K   G  +R++KNLR+C DCH A K++S +  
Sbjct: 508 VMHEVEEEEREYALRYHSEKLAIAFGLLKTGSGVAIRIVKNLRMCEDCHTAIKYISIIAN 567

Query: 766 REIVVRDGKRFHHFRDGKCSCGDYW 790
           REI VRD  RFHHF+DG CSC DYW
Sbjct: 568 REINVRDRLRFHHFKDGSCSCQDYW 592



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 118/453 (26%), Positives = 211/453 (46%), Gaps = 72/453 (15%)

Query: 62  KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMI 121
           K L+ ++AR +   + +   +    L  AY+A+  +   R +F   P    DT  ++++I
Sbjct: 33  KPLQQIHARIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKP--DTFLFHSLI 90

Query: 122 TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGT 181
           T  S  S    ++  +R M   ++   N+TF++V+ + A +         +HC V   G 
Sbjct: 91  TLTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIG-ETIHCHVYICGY 149

Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
           GL   V  AL+S Y K        S  +M  AR+VFD+MPE+  ++W +M++GY +N + 
Sbjct: 150 GLDAYVQAALVSFYAK--------SGHVM-IARKVFDKMPEKTVVAWNSMISGYEQNGFG 200

Query: 242 DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
             A E    M +                      L ++ D  T+ S++SACA  G   LG
Sbjct: 201 KEAVELFFLMQD----------------------LGVKPDSSTFVSLLSACAQVGAIGLG 238

Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
             VH Y+    A+   + ++ +  AL+ +Y +CG V++AR++F+ M E+++V+W A++S 
Sbjct: 239 FWVHEYI----ARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISG 294

Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
           Y                                 +G+G + ++LF++M  +G +P +  F
Sbjct: 295 Y-------------------------------GMHGHGSQAIELFNEMSFDGPRPNNVTF 323

Query: 422 AGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCG-VVEAANCVFNTM 479
              +++CA  G ++ GRQ+   +    G   S+     ++ M  R G + EA   + NT 
Sbjct: 324 VAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTS 383

Query: 480 PNVDSVS-WNAMIAALGQHGNGARAIELYEQML 511
           P   + + W AM+ A   H N    +E+ E +L
Sbjct: 384 PKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 416



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 143/332 (43%), Gaps = 70/332 (21%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           S+  ++H H+   G+    ++   L+  Y KS  ++ AR +FD++P+  +VA  ++I   
Sbjct: 135 SIGETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMI--- 191

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                                         + Y  N  G  A+ELF  M+   VKPD+ T
Sbjct: 192 ------------------------------SGYEQNGFGKEAVELFFLMQDLGVKPDSST 221

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           F S+LSA A  V        +H  + ++   L   +  AL+++Y +C +         + 
Sbjct: 222 FVSLLSACAQ-VGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGN---------VS 271

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            AR VFD M E++ ++WT M++GY  + +   A E  + MS +                 
Sbjct: 272 KAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFD----------------- 314

Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
                  + +  T+ +V+SACA++GL   G+Q+    ++ E    P     V   +V + 
Sbjct: 315 -----GPRPNNVTFVAVLSACAHAGLVDEGRQIFT-TMKQEYGLVPSVEHQV--CMVDML 366

Query: 332 WKCGKVNEARD-IFNQMP-ERDLVSWNAILSA 361
            + G +NEA   I N  P E     W A+L A
Sbjct: 367 GRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGA 398


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  414 bits (1064), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/606 (37%), Positives = 345/606 (56%), Gaps = 29/606 (4%)

Query: 104 FNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA--- 160
           F   P K R        I      +  + A+    ++ R  ++ D+ T  S+L   A   
Sbjct: 14  FRTNPRKPRRRPCLVEAIVKLCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSR 73

Query: 161 LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEM 220
            + E ++  + +  T +K   G F S  N LI++Y KC              AR+VFD+M
Sbjct: 74  ALREGKRVHLHLKLTGLKR-PGTFLS--NHLINMYAKCGKEV---------EARKVFDKM 121

Query: 221 PERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI-----SGYVHRELKML- 274
             R+  SW  M++GY K   +  AR+  D M E   V+WN ++      GY    L+   
Sbjct: 122 SARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYS 181

Query: 275 ---MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
               L IQ + F++  V++ C       L +QVH  +L          S  V +A    Y
Sbjct: 182 EFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDA----Y 237

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            KCG + +AR +F++M  RD+++W  ++S Y   G +  A  LF  M E+N +SWT +IS
Sbjct: 238 VKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALIS 297

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
           G A+NG G + L+LF++M L   +P  + F+  + +CA + +L++G+Q+HA L+   +  
Sbjct: 298 GYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQP 357

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPN-VDSVSWNAMIAALGQHGNGARAIELYEQM 510
           +    +ALI MY++CG +     VF+ M N +D V WN +I+AL QHG G  AI++ + M
Sbjct: 358 NTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDM 417

Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
           ++ G  PD+ITF+ +L+AC+H+GLV++G  +FE+M   YGI P ++HYA  IDLL RAG 
Sbjct: 418 VRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGC 477

Query: 571 FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630
           F E  D ++ +P+KP   +W ALL  CRIHG+I+LG +AAE+L +L P  +  YVLLS++
Sbjct: 478 FEEVMDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAERLIELEPQSSTAYVLLSSI 537

Query: 631 YANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQL 690
           YA LGRW+   +VR+LM +R VKKE   SW+E++NKVH F V D++HP  + +Y  LEQL
Sbjct: 538 YAVLGRWESVQKVRQLMNERQVKKERAISWLEIENKVHSFSVSDSSHPLKEQIYSVLEQL 597

Query: 691 VLEMRK 696
             +M +
Sbjct: 598 AGQMEE 603



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 154/521 (29%), Positives = 247/521 (47%), Gaps = 69/521 (13%)

Query: 9   IRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFK-PREHIINRLIDIYCKSLKLV 67
           +R  +   AS LQ C     +     + VH H+  +G K P   + N LI++Y K  K V
Sbjct: 55  LRLDSRTLASLLQHCADSRALRE--GKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEV 112

Query: 68  YARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHN 127
            AR +FD++   ++ +   +++ Y+    +K AR++F+K P K  D V +N M+ A++  
Sbjct: 113 EARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEK--DVVSWNTMVIAHAQC 170

Query: 128 SNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSV 187
                A+  + + R+  ++ + F+F  VL+ + + ++E     Q+H  ++ +G      +
Sbjct: 171 GYWDEALRFYSEFRQLGIQCNGFSFAGVLT-VCVKLKEVGLTRQVHGQILVAGFLSNVVL 229

Query: 188 LNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREF 247
            ++++  YVKC          LMG AR++FDEM  RD L+WTTM++GY K   + +A E 
Sbjct: 230 SSSVLDAYVKC---------GLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANEL 280

Query: 248 LDGMSENVGVAWNALISGYV-----HREL----KMLMLRIQLDEFTYTSVISACANSGLF 298
              M E   V+W ALISGY      H+ L    KM++  ++ D+FT++S + ACA+    
Sbjct: 281 FVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASL 340

Query: 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNA 357
           + GKQ+HAYLLR   +P       V +AL+ +Y KCG +   R +F+ M  + D+V WN 
Sbjct: 341 KHGKQIHAYLLRINFQPNT----IVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNT 396

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417
           I+SA                               LAQ+G GEE +++   M   G KP 
Sbjct: 397 IISA-------------------------------LAQHGCGEEAIQMLDDMVRSGAKPD 425

Query: 418 DYAFAGAITSCAGLGALENGRQLHAQL-VHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
              F   + +C+  G ++ G      +    G   S      LI +  R G  E      
Sbjct: 426 KITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQL 485

Query: 477 NTMP-NVDSVSWNAMIAALGQHGN-------GARAIELYEQ 509
             MP   D   WNA++     HG+         R IEL  Q
Sbjct: 486 EKMPYKPDDRVWNALLGVCRIHGHIELGRKAAERLIELEPQ 526


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  414 bits (1064), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/581 (38%), Positives = 335/581 (57%), Gaps = 48/581 (8%)

Query: 222 ERDELSWTTMMTGYVKNDYL-DAAREFLDGMSENVGVAWNALISGYVH----RELKMLML 276
           E + +  T +++ Y K  +  DAA  FL  MS    VAW+A+++ Y      RE   L  
Sbjct: 108 EEESIVQTALVSLYGKLGHCTDAASVFLR-MSHRDVVAWSAMVAAYARNGHPREALGLFR 166

Query: 277 RIQLD-----EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
           ++ LD     + T  S + ACA+ G  R G  +H    R EA+   +  + V  ALV LY
Sbjct: 167 QMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQ---RVEAQGI-QSGVVVGTALVNLY 222

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMIS 391
            KCG+                               I+ A   F  + E+N+++W+ + +
Sbjct: 223 GKCGR-------------------------------IEAAAEAFGQIVEKNVVAWSAISA 251

Query: 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL--VHSGY 449
             A+N    + +++  +M LEG  P    F   + +CA + AL+ GR++H ++  +  G 
Sbjct: 252 AYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGL 311

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509
           +S +    AL+ MY++CG +  A  +F+ + ++D V WN++IA   QHG   +A+EL+E+
Sbjct: 312 ESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFER 371

Query: 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569
           M  EG+ P  ITF +VL AC+HAG++ +GR++F +  G +GI P  +H+   +DLL RAG
Sbjct: 372 MRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAG 431

Query: 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629
              +++D++  +PF+P    W A L  CR + N+D  I AAE LFQL P     YVLLSN
Sbjct: 432 WIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQLDPRKRAPYVLLSN 491

Query: 630 MYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQ 689
           MYA  GRW D AR+R+ M+     KE G SWIEV ++VH F+  D  HP    ++  L++
Sbjct: 492 MYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQR 551

Query: 690 LVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRI 749
           L   M+  GYVPDT+ VLHD++ + KE  +  HSEKLA+AF L+  P G+ +RV+KNLR+
Sbjct: 552 LTKLMKAAGYVPDTEMVLHDVKQEVKETMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRV 611

Query: 750 CGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           C DCH A KF+SK+V REIVVRD  RFH F++G CSCGDYW
Sbjct: 612 CNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 652



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 112/480 (23%), Positives = 200/480 (41%), Gaps = 77/480 (16%)

Query: 41  MISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDI----VARTTLIAAYSASDN 96
           M+  G  P E  I+  +     + ++   R++   I    I    + +T L++ Y    +
Sbjct: 67  MLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGH 126

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
              A  +F +  +  RD V ++AM+ AY+ N +   A+ LFR M  D V P+  T  S L
Sbjct: 127 CTDAASVFLR--MSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGL 184

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
            A A + +     + MH  V   G      V  AL+++Y KC           + AA   
Sbjct: 185 DACASLGDLRSGAL-MHQRVEAQGIQSGVVVGTALVNLYGKC---------GRIEAAAEA 234

Query: 217 FDEMPERDELSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVAWNALISGYVHRELKMLM 275
           F ++ E++ ++W+ +   Y +ND   DA R                     +HR   M +
Sbjct: 235 FGQIVEKNVVAWSAISAAYARNDRNRDAIR--------------------VLHR---MDL 271

Query: 276 LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG 335
             +  +  T+ SV+ ACA     + G+++H  +         E  + V  ALV +Y KCG
Sbjct: 272 EGLAPNSTTFVSVLDACAAIAALKQGRRIHERI--HVLGGGLESDVYVLTALVNMYSKCG 329

Query: 336 KVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQ 395
            +  A ++F+++   DLV WN++++     G  ++A  LFE                   
Sbjct: 330 NLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFE------------------- 370

Query: 396 NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLV--HSGYDSSL 453
                       +MRLEG +P    F   + +C+  G L+ GR+     +  H  +  + 
Sbjct: 371 ------------RMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAE 418

Query: 454 SAGNALITMYARCG-VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
             G  ++ +  R G +V++ + + +       V+W A + A   + N   AI   E + +
Sbjct: 419 HFG-CMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQ 477



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 117/240 (48%), Gaps = 2/240 (0%)

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           N ++  Y      D+A ++F  ++ +N+ SWT+M++  A+N   +     F  M L+G  
Sbjct: 14  NLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQGIN 73

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P +   +  +++C     +  GR +   ++ +G +       AL+++Y + G    A  V
Sbjct: 74  PGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAASV 133

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           F  M + D V+W+AM+AA  ++G+   A+ L+ QM  +G+ P+++T ++ L AC   G +
Sbjct: 134 FLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDL 193

Query: 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
           + G    + +    GI  G       ++L  + G+   A +    +  K +   W A+ A
Sbjct: 194 RSGALMHQRVEAQ-GIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEK-NVVAWSAISA 251



 Score = 42.7 bits (99), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 17/138 (12%)

Query: 4   KNADYIRTL-----------ANRYASQLQLCDPRNPITSSLARSVHA--HMISSGFKPRE 50
           +N D IR L           +  + S L  C     +     R +H   H++  G +   
Sbjct: 258 RNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQ--GRRIHERIHVLGGGLESDV 315

Query: 51  HIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLK 110
           +++  L+++Y K   L  A  +FD+I   D+V   +LIA  +     + A E+F +  L+
Sbjct: 316 YVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLE 375

Query: 111 -MRDTVF-YNAMITAYSH 126
            ++ T+  + +++ A SH
Sbjct: 376 GLQPTIITFTSVLFACSH 393


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 254/779 (32%), Positives = 386/779 (49%), Gaps = 130/779 (16%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L + VHA ++ +G   R    N L+ +Y K  ++  A+TLFD     D+V+         
Sbjct: 205 LGKQVHAFVLRNG-DWRTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVS--------- 254

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                   +N +I++ S N     A+     M +  V+P+  T 
Sbjct: 255 ------------------------WNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTL 290

Query: 153 TSVLSALALIVEEEKQC-MQMHCTVVKSGTGLFTSVLN-ALISVYVKCVSSPFVSSRSLM 210
            SVL A + +  E   C  ++H  V+ +   +  S +  AL+ +Y  C            
Sbjct: 291 ASVLPACSHL--EMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNC------------ 336

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
                   + PE+                     R   DGM       WNA+I+GYV  E
Sbjct: 337 --------KQPEK--------------------GRLVFDGMFRRTIAVWNAMIAGYVRNE 368

Query: 271 LK----------MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
                       +  L +  +  T +SV+ AC     F   + +H+ ++    K   E  
Sbjct: 369 FDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVV----KWGFEKD 424

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
             V NAL+ +Y + G++  AR IF  M  +D+VSWN +++ YV  G  D+A +L   M  
Sbjct: 425 KYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDM-- 482

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG---FKPCDYAFAGAITSCAGLGALENG 437
                         Q G  E  +  F           KP        +  CA L AL  G
Sbjct: 483 --------------QRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKG 528

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH 497
           +++HA  V       ++ G+AL+ MYA+CG +  +  VF  M   + ++WN +I A G H
Sbjct: 529 KEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMH 588

Query: 498 GNGARAIELYEQMLKEG-----ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552
           G G  A++L+ +M++EG     I P+ +T++ + ++ +H+G+V EG   F TM   +GI 
Sbjct: 589 GKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKAKHGIE 648

Query: 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK-PSAPIWEALLAGCRIHGNIDLGIQAAE 611
           P  DHYA  +DLL R+G+  EA ++I ++P        W +LL  C+IH N+++G  AA+
Sbjct: 649 PTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLLGACKIHQNLEIGEIAAK 708

Query: 612 QLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFL 671
            LF L P+     +      + LGR          M+++GV+KEPGCSWIE  ++VH FL
Sbjct: 709 NLFVLDPN----VLDYGTKQSMLGR---------KMKEKGVRKEPGCSWIEHGDEVHKFL 755

Query: 672 VDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFG 731
             D +HP+++ V++YLE L L M+K GYVPDT  VLH++  ++KE  L  HSE+LA+AFG
Sbjct: 756 AGDVSHPQSKEVHEYLETLSLRMKKEGYVPDTSCVLHNVGEEEKETMLCGHSERLAIAFG 815

Query: 732 LMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           L+    G T+RV KNLR+C DCH A KF+SK+V REI++RD +RFHHFR+G CSCGDYW
Sbjct: 816 LLNTSPGTTIRVAKNLRVCNDCHVATKFISKIVDREIILRDVRRFHHFRNGTCSCGDYW 874



 Score =  177 bits (450), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 150/486 (30%), Positives = 223/486 (45%), Gaps = 83/486 (17%)

Query: 127 NSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS 186
           +S  H AI  + +M    V PDNF F +VL A A I ++     Q+H  V K G  L T+
Sbjct: 63  SSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGI-QDLNLGKQLHAHVFKFGQALPTA 121

Query: 187 VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAARE 246
           V N+L+++Y KC           + AARRVFDE+  RD++SW +M+    + +  + A  
Sbjct: 122 VPNSLVNMYGKCGD---------IDAARRVFDEITNRDDVSWNSMINAACRFEEWELA-- 170

Query: 247 FLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACAN--SGLFRLGKQV 304
                               VH    ML+  +    FT  SV  AC+N  +GL  LGKQV
Sbjct: 171 --------------------VHLFRLMLLENVGPTSFTLVSVAHACSNLINGLL-LGKQV 209

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVS 364
           HA++LR       ++    NNALVT+Y K G+V EA+ +F+   ++DLVSWN I      
Sbjct: 210 HAFVLR-----NGDWRTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTI------ 258

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
                                    IS L+QN   EE L     M   G +P     A  
Sbjct: 259 -------------------------ISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASV 293

Query: 425 ITSCAGLGALENGRQLHA-QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
           + +C+ L  L  G+++HA  L+++    +   G AL+ MY  C   E    VF+ M    
Sbjct: 294 LPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRT 353

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKE-GILPDRITFLTVLSAC--NHAGLVKEGRR 540
              WNAMIA   ++     AIEL+ +M+ E G+ P+ +T  +VL AC    + L KEG  
Sbjct: 354 IAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEG-- 411

Query: 541 YFETMHGPYGIPPGEDHYAR--FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCR 598
              +    +G    +D Y +   +D+  R G+   A+ +  S+  K     W  ++ G  
Sbjct: 412 -IHSCVVKWGFE--KDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVS-WNTMITGYV 467

Query: 599 IHGNID 604
           + G  D
Sbjct: 468 VCGRHD 473



 Score =  145 bits (367), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 136/593 (22%), Positives = 238/593 (40%), Gaps = 128/593 (21%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           +L + +HAH+   G      + N L+++Y K   +  AR +FDEI               
Sbjct: 102 NLGKQLHAHVFKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITN------------- 148

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
                               RD V +N+MI A         A+ LFR M  ++V P +FT
Sbjct: 149 --------------------RDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSFT 188

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTG-LFTSVLNALISVYVKCVSSPFVSSRSLM 210
             SV  A + ++       Q+H  V+++G    FT+  NAL+++Y K            +
Sbjct: 189 LVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTFTN--NALVTMYAKL---------GRV 237

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
             A+ +FD   ++D +SW T+++   +ND  + A  +L  M ++ GV  N +        
Sbjct: 238 YEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQS-GVRPNGV-------- 288

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
                        T  SV+ AC++  +   GK++HA++L         F   V  ALV +
Sbjct: 289 -------------TLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSF---VGCALVDM 332

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y  C +  + R +F+ M  R +  WNA+++ YV                           
Sbjct: 333 YCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYV--------------------------- 365

Query: 391 SGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449
               +N +  E ++LF +M  E G  P     +  + +C    +  +   +H+ +V  G+
Sbjct: 366 ----RNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGF 421

Query: 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL--------------- 494
           +      NAL+ MY+R G +E A  +F +M   D VSWN MI                  
Sbjct: 422 EKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHD 481

Query: 495 ---GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR---YFETMHGP 548
              GQ  +     + YE      + P+ +T +TVL  C     + +G+    Y       
Sbjct: 482 MQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLS 541

Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
             +  G    +  +D+  + G  + ++ V + +  + +   W  L+    +HG
Sbjct: 542 KDVAVG----SALVDMYAKCGCLNLSRTVFEQMSVR-NVITWNVLIMAYGMHG 589


>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
 gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
          Length = 795

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 244/766 (31%), Positives = 394/766 (51%), Gaps = 115/766 (15%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            + VH+H++ +G++    ++N ++++Y K   +  A  +FD I  P++ + T +IAAY+ 
Sbjct: 136 GKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAYA- 194

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA--AIELFRDMRRDDVKPDNFT 151
                                              NGH    + L   M +  VKPD +T
Sbjct: 195 ----------------------------------QNGHCMEVLRLLSRMNQAGVKPDGYT 220

Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
           FT+VL A   +   E+  +    T+  +G     +V  ALI++Y KC           + 
Sbjct: 221 FTTVLGACTAVGALEEAKILHAATISSTGLDRDAAVGTALINLYGKC---------GALE 271

Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
            A  VF ++  +D +SW++M+  + +                          SG     +
Sbjct: 272 EAFGVFVQIDNKDIVSWSSMIAAFAQ--------------------------SGQAKSAI 305

Query: 272 KMLMLR----IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327
           ++LML     ++ +  T+ +V+ A  +   F+ GK++HA ++  +A  + +  L   +AL
Sbjct: 306 QLLMLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIV--QAGYSDDVCL--TSAL 361

Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWT 387
           V +Y                      +W          G ++ A+S+FE+ RER+++SW+
Sbjct: 362 VKMY---------------------CNW----------GWVETARSIFESSRERDVVSWS 390

Query: 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447
            MI+G +QN      L LF +M ++G +P    F  AI +CAG+GAL  G QLH ++   
Sbjct: 391 SMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRGTQLHERVRCL 450

Query: 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELY 507
           G D  +    AL+ +Y +CG +E A  VF  M   + ++W ++  A GQ+G+G+R+++L 
Sbjct: 451 GLDKDVPVATALVNLYGKCGRLEEAEAVFLGMKKKNLLTWTSIAMAYGQNGHGSRSLKLL 510

Query: 508 EQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR 567
             M  +G+ PD I F+ +L +CN+AG + +G  Y+  M   +GI P  +H    +D+L R
Sbjct: 511 HGMELQGMKPDGIVFVAILVSCNYAGQMSKGLHYYNLMTQDFGIAPAVEHCGCMVDILGR 570

Query: 568 AGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627
           AGK   A+ +I+++ F+ S   W  LL  C+ H +     +AAE++FQL P +A  YVLL
Sbjct: 571 AGKLEAAEQLINTMKFESSLA-WMMLLTACKAHNDTARAARAAEKIFQLEPKNATPYVLL 629

Query: 628 SNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLV--DDTAHPEAQAVYK 685
           S+++   G W+ A   R+ M  RGV++  G S IE+ ++VH F+   D   H     ++ 
Sbjct: 630 SSVFCAAGSWEAAEETRRRMDGRGVQRLLGRSSIEIGDRVHEFVAASDVLPHHLVGEIFA 689

Query: 686 YLEQLVLEMRKLGYVPDTKFV-LHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVL 744
            LE+L  EM+  GYVPD   V L D+E   KE A+  HSE LA+  G++  P G  +R+ 
Sbjct: 690 ALEKLGREMQGAGYVPDATAVRLRDVEEGGKENAVPYHSEMLALGLGIISTPAGTPLRIT 749

Query: 745 KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KNLR+C DCH A KF+SK+V R I VRDG+R HHF +G CSCGDYW
Sbjct: 750 KNLRMCSDCHIATKFVSKLVHRRISVRDGRRHHHFENGVCSCGDYW 795



 Score =  185 bits (470), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 136/549 (24%), Positives = 249/549 (45%), Gaps = 72/549 (13%)

Query: 72  LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
           L DE P   ++    +I  Y       LA ++F++  +K ++ V + ++I+A++   +  
Sbjct: 42  LQDERPDESLL-ENIVIQMYLRCGCTDLALDVFDR--MKDQNVVAWTSLISAFTFAGHFG 98

Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
            A+ LFR M    V PD  TFTS+L   +       +  ++H  ++++G      V+N +
Sbjct: 99  DAMVLFRKMLLSGVSPDRITFTSILLKWSGRERNLDEGKRVHSHIMQTGYEGDRMVMNLV 158

Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251
           + +Y KC           +  A  VFD + + +  SWT ++  Y +N +       L  M
Sbjct: 159 VEMYGKCGD---------VEQAGNVFDSIQDPNVFSWTIIIAAYAQNGHCMEVLRLLSRM 209

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
           ++                        ++ D +T+T+V+ AC   G     K +HA    T
Sbjct: 210 NQA----------------------GVKPDGYTFTTVLGACTAVGALEEAKILHAA---T 244

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
            +    +    V  AL+ LY KCG + EA  +F Q+  +D+VSW+++++A+         
Sbjct: 245 ISSTGLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAF--------- 295

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
                                 AQ+G  +  ++L   M LEG +P +  F   + +   L
Sbjct: 296 ----------------------AQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVLEAVTSL 333

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
            A + G+++HA++V +GY   +   +AL+ MY   G VE A  +F +    D VSW++MI
Sbjct: 334 KAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVETARSIFESSRERDVVSWSSMI 393

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
           A   Q+ + ARA+ L+ +M  +G+ P+ +TF++ + AC   G ++ G +  E +    G+
Sbjct: 394 AGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRGTQLHERVR-CLGL 452

Query: 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE--ALLAGCRIHGNIDLGIQA 609
                     ++L  + G+  EA+ V   +  K +   W   A+  G   HG+  L +  
Sbjct: 453 DKDVPVATALVNLYGKCGRLEEAEAVFLGMK-KKNLLTWTSIAMAYGQNGHGSRSLKLLH 511

Query: 610 AEQLFQLMP 618
             +L  + P
Sbjct: 512 GMELQGMKP 520



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 153/341 (44%), Gaps = 36/341 (10%)

Query: 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
           IQ +     ++++AC++      GK+VH  ++R                           
Sbjct: 6   IQAEISACAAILTACSDLRALPEGKRVHGLVMRESL------------------------ 41

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNG 397
                + ++ P+  L+  N ++  Y+  G  D A  +F+ M+++N+++WT +IS     G
Sbjct: 42  -----LQDERPDESLLE-NIVIQMYLRCGCTDLALDVFDRMKDQNVVAWTSLISAFTFAG 95

Query: 398 YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA-LENGRQLHAQLVHSGYDSSLSAG 456
           +  + + LF +M L G  P    F   +   +G    L+ G+++H+ ++ +GY+      
Sbjct: 96  HFGDAMVLFRKMLLSGVSPDRITFTSILLKWSGRERNLDEGKRVHSHIMQTGYEGDRMVM 155

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
           N ++ MY +CG VE A  VF+++ + +  SW  +IAA  Q+G+    + L  +M + G+ 
Sbjct: 156 NLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAYAQNGHCMEVLRLLSRMNQAGVK 215

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
           PD  TF TVL AC   G ++E +          G+          I+L  + G   EA  
Sbjct: 216 PDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDAAVGTALINLYGKCGALEEAFG 275

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           V   +  K     W +++A     G      ++A QL  LM
Sbjct: 276 VFVQIDNKDIVS-WSSMIAAFAQSGQ----AKSAIQLLMLM 311


>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
          Length = 870

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 254/756 (33%), Positives = 377/756 (49%), Gaps = 104/756 (13%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           + R VHAH++  GF     ++N L+ +Y K   +V AR +FD                  
Sbjct: 215 MGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDG----------------- 257

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                           + + D + +NAMI  +  N    A +ELF  M  ++V+P+  T 
Sbjct: 258 ----------------MAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTI 301

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
           TSV  A  ++  E     +MH   VK G  +  +  N+LI +Y         +S   MG 
Sbjct: 302 TSVTVASGML-SEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMY---------TSLGRMGD 351

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A ++F  M  +D +SWT M++GY KN + D A E                   Y   EL 
Sbjct: 352 AGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEV------------------YALMELH 393

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                +  D+ T  S ++ACA  G   +G ++H               L  N   +    
Sbjct: 394 ----NVSPDDVTIASALAACACLGRLDVGIKLH--------------ELAQNKGFI---- 431

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
                            R +V  NA+L  Y  +  ID+A  +F+ M E++++SW+ MI+G
Sbjct: 432 -----------------RYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAG 474

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
              N    E L  F  M L   KP    F  A+++CA  GAL +G+++HA ++  G  S 
Sbjct: 475 FCFNHRSFEALYYFRYM-LGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSE 533

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
               NAL+ +Y +CG    A   F+     D VSWN M++    HG G  A+ L+ QM++
Sbjct: 534 GYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVE 593

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
            G  PD +TF+ +L AC+ AG+V +G   F  M   + I P   HYA  +DLL R GK +
Sbjct: 594 MGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLT 653

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632
           EA ++I+ +P KP A +W ALL GCRIH +++LG  AA+ + +L P+    +VLL ++Y 
Sbjct: 654 EAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDLYT 713

Query: 633 NLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVL 692
           + G+W   ARVRK MR++G++++ GCSW+EV    H FL DD +HP+ + +   L  +  
Sbjct: 714 DAGKWAQVARVRKTMREKGLEQDNGCSWVEVKGVTHAFLTDDESHPQIKEINVVLHGIYE 773

Query: 693 EMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGD 752
            M+  G+ P     L D E  + +  L  HSE+LAVAFGL+    G T+ V KN   C  
Sbjct: 774 RMKACGFAPVES--LEDKEVSEDDI-LCGHSERLAVAFGLINTTPGTTISVTKNRYTCQS 830

Query: 753 CHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788
           CH  FK +S++V REI VRD K+ H F+DG CSCGD
Sbjct: 831 CHVIFKAISEIVRREITVRDTKQLHCFKDGDCSCGD 866



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 138/533 (25%), Positives = 224/533 (42%), Gaps = 98/533 (18%)

Query: 100 AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL 159
           A  +F K P   RD   +N M+  Y        A++L+  M    ++PD +TF  VL   
Sbjct: 150 AWRVFAKMP--ERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTC 207

Query: 160 ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDE 219
             I  + +   ++H  V++ G G    VLNAL+++Y KC           + AAR+VFD 
Sbjct: 208 GGI-PDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGD---------IVAARKVFDG 257

Query: 220 MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQ 279
           M   D +SW  M+ G+ +N   +A  E    M EN                       +Q
Sbjct: 258 MAVTDCISWNAMIAGHFENHECEAGLELFLTMLEN----------------------EVQ 295

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            +  T TSV  A          K++H + ++        F     N+L+ +Y   G++ +
Sbjct: 296 PNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFC----NSLIQMYTSLGRMGD 351

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
           A  IF++M  +D +SW A++S Y                                +NG+ 
Sbjct: 352 AGKIFSRMETKDAMSWTAMISGY-------------------------------EKNGFP 380

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
           ++ L++++ M L    P D   A A+ +CA LG L+ G +LH    + G+   +   NAL
Sbjct: 381 DKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANAL 440

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           + MYA+   ++ A  VF  M   D VSW++MIA    +     A+  +  ML   + P+ 
Sbjct: 441 LEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGH-VKPNS 499

Query: 520 ITFLTVLSACNHAGLVKEGRR----YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA- 574
           +TF+  LSAC   G ++ G+           G  G  P        +DL  + G+ S A 
Sbjct: 500 VTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNA-----LLDLYVKCGQTSYAW 554

Query: 575 --------KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
                   KDV+           W  +L+G   HG  D+ +    Q+ ++  H
Sbjct: 555 AQFSVHSEKDVVS----------WNIMLSGFVAHGLGDIALSLFNQMVEMGEH 597



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 154/312 (49%), Gaps = 13/312 (4%)

Query: 346 QMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKL 405
           + P   L   NA+LS  V  G I  A  +F  M ER++ SW VM+ G  + G+ EE L L
Sbjct: 125 EHPSFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDL 184

Query: 406 FSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465
           + +M   G +P  Y F   + +C G+     GR++HA ++  G+   +   NAL+TMYA+
Sbjct: 185 YYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAK 244

Query: 466 CGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTV 525
           CG + AA  VF+ M   D +SWNAMIA   ++      +EL+  ML+  + P+ +T  +V
Sbjct: 245 CGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSV 304

Query: 526 LSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF----IDLLCRAGKFSEAKDVIDSL 581
             A   +G++ E   + + MHG + +  G      F    I +    G+  +A  +   +
Sbjct: 305 TVA---SGMLSE-VGFAKEMHG-FAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRM 359

Query: 582 PFKPSAPIWEALLAGCRIHGNID--LGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639
             K  A  W A+++G   +G  D  L + A  +L  + P    T        A LGR D 
Sbjct: 360 ETK-DAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDV-TIASALAACACLGRLDV 417

Query: 640 AARVRKLMRDRG 651
             ++ +L +++G
Sbjct: 418 GIKLHELAQNKG 429



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 76/181 (41%), Gaps = 2/181 (1%)

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P + A+      C    A++ G +  A+         L  GNA+++M  R G +  A  V
Sbjct: 94  PDEGAYVALFRLCEWRRAVDAGMRACARADAEHPSFGLRLGNAMLSMLVRFGEIWHAWRV 153

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           F  MP  D  SWN M+   G+ G    A++LY +ML  G+ PD  TF  VL  C      
Sbjct: 154 FAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDW 213

Query: 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
           + GR     +   +G     D     + +  + G    A+ V D +        W A++A
Sbjct: 214 RMGREVHAHVL-RFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCIS-WNAMIA 271

Query: 596 G 596
           G
Sbjct: 272 G 272


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/557 (39%), Positives = 319/557 (57%), Gaps = 19/557 (3%)

Query: 247 FLDGMSENVGVAWNALISGYV-----HREL----KMLMLRIQLDEFTYTSVISACANSGL 297
           F +G        WN +I G        R L    +ML      + +T+  ++ AC+N   
Sbjct: 66  FFNGFDRPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSA 125

Query: 298 FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA 357
           F+   Q+HA++     K      +   N+L+  Y   G    A  +F+++ E D VSWN+
Sbjct: 126 FQETTQIHAHI----TKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNS 181

Query: 358 ILSAYVSAGLIDEAKSLFEAMRERN-LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
           ++  YV AG +D A +LF  M E+N  +SWT MISG  Q G  +E L+LF +M+     P
Sbjct: 182 VIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPP 241

Query: 417 CDYAFAGAITSCAGLGALENGRQLH--AQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
            + + A A+++C+ LGALE G+ +H  A    +  DS L     LI MYA+CG +E A  
Sbjct: 242 DNVSLASALSACSQLGALEQGKWIHSYANKTRTRIDSVLCC--VLIDMYAKCGEMEEALG 299

Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
           VF  M       W A+I+    HG G  AI  + +M   G+ P+ ITF  VL+AC++ GL
Sbjct: 300 VFKNMKTKSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGL 359

Query: 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
           V+EG+  F T+   Y + P  +HY   +DLL RAG  +EA   I  +P KP+A IW +LL
Sbjct: 360 VEEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLL 419

Query: 595 AGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKK 654
             C+IH NI+LG +  E L ++  +H G YV ++N++A   +WD AA  R+LMR++GV K
Sbjct: 420 KACQIHKNIELGEKIGEILIEMDSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVK 479

Query: 655 EPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESD- 713
            PGCS I ++   H FL  D +H E Q +      +  ++ + GYVP+ + +L D+  D 
Sbjct: 480 VPGCSAISLEGTTHEFLAGDRSHAEIQEIRTKWRFVRRKLEENGYVPELEDMLLDLVDDE 539

Query: 714 QKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDG 773
           +KE  +  HSEKLA+ +GLMK   G T+R++KNLR+C DCH     +SK+  R+IV+RD 
Sbjct: 540 EKEAIVHQHSEKLAITYGLMKTKPGTTIRIMKNLRVCKDCHKVMNLISKIYKRDIVMRDR 599

Query: 774 KRFHHFRDGKCSCGDYW 790
            RFHHF+DGKCSCGDYW
Sbjct: 600 TRFHHFKDGKCSCGDYW 616



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 115/460 (25%), Positives = 196/460 (42%), Gaps = 65/460 (14%)

Query: 64  LKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITA 123
           LK ++AR L   + Q D  A T  ++   +S     A ++F        DT  +N MI  
Sbjct: 27  LKQIHARMLKSGLLQ-DPYAMTKFLSFCLSSSFSSYAHDVFF-NGFDRPDTFLWNLMIRG 84

Query: 124 YSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGL 183
            S +     ++ L+  M       + +TF  +L A + +    ++  Q+H  + K G G 
Sbjct: 85  LSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNL-SAFQETTQIHAHITKFGYGH 143

Query: 184 FTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDA 243
               +N+LI+ Y   V+  F         A  +FD + E D +SW +++ GYVK   +D 
Sbjct: 144 DIYAVNSLINSYA--VTGNF-------KHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDM 194

Query: 244 AREFLDGMSE-NVGVAWNALISGYV----HRELKMLMLRIQ-----LDEFTYTSVISACA 293
           A      M E N  ++W  +ISGYV    ++E   L   +Q      D  +  S +SAC+
Sbjct: 195 ALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACS 254

Query: 294 NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV 353
             G    GK +H+Y  +T  +            L+ +Y KCG++ EA  +F  M  + + 
Sbjct: 255 QLGALEQGKWIHSYANKTRTRIDSVLCC----VLIDMYAKCGEMEEALGVFKNMKTKSVQ 310

Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
            W A++S Y                               A +G G E +  F +M+  G
Sbjct: 311 VWTALISGY-------------------------------AYHGLGREAISKFLEMQNMG 339

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD--SSLSAGNALITMYARCGVVEA 471
            KP    F   +T+C+  G +E G+ +    +   Y+   ++     ++ +  R G++  
Sbjct: 340 VKPNAITFTAVLTACSYTGLVEEGKSVF-NTIERDYNLKPTIEHYGCMVDLLGRAGLLNE 398

Query: 472 ANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQM 510
           AN     MP   ++V W +++ A   H N    IEL E++
Sbjct: 399 ANRFIQKMPLKPNAVIWGSLLKACQIHKN----IELGEKI 434



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 152/328 (46%), Gaps = 41/328 (12%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           +HAH+   G+    + +N LI+ Y  +    +A  LFD I +PD V+  ++I  Y  +  
Sbjct: 132 IHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGE 191

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
           + +A  +F K P K  + + +  MI+ Y        A++LF +M+  +V PDN +  S L
Sbjct: 192 MDMALTLFRKMPEK-NNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASAL 250

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
           SA + +   E Q   +H    K+ T + + +   LI +Y KC           M  A  V
Sbjct: 251 SACSQLGALE-QGKWIHSYANKTRTRIDSVLCCVLIDMYAKC---------GEMEEALGV 300

Query: 217 FDEMPERDELSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVAWNALISGYVHRELKMLM 275
           F  M  +    WT +++GY  +    +A  +FL+   +N+GV  NA+             
Sbjct: 301 FKNMKTKSVQVWTALISGYAYHGLGREAISKFLE--MQNMGVKPNAI------------- 345

Query: 276 LRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT-EAKPTPEFSLPVNNALVTLYWKC 334
                   T+T+V++AC+ +GL   GK V   + R    KPT E        +V L  + 
Sbjct: 346 --------TFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHY----GCMVDLLGRA 393

Query: 335 GKVNEARDIFNQMPER-DLVSWNAILSA 361
           G +NEA     +MP + + V W ++L A
Sbjct: 394 GLLNEANRFIQKMPLKPNAVIWGSLLKA 421


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/509 (41%), Positives = 299/509 (58%), Gaps = 39/509 (7%)

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           Y S++ +C      + GKQ+HA +          F   +   LV LY  C  ++ AR +F
Sbjct: 78  YASLLQSCIARKAIKPGKQLHAQVCLAGFG----FDTVIATKLVNLYCVCDSLSSARLLF 133

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           +++P+                                N+  W V+I G A NG  E  ++
Sbjct: 134 DRIPKH-------------------------------NIFLWNVLIRGYAWNGPYEAAVQ 162

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           L+ QM   G  P ++ F   + +CA L A+E+GR++H  +V +G++  +  G ALI MYA
Sbjct: 163 LYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYA 222

Query: 465 RCGVVEAANCVFNTMPNVDSV---SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521
           +CG V +A  VF+ +   D+V   SWNAMI     HG+   A++L+E+M +    PD IT
Sbjct: 223 KCGCVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGHATEALDLFEEMNRVA-KPDHIT 281

Query: 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581
           F+ VLSAC+H GL++EG  +FETM   Y I P   HY   +DLL  +G+  EA ++I  +
Sbjct: 282 FVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQM 341

Query: 582 PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAA 641
              P + +W ALL  C+IH N++LG  A E+L +L P  AG YV+LSN+YA  G+W+  A
Sbjct: 342 KVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVA 401

Query: 642 RVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVP 701
           ++RKLM DR +KK   CSWIEV NKVH FL  DT+HP +  +Y  LE++   M++ GY P
Sbjct: 402 KLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSP 461

Query: 702 DTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMS 761
            T  V HD+E D+K   + +HSE+LA+AFGL+  P G  + + KNLRIC DCH A KF+S
Sbjct: 462 STGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGTRLLITKNLRICEDCHVAIKFIS 521

Query: 762 KVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           K+  REI VRD  R+HHF+DG CSCGDYW
Sbjct: 522 KITEREITVRDVNRYHHFKDGVCSCGDYW 550



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 151/355 (42%), Gaps = 81/355 (22%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF 73
           + YAS LQ C  R  I     + +HA +  +GF     I  +L+++YC            
Sbjct: 76  SNYASLLQSCIARKAIKP--GKQLHAQVCLAGFGFDTVIATKLVNLYC------------ 121

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
                                D++  AR +F++ P    +   +N +I  Y+ N    AA
Sbjct: 122 -------------------VCDSLSSARLLFDRIP--KHNIFLWNVLIRGYAWNGPYEAA 160

Query: 134 IELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
           ++L+  M    + PDNFTF  VL A A +   E    ++H  VV++G      V  ALI 
Sbjct: 161 VQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHG-REIHEHVVQTGWEKDVFVGAALID 219

Query: 194 VYVKCVSSPFVSSRSLMGAARRVFDEMPERDE---LSWTTMMTGYVKNDYLDAAREFLDG 250
           +Y KC           +G+AR VFD++  RD    +SW  M+TGY  + +   A E LD 
Sbjct: 220 MYAKC---------GCVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGH---ATEALDL 267

Query: 251 MSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
             E   VA                    + D  T+  V+SAC++ GL   G      ++R
Sbjct: 268 FEEMNRVA--------------------KPDHITFVGVLSACSHGGLLEEGWMFFETMIR 307

Query: 311 T-EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM---PERDLVSWNAILSA 361
             +  PT +        +V L    G+++EA ++  QM   P+  +  W A+L++
Sbjct: 308 DYKIDPTVQHY----TCMVDLLGHSGRLDEAYNLIMQMKVLPDSGV--WGALLNS 356


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/539 (39%), Positives = 311/539 (57%), Gaps = 29/539 (5%)

Query: 281 DEFTYTSVISACANSGLFRLGKQVHAYLLR------------------------TEAKPT 316
           D FT+   + A ANS   R G Q+H+   R                        +  +  
Sbjct: 102 DSFTFAFALKAVANSRHLRPGIQLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVF 161

Query: 317 PEFSLP---VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKS 373
            E S P     NA++T  ++CG V  A+D+F  MP R+L SWN +L+ Y  AG +  A+ 
Sbjct: 162 DEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARR 221

Query: 374 LFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433
           +F  M  R+ +SW+ MI G A NG  +E    F ++  E  +  + +  G +++CA  GA
Sbjct: 222 VFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGA 281

Query: 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS-VSWNAMIA 492
            E G+ LH  +  +G+    S  NALI  Y++CG V  A  VF  MP   S VSW ++IA
Sbjct: 282 FEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIA 341

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552
            L  HG G  AI+L+ +M + G+ PD ITF+++L AC+H+GLV+EG   F  M   YGI 
Sbjct: 342 GLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIE 401

Query: 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
           P  +HY   +DL  RA +  +A + I  +P  P+A IW  LL  C IHGNI++      +
Sbjct: 402 PAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGACSIHGNIEMAELVKAR 461

Query: 613 LFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLV 672
           L ++ P ++G +VLLSN+YA  G+W D + +R+ M +  +KK PG S IE+D  ++ F+ 
Sbjct: 462 LAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKKTPGWSMIEIDKVIYGFVA 521

Query: 673 DDTAHPEAQAVYKYLEQLVLEMR-KLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFG 731
            +  +   +  ++ L +++L +R + GY P  + VLHD+E ++KE ++S HSEKLA AFG
Sbjct: 522 GEKPNEVTEEAHEKLREIMLRLRTEAGYAPQLRSVLHDIEEEEKEDSVSKHSEKLAAAFG 581

Query: 732 LMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           + KLP G  +R++KNLR+CGDCH   K +SKV   EI+VRD  RFH F+DG CSC DYW
Sbjct: 582 IAKLPKGRILRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKDGFCSCRDYW 640



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 148/546 (27%), Positives = 221/546 (40%), Gaps = 134/546 (24%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCK---SLKLVYARTL 72
           + S L  C    P      + +HA +  +G      +  +L+ ++C    S  L YA  L
Sbjct: 5   WVSLLSKCSSLKP-----TKQIHAQICKTGLHTDPLVFGKLL-LHCAITISDALHYALRL 58

Query: 73  FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
           F   P PD     TLI + S S           +TPL                  S+ H 
Sbjct: 59  FHHFPNPDTFMHNTLIRSLSLS-----------QTPL------------------SSLHP 89

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
            I+L    R+  + PD+FTF   L A+A      +  +Q+H    + G      V   LI
Sbjct: 90  FIQL---RRQPTLSPDSFTFAFALKAVA-NSRHLRPGIQLHSQAFRHGFDAHIFVGTTLI 145

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDE-------------------------------MP 221
           S+Y +C  S         G+ARRVFDE                               MP
Sbjct: 146 SMYAECGDS---------GSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGCMP 196

Query: 222 ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH-----------RE 270
            R+  SW  M+ GY K   L  AR     M     V+W+ +I G+ H           RE
Sbjct: 197 VRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRE 256

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
           L  L   I+ +E + T V+SACA +G F  GK +H ++     K    +   VNNAL+  
Sbjct: 257 L--LREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFV----EKAGFLYVGSVNNALIDT 310

Query: 331 YWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVM 389
           Y KCG V  AR +F  MP  R +VSW +I+     AGL                      
Sbjct: 311 YSKCGNVAMARLVFQNMPVARSIVSWTSII-----AGL---------------------- 343

Query: 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH-SG 448
               A +G GEE ++LF +M   G +P    F   + +C+  G +E G  L +++ +  G
Sbjct: 344 ----AMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYG 399

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELY 507
            + ++     ++ +Y R   ++ A      MP + +++ W  ++ A   HGN   A EL 
Sbjct: 400 IEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGACSIHGNIEMA-ELV 458

Query: 508 EQMLKE 513
           +  L E
Sbjct: 459 KARLAE 464



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 134/355 (37%), Gaps = 70/355 (19%)

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR--- 379
           +  A V+L  KC  +   + I  Q+ +  L +   +    +    I  + +L  A+R   
Sbjct: 1   MEEAWVSLLSKCSSLKPTKQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFH 60

Query: 380 ---ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSCAGLGALE 435
                +      +I  L+ +      L  F Q+R +    P  + FA A+ + A    L 
Sbjct: 61  HFPNPDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLR 120

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYA------------------------------- 464
            G QLH+Q    G+D+ +  G  LI+MYA                               
Sbjct: 121 PGIQLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAF 180

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG-------------------------- 498
           RCG VE A  VF  MP  +  SWN M+A   + G                          
Sbjct: 181 RCGDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVG 240

Query: 499 ---NGA--RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
              NG    A   + ++L+E I  + ++   VLSAC  AG  + G+     +     +  
Sbjct: 241 FAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYV 300

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
           G  + A  ID   + G  + A+ V  ++P   S   W +++AG  +HG  +  IQ
Sbjct: 301 GSVNNA-LIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQ 354


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/483 (40%), Positives = 294/483 (60%)

Query: 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367
           L R      P   + + N ++  Y    +V EAR +F+ MP RDLVSWN ++  Y   G 
Sbjct: 10  LARDAFDEAPLRDVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGE 69

Query: 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
           +  A+ +F+   +R+  SW+ MIS  A++   +E L+L+ +M      P        +++
Sbjct: 70  VGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSA 129

Query: 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
           C+ LGAL  G ++H  +  +  +  L  G ALI MYA+CG +E+A  VF+ MP  D  +W
Sbjct: 130 CSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTW 189

Query: 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
           ++MI  L  HG G  ++ L+ +M+ EG+ P+ +TF+ VL AC H GLV EG++YF +M+ 
Sbjct: 190 SSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNE 249

Query: 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
            +GI P  +HY   +DLL R+G   EA+ +I S+ F+P   IW ALL  CRIH N+++  
Sbjct: 250 VHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAE 309

Query: 608 QAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKV 667
           +A  +L  L P   G YVLLSN+YA    W+  A +RK +R   +++ PG S IE D K+
Sbjct: 310 EAMAKLRVLDPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKI 369

Query: 668 HVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLA 727
           H F+  D  HP ++ +Y+ LE+++  +++ GY P T  VL D++   KE +L+ HSEKLA
Sbjct: 370 HEFVSGDRLHPRSKEIYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQSKERSLAEHSEKLA 429

Query: 728 VAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCG 787
           +AF L+  P  +T+R+ KNLR C DCH+A K +S V  R+++VRD  RFHHF +G+CSC 
Sbjct: 430 IAFALLTTPARSTIRITKNLRACEDCHSAMKLISLVYDRKLIVRDRNRFHHFSEGQCSCK 489

Query: 788 DYW 790
           DYW
Sbjct: 490 DYW 492



 Score =  142 bits (358), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 157/335 (46%), Gaps = 61/335 (18%)

Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFL 248
           N +++ YV         SRS +  AR+VFD MP RD +SW TM+ GY     +  ARE  
Sbjct: 27  NVMLAAYV---------SRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIF 77

Query: 249 DGMSENVGVAWNALISGYV--HRELKMLMLRIQL-------DEFTYTSVISACANSGLFR 299
           DG  +    +W+++IS Y    R  + L L  ++       D  T  SV+SAC++ G   
Sbjct: 78  DGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALA 137

Query: 300 LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAIL 359
           +G +VH ++         E  L +  AL+ +Y KCG +  A+ +F++MPE+D+ +W++++
Sbjct: 138 VGAEVHRFVESNRI----ELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMI 193

Query: 360 SAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY 419
               + GL                               G E L LFS+M  EG KP   
Sbjct: 194 IGLANHGL-------------------------------GHESLSLFSKMISEGMKPNGV 222

Query: 420 AFAGAITSCAGLGALENGRQLHAQL--VHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477
            F G + +C  +G +  G++    +  VH G + ++     ++ +  R G VE A  +  
Sbjct: 223 TFVGVLIACTHVGLVSEGKKYFRSMNEVH-GIEPTVEHYGCMVDLLGRSGHVEEARQLIR 281

Query: 478 TMP-NVDSVSWNAMIAALGQHGNGARAIELYEQML 511
           +M    D++ W A++ A   H N    +E+ E+ +
Sbjct: 282 SMTFEPDTIIWRALLGACRIHKN----VEIAEEAM 312



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 147/316 (46%), Gaps = 48/316 (15%)

Query: 52  IINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKM 111
           + N ++  Y    ++  AR +FD +P  D+V+  T+I  Y+    V LARE+F+ T  + 
Sbjct: 25  LCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGT--ED 82

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL----ALIVEEEK 167
           RD   +++MI+AY+ +     A+EL+R+M    + PD  T  SV+SA     AL V  E 
Sbjct: 83  RDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAE- 141

Query: 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS 227
               +H  V  +   L   +  ALI +Y KC           + +A+RVFD MPE+D  +
Sbjct: 142 ----VHRFVESNRIELDLKLGTALIDMYAKCGD---------IESAQRVFDRMPEKDVQT 188

Query: 228 WTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTS 287
           W++M+ G   +                +G    +L S       KM+   ++ +  T+  
Sbjct: 189 WSSMIIGLANH---------------GLGHESLSLFS-------KMISEGMKPNGVTFVG 226

Query: 288 VISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
           V+ AC + GL   GK+    +      +PT E        +V L  + G V EAR +   
Sbjct: 227 VLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEH----YGCMVDLLGRSGHVEEARQLIRS 282

Query: 347 MP-ERDLVSWNAILSA 361
           M  E D + W A+L A
Sbjct: 283 MTFEPDTIIWRALLGA 298


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/572 (38%), Positives = 327/572 (57%), Gaps = 47/572 (8%)

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR-------ELKMLMLR--IQ 279
           T ++  YV+   LD AR  LDGM E   V+W A+ISGY          EL + MLR   +
Sbjct: 80  TRLIILYVRCGALDDARNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCK 139

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            +EFT  +V+++C      +  +QVH+ +++T      E  + V ++L+ +Y K G    
Sbjct: 140 ANEFTLATVLTSCPVHQSIQQVEQVHSLVVKTNF----ESHMFVGSSLLDMYGKSGN--- 192

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
                                       I EA+ +F+ + ER+ +S T +ISG AQ G  
Sbjct: 193 ----------------------------IQEARKVFDMLPERDTVSCTAIISGYAQLGLD 224

Query: 400 EEGLKLFSQMRLEGFKPCDY-AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
           +E L LF Q+   G + C+Y  F   +TS +GL +L  G+Q+H  ++       +   N+
Sbjct: 225 DEALDLFRQLYSSGMQ-CNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNS 283

Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           LI MY++CG +  +  VF+ MP   ++SWNAM+   G+HG G   ++L+  M +E + PD
Sbjct: 284 LIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEE-VKPD 342

Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVI 578
            +T L VLS C+H GLV EG   F+ +           HY   IDLL R+G+  +A D+I
Sbjct: 343 SVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLI 402

Query: 579 DSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWD 638
           + +PF+P+  IW +LL  CR+H N+ +G   A++L  + P +AG YV+LSN+YA  G W 
Sbjct: 403 EHMPFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGMWK 462

Query: 639 DAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLG 698
           D  RVRKLM +  V KEP  SWI +D  +H F   +  HP  + +   ++++ ++++  G
Sbjct: 463 DVFRVRKLMLENTVTKEPAKSWIILDKVIHTFHSSERFHPRKKDINAKIKEVYVDVKAAG 522

Query: 699 YVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFK 758
           +VPD   VLHD++ +QKE  L  HSEKLA+ FGLM  P G T++V+KNLRIC DCHN  K
Sbjct: 523 FVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIQVMKNLRICVDCHNFAK 582

Query: 759 FMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           F+SKV GREI +RD  RFH  +DG C+CGDYW
Sbjct: 583 FVSKVYGREISLRDKNRFHLLKDGACTCGDYW 614



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 181/394 (45%), Gaps = 74/394 (18%)

Query: 16  YASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE 75
           Y + +  C  R  +     R VHAHM+ + ++P  ++  RLI +Y +   L  AR + D 
Sbjct: 44  YDAAITACVERQALGE--GRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDG 101

Query: 76  IPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE 135
           +P+                                 R+ V + AMI+ YS +     A+E
Sbjct: 102 MPE---------------------------------RNVVSWTAMISGYSQSGRHAEALE 128

Query: 136 LFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195
           LF  M R   K + FT  +VL++   + +  +Q  Q+H  VVK+       V ++L+ +Y
Sbjct: 129 LFIRMLRAGCKANEFTLATVLTSCP-VHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMY 187

Query: 196 VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255
            K  +         +  AR+VFD +PERD +S T +++GY +    D A +    +    
Sbjct: 188 GKSGN---------IQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYS-- 236

Query: 256 GVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
                   SG            +Q +  T+T+++++ +       GKQVH  +LR E   
Sbjct: 237 --------SG------------MQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELP- 275

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
              F + + N+L+ +Y KCGK+  +R +F+ MP+R  +SWNA+L  Y   G+  E   LF
Sbjct: 276 ---FFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLF 332

Query: 376 EAMRER---NLLSWTVMISGLAQNGYGEEGLKLF 406
             M E    + ++   ++SG +  G  +EGL +F
Sbjct: 333 RTMTEEVKPDSVTLLAVLSGCSHGGLVDEGLDIF 366



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 97/197 (49%), Gaps = 8/197 (4%)

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
           +  AIT+C    AL  GRQ+HA +V + Y   +     LI +Y RCG ++ A  V + MP
Sbjct: 44  YDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMP 103

Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
             + VSW AMI+   Q G  A A+EL+ +ML+ G   +  T  TVL++C     V +  +
Sbjct: 104 ERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCP----VHQSIQ 159

Query: 541 YFETMHGPYGIPPGEDHY---ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
             E +H        E H    +  +D+  ++G   EA+ V D LP + +     A+++G 
Sbjct: 160 QVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSC-TAIISGY 218

Query: 598 RIHGNIDLGIQAAEQLF 614
              G  D  +    QL+
Sbjct: 219 AQLGLDDEALDLFRQLY 235


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/470 (43%), Positives = 289/470 (61%), Gaps = 2/470 (0%)

Query: 323 VNNALVTLYWK-CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER 381
           V+NAL+ ++    G + +   +       D  ++N +++AY  AG + +A++LF+ M  R
Sbjct: 113 VSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNTLITAYARAGRLADARALFDEMPAR 172

Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441
           N +SW+ M++G  Q G G E L++F++M+ E  +P D    G + +CA  GALE G+ +H
Sbjct: 173 NAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVH 232

Query: 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGA 501
             L   G   +L  G AL+ MY++CG V+ A  VF  M   + ++W  MI  L  HG G+
Sbjct: 233 GYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGS 292

Query: 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF 561
            A+ L+ QM   GI PD I F+ VL AC HAGLV +GR  F++M   YGI P  +HY   
Sbjct: 293 EAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCM 352

Query: 562 IDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621
           +DLL R G   EAK++I  +P +P A IW AL+AGCR H N++     A+    L P  +
Sbjct: 353 VDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFHKNVEFAEYVAKHWILLEPDKS 412

Query: 622 GTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQ 681
           G YVLLSN+YA  GR   A  +R LMR++GV K PGCS +EV+  +H F+V D +HP  +
Sbjct: 413 GAYVLLSNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEVNGVIHQFIVGDLSHPRIK 472

Query: 682 AVYKYLEQLVLEMR-KLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGAT 740
            +     ++   +R + GY+PD K VL D+E ++KE ALS HSEKLA+AF L+ +     
Sbjct: 473 DILSKWYEIDTRIRLEEGYIPDMKEVLLDIEEEEKEGALSRHSEKLAIAFALISISDNMP 532

Query: 741 VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +R+ KNLR+C DCH+  K +SKV GREIVVRD  RFH F++G CSC DYW
Sbjct: 533 IRIFKNLRVCHDCHHVTKLISKVYGREIVVRDRTRFHLFKEGTCSCKDYW 582



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 123/432 (28%), Positives = 190/432 (43%), Gaps = 63/432 (14%)

Query: 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALAL---IVEEEKQ 168
           R    ++A+I A S ++  H A+ L+  + R  + P   T  S+L ++AL   +      
Sbjct: 35  RSVELHDALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMALSPAVPGAAVL 94

Query: 169 CMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSW 228
            + +H   VK G   F  V NALI V+   + S       L+  A  V       D  ++
Sbjct: 95  ALTVHTHAVKLGLDRFVLVSNALIRVHAGFLGS-LADGLLLLRTAAAV-------DASTF 146

Query: 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVH----RELKMLMLRIQL---- 280
            T++T Y +   L  AR   D M     V+W+A+++GYV     RE   +  R+Q     
Sbjct: 147 NTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVR 206

Query: 281 -DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            D+     V++ACA  G    GK VH YL     K     +L    ALV +Y KCG+V  
Sbjct: 207 PDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIK----INLFFGTALVDMYSKCGEVQL 262

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
           A D+F +M  +++++W                               T MI GLA +G G
Sbjct: 263 AMDVFERMQYKNVLAW-------------------------------TTMIKGLAMHGRG 291

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNA 458
            E + LF+QM   G +P D AF G + +C   G ++ GR+L   +V   G    +     
Sbjct: 292 SEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGC 351

Query: 459 LITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL- 516
           ++ + AR G +  A  +   MP   D++ W A++A    H N    +E  E + K  IL 
Sbjct: 352 MVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFHKN----VEFAEYVAKHWILL 407

Query: 517 -PDRITFLTVLS 527
            PD+     +LS
Sbjct: 408 EPDKSGAYVLLS 419



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 145/340 (42%), Gaps = 41/340 (12%)

Query: 25  PRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSL-KLVYARTLFDEIPQPDIVA 83
           P  P  + LA +VH H +  G      + N LI ++   L  L     L       D   
Sbjct: 86  PAVPGAAVLALTVHTHAVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDAST 145

Query: 84  RTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD 143
             TLI AY+ +  +  AR +F++ P   R+ V ++AM+  Y    +G  A+ +F  M+ +
Sbjct: 146 FNTLITAYARAGRLADARALFDEMP--ARNAVSWSAMVNGYVQAGDGREALRIFARMQAE 203

Query: 144 DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
           DV+PD+     VL+A A     E Q   +H  +   G  +      AL+ +Y KC     
Sbjct: 204 DVRPDDTVLVGVLAACAQHGALE-QGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQL 262

Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
                    A  VF+ M  ++ L+WTTM+ G   +     A      M E+ G       
Sbjct: 263 ---------AMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQM-ESSG------- 305

Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLP 322
                         I+ D+  +  V+ AC ++GL   G+++   ++R    KP  E    
Sbjct: 306 --------------IRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEH--- 348

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
               +V L  + G + EA+++  +MP E D + W A+++ 
Sbjct: 349 -YGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAG 387


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/566 (39%), Positives = 320/566 (56%), Gaps = 44/566 (7%)

Query: 234 GYVKNDYLDAAREFLDGMSENVGVAWNALISGYV----HRE-LKML--MLR--IQLDEFT 284
           G +++   ++ R+  D M E   V+WN LI G      H+E L M+  M R     D FT
Sbjct: 113 GGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFT 172

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
            ++V+   A     + G  VH Y ++       +  + V ++L+ +Y  C +++ +  +F
Sbjct: 173 LSTVLPIFAECADIKRGMVVHGYAIKNGF----DNDVFVGSSLIDMYANCTQMDYSMKVF 228

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           +   + D     A+L                          W  M++G AQNG  EE L 
Sbjct: 229 DSFSDCD-----AVL--------------------------WNSMLAGYAQNGSVEEALG 257

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           +F +M   G +P    F+  I +   L  L  G+QLHA L+ + ++ ++   ++LI MY 
Sbjct: 258 IFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYC 317

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           +CG V+ A  VFN + + D VSW AMI     HG    A  L+E+M    + P+ ITFL 
Sbjct: 318 KCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLA 377

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584
           VL+AC+HAGLV  G +YF +M   YG  P  +H A   D L RAG   EA + I  +  K
Sbjct: 378 VLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIK 437

Query: 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVR 644
           P++ +W  LL  CR+H N  L  + A+++F+L P   G++V+LSNMY+  GRW++AA++R
Sbjct: 438 PTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASGRWNEAAQLR 497

Query: 645 KLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTK 704
           K MR +G+KKEP CSWIEV NK+HVF+  D +HP    +   L     +M + GYVP+ +
Sbjct: 498 KSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRIIDALNVYSEQMIRQGYVPNME 557

Query: 705 FVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVV 764
            VL D+E +QK   L  HSEKLA+ FG++  P G T+RV+KNLR+C DCH A KF+SK+V
Sbjct: 558 DVLQDIEEEQKREVLCGHSEKLAIVFGIISTPPGTTIRVMKNLRVCVDCHIATKFISKIV 617

Query: 765 GREIVVRDGKRFHHFRDGKCSCGDYW 790
            REIVVRD  RFH F+DG CSCGD+W
Sbjct: 618 AREIVVRDVNRFHRFKDGNCSCGDFW 643



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 183/414 (44%), Gaps = 71/414 (17%)

Query: 101 REMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA 160
           R++F++  +  RD V +N +I   + +     A+ + R+M RD   PD FT ++VL   A
Sbjct: 124 RKVFDE--MLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFA 181

Query: 161 LIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEM 220
               + K+ M +H   +K+G      V ++LI +Y  C           M  + +VFD  
Sbjct: 182 ECA-DIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQ---------MDYSMKVFDSF 231

Query: 221 PERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQL 280
            + D + W +M+ GY +N  ++          E +G+              +ML   ++ 
Sbjct: 232 SDCDAVLWNSMLAGYAQNGSVE----------EALGIF------------RRMLQAGVRP 269

Query: 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
              T++S+I A  N  L RLGKQ+HAYL+R         ++ ++++L+ +Y KCG V+ A
Sbjct: 270 VPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFND----NIFISSSLIDMYCKCGNVDIA 325

Query: 341 RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGE 400
           R +FN +   D+VSW A++  Y                               A +G   
Sbjct: 326 RRVFNGIQSPDIVSWTAMIMGY-------------------------------ALHGPTT 354

Query: 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNAL 459
           E   LF +M L   KP    F   +T+C+  G ++NG +    + +  G+  SL    AL
Sbjct: 355 EAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAAL 414

Query: 460 ITMYARCG-VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
                R G + EA N +        S  W+ ++ A   H N   A E+ +++ +
Sbjct: 415 ADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFE 468



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 153/318 (48%), Gaps = 23/318 (7%)

Query: 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346
           + + +CA  GL  L   +HA  +R+       F+    NAL+ L  K    +        
Sbjct: 54  AALKSCAGLGLCTLAASLHALAIRS-GSFADRFTA---NALLNLCIKLPGFHHPFGTNGP 109

Query: 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLF 406
             E  L S     +AY      +  + +F+ M ER+ +SW  +I G A++   +E L + 
Sbjct: 110 SGEGGLES-----AAY------ESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMV 158

Query: 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466
            +M  +GF P  +  +  +   A    ++ G  +H   + +G+D+ +  G++LI MYA C
Sbjct: 159 REMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANC 218

Query: 467 GVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526
             ++ +  VF++  + D+V WN+M+A   Q+G+   A+ ++ +ML+ G+ P  +TF +++
Sbjct: 219 TQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLI 278

Query: 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHY---ARFIDLLCRAGKFSEAKDVIDSLPF 583
            A  +  L++ G++    +H         D+    +  ID+ C+ G    A+ V + +  
Sbjct: 279 PAFGNLSLLRLGKQ----LHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQ- 333

Query: 584 KPSAPIWEALLAGCRIHG 601
            P    W A++ G  +HG
Sbjct: 334 SPDIVSWTAMIMGYALHG 351



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 102/257 (39%), Gaps = 32/257 (12%)

Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMR--LEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
           SW   I   A  G     + LF QMR  +        +   A+ SCAGLG       LHA
Sbjct: 14  SWAYQIRMAASQGQFLHAISLFLQMRASVAPRSSVPASLPAALKSCAGLGLCTLAASLHA 73

Query: 443 QLVHSGYDSSLSAGNALITMYAR--------------------CGVVEAANCVFNTMPNV 482
             + SG  +     NAL+ +  +                        E+   VF+ M   
Sbjct: 74  LAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLER 133

Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542
           D+VSWN +I    +H     A+ +  +M ++G +PD  T  TVL        +K G    
Sbjct: 134 DAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGM--- 190

Query: 543 ETMHGPYGIPPGEDH----YARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCR 598
             +HG Y I  G D+     +  ID+     +   +  V DS      A +W ++LAG  
Sbjct: 191 -VVHG-YAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFS-DCDAVLWNSMLAGYA 247

Query: 599 IHGNIDLGIQAAEQLFQ 615
            +G+++  +    ++ Q
Sbjct: 248 QNGSVEEALGIFRRMLQ 264



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 45/157 (28%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L + +HA++I + F     I + LID+YCK   +  AR +F+ I  PDIV+         
Sbjct: 289 LGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVS--------- 339

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                                   + AMI  Y+ +     A  LF  M   +VKP++ TF
Sbjct: 340 ------------------------WTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITF 375

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLN 189
            +VL+A +            H  +V +G   F S+ N
Sbjct: 376 LAVLTACS------------HAGLVDNGWKYFNSMSN 400


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/538 (38%), Positives = 314/538 (58%), Gaps = 45/538 (8%)

Query: 235 YVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTY 285
           Y K   LD AR   D M     V W ALI+G+              +ML L +Q + FT 
Sbjct: 133 YAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTL 192

Query: 286 TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFN 345
           +S++ A  +      G Q+HA+ L+   +     S+ V +ALV +Y +CG          
Sbjct: 193 SSLLKASGSEHGLDPGTQLHAFCLKYGYQS----SVYVGSALVDMYARCGH--------- 239

Query: 346 QMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKL 405
                                 +D A+  F+ M  ++ +SW  +ISG A+ G GE  L L
Sbjct: 240 ----------------------MDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHL 277

Query: 406 FSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465
             +M+ + F+P  + ++   ++CA +GALE G+ +HA ++ SG       GN L+ MYA+
Sbjct: 278 LWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAK 337

Query: 466 CGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTV 525
            G ++ A  VF+ +   D VSWN M+    QHG G   ++ +EQML+ GI P+ I+FL V
Sbjct: 338 AGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCV 397

Query: 526 LSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP 585
           L+AC+H+GL+ EG  YFE M   Y + P   HY  F+DLL R G    A+  I  +P +P
Sbjct: 398 LTACSHSGLLDEGLYYFELMK-KYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEP 456

Query: 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645
           +A +W ALL  CR+H N++LG+ AAE+ F+L PH +G  +LLSN+YA+ GRW D A+VRK
Sbjct: 457 TAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRK 516

Query: 646 LMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKF 705
           +M++ GVKK+P CSW+E++N VH+F+ +D  HP+ + +    E++  +++++GYVPDT  
Sbjct: 517 MMKESGVKKQPACSWVEIENAVHLFVANDETHPQIKEIRGKWEEISGKIKEIGYVPDTSH 576

Query: 706 VLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKV 763
           VL  ++  ++E  L  HSEKLA+AF L+  P G+ +R+ KN+R+CGDCH A KF+SK+
Sbjct: 577 VLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDCHAAIKFVSKI 634



 Score =  162 bits (411), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 161/337 (47%), Gaps = 47/337 (13%)

Query: 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344
           Y+ ++  C   G    G+ VHA+L+ +      +  L + N +V +Y KCG +++AR +F
Sbjct: 90  YSKLLKECTRLGKVEQGRIVHAHLVDSHFL---DNHLVLQNIIVNMYAKCGCLDDARRMF 146

Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404
           ++MP +D+V+W                               T +I+G +QN    + L 
Sbjct: 147 DEMPTKDMVTW-------------------------------TALIAGFSQNNRPRDALL 175

Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
           LF QM   G +P  +  +  + +      L+ G QLHA  +  GY SS+  G+AL+ MYA
Sbjct: 176 LFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYA 235

Query: 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT 524
           RCG ++AA   F+ MP    VSWNA+I+   + G G  A+ L  +M ++   P   T+ +
Sbjct: 236 RCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSS 295

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA----RFIDLLCRAGKFSEAKDVIDS 580
           V SAC   G +++G+     M     I  G    A      +D+  +AG   +AK V D 
Sbjct: 296 VFSACASIGALEQGKWVHAHM-----IKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDR 350

Query: 581 LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
           L  KP    W  +L GC  HG   LG +  ++  Q++
Sbjct: 351 L-VKPDVVSWNTMLTGCAQHG---LGKETLDRFEQML 383



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 127/502 (25%), Positives = 208/502 (41%), Gaps = 111/502 (22%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHII-NRLIDIYCKSLKLVYARTL 72
           N Y+  L+ C     +     R VHAH++ S F     ++ N ++++Y K   L  AR +
Sbjct: 88  NLYSKLLKECTRLGKVEQ--GRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRM 145

Query: 73  FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
           FDE+P  D+V  T LIA                                  +S N+    
Sbjct: 146 FDEMPTKDMVTWTALIA---------------------------------GFSQNNRPRD 172

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           A+ LF  M R  ++P++FT +S+L A            Q+H   +K G      V +AL+
Sbjct: 173 ALLLFPQMLRLGLQPNHFTLSSLLKASG-SEHGLDPGTQLHAFCLKYGYQSSVYVGSALV 231

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
            +Y +C           M AA+  FD MP + E+SW  +++G+ +            G  
Sbjct: 232 DMYARC---------GHMDAAQLAFDGMPTKSEVSWNALISGHARK-----------GEG 271

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
           E+            +H   KM     Q   FTY+SV SACA+ G    GK VHA+++++ 
Sbjct: 272 EHA-----------LHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSG 320

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
            K        + N L+ +Y K G +++A+ +F+++ + D+VSWN +L             
Sbjct: 321 LK----LIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTML------------- 363

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
                             +G AQ+G G+E L  F QM   G +P + +F   +T+C+  G
Sbjct: 364 ------------------TGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSG 405

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMI 491
            L+ G      +     +  +      + +  R G+++ A      MP    +  W A++
Sbjct: 406 LLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALL 465

Query: 492 AALGQHGN-------GARAIEL 506
            A   H N         RA EL
Sbjct: 466 GACRMHKNMELGVYAAERAFEL 487



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 117/261 (44%), Gaps = 12/261 (4%)

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY-DSSLSAGN 457
           G  GL     ++     P    ++  +  C  LG +E GR +HA LV S + D+ L   N
Sbjct: 68  GGTGLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQN 127

Query: 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
            ++ MYA+CG ++ A  +F+ MP  D V+W A+IA   Q+     A+ L+ QML+ G+ P
Sbjct: 128 IIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQP 187

Query: 518 DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577
           +  T  ++L A      +  G +        YG        +  +D+  R G    A+  
Sbjct: 188 NHFTLSSLLKASGSEHGLDPGTQ-LHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLA 246

Query: 578 IDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL-----MPHHAGTYVLLSNMYA 632
            D +P K S   W AL++G   H     G  A   L+++      P H  TY  + +  A
Sbjct: 247 FDGMPTK-SEVSWNALISG---HARKGEGEHALHLLWKMQRKNFQPTHF-TYSSVFSACA 301

Query: 633 NLGRWDDAARVRKLMRDRGVK 653
           ++G  +    V   M   G+K
Sbjct: 302 SIGALEQGKWVHAHMIKSGLK 322


>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 750

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 252/766 (32%), Positives = 388/766 (50%), Gaps = 120/766 (15%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           S  R +H  M      P   + N ++ +YC+   L  A  LFDE+   + V+RTT+I+AY
Sbjct: 98  SHGRLLHNRMRMGIENPSVLLQNCVLQMYCECGSLEDADKLFDEMSDLNAVSRTTMISAY 157

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
           +        + + +K                          A+ LF  M     KP +  
Sbjct: 158 AE-------QGLLDK--------------------------AVGLFSRMLESGDKPPSSM 184

Query: 152 FTSVLSAL----ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSR 207
           +T++L +L    AL +       Q+H  V+++G     S+   ++++YVKC         
Sbjct: 185 YTTLLKSLVNPRALDIGR-----QIHAHVIRAGLCSNASIETGIVNMYVKC--------- 230

Query: 208 SLMGAARRVFDEMPERDELSWTTMMTGYVK-NDYLDAAREFLDGMSENVGVAWNALISGY 266
             +  A+RVFD+M  +  ++WT +M GY +     DA + F+D ++E  GV W       
Sbjct: 231 GWLVGAKRVFDQMAVKKPVAWTGLMVGYTQAGRARDALKLFVDLITE--GVEW------- 281

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                         D F ++ V+ ACA+    R GKQ+HA +    AK   E  + V   
Sbjct: 282 --------------DSFVFSVVLKACASLEELRFGKQIHACV----AKLGLECEVSVGTP 323

Query: 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
           LV  Y KC     A   F ++ E + VSW+AI+S Y      +EA   F+++R +N    
Sbjct: 324 LVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKN---- 379

Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
            V+++                           + +     +C+ L     G Q+HA  + 
Sbjct: 380 AVVLNS--------------------------FTYTSIFQACSVLADCNIGGQVHADAIK 413

Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
                S    +ALITMY++CG ++ A+ VF +M N D V+W A I+    +GN + A+ L
Sbjct: 414 RSLIGSQYGESALITMYSKCGCLDDAHEVFESMDNPDIVAWTAFISGHAYYGNASEALRL 473

Query: 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
           +E+M+  G+ P+ +TF+ VL+AC+HAGLV++G+ Y +TM   Y + P  DHY   ID+  
Sbjct: 474 FEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHYLDTMLRKYNVAPTIDHYDCMIDIYA 533

Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626
           R+G   EA   + ++PF+P A  W+  L+GC  H N++LG  A E+L QL P     YVL
Sbjct: 534 RSGLLDEALRFMKNMPFEPDAMSWKCFLSGCWTHKNLELGKIAGEELRQLDPEDTAGYVL 593

Query: 627 LSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKY 686
             N+Y   G+W++AA V KLM +R +KKE  CSWI+   K+H F+V D  HP++Q +Y+ 
Sbjct: 594 PFNLYTWAGKWEEAAEVMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQSQEIYEK 653

Query: 687 LEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGG--ATVRVL 744
           L++        G++    F     E  ++   L  HSE+LA+AFGL+ + G   A ++V 
Sbjct: 654 LKEFD------GFMEGDMFQCSMTERREQ---LLDHSERLAIAFGLISVNGNARAPIKVF 704

Query: 745 KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           KNLR C DCH   K +S V G EIV+RD +RFHHF++GKCSC DYW
Sbjct: 705 KNLRACPDCHEFAKHVSLVTGHEIVIRDSRRFHHFKEGKCSCNDYW 750



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 124/476 (26%), Positives = 204/476 (42%), Gaps = 103/476 (21%)

Query: 27  NPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTT 86
           NP    + R +HAH+I +G      I   ++++Y K   LV A+ +FD++     VA T 
Sbjct: 194 NPRALDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVAWTG 253

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           L+  Y+ +               + RD                   A++LF D+  + V+
Sbjct: 254 LMVGYTQAG--------------RARD-------------------ALKLFVDLITEGVE 280

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
            D+F F+ VL A A + EE +   Q+H  V K G     SV   L+  Y+KC S      
Sbjct: 281 WDSFVFSVVLKACASL-EELRFGKQIHACVAKLGLECEVSVGTPLVDFYIKCSS------ 333

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVK-NDYLDAAREFLDGMSENVGVAWNALISG 265
                +A R F E+ E +++SW+ +++GY + + + +A + F    S+N  V        
Sbjct: 334 ---FESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAVV-------- 382

Query: 266 YVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325
                         L+ FTYTS+  AC+      +G QVHA  +    K +   S    +
Sbjct: 383 --------------LNSFTYTSIFQACSVLADCNIGGQVHADAI----KRSLIGSQYGES 424

Query: 326 ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLS 385
           AL+T+Y KCG +++A ++F  M   D+V+W A +S +                       
Sbjct: 425 ALITMYSKCGCLDDAHEVFESMDNPDIVAWTAFISGH----------------------- 461

Query: 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ-LHAQL 444
                   A  G   E L+LF +M   G KP    F   +T+C+  G +E G+  L   L
Sbjct: 462 --------AYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHYLDTML 513

Query: 445 VHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQHGN 499
                  ++   + +I +YAR G+++ A      MP   D++SW   ++    H N
Sbjct: 514 RKYNVAPTIDHYDCMIDIYARSGLLDEALRFMKNMPFEPDAMSWKCFLSGCWTHKN 569



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/410 (22%), Positives = 165/410 (40%), Gaps = 80/410 (19%)

Query: 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
           + +  ++Y  +  AC        G+ +H  +      P    S+ + N ++ +Y +CG +
Sbjct: 77  VSVSLYSYQCLFEACRELRSLSHGRLLHNRMRMGIENP----SVLLQNCVLQMYCECGSL 132

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNG 397
            +A  +F++M + + VS   ++SAY   GL+D+A                          
Sbjct: 133 EDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKA-------------------------- 166

Query: 398 YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN 457
                + LFS+M   G KP    +   + S     AL+ GRQ+HA ++ +G  S+ S   
Sbjct: 167 -----VGLFSRMLESGDKPPSSMYTTLLKSLVNPRALDIGRQIHAHVIRAGLCSNASIET 221

Query: 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
            ++ MY +CG +  A  VF+ M     V+W  ++    Q G    A++L+  ++ EG+  
Sbjct: 222 GIVNMYVKCGWLVGAKRVFDQMAVKKPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEW 281

Query: 518 DRITFLTVLSACNHAGLVKEGRRYFETMHG-----------PYGIP-------------- 552
           D   F  VL AC  A L  E  R+ + +H              G P              
Sbjct: 282 DSFVFSVVLKAC--ASL--EELRFGKQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESA 337

Query: 553 ---------PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI----WEALLAGCRI 599
                    P +  ++  I   C+  +F EA     SL  K +  +    + ++   C +
Sbjct: 338 CRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSV 397

Query: 600 HGNIDLGIQAAEQLFQ--LMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647
             + ++G Q      +  L+    G   L++ MY+  G  DDA  V + M
Sbjct: 398 LADCNIGGQVHADAIKRSLIGSQYGESALIT-MYSKCGCLDDAHEVFESM 446



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 116/257 (45%), Gaps = 26/257 (10%)

Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
           FNQ+P     SW ++ S+  S+  I   +   E +           +  L+++G   E  
Sbjct: 23  FNQIP-----SWVSLKSS-TSSVKISHKQGQVENLH----------LVSLSKHGKLNEAF 66

Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
           + F +M   G     Y++     +C  L +L +GR LH ++     + S+   N ++ MY
Sbjct: 67  EFFQEMDKAGVSVSLYSYQCLFEACRELRSLSHGRLLHNRMRMGIENPSVLLQNCVLQMY 126

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
             CG +E A+ +F+ M ++++VS   MI+A  + G   +A+ L+ +ML+ G  P    + 
Sbjct: 127 CECGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGLFSRMLESGDKPPSSMYT 186

Query: 524 TVLSACNHAGLVKEGRRYFETMHGPY---GIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580
           T+L +  +   +  GR+    +H      G+          +++  + G    AK V D 
Sbjct: 187 TLLKSLVNPRALDIGRQ----IHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQ 242

Query: 581 LPFKPSAPI-WEALLAG 596
           +  K   P+ W  L+ G
Sbjct: 243 MAVKK--PVAWTGLMVG 257


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 229/627 (36%), Positives = 350/627 (55%), Gaps = 74/627 (11%)

Query: 171 QMHCTVVKSGTGLFTS---VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS 227
           Q+H   ++SG  LF S     +AL+ +Y  C S P          ARR FDE+P+ + + 
Sbjct: 114 QLHLLALRSG--LFPSDPYSASALLHMYHHC-SRPM--------DARRAFDEIPDPNPVI 162

Query: 228 WTTMMTGYVKNDYLDAAREFLDGM--SENVGVAWNALISGYVHRELKMLMLRIQLDEFTY 285
            T M +GYV+N+ +  + E    M  S++  V                      +DE   
Sbjct: 163 VTAMASGYVRNNLVYHSLELFRAMIASDSASV----------------------VDEAAA 200

Query: 286 TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFN 345
               SA A      +   +HA +                 A +      G VN   D + 
Sbjct: 201 LVAFSASARVPDRGVTASLHALI-----------------AKIGFERNAGVVNTMLDSYA 243

Query: 346 QMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKL 405
           +   RDL                + A+ +F+ M ER+++SW  MI+  AQNG   E + L
Sbjct: 244 KGGSRDL----------------EVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGL 286

Query: 406 FSQM-RLEGFKPCD-YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
           +S+M  + G   C+  A +  + +CA  GA++ G+++H Q+V  G + ++  G +++ MY
Sbjct: 287 YSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMY 346

Query: 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523
           ++CG VE A+  F  +   + +SW+AMI   G HG G  A+E++ +M + G+ P+ ITF+
Sbjct: 347 SKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFI 406

Query: 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF 583
           +VL+AC+HAGL+ EGR ++  M   +GI  G +HY   +DLL RAG   EA  +I  +  
Sbjct: 407 SVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKV 466

Query: 584 KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARV 643
           KP A IW ALL+ CRIH N++L   + ++LF+L   ++G YVLLSN+YA    W D  R+
Sbjct: 467 KPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERI 526

Query: 644 RKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDT 703
           R L++ R ++K PG S  E+  K+++F V D +HP+   +Y YLE+L+  M++ GYVP+T
Sbjct: 527 RLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNT 586

Query: 704 KFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKV 763
             VLHD++ ++KE AL  HSEKLAVAF LM     + + ++KNLR+C DCH A KF++K+
Sbjct: 587 GSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKI 646

Query: 764 VGREIVVRDGKRFHHFRDGKCSCGDYW 790
             REI++RD +RFHHF+DG CSC DYW
Sbjct: 647 TEREIIIRDLQRFHHFKDGLCSCRDYW 673



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 144/344 (41%), Gaps = 82/344 (23%)

Query: 25  PRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVAR 84
           P   +T+SL    HA +   GF+    ++N ++D Y K                      
Sbjct: 211 PDRGVTASL----HALIAKIGFERNAGVVNTMLDSYAKG--------------------- 245

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR-- 142
                    S ++++AR++F+      RD V +N+MI  Y+ N     AI L+  M    
Sbjct: 246 --------GSRDLEVARKVFDTME---RDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVG 294

Query: 143 DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSP 202
             +K +    ++VL A A      +   ++H  VV+ G      V  +++ +Y KC    
Sbjct: 295 GGIKCNAVALSAVLLACAH-AGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKC---- 349

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL 262
               R  M  A R F ++ E++ LSW+ M+TGY              GM    G    AL
Sbjct: 350 ---GRVEM--ASRAFRKIKEKNILSWSAMITGY--------------GMH---GRGQEAL 387

Query: 263 ISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
               +  E+K   LR   +  T+ SV++AC+++GL   G+  +  + +       EF + 
Sbjct: 388 ---EIFTEMKRSGLRP--NYITFISVLAACSHAGLLDEGRYWYNAMKQ-------EFGIE 435

Query: 323 VN----NALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
                   +V L  + G ++EA  +  +M  + D   W A+LSA
Sbjct: 436 AGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSA 479


>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
 gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
          Length = 869

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 259/756 (34%), Positives = 374/756 (49%), Gaps = 103/756 (13%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           + R VHAH++  GF     ++N L+ +Y K   +V AR +FD                  
Sbjct: 213 MGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDS----------------- 255

Query: 93  ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152
                           + + D + +NAMI  +  N   +A +ELF  M +D+V+P+  T 
Sbjct: 256 ----------------MAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTI 299

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
           TSV  A  L+  +     +MH   VK G     +  N+LI +Y         +S  +MG 
Sbjct: 300 TSVTVASGLL-SDITFAKEMHGLAVKRGFATDVAFCNSLIQMY---------ASLGMMGQ 349

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           AR VF  M  RD +SWT M++GY KN + D A E    M  N                  
Sbjct: 350 ARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVN------------------ 391

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
                +  D+ T  S ++ACA  G   +G ++H                           
Sbjct: 392 ----NVSPDDITIASALAACACLGSLDVGVKLH--------------------------- 420

Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
              ++ E++   +      +V  NA+L  Y  +  ID+A  +F+ M E++++SW+ MI+G
Sbjct: 421 ---ELAESKGFMSY-----VVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAG 472

Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
              N    E L  F  M L   KP    F  A+ +CA  GAL +G+++HA ++  G    
Sbjct: 473 FCFNHRNFEALYYFRHM-LADVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYE 531

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
               NALI +Y +CG    A   F      D VSWN MIA    HGNG  A+  + QM+K
Sbjct: 532 GYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGNGETALSFFNQMVK 591

Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
            G  PD +TF+ +L AC+  G+V EG   F +M   Y I P   HYA  +DLL R G+ +
Sbjct: 592 IGECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKYSIVPNLKHYACMVDLLSRVGQLT 651

Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632
           EA + I+ +P  P A +W ALL GCRIH +++LG  AA+ + +L P+ AG +VLL ++YA
Sbjct: 652 EAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAKYVLELEPNDAGYHVLLCDLYA 711

Query: 633 NLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVL 692
           + G WD  ARVRK MR++G+  + GCSW+EV   VH FL DD +HP+ + +   LE +  
Sbjct: 712 DAGIWDKLARVRKTMREKGLDHDSGCSWVEVKGVVHAFLTDDESHPQIREINTVLEGIYE 771

Query: 693 EMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGD 752
            M+  G  P       D     K+     HSE+LAVAFGL+    G ++ V KN   C  
Sbjct: 772 RMKASGCAPVESHSPED--KVLKDDIFCGHSERLAVAFGLINTTPGTSISVTKNQYTCQS 829

Query: 753 CHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788
           CH   K +S +V R+I+VRD K+ HHF+DG CSCGD
Sbjct: 830 CHRILKMISYIVRRDIIVRDSKQVHHFKDGSCSCGD 865



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 138/529 (26%), Positives = 225/529 (42%), Gaps = 96/529 (18%)

Query: 100 AREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL 159
           A  +F K P   RD   +N M+  Y        A++L+  M    V+PD +TF  VL + 
Sbjct: 148 AWRVFAKMP--ERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRPDVYTFPCVLRSC 205

Query: 160 ALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDE 219
              V + +   ++H  V++ G      VLNAL+++Y KC           + AAR+VFD 
Sbjct: 206 G-GVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGD---------VVAARKVFDS 255

Query: 220 MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQ 279
           M   D +SW  M+ G+ +N   +A  E                        L ML   +Q
Sbjct: 256 MAVMDCISWNAMIAGHFENGECNAGLELF----------------------LTMLQDEVQ 293

Query: 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339
            +  T TSV  A          K++H   ++        F     N+L+ +Y   G + +
Sbjct: 294 PNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDVAFC----NSLIQMYASLGMMGQ 349

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
           AR +F++M  RD +SW A++S Y                                +NG+ 
Sbjct: 350 ARTVFSRMDTRDAMSWTAMISGY-------------------------------EKNGFP 378

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
           ++ L++++ M +    P D   A A+ +CA LG+L+ G +LH      G+ S +   NAL
Sbjct: 379 DKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSYVVVTNAL 438

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           + MYA+   ++ A  VF  MP  D VSW++MIA    +     A+  +  ML + + P+ 
Sbjct: 439 LEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLAD-VKPNS 497

Query: 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPY---GIPPGEDHYARFIDLLCRAGKFS---- 572
           +TF+  L+AC   G ++ G+     +H      GI          IDL  + G+      
Sbjct: 498 VTFIAALAACAATGALRSGKE----IHAHVLRCGIAYEGYLPNALIDLYVKCGQTGYAWA 553

Query: 573 -----EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
                 AKDV+           W  ++AG   HGN +  +    Q+ ++
Sbjct: 554 QFCAHGAKDVVS----------WNIMIAGFVAHGNGETALSFFNQMVKI 592



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 131/256 (51%), Gaps = 8/256 (3%)

Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
           NA+LS  V  G    A  +F  M ER++ SW VM+ G  + G  EE L L+ +M   G +
Sbjct: 133 NAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVR 192

Query: 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475
           P  Y F   + SC G+     GR++HA ++  G+   +   NAL+TMYA+CG V AA  V
Sbjct: 193 PDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKV 252

Query: 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535
           F++M  +D +SWNAMIA   ++G     +EL+  ML++ + P+ +T  +V  A   +GL+
Sbjct: 253 FDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVA---SGLL 309

Query: 536 KEGRRYFETMHG---PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592
            +   + + MHG     G           I +    G   +A+ V   +  +  A  W A
Sbjct: 310 SD-ITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTR-DAMSWTA 367

Query: 593 LLAGCRIHGNIDLGIQ 608
           +++G   +G  D  ++
Sbjct: 368 MISGYEKNGFPDKALE 383



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 88/202 (43%), Gaps = 6/202 (2%)

Query: 416 PCDYAFAGAITSCAGLGALENGRQL--HAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473
           P + A+      C    A+E G +   HA   H+ +   L  GNA+++M  R G    A 
Sbjct: 92  PDEDAYVALFRLCEWRRAVEPGLRACAHADDRHAWF--GLRLGNAMLSMLVRFGETWHAW 149

Query: 474 CVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533
            VF  MP  D  SWN M+   G+ G    A++LY +M+  G+ PD  TF  VL +C    
Sbjct: 150 RVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRPDVYTFPCVLRSCGGVP 209

Query: 534 LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEAL 593
             + GR     +   +G     D     + +  + G    A+ V DS+        W A+
Sbjct: 210 DWRMGREVHAHVL-RFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVMDCIS-WNAM 267

Query: 594 LAGCRIHGNIDLGIQAAEQLFQ 615
           +AG   +G  + G++    + Q
Sbjct: 268 IAGHFENGECNAGLELFLTMLQ 289


>gi|7488184|pir||E71401 probable selenium-binding protein - Arabidopsis thaliana
          Length = 1070

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/517 (39%), Positives = 315/517 (60%), Gaps = 25/517 (4%)

Query: 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
           ++ D+F +++++ ACAN G    G+QVH + + +E          V ++LV +Y KCG +
Sbjct: 38  LRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEV----VKSSLVDMYAKCGLL 93

Query: 338 NEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNG 397
           N A+ +F+ +  ++ +SW A++S Y  +G  +EA  LF  +  +NL SWT +ISG  Q+G
Sbjct: 94  NSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSG 153

Query: 398 YGEEGLKLFSQMRLEGFKPCD-YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
            G E   +F++MR E     D    +  + +CA L A   GRQ+H              G
Sbjct: 154 KGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVH--------------G 199

Query: 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516
           NALI MYA+C  V AA  +F+ M + D VSW ++I  + QHG   +A+ LY+ M+  G+ 
Sbjct: 200 NALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVK 259

Query: 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
           P+ +TF+ ++ AC+H G V++GR  F++M   YGI P   HY   +DLL R+G   EA++
Sbjct: 260 PNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAEN 319

Query: 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL---FQLMPHHAGTYVLLSNMYAN 633
           +I ++PF P  P W ALL+ C+  G   +GI+ A+ L   F+L      TY+LLSN+YA+
Sbjct: 320 LIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKL--KDPSTYILLSNIYAS 377

Query: 634 LGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLE 693
              W   +  R+ + +  V+K+PG S +EV  +  VF   +T+HP  + +++ L++L  E
Sbjct: 378 ASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEE 437

Query: 694 MR-KLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGD 752
           MR + GYVPDT ++LHDM+  +KE  L  HSE+ AVA+GL+K   G  +R++KNLR+CGD
Sbjct: 438 MRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGD 497

Query: 753 CHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 789
           CH   K +S++  REI+VRD  R+HHF+ GKCSC D+
Sbjct: 498 CHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDF 534



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 148/331 (44%), Gaps = 55/331 (16%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R VH H I S +   E + + L+D+Y K   L  A+ +FD I   + ++ T +++ Y+ 
Sbjct: 61  GRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAK 120

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP-DNFTF 152
           S   + A E+F   P+K  +   + A+I+ +  +  G  A  +F +MRR+ V   D    
Sbjct: 121 SGRKEEALELFRILPVK--NLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVL 178

Query: 153 TSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212
           +S++ A A +        Q+H               NALI +Y KC         S + A
Sbjct: 179 SSIVGACANLA-ASIAGRQVHG--------------NALIDMYAKC---------SDVIA 214

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
           A+ +F  M  RD +SWT+++ G  ++   + A    D M  +                  
Sbjct: 215 AKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSH------------------ 256

Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPEFSLPVNNALVTLY 331
                ++ +E T+  +I AC++ G    G+++   + +    +P    SL     L+ L 
Sbjct: 257 ----GVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRP----SLQHYTCLLDLL 308

Query: 332 WKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
            + G ++EA ++ + MP   D  +W A+LSA
Sbjct: 309 GRSGLLDEAENLIHTMPFPPDEPTWAALLSA 339


>gi|224118338|ref|XP_002317794.1| predicted protein [Populus trichocarpa]
 gi|222858467|gb|EEE96014.1| predicted protein [Populus trichocarpa]
          Length = 852

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 238/684 (34%), Positives = 379/684 (55%), Gaps = 36/684 (5%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L R +H  +I   F    ++ N LID+Y K   L  A+ +  ++P+ D V   ++I A +
Sbjct: 178 LGRQLHGLVIKFRFCLNIYVSNALIDMYGKCGSLDDAKKVLVKMPERDSVTWNSVITACA 237

Query: 93  ASDNVKLAREMFNKTP---LKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149
           A+  V  A E   K       M + V ++A+I  ++ N     AIE+   M+ + + P+ 
Sbjct: 238 ANGMVYEALEFLEKMKSLDYSMPNVVSWSAVIGGFAQNGYDEEAIEMLFRMQVEGLVPNA 297

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
            T   VL A A + +      Q+H  + +        V+NAL+ VY +C           
Sbjct: 298 QTLAGVLPACARL-QRLDLGKQLHGYITRHDFISNPVVVNALVDVYRRCGD--------- 347

Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS----ENVGVAWNALISG 265
           MG A ++F +   ++ LS  TM+ GY ++  +  A+E  D M     E   ++WN++ISG
Sbjct: 348 MGGAAKIFLKFSVKNVLSCNTMIVGYCESGDVSKAKELFDCMDVLGIERGLISWNSIISG 407

Query: 266 YVHREL---------KMLMLR-IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           YV   +          MLM   I+ D FT  SV++ACA++   R GK++HA  +  +   
Sbjct: 408 YVRNFMFDEAFSMFQNMLMEEGIEPDSFTLGSVLTACADTISLRQGKEIHAQAI-VKGLQ 466

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
           +  F   V  ALV +Y KC  +  A+  F+++ E+D+ +WNA++S Y  +  I+  + L 
Sbjct: 467 SDTF---VGGALVEMYSKCQDLTAAQVAFDEVMEKDVPTWNALISGYTRSNQIERIQYLL 523

Query: 376 EAMR----ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431
           E M+      N+ +W  +++GL +N   +  ++LFS+M++   +P  Y     + +C+ L
Sbjct: 524 EKMKGDGYHPNIYTWNSILAGLVENRQLDLTMQLFSEMQISKLRPDIYTVGIILPACSRL 583

Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
             LE G+Q HA  +  GYD+ +  G AL+ MYA+CG ++ A   ++ + N + VS NAM+
Sbjct: 584 ATLERGKQAHAHSIKCGYDTDVHIGAALVDMYAKCGSLKYAQLAYDRISNPNLVSHNAML 643

Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
            A   HG+G   I L++ ML  G +PD +TFL+VLS+C H G V+ G  +F+ M G Y +
Sbjct: 644 TACAMHGHGEEGISLFQTMLALGFIPDHVTFLSVLSSCVHVGSVETGCEFFDLM-GYYNV 702

Query: 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611
            P   HY   +DLL R+G+  EA ++I  +P +  + +W ALL GC  HGNI+LG  AAE
Sbjct: 703 KPTLKHYTSMVDLLSRSGQLHEAYELIKKMPVECDSVLWGALLGGCVTHGNIELGEIAAE 762

Query: 612 QLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFL 671
           +L +L P+++G YVLL+N++A   RW D ARVR +M+DRG+ K PGCSWIE  N++H FL
Sbjct: 763 RLIELEPNNSGNYVLLANLHAYARRWTDLARVRGMMKDRGMHKSPGCSWIEDKNEIHSFL 822

Query: 672 VDDTAHPEAQAVYKYLEQLVLEMR 695
             D +H  A+ +Y  L+ L L M+
Sbjct: 823 ACDRSHKRAEEIYATLDYLALHMK 846



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 181/678 (26%), Positives = 294/678 (43%), Gaps = 120/678 (17%)

Query: 13  ANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTL 72
            ++YAS L  C         L + VHAH I +GF     I  +L+ +Y +   L  A  L
Sbjct: 62  TSKYASVLDSCK-----CPKLGKQVHAHTIKTGFDADGFIDTKLLQMYARCGLLKDADFL 116

Query: 73  FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
           F+ +P                                 MR+   + A+++ Y  +     
Sbjct: 117 FETMP---------------------------------MRNLHSWKAILSVYLDHGLFEE 143

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           A  LF+ ++ D V+ D F F  V  A + +   E    Q+H  V+K    L   V NALI
Sbjct: 144 AFLLFQVLQFDGVELDFFVFPLVFKACSGLGSVELG-RQLHGLVIKFRFCLNIYVSNALI 202

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
            +Y KC S         +  A++V  +MPERD ++W +++T    N  +  A EFL+ M 
Sbjct: 203 DMYGKCGS---------LDDAKKVLVKMPERDSVTWNSVITACAANGMVYEALEFLEKMK 253

Query: 253 E------NVGVAWNALISGYVH----RELKMLMLRIQLDEF-----TYTSVISACANSGL 297
                  NV V+W+A+I G+       E   ++ R+Q++       T   V+ ACA    
Sbjct: 254 SLDYSMPNV-VSWSAVIGGFAQNGYDEEAIEMLFRMQVEGLVPNAQTLAGVLPACARLQR 312

Query: 298 FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA 357
             LGKQ+H Y+ R +    P     V NALV +Y +CG +  A  IF +   ++++S N 
Sbjct: 313 LDLGKQLHGYITRHDFISNP----VVVNALVDVYRRCGDMGGAAKIFLKFSVKNVLSCNT 368

Query: 358 ILSAYVSAGLIDEAKSLFEAMR----ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL-E 412
           ++  Y  +G + +AK LF+ M     ER L+SW  +ISG  +N   +E   +F  M + E
Sbjct: 369 MIVGYCESGDVSKAKELFDCMDVLGIERGLISWNSIISGYVRNFMFDEAFSMFQNMLMEE 428

Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
           G +P  +     +T+CA   +L  G+++HAQ +  G  S    G AL+ MY++C  + AA
Sbjct: 429 GIEPDSFTLGSVLTACADTISLRQGKEIHAQAIVKGLQSDTFVGGALVEMYSKCQDLTAA 488

Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG------------------ 514
              F+ +   D  +WNA+I+   +     R   L E+M  +G                  
Sbjct: 489 QVAFDEVMEKDVPTWNALISGYTRSNQIERIQYLLEKMKGDGYHPNIYTWNSILAGLVEN 548

Query: 515 -----------------ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED- 556
                            + PD  T   +L AC+    ++ G++        + I  G D 
Sbjct: 549 RQLDLTMQLFSEMQISKLRPDIYTVGIILPACSRLATLERGKQAH-----AHSIKCGYDT 603

Query: 557 --HY-ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
             H  A  +D+  + G    A+   D +   P+     A+L  C +HG+ + GI   + +
Sbjct: 604 DVHIGAALVDMYAKCGSLKYAQLAYDRIS-NPNLVSHNAMLTACAMHGHGEEGISLFQTM 662

Query: 614 FQL--MPHHAGTYVLLSN 629
             L  +P H     +LS+
Sbjct: 663 LALGFIPDHVTFLSVLSS 680



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 119/251 (47%), Gaps = 12/251 (4%)

Query: 298 FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW----------KCGKVNEARDIFNQM 347
           F+  KQ H  +  ++ K    FSL  N  L T  +          K GK   A  I    
Sbjct: 31  FQKLKQAHQPVNISQQKNRSNFSLLDNKPLNTSKYASVLDSCKCPKLGKQVHAHTIKTGF 90

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
                +    +L  Y   GL+ +A  LFE M  RNL SW  ++S    +G  EE   LF 
Sbjct: 91  DADGFID-TKLLQMYARCGLLKDADFLFETMPMRNLHSWKAILSVYLDHGLFEEAFLLFQ 149

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467
            ++ +G +   + F     +C+GLG++E GRQLH  ++   +  ++   NALI MY +CG
Sbjct: 150 VLQFDGVELDFFVFPLVFKACSGLGSVELGRQLHGLVIKFRFCLNIYVSNALIDMYGKCG 209

Query: 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK-EGILPDRITFLTVL 526
            ++ A  V   MP  DSV+WN++I A   +G    A+E  E+M   +  +P+ +++  V+
Sbjct: 210 SLDDAKKVLVKMPERDSVTWNSVITACAANGMVYEALEFLEKMKSLDYSMPNVVSWSAVI 269

Query: 527 SACNHAGLVKE 537
                 G  +E
Sbjct: 270 GGFAQNGYDEE 280



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 86/220 (39%), Gaps = 55/220 (25%)

Query: 28  PITSSLA-----RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIV 82
           P  S LA     +  HAH I  G+    HI   L+D+Y K   L YA+  +D I  P++V
Sbjct: 578 PACSRLATLERGKQAHAHSIKCGYDTDVHIGAALVDMYAKCGSLKYAQLAYDRISNPNLV 637

Query: 83  ARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR 142
           +                                 +NAM+TA + + +G   I LF+ M  
Sbjct: 638 S---------------------------------HNAMLTACAMHGHGEEGISLFQTMLA 664

Query: 143 DDVKPDNFTFTSVLSALALIVEEEKQCM---QMHCTVVKSGTGLFTSVLNALISVYVKCV 199
               PD+ TF SVLS+   +   E  C     M    VK     +TS+++ L        
Sbjct: 665 LGFIPDHVTFLSVLSSCVHVGSVETGCEFFDLMGYYNVKPTLKHYTSMVDLL-------- 716

Query: 200 SSPFVSSRSLMGAARRVFDEMP-ERDELSWTTMMTGYVKN 238
                S    +  A  +  +MP E D + W  ++ G V +
Sbjct: 717 -----SRSGQLHEAYELIKKMPVECDSVLWGALLGGCVTH 751


>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
          Length = 708

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 246/680 (36%), Positives = 369/680 (54%), Gaps = 46/680 (6%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVA---RTTLIAA-----YSASDNVKLAREMFN 105
           N ++D +   L+      L  +I    IV    R+  +AA     Y+    V  A+ +F 
Sbjct: 31  NDVLDFFNDLLQQCSKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFE 90

Query: 106 KTPLK-MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE 164
            +P++   + + +N+++ A   +     A+E++  MR+  V  D FTF  V+ A AL+  
Sbjct: 91  VSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALM-G 149

Query: 165 EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERD 224
             K C  +H  VV+ G      V N L+ +Y K            M  AR+VF+ M  R 
Sbjct: 150 SRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKI---------GRMDDARKVFERMAVRS 200

Query: 225 ELSWTTMMTGYVKNDYLDAAREFLD-----GMSENVGVAWNALISGYV----HRELKMLM 275
            +SW TM++GY  N     A E        G+  N+ V W +L+S +     H E   L 
Sbjct: 201 CVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNL-VTWTSLLSSHARCGQHVETMELF 259

Query: 276 LRIQLDEFTYTS-----VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
            R+++     T+     V+S   +   F  GK +H Y++    K   E  L V N+L+ L
Sbjct: 260 GRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVV----KGGFENYLFVKNSLICL 315

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER--------N 382
           Y K G VN AR +F ++  +++VSWNA++S+Y   G  DEA ++F  + +         N
Sbjct: 316 YGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPN 375

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
           ++SW+ +I G A  G GEE L+LF +M+L   K      A  ++ CA L AL  GR++H 
Sbjct: 376 VVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHG 435

Query: 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
            +V S  D ++  GN LI MY + G  +  N VF  + N D +SWN M+A  G HG G  
Sbjct: 436 HVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGEN 495

Query: 503 AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562
           AI  ++QM+K+G  PD +TF+ VLSAC+HAGLV EGR  F+ M   + + P  +HYA  +
Sbjct: 496 AIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMV 555

Query: 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622
           DLL RAG   EA  V+ S+P +P+A +W ALL  CR+H N ++  + A Q+F L    AG
Sbjct: 556 DLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAG 615

Query: 623 TYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQA 682
           +Y+LLSN+YA  GRW+D+A+VR   + +G+KK PG SWI+V  KV++F   +T H E + 
Sbjct: 616 SYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAELEE 675

Query: 683 VYKYLEQLVLEMRKLGYVPD 702
           VY+ L+ L L+M   GY+PD
Sbjct: 676 VYRILKDLGLQMEVEGYIPD 695



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 118/505 (23%), Positives = 230/505 (45%), Gaps = 70/505 (13%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           +  L RSVH H++  GF+   H+ N L+ +Y K  ++  AR +F+ +     V+  T+++
Sbjct: 150 SRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVS 209

Query: 90  AYSASDNVKLAREMFN--KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147
            Y+ + +   A EMF    +     + V + +++++++        +ELF  MR   +  
Sbjct: 210 GYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGA 269

Query: 148 DNFTFTSVLS-ALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
                  VLS ++ L   +E +   +H  VVK G   +  V N+LI +Y K         
Sbjct: 270 TAEALAVVLSVSVDLAAFDEGKV--IHGYVVKGGFENYLFVKNSLICLYGK--------- 318

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE---------NVGV 257
              + AAR +F E+  ++ +SW  +++ Y    + D A      + +         NV V
Sbjct: 319 HGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNV-V 377

Query: 258 AWNALISGYVHR-------EL--KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
           +W+A+I G+  +       EL  +M + +++ +  T  SV+S CA      LG+++H ++
Sbjct: 378 SWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHV 437

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
           +R+      + ++ V N L+ +Y K G   E   +F ++  +DL+SWN            
Sbjct: 438 VRS----LMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNT----------- 482

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
                               M++G   +G GE  ++ F QM  +GF+P    F   +++C
Sbjct: 483 --------------------MVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSAC 522

Query: 429 AGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVS 486
           +  G +  GR+L  +++     +  +     ++ +  R G+++ A+ V  +MP   ++  
Sbjct: 523 SHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACV 582

Query: 487 WNAMIAALGQHGNGARAIELYEQML 511
           W A++ +   H N   A E   Q+ 
Sbjct: 583 WGALLNSCRMHKNTEVAEETASQIF 607


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/582 (37%), Positives = 334/582 (57%), Gaps = 60/582 (10%)

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM--SENVGVAWNALISGYVHRE 270
           ARR FDE+P+ + +  T M +GYV+N+ +  + E    M  S++  V             
Sbjct: 3   ARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASV------------- 49

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
                    +DE       SA A      +   +HA +    AK   E +  V N ++  
Sbjct: 50  ---------VDEAAALVAFSASARVPDRGVTASLHALI----AKIGFERNAGVVNTMLDS 96

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMI 390
           Y K G              RDL                + A+ +F+ M ER+++SW  MI
Sbjct: 97  YAKGGS-------------RDL----------------EVARKVFDTM-ERDVVSWNSMI 126

Query: 391 SGLAQNGYGEEGLKLFSQM-RLEGFKPCD-YAFAGAITSCAGLGALENGRQLHAQLVHSG 448
           +  AQNG   E + L+S+M  + G   C+  A +  + +CA  GA++ G+ +H Q+V  G
Sbjct: 127 ALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQVVRMG 186

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYE 508
            + ++  G +++ MY++CG VE A+  F  +   + +SW+AMI   G HG G  A+E++ 
Sbjct: 187 LEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFT 246

Query: 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568
           +M + G+ P+ ITF++VL+AC+HAGL+ EGR ++  M   +GI  G +HY   +DLL RA
Sbjct: 247 EMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRA 306

Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628
           G   EA  +I  +  KP A IW ALL+ CRIH N++L   + ++LF+L   ++G YVLLS
Sbjct: 307 GCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLS 366

Query: 629 NMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLE 688
           N+YA  G W D  R+R L++ R ++K PG S  E+  K+++F V D +HP+   +Y YLE
Sbjct: 367 NIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLE 426

Query: 689 QLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLR 748
           +L+  M++ GYVP+T  VLHD++ ++KE AL  HSEKLAVAF LM     + + ++KNLR
Sbjct: 427 KLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLR 486

Query: 749 ICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +C DCH A KF++K+  REI++RD +RFHHF+DG CSC DYW
Sbjct: 487 VCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 528



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 115/267 (43%), Gaps = 36/267 (13%)

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGY 398
           +AR  F+++P+ + V   A+ S YV   L+  +  LF AM   +  S +V+    A    
Sbjct: 2   DARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASD--SASVVDEAAA---- 55

Query: 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458
               L  FS              A A     G+ A      LHA +   G++ +    N 
Sbjct: 56  ----LVAFS--------------ASARVPDRGVTA-----SLHALIAKIGFERNAGVVNT 92

Query: 459 LITMYARCGV--VEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK--EG 514
           ++  YA+ G   +E A  VF+TM   D VSWN+MIA   Q+G  A AI LY +ML    G
Sbjct: 93  MLDSYAKGGSRDLEVARKVFDTMER-DVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGG 151

Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
           I  + +    VL AC HAG ++ G ++        G+          +D+  + G+   A
Sbjct: 152 IKCNAVALSAVLLACAHAGAIQTG-KHIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMA 210

Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHG 601
                 +  K     W A++ G  +HG
Sbjct: 211 SRAFRKIKEKNILS-WSAMITGYGMHG 236



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 142/344 (41%), Gaps = 82/344 (23%)

Query: 25  PRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVAR 84
           P   +T+SL    HA +   GF+    ++N ++D Y K                      
Sbjct: 66  PDRGVTASL----HALIAKIGFERNAGVVNTMLDSYAKG--------------------- 100

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR-- 142
                    S ++++AR++F+      RD V +N+MI  Y+ N     AI L+  M    
Sbjct: 101 --------GSRDLEVARKVFDTME---RDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVG 149

Query: 143 DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSP 202
             +K +    ++VL A A      +    +H  VV+ G      V  +++ +Y KC    
Sbjct: 150 GGIKCNAVALSAVLLACAH-AGAIQTGKHIHNQVVRMGLEENVYVGTSIVDMYSKC---- 204

Query: 203 FVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNAL 262
               R  M  A R F ++ E++ LSW+ M+TGY              GM    G    AL
Sbjct: 205 ---GRVEM--ASRAFRKIKEKNILSWSAMITGY--------------GMH---GRGQEAL 242

Query: 263 ISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
               +  E+K   LR   +  T+ SV++AC+++GL   G+  +  +         EF + 
Sbjct: 243 ---EIFTEMKRSGLR--PNYITFISVLAACSHAGLLDEGRYWYNAM-------KQEFGIE 290

Query: 323 VN----NALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
                   +V L  + G ++EA  +  +M  + D   W A+LSA
Sbjct: 291 AGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSA 334


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 229/622 (36%), Positives = 339/622 (54%), Gaps = 57/622 (9%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSW-T 229
           Q+H   VKSG     + +  L+++     +    +  + +  AR+VFD +P   ++ W  
Sbjct: 49  QLHAAAVKSGLQAHPAFVTRLLTL----CTDQGAAKPAQLSYARQVFDRIPGPGDVVWYN 104

Query: 230 TMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVI 289
           T++ GY +      AR      +E     +           ++ML   +  D +T+ S++
Sbjct: 105 TLLRGYARCSAAGGARP----PAEEAARVF-----------VRMLEEGVAPDTYTFVSLL 149

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
            ACA +     G+Q H   ++  A    E+ LP    L+ +Y +CG    AR +F ++  
Sbjct: 150 KACAAARAGEEGRQAHGVAVKVGAAEH-EYVLPT---LINMYAECGDARAARTMFGRVDG 205

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
             +VS+NA+++A V +    EA                               L LF +M
Sbjct: 206 ECVVSYNAMITAAVRSSRPGEA-------------------------------LVLFREM 234

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
           + +G K         +++CA LGALE GR +H  +     DS +    ALI MY +CG +
Sbjct: 235 QAKGLKLTSVTLISVLSACALLGALELGRWIHEYVRKVQLDSLVKVNTALIDMYGKCGSL 294

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           E A  VF  M + D  +W+ MI A   H  G  AI L+E+M K+GI PD +TFL VL AC
Sbjct: 295 EDAISVFQGMESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYAC 354

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
           +H+GLV EG +YF++M   +G+ PG  HY    DLL R+G+   A + ID LP KP+A +
Sbjct: 355 SHSGLVSEGLQYFDSMR-EFGLVPGIKHYGCVADLLARSGQLDRAYEFIDELPIKPTAIL 413

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
           W  LL+ C   G+ DLG Q  E++ +L   H G YV+ SN+ AN GRW++  RVRKLM +
Sbjct: 414 WRTLLSACGSRGDADLGKQVFERILELDDSHGGDYVIFSNLCANTGRWEEMNRVRKLMNE 473

Query: 650 RGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLH- 708
           +GV K PGCS IEVDN+VH F   D  HP++    + ++ ++ +++  GYVP+T  V H 
Sbjct: 474 KGVVKVPGCSSIEVDNRVHEFFAGDGRHPKSLDARRMVDGVIEQLKLAGYVPNTSHVFHV 533

Query: 709 DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREI 768
           +M  ++K  +L  HSEKLA++FGL+    G T+RV+KNLR+C DCH+  K +S V  R I
Sbjct: 534 EMGEEEKAVSLRYHSEKLAISFGLLNTSPGTTLRVVKNLRVCPDCHSMAKLVSMVFNRRI 593

Query: 769 VVRDGKRFHHFRDGKCSCGDYW 790
           ++RD  RFHHF DG CSCGDYW
Sbjct: 594 ILRDLNRFHHFEDGVCSCGDYW 615



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 119/501 (23%), Positives = 200/501 (39%), Gaps = 113/501 (22%)

Query: 25  PRNPITSSLARSVHAHMISSGFKPREHIINRLIDI-----YCKSLKLVYARTLFDEIPQP 79
           P+     +LA+ +HA  + SG +     + RL+ +       K  +L YAR +FD IP P
Sbjct: 39  PQCTTLRALAQ-LHAAAVKSGLQAHPAFVTRLLTLCTDQGAAKPAQLSYARQVFDRIPGP 97

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNG-------HA 132
                                            D V+YN ++  Y+  S           
Sbjct: 98  G--------------------------------DVVWYNTLLRGYARCSAAGGARPPAEE 125

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           A  +F  M  + V PD +TF S+L A A     E +  Q H   VK G      VL  LI
Sbjct: 126 AARVFVRMLEEGVAPDTYTFVSLLKACAAARAGE-EGRQAHGVAVKVGAAEHEYVLPTLI 184

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
           ++Y +C  +          AAR +F  +     +S+  M+T  V++              
Sbjct: 185 NMYAECGDAR---------AARTMFGRVDGECVVSYNAMITAAVRSSR------------ 223

Query: 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTE 312
                   AL+   + RE++   L+  L   T  SV+SACA  G   LG+ +H Y+ + +
Sbjct: 224 -----PGEALV---LFREMQAKGLK--LTSVTLISVLSACALLGALELGRWIHEYVRKVQ 273

Query: 313 AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAK 372
                   + VN AL+ +Y KCG + +A  +F  M  RD  +W+ ++ AY +     EA 
Sbjct: 274 LDSL----VKVNTALIDMYGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANHSYGREAI 329

Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
           SLFE M+++ +                               KP D  F G + +C+  G
Sbjct: 330 SLFEEMKKQGI-------------------------------KPDDVTFLGVLYACSHSG 358

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMI 491
            +  G Q    +   G    +     +  + AR G ++ A    + +P    ++ W  ++
Sbjct: 359 LVSEGLQYFDSMREFGLVPGIKHYGCVADLLARSGQLDRAYEFIDELPIKPTAILWRTLL 418

Query: 492 AALGQHGNGARAIELYEQMLK 512
           +A G  G+     +++E++L+
Sbjct: 419 SACGSRGDADLGKQVFERILE 439



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 16/129 (12%)

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC-----VFNTM 479
           +  C  L AL    QLHA  V SG  +  +    L+T+    G  + A       VF+ +
Sbjct: 38  LPQCTTLRALA---QLHAAAVKSGLQAHPAFVTRLLTLCTDQGAAKPAQLSYARQVFDRI 94

Query: 480 PNVDSVSW-NAMI-------AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
           P    V W N ++       AA G       A  ++ +ML+EG+ PD  TF+++L AC  
Sbjct: 95  PGPGDVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLEEGVAPDTYTFVSLLKACAA 154

Query: 532 AGLVKEGRR 540
           A   +EGR+
Sbjct: 155 ARAGEEGRQ 163


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/511 (38%), Positives = 304/511 (59%), Gaps = 36/511 (7%)

Query: 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
           DE T  S++ ACA  G    GK +H+Y      +   + +L VNNA++ +Y KC      
Sbjct: 10  DEVTMVSLVPACAQLGNLERGKLLHSY----SKELGLDENLSVNNAILDMYCKCDD---- 61

Query: 341 RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGE 400
                                      I+ A+ +F  +RE+++LSWT M+SGLA++GY +
Sbjct: 62  ---------------------------IESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQ 94

Query: 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALI 460
           E L LF +M+L   +P +    G +++CA  GAL+ G+ +H  +     +  L    AL+
Sbjct: 95  ESLALFRKMQLHKIEPDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALV 154

Query: 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI 520
            MYA+CG ++ A  VF  M   +  +WNAMI  L  HG+G  AI L++QM  + ++PD +
Sbjct: 155 DMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDV 214

Query: 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580
           TF+ +L AC+HAGLV EG   F+ M   + I P  +HY   +DLLCRA K  +A   I++
Sbjct: 215 TFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIEN 274

Query: 581 LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA 640
           +P K ++ +W  LL  CR  G+ DL  +   ++ +L P   G YV+LSN+YA + +WD A
Sbjct: 275 MPIKANSVLWATLLGACRSGGHFDLAEKIXRRVIELEPDSCGRYVMLSNLYAGVSQWDHA 334

Query: 641 ARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMR-KLGY 699
            ++RK M+++G++K PGCSWIE++  +H F+  D +H + + +Y  +E++   +    G+
Sbjct: 335 LKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGH 394

Query: 700 VPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKF 759
           VP T  VL D+E ++KE++L  HSEKLA+A GL+  P G+ +R++KNLR+C DCH+  K 
Sbjct: 395 VPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKV 454

Query: 760 MSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            SKV  REIV RD  RFHHF++G CSC D+W
Sbjct: 455 TSKVYNREIVARDRSRFHHFKEGSCSCMDFW 485



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 168/398 (42%), Gaps = 89/398 (22%)

Query: 141 RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVS 200
           + D+++PD  T  S++ A A +   E+  + +H    + G     SV NA++ +Y KC  
Sbjct: 3   KLDNLRPDEVTMVSLVPACAQLGNLERGKL-LHSYSKELGLDENLSVNNAILDMYCKCDD 61

Query: 201 SPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWN 260
                    + +A+ VF+ + E+D LSWT+M++G  K+ Y   +                
Sbjct: 62  ---------IESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFR----------- 101

Query: 261 ALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS 320
                      KM + +I+ DE T   V+SACA +G    GK +H  + + E        
Sbjct: 102 -----------KMQLHKIEPDEITLVGVLSACAQTGALDQGKYIHLLIDKFEIN----CD 146

Query: 321 LPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE 380
           L +  ALV +Y KCG ++ A  +F +M  R++ +WNA++                     
Sbjct: 147 LVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGG------------------- 187

Query: 381 RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG-------- 432
                       LA +G+GE+ + LF QM  +   P D  F   + +C+  G        
Sbjct: 188 ------------LAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAM 235

Query: 433 --ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNA 489
             A++N  Q+  ++ H G          ++ +  R   V+ A      MP   +SV W  
Sbjct: 236 FQAMKNKFQIEPRMEHYG---------CVVDLLCRARKVDDALAFIENMPIKANSVLWAT 286

Query: 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
           ++ A    G+   A ++  ++++  + PD      +LS
Sbjct: 287 LLGACRSGGHFDLAEKIXRRVIE--LEPDSCGRYVMLS 322



 Score =  107 bits (266), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 120/243 (49%), Gaps = 5/243 (2%)

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
           +L+  +P +      + +CA LG LE G+ LH+     G D +LS  NA++ MY +C  +
Sbjct: 3   KLDNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDI 62

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
           E+A  VFN +   D +SW +M++ L + G    ++ L+ +M    I PD IT + VLSAC
Sbjct: 63  ESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSAC 122

Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
              G + +G +Y   +   + I          +D+  + G    A  V   +  + +   
Sbjct: 123 AQTGALDQG-KYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR-NVFT 180

Query: 590 WEALLAGCRIHGNIDLGIQAAEQLF--QLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647
           W A++ G  +HG+ +  I   +Q+   +LMP    T++ L    ++ G  D+   + + M
Sbjct: 181 WNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDV-TFIALLCACSHAGLVDEGLAMFQAM 239

Query: 648 RDR 650
           +++
Sbjct: 240 KNK 242



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 145/340 (42%), Gaps = 41/340 (12%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           ++     ++  Y   D+++ A+E+FN+  ++ +D + + +M++  + +     ++ LFR 
Sbjct: 45  NLSVNNAILDMYCKCDDIESAQEVFNR--IREKDVLSWTSMLSGLAKSGYFQESLALFRK 102

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M+   ++PD  T   VLSA A     + Q   +H  + K        +  AL+ +Y KC 
Sbjct: 103 MQLHKIEPDEITLVGVLSACAQTGALD-QGKYIHLLIDKFEINCDLVLETALVDMYAKCG 161

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
           S         +  A +VF  M  R+  +W  M+ G   + + + A    D M  +     
Sbjct: 162 S---------IDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXD----- 207

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
                            ++  D+ T+ +++ AC+++GL   G    A     + K   E 
Sbjct: 208 -----------------KLMPDDVTFIALLCACSHAGLVDEGL---AMFQAMKNKFQIEP 247

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAM 378
            +     +V L  +  KV++A      MP + + V W  +L A  S G  D A+ +   +
Sbjct: 248 RMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIXRRV 307

Query: 379 RERNLLSWT--VMISGL-AQNGYGEEGLKLFSQMRLEGFK 415
            E    S    VM+S L A     +  LKL  QM+ +G +
Sbjct: 308 IELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIE 347


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/639 (35%), Positives = 342/639 (53%), Gaps = 59/639 (9%)

Query: 167 KQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDEL 226
           KQ +Q+ C         F  ++N+       C+    +S    +    R+     ++D  
Sbjct: 60  KQAVQLLCCEPNPTKKTFELLINS-------CIEQNSLSDG--VDVHHRLVGSGLDQDPY 110

Query: 227 SWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV--HRELKMLMLRIQLD--- 281
             T ++  Y     +D A +  D   E     WNA+        R   +L+L  Q++   
Sbjct: 111 LATKLINMYCDLGSVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIG 170

Query: 282 ----EFTYTSVISACANSGL----FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
                FTYT V+ AC  S L     R GK++HA++LR   +                   
Sbjct: 171 IPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHGYE------------------- 211

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
            G V+                   +L  Y   G +  A S+F AM ++N++SW+ MI+  
Sbjct: 212 -GHVH---------------VMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACY 255

Query: 394 AQNGYGEEGLKLFSQMRLEGFK--PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
           A+N    + L+LF  M LE     P        + +CA L ALE+G+ +HA ++  G DS
Sbjct: 256 AKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDS 315

Query: 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511
           +L   N LITMY RCG +     VF+ M   D +SWN++I+  G HG G +AI+++E M+
Sbjct: 316 TLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMI 375

Query: 512 KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571
             G+ P  ITF+TVL AC+HAGLV+E +  FE+M   Y I P  +HYA  +D+L RA + 
Sbjct: 376 NRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRL 435

Query: 572 SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631
            EA ++I ++ FKP   +W +LL  CRIH N++L  +A+  LF+L P +AG YVLLS++Y
Sbjct: 436 DEAIELIQNMDFKPGPTVWGSLLGSCRIHCNVELAERASAMLFELEPKNAGNYVLLSHIY 495

Query: 632 ANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLV 691
           A    W+D  RVRK +  RG++K P CSWIEV  K++  +  +  +P+ + +  +L  L+
Sbjct: 496 AKSRMWNDVRRVRKQLESRGLQKIPSCSWIEVKRKIYSLVSIEEYNPQIEELCAFLITLL 555

Query: 692 LEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICG 751
            E++  GYVP T  V +D++ ++KE  +  HS KLAVAFGL+    G  +R+  NLR+C 
Sbjct: 556 TEIKNQGYVPQTNVVTYDLDEEEKERIVLGHSGKLAVAFGLINTSKGEIIRISNNLRLCE 615

Query: 752 DCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           DCH   KF+SK   REI++RD  RFH F+DG CSCGDYW
Sbjct: 616 DCHAFMKFVSKFTNREILLRDVNRFHCFKDGVCSCGDYW 654



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 186/435 (42%), Gaps = 101/435 (23%)

Query: 5   NADYIRTLAN----RYASQLQLCDPRNP--------ITSSLARS-------VHAHMISSG 45
           N D I++L      + A QL  C+P NP        I S + ++       VH  ++ SG
Sbjct: 46  NDDLIQSLCRGGNLKQAVQLLCCEP-NPTKKTFELLINSCIEQNSLSDGVDVHHRLVGSG 104

Query: 46  FKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFN 105
                ++  +LI++YC    + +A  +FDE                         RE   
Sbjct: 105 LDQDPYLATKLINMYCDLGSVDHACKVFDE------------------------TRE--- 137

Query: 106 KTPLKMRDTVF-YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE 164
                   T+F +NA+  A +  S G   + L+  M    +  + FT+T VL A   +V 
Sbjct: 138 -------KTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKAC--VVS 188

Query: 165 EEKQC-----MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDE 219
           E   C      ++H  +++ G      V+  L+ VY +     + SS         VF  
Sbjct: 189 ELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASS---------VFGA 239

Query: 220 MPERDELSWTTMMTGYVKNDY-LDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRI 278
           MP+++ +SW+ M+  Y KN+  + A   F   M E      N +                
Sbjct: 240 MPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPI---------------- 283

Query: 279 QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
                T  SV+ ACA+      GK VHAY+LR     T    LPV N L+T+Y +CG+++
Sbjct: 284 -----TMVSVLQACASLAALEHGKLVHAYVLRRGLDST----LPVLNTLITMYGRCGEIS 334

Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL----LSWTVMISGLA 394
             + +F+ M +RD++SWN+++S Y   GL  +A  +FE M  R +    +++  ++   +
Sbjct: 335 TGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACS 394

Query: 395 QNGYGEEGLKLFSQM 409
             G  EE   LF  M
Sbjct: 395 HAGLVEEAKILFESM 409



 Score = 48.5 bits (114), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 14/105 (13%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
            TLI  Y     +   + +F+   +K RD + +N++I+ Y  +  G  AI++F +M    
Sbjct: 321 NTLITMYGRCGEISTGQRVFDY--MKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRG 378

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLN 189
           V P   TF +VL A +            H  +V+    LF S+LN
Sbjct: 379 VSPSYITFITVLCACS------------HAGLVEEAKILFESMLN 411


>gi|414867973|tpg|DAA46530.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
          Length = 923

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 245/765 (32%), Positives = 394/765 (51%), Gaps = 110/765 (14%)

Query: 32  SLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
           +L   +H+  +SSG      +IN L+++Y  + KL  A +LF  + +             
Sbjct: 263 ALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNMSR------------- 309

Query: 92  SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIE-LFRDMRRDDVKPDNF 150
                               RD + +N MI++Y  +++   A+E L + ++ D+  P++ 
Sbjct: 310 --------------------RDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSM 349

Query: 151 TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLM 210
           TF+S L A +   E       +H  +++        + N+L+++Y KC S         M
Sbjct: 350 TFSSALGACS-SPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNS---------M 399

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVK-NDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
               RVF+ MP  D +S   +  GY    D  +A R F          +W          
Sbjct: 400 EDTERVFESMPCYDVVSCNVLTGGYAALEDVANAMRVF----------SW---------- 439

Query: 270 ELKMLMLRIQLDEFTYTSVISACANSG-LFRLGKQVHAYLLRTEAKPTPEFSLPVNNALV 328
              M    I+ +  T  ++   C + G L   G  +HAY+ +T    + E+   + N+L+
Sbjct: 440 ---MRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQT-GLLSDEY---ITNSLI 492

Query: 329 TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTV 388
           T+Y  CG +  +  IF+++  + ++SWNAI++A V                         
Sbjct: 493 TMYATCGDLESSTGIFSRINNKSVISWNAIIAANV------------------------- 527

Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG 448
                 ++G GEE +KLF   +  G K   +  A  ++S A L +LE G QLH   V +G
Sbjct: 528 ------RHGRGEEAIKLFMDSQHAGNKLDRFCLAECLSSSANLASLEEGMQLHGLSVKNG 581

Query: 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMPNV---DSVSWNAMIAALGQHGNGARAIE 505
            D      NA + MY +CG ++   C+  T+P+     +  WN +I+   ++G    A +
Sbjct: 582 LDCDSHVVNATMDMYGKCGKMD---CMLKTLPDPAHRPTQCWNTLISGYARYGYFKEAED 638

Query: 506 LYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLL 565
            ++ M+  G  PD +TF+ +LSAC+HAGL+ +G  Y+ +M   +G+ PG  H    +DLL
Sbjct: 639 TFKHMVSVGQKPDYVTFVALLSACSHAGLIDKGMDYYNSMAPTFGVSPGIKHCVCIVDLL 698

Query: 566 CRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYV 625
            R GKF+EA+  ID +P  P+  IW +LL+  R H N+D+G +AA+ L +L P     YV
Sbjct: 699 GRLGKFAEAEKFIDEMPVLPNDLIWRSLLSSSRTHKNLDIGRKAAKNLLELDPFDDSAYV 758

Query: 626 LLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYK 685
           LLSN+YA   RW D  ++R  M+   + K P CSW+++ N+V  F + D +H  A+ +Y 
Sbjct: 759 LLSNLYATNARWVDVDKLRSHMKTIKLNKRPACSWLKLKNEVSTFGIGDRSHMHAEKIYV 818

Query: 686 YLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLK 745
            L++++L++R++GYV DT   LHD + +QKE+ L  HSEKLA+A+GL+ +P G+T+R+ K
Sbjct: 819 KLDEILLKLREVGYVADTSSALHDTDEEQKEHNLWNHSEKLALAYGLLVVPEGSTIRIFK 878

Query: 746 NLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           NLR+C DCH  FK +S V  REIV+RD  RFH F+ G CSC D+W
Sbjct: 879 NLRVCADCHLVFKLVSMVFHREIVLRDPYRFHQFKHGSCSCSDFW 923



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 164/637 (25%), Positives = 252/637 (39%), Gaps = 151/637 (23%)

Query: 13  ANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTL 72
           AN  A+ + LC       + L   V AH++ SG      + N LI ++    ++  A  L
Sbjct: 145 ANALATVVSLCGALEDEVAGL--QVTAHVVVSGLLTHVSVANSLITMFGNLRRVQDAERL 202

Query: 73  FDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHA 132
           FD + +                                 RD + +NAMI+ YSH      
Sbjct: 203 FDRMEE---------------------------------RDRISWNAMISMYSHEEVYSK 229

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALA---LIVEEEKQCMQMHCTVVKSGTGLFTSVLN 189
              +  DMR  +VKPD  T  S++S  A   L+         +H   V SG      ++N
Sbjct: 230 CFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVALGSG----IHSLCVSSGLHCSVPLIN 285

Query: 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD 249
           AL+++Y         S+   +  A  +F  M  RD +SW TM++ YV+++    A E L 
Sbjct: 286 ALVNMY---------STAGKLDEAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLG 336

Query: 250 GMSENVGVAWNALISGYVHRELKMLMLRIQLDE-----FTYTSVISACANSGLFRLGKQV 304
            +                          +Q DE      T++S + AC++      G+ +
Sbjct: 337 QL--------------------------LQTDEGPPNSMTFSSALGACSSPEALMNGRTI 370

Query: 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVS 364
           HA +L+   +      L + N+L+T+Y KC  + +   +F  MP  D+VS N +   Y  
Sbjct: 371 HAMILQRSLQNV----LLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGY-- 424

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
           A L D A +                             +++FS MR  G KP        
Sbjct: 425 AALEDVANA-----------------------------MRVFSWMRGTGIKPNYITMINL 455

Query: 425 ITSCAGLGALEN-GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
             +C  LG L + G  LHA +  +G  S     N+LITMYA CG +E++  +F+ + N  
Sbjct: 456 QGTCKSLGDLHSYGMPLHAYVTQTGLLSDEYITNSLITMYATCGDLESSTGIFSRINNKS 515

Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFE 543
            +SWNA+IAA  +HG G  AI+L+      G   DR      LS+  +   ++EG +   
Sbjct: 516 VISWNAIIAANVRHGRGEEAIKLFMDSQHAGNKLDRFCLAECLSSSANLASLEEGMQLHG 575

Query: 544 ------------------TMHGPYG-------IPPGEDH-----YARFIDLLCRAGKFSE 573
                              M+G  G         P   H     +   I    R G F E
Sbjct: 576 LSVKNGLDCDSHVVNATMDMYGKCGKMDCMLKTLPDPAHRPTQCWNTLISGYARYGYFKE 635

Query: 574 AKDVID---SLPFKPSAPIWEALLAGCRIHGNIDLGI 607
           A+D      S+  KP    + ALL+ C   G ID G+
Sbjct: 636 AEDTFKHMVSVGQKPDYVTFVALLSACSHAGLIDKGM 672



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 140/533 (26%), Positives = 226/533 (42%), Gaps = 87/533 (16%)

Query: 85  TTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD 144
           T L+  Y +   V  A+ +F + P   R+ V + A++ A S N     A+  +R MR++ 
Sbjct: 83  TALLHLYGSRGLVLNAQRLFWEMP--QRNVVSWTAIMVALSSNGCMEEALVAYRRMRKEG 140

Query: 145 VKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           V  +     +V+S L   +E+E   +Q+   VV SG     SV N+LI+++         
Sbjct: 141 VMCNANALATVVS-LCGALEDEVAGLQVTAHVVVSGLLTHVSVANSLITMF--------- 190

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
            +   +  A R+FD M ERD +S                               WNA+IS
Sbjct: 191 GNLRRVQDAERLFDRMEERDRIS-------------------------------WNAMIS 219

Query: 265 GYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
            Y H E+          M    ++ D  T  S++S CA+S L  LG  +H+  + +    
Sbjct: 220 MYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGL-- 277

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
               S+P+ NALV +Y   GK++EA  +F  M  RD++SWN ++S+YV      ++ S  
Sbjct: 278 --HCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMISSYV------QSNSCV 329

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
           EA+              L Q    +EG             P    F+ A+ +C+   AL 
Sbjct: 330 EALET------------LGQLLQTDEG------------PPNSMTFSSALGACSSPEALM 365

Query: 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG 495
           NGR +HA ++     + L  GN+L+TMY++C  +E    VF +MP  D VS N +     
Sbjct: 366 NGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGYA 425

Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
              + A A+ ++  M   GI P+ IT + +   C   G +              G+   E
Sbjct: 426 ALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGLLSDE 485

Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
                 I +    G    +  +   +  K S   W A++A    HG  +  I+
Sbjct: 486 YITNSLITMYATCGDLESSTGIFSRINNK-SVISWNAIIAANVRHGRGEEAIK 537



 Score =  108 bits (271), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 105/411 (25%), Positives = 170/411 (41%), Gaps = 71/411 (17%)

Query: 133 AIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL--NA 190
           A  L R MR  DV    F   S+++A      +E          +    GL  +V    A
Sbjct: 25  AFTLLRVMRERDVPLSGFALASLVTACEHRGWQEGAACGAAIHALTHRAGLMGNVYIGTA 84

Query: 191 LISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDG 250
           L+ +Y          SR L+  A+R+F EMP+R+ +SWT +M     N           G
Sbjct: 85  LLHLY---------GSRGLVLNAQRLFWEMPQRNVVSWTAIMVALSSN-----------G 124

Query: 251 MSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310
             E   VA+            +M    +  +     +V+S C        G QV A+++ 
Sbjct: 125 CMEEALVAYR-----------RMRKEGVMCNANALATVVSLCGALEDEVAGLQVTAHVVV 173

Query: 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDE 370
           +         + V N+L+T++    +V +A  +F++M ERD +SWNA++S Y    +  +
Sbjct: 174 SGLLT----HVSVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSK 229

Query: 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG 430
              +   MR                  +GE              KP        ++ CA 
Sbjct: 230 CFIVLSDMR------------------HGE-------------VKPDVTTLCSLVSVCAS 258

Query: 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAM 490
              +  G  +H+  V SG   S+   NAL+ MY+  G ++ A  +F  M   D +SWN M
Sbjct: 259 SDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDVISWNTM 318

Query: 491 IAALGQHGNGARAIELYEQMLK--EGILPDRITFLTVLSACNHAGLVKEGR 539
           I++  Q  +   A+E   Q+L+  EG  P+ +TF + L AC+    +  GR
Sbjct: 319 ISSYVQSNSCVEALETLGQLLQTDEGP-PNSMTFSSALGACSSPEALMNGR 368



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 125/266 (46%), Gaps = 5/266 (1%)

Query: 357 AILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
           A+L  Y S GL+  A+ LF  M +RN++SWT ++  L+ NG  EE L  + +MR EG   
Sbjct: 84  ALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVALSSNGCMEEALVAYRRMRKEGVMC 143

Query: 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476
              A A  ++ C  L     G Q+ A +V SG  + +S  N+LITM+     V+ A  +F
Sbjct: 144 NANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHVSVANSLITMFGNLRRVQDAERLF 203

Query: 477 NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536
           + M   D +SWNAMI+        ++   +   M    + PD  T  +++S C  + LV 
Sbjct: 204 DRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVA 263

Query: 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAG 596
            G     ++    G+          +++   AGK  EA+ +  ++  +     W  +++ 
Sbjct: 264 LGSG-IHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNMS-RRDVISWNTMISS 321

Query: 597 CRIHGNIDLGIQAAEQLFQLMPHHAG 622
              +   +  ++A E L QL+    G
Sbjct: 322 ---YVQSNSCVEALETLGQLLQTDEG 344



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 71/155 (45%), Gaps = 3/155 (1%)

Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN- 436
           M  R   SW   +SG A+ G       L   MR        +A A  +T+C   G  E  
Sbjct: 1   MPHRTSSSWYTAVSGCARCGLESTAFTLLRVMRERDVPLSGFALASLVTACEHRGWQEGA 60

Query: 437 --GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAAL 494
             G  +HA    +G   ++  G AL+ +Y   G+V  A  +F  MP  + VSW A++ AL
Sbjct: 61  ACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVAL 120

Query: 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
             +G    A+  Y +M KEG++ +     TV+S C
Sbjct: 121 SSNGCMEEALVAYRRMRKEGVMCNANALATVVSLC 155


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/479 (42%), Positives = 293/479 (61%), Gaps = 4/479 (0%)

Query: 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA 340
           D FT +SV+ AC N      G+ +H  + +   +     +L + N +V LY  CG++ EA
Sbjct: 127 DTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRS----NLYLQNMIVHLYASCGEMGEA 182

Query: 341 RDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGE 400
           R +F +MP+RD+V+WN +++  +  G  + A  LF  M ERN+ SWT MI+G  Q G  +
Sbjct: 183 RLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAK 242

Query: 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALI 460
           E + LF++M   G K  +      + +CA LGAL+ G ++H      G+  ++   N LI
Sbjct: 243 EAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLI 302

Query: 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI 520
            MY +CG +E A  VF  M     VSW+AMI  L  HG    A+ L+  M + GI P+ +
Sbjct: 303 DMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGV 362

Query: 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580
           TF+ +L AC+H GL+ EGRR+F +M   YGI P  +HY   +DLL RAG   EA + I +
Sbjct: 363 TFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILN 422

Query: 581 LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA 640
           +P KP+  +W ALL  CR+H N+++  +A + L +L P + G YV+LSN+YA  GRW+D 
Sbjct: 423 MPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDT 482

Query: 641 ARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYV 700
           ARVRK M+DR VKK PG S I VD  VH F+  + +HP+ + +++  E+L+ EMR  GYV
Sbjct: 483 ARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYV 542

Query: 701 PDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKF 759
           P+T  VL D+E  +K   +S HSEKLA+ FGLM  P    +R++KNLRIC DCH+AF+ 
Sbjct: 543 PNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFQI 601



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/467 (26%), Positives = 215/467 (46%), Gaps = 59/467 (12%)

Query: 64  LKLVYARTLFDEIPQPDI-VARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
           L+ V+A+ +    P   + + R  L+ A++ S     A+++F     +  +T  +N+ + 
Sbjct: 44  LRQVHAQIIKTNAPLSILPLTRVGLVCAFTPS--FHYAQQIFECVEKQKPETFVWNSCLK 101

Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTG 182
           A +   +   AI LF  +R+ DV PD FT +SVL A   +++     + +H  V K G  
Sbjct: 102 ALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRI-LHGVVEKVGFR 160

Query: 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLD 242
               + N ++ +Y  C           MG AR +F++MP+RD ++W  M+   +K    +
Sbjct: 161 SNLYLQNMIVHLYASC---------GEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHE 211

Query: 243 AAREFLDGMSENVGVAWNALISGYV---------HRELKMLMLRIQLDEFTYTSVISACA 293
            A +    M E    +W ++I+GYV         H   KM    ++ +E T  +V++ACA
Sbjct: 212 GAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACA 271

Query: 294 NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV 353
           + G   LG ++H Y  R   K     ++ ++N L+ +Y KCG + EA  +F +M ER +V
Sbjct: 272 DLGALDLGMRIHEYSNRHGFKR----NVRISNTLIDMYVKCGCLEEACKVFEEMEERTVV 327

Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
           SW+A                               MI GLA +G  EE L+LFS M   G
Sbjct: 328 SWSA-------------------------------MIGGLAMHGRAEEALRLFSDMSQVG 356

Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAA 472
            +P    F G + +C+ +G +  GR+  A +    G    +     ++ + +R G++  A
Sbjct: 357 IEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEA 416

Query: 473 NCVFNTMP-NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
           +     MP   + V W A++ A   H N   A E  + +L+   L D
Sbjct: 417 HEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLND 463



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 150/336 (44%), Gaps = 38/336 (11%)

Query: 27  NPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTT 86
           N +  S  R +H  +   GF+   ++ N ++ +Y    ++  AR LF+++PQ D+V    
Sbjct: 140 NLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNI 199

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           +IA      + + A ++F++ P   R+   + +MI  Y        AI LF  M    VK
Sbjct: 200 MIAQLIKQGDHEGAYDLFSRMP--ERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVK 257

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
            +  T  +VL+A A +   +   M++H    + G      + N LI +YVKC        
Sbjct: 258 CNEVTVVAVLAACADLGALDLG-MRIHEYSNRHGFKRNVRISNTLIDMYVKC-------- 308

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266
              +  A +VF+EM ER  +SW+ M+ G   +   + A      MS+ VG+  N +    
Sbjct: 309 -GCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQ-VGIEPNGV---- 362

Query: 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNA 326
                            T+  ++ AC++ GL   G++  A + R +    P+  +     
Sbjct: 363 -----------------TFIGLLHACSHMGLISEGRRFFASMTR-DYGIIPQ--IEHYGC 402

Query: 327 LVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
           +V L  + G ++EA +    MP + + V W A+L A
Sbjct: 403 MVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGA 438


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 233/657 (35%), Positives = 349/657 (53%), Gaps = 82/657 (12%)

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M R  ++PDNFTF  ++ A + +   E   +++H  VVK G      + N+LI++Y KC 
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFG-IRIHQDVVKFGYQSQVFISNSLITMYGKC- 58

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                                                  D  + +R+  D M +   V+W
Sbjct: 59  ---------------------------------------DKYELSRQVFDEMPDKNAVSW 79

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
           +A                          +I AC      + G  +   +L   ++P+   
Sbjct: 80  SA--------------------------IIGACLQDDRCKEGFSLFRQMLSEGSRPSRGA 113

Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA----YVSAGLIDEAKSLF 375
            L   NA+  +        EA D++  + E  L    ++ SA    +   G ++ A+ LF
Sbjct: 114 IL---NAMACVRSH----EEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLF 166

Query: 376 EAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435
           + +  ++L++W   I    +     E L L  QM L+G  P      G I +C+ L + +
Sbjct: 167 DGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQ 226

Query: 436 NGRQLHAQLVHSG--YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493
               +H  ++ +G  Y+  L+   ALI +Y +CG +  A  VF+ M   + ++W+AMI+ 
Sbjct: 227 LAHIVHG-IITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISG 285

Query: 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553
            G HG G  A+ L++QM K  + PD ITF+++LSAC+H+GLV EG   F +M   +G+ P
Sbjct: 286 YGMHGWGREALNLFDQM-KASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTP 344

Query: 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613
             +HYA  +D+L RAGK  EA D I+ +P +P+A +W ALL  CRIH N+DL    A  L
Sbjct: 345 RPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARAL 404

Query: 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVD 673
           F L PH+AG YV+L N+Y   G+  +A  +R LM++RGVKK  G S IE+ NK++ F+  
Sbjct: 405 FDLDPHNAGRYVILYNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAG 464

Query: 674 DTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLM 733
           D +HP+   +Y  LE+L+  +R+ GY PD  FVLHD++ + KE  L  HSEKLA+ FGL+
Sbjct: 465 DRSHPQTDLIYSELERLMDRIRQEGYTPDINFVLHDVDEETKESMLYLHSEKLAIVFGLL 524

Query: 734 KLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
            L  G+ +R+ KNLR+CGDCH A KF+SKV GREIVVRD  RFHHF++G CSC DYW
Sbjct: 525 NLGPGSVIRIRKNLRVCGDCHTATKFISKVTGREIVVRDAHRFHHFKNGACSCRDYW 581



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 166/381 (43%), Gaps = 84/381 (22%)

Query: 37  VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDN 96
           +H  ++  G++ +  I N LI +Y K  K   +R +FDE+P  + V+ + +I A    D 
Sbjct: 32  IHQDVVKFGYQSQVFISNSLITMYGKCDKYELSRQVFDEMPDKNAVSWSAIIGACLQDDR 91

Query: 97  VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVL 156
            K                                     LFR M  +  +P      ++L
Sbjct: 92  CK---------------------------------EGFSLFRQMLSEGSRPSR---GAIL 115

Query: 157 SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216
           +A+A +   E +   ++  VV++G     SV +A   ++ +C           +  AR++
Sbjct: 116 NAMACVRSHE-EADDVYRVVVENGLDFDQSVQSAAAGMFARC---------GRVEVARKL 165

Query: 217 FDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLML 276
           FD +  +D ++W T +  YVK D             E +G+             LK +ML
Sbjct: 166 FDGIMSKDLVTWATTIEAYVKADM----------PLEALGL-------------LKQMML 202

Query: 277 R-IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS----LPVNNALVTLY 331
           + I  D  T   VI AC+    F+L   VH  +       T  F     L V  AL+ LY
Sbjct: 203 QGIFPDAITLLGVIRACSTLASFQLAHIVHGII-------TTGFFYNQLLAVETALIDLY 255

Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR---ERNLLSWTV 388
            KCG +  AR +F+ M ER++++W+A++S Y   G   EA +LF+ M+   + + +++  
Sbjct: 256 VKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQMKASVKPDHITFVS 315

Query: 389 MISGLAQNGYGEEGLKLFSQM 409
           ++S  + +G   EG + F+ M
Sbjct: 316 ILSACSHSGLVAEGWECFNSM 336



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 142/333 (42%), Gaps = 49/333 (14%)

Query: 36  SVHAHMISSGFKP-REHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
           S+   M+S G +P R  I+N +  +          R + +     D   ++     ++  
Sbjct: 97  SLFRQMLSEGSRPSRGAILNAMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARC 156

Query: 95  DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
             V++AR++F+   +  +D V +   I AY        A+ L + M    + PD  T   
Sbjct: 157 GRVEVARKLFDG--IMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLG 214

Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLF----TSVLNALISVYVKCVSSPFVSSRSLM 210
           V+ A + +   +   + +H  +    TG F     +V  ALI +YVKC S  +       
Sbjct: 215 VIRACSTLASFQLAHI-VHGIIT---TGFFYNQLLAVETALIDLYVKCGSLTY------- 263

Query: 211 GAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270
             AR+VFD M ER+ ++W+ M++GY  + +   A    D M  +V               
Sbjct: 264 --ARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQMKASV--------------- 306

Query: 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT-EAKPTPEFSLPVNNALVT 329
                   + D  T+ S++SAC++SGL   G +    + R     P PE        +V 
Sbjct: 307 --------KPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHY----ACMVD 354

Query: 330 LYWKCGKVNEARDIFNQMPER-DLVSWNAILSA 361
           +  + GK++EA D   +MP R +   W A+L A
Sbjct: 355 ILGRAGKLDEACDFIERMPVRPNAAVWGALLGA 387


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 232/622 (37%), Positives = 331/622 (53%), Gaps = 67/622 (10%)

Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS-WT 229
           Q+H  ++ SGTGL   +   L+ +Y  C           +  ARRVFDEMP +  +  W 
Sbjct: 89  QLHARLLVSGTGLDAVLATRLVDLYASC---------GHVSLARRVFDEMPNQGNVFLWN 139

Query: 230 TMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVI 289
            ++  Y ++   +AA E    M     +A+ ++                + D FTY  V+
Sbjct: 140 VLIRAYARDGPCEAAIELYRAM-----LAYGSM----------------KPDNFTYPPVL 178

Query: 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349
            ACA       G++VH  ++RT                          N A D+F     
Sbjct: 179 KACAALLDLSAGREVHDRVMRT--------------------------NWATDVF----- 207

Query: 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409
                   ++  Y   G +DEA ++F     R+   W  MI+   QNG   E L L   M
Sbjct: 208 ----VCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQNGRPAEALTLCRNM 263

Query: 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
             EG  P       AI++ A   AL  GR+LH      G+ S      +L+ MYA+ G V
Sbjct: 264 AAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWV 323

Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG-ILPDRITFLTVLSA 528
             A+ +F  + + + +SWNAMI   G HG+   A EL+ +M  E  ++PD ITF+ VLSA
Sbjct: 324 MVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRSEAQVMPDHITFVGVLSA 383

Query: 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP 588
           CNH G+V+E +  F+ M   Y I P   HY   +D+L  +G+F EA DVI  +  KP + 
Sbjct: 384 CNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSG 443

Query: 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648
           IW ALL GC+IH N++L   A ++L +L P  AG YVLLSN+YA  G+W++AARVRKLM 
Sbjct: 444 IWGALLNGCKIHKNVELAELALQKLIELEPEDAGNYVLLSNIYAESGKWEEAARVRKLMT 503

Query: 649 DRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLH 708
           +RG+KK   CSWIE+  K H FLV D +HP +  +Y+ LE+L   + + GYVPDT  V H
Sbjct: 504 NRGLKKIIACSWIELKGKFHGFLVGDASHPRSDDIYEELERLEGLISQTGYVPDTTPVFH 563

Query: 709 DMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREI 768
           ++E D+K   +  HSE+LA+AFGL+  P    + V KNLR+C DCH   K +S++  REI
Sbjct: 564 NVEDDEKRNMVWGHSERLAIAFGLISTPPRTKLLVTKNLRVCEDCHVVIKLISQIEQREI 623

Query: 769 VVRDGKRFHHFRDGKCSCGDYW 790
           ++RD  R+HHF +G+CSC D+W
Sbjct: 624 IIRDVNRYHHFVNGECSCKDHW 645



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 109/507 (21%), Positives = 191/507 (37%), Gaps = 111/507 (21%)

Query: 14  NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLF 73
           + YA+ L+ C     +     R +HA ++ SG      +  RL+D+Y     +  AR +F
Sbjct: 69  SNYATILRSCVLSRAVRP--GRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVF 126

Query: 74  DEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133
           DE+P                                   +   +N +I AY+ +    AA
Sbjct: 127 DEMPNQG--------------------------------NVFLWNVLIRAYARDGPCEAA 154

Query: 134 IELFRDM-RRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI 192
           IEL+R M     +KPDNFT+  VL A A +++      ++H  V+++       V   LI
Sbjct: 155 IELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSAG-REVHDRVMRTNWATDVFVCTGLI 213

Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM- 251
            +Y KC           M  A  VF++   RD   W +M+    +N     A      M 
Sbjct: 214 DMYAKC---------GCMDEAWAVFNDTTIRDAAVWNSMIAACGQNGRPAEALTLCRNMA 264

Query: 252 SENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311
           +E +      L+S      +   + R                       G+++H Y  R 
Sbjct: 265 AEGIAPTIATLVSAISAAAVASALPR-----------------------GRELHGYGWRR 301

Query: 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEA 371
                 +    +  +L+ +Y K G V  A  +F Q+  R+L+SWNA++  +         
Sbjct: 302 GFGSQDK----LKTSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGF--------- 348

Query: 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG-FKPCDYAFAGAITSCAG 430
                                   +G+ +   +LFS+MR E    P    F G +++C  
Sbjct: 349 ----------------------GMHGHADHAFELFSRMRSEAQVMPDHITFVGVLSACNH 386

Query: 431 LGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCG-VVEAANCVFNTMPNVDSVSWN 488
            G ++  +++   +V       ++     L+ +    G   EA++ +   +   DS  W 
Sbjct: 387 GGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWG 446

Query: 489 AMIAALGQHGNGARAIELYEQMLKEGI 515
           A++     H N    +EL E  L++ I
Sbjct: 447 ALLNGCKIHKN----VELAELALQKLI 469



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 88/186 (47%), Gaps = 10/186 (5%)

Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
           +A  + SC    A+  GRQLHA+L+ SG          L+ +YA CG V  A  VF+ MP
Sbjct: 71  YATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDEMP 130

Query: 481 NVDSVS-WNAMIAALGQHGNGARAIELYEQMLKEGIL-PDRITFLTVLSACNHAGLVKEG 538
           N  +V  WN +I A  + G    AIELY  ML  G + PD  T+  VL AC     +  G
Sbjct: 131 NQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSAG 190

Query: 539 RRYFE-TMHGPYGIPPGEDHY--ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLA 595
           R   +  M   +      D +     ID+  + G   EA  V +    + +A +W +++A
Sbjct: 191 REVHDRVMRTNWAT----DVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAA-VWNSMIA 245

Query: 596 GCRIHG 601
            C  +G
Sbjct: 246 ACGQNG 251



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 139/341 (40%), Gaps = 42/341 (12%)

Query: 80  DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
           D+   T LI  Y+    +  A  +FN T   +RD   +N+MI A   N     A+ L R+
Sbjct: 205 DVFVCTGLIDMYAKCGCMDEAWAVFNDT--TIRDAAVWNSMIAACGQNGRPAEALTLCRN 262

Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCV 199
           M  + + P   T  S +SA A+     +   ++H    + G G    +  +L+ +Y K  
Sbjct: 263 MAAEGIAPTIATLVSAISAAAVASALPRG-RELHGYGWRRGFGSQDKLKTSLLDMYAK-- 319

Query: 200 SSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259
                     +  A  +F+++  R+ +SW  M+ G+  + + D A E    M        
Sbjct: 320 -------SGWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRSEA---- 368

Query: 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEA-KPTPE 318
                            ++  D  T+  V+SAC + G+ +  K+V   ++   + KPT +
Sbjct: 369 -----------------QVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQ 411

Query: 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILSA---YVSAGLIDEAKSL 374
                   LV +    G+  EA D+   M  + D   W A+L+    + +  L + A   
Sbjct: 412 HY----TCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALQK 467

Query: 375 FEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415
              +   +  ++ ++ +  A++G  EE  ++   M   G K
Sbjct: 468 LIELEPEDAGNYVLLSNIYAESGKWEEAARVRKLMTNRGLK 508


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/515 (41%), Positives = 314/515 (60%), Gaps = 14/515 (2%)

Query: 283 FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK---VNE 339
           F++T +++     G  + G+ V A  L    +   E  LP   AL+     CG    +++
Sbjct: 108 FSWTMLMA-----GFVQSGRGVEAIQLFH--RMCQEGELPDRVALLKFIDSCGAAKALSQ 160

Query: 340 ARDIFNQMP----ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQ 395
            R+I +       + DLV+ NAI++ Y   G I EA ++F  M E+N++SW+ MI+   Q
Sbjct: 161 GREIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQ 220

Query: 396 NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSA 455
           N   +E L  F  M+ EG +     +   + +   +GALE G+ LH ++V++G D+S+  
Sbjct: 221 NELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKALHVRIVYAGLDTSIVV 280

Query: 456 GNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI 515
           GN L+ MY +CG  + A  VF++M   + VSWNAM+AA GQ+G    A+ L++ M  EG+
Sbjct: 281 GNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQNGRSREALALFDSMDLEGV 340

Query: 516 LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAK 575
            P+ ITF+T+L  C+H+G  K+   +F  M   +GI P E H+   ID+L R+GK  EA+
Sbjct: 341 RPNDITFVTILYCCSHSGKFKDAVSHFVEMRQDFGITPREVHFGCLIDMLGRSGKLEEAE 400

Query: 576 DVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLG 635
           ++I ++P    A +W +LL  C  H + D   +AAE+ FQ  P  A  Y++LSN+YA L 
Sbjct: 401 ELIQAMPVPADAVLWTSLLCACVTHKDEDRAARAAEEAFQREPRCAAAYIMLSNLYAALK 460

Query: 636 RWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMR 695
           +WD+AA+VRK M   GV+K+ G SWIE+D +VH F+  D+ HP+   ++K L++L+ EMR
Sbjct: 461 KWDEAAKVRKRMEQAGVRKQAGRSWIEIDKQVHEFVAGDSIHPDKSRIFKTLQRLMSEMR 520

Query: 696 KLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHN 755
             GY PD K V+H ME ++K+  L  HSEKLAVAFG+   P    + ++KNLR+C DCH+
Sbjct: 521 IKGYEPDRKVVIHSMEEEEKDEVLFYHSEKLAVAFGIASTPPRTPLCIVKNLRVCSDCHS 580

Query: 756 AFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           A KF+S V GR I VRD  RFHHF  G+CSCGDYW
Sbjct: 581 AIKFISGVEGRRITVRDSNRFHHFDRGECSCGDYW 615



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 118/466 (25%), Positives = 183/466 (39%), Gaps = 102/466 (21%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            R +H  M S        + N L+D+Y K   LV A+ +FD +   ++ + T L+A +  
Sbjct: 60  GRRIHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQ 119

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
           S                                   G  AI+LF  M ++   PD     
Sbjct: 120 S---------------------------------GRGVEAIQLFHRMCQEGELPDRVALL 146

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
             + +     +   Q  ++H      G        NA+I++Y KC S         +G A
Sbjct: 147 KFIDSCG-AAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCGS---------IGEA 196

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
             VF  MPE++ +SW+TM+  + +N+  D A  F   M +                    
Sbjct: 197 FAVFTRMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQE------------------- 237

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
               ++LD  TY SV+ A  + G   LGK +H  ++        + S+ V N LV +Y K
Sbjct: 238 ---GMELDRITYVSVLDAYTSVGALELGKALHVRIVYA----GLDTSIVVGNTLVNMYGK 290

Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393
           CG  ++ARD+F+ M E+++VSWNA+L+AY                               
Sbjct: 291 CGSPDDARDVFDSMVEKNVVSWNAMLAAY------------------------------- 319

Query: 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSS 452
            QNG   E L LF  M LEG +P D  F   +  C+  G  ++      ++    G    
Sbjct: 320 GQNGRSREALALFDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVSHFVEMRQDFGITPR 379

Query: 453 LSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQH 497
                 LI M  R G +E A  +   MP   D+V W +++ A   H
Sbjct: 380 EVHFGCLIDMLGRSGKLEEAEELIQAMPVPADAVLWTSLLCACVTH 425



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 150/309 (48%), Gaps = 39/309 (12%)

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
           +I  CA +     G+++H ++  +     P F   ++N LV +Y KCG            
Sbjct: 47  LIRRCAGAKALEEGRRIHRWM-DSGTLDRPRF---LSNLLVDMYGKCGS----------- 91

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
                               + EAK +F+AM+ +N+ SWT++++G  Q+G G E ++LF 
Sbjct: 92  --------------------LVEAKRVFDAMQHKNVFSWTMLMAGFVQSGRGVEAIQLFH 131

Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467
           +M  EG  P   A    I SC    AL  GR++H+     G DS L   NA+I MY +CG
Sbjct: 132 RMCQEGELPDRVALLKFIDSCGAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCG 191

Query: 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
            +  A  VF  MP  + +SW+ MIAA  Q+     A+  ++ M +EG+  DRIT+++VL 
Sbjct: 192 SIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLD 251

Query: 528 ACNHAGLVKEGRR-YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPS 586
           A    G ++ G+  +   ++   G+          +++  + G   +A+DV DS+  K  
Sbjct: 252 AYTSVGALELGKALHVRIVYA--GLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNV 309

Query: 587 APIWEALLA 595
              W A+LA
Sbjct: 310 VS-WNAMLA 317



 Score = 47.4 bits (111), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 78/164 (47%), Gaps = 3/164 (1%)

Query: 33  LARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYS 92
           L +++H  ++ +G      + N L+++Y K      AR +FD + + ++V+   ++AAY 
Sbjct: 261 LGKALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYG 320

Query: 93  ASDNVKLAREMFNKTPLK--MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRD-DVKPDN 149
            +   + A  +F+   L+    + + +  ++   SH+     A+  F +MR+D  + P  
Sbjct: 321 QNGRSREALALFDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVSHFVEMRQDFGITPRE 380

Query: 150 FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALIS 193
             F  ++  L    + E+    +    V +   L+TS+L A ++
Sbjct: 381 VHFGCLIDMLGRSGKLEEAEELIQAMPVPADAVLWTSLLCACVT 424


>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
          Length = 954

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 246/680 (36%), Positives = 369/680 (54%), Gaps = 46/680 (6%)

Query: 54  NRLIDIYCKSLKLVYARTLFDEIPQPDIVA---RTTLIAA-----YSASDNVKLAREMFN 105
           N ++D +   L+      L  +I    IV    R+  +AA     Y+    V  A+ +F 
Sbjct: 31  NDVLDFFNDLLQQCSKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFE 90

Query: 106 KTPLK-MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE 164
            +P++   + + +N+++ A   +     A+E++  MR+  V  D FTF  V+ A AL+  
Sbjct: 91  VSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALM-G 149

Query: 165 EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERD 224
             K C  +H  VV+ G      V N L+ +Y K            M  AR+VF+ M  R 
Sbjct: 150 SRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKI---------GRMDDARKVFERMAVRS 200

Query: 225 ELSWTTMMTGYVKNDYLDAAREFLD-----GMSENVGVAWNALISGYV----HRELKMLM 275
            +SW TM++GY  N     A E        G+  N+ V W +L+S +     H E   L 
Sbjct: 201 CVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNL-VTWTSLLSSHARCGQHVETMELF 259

Query: 276 LRIQLDEFTYTS-----VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTL 330
            R+++     T+     V+S   +   F  GK +H Y++    K   E  L V N+L+ L
Sbjct: 260 GRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVV----KGGFENYLFVKNSLICL 315

Query: 331 YWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER--------N 382
           Y K G VN AR +F ++  +++VSWNA++S+Y   G  DEA ++F  + +         N
Sbjct: 316 YGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPN 375

Query: 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442
           ++SW+ +I G A  G GEE L+LF +M+L   K      A  ++ CA L AL  GR++H 
Sbjct: 376 VVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHG 435

Query: 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502
            +V S  D ++  GN LI MY + G  +  N VF  + N D +SWN M+A  G HG G  
Sbjct: 436 HVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGEN 495

Query: 503 AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562
           AI  ++QM+K+G  PD +TF+ VLSAC+HAGLV EGR  F+ M   + + P  +HYA  +
Sbjct: 496 AIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMV 555

Query: 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622
           DLL RAG   EA  V+ S+P +P+A +W ALL  CR+H N ++  + A Q+F L    AG
Sbjct: 556 DLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAG 615

Query: 623 TYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQA 682
           +Y+LLSN+YA  GRW+D+A+VR   + +G+KK PG SWI+V  KV++F   +T H E + 
Sbjct: 616 SYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAELEE 675

Query: 683 VYKYLEQLVLEMRKLGYVPD 702
           VY+ L+ L L+M   GY+PD
Sbjct: 676 VYRILKDLGLQMEVEGYIPD 695



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 118/505 (23%), Positives = 230/505 (45%), Gaps = 70/505 (13%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
           +  L RSVH H++  GF+   H+ N L+ +Y K  ++  AR +F+ +     V+  T+++
Sbjct: 150 SRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVS 209

Query: 90  AYSASDNVKLAREMFN--KTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147
            Y+ + +   A EMF    +     + V + +++++++        +ELF  MR   +  
Sbjct: 210 GYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGA 269

Query: 148 DNFTFTSVLS-ALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
                  VLS ++ L   +E +   +H  VVK G   +  V N+LI +Y K         
Sbjct: 270 TAEALAVVLSVSVDLAAFDEGKV--IHGYVVKGGFENYLFVKNSLICLYGK--------- 318

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSE---------NVGV 257
              + AAR +F E+  ++ +SW  +++ Y    + D A      + +         NV V
Sbjct: 319 HGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNV-V 377

Query: 258 AWNALISGYVHR-------EL--KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
           +W+A+I G+  +       EL  +M + +++ +  T  SV+S CA      LG+++H ++
Sbjct: 378 SWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHV 437

Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
           +R+      + ++ V N L+ +Y K G   E   +F ++  +DL+SWN            
Sbjct: 438 VRS----LMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNT----------- 482

Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
                               M++G   +G GE  ++ F QM  +GF+P    F   +++C
Sbjct: 483 --------------------MVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSAC 522

Query: 429 AGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVS 486
           +  G +  GR+L  +++     +  +     ++ +  R G+++ A+ V  +MP   ++  
Sbjct: 523 SHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACV 582

Query: 487 WNAMIAALGQHGNGARAIELYEQML 511
           W A++ +   H N   A E   Q+ 
Sbjct: 583 WGALLNSCRMHKNTEVAEETASQIF 607


>gi|357509743|ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360204|gb|ABN08217.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355500175|gb|AES81378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/626 (35%), Positives = 344/626 (54%), Gaps = 74/626 (11%)

Query: 170 MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWT 229
           +Q+H  ++K G      + + LI+ Y         S   L  ++ ++F + P +   +W+
Sbjct: 40  LQLHAHIIKLGLQTIPLLSHHLINFY---------SKTHLPYSSLQIFHDSPHKSATTWS 90

Query: 230 TMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLR--IQLDEFTYTS 287
           ++++ + +ND                      L+S    R    LMLR  +  D+  + S
Sbjct: 91  SVISSFAQNDL--------------------PLLSLNYFR----LMLRQGVPPDDHIFPS 126

Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
              +C       + K +H + L+T         + V ++++ +Y KCG +  A ++    
Sbjct: 127 ATKSCGILSSLPVAKMLHCFALKTAY----HLDIFVGSSVIDMYAKCGDICYAHNV---- 178

Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
                                      F+ M  RN++SW+ +I G  Q G  +E L+LF 
Sbjct: 179 ---------------------------FDEMPYRNVVSWSGLIYGYVQLGEDDESLRLFK 211

Query: 408 QMRLEGFKPC--DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465
           +  +E       D+  +  +  C G   L+ GR +H     + +DSS    ++LI++Y++
Sbjct: 212 RFLVEEENEGVNDFTLSSVLRVCGGSTLLQMGRLIHGLSFKTSFDSSCFVASSLISLYSK 271

Query: 466 CGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK-EGILPDRITFLT 524
           CGVVE A  VF  +   +   WNAM+ A  QH +  +  EL+++M    G+  + ITFL 
Sbjct: 272 CGVVEEAYDVFEEVTVRNLGMWNAMLIACAQHAHTDKTFELFDKMKSVGGMKANFITFLC 331

Query: 525 VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584
           VL AC+HAGLV++G+ YFE M   YGI PG  HY+  +DLL RAGK ++A  +I+ +P +
Sbjct: 332 VLYACSHAGLVEKGKYYFELMK-DYGIEPGTQHYSTMVDLLGRAGKLNDAVKLIEEMPME 390

Query: 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVR 644
           P+  +W ALL GCR+HGN  L    A+++ +L    +G +V+LSN YA  GRW++AA+ R
Sbjct: 391 PTESVWGALLTGCRLHGNTKLASYVADRVSELGSVSSGLHVMLSNAYAAAGRWEEAAKAR 450

Query: 645 KLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTK 704
           K+MRDRG+KKE G SW+E  N++H F   D +H ++  +Y  L++L  EM K GYV DT 
Sbjct: 451 KMMRDRGIKKETGLSWVEEGNRIHTFAAGDRSHAKSVEIYDKLDELGEEMDKAGYVADTS 510

Query: 705 FVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVV 764
           FVL +++ ++K  ++  HSE+LA+AFG +  P G  +RV+KNLR+CGDCH A KF+SK  
Sbjct: 511 FVLKEVDGEEKSRSIRYHSERLAIAFGFITFPHGQPIRVMKNLRVCGDCHTAIKFISKCT 570

Query: 765 GREIVVRDGKRFHHFRDGKCSCGDYW 790
           GR I+VRD  RFH F DGKC+CGDYW
Sbjct: 571 GRVIIVRDNNRFHRFEDGKCTCGDYW 596



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 189/409 (46%), Gaps = 52/409 (12%)

Query: 87  LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
           LI  YS +     + ++F+ +P K   T  ++++I++++ N     ++  FR M R  V 
Sbjct: 61  LINFYSKTHLPYSSLQIFHDSPHKSATT--WSSVISSFAQNDLPLLSLNYFRLMLRQGVP 118

Query: 147 PDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206
           PD+  F S   +  ++       M +HC  +K+   L   V +++I +Y KC    +   
Sbjct: 119 PDDHIFPSATKSCGILSSLPVAKM-LHCFALKTAYHLDIFVGSSVIDMYAKCGDICY--- 174

Query: 207 RSLMGAARRVFDEMPERDELSWTTMMTGYVK----NDYLDAAREFLDGMSENVGVAWNAL 262
                 A  VFDEMP R+ +SW+ ++ GYV+    ++ L   + FL    EN GV     
Sbjct: 175 ------AHNVFDEMPYRNVVSWSGLIYGYVQLGEDDESLRLFKRFLV-EEENEGV----- 222

Query: 263 ISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322
                             ++FT +SV+  C  S L ++G+ +H    +T    + + S  
Sbjct: 223 ------------------NDFTLSSVLRVCGGSTLLQMGRLIHGLSFKT----SFDSSCF 260

Query: 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR--- 379
           V ++L++LY KCG V EA D+F ++  R+L  WNA+L A       D+   LF+ M+   
Sbjct: 261 VASSLISLYSKCGVVEEAYDVFEEVTVRNLGMWNAMLIACAQHAHTDKTFELFDKMKSVG 320

Query: 380 --ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
             + N +++  ++   +  G  E+G   F  M+  G +P    ++  +      G L + 
Sbjct: 321 GMKANFITFLCVLYACSHAGLVEKGKYYFELMKDYGIEPGTQHYSTMVDLLGRAGKLNDA 380

Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS 486
            +L  ++     + + S   AL+T     G  + A+ V + +  + SVS
Sbjct: 381 VKLIEEM---PMEPTESVWGALLTGCRLHGNTKLASYVADRVSELGSVS 426



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 82/177 (46%), Gaps = 13/177 (7%)

Query: 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA 492
           +L  G QLHA ++  G  +     + LI  Y++  +  ++  +F+  P+  + +W+++I+
Sbjct: 35  SLPKGLQLHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSSLQIFHDSPHKSATTWSSVIS 94

Query: 493 ALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN-HAGLVKEGRRYFETMHGPYGI 551
           +  Q+     ++  +  ML++G+ PD   F +   +C   + L      +   +   Y +
Sbjct: 95  SFAQNDLPLLSLNYFRLMLRQGVPPDDHIFPSATKSCGILSSLPVAKMLHCFALKTAYHL 154

Query: 552 PPGEDHY--ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLG 606
               D +  +  ID+  + G    A +V D +P++ +   W  L     I+G + LG
Sbjct: 155 ----DIFVGSSVIDMYAKCGDICYAHNVFDEMPYR-NVVSWSGL-----IYGYVQLG 201


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 190/451 (42%), Positives = 292/451 (64%)

Query: 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399
           A+ +F ++  R+LV   A++S Y   G +++A+ +F+ M E++L+ W+ MISG A++   
Sbjct: 2   AQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKP 61

Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNAL 459
           +E L LFS+M++ G KP        I++CA LG L+  + +H  +  +G   +L   NAL
Sbjct: 62  QEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNAL 121

Query: 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519
           I MYA+CG + AA  VF  M + + +SW +MI A   HG+ + A++ + QM  E I P+ 
Sbjct: 122 IDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNG 181

Query: 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579
           +TF+ VL AC+HAGLV+EGRR F +M   + I P  +HY   +DL  RA    +A ++++
Sbjct: 182 VTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVE 241

Query: 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639
           ++P  P+  IW +L+A C+IHG  +LG  AA+Q+ +L P H G  V LSN+YA   RW D
Sbjct: 242 TMPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQD 301

Query: 640 AARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGY 699
              +R LM+ RG+ KE GCS IE++N+V+ F++ D  H +A  +Y+ L+++V E++ +GY
Sbjct: 302 VGELRNLMKQRGISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVGY 361

Query: 700 VPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKF 759
            P+T+ VL D+E + K+  +  HSEKLA+ +GLM    G+ +R++KNLR+C DCH   K 
Sbjct: 362 TPNTRSVLVDVEEEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFIKL 421

Query: 760 MSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           +SKV G EI+VRD  RFHH++ G CSC DYW
Sbjct: 422 VSKVYGMEIIVRDRTRFHHYKAGVCSCNDYW 452



 Score =  125 bits (315), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 151/326 (46%), Gaps = 48/326 (14%)

Query: 213 ARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL- 271
           A+++F ++  R+ +  T M++GY +   ++ AR   D M E   V W+A+ISGY   +  
Sbjct: 2   AQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKP 61

Query: 272 --------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
                   +M +  I+ D+ T  SVISACA  G+    K +H Y+     K     +LPV
Sbjct: 62  QEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYV----DKNGLGGALPV 117

Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
           NNAL+ +Y KCG +  AR +F +M  R+++SW ++++A+                     
Sbjct: 118 NNALIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFA-------------------- 157

Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
                 I G A N      LK F QM+ E  KP    F G + +C+  G +E GR+  A 
Sbjct: 158 ------IHGDASN-----ALKFFYQMKDENIKPNGVTFVGVLYACSHAGLVEEGRRTFAS 206

Query: 444 LVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV-DSVSWNAMIAALGQHGNGA 501
           + +             ++ ++ R  ++  A  +  TMP   + V W +++AA   HG   
Sbjct: 207 MTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVIWGSLMAACQIHGENE 266

Query: 502 RAIELYEQMLKEGILPDRITFLTVLS 527
                 +Q+L+  + PD    L  LS
Sbjct: 267 LGEFAAKQVLE--LEPDHDGALVQLS 290



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 149/296 (50%), Gaps = 42/296 (14%)

Query: 69  ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
           A+ LF +I   ++V  T +I+ YS    V+ AR +F++  ++ +D V ++AMI+ Y+ + 
Sbjct: 2   AQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQ--MEEKDLVCWSAMISGYAESD 59

Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALA-LIVEEEKQCMQMHCTVVKSGTGLFTSV 187
               A+ LF +M+   +KPD  T  SV+SA A L V +  + + M+  V K+G G    V
Sbjct: 60  KPQEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMY--VDKNGLGGALPV 117

Query: 188 LNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY-VKNDYLDAARE 246
            NALI +Y KC +         +GAAR VF++M  R+ +SWT+M+  + +  D  +A + 
Sbjct: 118 NNALIDMYAKCGN---------LGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKF 168

Query: 247 FLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306
           F     EN                       I+ +  T+  V+ AC+++GL   G++  A
Sbjct: 169 FYQMKDEN-----------------------IKPNGVTFVGVLYACSHAGLVEEGRRTFA 205

Query: 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP-ERDLVSWNAILSA 361
            +   E   TP+        +V L+ +   + +A ++   MP   ++V W ++++A
Sbjct: 206 SMT-NEHNITPKHEHY--GCMVDLFGRANLLRDALELVETMPLAPNVVIWGSLMAA 258


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 258/785 (32%), Positives = 383/785 (48%), Gaps = 96/785 (12%)

Query: 30   TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIA 89
            TS+    +HAH+  +G         +LI+ Y +      ++ +FD  P+PD      LI 
Sbjct: 360  TSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIK 419

Query: 90   AYS----ASDNVKLAREMFNKTPLKMRDTVFYNAM--------ITAYSHNSNGHAAIELF 137
             Y       + V L  EM  +   ++ + VF + +        ++    N      +++F
Sbjct: 420  CYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQASEGLDMF 479

Query: 138  RDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVK 197
              M  + V+PD+ T  SV  A +    E           VK G                 
Sbjct: 480  SQMISEAVEPDSVTMLSVTEACS----ELGSLRLGRLGRVKEG----------------- 518

Query: 198  CVSSPFVSSRSLMG-AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
                     RS+ G   RR  D  PE D L    +M  Y     L    +  + + E   
Sbjct: 519  ---------RSVHGFVIRRAMD--PELDFLG-PALMELYADTGNLRDCHKVFETIKEKTI 566

Query: 257  VAWNALISGYVH----RELKMLMLRIQL-----DEFTYTSVISACANSGLFRLGKQVHAY 307
            ++WN LIS +       E  +L +++Q      D ++  S +SAC      +LG Q+H Y
Sbjct: 567  LSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGY 626

Query: 308  LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367
            +++T       F+  V NAL+ +Y KC                               G 
Sbjct: 627  IIKT-----GNFNDFVQNALIDMYAKC-------------------------------GF 650

Query: 368  IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
            +  A  +FE ++E++L++W  MI G +QNGY  E + LF QM +   K     F   I +
Sbjct: 651  VHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQA 710

Query: 428  CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSW 487
            C+ LG LE G+ +H +L+  G         AL  MY++CG ++ A+ VF+ M     VSW
Sbjct: 711  CSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSW 770

Query: 488  NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547
            + MIA  G HG     I L+ QML  GI P+ ITF+ +LSAC+HAG V+EG+ YF +M  
Sbjct: 771  SVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSM-S 829

Query: 548  PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607
             +G+ P  DH+A  +DLL RAG  + A  +I SLPF  ++ IW ALL GCRIH  ID+  
Sbjct: 830  EFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIK 889

Query: 608  QAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKV 667
               + L  +     G Y LLSN+YA  G WD   +VR +M+ +G++K PG S IE+D K+
Sbjct: 890  SIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKI 949

Query: 668  HVFLVDDTAHPEAQAVYKYLEQL--VLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEK 725
            + F   DT+H + + +Y++LE    ++  +     PD   V        KE  + +HSEK
Sbjct: 950  YRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIV--GTSKFNKENNVVSHSEK 1007

Query: 726  LAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCS 785
            LA+AFG++    G T+R+ KNLR+C DCH+  K  SK+ GREI++RD  RFH FR+G CS
Sbjct: 1008 LAIAFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCS 1067

Query: 786  CGDYW 790
            C DYW
Sbjct: 1068 CNDYW 1072


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/515 (38%), Positives = 323/515 (62%), Gaps = 6/515 (1%)

Query: 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV 337
           ++ ++FT+  V+ ACA       GKQ+H ++++     + EF   V + LV +Y  CG +
Sbjct: 119 VEPNKFTFPCVLKACAKLARIEEGKQLHGFVVKL-GLVSDEF---VRSNLVRVYVMCGAM 174

Query: 338 NEARDIFNQMP-ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396
            +A  +F Q   E ++V WN ++  YV  G +  ++ LF++M  ++++SW VMISG AQN
Sbjct: 175 KDAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQN 234

Query: 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456
           G+ +E +++F  M+L    P        + + + LGA+E G+ +H     +  +     G
Sbjct: 235 GHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLG 294

Query: 457 NALITMYARCGVVEAANCVFNTMPNV-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGI 515
           +ALI MY++CG ++ A  VF  + N  + ++W+A+I  L  HG    A++ + +M + G+
Sbjct: 295 SALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGV 354

Query: 516 LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAK 575
            P  + ++ VLSAC+HAGLV+EGR  +  M    G+ P  +HY   +DLL RAG   EA+
Sbjct: 355 TPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAE 414

Query: 576 DVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLG 635
            +I ++P KP   I +ALL  C++HGNI++G + A+ L    PH +G+YV LSNM+A+ G
Sbjct: 415 QLILNMPVKPDDVILKALLGACKMHGNIEMGERIAKILMGWYPHDSGSYVALSNMFASEG 474

Query: 636 RWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMR 695
            W+   +VR  M++  ++K+PGCSWIE+D  +H FLV+D +HP A+ ++  LE++   +R
Sbjct: 475 NWEGVVKVRLKMKELDIRKDPGCSWIELDGVIHEFLVEDDSHPRAEGIHSMLEEMSDRLR 534

Query: 696 KLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHN 755
            +GY P+T  VL +M+  +K+ AL  HSEK+A+AFGL+       ++++KNLR+C DCH+
Sbjct: 535 SVGYRPNTTQVLLNMDEKEKQSALHYHSEKIAIAFGLISTRPQTPLQIVKNLRVCEDCHS 594

Query: 756 AFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
           + K +SK+  R+I+VRD KRFHHF +G CSC DYW
Sbjct: 595 SIKLVSKIYNRKIIVRDRKRFHHFENGSCSCMDYW 629



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 131/500 (26%), Positives = 211/500 (42%), Gaps = 93/500 (18%)

Query: 30  TSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLK--LVYARTLFDEIPQPDIVARTTL 87
           T+   + +HAH I +G          L+     S +  + YAR  F +I  P+  +  T+
Sbjct: 27  TTRHLKQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCFSWNTI 86

Query: 88  IAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD-VK 146
           I A + SD+  L                           + N   A+  F  M  D  V+
Sbjct: 87  IRALADSDDDDL--------------------------FHVNSLEALLYFSHMLTDGLVE 120

Query: 147 PDNFTFTSVLSALALI--VEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204
           P+ FTF  VL A A +  +EE KQ   +H  VVK G      V + L+ VYV C      
Sbjct: 121 PNKFTFPCVLKACAKLARIEEGKQ---LHGFVVKLGLVSDEFVRSNLVRVYVMC------ 171

Query: 205 SSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264
              ++  A    +    E + + W  M+ GYV+   L A+RE  D M     V+WN +IS
Sbjct: 172 --GAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMIS 229

Query: 265 GYVH----RELKMLMLRIQLDE-----FTYTSVISACANSGLFRLGKQVHAYLLRTEAKP 315
           G       +E   +   +QL +      T  SV+ A +  G   LGK VH +  + E   
Sbjct: 230 GCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEI-- 287

Query: 316 TPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375
             E    + +AL+ +Y KCG +++A  +                               F
Sbjct: 288 --EIDDVLGSALIDMYSKCGSIDKAVQV-------------------------------F 314

Query: 376 EAMR-ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434
           E +R ++N ++W+ +I GLA +G   + L  F +M+  G  P D  + G +++C+  G +
Sbjct: 315 EGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLV 374

Query: 435 ENGRQLHAQLVH-SGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIA 492
           E GR ++  +V+  G    +     ++ +  R G +E A  +   MP   D V   A++ 
Sbjct: 375 EEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLG 434

Query: 493 ALGQHGNGARAIELYEQMLK 512
           A   HGN    IE+ E++ K
Sbjct: 435 ACKMHGN----IEMGERIAK 450


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 259/787 (32%), Positives = 396/787 (50%), Gaps = 103/787 (13%)

Query: 64  LKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITA 123
           +K   ++T F  + +P+ +  T  +  +  S  +  A +MF K  +   DT  +N +I  
Sbjct: 41  IKRAQSKTSFKPLARPNDLNITRDLCGFVESGLMGNALDMFEK--MNHSDTFIWNVIIRG 98

Query: 124 YSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA----LALIVEEEKQCMQMHCTVVKS 179
           Y++N     AI+ +  M  + ++ DNFTF  V+ A    LAL+V +     ++H  ++K 
Sbjct: 99  YTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACGELLALMVGQ-----KVHGKLIKI 153

Query: 180 GTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKND 239
           G  L   V N LI +Y+K            +  A +VFDEMP RD +SW +M++GY    
Sbjct: 154 GFDLDVYVCNFLIDMYLKI---------GFIELAEKVFDEMPVRDLVSWNSMVSGYQ--- 201

Query: 240 YLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFR 299
                   +DG         + L S    +E  ML L  + D F   S + AC+     R
Sbjct: 202 --------IDG---------DGLSSLMCFKE--MLRLGNKADRFGMISALGACSIEHCLR 242

Query: 300 LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ------------- 346
            G ++H  ++R+E     E  + V  +L+ +Y KCGKV+ A  +FN+             
Sbjct: 243 SGMEIHCQVIRSEL----ELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMI 298

Query: 347 --MPERD----------------------------------------LVSWNAILSAYVS 364
             M E D                                        LV   A++  Y  
Sbjct: 299 GGMQEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGK 358

Query: 365 AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424
            G +  A+ +F  M E+N++SW  M++   QN   +E LK+F  +  E  KP     A  
Sbjct: 359 CGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASV 418

Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS 484
           + + A L +   G+Q+H+ ++  G  S+    NA++ MYA+CG ++ A   F+ M   D 
Sbjct: 419 LPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDV 478

Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544
           VSWN MI A   HG G  +I+ + +M  +G  P+  TF+++L+AC+ +GL+ EG  +F +
Sbjct: 479 VSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNS 538

Query: 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNID 604
           M   YGI PG +HY   +DLL R G   EAK  I+ +P  P+A IW +LLA  R H ++ 
Sbjct: 539 MKVEYGIDPGIEHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASRNHNDVV 598

Query: 605 LGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVD 664
           L   AA  +  L   + G YVLLSNMYA  GRW+D  R++ LM+++G+ K  GCS ++++
Sbjct: 599 LAELAARHILSLKHDNTGCYVLLSNMYAEAGRWEDVDRIKYLMKEQGLVKTVGCSMVDIN 658

Query: 665 NKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPD-TKFVLHDMESDQKEYALSTHS 723
            +   F+  D +H     +Y  L+ L+ ++ +  Y+   TKF   D+ + ++  +   HS
Sbjct: 659 GRSESFINQDRSHAHTNLIYDVLDILLKKIGEDIYLHSLTKFRPLDV-AKKRGNSPEYHS 717

Query: 724 EKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGK 783
            KLA+ FGL+    G  V V KN RIC DCH A K +S+V  REIVV D K FHHFRDG 
Sbjct: 718 VKLAICFGLISTAIGNPVIVRKNTRICDDCHRAAKKISQVTKREIVVGDAKVFHHFRDGC 777

Query: 784 CSCGDYW 790
           CSC DYW
Sbjct: 778 CSCRDYW 784



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 137/329 (41%), Gaps = 69/329 (20%)

Query: 34  ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
            +S+H   I   F P   +   L+D+Y K  +L  A  +F+++ + ++V+  T++AAY  
Sbjct: 330 GKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQ 389

Query: 94  SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
           ++  K                                  A+++F+ +  + +KPD  T  
Sbjct: 390 NEQYK---------------------------------EALKMFQHILNEPLKPDAITIA 416

Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
           SVL A+A +     +  Q+H  ++K G G  T + NA++ +Y KC           +  A
Sbjct: 417 SVLPAVAELASRS-EGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGD---------LQTA 466

Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
           R  FD M  +D +SW TM+  Y  + +   + +F    SE  G  +              
Sbjct: 467 REFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFF---SEMRGKGFKP------------ 511

Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
                  +  T+ S+++AC+ SGL   G       ++ E    P   +     ++ L  +
Sbjct: 512 -------NGSTFVSLLTACSISGLIDEGWGFFNS-MKVEYGIDP--GIEHYGCMLDLLGR 561

Query: 334 CGKVNEARDIFNQMPERDLVS-WNAILSA 361
            G ++EA+    +MP       W ++L+A
Sbjct: 562 NGNLDEAKCFIEEMPLVPTARIWGSLLAA 590


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.136    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,175,960,728
Number of Sequences: 23463169
Number of extensions: 503973344
Number of successful extensions: 1385262
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8576
Number of HSP's successfully gapped in prelim test: 3394
Number of HSP's that attempted gapping in prelim test: 1122939
Number of HSP's gapped (non-prelim): 88930
length of query: 790
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 639
effective length of database: 8,816,256,848
effective search space: 5633588125872
effective search space used: 5633588125872
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 81 (35.8 bits)