Query 003868
Match_columns 790
No_of_seqs 758 out of 4938
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 13:27:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003868.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003868hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 4E-132 8E-137 1167.9 80.6 753 10-788 48-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1E-119 2E-124 1037.3 69.7 611 112-790 85-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.9E-73 4.2E-78 670.5 60.6 556 11-616 150-720 (857)
4 PLN03218 maturation of RBCL 1; 100.0 7.9E-65 1.7E-69 583.8 58.9 506 79-657 368-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 3.7E-65 8.1E-70 586.6 54.9 525 10-588 367-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 2.1E-65 4.6E-70 588.0 50.4 465 14-553 88-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.6E-31 9.9E-36 318.4 63.3 596 25-648 273-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2E-30 4.2E-35 312.9 63.9 612 13-652 227-868 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 2.4E-31 5.2E-36 224.0 7.5 106 657-780 2-116 (116)
10 PRK11447 cellulose synthase su 99.9 2.8E-22 6.2E-27 242.3 62.5 407 208-653 283-744 (1157)
11 PRK11447 cellulose synthase su 99.9 1.2E-21 2.7E-26 236.8 60.2 588 12-651 27-701 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 5.1E-19 1.1E-23 204.1 60.9 589 24-652 55-742 (987)
13 PRK09782 bacteriophage N4 rece 99.9 9.5E-18 2.1E-22 193.6 56.5 533 62-649 56-705 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 7.5E-19 1.6E-23 179.1 34.4 385 226-647 117-516 (966)
15 KOG4626 O-linked N-acetylgluco 99.8 3.4E-18 7.3E-23 174.4 31.1 356 281-649 115-484 (966)
16 TIGR00990 3a0801s09 mitochondr 99.8 4.1E-17 8.9E-22 185.5 40.4 388 228-649 130-570 (615)
17 PRK11788 tetratricopeptide rep 99.8 4.6E-18 9.9E-23 183.5 30.6 294 330-657 44-354 (389)
18 PRK11788 tetratricopeptide rep 99.8 4.4E-17 9.5E-22 175.9 30.9 290 285-615 38-346 (389)
19 PRK15174 Vi polysaccharide exp 99.8 5.3E-16 1.1E-20 175.7 39.2 330 281-621 41-386 (656)
20 PRK10049 pgaA outer membrane p 99.8 3.4E-15 7.4E-20 172.9 42.0 389 227-649 17-455 (765)
21 PRK15174 Vi polysaccharide exp 99.8 7.4E-15 1.6E-19 166.4 40.7 343 208-586 19-384 (656)
22 PRK10049 pgaA outer membrane p 99.8 1.6E-14 3.4E-19 167.4 42.9 383 208-623 29-463 (765)
23 KOG2002 TPR-containing nuclear 99.7 3.8E-14 8.3E-19 153.1 41.4 534 66-649 146-744 (1018)
24 TIGR00990 3a0801s09 mitochondr 99.7 2.8E-14 6E-19 162.4 39.8 418 53-547 130-570 (615)
25 PRK14574 hmsH outer membrane p 99.7 6.9E-13 1.5E-17 150.6 45.8 410 208-649 48-512 (822)
26 KOG2002 TPR-containing nuclear 99.7 5.7E-13 1.2E-17 144.2 41.6 150 500-653 628-801 (1018)
27 KOG4422 Uncharacterized conser 99.7 1.4E-12 3E-17 128.4 38.2 441 31-581 131-587 (625)
28 PRK14574 hmsH outer membrane p 99.7 1.6E-12 3.5E-17 147.6 43.8 222 399-622 267-519 (822)
29 KOG2003 TPR repeat-containing 99.6 3.7E-13 7.9E-18 132.9 25.3 202 430-636 502-709 (840)
30 KOG4422 Uncharacterized conser 99.6 1.8E-11 3.8E-16 120.7 36.0 320 114-516 116-465 (625)
31 KOG0495 HAT repeat protein [RN 99.6 9.5E-10 2.1E-14 114.3 49.5 605 8-666 241-894 (913)
32 KOG2076 RNA polymerase III tra 99.6 8.8E-11 1.9E-15 126.8 42.6 565 31-649 155-848 (895)
33 KOG0495 HAT repeat protein [RN 99.5 2.8E-09 6E-14 110.9 48.1 533 64-650 265-846 (913)
34 KOG4318 Bicoid mRNA stability 99.5 7.1E-11 1.5E-15 126.6 37.5 594 8-654 20-812 (1088)
35 KOG2076 RNA polymerase III tra 99.5 4.2E-11 9.2E-16 129.2 32.5 342 293-649 150-511 (895)
36 PF13429 TPR_15: Tetratricopep 99.5 4E-14 8.6E-19 144.6 9.2 256 390-649 15-276 (280)
37 KOG4318 Bicoid mRNA stability 99.5 2.1E-10 4.5E-15 123.2 35.7 532 35-654 10-598 (1088)
38 KOG1915 Cell cycle control pro 99.5 1.5E-09 3.3E-14 108.7 39.2 493 80-648 72-623 (677)
39 KOG1126 DNA-binding cell divis 99.5 9.8E-12 2.1E-16 130.1 23.8 242 399-649 335-585 (638)
40 KOG0547 Translocase of outer m 99.4 6.7E-11 1.5E-15 118.8 26.4 376 229-648 119-564 (606)
41 PRK10747 putative protoheme IX 99.4 3.3E-10 7E-15 121.2 32.3 217 392-615 162-389 (398)
42 PRK10747 putative protoheme IX 99.4 1.2E-10 2.7E-15 124.4 28.9 275 365-649 97-389 (398)
43 KOG2003 TPR repeat-containing 99.4 4.5E-11 9.8E-16 118.4 22.9 255 392-650 428-689 (840)
44 TIGR00540 hemY_coli hemY prote 99.4 6.9E-10 1.5E-14 119.4 33.1 280 333-615 96-398 (409)
45 KOG1155 Anaphase-promoting com 99.4 6.8E-10 1.5E-14 111.1 29.7 327 318-649 161-494 (559)
46 KOG1915 Cell cycle control pro 99.4 4.1E-09 8.8E-14 105.7 34.4 400 224-657 72-507 (677)
47 KOG1126 DNA-binding cell divis 99.4 6.7E-11 1.5E-15 123.9 22.9 274 367-649 334-619 (638)
48 KOG1155 Anaphase-promoting com 99.3 7.5E-09 1.6E-13 103.8 32.3 247 290-545 235-492 (559)
49 TIGR00540 hemY_coli hemY prote 99.3 1.5E-09 3.3E-14 116.7 29.9 279 363-648 95-397 (409)
50 PF13429 TPR_15: Tetratricopep 99.3 7.9E-12 1.7E-16 127.6 10.2 216 392-615 53-276 (280)
51 KOG2047 mRNA splicing factor [ 99.3 3.3E-07 7.2E-12 95.8 43.0 558 45-636 76-709 (835)
52 KOG2047 mRNA splicing factor [ 99.3 9.4E-07 2E-11 92.5 45.2 466 49-604 168-711 (835)
53 TIGR02521 type_IV_pilW type IV 99.3 9.3E-10 2E-14 109.2 22.3 198 451-649 29-231 (234)
54 PF13041 PPR_2: PPR repeat fam 99.2 1.4E-11 2.9E-16 87.9 5.8 50 112-161 1-50 (50)
55 KOG1173 Anaphase-promoting com 99.2 3.1E-08 6.8E-13 102.1 31.5 196 450-649 309-517 (611)
56 PF13041 PPR_2: PPR repeat fam 99.2 5.5E-11 1.2E-15 84.8 6.6 50 482-531 1-50 (50)
57 COG3071 HemY Uncharacterized e 99.2 8.4E-08 1.8E-12 95.1 30.7 274 335-615 98-389 (400)
58 KOG1174 Anaphase-promoting com 99.2 2.6E-07 5.6E-12 91.5 32.8 390 184-622 96-506 (564)
59 COG2956 Predicted N-acetylgluc 99.2 1.9E-08 4.1E-13 96.5 24.0 290 334-659 48-356 (389)
60 COG2956 Predicted N-acetylgluc 99.1 5.9E-08 1.3E-12 93.2 26.8 278 295-614 48-345 (389)
61 COG3071 HemY Uncharacterized e 99.1 2.9E-08 6.3E-13 98.3 25.6 248 397-649 98-356 (400)
62 PRK12370 invasion protein regu 99.1 1E-08 2.2E-13 114.8 25.1 243 399-651 277-536 (553)
63 KOG1840 Kinesin light chain [C 99.1 8.5E-09 1.8E-13 109.7 22.8 229 420-648 201-477 (508)
64 KOG0547 Translocase of outer m 99.1 9.5E-07 2.1E-11 89.6 34.2 218 392-617 335-567 (606)
65 KOG3616 Selective LIM binding 99.1 2.4E-06 5.2E-11 90.4 38.1 378 189-649 619-1023(1636)
66 KOG1173 Anaphase-promoting com 99.1 4.2E-07 9.2E-12 93.9 31.9 286 279-598 241-533 (611)
67 KOG3616 Selective LIM binding 99.1 1.3E-06 2.8E-11 92.4 34.5 441 92-646 455-933 (1636)
68 KOG4162 Predicted calmodulin-b 99.0 1.1E-06 2.3E-11 94.3 33.9 475 124-649 237-782 (799)
69 KOG2376 Signal recognition par 99.0 4.6E-06 1E-10 86.9 36.9 277 360-646 183-516 (652)
70 TIGR02521 type_IV_pilW type IV 99.0 6.8E-08 1.5E-12 95.7 23.7 199 384-617 32-233 (234)
71 KOG1129 TPR repeat-containing 99.0 6.9E-09 1.5E-13 99.2 15.2 225 388-650 228-458 (478)
72 KOG0985 Vesicle coat protein c 99.0 9.8E-05 2.1E-09 81.5 47.5 143 483-646 1103-1245(1666)
73 PRK11189 lipoprotein NlpI; Pro 99.0 3E-08 6.5E-13 101.4 20.3 211 432-651 40-266 (296)
74 PRK12370 invasion protein regu 99.0 3.9E-08 8.4E-13 110.1 21.8 210 432-649 275-501 (553)
75 KOG2376 Signal recognition par 99.0 1.2E-05 2.5E-10 84.0 37.1 125 14-145 13-141 (652)
76 KOG1840 Kinesin light chain [C 98.9 7.7E-08 1.7E-12 102.5 19.6 202 282-509 199-434 (508)
77 COG3063 PilF Tfp pilus assembl 98.9 7.8E-08 1.7E-12 88.3 16.5 163 486-652 37-204 (250)
78 PRK11189 lipoprotein NlpI; Pro 98.9 3.7E-07 8.1E-12 93.4 23.6 215 399-621 42-270 (296)
79 KOG0985 Vesicle coat protein c 98.9 0.0001 2.2E-09 81.4 41.8 451 31-508 659-1218(1666)
80 PF12569 NARP1: NMDA receptor- 98.8 6.6E-05 1.4E-09 81.5 36.9 249 58-350 12-291 (517)
81 KOG3785 Uncharacterized conser 98.8 3E-05 6.4E-10 75.7 30.0 129 488-619 363-493 (557)
82 KOG1129 TPR repeat-containing 98.8 2.9E-07 6.2E-12 88.4 16.0 229 356-620 227-462 (478)
83 PF12569 NARP1: NMDA receptor- 98.8 7.2E-06 1.6E-10 88.8 28.9 278 330-616 13-334 (517)
84 KOG3617 WD40 and TPR repeat-co 98.8 0.00013 2.8E-09 78.9 37.0 379 49-509 725-1170(1416)
85 KOG1125 TPR repeat-containing 98.8 2.1E-07 4.6E-12 96.6 15.6 215 429-649 296-526 (579)
86 COG3063 PilF Tfp pilus assembl 98.7 2.8E-06 6.1E-11 78.3 20.8 193 425-620 42-240 (250)
87 KOG3617 WD40 and TPR repeat-co 98.7 4.9E-05 1.1E-09 82.0 32.5 245 182-479 723-993 (1416)
88 KOG1174 Anaphase-promoting com 98.7 0.00023 5E-09 71.2 34.7 260 278-546 228-498 (564)
89 KOG3785 Uncharacterized conser 98.7 0.00013 2.8E-09 71.4 31.9 393 208-650 71-490 (557)
90 KOG0624 dsRNA-activated protei 98.7 1.4E-05 3E-10 77.6 25.1 289 327-621 44-375 (504)
91 KOG1156 N-terminal acetyltrans 98.7 0.00012 2.5E-09 77.6 33.3 353 291-652 50-470 (700)
92 PF04733 Coatomer_E: Coatomer 98.6 1.6E-06 3.4E-11 87.5 18.0 159 455-620 104-269 (290)
93 KOG4162 Predicted calmodulin-b 98.6 0.00021 4.5E-09 77.4 34.4 132 486-622 652-789 (799)
94 KOG1914 mRNA cleavage and poly 98.6 0.00031 6.8E-09 72.8 33.9 172 399-571 347-526 (656)
95 PF04733 Coatomer_E: Coatomer 98.6 5.7E-07 1.2E-11 90.6 14.3 217 420-649 37-264 (290)
96 KOG1127 TPR repeat-containing 98.6 0.0002 4.3E-09 79.4 34.2 559 66-649 474-1103(1238)
97 KOG4340 Uncharacterized conser 98.6 8.5E-05 1.9E-09 70.9 27.2 383 228-649 13-442 (459)
98 cd05804 StaR_like StaR_like; a 98.6 6.8E-05 1.5E-09 79.7 30.7 195 457-651 118-337 (355)
99 KOG0548 Molecular co-chaperone 98.6 3.1E-05 6.7E-10 80.2 24.4 389 208-649 16-454 (539)
100 PRK04841 transcriptional regul 98.5 0.0021 4.6E-08 77.8 43.8 234 386-620 494-764 (903)
101 KOG4340 Uncharacterized conser 98.5 9.8E-05 2.1E-09 70.5 24.6 321 45-443 5-335 (459)
102 PRK04841 transcriptional regul 98.5 0.00017 3.7E-09 87.1 33.5 384 257-651 318-761 (903)
103 KOG1156 N-terminal acetyltrans 98.5 0.00057 1.2E-08 72.6 32.1 355 285-652 11-436 (700)
104 cd05804 StaR_like StaR_like; a 98.5 0.00019 4E-09 76.4 29.8 251 361-616 52-336 (355)
105 TIGR03302 OM_YfiO outer membra 98.5 9.9E-06 2.1E-10 80.4 18.5 179 452-650 32-232 (235)
106 KOG1070 rRNA processing protei 98.5 8.2E-06 1.8E-10 92.8 19.3 201 450-654 1455-1667(1710)
107 PRK15359 type III secretion sy 98.4 3.9E-06 8.5E-11 75.4 13.1 122 505-632 14-137 (144)
108 PRK10370 formate-dependent nit 98.4 1.5E-05 3.2E-10 75.9 17.1 146 491-650 23-173 (198)
109 KOG1127 TPR repeat-containing 98.4 0.00064 1.4E-08 75.6 30.3 174 97-310 474-658 (1238)
110 PF12854 PPR_1: PPR repeat 98.4 4.3E-07 9.4E-12 57.9 3.8 33 45-77 2-34 (34)
111 PF12854 PPR_1: PPR repeat 98.4 5.8E-07 1.2E-11 57.3 4.4 32 550-581 2-33 (34)
112 KOG0548 Molecular co-chaperone 98.3 0.0004 8.6E-09 72.3 26.1 165 459-634 304-473 (539)
113 PRK15359 type III secretion sy 98.3 2.4E-05 5.3E-10 70.3 15.2 106 540-650 14-121 (144)
114 KOG1125 TPR repeat-containing 98.3 2.3E-05 4.9E-10 81.9 16.6 214 329-546 293-525 (579)
115 PLN02789 farnesyltranstransfer 98.3 0.00012 2.6E-09 74.9 21.0 162 469-634 88-268 (320)
116 PRK15363 pathogenicity island 98.3 1.7E-05 3.6E-10 70.0 12.5 118 555-695 35-154 (157)
117 KOG0624 dsRNA-activated protei 98.3 0.0013 2.9E-08 64.3 26.1 283 287-581 43-367 (504)
118 COG5010 TadD Flp pilus assembl 98.3 3E-05 6.4E-10 73.4 14.6 136 515-652 62-199 (257)
119 KOG1070 rRNA processing protei 98.3 0.00016 3.4E-09 82.9 22.6 214 320-534 1457-1686(1710)
120 TIGR03302 OM_YfiO outer membra 98.2 8.1E-05 1.8E-09 73.8 17.3 183 416-618 31-234 (235)
121 PRK15179 Vi polysaccharide bio 98.2 0.0001 2.2E-09 83.2 19.5 190 421-627 31-228 (694)
122 COG4783 Putative Zn-dependent 98.2 0.00045 9.8E-09 71.2 22.1 119 528-648 315-435 (484)
123 PRK14720 transcript cleavage f 98.2 0.00039 8.4E-09 79.3 23.4 148 455-632 118-268 (906)
124 KOG1128 Uncharacterized conser 98.1 8.4E-05 1.8E-09 79.8 16.9 189 448-651 393-583 (777)
125 PRK15179 Vi polysaccharide bio 98.1 0.00028 6E-09 79.7 22.1 143 448-594 81-229 (694)
126 PRK10370 formate-dependent nit 98.1 0.00018 3.9E-09 68.5 17.6 154 460-625 23-182 (198)
127 TIGR00756 PPR pentatricopeptid 98.1 4.2E-06 9.1E-11 54.3 4.2 35 115-149 1-35 (35)
128 KOG1128 Uncharacterized conser 98.1 0.00011 2.3E-09 79.1 16.1 211 388-616 403-616 (777)
129 COG5010 TadD Flp pilus assembl 98.1 0.00034 7.4E-09 66.4 17.2 153 489-645 71-226 (257)
130 TIGR02552 LcrH_SycD type III s 98.0 5.5E-05 1.2E-09 67.5 11.5 97 554-650 16-114 (135)
131 TIGR00756 PPR pentatricopeptid 98.0 8.1E-06 1.8E-10 52.9 4.4 35 485-519 1-35 (35)
132 COG4783 Putative Zn-dependent 98.0 0.00098 2.1E-08 68.8 21.1 140 490-651 312-455 (484)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00014 3.1E-09 75.8 14.6 122 522-648 172-295 (395)
134 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.4E-10 51.9 4.1 34 114-147 1-34 (34)
135 PLN02789 farnesyltranstransfer 97.9 0.0008 1.7E-08 68.9 18.9 185 461-649 45-249 (320)
136 PF13812 PPR_3: Pentatricopept 97.9 2.3E-05 5E-10 50.4 4.3 33 485-517 2-34 (34)
137 KOG3081 Vesicle coat complex C 97.9 0.004 8.7E-08 59.2 20.5 154 460-620 115-275 (299)
138 TIGR02552 LcrH_SycD type III s 97.8 0.00035 7.6E-09 62.3 12.9 113 506-622 5-120 (135)
139 KOG3081 Vesicle coat complex C 97.8 0.0031 6.8E-08 59.9 18.8 148 491-648 115-269 (299)
140 KOG2053 Mitochondrial inherita 97.8 0.1 2.2E-06 58.3 34.6 159 422-585 440-609 (932)
141 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00064 1.4E-08 71.0 15.0 127 454-585 170-298 (395)
142 PRK14720 transcript cleavage f 97.8 0.0057 1.2E-07 70.1 23.5 113 420-547 118-251 (906)
143 PF04840 Vps16_C: Vps16, C-ter 97.8 0.068 1.5E-06 54.7 29.7 122 456-597 180-301 (319)
144 KOG3060 Uncharacterized conser 97.7 0.0015 3.3E-08 61.5 15.3 180 466-649 25-219 (289)
145 PF01535 PPR: PPR repeat; Int 97.7 4.4E-05 9.5E-10 47.8 3.4 31 115-145 1-31 (31)
146 cd00189 TPR Tetratricopeptide 97.7 0.00044 9.5E-09 56.7 10.2 92 558-649 3-96 (100)
147 PF13414 TPR_11: TPR repeat; P 97.6 0.00013 2.9E-09 56.0 6.0 64 586-649 2-66 (69)
148 KOG3060 Uncharacterized conser 97.6 0.0059 1.3E-07 57.7 17.2 174 449-627 47-231 (289)
149 PF09976 TPR_21: Tetratricopep 97.6 0.0027 5.9E-08 57.2 15.1 122 487-612 15-143 (145)
150 PF09976 TPR_21: Tetratricopep 97.6 0.0012 2.5E-08 59.7 12.3 124 522-647 15-144 (145)
151 PF01535 PPR: PPR repeat; Int 97.6 8.2E-05 1.8E-09 46.5 3.4 31 485-515 1-31 (31)
152 PF12895 Apc3: Anaphase-promot 97.6 7.6E-05 1.6E-09 60.0 3.7 78 568-646 2-83 (84)
153 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.00099 2.1E-08 57.7 11.1 93 558-650 5-105 (119)
154 PLN03088 SGT1, suppressor of 97.5 0.0013 2.9E-08 69.0 13.0 84 565-648 12-97 (356)
155 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0015 3.3E-08 56.5 11.3 103 522-624 5-113 (119)
156 PF13432 TPR_16: Tetratricopep 97.4 0.00028 6.1E-09 53.4 5.3 57 593-649 3-59 (65)
157 KOG1130 Predicted G-alpha GTPa 97.4 0.00076 1.7E-08 67.5 9.1 129 521-649 197-343 (639)
158 KOG1914 mRNA cleavage and poly 97.4 0.25 5.5E-06 52.1 34.8 424 182-645 17-534 (656)
159 PRK10153 DNA-binding transcrip 97.4 0.0067 1.4E-07 66.6 17.0 63 586-649 419-481 (517)
160 PRK02603 photosystem I assembl 97.3 0.0021 4.6E-08 59.9 11.2 82 555-636 35-121 (172)
161 CHL00033 ycf3 photosystem I as 97.3 0.0019 4.2E-08 59.9 10.9 94 554-647 34-139 (168)
162 KOG0553 TPR repeat-containing 97.3 0.0017 3.7E-08 63.0 9.8 99 529-629 91-191 (304)
163 PF05843 Suf: Suppressor of fo 97.3 0.0053 1.1E-07 62.1 14.0 133 485-620 2-140 (280)
164 PRK15331 chaperone protein Sic 97.3 0.0058 1.3E-07 54.4 12.2 88 562-649 44-133 (165)
165 KOG0550 Molecular chaperone (D 97.3 0.0057 1.2E-07 61.8 13.5 264 359-650 56-350 (486)
166 cd00189 TPR Tetratricopeptide 97.3 0.0031 6.6E-08 51.5 10.4 62 557-618 36-99 (100)
167 KOG2053 Mitochondrial inherita 97.2 0.54 1.2E-05 52.9 38.2 508 63-648 22-606 (932)
168 PF04840 Vps16_C: Vps16, C-ter 97.2 0.31 6.6E-06 50.0 28.8 107 355-477 180-286 (319)
169 PLN03088 SGT1, suppressor of 97.2 0.0038 8.2E-08 65.6 12.8 102 529-632 12-115 (356)
170 COG3898 Uncharacterized membra 97.2 0.3 6.4E-06 49.5 27.3 271 365-649 97-391 (531)
171 KOG0553 TPR repeat-containing 97.2 0.00086 1.9E-08 65.0 7.0 88 562-649 88-177 (304)
172 PRK02603 photosystem I assembl 97.2 0.0068 1.5E-07 56.5 13.0 131 483-636 34-166 (172)
173 CHL00033 ycf3 photosystem I as 97.1 0.018 3.9E-07 53.4 15.2 81 484-566 35-117 (168)
174 PF14559 TPR_19: Tetratricopep 97.1 0.00051 1.1E-08 52.5 3.9 52 598-649 2-53 (68)
175 PF13432 TPR_16: Tetratricopep 97.1 0.0014 3E-08 49.5 6.3 61 561-621 3-65 (65)
176 PF14938 SNAP: Soluble NSF att 97.1 0.045 9.8E-07 55.6 18.7 97 486-582 157-264 (282)
177 PF10037 MRP-S27: Mitochondria 97.1 0.0094 2E-07 62.7 13.7 120 413-532 61-186 (429)
178 COG4235 Cytochrome c biogenesi 97.1 0.0048 1E-07 60.4 10.7 107 551-657 152-263 (287)
179 PF13371 TPR_9: Tetratricopept 97.1 0.0016 3.6E-08 50.5 6.3 57 594-650 2-58 (73)
180 PF14938 SNAP: Soluble NSF att 97.1 0.065 1.4E-06 54.5 19.5 151 325-486 98-270 (282)
181 PF13431 TPR_17: Tetratricopep 97.0 0.00038 8.2E-09 44.3 1.6 33 610-642 2-34 (34)
182 KOG1538 Uncharacterized conser 97.0 0.11 2.3E-06 55.7 20.1 232 279-582 553-800 (1081)
183 PF05843 Suf: Suppressor of fo 97.0 0.021 4.6E-07 57.8 14.8 138 385-526 3-147 (280)
184 PF12895 Apc3: Anaphase-promot 96.9 0.0017 3.7E-08 52.1 5.1 80 497-580 2-83 (84)
185 COG4700 Uncharacterized protei 96.9 0.11 2.3E-06 46.9 16.2 133 515-649 85-221 (251)
186 PRK10153 DNA-binding transcrip 96.8 0.028 6E-07 61.8 15.3 142 479-622 332-488 (517)
187 KOG2796 Uncharacterized conser 96.7 0.14 3E-06 48.9 16.8 138 386-525 180-325 (366)
188 KOG1538 Uncharacterized conser 96.7 0.19 4E-06 54.0 19.5 26 208-251 646-671 (1081)
189 PF08579 RPM2: Mitochondrial r 96.7 0.021 4.5E-07 47.0 9.7 79 387-465 29-116 (120)
190 COG4700 Uncharacterized protei 96.7 0.032 6.9E-07 50.2 11.5 102 549-650 83-189 (251)
191 PF13281 DUF4071: Domain of un 96.7 0.18 3.8E-06 52.2 18.5 160 459-621 147-339 (374)
192 PRK10866 outer membrane biogen 96.7 0.1 2.3E-06 51.4 16.6 171 459-648 38-239 (243)
193 PF14559 TPR_19: Tetratricopep 96.6 0.0021 4.5E-08 49.1 3.7 49 531-581 3-51 (68)
194 PF13414 TPR_11: TPR repeat; P 96.6 0.0058 1.3E-07 46.8 6.0 65 554-618 2-69 (69)
195 KOG2041 WD40 repeat protein [G 96.6 1.5 3.2E-05 47.9 27.4 119 280-408 690-821 (1189)
196 PF06239 ECSIT: Evolutionarily 96.6 0.015 3.3E-07 54.1 9.4 97 473-570 34-153 (228)
197 PRK10803 tol-pal system protei 96.6 0.016 3.5E-07 57.5 10.5 94 556-649 144-245 (263)
198 PF12688 TPR_5: Tetratrico pep 96.6 0.024 5.2E-07 48.5 9.8 86 562-647 8-101 (120)
199 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.0098 2.1E-07 61.9 8.5 63 587-649 75-140 (453)
200 KOG2041 WD40 repeat protein [G 96.5 1.7 3.8E-05 47.4 24.9 154 208-384 748-910 (1189)
201 PRK15363 pathogenicity island 96.5 0.047 1E-06 48.5 11.5 88 489-580 40-128 (157)
202 PF08579 RPM2: Mitochondrial r 96.4 0.041 8.9E-07 45.3 9.8 79 488-567 29-116 (120)
203 PF10037 MRP-S27: Mitochondria 96.4 0.026 5.6E-07 59.5 11.0 120 448-568 61-186 (429)
204 PF13428 TPR_14: Tetratricopep 96.4 0.0052 1.1E-07 42.0 3.8 42 588-629 2-43 (44)
205 KOG2280 Vacuolar assembly/sort 96.4 2.3 4.9E-05 47.2 30.5 338 274-647 424-796 (829)
206 PF12688 TPR_5: Tetratrico pep 96.3 0.099 2.2E-06 44.7 12.3 90 389-478 7-100 (120)
207 PF07079 DUF1347: Protein of u 96.3 1.8 3.9E-05 45.1 33.6 123 465-592 391-530 (549)
208 PRK10866 outer membrane biogen 96.2 0.52 1.1E-05 46.4 18.6 191 225-443 32-237 (243)
209 PF03704 BTAD: Bacterial trans 96.1 0.07 1.5E-06 48.1 11.3 67 589-655 64-135 (146)
210 PF07079 DUF1347: Protein of u 96.1 2.1 4.6E-05 44.6 33.8 72 575-647 444-521 (549)
211 KOG1130 Predicted G-alpha GTPa 96.1 0.059 1.3E-06 54.5 11.1 242 284-544 17-300 (639)
212 KOG2280 Vacuolar assembly/sort 96.0 3.3 7.1E-05 46.0 32.8 110 455-580 686-795 (829)
213 PF13424 TPR_12: Tetratricopep 96.0 0.011 2.3E-07 46.6 4.4 61 588-648 6-73 (78)
214 PF06239 ECSIT: Evolutionarily 95.9 0.083 1.8E-06 49.3 10.3 73 396-468 65-153 (228)
215 PRK10803 tol-pal system protei 95.8 0.11 2.4E-06 51.6 11.9 63 559-621 184-251 (263)
216 KOG0543 FKBP-type peptidyl-pro 95.8 0.069 1.5E-06 54.5 10.2 62 588-649 258-319 (397)
217 PF13371 TPR_9: Tetratricopept 95.8 0.03 6.6E-07 43.3 6.2 62 563-624 3-66 (73)
218 KOG4555 TPR repeat-containing 95.7 0.083 1.8E-06 44.5 8.6 91 563-653 51-147 (175)
219 KOG0550 Molecular chaperone (D 95.6 0.53 1.2E-05 48.1 15.3 270 327-619 55-353 (486)
220 KOG2796 Uncharacterized conser 95.6 0.45 9.7E-06 45.6 13.9 134 489-650 182-315 (366)
221 PF13424 TPR_12: Tetratricopep 95.6 0.023 5E-07 44.6 4.9 61 556-616 6-75 (78)
222 KOG1258 mRNA processing protei 95.4 5.1 0.00011 43.5 27.9 182 452-636 296-490 (577)
223 PF13525 YfiO: Outer membrane 95.4 0.72 1.6E-05 44.2 15.4 54 359-412 12-71 (203)
224 COG0457 NrfG FOG: TPR repeat [ 95.4 2.9 6.2E-05 40.4 26.5 195 453-649 59-264 (291)
225 COG3898 Uncharacterized membra 95.2 4.4 9.4E-05 41.5 29.3 115 460-581 270-389 (531)
226 PF12921 ATP13: Mitochondrial 95.1 0.2 4.3E-06 43.3 9.3 49 550-598 47-99 (126)
227 PF09205 DUF1955: Domain of un 95.0 1.5 3.3E-05 37.4 13.8 140 495-653 13-152 (161)
228 COG4105 ComL DNA uptake lipopr 94.8 4.3 9.4E-05 39.3 18.9 57 593-649 173-232 (254)
229 PF13525 YfiO: Outer membrane 94.7 0.96 2.1E-05 43.3 14.2 59 232-310 12-70 (203)
230 PF12921 ATP13: Mitochondrial 94.7 0.51 1.1E-05 40.8 10.9 79 485-563 3-96 (126)
231 COG3118 Thioredoxin domain-con 94.6 3.4 7.4E-05 40.8 17.3 154 491-647 141-299 (304)
232 PLN03098 LPA1 LOW PSII ACCUMUL 94.6 0.2 4.3E-06 52.6 9.5 97 553-652 73-176 (453)
233 COG5107 RNA14 Pre-mRNA 3'-end 94.6 6.9 0.00015 40.8 31.4 133 484-620 397-535 (660)
234 KOG1585 Protein required for f 94.5 3.3 7.2E-05 39.5 16.2 200 421-645 34-251 (308)
235 PF13281 DUF4071: Domain of un 94.5 3.8 8.2E-05 42.7 18.3 68 361-428 150-227 (374)
236 PF13512 TPR_18: Tetratricopep 94.5 0.81 1.7E-05 40.1 11.5 86 564-649 19-127 (142)
237 COG4235 Cytochrome c biogenesi 94.4 0.41 8.8E-06 47.2 10.7 30 483-512 155-184 (287)
238 smart00299 CLH Clathrin heavy 94.3 2.4 5.3E-05 37.6 15.0 125 422-598 11-136 (140)
239 COG0457 NrfG FOG: TPR repeat [ 94.2 5.5 0.00012 38.3 25.7 198 418-619 59-268 (291)
240 KOG0543 FKBP-type peptidyl-pro 94.2 1 2.3E-05 46.2 13.4 94 556-649 258-354 (397)
241 KOG3941 Intermediate in Toll s 94.2 0.32 7E-06 46.9 9.1 101 471-572 52-175 (406)
242 PF00515 TPR_1: Tetratricopept 94.0 0.12 2.7E-06 32.6 4.3 33 588-620 2-34 (34)
243 COG1729 Uncharacterized protei 93.9 0.35 7.6E-06 47.1 8.9 90 557-649 144-243 (262)
244 PF07719 TPR_2: Tetratricopept 93.8 0.2 4.2E-06 31.6 5.0 33 588-620 2-34 (34)
245 PRK11906 transcriptional regul 93.7 1.9 4.1E-05 45.6 14.5 144 500-646 274-432 (458)
246 PRK11906 transcriptional regul 93.7 0.83 1.8E-05 48.2 11.8 116 534-649 273-400 (458)
247 PF04184 ST7: ST7 protein; In 93.6 0.85 1.8E-05 48.1 11.7 149 496-656 180-330 (539)
248 smart00299 CLH Clathrin heavy 93.6 3.2 6.9E-05 36.8 14.4 50 382-432 6-55 (140)
249 PF04053 Coatomer_WDAD: Coatom 93.3 1.1 2.3E-05 48.4 12.3 130 495-651 272-403 (443)
250 KOG2610 Uncharacterized conser 93.1 2.3 5E-05 42.4 13.0 113 466-581 116-235 (491)
251 PF03704 BTAD: Bacterial trans 93.0 0.58 1.3E-05 42.0 8.7 55 489-545 67-122 (146)
252 COG3118 Thioredoxin domain-con 92.9 2.1 4.6E-05 42.2 12.5 120 528-650 143-265 (304)
253 KOG1941 Acetylcholine receptor 92.7 0.9 2E-05 45.6 9.8 224 393-616 16-275 (518)
254 PF10300 DUF3808: Protein of u 92.7 3.5 7.6E-05 45.1 15.6 161 486-649 190-375 (468)
255 KOG2610 Uncharacterized conser 92.6 0.68 1.5E-05 46.0 8.7 159 496-657 115-283 (491)
256 PF04184 ST7: ST7 protein; In 92.6 5.1 0.00011 42.6 15.5 99 523-621 263-380 (539)
257 KOG1920 IkappaB kinase complex 92.6 25 0.00054 41.7 22.0 118 457-585 912-1029(1265)
258 PF04053 Coatomer_WDAD: Coatom 92.3 3.8 8.3E-05 44.2 14.9 105 460-582 325-429 (443)
259 COG4785 NlpI Lipoprotein NlpI, 92.2 4.5 9.7E-05 37.9 12.8 161 484-651 99-267 (297)
260 PF13512 TPR_18: Tetratricopep 92.0 4 8.6E-05 35.9 11.8 112 492-621 18-133 (142)
261 PF10300 DUF3808: Protein of u 91.9 7.5 0.00016 42.6 16.9 111 433-545 248-373 (468)
262 COG1729 Uncharacterized protei 91.8 1.4 3E-05 43.1 9.8 93 486-581 144-241 (262)
263 KOG1941 Acetylcholine receptor 91.7 5.3 0.00011 40.4 13.6 219 362-580 16-271 (518)
264 KOG2066 Vacuolar assembly/sort 91.5 29 0.00062 39.3 27.7 95 501-607 611-710 (846)
265 PRK15331 chaperone protein Sic 91.2 3 6.5E-05 37.6 10.5 82 465-547 49-133 (165)
266 PF09205 DUF1955: Domain of un 91.2 8.9 0.00019 32.9 12.6 61 388-449 91-151 (161)
267 KOG1258 mRNA processing protei 91.2 27 0.00058 38.3 31.4 122 351-473 296-420 (577)
268 PRK09687 putative lyase; Provi 91.1 19 0.00041 36.4 26.9 181 349-534 34-221 (280)
269 PF02259 FAT: FAT domain; Int 90.9 23 0.0005 37.2 21.2 150 482-633 144-304 (352)
270 KOG4234 TPR repeat-containing 90.9 0.72 1.6E-05 42.3 6.4 87 564-650 104-197 (271)
271 KOG4555 TPR repeat-containing 90.5 0.81 1.8E-05 38.8 5.9 55 595-649 51-105 (175)
272 KOG1920 IkappaB kinase complex 90.3 46 0.001 39.6 22.6 76 328-407 972-1050(1265)
273 PF13176 TPR_7: Tetratricopept 90.3 0.41 8.9E-06 30.8 3.3 26 623-648 1-26 (36)
274 PF13181 TPR_8: Tetratricopept 90.1 0.6 1.3E-05 29.3 4.0 31 589-619 3-33 (34)
275 COG4649 Uncharacterized protei 89.6 5.2 0.00011 36.1 10.4 117 362-478 68-192 (221)
276 PF13176 TPR_7: Tetratricopept 89.6 0.65 1.4E-05 29.8 3.8 28 589-616 1-28 (36)
277 PF13170 DUF4003: Protein of u 88.7 6 0.00013 40.2 11.9 64 500-564 159-226 (297)
278 KOG3941 Intermediate in Toll s 88.5 3.7 7.9E-05 40.0 9.4 104 339-468 52-173 (406)
279 PF13428 TPR_14: Tetratricopep 87.8 1.6 3.4E-05 29.6 5.0 33 486-520 3-35 (44)
280 COG5107 RNA14 Pre-mRNA 3'-end 87.7 40 0.00087 35.5 29.4 91 36-128 30-123 (660)
281 TIGR02561 HrpB1_HrpK type III 87.4 4 8.7E-05 35.9 8.2 54 599-652 22-75 (153)
282 PF09613 HrpB1_HrpK: Bacterial 87.2 3.8 8.2E-05 36.7 8.2 51 599-649 22-72 (160)
283 PF08631 SPO22: Meiosis protei 86.9 37 0.0008 34.3 24.4 20 595-614 254-273 (278)
284 COG4649 Uncharacterized protei 86.6 9.5 0.00021 34.5 10.1 120 495-615 69-195 (221)
285 PF02259 FAT: FAT domain; Int 86.2 33 0.00071 36.0 16.7 68 585-652 144-215 (352)
286 PF00515 TPR_1: Tetratricopept 86.2 1.7 3.7E-05 27.2 4.2 32 485-518 2-33 (34)
287 COG3629 DnrI DNA-binding trans 86.2 3.1 6.6E-05 41.4 7.8 61 589-649 155-215 (280)
288 COG4105 ComL DNA uptake lipopr 85.9 36 0.00078 33.2 17.5 54 359-412 41-100 (254)
289 KOG1585 Protein required for f 85.8 35 0.00076 32.9 16.7 82 285-378 34-117 (308)
290 KOG4648 Uncharacterized conser 85.8 1.3 2.9E-05 44.0 5.1 112 527-645 105-219 (536)
291 KOG2114 Vacuolar assembly/sort 85.8 73 0.0016 36.6 21.9 117 357-480 339-458 (933)
292 PF07035 Mic1: Colon cancer-as 85.7 28 0.00061 31.7 14.9 120 35-164 14-135 (167)
293 COG3629 DnrI DNA-binding trans 85.1 4 8.6E-05 40.6 8.0 76 83-158 155-236 (280)
294 PRK11619 lytic murein transgly 84.9 80 0.0017 36.3 31.7 113 498-613 255-372 (644)
295 PF10602 RPN7: 26S proteasome 84.7 12 0.00025 34.9 10.6 59 454-512 37-101 (177)
296 COG1747 Uncharacterized N-term 84.5 63 0.0014 34.8 21.0 163 452-621 65-239 (711)
297 PF04097 Nic96: Nup93/Nic96; 84.3 20 0.00043 40.9 14.3 27 224-251 111-137 (613)
298 PF00637 Clathrin: Region in C 84.2 0.2 4.4E-06 44.8 -1.2 125 19-161 13-137 (143)
299 PRK12798 chemotaxis protein; R 84.1 60 0.0013 34.2 21.8 179 466-647 125-321 (421)
300 PF09613 HrpB1_HrpK: Bacterial 84.1 29 0.00063 31.3 12.1 87 529-618 20-108 (160)
301 PF10602 RPN7: 26S proteasome 83.8 17 0.00036 33.8 11.3 95 485-581 37-139 (177)
302 KOG1586 Protein required for f 83.5 38 0.00083 32.5 13.0 91 533-623 128-231 (288)
303 KOG2114 Vacuolar assembly/sort 83.4 92 0.002 35.8 28.6 165 208-410 348-517 (933)
304 PRK11619 lytic murein transgly 83.1 94 0.002 35.7 38.7 415 65-557 81-513 (644)
305 PF14853 Fis1_TPR_C: Fis1 C-te 82.9 4.3 9.4E-05 28.8 5.3 31 592-622 6-36 (53)
306 PF00637 Clathrin: Region in C 82.7 1.6 3.5E-05 38.9 4.0 86 287-379 12-97 (143)
307 PF13170 DUF4003: Protein of u 82.6 60 0.0013 33.1 16.3 127 399-527 78-225 (297)
308 KOG1464 COP9 signalosome, subu 82.0 53 0.0012 32.1 18.7 150 457-617 149-329 (440)
309 KOG4279 Serine/threonine prote 81.9 15 0.00032 41.0 11.2 183 385-621 203-400 (1226)
310 PF07035 Mic1: Colon cancer-as 81.4 43 0.00093 30.6 13.4 32 274-305 21-52 (167)
311 PF13174 TPR_6: Tetratricopept 81.3 3.3 7.2E-05 25.4 4.0 27 593-619 6-32 (33)
312 PF07719 TPR_2: Tetratricopept 81.1 3.6 7.9E-05 25.5 4.2 31 486-518 3-33 (34)
313 KOG0890 Protein kinase of the 80.9 1.9E+02 0.0042 37.7 23.8 304 326-650 1388-1731(2382)
314 PRK10941 hypothetical protein; 80.5 12 0.00026 37.4 9.4 62 589-650 183-244 (269)
315 KOG0276 Vesicle coat complex C 79.9 34 0.00075 37.4 12.8 149 465-647 598-747 (794)
316 KOG1550 Extracellular protein 79.3 1.2E+02 0.0025 34.3 20.9 78 570-650 454-538 (552)
317 cd00923 Cyt_c_Oxidase_Va Cytoc 78.1 12 0.00027 30.1 6.8 63 499-563 22-84 (103)
318 PF14853 Fis1_TPR_C: Fis1 C-te 78.0 11 0.00025 26.7 6.1 26 624-649 4-29 (53)
319 KOG4648 Uncharacterized conser 77.9 12 0.00025 37.7 8.2 86 491-587 104-198 (536)
320 TIGR02561 HrpB1_HrpK type III 77.9 50 0.0011 29.3 12.6 98 293-410 21-120 (153)
321 PRK09687 putative lyase; Provi 77.8 83 0.0018 31.8 26.7 120 417-547 141-262 (280)
322 PF06552 TOM20_plant: Plant sp 77.3 11 0.00025 34.4 7.4 45 603-647 51-99 (186)
323 KOG1586 Protein required for f 77.2 57 0.0012 31.4 12.0 23 598-620 165-187 (288)
324 PF07721 TPR_4: Tetratricopept 77.0 2.6 5.6E-05 24.6 2.3 23 623-645 3-25 (26)
325 KOG4570 Uncharacterized conser 76.7 15 0.00033 36.5 8.5 96 448-547 59-163 (418)
326 COG2976 Uncharacterized protei 76.0 69 0.0015 29.9 14.1 114 502-620 70-192 (207)
327 PF02284 COX5A: Cytochrome c o 75.9 10 0.00022 31.0 5.9 61 502-564 28-88 (108)
328 smart00028 TPR Tetratricopepti 75.6 6.4 0.00014 23.2 4.2 31 589-619 3-33 (34)
329 KOG0276 Vesicle coat complex C 75.5 26 0.00056 38.3 10.5 72 430-512 649-720 (794)
330 PF02284 COX5A: Cytochrome c o 75.5 16 0.00035 29.8 6.9 49 580-628 38-86 (108)
331 KOG3364 Membrane protein invol 75.2 29 0.00062 30.1 8.7 61 589-649 34-99 (149)
332 PF13181 TPR_8: Tetratricopept 75.1 4.3 9.4E-05 25.2 3.2 28 622-649 2-29 (34)
333 cd00923 Cyt_c_Oxidase_Va Cytoc 74.6 17 0.00036 29.4 6.7 50 579-628 34-83 (103)
334 PF13374 TPR_10: Tetratricopep 73.7 8.1 0.00017 25.3 4.4 25 590-614 5-29 (42)
335 PF13374 TPR_10: Tetratricopep 73.5 8.2 0.00018 25.2 4.4 28 485-512 3-30 (42)
336 PF06552 TOM20_plant: Plant sp 73.4 18 0.0004 33.1 7.6 46 603-655 96-141 (186)
337 PRK15180 Vi polysaccharide bio 72.0 29 0.00062 36.7 9.6 122 495-620 300-424 (831)
338 PF13174 TPR_6: Tetratricopept 71.0 4.7 0.0001 24.7 2.6 28 623-650 2-29 (33)
339 PF11207 DUF2989: Protein of u 70.5 20 0.00043 33.6 7.4 70 572-641 123-198 (203)
340 PF13431 TPR_17: Tetratricopep 69.7 4.8 0.0001 25.4 2.3 20 555-574 13-32 (34)
341 COG2976 Uncharacterized protei 69.3 1E+02 0.0022 28.9 13.5 88 427-514 98-189 (207)
342 PF13934 ELYS: Nuclear pore co 69.1 1.1E+02 0.0024 29.7 12.8 106 487-601 79-186 (226)
343 PF08631 SPO22: Meiosis protei 68.4 1.4E+02 0.003 30.2 23.9 21 628-648 253-273 (278)
344 COG3947 Response regulator con 68.1 15 0.00033 36.2 6.3 60 590-649 282-341 (361)
345 TIGR02508 type_III_yscG type I 68.1 66 0.0014 26.3 9.7 60 461-523 47-106 (115)
346 KOG0376 Serine-threonine phosp 68.0 15 0.00033 38.9 6.8 87 563-649 12-100 (476)
347 KOG4234 TPR repeat-containing 67.6 65 0.0014 30.1 9.8 28 596-623 177-204 (271)
348 PF04910 Tcf25: Transcriptiona 66.5 1.8E+02 0.0038 30.7 14.9 64 586-649 99-167 (360)
349 KOG0545 Aryl-hydrocarbon recep 65.5 31 0.00067 33.3 7.6 86 564-649 187-292 (329)
350 PF11207 DUF2989: Protein of u 64.8 54 0.0012 30.9 9.0 74 399-473 122-198 (203)
351 KOG1550 Extracellular protein 64.1 2.3E+02 0.0049 32.0 15.8 151 496-653 261-429 (552)
352 COG4455 ImpE Protein of avirul 63.0 30 0.00064 32.8 6.9 64 558-621 4-69 (273)
353 PF10345 Cohesin_load: Cohesin 63.0 2.8E+02 0.0061 31.8 32.0 48 568-615 547-605 (608)
354 PRK15180 Vi polysaccharide bio 62.8 51 0.0011 35.0 9.2 131 461-596 297-434 (831)
355 KOG1308 Hsp70-interacting prot 61.4 5.1 0.00011 40.4 1.9 86 569-654 128-215 (377)
356 KOG2300 Uncharacterized conser 61.3 2.4E+02 0.0052 30.5 27.8 119 394-512 334-473 (629)
357 PF13762 MNE1: Mitochondrial s 61.1 43 0.00093 29.7 7.3 51 112-162 77-128 (145)
358 KOG0403 Neoplastic transformat 60.9 2.3E+02 0.005 30.1 16.4 58 457-514 513-573 (645)
359 KOG2066 Vacuolar assembly/sort 60.5 3.1E+02 0.0068 31.5 25.1 30 323-352 507-536 (846)
360 PF09670 Cas_Cas02710: CRISPR- 60.1 1.1E+02 0.0025 32.4 11.9 121 494-616 141-270 (379)
361 KOG0403 Neoplastic transformat 59.8 2.4E+02 0.0052 30.0 17.9 72 325-396 513-587 (645)
362 PF04097 Nic96: Nup93/Nic96; 59.6 3.2E+02 0.0069 31.3 22.3 20 231-250 264-283 (613)
363 PF04190 DUF410: Protein of un 59.6 1.9E+02 0.0042 28.8 17.0 125 408-547 39-169 (260)
364 PF09986 DUF2225: Uncharacteri 59.6 41 0.00089 32.3 7.7 65 588-652 119-196 (214)
365 PF07163 Pex26: Pex26 protein; 59.3 1E+02 0.0022 30.7 10.0 87 390-476 90-181 (309)
366 PF14561 TPR_20: Tetratricopep 59.3 18 0.00038 29.2 4.4 42 608-649 9-50 (90)
367 PF10366 Vps39_1: Vacuolar sor 58.9 1.1E+02 0.0023 25.7 9.3 26 386-411 42-67 (108)
368 TIGR02508 type_III_yscG type I 58.5 1E+02 0.0022 25.3 9.8 45 329-375 47-91 (115)
369 TIGR03504 FimV_Cterm FimV C-te 58.4 16 0.00035 24.7 3.3 26 625-650 3-28 (44)
370 PRK13800 putative oxidoreducta 56.7 4.4E+02 0.0094 32.0 27.2 48 320-367 788-836 (897)
371 cd08819 CARD_MDA5_2 Caspase ac 56.5 39 0.00085 26.8 5.6 32 335-367 50-81 (88)
372 KOG4570 Uncharacterized conser 55.5 65 0.0014 32.4 8.2 51 398-448 115-165 (418)
373 PF07575 Nucleopor_Nup85: Nup8 55.3 3.6E+02 0.0078 30.6 16.0 45 403-447 390-434 (566)
374 PF10579 Rapsyn_N: Rapsyn N-te 55.0 36 0.00078 26.4 5.0 44 497-540 19-64 (80)
375 PRK13800 putative oxidoreducta 54.7 4.7E+02 0.01 31.7 27.5 42 342-383 625-666 (897)
376 PF10366 Vps39_1: Vacuolar sor 54.4 1.2E+02 0.0026 25.4 8.7 27 486-512 41-67 (108)
377 KOG4642 Chaperone-dependent E3 54.2 27 0.00059 33.5 5.2 80 570-649 25-106 (284)
378 COG5159 RPN6 26S proteasome re 53.7 1.5E+02 0.0033 29.4 10.1 49 491-539 10-65 (421)
379 KOG2063 Vacuolar assembly/sort 53.3 4.6E+02 0.0099 31.2 19.3 130 323-465 506-638 (877)
380 PF12862 Apc5: Anaphase-promot 52.9 45 0.00096 27.1 5.9 52 598-649 9-69 (94)
381 PF07720 TPR_3: Tetratricopept 52.2 43 0.00094 21.5 4.4 31 590-620 4-36 (36)
382 KOG0292 Vesicle coat complex C 51.9 24 0.00051 40.4 5.1 117 497-645 606-722 (1202)
383 PF14863 Alkyl_sulf_dimr: Alky 50.5 60 0.0013 28.7 6.6 64 571-637 57-120 (141)
384 PF13762 MNE1: Mitochondrial s 50.4 1.8E+02 0.0038 25.9 9.3 50 483-532 78-128 (145)
385 smart00386 HAT HAT (Half-A-TPR 50.3 25 0.00053 21.2 3.2 29 601-629 1-29 (33)
386 KOG4077 Cytochrome c oxidase, 50.1 81 0.0018 27.0 6.7 60 502-563 67-126 (149)
387 PF07163 Pex26: Pex26 protein; 49.8 1.5E+02 0.0033 29.5 9.5 87 491-580 90-183 (309)
388 KOG3824 Huntingtin interacting 49.5 44 0.00095 33.3 6.0 51 597-647 126-176 (472)
389 KOG4507 Uncharacterized conser 49.5 43 0.00093 36.5 6.4 101 529-632 617-721 (886)
390 PF14669 Asp_Glu_race_2: Putat 49.1 2.3E+02 0.0049 26.5 13.6 57 423-479 137-207 (233)
391 PF04190 DUF410: Protein of un 49.0 2.9E+02 0.0062 27.6 18.5 165 208-412 4-170 (260)
392 PF07575 Nucleopor_Nup85: Nup8 48.5 3.6E+02 0.0077 30.6 14.2 28 81-109 149-176 (566)
393 PF10579 Rapsyn_N: Rapsyn N-te 48.4 31 0.00068 26.7 3.8 47 531-577 18-65 (80)
394 PF11768 DUF3312: Protein of u 46.7 2.3E+02 0.005 31.2 11.3 55 457-511 412-471 (545)
395 TIGR03504 FimV_Cterm FimV C-te 46.7 40 0.00087 22.8 3.8 24 490-513 5-28 (44)
396 COG5159 RPN6 26S proteasome re 46.5 3.1E+02 0.0068 27.4 11.8 152 393-544 13-190 (421)
397 cd08326 CARD_CASP9 Caspase act 46.2 59 0.0013 25.8 5.3 50 350-399 28-77 (84)
398 KOG4521 Nuclear pore complex, 46.0 5.6E+02 0.012 31.2 14.6 110 459-572 926-1071(1480)
399 PF14561 TPR_20: Tetratricopep 45.1 1.6E+02 0.0034 23.7 7.7 63 586-648 21-86 (90)
400 KOG0890 Protein kinase of the 44.8 9.1E+02 0.02 32.2 31.3 105 520-628 1671-1796(2382)
401 KOG0551 Hsp90 co-chaperone CNS 43.3 1.1E+02 0.0023 31.3 7.6 92 556-647 82-179 (390)
402 PF09477 Type_III_YscG: Bacter 42.7 2E+02 0.0043 24.0 9.0 78 434-514 22-99 (116)
403 cd08819 CARD_MDA5_2 Caspase ac 41.9 1.1E+02 0.0024 24.3 6.0 62 35-98 22-83 (88)
404 PF09477 Type_III_YscG: Bacter 41.2 2.1E+02 0.0046 23.9 11.2 82 295-383 19-100 (116)
405 KOG3807 Predicted membrane pro 40.9 1.7E+02 0.0038 29.6 8.6 53 491-545 282-337 (556)
406 PF10345 Cohesin_load: Cohesin 40.2 6.2E+02 0.014 29.0 36.3 194 182-409 27-251 (608)
407 PRK13342 recombination factor 39.9 5.1E+02 0.011 27.9 13.2 48 385-432 229-279 (413)
408 cd08326 CARD_CASP9 Caspase act 39.7 55 0.0012 26.0 4.2 36 93-130 42-77 (84)
409 KOG2396 HAT (Half-A-TPR) repea 39.3 5.5E+02 0.012 28.1 28.0 370 224-624 104-568 (568)
410 KOG3364 Membrane protein invol 39.3 2.7E+02 0.0058 24.5 8.7 31 591-621 75-105 (149)
411 COG4785 NlpI Lipoprotein NlpI, 39.3 3.6E+02 0.0077 25.9 14.7 27 521-547 239-265 (297)
412 PF04034 DUF367: Domain of unk 39.1 2E+02 0.0044 24.8 7.6 63 550-612 61-124 (127)
413 PRK10941 hypothetical protein; 39.1 1.2E+02 0.0026 30.3 7.5 65 559-623 185-251 (269)
414 KOG1498 26S proteasome regulat 38.9 4.9E+02 0.011 27.4 17.3 192 450-667 49-258 (439)
415 PF11846 DUF3366: Domain of un 37.7 1.2E+02 0.0025 28.6 7.0 36 583-618 140-175 (193)
416 COG2909 MalT ATP-dependent tra 37.7 7.5E+02 0.016 29.2 26.0 309 304-612 329-684 (894)
417 PF11848 DUF3368: Domain of un 37.7 91 0.002 21.5 4.6 36 123-158 11-46 (48)
418 KOG2063 Vacuolar assembly/sort 37.6 7.8E+02 0.017 29.4 17.8 39 97-142 494-532 (877)
419 KOG4077 Cytochrome c oxidase, 37.6 1.4E+02 0.0031 25.6 6.3 48 580-627 77-124 (149)
420 KOG4642 Chaperone-dependent E3 37.1 3E+02 0.0065 26.8 9.1 55 488-544 48-103 (284)
421 KOG2659 LisH motif-containing 36.5 2E+02 0.0043 27.7 8.0 94 485-581 27-129 (228)
422 PF11846 DUF3366: Domain of un 36.0 71 0.0015 30.1 5.3 30 552-581 141-170 (193)
423 cd08332 CARD_CASP2 Caspase act 35.9 1.2E+02 0.0025 24.5 5.6 36 362-397 44-79 (90)
424 COG4976 Predicted methyltransf 35.8 67 0.0014 30.8 4.7 56 565-620 5-62 (287)
425 COG4976 Predicted methyltransf 35.4 57 0.0012 31.2 4.2 54 597-650 5-58 (287)
426 PF12862 Apc5: Anaphase-promot 34.9 1.6E+02 0.0035 23.8 6.5 24 593-616 47-70 (94)
427 KOG0292 Vesicle coat complex C 34.3 4.6E+02 0.0099 30.8 11.4 131 461-615 651-781 (1202)
428 PF11663 Toxin_YhaV: Toxin wit 33.4 50 0.0011 28.6 3.2 31 127-159 108-138 (140)
429 KOG2422 Uncharacterized conser 33.0 5.5E+02 0.012 28.6 11.4 121 529-651 248-408 (665)
430 PF14689 SPOB_a: Sensor_kinase 32.7 57 0.0012 24.0 3.1 27 520-546 24-50 (62)
431 COG0790 FOG: TPR repeat, SEL1 32.5 5.3E+02 0.012 25.9 18.0 49 601-652 205-268 (292)
432 PF11838 ERAP1_C: ERAP1-like C 32.4 5.6E+02 0.012 26.2 18.3 83 534-616 145-230 (324)
433 PF11663 Toxin_YhaV: Toxin wit 32.4 43 0.00092 29.1 2.7 33 495-529 106-138 (140)
434 PHA02875 ankyrin repeat protei 32.4 6.5E+02 0.014 26.9 14.3 70 36-105 16-89 (413)
435 COG1747 Uncharacterized N-term 32.0 7.2E+02 0.016 27.3 22.8 90 385-479 68-157 (711)
436 PRK13342 recombination factor 32.0 6.8E+02 0.015 27.0 17.7 101 415-533 173-279 (413)
437 PRK10564 maltose regulon perip 31.8 81 0.0018 31.7 4.9 41 486-526 259-299 (303)
438 KOG0687 26S proteasome regulat 31.6 5.6E+02 0.012 26.3 10.4 10 723-732 320-329 (393)
439 PF15469 Sec5: Exocyst complex 31.4 3.7E+02 0.008 24.9 9.3 24 524-547 91-114 (182)
440 PHA02875 ankyrin repeat protei 31.1 6.8E+02 0.015 26.8 17.7 44 62-105 11-56 (413)
441 PF11848 DUF3368: Domain of un 30.8 1.7E+02 0.0038 20.1 5.1 31 395-425 14-44 (48)
442 TIGR02710 CRISPR-associated pr 29.9 6.4E+02 0.014 26.7 11.2 125 524-649 135-274 (380)
443 COG2912 Uncharacterized conser 29.8 5E+02 0.011 25.9 9.8 59 591-649 185-243 (269)
444 KOG0686 COP9 signalosome, subu 29.7 7.1E+02 0.015 26.5 13.5 58 322-379 151-214 (466)
445 KOG3824 Huntingtin interacting 29.1 70 0.0015 32.0 3.9 57 567-623 128-186 (472)
446 PRK10564 maltose regulon perip 29.0 97 0.0021 31.2 4.9 36 386-421 260-295 (303)
447 COG3947 Response regulator con 29.0 6.2E+02 0.013 25.6 15.0 41 399-441 149-189 (361)
448 smart00638 LPD_N Lipoprotein N 28.9 8.9E+02 0.019 27.4 23.0 56 354-412 312-368 (574)
449 cd08332 CARD_CASP2 Caspase act 28.9 87 0.0019 25.2 3.9 34 93-128 46-79 (90)
450 PF08225 Antimicrobial19: Pseu 28.6 25 0.00055 19.0 0.5 11 752-762 11-21 (23)
451 COG5108 RPO41 Mitochondrial DN 28.5 4.1E+02 0.0089 30.0 9.7 43 326-368 33-81 (1117)
452 cd08323 CARD_APAF1 Caspase act 28.1 2.2E+02 0.0048 22.7 5.9 34 364-397 40-73 (86)
453 PF14689 SPOB_a: Sensor_kinase 27.9 91 0.002 23.0 3.5 26 487-512 26-51 (62)
454 PF08967 DUF1884: Domain of un 27.5 57 0.0012 25.3 2.3 27 680-706 7-33 (85)
455 PF12968 DUF3856: Domain of Un 27.5 2.8E+02 0.0061 23.7 6.4 21 627-647 106-126 (144)
456 COG4941 Predicted RNA polymera 27.2 7.1E+02 0.015 25.7 10.7 118 500-621 272-399 (415)
457 PF08311 Mad3_BUB1_I: Mad3/BUB 27.1 2.9E+02 0.0062 23.9 7.1 42 605-646 81-124 (126)
458 PF10475 DUF2450: Protein of u 26.3 4.3E+02 0.0094 26.8 9.4 25 387-411 131-155 (291)
459 PRK14700 recombination factor 26.1 6.3E+02 0.014 25.7 9.9 45 389-433 129-176 (300)
460 PF08311 Mad3_BUB1_I: Mad3/BUB 26.1 4.3E+02 0.0093 22.8 9.0 43 502-544 81-124 (126)
461 PF04762 IKI3: IKI3 family; I 26.0 1.2E+03 0.025 28.5 14.1 23 357-379 699-721 (928)
462 PRK02287 hypothetical protein; 25.8 4.6E+02 0.0099 24.1 8.1 60 555-614 107-167 (171)
463 COG5108 RPO41 Mitochondrial DN 24.6 3.9E+02 0.0085 30.1 8.7 72 86-160 33-114 (1117)
464 PF15161 Neuropep_like: Neurop 23.9 32 0.00069 24.1 0.4 18 745-763 11-28 (65)
465 cd00280 TRFH Telomeric Repeat 23.6 2.8E+02 0.0062 25.7 6.4 25 595-620 119-143 (200)
466 PF10255 Paf67: RNA polymerase 23.6 4.9E+02 0.011 27.9 9.1 95 554-648 74-191 (404)
467 COG1488 PncB Nicotinic acid ph 23.2 1.1E+02 0.0025 32.6 4.6 85 685-773 276-365 (405)
468 PF13934 ELYS: Nuclear pore co 23.1 7E+02 0.015 24.2 13.0 107 514-632 74-183 (226)
469 KOG1524 WD40 repeat-containing 23.0 3.5E+02 0.0075 29.5 7.8 60 554-616 572-631 (737)
470 cd02679 MIT_spastin MIT: domai 22.9 58 0.0013 25.4 1.7 48 599-649 20-67 (79)
471 PHA02878 ankyrin repeat protei 22.7 1E+03 0.023 26.1 13.2 70 36-105 51-122 (477)
472 COG2042 Uncharacterized conser 22.4 6E+02 0.013 23.2 8.2 61 549-609 109-170 (179)
473 PF11525 CopK: Copper resistan 22.4 32 0.00069 25.6 0.2 20 767-786 9-28 (73)
474 PHA03100 ankyrin repeat protei 22.3 1E+03 0.023 25.9 17.3 40 36-75 49-95 (480)
475 KOG4507 Uncharacterized conser 21.9 2E+02 0.0043 31.8 5.8 132 516-650 568-705 (886)
476 PF11768 DUF3312: Protein of u 21.6 7.6E+02 0.016 27.4 10.2 57 355-411 411-472 (545)
477 COG4455 ImpE Protein of avirul 21.4 7.5E+02 0.016 23.9 12.6 126 487-621 4-139 (273)
478 PRK13341 recombination factor 20.9 1.4E+03 0.03 26.9 16.0 107 413-533 192-307 (725)
479 COG2178 Predicted RNA-binding 20.1 6.8E+02 0.015 23.6 8.1 104 536-649 20-149 (204)
480 PF11817 Foie-gras_1: Foie gra 20.0 1.9E+02 0.0042 28.5 5.3 8 599-606 230-237 (247)
481 PF00244 14-3-3: 14-3-3 protei 20.0 8.3E+02 0.018 23.9 9.9 57 389-445 7-64 (236)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.9e-132 Score=1167.92 Aligned_cols=753 Identities=34% Similarity=0.577 Sum_probs=714.2
Q ss_pred ccchhHHHHHHhhcCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCC----CCChHHHH
Q 003868 10 RTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP----QPDIVART 85 (790)
Q Consensus 10 ~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~----~~~~~~~~ 85 (790)
.++...++.++.++.+.+. +..|..+++.|.+.|+.|+..+|+.++..|.+.+.++.|.+++..+. .++..++|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~--~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQ--LEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred ccchhhHHHHHHHHHhCCC--HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 4556778999999999999 99999999999999999999999999999999999999999998765 38889999
Q ss_pred HHHHHHhcCCChHHHHHHHhhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh-
Q 003868 86 TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE- 164 (790)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~- 164 (790)
+||++|++.|+++.|.++|++|+. ||+++||++|.+|++.|++++|+++|++|...|+.||.+||+.+|++|+..++
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~--~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPE--RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCC--CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 999999999999999999999999 99999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCCCCeeeHHHHHHHHHhCCChhHH
Q 003868 165 EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAA 244 (790)
Q Consensus 165 ~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 244 (790)
..+. ++|..+.+.|+.||.+++|+||.+|+++ |++++|.++|++|++||+++||+||.+|++.|++++|
T Consensus 204 ~~~~--~~~~~~~~~g~~~~~~~~n~Li~~y~k~---------g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eA 272 (857)
T PLN03077 204 ARGR--EVHAHVVRFGFELDVDVVNALITMYVKC---------GDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG 272 (857)
T ss_pred hhHH--HHHHHHHHcCCCcccchHhHHHHHHhcC---------CCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHH
Confidence 8888 9999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhccc----CCcchhhHHHHhhhhhHH---------HHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHh
Q 003868 245 REFLDGMSE----NVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311 (790)
Q Consensus 245 ~~l~~~m~~----~~~~~~~~li~~~~~~~~---------~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 311 (790)
+++|++|.+ +|.++|+++|.++.+.+. .|...|+.||..+|++++.+|++.|+++.|.++|+.|..
T Consensus 273 l~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~- 351 (857)
T PLN03077 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET- 351 (857)
T ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-
Confidence 999999965 366788888888877665 677788888888888888888888888888888887753
Q ss_pred cCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---------------------------------------CCh
Q 003868 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---------------------------------------RDL 352 (790)
Q Consensus 312 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---------------------------------------~~~ 352 (790)
+|..+||++|.+|++.|++++|.++|++|.+ ++.
T Consensus 352 -------~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~ 424 (857)
T PLN03077 352 -------KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV 424 (857)
T ss_pred -------CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcch
Confidence 4677888888888888888888888888732 344
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 003868 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432 (790)
Q Consensus 353 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 432 (790)
.+||+||.+|++.|++++|.++|++|.++|+++||++|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|
T Consensus 425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g 503 (857)
T PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIG 503 (857)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhc
Confidence 56677777888888888888899999999999999999999999999999999999986 59999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003868 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512 (790)
Q Consensus 433 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 512 (790)
+++.+.++|..+.+.|+.++..++|+|+++|+|+|++++|.++|+.+ .+|.++||+||.+|+++|+.++|+++|++|.+
T Consensus 504 ~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~ 582 (857)
T PLN03077 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE 582 (857)
T ss_pred hHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 003868 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592 (790)
Q Consensus 513 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 592 (790)
.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++++++|+|+|++++|.+++++|+++||..+|++
T Consensus 583 ~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~a 662 (857)
T PLN03077 583 SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGA 662 (857)
T ss_pred cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHH
Confidence 99999999999999999999999999999999997779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEe
Q 003868 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLV 672 (790)
Q Consensus 593 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~ 672 (790)
|+.+|+.+|+.+.|+.+++++++++|+++..|..|+++|+..|+|++|.++++.|+++|++|+||+|||++++++|.|.+
T Consensus 663 Ll~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~ 742 (857)
T PLN03077 663 LLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLT 742 (857)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHcCcccCCccccccCChhhhhhhhhhhhHHHHHHHhhcCCCCCCeEEEEecccccCC
Q 003868 673 DDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGD 752 (790)
Q Consensus 673 ~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~h~~~~a~~~~~~~~~~~~~~~~~~nl~~c~~ 752 (790)
||.+||+.++||..|+++..+|++.||.||+...+ +.++++|+..+++||||||+|||||++|+|+||||+||||||+|
T Consensus 743 ~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~d 821 (857)
T PLN03077 743 DDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCEN 821 (857)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCcc
Confidence 99999999999999999999999999999999877 55788999999999999999999999999999999999999999
Q ss_pred cchhhHhhhhhcCcEEEEecCCcccccCCCccCCCC
Q 003868 753 CHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788 (790)
Q Consensus 753 ~~~~~~~~s~~~~~~i~~~~~~~~h~~~~g~~sc~~ 788 (790)
||+++||||++.+|||||||.+|||||+||+|||||
T Consensus 822 ch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 822 CHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-119 Score=1037.28 Aligned_cols=611 Identities=36% Similarity=0.661 Sum_probs=600.0
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHhhhCC-CCCChhhHHHHHHHHhcchh-hhhhhhhHHHHHHHhCCCCchhHHH
Q 003868 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD-VKPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLN 189 (790)
Q Consensus 112 ~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~ 189 (790)
++..+|+++|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.+. ..+. ++|..+.+.|+.||..++|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~--~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVK--AVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHH--HHHHHHHHhCCCcchHHHH
Confidence 577899999999999999999999999999865 78999999999999999998 8888 9999999999999999999
Q ss_pred HHHHhhhccCCCCccCCCCCHHHHHHHHccCCCCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhh
Q 003868 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269 (790)
Q Consensus 190 ~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~ 269 (790)
.|+.+|+++ |++++|.++|++|++||+++||++|.+|++.|++++|+++|++|
T Consensus 163 ~Li~~y~k~---------g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M------------------ 215 (697)
T PLN03081 163 RVLLMHVKC---------GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREM------------------ 215 (697)
T ss_pred HHHHHHhcC---------CCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHH------------------
Confidence 999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC
Q 003868 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349 (790)
Q Consensus 270 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 349 (790)
...|+.||..||+.++.+|++.|+.+.+.++|..+.+ .|..+|..++|+|+++|+++|++++|.++|++|.+
T Consensus 216 ----~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~----~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 287 (697)
T PLN03081 216 ----WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK----TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE 287 (697)
T ss_pred ----HHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH----hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 7889999999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003868 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429 (790)
Q Consensus 350 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 429 (790)
+|+++||+||.+|++.|+ .++|+++|++|.+.|+.||..||++++.+|+
T Consensus 288 ~~~vt~n~li~~y~~~g~-------------------------------~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~ 336 (697)
T PLN03081 288 KTTVAWNSMLAGYALHGY-------------------------------SEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336 (697)
T ss_pred CChhHHHHHHHHHHhCCC-------------------------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999999888 8999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 003868 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509 (790)
Q Consensus 430 ~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 509 (790)
+.|++++|.++|..+.+.|+.+|..+|++|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++
T Consensus 337 ~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred hccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHH
Q 003868 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589 (790)
Q Consensus 510 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~ 589 (790)
|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++++++|++.|++++|.+++++|+.+|+..+
T Consensus 417 M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~ 496 (697)
T PLN03081 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNM 496 (697)
T ss_pred HHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHH
Confidence 99999999999999999999999999999999999998789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCEEEE
Q 003868 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHV 669 (790)
Q Consensus 590 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~ 669 (790)
|++|+.+|+.+|+++.|..++++++++.|++..+|..|+++|++.|+|++|.++++.|+++|+++.||+||+++++.+|.
T Consensus 497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~ 576 (697)
T PLN03081 497 WAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHS 576 (697)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCcchHHHHHHHHHHHHHHHHcCcccCCccccccCChhhhhhhhhhhhHHHHHHHhhcCCCCCCeEEEEecccc
Q 003868 670 FLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRI 749 (790)
Q Consensus 670 ~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~h~~~~a~~~~~~~~~~~~~~~~~~nl~~ 749 (790)
|.+||..||+..+||..+.++..+|++.||.||+.++++++++++|+..+++||||||+||||+++|+|+||||+|||||
T Consensus 577 f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~ 656 (697)
T PLN03081 577 FFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRI 656 (697)
T ss_pred EccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhhHhhhhhcCcEEEEecCCcccccCCCccCCCCCC
Q 003868 750 CGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790 (790)
Q Consensus 750 c~~~~~~~~~~s~~~~~~i~~~~~~~~h~~~~g~~sc~~~~ 790 (790)
|+|||+|+||||++.+|||||||.+|||||+||+|||+|||
T Consensus 657 c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 657 CKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-73 Score=670.45 Aligned_cols=556 Identities=25% Similarity=0.330 Sum_probs=533.3
Q ss_pred cchhHHHHHHhhcCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCC----CChHHHHH
Q 003868 11 TLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ----PDIVARTT 86 (790)
Q Consensus 11 ~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ 86 (790)
++..+|+.++.+|++.+. ++.|.++|..|...|+.||..+|+.+|.+|++.+++..+.+++..|.+ ||..+||+
T Consensus 150 ~d~~~~n~li~~~~~~g~--~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ 227 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGY--FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227 (857)
T ss_pred CCeeEHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhH
Confidence 567799999999999999 999999999999999999999999999999999999999999998874 89999999
Q ss_pred HHHHHhcCCChHHHHHHHhhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh-h
Q 003868 87 LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE-E 165 (790)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~ 165 (790)
||.+|+++|+++.|.++|++|+. ||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.++ .
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~ 305 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999 8
Q ss_pred hhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCCCCeeeHHHHHHHHHhCCChhHHH
Q 003868 166 EKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245 (790)
Q Consensus 166 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 245 (790)
.+. ++|..+.+.|+.||..++|+||.+|+++ |++++|.++|++|.+||+++||++|.+|+++|++++|+
T Consensus 306 ~a~--~l~~~~~~~g~~~d~~~~n~Li~~y~k~---------g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~ 374 (857)
T PLN03077 306 LGR--EMHGYVVKTGFAVDVSVCNSLIQMYLSL---------GSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKAL 374 (857)
T ss_pred HHH--HHHHHHHHhCCccchHHHHHHHHHHHhc---------CCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHH
Confidence 998 9999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHH
Q 003868 246 EFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325 (790)
Q Consensus 246 ~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 325 (790)
++|++| ...|+.||..||++++.+|++.|+++.|.++|+.+.+ .|..++..++|
T Consensus 375 ~lf~~M----------------------~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~----~g~~~~~~~~n 428 (857)
T PLN03077 375 ETYALM----------------------EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER----KGLISYVVVAN 428 (857)
T ss_pred HHHHHH----------------------HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH----hCCCcchHHHH
Confidence 999999 8899999999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhc---cCChhHHHHHHHHHHhcCChHHH
Q 003868 326 ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR---ERNLLSWTVMISGLAQNGYGEEG 402 (790)
Q Consensus 326 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A 402 (790)
+|+++|+++|++++|.++|++|.++|+++||++|.+|++.|+.++|.++|++|. .||..||+.++.+|++.|..+.+
T Consensus 429 ~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~ 508 (857)
T PLN03077 429 ALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCG 508 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHh
Confidence 999999999999999999999999999999999999999999999999999997 47889999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-
Q 003868 403 LKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN- 481 (790)
Q Consensus 403 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~- 481 (790)
.+++..|.+.|+.+|..++++++..|++.|++++|.++|..+ .+|..+||++|.+|++.|+.++|.++|++|.+
T Consensus 509 ~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~ 583 (857)
T PLN03077 509 KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583 (857)
T ss_pred HHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999886 68999999999999999999999999999974
Q ss_pred ---CCHhHHHHHHHHHHhcCChHHHHHHHHHHH-HcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhH
Q 003868 482 ---VDSVSWNAMIAALGQHGNGARAIELYEQML-KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557 (790)
Q Consensus 482 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 557 (790)
||.+||+++|.+|++.|++++|.++|++|. +.|+.|+..+|+.++.++++.|++++|.+++++| .+.|+..+
T Consensus 584 g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~pd~~~ 659 (857)
T PLN03077 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM----PITPDPAV 659 (857)
T ss_pred CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC----CCCCCHHH
Confidence 899999999999999999999999999999 7899999999999999999999999999999998 46899999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 003868 558 YARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616 (790)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 616 (790)
|++|+.+|...|+.+.|+...+++ ...| +...|..|.+.|...|++++|.++.+.|.+.
T Consensus 660 ~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 660 WGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 999999999999999888777664 4456 4566778888999999999999999999875
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.9e-65 Score=583.84 Aligned_cols=506 Identities=17% Similarity=0.187 Sum_probs=369.8
Q ss_pred CChHHHHHHHHHHhcCCChHHHHHHHhhCCCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHH
Q 003868 79 PDIVARTTLIAAYSASDNVKLAREMFNKTPLK---MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV 155 (790)
Q Consensus 79 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 155 (790)
++...|..+++.+++.|++++|.++|++|+.. .++..+++.++.+|.+.|..++|+++|+.|.. ||..||+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 44445555555555555555555555555542 12333344455555555555555555555542 555555555
Q ss_pred HHHHhcchh-hhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCC----CCCeeeHHH
Q 003868 156 LSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMP----ERDELSWTT 230 (790)
Q Consensus 156 l~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~ 230 (790)
|.+|++.++ ..+. +++..|.+.|+.||..+||+||.+|+++ |++++|.++|++|. .||.++|++
T Consensus 444 L~a~~k~g~~e~A~--~lf~~M~~~Gl~pD~~tynsLI~~y~k~---------G~vd~A~~vf~eM~~~Gv~PdvvTyna 512 (1060)
T PLN03218 444 MSVCASSQDIDGAL--RVLRLVQEAGLKADCKLYTTLISTCAKS---------GKVDAMFEVFHEMVNAGVEANVHTFGA 512 (1060)
T ss_pred HHHHHhCcCHHHHH--HHHHHHHHcCCCCCHHHHHHHHHHHHhC---------cCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 555555555 5555 5555555555666666666666667777 88888888888887 478888999
Q ss_pred HHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 003868 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310 (790)
Q Consensus 231 li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 310 (790)
||.+|++.|++++|+++|++| ...|+.||..||+.+|.+|++.|+++.|.++++.|..
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M----------------------~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIM----------------------RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA 570 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHH----------------------HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999888 7788889999999999999988888888888888865
Q ss_pred hcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC----CChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHH
Q 003868 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE----RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386 (790)
Q Consensus 311 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 386 (790)
.+ .+..||..+|++||++|+++|++++|.++|+.|.+ |+..+||++|.+|++.|+
T Consensus 571 ~~--~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~------------------- 629 (1060)
T PLN03218 571 ET--HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD------------------- 629 (1060)
T ss_pred hc--CCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-------------------
Confidence 11 34566777777777777777777777777777654 344566666666666655
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 003868 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466 (790)
Q Consensus 387 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 466 (790)
+++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.|+.|+..+|++||++|+++
T Consensus 630 ------------~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~ 697 (1060)
T PLN03218 630 ------------WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697 (1060)
T ss_pred ------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHhcCC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 003868 467 GVVEAANCVFNTMP----NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542 (790)
Q Consensus 467 g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 542 (790)
|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|
T Consensus 698 G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~ 777 (1060)
T PLN03218 698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77777777777774 47777788888888777888888888887777777788778887777777777788888888
Q ss_pred HHcccCCCCCCChhHHHHHHHHHH----hc-------------------CChHHHHHHHHhC---CCCCCHHHHHHHHHH
Q 003868 543 ETMHGPYGIPPGEDHYARFIDLLC----RA-------------------GKFSEAKDVIDSL---PFKPSAPIWEALLAG 596 (790)
Q Consensus 543 ~~~~~~~~~~p~~~~~~~li~~~~----~~-------------------g~~~~A~~~~~~~---~~~p~~~~~~~ll~~ 596 (790)
..|.+. |+.||..+|++|++++. ++ +..++|..+|++| ++.||..+|++++.+
T Consensus 778 ~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~c 856 (1060)
T PLN03218 778 SQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGC 856 (1060)
T ss_pred HHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 777775 77777777777776532 22 2246799999998 789999999999987
Q ss_pred HHHhCCHHHHHHHHHHHHh-cCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCCccCCc
Q 003868 597 CRIHGNIDLGIQAAEQLFQ-LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPG 657 (790)
Q Consensus 597 ~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 657 (790)
+.+.+..+.+..+++.+.. -.+++..+|+.|++++.+. .++|..++++|...|+.|+..
T Consensus 857 l~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 857 LQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 7788888888888776543 3566778999999987322 368999999999999998764
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.7e-65 Score=586.57 Aligned_cols=525 Identities=15% Similarity=0.199 Sum_probs=477.9
Q ss_pred ccchhHHHHHHhhcCCCCCCCchHHHHHHHHHHHcCC-CCCcchHHHHHHHHHhcCChhHHHHHhhhCCCCChHHHHHHH
Q 003868 10 RTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGF-KPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLI 88 (790)
Q Consensus 10 ~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li 88 (790)
.++...|..++..|.+.|+ +..|.++++.|.+.|+ .++..+++.++..|.+.|.+++|..+|..|..||..+|+.||
T Consensus 367 ~~~~~~~~~~y~~l~r~G~--l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL 444 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGR--IKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLM 444 (1060)
T ss_pred CCCchHHHHHHHHHHHCcC--HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456778888888888888 9999999999999996 467788889999999999999999999999999999999999
Q ss_pred HHHhcCCChHHHHHHHhhCCCC--CCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh-h
Q 003868 89 AAYSASDNVKLAREMFNKTPLK--MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE-E 165 (790)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~ 165 (790)
.+|++.|+++.|.++|+.|... .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+ .
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 9999999999999999999865 789999999999999999999999999999999999999999999999999999 8
Q ss_pred hhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCC------CCCeeeHHHHHHHHHhCC
Q 003868 166 EKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMP------ERDELSWTTMMTGYVKND 239 (790)
Q Consensus 166 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~------~~~~~~~~~li~~~~~~g 239 (790)
.+. .++..|.+.|+.||..+||.||.+|++. |++++|.++|++|. .||.++|+++|.+|++.|
T Consensus 525 eAl--~lf~~M~~~Gv~PD~vTYnsLI~a~~k~---------G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 525 KAF--GAYGIMRSKNVKPDRVVFNALISACGQS---------GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHH--HHHHHHHHcCCCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 888 9999999999999999999999999999 99999999999995 479999999999999999
Q ss_pred ChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCC
Q 003868 240 YLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319 (790)
Q Consensus 240 ~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 319 (790)
++++|.++|++| .+.|+.|+..+|+.+|.+|++.|++++|.++|..|.+ .|..|
T Consensus 594 ~ldeA~elf~~M----------------------~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~----~Gv~P 647 (1060)
T PLN03218 594 QVDRAKEVYQMI----------------------HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK----KGVKP 647 (1060)
T ss_pred CHHHHHHHHHHH----------------------HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCC
Confidence 999999999999 7889999999999999999999999999999999999 88999
Q ss_pred ChhHHHHHHHHHHHCCCHHHHHHHHhhCCC----CChhHHHHHHHHHHHcCCHHHHHHHHHHhc----cCChhHHHHHHH
Q 003868 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPE----RDLVSWNAILSAYVSAGLIDEAKSLFEAMR----ERNLLSWTVMIS 391 (790)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~ 391 (790)
|..+|++|+++|++.|++++|.++|+.|.+ ||..+|+++|.+|++.|++++|.++|++|. .||..+||.||.
T Consensus 648 D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~ 727 (1060)
T PLN03218 648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT 727 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999999999999999999999974 799999999999999999999999999996 478999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcC
Q 003868 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA----RCG 467 (790)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~----~~g 467 (790)
+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.++|.+|.+.|+.||..+|++|+.++. +++
T Consensus 728 gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~ 807 (1060)
T PLN03218 728 ALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKAC 807 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998743 334
Q ss_pred CHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHccc
Q 003868 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547 (790)
Q Consensus 468 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 547 (790)
+..++...|+.+...+...| .++|+.+|++|++.|+.||..||+.++.+++..+..+.+..+++.|..
T Consensus 808 ~l~~~v~~f~~g~~~~~n~w------------~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~ 875 (1060)
T PLN03218 808 ALGEPVVSFDSGRPQIENKW------------TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI 875 (1060)
T ss_pred hhhhhhhhhhccccccccch------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc
Confidence 44333334433332333333 456999999999999999999999999888888899999999998876
Q ss_pred CCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHH
Q 003868 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL---PFKPSAP 588 (790)
Q Consensus 548 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~ 588 (790)
. +..|+..+|++||+++++. .++|..++++| ++.|+..
T Consensus 876 ~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 876 S-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred C-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 5 7888999999999988432 46899999988 6677664
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.1e-65 Score=588.00 Aligned_cols=465 Identities=25% Similarity=0.409 Sum_probs=444.5
Q ss_pred hHHHHHHhhcCCCCCCCchHHHHHHHHHHHcC-CCCCcchHHHHHHHHHhcCChhHHHHHhhhCCC----CChHHHHHHH
Q 003868 14 NRYASQLQLCDPRNPITSSLARSVHAHMISSG-FKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ----PDIVARTTLI 88 (790)
Q Consensus 14 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li 88 (790)
.++..++..+.+.++ +..|.+++..|...+ +.||..+|+.++.+|++.++++.|.+++..|.+ ||..+||.|+
T Consensus 88 ~~~~~~i~~l~~~g~--~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 88 VSLCSQIEKLVACGR--HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred eeHHHHHHHHHcCCC--HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 478999999999999 999999999999865 789999999999999999999999999999974 9999999999
Q ss_pred HHHhcCCChHHHHHHHhhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh-hhh
Q 003868 89 AAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE-EEK 167 (790)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~ 167 (790)
++|++.|+++.|.++|++|+. ||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.+. ..+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 999999999999999999999 99999999999999999999999999999999999999999999999999999 888
Q ss_pred hhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCCCCeeeHHHHHHHHHhCCChhHHHHH
Q 003868 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREF 247 (790)
Q Consensus 168 ~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 247 (790)
. ++|..+.+.|+.+|..++|+||++|+++ |++++|.++|++|+++|+++||+||.+|+++|++++|+++
T Consensus 244 ~--~l~~~~~~~g~~~d~~~~n~Li~~y~k~---------g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 244 Q--QLHCCVLKTGVVGDTFVSCALIDMYSKC---------GDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred H--HHHHHHHHhCCCccceeHHHHHHHHHHC---------CCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHH
Confidence 8 9999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHH
Q 003868 248 LDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327 (790)
Q Consensus 248 ~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 327 (790)
|++| ...|+.||..||++++.+|++.|+++.|.++|..+.+ .|..+|..++|+|
T Consensus 313 f~~M----------------------~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~----~g~~~d~~~~~~L 366 (697)
T PLN03081 313 YYEM----------------------RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR----TGFPLDIVANTAL 366 (697)
T ss_pred HHHH----------------------HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH----hCCCCCeeehHHH
Confidence 9999 8899999999999999999999999999999999999 8999999999999
Q ss_pred HHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHH
Q 003868 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407 (790)
Q Consensus 328 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 407 (790)
+++|+++|++++|.++|++|.++|+++||+||.+|++.|+ .++|+++|+
T Consensus 367 i~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~-------------------------------~~~A~~lf~ 415 (697)
T PLN03081 367 VDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGR-------------------------------GTKAVEMFE 415 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCC-------------------------------HHHHHHHHH
Confidence 9999999999999999999999999999999999999998 899999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-CCCHh
Q 003868 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH-SGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSV 485 (790)
Q Consensus 408 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~ 485 (790)
+|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++|++|+ .|+..
T Consensus 416 ~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~ 495 (697)
T PLN03081 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVN 495 (697)
T ss_pred HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHH
Confidence 999999999999999999999999999999999999986 5999999999999999999999999999999997 58999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCC
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPD-RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 553 (790)
+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.+. |+..
T Consensus 496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 496 MWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 999999999999999999999999875 6675 468999999999999999999999999886 7653
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.6e-31 Score=318.39 Aligned_cols=596 Identities=14% Similarity=0.037 Sum_probs=348.3
Q ss_pred CCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCC---CChHHHHHHHHHHhcCCChHHHH
Q 003868 25 PRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ---PDIVARTTLIAAYSASDNVKLAR 101 (790)
Q Consensus 25 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 101 (790)
..++ +..|...+....+.+.. +...+..+...+.+.|+++.|...|+...+ .+...+..+...+.+.|++++|.
T Consensus 273 ~~~~--~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 349 (899)
T TIGR02917 273 QKKN--YEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAI 349 (899)
T ss_pred HhcC--HHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHH
Confidence 3466 78888888877765422 222333445566778888888888887654 34556677777788888888888
Q ss_pred HHHhhCCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh-hhhhhhhHHHHHHHh
Q 003868 102 EMFNKTPLK-MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKS 179 (790)
Q Consensus 102 ~~~~~~~~~-~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~~~~~~ 179 (790)
..++.+... +.+...|+.+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...++ ..+. ..+..+.+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~--~~~~~a~~~ 426 (899)
T TIGR02917 350 ATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAI--ADLETAAQL 426 (899)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHH--HHHHHHHhh
Confidence 888776554 3456677888888888888888888888877643 1233445555555566666 5555 666665554
Q ss_pred CCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCc
Q 003868 180 GTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE---RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256 (790)
Q Consensus 180 g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 256 (790)
... .......++..|.+. |++++|..+++.+.. .+..+|+.+...|...|++++|.+.|+++.+.+.
T Consensus 427 ~~~-~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 496 (899)
T TIGR02917 427 DPE-LGRADLLLILSYLRS---------GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP 496 (899)
T ss_pred CCc-chhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Confidence 432 233445566777777 888888888877653 3566778888888888888888888887643211
Q ss_pred ---chhhHHHHhhhhhHH---------HHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHH
Q 003868 257 ---VAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324 (790)
Q Consensus 257 ---~~~~~li~~~~~~~~---------~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 324 (790)
..+..+...+...|. ++... .+.+..++..+...+...|+.++|...+..+.. .+ +.+...+
T Consensus 497 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~-~~~~~~~ 570 (899)
T TIGR02917 497 DFFPAAANLARIDIQEGNPDDAIQRFEKVLTI-DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE----LN-PQEIEPA 570 (899)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hC-ccchhHH
Confidence 112222222221111 11111 122344455555555556666666666655554 22 2234455
Q ss_pred HHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCC
Q 003868 325 NALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNAILSAYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGLAQNGY 398 (790)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~ 398 (790)
..++..|.+.|++++|..+++.+.+ .+...|..+...|.+.|++++|...|+++.+. +...|..+...|.+.|+
T Consensus 571 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 650 (899)
T TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKN 650 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 5555666666666666666655542 24445566666666666666666666555432 33455555666666666
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 003868 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478 (790)
Q Consensus 399 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 478 (790)
+++|...|+++.... +.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...|.+.|++++|.+.|+.
T Consensus 651 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 728 (899)
T TIGR02917 651 YAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRK 728 (899)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666666655432 2234455555555666666666666666655543 33444555555666666666666666655
Q ss_pred CCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChh
Q 003868 479 MPN--VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556 (790)
Q Consensus 479 ~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 556 (790)
+.. |+..++..++..+.+.|++++|.+.++++.+. .+.+...+..+...|...|+.++|.++|+.+.+. .+++..
T Consensus 729 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~ 805 (899)
T TIGR02917 729 ALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAV 805 (899)
T ss_pred HHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHH
Confidence 432 33345555555666666666666666665553 1223345555555566666666666666665542 234455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhc
Q 003868 557 HYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL 634 (790)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 634 (790)
.+..+...+.+.|+ .+|++.+++. ...| +..++..+...+...|++++|...++++++..|.++.++..++.+|.+.
T Consensus 806 ~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 884 (899)
T TIGR02917 806 VLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLAT 884 (899)
T ss_pred HHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Confidence 55666666666666 5566665554 2222 3345555555566666666666666666666666666666666666666
Q ss_pred CChhHHHHHHHHHH
Q 003868 635 GRWDDAARVRKLMR 648 (790)
Q Consensus 635 g~~~~a~~~~~~m~ 648 (790)
|++++|.+++++|.
T Consensus 885 g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 885 GRKAEARKELDKLL 898 (899)
T ss_pred CCHHHHHHHHHHHh
Confidence 66666666666553
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2e-30 Score=312.90 Aligned_cols=612 Identities=12% Similarity=0.044 Sum_probs=489.3
Q ss_pred hhHHHHHHhhcCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCC--CC-hHHHHHHHH
Q 003868 13 ANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ--PD-IVARTTLIA 89 (790)
Q Consensus 13 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~ 89 (790)
...+..+...+...++ ...|...++.+.+.... +..........+...|+++.|...|+.+.+ |+ ...+..+..
T Consensus 227 ~~~~~~~~~~~~~~g~--~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 303 (899)
T TIGR02917 227 PAVLLALATILIEAGE--FEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGA 303 (899)
T ss_pred HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 3445555566666778 99999999999886543 333333344556678999999999998875 33 334445566
Q ss_pred HHhcCCChHHHHHHHhhCCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh-hhh
Q 003868 90 AYSASDNVKLAREMFNKTPLK-MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE-EEK 167 (790)
Q Consensus 90 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~ 167 (790)
.+...|+++.|...|+..... +.+...+..+...+.+.|++++|+..++.+.... ..+...+..+...+...++ ..+
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 382 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKA 382 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 788899999999999987654 3456678889999999999999999999998654 3456678888888888888 777
Q ss_pred hhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCCC---CeeeHHHHHHHHHhCCChhHH
Q 003868 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER---DELSWTTMMTGYVKNDYLDAA 244 (790)
Q Consensus 168 ~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A 244 (790)
. ..+..+.+... .+...+..+...|... |+.++|.+.|+..... +...+..++..+.+.|++++|
T Consensus 383 ~--~~~~~~~~~~~-~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 450 (899)
T TIGR02917 383 A--EYLAKATELDP-ENAAARTQLGISKLSQ---------GDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKA 450 (899)
T ss_pred H--HHHHHHHhcCC-CCHHHHHHHHHHHHhC---------CChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHH
Confidence 7 77777766542 3556777788888888 9999999999877542 455677888999999999999
Q ss_pred HHHHHhcccC---CcchhhHHHHhhhhhHH-----HHHH--hCccC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 003868 245 REFLDGMSEN---VGVAWNALISGYVHREL-----KMLM--LRIQL-DEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313 (790)
Q Consensus 245 ~~l~~~m~~~---~~~~~~~li~~~~~~~~-----~m~~--~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 313 (790)
.++++.+... +...|+.+...+.+.+. .... ....| +...+..+...+...|+++.|.+.+..+..
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--- 527 (899)
T TIGR02917 451 LAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLT--- 527 (899)
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---
Confidence 9999998654 33456666666655544 1111 12233 345566777778888899999998888886
Q ss_pred CCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhcc---CChhHHH
Q 003868 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNAILSAYVSAGLIDEAKSLFEAMRE---RNLLSWT 387 (790)
Q Consensus 314 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~ 387 (790)
.. +.+..++..+...|.+.|+.++|...|+++.+ .+...+..++..|.+.|++++|..+++.+.+ .+...|.
T Consensus 528 -~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 605 (899)
T TIGR02917 528 -ID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWL 605 (899)
T ss_pred -hC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 33 33677888888889999999999999888753 3556778888899999999999999988875 3557899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 003868 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467 (790)
Q Consensus 388 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g 467 (790)
.++..|.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|..++..+.+.. +.+...+..++..+.+.|
T Consensus 606 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 683 (899)
T TIGR02917 606 MLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAK 683 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999988753 3456677788888889999999999999888764 456778889999999999
Q ss_pred CHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 003868 468 VVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544 (790)
Q Consensus 468 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 544 (790)
++++|.++++.+.+ .+...|..+...+...|++++|++.|+++.. ..|+..++..+..++.+.|++++|.+.++.
T Consensus 684 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 761 (899)
T TIGR02917 684 RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK--RAPSSQNAIKLHRALLASGNTAEAVKTLEA 761 (899)
T ss_pred CHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998864 4667788888999999999999999999998 457777888889999999999999999999
Q ss_pred cccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc
Q 003868 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-P-FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622 (790)
Q Consensus 545 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 622 (790)
+.+ ..+.+...+..+...|.+.|++++|.+.|+++ . .+++..+++.+...+...|+ ++|+..++++++..|+++.
T Consensus 762 ~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~ 838 (899)
T TIGR02917 762 WLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPA 838 (899)
T ss_pred HHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcH
Confidence 887 45667888999999999999999999999987 2 33467889999999999999 8899999999999999999
Q ss_pred chHhhHHHHHhcCChhHHHHHHHHHHhCCC
Q 003868 623 TYVLLSNMYANLGRWDDAARVRKLMRDRGV 652 (790)
Q Consensus 623 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 652 (790)
.+..++.+|...|++++|.++++++.+.+.
T Consensus 839 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 839 ILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999987554
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.97 E-value=2.4e-31 Score=223.99 Aligned_cols=106 Identities=60% Similarity=1.119 Sum_probs=97.1
Q ss_pred ceeEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCcccCCccccccCChhhh--------hhhhhhhhHHHHH
Q 003868 657 GCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQK--------EYALSTHSEKLAV 728 (790)
Q Consensus 657 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~h~~~~a~ 728 (790)
|+||+++ |.|++||.+||+. ++..++...||.|++....|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899987 9999999999988 556677888999999999888877655 5688999999999
Q ss_pred HHhhcCCCCCCeEEEEecc-cccCCcchhhHhhhhhcCcEEEEecCCcccccC
Q 003868 729 AFGLMKLPGGATVRVLKNL-RICGDCHNAFKFMSKVVGREIVVRDGKRFHHFR 780 (790)
Q Consensus 729 ~~~~~~~~~~~~~~~~~nl-~~c~~~~~~~~~~s~~~~~~i~~~~~~~~h~~~ 780 (790)
|||++++ +|+||+ |||+|||+++|+||++.+|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999997
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=2.8e-22 Score=242.30 Aligned_cols=407 Identities=12% Similarity=0.046 Sum_probs=320.2
Q ss_pred CCHHHHHHHHccCCC--C-CeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChh-
Q 003868 208 SLMGAARRVFDEMPE--R-DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEF- 283 (790)
Q Consensus 208 g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~- 283 (790)
|++++|...|++..+ | +...+..+...|.+.|++++|+..|++..+. .|+..
T Consensus 283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~------------------------~p~~~~ 338 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL------------------------DPHSSN 338 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------CCCccc
Confidence 999999999987753 3 6778999999999999999999999976321 22211
Q ss_pred --hH------------HHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC
Q 003868 284 --TY------------TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349 (790)
Q Consensus 284 --t~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 349 (790)
.+ ......+.+.|++++|...+..++. ..+ .+...+..+..+|...|++++|++.|++..+
T Consensus 339 ~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~----~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~ 413 (1157)
T PRK11447 339 RDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQ----VDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALR 413 (1157)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11 1223456788999999999999997 443 3567788899999999999999999999875
Q ss_pred --C-ChhHHHHHHHHHHHcCCHHHHHHHHHHhccCC------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003868 350 --R-DLVSWNAILSAYVSAGLIDEAKSLFEAMRERN------------LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF 414 (790)
Q Consensus 350 --~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 414 (790)
| +...+..+...|. .++.++|..+++.+.... ...+..+...+...|++++|++.|++..+..
T Consensus 414 ~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~- 491 (1157)
T PRK11447 414 MDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD- 491 (1157)
T ss_pred hCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 3 4556667777764 567899999998876432 2245667788899999999999999998853
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC----CH------
Q 003868 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV----DS------ 484 (790)
Q Consensus 415 ~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~------ 484 (790)
+-+...+..+...+.+.|++++|...++.+.+.. +.+...+..+...+.+.|+.++|...++.++.. +.
T Consensus 492 P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~ 570 (1157)
T PRK11447 492 PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQR 570 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHH
Confidence 2245567778888999999999999999998753 345555556666778899999999999988642 11
Q ss_pred ---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHH
Q 003868 485 ---VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF 561 (790)
Q Consensus 485 ---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 561 (790)
..+..+...+...|+.++|+.+++. ..++...+..+...+...|++++|+..|+.+.+. .+.+...+..+
T Consensus 571 l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~l 643 (1157)
T PRK11447 571 LQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGL 643 (1157)
T ss_pred HhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 1123456778899999999999872 2344456777888999999999999999999863 34567889999
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc------chHhhHHHHHh
Q 003868 562 IDLLCRAGKFSEAKDVIDSLP-FKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG------TYVLLSNMYAN 633 (790)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~ 633 (790)
+..|...|++++|++.++... ..| +..++..+..++...|++++|.+.++++++..|+++. .+..++.++..
T Consensus 644 a~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~ 723 (1157)
T PRK11447 644 IEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQ 723 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHH
Confidence 999999999999999999873 344 4567778888899999999999999999998766543 56667999999
Q ss_pred cCChhHHHHHHHHHH-hCCCc
Q 003868 634 LGRWDDAARVRKLMR-DRGVK 653 (790)
Q Consensus 634 ~g~~~~a~~~~~~m~-~~g~~ 653 (790)
.|++++|.+.+++.. ..|+.
T Consensus 724 ~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 724 TGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred cCCHHHHHHHHHHHHhhcCCC
Confidence 999999999999885 44454
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.2e-21 Score=236.76 Aligned_cols=588 Identities=14% Similarity=0.078 Sum_probs=423.3
Q ss_pred chhHHHHHHhhcCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCC--CChHHH-----
Q 003868 12 LANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ--PDIVAR----- 84 (790)
Q Consensus 12 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~~~~~----- 84 (790)
+.+.+....+-+...++ .+.|.+.+.++.... +.++..+..+...+.+.|+.++|.+.+++..+ |+...+
T Consensus 27 ~~~~Ll~q~~~~~~~~~--~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~ 103 (1157)
T PRK11447 27 AQQQLLEQVRLGEATHR--EDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRT 103 (1157)
T ss_pred HHHHHHHHHHHHHhhCC--hHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 33446666677777777 899999999888764 33677788888999999999999999999876 443222
Q ss_pred ------------HHHHHHHhcCCChHHHHHHHhhCCCC-CCCcch-HHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCh-
Q 003868 85 ------------TTLIAAYSASDNVKLAREMFNKTPLK-MRDTVF-YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN- 149 (790)
Q Consensus 85 ------------~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~-~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 149 (790)
..+...+.+.|++++|.+.|+..... +++... ...........|+.++|++.|+++.+. .|+.
T Consensus 104 ~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~--~P~~~ 181 (1157)
T PRK11447 104 TMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD--YPGNT 181 (1157)
T ss_pred HHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh--CCCCH
Confidence 22334678899999999999987765 233211 111111223458999999999999976 3543
Q ss_pred hhHHHHHHHHhcchh-hhhhhhhHHHHHHHhCCC----------------Cch---hHHHHHHHhhhccCCCCccCCCCC
Q 003868 150 FTFTSVLSALALIVE-EEKQCMQMHCTVVKSGTG----------------LFT---SVLNALISVYVKCVSSPFVSSRSL 209 (790)
Q Consensus 150 ~t~~~ll~~~~~~~~-~~~~~~~~~~~~~~~g~~----------------~~~---~~~~~li~~y~~~~~~~~~~~~g~ 209 (790)
..+..+-..+...++ .++. ..+..+.+.... ++. ..+...+..+-.. ..
T Consensus 182 ~~~~~LA~ll~~~g~~~eAl--~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~---------~~ 250 (1157)
T PRK11447 182 GLRNTLALLLFSSGRRDEGF--AVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDG---------DS 250 (1157)
T ss_pred HHHHHHHHHHHccCCHHHHH--HHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCc---------hH
Confidence 344555555656666 5565 666665443211 000 1111112222221 33
Q ss_pred HHHHHHHHccCCC--CCee-eHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccC-ChhhH
Q 003868 210 MGAARRVFDEMPE--RDEL-SWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQL-DEFTY 285 (790)
Q Consensus 210 ~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p-~~~t~ 285 (790)
.+.|...+..... .|.. ........+...|++++|+..|++.. ...| +...+
T Consensus 251 ~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL------------------------~~~P~~~~a~ 306 (1157)
T PRK11447 251 VAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAV------------------------RANPKDSEAL 306 (1157)
T ss_pred HHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHH------------------------HhCCCCHHHH
Confidence 4556666654321 1211 11233566788999999999999762 2345 56778
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCC-hhHH------------HHHHHHHHHCCCHHHHHHHHhhCCC---
Q 003868 286 TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS-LPVN------------NALVTLYWKCGKVNEARDIFNQMPE--- 349 (790)
Q Consensus 286 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~------------~~li~~~~~~g~~~~A~~~f~~m~~--- 349 (790)
..+...+.+.|+.++|...++..++ ..+... ...+ ..+...+.+.|++++|...|++..+
T Consensus 307 ~~Lg~~~~~~g~~~eA~~~l~~Al~----~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P 382 (1157)
T PRK11447 307 GALGQAYSQQGDRARAVAQFEKALA----LDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN 382 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH----hCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 8888999999999999999999987 333221 1111 2335577899999999999999875
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--------CCH
Q 003868 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK--------PCD 418 (790)
Q Consensus 350 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--------p~~ 418 (790)
.+...+..+...|...|++++|++.|++..+. +...+..+...|. .++.++|+.+++.+...... ...
T Consensus 383 ~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~ 461 (1157)
T PRK11447 383 TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQN 461 (1157)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 35667888899999999999999999998863 3456777777775 45789999988765432100 011
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CHhHHHHHHHHHH
Q 003868 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--V-DSVSWNAMIAALG 495 (790)
Q Consensus 419 ~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~ 495 (790)
..+..+...+...|++++|.+.++++++.. +.+..++..+...|.+.|++++|...|+++.+ | +...+..+...+.
T Consensus 462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~ 540 (1157)
T PRK11447 462 DRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLS 540 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 234455667788999999999999999874 44567788899999999999999999998743 3 5556666666677
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChh---------hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHH
Q 003868 496 QHGNGARAIELYEQMLKEGILPDRI---------TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566 (790)
Q Consensus 496 ~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 566 (790)
..|+.++|+..++++......++.. .+..+...+...|+.++|.++++. .+++...+..+.+.+.
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~ 614 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQ 614 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHH
Confidence 8999999999998865432222221 233456678899999999999882 2456667788999999
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHH
Q 003868 567 RAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVR 644 (790)
Q Consensus 567 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 644 (790)
+.|++++|++.|++. ...| +...+..+...+...|+.++|++.++++.+..|+++..+..++.++...|++++|.+++
T Consensus 615 ~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 694 (1157)
T PRK11447 615 QRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTF 694 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999986 3445 57789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q 003868 645 KLMRDRG 651 (790)
Q Consensus 645 ~~m~~~g 651 (790)
+++....
T Consensus 695 ~~al~~~ 701 (1157)
T PRK11447 695 NRLIPQA 701 (1157)
T ss_pred HHHhhhC
Confidence 9987643
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=5.1e-19 Score=204.10 Aligned_cols=589 Identities=11% Similarity=-0.007 Sum_probs=393.5
Q ss_pred CCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCC--CChHHHHHHHHHHhcCCChHHHH
Q 003868 24 DPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ--PDIVARTTLIAAYSASDNVKLAR 101 (790)
Q Consensus 24 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~ 101 (790)
...|+ ...|...+.+..+..... ...+..|...|.+.|+.++|+..+++..+ |+-..+..++..+ ++.++|.
T Consensus 55 ~~~Gd--~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNND--EATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HhCCC--HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHH
Confidence 34477 888999999988876443 77888888999999999999999998876 4433343333333 8888999
Q ss_pred HHHhhCCCCCC-CcchHHHHHHH--------HHhCCCchHHHHHHHHhhhCCCCCChhhHHHH-HHHHhcchh-hhhhhh
Q 003868 102 EMFNKTPLKMR-DTVFYNAMITA--------YSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV-LSALALIVE-EEKQCM 170 (790)
Q Consensus 102 ~~~~~~~~~~~-~~~~~n~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~-~~~~~~ 170 (790)
.+++++....| +...+..+... |.+. ++|.+.++ .+.....|+..+.... .+.+...++ ..+.
T Consensus 129 ~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai-- 202 (987)
T PRK09782 129 TTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQAD-- 202 (987)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH--
Confidence 99988876633 34444444444 5555 44444444 3333344455555555 777877777 6677
Q ss_pred hHHHHHHHhCCCCchhHHHHHHHhhhc-cCCCCccCCCCCHHHHHHHHccCCCCCeeeHHHHHHHHHhCCChhHHHHHHH
Q 003868 171 QMHCTVVKSGTGLFTSVLNALISVYVK-CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD 249 (790)
Q Consensus 171 ~~~~~~~~~g~~~~~~~~~~li~~y~~-~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 249 (790)
.+...+.+.+... ..-...|-..|.. . ++ +.|..+++...+.|...+..++..|.+.|+.++|.++++
T Consensus 203 ~lL~~L~k~~pl~-~~~~~~L~~ay~q~l---------~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~ 271 (987)
T PRK09782 203 TLYNEARQQNTLS-AAERRQWFDVLLAGQ---------LD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLI 271 (987)
T ss_pred HHHHHHHhcCCCC-HHHHHHHHHHHHHhh---------CH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7888888887543 3435555557776 4 55 888888776555688889999999999999999999999
Q ss_pred hcccCCc-----chhhHHHHh------------------------------hhhhHH----HHHHhCccCChhhHHHHHH
Q 003868 250 GMSENVG-----VAWNALISG------------------------------YVHREL----KMLMLRIQLDEFTYTSVIS 290 (790)
Q Consensus 250 ~m~~~~~-----~~~~~li~~------------------------------~~~~~~----~m~~~~~~p~~~t~~~ll~ 290 (790)
+++..+. .+|--++.- +.+++. +.. ....|..... .++
T Consensus 272 ~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~r 348 (987)
T PRK09782 272 ENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL-LATLPANEML--EER 348 (987)
T ss_pred hCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH-hcCCCcchHH--HHH
Confidence 9865311 122222211 111111 111 2344433321 222
Q ss_pred HHH--ccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC-C-----ChhHHHHHHHHH
Q 003868 291 ACA--NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE-R-----DLVSWNAILSAY 362 (790)
Q Consensus 291 ~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~-----~~~~~~~li~~~ 362 (790)
... ..+...++.+.+..+.+ .. +-+.....-+.-...+.|+.++|.++|..... + +...-+.++..|
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~y~----~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 423 (987)
T PRK09782 349 YAVSVATRNKAEALRLARLLYQ----QE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLL 423 (987)
T ss_pred HhhccccCchhHHHHHHHHHHh----cC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHH
Confidence 221 22445555555555554 21 12444455555566778888888888887654 1 223344666777
Q ss_pred HHcCC---HHHHHHH-------------------------HHHhcc---C--ChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 003868 363 VSAGL---IDEAKSL-------------------------FEAMRE---R--NLLSWTVMISGLAQNGYGEEGLKLFSQM 409 (790)
Q Consensus 363 ~~~g~---~~~A~~~-------------------------~~~m~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m 409 (790)
.+.+. ..++..+ +..... . +...|..+...+.. ++.++|+..+.+.
T Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~A 502 (987)
T PRK09782 424 ESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQA 502 (987)
T ss_pred HhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHH
Confidence 77665 2333222 111111 1 45567777777776 7888888877777
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHH-
Q 003868 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN- 488 (790)
Q Consensus 410 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~- 488 (790)
... .|+......+..++...|++++|...++.+... +|+...+..+...+.+.|+.++|.+.|+...+.++..++
T Consensus 503 l~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l 578 (987)
T PRK09782 503 EQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNAL 578 (987)
T ss_pred HHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHH
Confidence 654 466555444455556888899998888887554 344444566777888888998888888877653322222
Q ss_pred --HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHH
Q 003868 489 --AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566 (790)
Q Consensus 489 --~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 566 (790)
.+.......|++++|+..|++..+ ..|+...+..+..++.+.|++++|...++...+ ..+.+...+..+...+.
T Consensus 579 ~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 579 YWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALW 654 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 233333445889999999988887 567777888888888888999999998888875 23445677788888888
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHH
Q 003868 567 RAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVR 644 (790)
Q Consensus 567 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 644 (790)
..|++++|++.+++. ...| +...+..+..++...|++++|+..++++++++|++..+....+++..+..+++.|.+-+
T Consensus 655 ~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 655 DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 889999998888875 3445 56678888888888899999999999999999988888888888888888888888877
Q ss_pred HHHHhCCC
Q 003868 645 KLMRDRGV 652 (790)
Q Consensus 645 ~~m~~~g~ 652 (790)
++.-...+
T Consensus 735 ~r~~~~~~ 742 (987)
T PRK09782 735 GRRWTFSF 742 (987)
T ss_pred HHHhhcCc
Confidence 77654333
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=9.5e-18 Score=193.64 Aligned_cols=533 Identities=12% Similarity=0.029 Sum_probs=363.8
Q ss_pred hcCChhHHHHHhhhCCC---CChHHHHHHHHHHhcCCChHHHHHHHhhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHH
Q 003868 62 KSLKLVYARTLFDEIPQ---PDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFR 138 (790)
Q Consensus 62 ~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~ 138 (790)
..|++++|...|++..+ .+..++..|...|.+.|+.++|+..+++.....|+-..|..++..+ ++.++|..+++
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye 132 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVE 132 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHH
Confidence 34999999999999875 3467889999999999999999999998887644434444434333 88999999999
Q ss_pred HhhhCCCCCChh-hHHHHHHH--------HhcchhhhhhhhhHHHHHHHhCCCCchhHHHHH-HHhhhccCCCCccCCCC
Q 003868 139 DMRRDDVKPDNF-TFTSVLSA--------LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL-ISVYVKCVSSPFVSSRS 208 (790)
Q Consensus 139 ~m~~~g~~p~~~-t~~~ll~~--------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l-i~~y~~~~~~~~~~~~g 208 (790)
++.+. .|+.. ++..+... +...+. +. .... .......|+..+.... ...|.+. |
T Consensus 133 ~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~eq--Al--~AL~-lr~~~~~~~~~vL~L~~~rlY~~l---------~ 196 (987)
T PRK09782 133 ELLAQ--QKACDAVPTLRCRSEVGQNALRLAQLPV--AR--AQLN-DATFAASPEGKTLRTDLLQRAIYL---------K 196 (987)
T ss_pred HHHHh--CCCChhHHHHHHHHhhccchhhhhhHHH--HH--HHHH-HhhhCCCCCcHHHHHHHHHHHHHH---------h
Confidence 99976 45433 33333332 333322 22 2333 3333344456555555 8999999 9
Q ss_pred CHHHHHHHHccCCCC---CeeeHHHHHHHHHhC-CChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhh
Q 003868 209 LMGAARRVFDEMPER---DELSWTTMMTGYVKN-DYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFT 284 (790)
Q Consensus 209 ~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t 284 (790)
++++|+.++.++.+. +..-+..|-..|.++ ++ +++..+++...+. |...
T Consensus 197 dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~--------------------------d~~l 249 (987)
T PRK09782 197 QWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFT--------------------------DPQS 249 (987)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhccc--------------------------CHHH
Confidence 999999999988754 333456666778873 66 8888886643323 3444
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCC----------------------------ChhHHHHHHHHHHHCCC
Q 003868 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF----------------------------SLPVNNALVTLYWKCGK 336 (790)
Q Consensus 285 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~li~~~~~~g~ 336 (790)
...+...+.+.|+.++|.+++..+...... .+.+ -....-.+++.+.+.++
T Consensus 250 ~~ala~~yi~~G~~~~A~~~L~~~~~~~~~-~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (987)
T PRK09782 250 RITYATALAYRGEKARLQHYLIENKPLFTT-DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQ 328 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCcccccC-CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccH
Confidence 444455555555555555444443221000 0000 01112233667777777
Q ss_pred HHHHHHHHhhCCC-------------------------------C-ChhHHHHHHHHHHHcCCHHHHHHHHHHhccC---
Q 003868 337 VNEARDIFNQMPE-------------------------------R-DLVSWNAILSAYVSAGLIDEAKSLFEAMRER--- 381 (790)
Q Consensus 337 ~~~A~~~f~~m~~-------------------------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 381 (790)
++.+.++.+.-+. | +....--+---..+.|+.++|..+|+.....
T Consensus 329 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~ 408 (987)
T PRK09782 329 YDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGD 408 (987)
T ss_pred HHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcc
Confidence 7766666442221 0 1111112222356778899999999888762
Q ss_pred ---ChhHHHHHHHHHHhcCC---hHHHHHH----------------------HHHHHHc-CC-CC--CHHHHHHHHHHHH
Q 003868 382 ---NLLSWTVMISGLAQNGY---GEEGLKL----------------------FSQMRLE-GF-KP--CDYAFAGAITSCA 429 (790)
Q Consensus 382 ---~~~~~~~li~~~~~~g~---~~~A~~~----------------------~~~m~~~-g~-~p--~~~t~~~ll~~~~ 429 (790)
+...-+.++..|.+.+. ..+++.+ ....... +. ++ +...+..+..++.
T Consensus 409 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~ 488 (987)
T PRK09782 409 ARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYR 488 (987)
T ss_pred cccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHH
Confidence 12244477777777765 3333333 1111111 12 23 4555666665555
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHH
Q 003868 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--VDSVSWNAMIAALGQHGNGARAIELY 507 (790)
Q Consensus 430 ~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~ 507 (790)
. +..++|...+....... |+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...|
T Consensus 489 ~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 489 D-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred h-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5 78888999888777654 4544444455556789999999999997654 45556777788899999999999999
Q ss_pred HHHHHcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 003868 508 EQMLKEGILPDRI-TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP 585 (790)
Q Consensus 508 ~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 585 (790)
++..+. .|+.. .+..+.......|++++|...+++..+ ..|+...|..+..++.+.|++++|++.+++. ...|
T Consensus 566 ~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P 640 (987)
T PRK09782 566 QQAEQR--GLGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEP 640 (987)
T ss_pred HHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 999984 45553 333344455567999999999999985 4678889999999999999999999999986 4556
Q ss_pred -CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 586 -SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 586 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+...+..+..++...|+.++|+..++++++..|+++..+..++.+|...|++++|...+++..+
T Consensus 641 d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 641 NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4567888888999999999999999999999999999999999999999999999999999975
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=7.5e-19 Score=179.07 Aligned_cols=385 Identities=16% Similarity=0.159 Sum_probs=297.0
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccC-ChhhHHHHHHHHHccCChHHHHHH
Q 003868 226 LSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQL-DEFTYTSVISACANSGLFRLGKQV 304 (790)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~ 304 (790)
.+|..+...+-..|++++|+.+++.|. .++| ....|..+..++...|+.+.|.+.
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~ai------------------------el~p~fida~inla~al~~~~~~~~a~~~ 172 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAI------------------------ELKPKFIDAYINLAAALVTQGDLELAVQC 172 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHH------------------------hcCchhhHHHhhHHHHHHhcCCCcccHHH
Confidence 345555566666666666666666552 2223 234455555666666666666666
Q ss_pred HHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHHcCCHHHHHHHHHHhccC
Q 003868 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--RD-LVSWNAILSAYVSAGLIDEAKSLFEAMRER 381 (790)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 381 (790)
+...++ .++. ...+.+.+.......|++++|...+.+..+ |. .+.|+.|...+-.+|+...|+.-|++...-
T Consensus 173 ~~~alq----lnP~-l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl 247 (966)
T KOG4626|consen 173 FFEALQ----LNPD-LYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL 247 (966)
T ss_pred HHHHHh----cCcc-hhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC
Confidence 666554 2211 122223344444556666666666655443 32 457888888888888888888888888775
Q ss_pred Ch---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHH
Q 003868 382 NL---LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC-DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN 457 (790)
Q Consensus 382 ~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~ 457 (790)
|+ .+|-.|...|...+.+++|+..|.+.... .|+ .+.+..+...|-..|.++.|+..+++.++.. +.-...|+
T Consensus 248 dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~ 324 (966)
T KOG4626|consen 248 DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYN 324 (966)
T ss_pred CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHh
Confidence 54 57888888898999999999999888764 454 5567777777889999999999999998864 33467899
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccC
Q 003868 458 ALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAG 533 (790)
Q Consensus 458 ~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 533 (790)
.|..++-..|++.+|.+.|++... .-..+.+.|...|...|.+++|..+|.+..+ +.|.. ..++.|...|-+.|
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqg 402 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQG 402 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcc
Confidence 999999999999999999998764 3566888999999999999999999999998 78887 47899999999999
Q ss_pred CHHHHHHHHHHcccCCCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHhCCHHHHHHHH
Q 003868 534 LVKEGRRYFETMHGPYGIPPG-EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSA-PIWEALLAGCRIHGNIDLGIQAA 610 (790)
Q Consensus 534 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~ 610 (790)
++++|+..+++.. .+.|+ ...|+.+...|-..|+.+.|.+.+.+. .+.|.. ...+.|...+...|++.+|+..|
T Consensus 403 nl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 403 NLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred cHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 9999999999988 56787 478999999999999999999999876 667754 57899999999999999999999
Q ss_pred HHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHH
Q 003868 611 EQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647 (790)
Q Consensus 611 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 647 (790)
+.++.+.|+.+.+|..|+..+.-..+|.+-.+.++++
T Consensus 480 ~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 480 RTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred HHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHH
Confidence 9999999999999999999988888887755444444
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=3.4e-18 Score=174.37 Aligned_cols=356 Identities=14% Similarity=0.186 Sum_probs=307.5
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--CChhHHH-H
Q 003868 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--RDLVSWN-A 357 (790)
Q Consensus 281 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~-~ 357 (790)
-..+|+.+...+-..|+++.|...+..+++ ..+. .+..|..+..++...|+.+.|...|.+..+ |+..... .
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aie----l~p~-fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~ 189 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIE----LKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSD 189 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHh----cCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcc
Confidence 457899999999999999999999999997 4433 577899999999999999999999988775 5444333 3
Q ss_pred HHHHHHHcCCHHHHHHHHHHhccCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCC
Q 003868 358 ILSAYVSAGLIDEAKSLFEAMRERNL---LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD-YAFAGAITSCAGLGA 433 (790)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~ 433 (790)
+...+...|+.++|...+.+..+-++ ++|..|...+-.+|+...|+..|++... +.|+. ..|-.+...+...+.
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhc
Confidence 44455668999999999988877543 7899999999999999999999999887 45653 467788888888899
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-HhHHHHHHHHHHhcCChHHHHHHHHHH
Q 003868 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--VD-SVSWNAMIAALGQHGNGARAIELYEQM 510 (790)
Q Consensus 434 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 510 (790)
+++|...+..+.... +....++..|...|-..|.+|-|...|++..+ |+ ...|+.|..++-..|+..+|...|.+.
T Consensus 268 ~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred chHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 999998888877653 34566777788889999999999999999875 33 568999999999999999999999999
Q ss_pred HHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 003868 511 LKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG-EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSA 587 (790)
Q Consensus 511 ~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 587 (790)
.. +.|+. ...+.|..++...|.+++|..+|....+ +.|. ....+.|...|-..|++++|..-+++. .++|+.
T Consensus 347 L~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f 421 (966)
T KOG4626|consen 347 LR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF 421 (966)
T ss_pred HH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH
Confidence 98 67877 4888999999999999999999999875 3454 567899999999999999999999886 788875
Q ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 588 -PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 588 -~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
..++.+...|...|+.+.|.+.+.+++..+|.-+.++..|+.+|-.+|+..+|..-++...+
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 58999999999999999999999999999999999999999999999999999999998875
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=4.1e-17 Score=185.52 Aligned_cols=388 Identities=14% Similarity=0.059 Sum_probs=290.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHH
Q 003868 228 WTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY 307 (790)
Q Consensus 228 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 307 (790)
+......|.+.|++++|+..|++. ..+.|+...|..+..++...|+++.|...+..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~a------------------------l~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~ 185 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKA------------------------IECKPDPVYYSNRAACHNALGDWEKVVEDTTA 185 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH------------------------HhcCCchHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 456677889999999999999965 45668888899999999999999999999999
Q ss_pred HHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhccC---
Q 003868 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNAILSAYVSAGLIDEAKSLFEAMRER--- 381 (790)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 381 (790)
+++ ..+ .+...+..+..+|...|++++|..-|..... .+......++..+.......++...++.-...
T Consensus 186 al~----l~p-~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~ 260 (615)
T TIGR00990 186 ALE----LDP-DYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPS 260 (615)
T ss_pred HHH----cCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 987 443 3577888899999999999999887755432 11111111111111111112222222111110
Q ss_pred --------------------------Ch---hHHHHHHHHH---HhcCChHHHHHHHHHHHHcC-CCC-CHHHHHHHHHH
Q 003868 382 --------------------------NL---LSWTVMISGL---AQNGYGEEGLKLFSQMRLEG-FKP-CDYAFAGAITS 427 (790)
Q Consensus 382 --------------------------~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~~ 427 (790)
+. ..+..+...+ ...+++++|++.|++....+ ..| +...+..+...
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~ 340 (615)
T TIGR00990 261 VTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTF 340 (615)
T ss_pred HHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 00 0111111111 22467899999999998765 234 34567777777
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHH
Q 003868 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAI 504 (790)
Q Consensus 428 ~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 504 (790)
+...|++++|...++.+++.. +.....+..+...|...|++++|...|+...+ .+...|..+...+...|++++|+
T Consensus 341 ~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 419 (615)
T TIGR00990 341 KCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAG 419 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 889999999999999998863 33466788899999999999999999997754 46788999999999999999999
Q ss_pred HHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 003868 505 ELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-P 582 (790)
Q Consensus 505 ~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 582 (790)
..|++..+ +.|+. ..+..+..++...|++++|...|+...+ ..+.+...|..+..+|...|++++|.+.|++. .
T Consensus 420 ~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 420 KDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 99999998 56765 5677778888999999999999999886 34456788999999999999999999999885 3
Q ss_pred CCCCH-H-------HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 583 FKPSA-P-------IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 583 ~~p~~-~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+.|+. . .++..+..+...|++++|+..++++++++|++..++..++.+|...|++++|.+++++..+
T Consensus 496 l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 496 LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33321 1 1222222334469999999999999999999988999999999999999999999999865
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=4.6e-18 Score=183.54 Aligned_cols=294 Identities=14% Similarity=0.121 Sum_probs=192.6
Q ss_pred HHHHCCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHhccCC-------hhHHHHHHHHHHhcCCh
Q 003868 330 LYWKCGKVNEARDIFNQMPE--R-DLVSWNAILSAYVSAGLIDEAKSLFEAMRERN-------LLSWTVMISGLAQNGYG 399 (790)
Q Consensus 330 ~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~ 399 (790)
.+...|++++|...|.++.+ | +..++..+...+.+.|++++|..+++.+.... ...+..++..|.+.|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 44556666666666666653 2 23355556666666666666655555554321 12344555555555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 003868 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479 (790)
Q Consensus 400 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 479 (790)
++|+.+|+++.+.. +++..++..+...+.+.|++++|.+.+..+.+.+..+....
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------ 178 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------ 178 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH------------------------
Confidence 55555555554431 22333444444444444444444444444443321110000
Q ss_pred CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC--hh
Q 003868 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG--ED 556 (790)
Q Consensus 480 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 556 (790)
....|..+...+.+.|++++|+..|+++.+. .|+. ..+..+...+.+.|++++|.++|+++.+. .|+ ..
T Consensus 179 ---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~ 250 (389)
T PRK11788 179 ---IAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSE 250 (389)
T ss_pred ---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHH
Confidence 0123455666777888888888888888773 4543 46667777888888888888888888753 233 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHh--
Q 003868 557 HYARFIDLLCRAGKFSEAKDVIDSL-PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN-- 633 (790)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 633 (790)
.+..++.+|.+.|++++|.+.++++ ...|+...+..+...+...|++++|..+++++++..|++. .+..+...+..
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~ 329 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhcc
Confidence 6778888899999999999988886 4467777778888999999999999999999999998875 55555655553
Q ss_pred -cCChhHHHHHHHHHHhCCCccCCc
Q 003868 634 -LGRWDDAARVRKLMRDRGVKKEPG 657 (790)
Q Consensus 634 -~g~~~~a~~~~~~m~~~g~~~~~~ 657 (790)
.|+.+++..++++|.+++++++|.
T Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 330 EEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhCCCC
Confidence 569999999999999999999987
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.80 E-value=4.4e-17 Score=175.87 Aligned_cols=290 Identities=17% Similarity=0.137 Sum_probs=219.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCC-C------hhHHHH
Q 003868 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER-D------LVSWNA 357 (790)
Q Consensus 285 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~------~~~~~~ 357 (790)
.-.....+...|+++.|...+..+++ .++ .+..++..+...|...|++++|..+++.+... + ...+..
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~----~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 112 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLK----VDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQE 112 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh----cCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 33334456678999999999999997 443 35678999999999999999999999988752 1 246788
Q ss_pred HHHHHHHcCCHHHHHHHHHHhcc---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCh
Q 003868 358 ILSAYVSAGLIDEAKSLFEAMRE---RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434 (790)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 434 (790)
+...|.+.|++++|..+|+++.+ .+..+++.++..+.+.|++++|++.++.+.+.+..+.....
T Consensus 113 La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------- 179 (389)
T PRK11788 113 LGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI------------- 179 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH-------------
Confidence 89999999999999999999987 35678999999999999999999999999876533322100
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003868 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQML 511 (790)
Q Consensus 435 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 511 (790)
...+..+...|.+.|++++|.+.|+++.+ .+...+..+...+.+.|++++|+++|+++.
T Consensus 180 ------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 241 (389)
T PRK11788 180 ------------------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVE 241 (389)
T ss_pred ------------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 01123344455555555555555555432 234466677788888888888888888888
Q ss_pred HcCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 003868 512 KEGILPD--RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSAP 588 (790)
Q Consensus 512 ~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~ 588 (790)
+. .|+ ..++..+..+|...|++++|...++.+.+. .|+...+..++..+.+.|++++|.++++++ ...|+..
T Consensus 242 ~~--~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~ 316 (389)
T PRK11788 242 EQ--DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR 316 (389)
T ss_pred HH--ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH
Confidence 74 344 346777888888888999998888888753 566666788888899999999999988865 5568888
Q ss_pred HHHHHHHHHHH---hCCHHHHHHHHHHHHh
Q 003868 589 IWEALLAGCRI---HGNIDLGIQAAEQLFQ 615 (790)
Q Consensus 589 ~~~~ll~~~~~---~g~~~~a~~~~~~~~~ 615 (790)
.++.++..+.. +|+.+++...++++++
T Consensus 317 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 317 GFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 88888877664 5588888888887775
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=5.3e-16 Score=175.68 Aligned_cols=330 Identities=13% Similarity=0.047 Sum_probs=266.6
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--C-ChhHHHH
Q 003868 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--R-DLVSWNA 357 (790)
Q Consensus 281 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~ 357 (790)
+..-...++..+.+.|+++.|..++...+. ..+. +......++......|+++.|...|+++.. | +...|..
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~----~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~ 115 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVL----TAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLL 115 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHH----hCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 344566778888999999999999999987 4444 345556666777789999999999999875 3 5567888
Q ss_pred HHHHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCh
Q 003868 358 ILSAYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434 (790)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 434 (790)
+...+.+.|++++|...|++..+. +...|..++..+.+.|++++|...++.+......+.. .+.. +..+...|++
T Consensus 116 la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~-~~~l~~~g~~ 193 (656)
T PRK15174 116 VASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIAT-CLSFLNKSRL 193 (656)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHH-HHHHHHcCCH
Confidence 899999999999999999998763 4568899999999999999999999988765433222 2322 3347889999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHH----HHHHH
Q 003868 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGAR----AIELY 507 (790)
Q Consensus 435 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~~~ 507 (790)
++|...+..+.+....++......+...+.+.|+.++|...|++... .+...+..+...+...|++++ |+..|
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 99999999988765334445556667889999999999999998764 367788889999999999986 89999
Q ss_pred HHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 003868 508 EQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP 585 (790)
Q Consensus 508 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 585 (790)
++..+ ..|+. ..+..+...+...|++++|...++...+. .+.+...+..+...|.+.|++++|.+.++++ ...|
T Consensus 274 ~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 274 RHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred HHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 99998 56765 47888889999999999999999998863 3344667788899999999999999999887 3556
Q ss_pred CHHHH-HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 003868 586 SAPIW-EALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 586 ~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
+...+ ..+..++...|+.++|...++++++..|++.
T Consensus 350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 65444 3456678899999999999999999999874
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.77 E-value=3.4e-15 Score=172.91 Aligned_cols=389 Identities=10% Similarity=-0.001 Sum_probs=284.8
Q ss_pred eHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHH
Q 003868 227 SWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306 (790)
Q Consensus 227 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 306 (790)
--.-.+......|+.++|++++.+. .. .-+.+...+..+..++...|++++|...+.
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~----------------------~~-~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~ 73 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRY----------------------RV-HMQLPARGYAAVAVAYRNLKQWQNSLTLWQ 73 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH----------------------Hh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445566777889999999888875 11 112344467888888889999999999999
Q ss_pred HHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHhccC--
Q 003868 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--R-DLVSWNAILSAYVSAGLIDEAKSLFEAMRER-- 381 (790)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 381 (790)
..+. ..+ .+......+..++...|+.++|...+++..+ | +.. |..+...+...|+.++|+..++++.+.
T Consensus 74 ~al~----~~P-~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P 147 (765)
T PRK10049 74 KALS----LEP-QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP 147 (765)
T ss_pred HHHH----hCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 9886 432 2466677888889999999999999988764 3 444 888888889999999999999988763
Q ss_pred -ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHH-----ccCCh---HHHHHHHHHHHH
Q 003868 382 -NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY------AFAGAITSCA-----GLGAL---ENGRQLHAQLVH 446 (790)
Q Consensus 382 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~~~~-----~~g~~---~~a~~i~~~~~~ 446 (790)
+...+..+...+...|..++|+..++.... .|+.. ....++.... ..+.+ ++|.+.++.+.+
T Consensus 148 ~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~ 224 (765)
T PRK10049 148 QTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEA 224 (765)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHh
Confidence 345666778888888888999988876653 33320 1111222221 11223 667778888776
Q ss_pred h-CCCCchh-HH-HH---HHHHHHhcCCHHHHHHHHhcCCCCC---Hh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003868 447 S-GYDSSLS-AG-NA---LITMYARCGVVEAANCVFNTMPNVD---SV-SWNAMIAALGQHGNGARAIELYEQMLKEGIL 516 (790)
Q Consensus 447 ~-g~~~~~~-~~-~~---li~~y~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 516 (790)
. ...|+.. .+ .+ .+.++...|+.++|.+.|+.+.+.+ +. .-..+...|...|++++|+..|+++.+. .
T Consensus 225 ~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~ 302 (765)
T PRK10049 225 LWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--P 302 (765)
T ss_pred hcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--C
Confidence 4 2222221 11 11 1234456799999999999987532 11 1222567899999999999999998763 3
Q ss_pred CCh-----hhHHHHHHHHHccCCHHHHHHHHHHcccCCC----------CCCC---hhHHHHHHHHHHhcCChHHHHHHH
Q 003868 517 PDR-----ITFLTVLSACNHAGLVKEGRRYFETMHGPYG----------IPPG---EDHYARFIDLLCRAGKFSEAKDVI 578 (790)
Q Consensus 517 p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~ 578 (790)
|.. .....+..++...|++++|.++++.+.+... -.|+ ...+..+...+...|++++|++.+
T Consensus 303 p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l 382 (765)
T PRK10049 303 ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRA 382 (765)
T ss_pred CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 332 3456667788999999999999998876310 1122 234567788899999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 579 DSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 579 ~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+++ ...| +...+..+...+...|+.++|++.++++++++|++...+..++..+...|+|++|.++++.+.+
T Consensus 383 ~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 383 RELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 986 3334 5678999999999999999999999999999999999999999999999999999999999976
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.76 E-value=7.4e-15 Score=166.40 Aligned_cols=343 Identities=15% Similarity=0.031 Sum_probs=270.3
Q ss_pred CCHHHHHHHHccCCCC------CeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccC-
Q 003868 208 SLMGAARRVFDEMPER------DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQL- 280 (790)
Q Consensus 208 g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p- 280 (790)
.+++.-.-+|..-++. +..-...++..+.+.|++++|..+++... ...|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l------------------------~~~p~ 74 (656)
T PRK15174 19 EDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRV------------------------LTAKN 74 (656)
T ss_pred hchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHH------------------------HhCCC
Confidence 5555555666655542 34455667888999999999999999752 2223
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--C-ChhHHHH
Q 003868 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--R-DLVSWNA 357 (790)
Q Consensus 281 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~ 357 (790)
+...+..+..++...|+++.|...++.++. ..+. +...+..+...+.+.|++++|...|++..+ | +...|..
T Consensus 75 ~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~----~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~ 149 (656)
T PRK15174 75 GRDLLRRWVISPLASSQPDAVLQVVNKLLA----VNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFAL 149 (656)
T ss_pred chhHHHHHhhhHhhcCCHHHHHHHHHHHHH----hCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 334455555667789999999999999987 4433 567888899999999999999999999875 3 5668889
Q ss_pred HHHHHHHcCCHHHHHHHHHHhcc--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCh
Q 003868 358 ILSAYVSAGLIDEAKSLFEAMRE--R-NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434 (790)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 434 (790)
+...+.+.|++++|...++.+.. + +...+..+ ..+.+.|++++|...++.+......++......+..++.+.|++
T Consensus 150 la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~ 228 (656)
T PRK15174 150 HLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKY 228 (656)
T ss_pred HHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCH
Confidence 99999999999999999987754 3 33344333 34788999999999999988764444555556667788899999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH----HHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHH
Q 003868 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA----ANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELY 507 (790)
Q Consensus 435 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~----A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 507 (790)
++|...+..+.+.. +.+...+..+...|.+.|+.++ |...|++..+ .+...+..+...+.+.|++++|+..+
T Consensus 229 ~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l 307 (656)
T PRK15174 229 QEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLL 307 (656)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999875 5567788889999999999986 7888988764 36778999999999999999999999
Q ss_pred HHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 003868 508 EQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE-DHYARFIDLLCRAGKFSEAKDVIDSL-PFK 584 (790)
Q Consensus 508 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 584 (790)
++..+ ..|+. ..+..+..++...|++++|...|+.+.+. .|+. ..+..+..++...|+.++|.+.|++. ...
T Consensus 308 ~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 308 QQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99998 56765 45667788899999999999999998853 4543 33445677899999999999999886 334
Q ss_pred CC
Q 003868 585 PS 586 (790)
Q Consensus 585 p~ 586 (790)
|+
T Consensus 383 P~ 384 (656)
T PRK15174 383 AS 384 (656)
T ss_pred hh
Confidence 43
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.75 E-value=1.6e-14 Score=167.41 Aligned_cols=383 Identities=9% Similarity=0.031 Sum_probs=291.6
Q ss_pred CCHHHHHHHHccCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCC-hh
Q 003868 208 SLMGAARRVFDEMPE---RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLD-EF 283 (790)
Q Consensus 208 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~-~~ 283 (790)
|+.++|+.++..... .+...+..+...+...|++++|..+|++. ....|+ ..
T Consensus 29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~a------------------------l~~~P~~~~ 84 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKA------------------------LSLEPQNDD 84 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------------HHhCCCCHH
Confidence 999999999988764 24445899999999999999999999975 223344 45
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--C-ChhHHHHHHH
Q 003868 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--R-DLVSWNAILS 360 (790)
Q Consensus 284 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~ 360 (790)
.+..+...+...|+.++|...++.+++ ..+ .+.. +..+..++...|+.++|...++++.+ | +...+..+..
T Consensus 85 a~~~la~~l~~~g~~~eA~~~l~~~l~----~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~ 158 (765)
T PRK10049 85 YQRGLILTLADAGQYDEALVKAKQLVS----GAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQ 158 (765)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH----hCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 566777788899999999999999987 433 3455 88899999999999999999999875 3 4556777888
Q ss_pred HHHHcCCHHHHHHHHHHhccCChh--------HHHHHHHHHH-----hcCCh---HHHHHHHHHHHHc-CCCCCHH-HHH
Q 003868 361 AYVSAGLIDEAKSLFEAMRERNLL--------SWTVMISGLA-----QNGYG---EEGLKLFSQMRLE-GFKPCDY-AFA 422 (790)
Q Consensus 361 ~~~~~g~~~~A~~~~~~m~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~ 422 (790)
.+...|..++|++.++.... ++. ....++.... ..+++ ++|+..++.+... ...|+.. .+.
T Consensus 159 ~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~ 237 (765)
T PRK10049 159 ALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ 237 (765)
T ss_pred HHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH
Confidence 88999999999999998776 211 1222222222 22234 7789999988864 2233321 111
Q ss_pred ----HHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-------HhHHHHHH
Q 003868 423 ----GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD-------SVSWNAMI 491 (790)
Q Consensus 423 ----~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li 491 (790)
..+.++...|++++|+..++.+.+.+.+........+...|...|++++|+..|+++.+.+ ...+..+.
T Consensus 238 ~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 238 RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 1134456779999999999999987632122223336789999999999999999875422 23456677
Q ss_pred HHHHhcCChHHHHHHHHHHHHcC-----------CCCCh---hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhH
Q 003868 492 AALGQHGNGARAIELYEQMLKEG-----------ILPDR---ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557 (790)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 557 (790)
.++.+.|++++|+.+++++.+.. -.|+. ..+..+...+...|++++|+++++++.. ..+.+...
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l 395 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGL 395 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHH
Confidence 78899999999999999998741 11232 2345666788899999999999999986 45666788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcc
Q 003868 558 YARFIDLLCRAGKFSEAKDVIDSL-PFKPS-APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623 (790)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 623 (790)
+..+..++...|++++|++.+++. ...|+ ...+..+...+...|++++|+.+++++++..|+++.+
T Consensus 396 ~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 396 RIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999999986 45665 5677777778899999999999999999999999643
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=3.8e-14 Score=153.12 Aligned_cols=534 Identities=13% Similarity=0.103 Sum_probs=372.3
Q ss_pred hhHHHHHhhhCCC--CChHHHHHHHHHH--hcCCChHHHHHHHhhCCCC----CCCcchHHHHHHHHHhCCCchHHHHHH
Q 003868 66 LVYARTLFDEIPQ--PDIVARTTLIAAY--SASDNVKLAREMFNKTPLK----MRDTVFYNAMITAYSHNSNGHAAIELF 137 (790)
Q Consensus 66 ~~~A~~~~~~~~~--~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~----~~~~~~~n~li~~~~~~g~~~~A~~~~ 137 (790)
++.|.+.|....+ |+-+. .-|..++ ...|++..|..+|...... ++|+.. .+-..+.+.|+.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil-~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNIL-ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchH-HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 5788888877765 33222 1233333 3567899999999873322 445432 2224567889999999999
Q ss_pred HHhhhCCCCCChhhHHHHHHHHhc---chh--hhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHH
Q 003868 138 RDMRRDDVKPDNFTFTSVLSALAL---IVE--EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212 (790)
Q Consensus 138 ~~m~~~g~~p~~~t~~~ll~~~~~---~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~ 212 (790)
.+..+- .|+.+.-...|.-+.. ..+ ..+. ++....-+. -..++.+.+.|-+.|.-. |+++.
T Consensus 223 ~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~--~ll~~ay~~-n~~nP~~l~~LAn~fyfK---------~dy~~ 288 (1018)
T KOG2002|consen 223 ERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGV--QLLQRAYKE-NNENPVALNHLANHFYFK---------KDYER 288 (1018)
T ss_pred HHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHH--HHHHHHHhh-cCCCcHHHHHHHHHHhhc---------ccHHH
Confidence 998864 3422221111111111 001 1121 222222221 246778888888887777 99999
Q ss_pred HHHHHccCCCCC------eeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhH-
Q 003868 213 ARRVFDEMPERD------ELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTY- 285 (790)
Q Consensus 213 A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~- 285 (790)
++.+...+...+ ..+|--+.++|-..|++++|...|.+- .+..||.+++
T Consensus 289 v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s------------------------~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 289 VWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES------------------------LKADNDNFVLP 344 (1018)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH------------------------HccCCCCcccc
Confidence 998887665432 345788999999999999999999854 5556666554
Q ss_pred -HHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCC----CHHHHHHHHhhCCCC---ChhHHHH
Q 003868 286 -TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG----KVNEARDIFNQMPER---DLVSWNA 357 (790)
Q Consensus 286 -~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~f~~m~~~---~~~~~~~ 357 (790)
.-+.+.+...|+++.+...|+.+.+ .. +.+..+...|...|...+ ..+.|..+.....++ |...|-.
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k----~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~ 419 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLK----QL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLE 419 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHH----hC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 4567788999999999999999987 33 346677777888887775 567788888777664 5567776
Q ss_pred HHHHHHHcCCHHHHHHHHHHhc--------cCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCH-----HHH
Q 003868 358 ILSAYVSAGLIDEAKSLFEAMR--------ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE---GFKPCD-----YAF 421 (790)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~m~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~-----~t~ 421 (790)
+...|-+..-+. ++.+|.... ...+...|.+...+...|++++|...|.+.... ...+|. .|.
T Consensus 420 laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~ 498 (1018)
T KOG2002|consen 420 LAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTL 498 (1018)
T ss_pred HHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHH
Confidence 666665544433 355554443 245678999999999999999999999988764 223333 222
Q ss_pred H-HHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhc
Q 003868 422 A-GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQH 497 (790)
Q Consensus 422 ~-~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 497 (790)
. .+....-..++.+.|.+.+..+.+.. +.-+..|--|..+.-..+...+|...++.... .++..|+.+...+...
T Consensus 499 ~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k 577 (1018)
T KOG2002|consen 499 KYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKK 577 (1018)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhh
Confidence 2 23344456679999999999998863 22222333333233333567788888887654 5777888888888888
Q ss_pred CChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHc------------cCCHHHHHHHHHHcccCCCCCCChhHHHHHHHH
Q 003868 498 GNGARAIELYEQMLKEG-ILPDRITFLTVLSACNH------------AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564 (790)
Q Consensus 498 g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 564 (790)
..+..|.+-|+...+.- ..+|..+..+|.+.|.. .+..++|+++|.++.+ ..+-|...-+-+.-.
T Consensus 578 ~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiV 655 (1018)
T KOG2002|consen 578 SEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIV 655 (1018)
T ss_pred hhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhh
Confidence 88888988777766532 33677777777776642 3457889999998886 456677778888899
Q ss_pred HHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCCCcchHhhHHHHHhcCChhHH
Q 003868 565 LCRAGKFSEAKDVIDSLP--FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL--MPHHAGTYVLLSNMYANLGRWDDA 640 (790)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a 640 (790)
++..|++.+|.++|.+.. ......+|..+...|...|++..|+++|+..+.. ..+++.....|+.++.+.|+|.+|
T Consensus 656 LA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 656 LAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred hhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999998872 2235568999999999999999999999998876 344677888999999999999999
Q ss_pred HHHHHHHHh
Q 003868 641 ARVRKLMRD 649 (790)
Q Consensus 641 ~~~~~~m~~ 649 (790)
.+.......
T Consensus 736 k~~ll~a~~ 744 (1018)
T KOG2002|consen 736 KEALLKARH 744 (1018)
T ss_pred HHHHHHHHH
Confidence 998887765
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.73 E-value=2.8e-14 Score=162.44 Aligned_cols=418 Identities=14% Similarity=-0.014 Sum_probs=236.3
Q ss_pred HHHHHHHHHhcCChhHHHHHhhhCCC--CChHHHHHHHHHHhcCCChHHHHHHHhhCCCC-CCCcchHHHHHHHHHhCCC
Q 003868 53 INRLIDIYCKSLKLVYARTLFDEIPQ--PDIVARTTLIAAYSASDNVKLAREMFNKTPLK-MRDTVFYNAMITAYSHNSN 129 (790)
Q Consensus 53 ~~~ll~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~n~li~~~~~~g~ 129 (790)
+..+-+.+.+.|+++.|...|++... |+...|..+-.+|.+.|++++|.+.++..... +.+...|..+-.+|...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 34556677888999999999998765 78888888889999999999999998876654 3456678888899999999
Q ss_pred chHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchhhhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCC
Q 003868 130 GHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209 (790)
Q Consensus 130 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~ 209 (790)
+++|+..|......+-..+. ....++...... .+
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~~---~a------------------------------------------ 243 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNE-QSAQAVERLLKK---FA------------------------------------------ 243 (615)
T ss_pred HHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHH---HH------------------------------------------
Confidence 99999888766543211111 111111111000 00
Q ss_pred HHHHHHHHccCCCCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhH-HHH
Q 003868 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTY-TSV 288 (790)
Q Consensus 210 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~-~~l 288 (790)
...+...++.-+ .+..++..+.. |........+..-+..-.+.+ ... ...... ...
T Consensus 244 ~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------~~~---~~~~~~l~~~ 300 (615)
T TIGR00990 244 ESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELD------------------EET---GNGQLQLGLK 300 (615)
T ss_pred HHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcccccc------------------ccc---ccchHHHHHH
Confidence 001111111100 01111111111 111111111111010000000 000 000000 000
Q ss_pred HHHHHccCChHHHHHHHHHHHHhcCCCC--CCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHH
Q 003868 289 ISACANSGLFRLGKQVHAYLLRTEAKPT--PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--R-DLVSWNAILSAYV 363 (790)
Q Consensus 289 l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~ 363 (790)
..-....+++++|.+.++..+. .+ .+.....++.+...+...|++++|...|+...+ | +..+|..+...+.
T Consensus 301 ~~e~~~~~~y~~A~~~~~~al~----~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~ 376 (615)
T TIGR00990 301 SPESKADESYEEAARAFEKALD----LGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNL 376 (615)
T ss_pred HHHhhhhhhHHHHHHHHHHHHh----cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 0000222344455555555544 21 112334455555566666666666666665543 2 2335566666666
Q ss_pred HcCCHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 003868 364 SAGLIDEAKSLFEAMRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440 (790)
Q Consensus 364 ~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i 440 (790)
..|++++|...|++..+. +...|..+...+...|++++|+..|++..... +.+...+..+..++.+.|++++|...
T Consensus 377 ~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~ 455 (615)
T TIGR00990 377 ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMAT 455 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 667777777666665542 34566667777777777777777777776642 22345555666667777777777777
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC--H------hHHHHHHHHHHhcCChHHHHHHHHHH
Q 003868 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--VD--S------VSWNAMIAALGQHGNGARAIELYEQM 510 (790)
Q Consensus 441 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~--~------~~~~~li~~~~~~g~~~~A~~~~~~m 510 (790)
+..+++. .+.+..+++.+...|...|++++|.+.|++... |+ . ..++..+..+...|++++|++++++.
T Consensus 456 ~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 456 FRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred HHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 7777664 244566777777777778888888777776543 11 1 11222233344468888999988888
Q ss_pred HHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHccc
Q 003868 511 LKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHG 547 (790)
Q Consensus 511 ~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 547 (790)
.+ +.|+. ..+..+...+...|++++|..+|+...+
T Consensus 535 l~--l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 535 LI--IDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred Hh--cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77 45655 4677788888889999999988888764
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.70 E-value=6.9e-13 Score=150.58 Aligned_cols=410 Identities=9% Similarity=0.002 Sum_probs=298.6
Q ss_pred CCHHHHHHHHccCCCCCee---eHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhh
Q 003868 208 SLMGAARRVFDEMPERDEL---SWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFT 284 (790)
Q Consensus 208 g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t 284 (790)
|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++. . .|+...
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka----------------------~----~p~n~~ 101 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERY----------------------Q----SSMNIS 101 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHh----------------------c----cCCCCC
Confidence 9999999999988754333 2348889999999999999999976 2 443333
Q ss_pred HH-H--HHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCC--ChhHHHHHH
Q 003868 285 YT-S--VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER--DLVSWNAIL 359 (790)
Q Consensus 285 ~~-~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~li 359 (790)
+. . +...+...|+++.|.++++.+++ ..+. +..++..++..|...++.++|++.++++... +...+-.++
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~----~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~la 176 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLK----KDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLS 176 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHH
Confidence 32 2 34567788999999999999997 5544 4677788899999999999999999999864 434443333
Q ss_pred HHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH------HHHHHHH--
Q 003868 360 SAYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF------AGAITSC-- 428 (790)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~------~~ll~~~-- 428 (790)
..+...++..+|++.++++.+. +...+..+...+.+.|-...|+++..+-... +.+...-. ...++--
T Consensus 177 yL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~ 255 (822)
T PRK14574 177 YLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVL 255 (822)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhccc
Confidence 3344456666699999999874 4567788889999999999998777653321 11211111 1111100
Q ss_pred ---HccCCh---HHHHHHHHHHHHh-C-CCCchhH-HHH---HHHHHHhcCCHHHHHHHHhcCCCC----CHhHHHHHHH
Q 003868 429 ---AGLGAL---ENGRQLHAQLVHS-G-YDSSLSA-GNA---LITMYARCGVVEAANCVFNTMPNV----DSVSWNAMIA 492 (790)
Q Consensus 429 ---~~~g~~---~~a~~i~~~~~~~-g-~~~~~~~-~~~---li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~ 492 (790)
....++ +.|..-++.+... + .++.... ..+ .+-++.+.|+..++.+.|+.+... ...+-.++.+
T Consensus 256 ~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad 335 (822)
T PRK14574 256 PTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS 335 (822)
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 011222 3344444444432 2 2222222 223 344667889999999999999842 3345567889
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC-----CCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCC----------CCCCh--
Q 003868 493 ALGQHGNGARAIELYEQMLKEGI-----LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG----------IPPGE-- 555 (790)
Q Consensus 493 ~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~~-- 555 (790)
+|...+++++|+.+|+++....- .++......|..++..++++++|..+++.+.+... -.|+.
T Consensus 336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 99999999999999999976431 12223357889999999999999999999986211 01332
Q ss_pred -hHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHH
Q 003868 556 -DHYARFIDLLCRAGKFSEAKDVIDSL-PF-KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632 (790)
Q Consensus 556 -~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 632 (790)
..+..++..+...|++.+|++.++++ .. +-|..++..+...+...|...+|++.++.+..++|++..+...++..+.
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al 495 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAM 495 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHH
Confidence 34455777889999999999999998 23 3478899999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHh
Q 003868 633 NLGRWDDAARVRKLMRD 649 (790)
Q Consensus 633 ~~g~~~~a~~~~~~m~~ 649 (790)
..|+|++|.++.+...+
T Consensus 496 ~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 496 ALQEWHQMELLTDDVIS 512 (822)
T ss_pred hhhhHHHHHHHHHHHHh
Confidence 99999999999988765
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.70 E-value=5.7e-13 Score=144.24 Aligned_cols=150 Identities=16% Similarity=0.203 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 003868 500 GARAIELYEQMLKEGILP-DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVI 578 (790)
Q Consensus 500 ~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 578 (790)
.++|+++|.+.++. .| |...-+.+.-.++..|++.+|..+|.+..+. ......+|-.+.+.|..+|++-.|+++|
T Consensus 628 ~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 44455555544442 22 2234444444445555555555555555442 1223334444555555555555555555
Q ss_pred HhC----CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHH-------------------HHHhcC
Q 003868 579 DSL----PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN-------------------MYANLG 635 (790)
Q Consensus 579 ~~~----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~-------------------~~~~~g 635 (790)
+.. .-+.+..+...|..++...|.+.+|.+.+..+..+.|.|+..-..++- +....+
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~ 783 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVK 783 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 432 112244444555555555555555555555555555554433333322 223345
Q ss_pred ChhHHHHHHHHHHhCCCc
Q 003868 636 RWDDAARVRKLMRDRGVK 653 (790)
Q Consensus 636 ~~~~a~~~~~~m~~~g~~ 653 (790)
..+.|.++|.+|...+-+
T Consensus 784 ~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 784 ELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 667788888888765544
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.4e-12 Score=128.35 Aligned_cols=441 Identities=13% Similarity=0.068 Sum_probs=269.5
Q ss_pred chHHHHHHHHHHHcCCCCCcchHHHHHH--HHHhcCChhHH-HHHhhhCCC---CChHHHHHHHHHHhcCCChHHHHHHH
Q 003868 31 SSLARSVHAHMISSGFKPREHIINRLID--IYCKSLKLVYA-RTLFDEIPQ---PDIVARTTLIAAYSASDNVKLAREMF 104 (790)
Q Consensus 31 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~--~~~~~~~~~~A-~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 104 (790)
+..+.-+++.|.+.|++.++..--.|+. .|.+..++.-| ++-|-.|.. .+..+| +.|++.+ -+|
T Consensus 131 vKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--------K~G~vAd--L~~ 200 (625)
T KOG4422|consen 131 VKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--------KSGAVAD--LLF 200 (625)
T ss_pred cchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--------ccccHHH--HHH
Confidence 6678889999999999988877666654 34444444333 344445543 444455 4566555 667
Q ss_pred hhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchhhhhhhhhHHHHHHHhCCCCc
Q 003868 105 NKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLF 184 (790)
Q Consensus 105 ~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 184 (790)
+..| .+..+|..||.|+|+-...+.|.+++++-++...+.+..+|+.+|.+-+-. .++ .+...|+.....||
T Consensus 201 E~~P---KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~---~~K--~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 201 ETLP---KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS---VGK--KLVAEMISQKMTPN 272 (625)
T ss_pred hhcC---CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh---ccH--HHHHHHHHhhcCCc
Confidence 7776 477899999999999999999999999999998999999999999875432 334 77778888888888
Q ss_pred hhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCCCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHH
Q 003868 185 TSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264 (790)
Q Consensus 185 ~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~ 264 (790)
.+++|+++.+.++. |.++.|++. |.+++.+|
T Consensus 273 l~TfNalL~c~akf---------g~F~~ar~a---------------------------alqil~Em------------- 303 (625)
T KOG4422|consen 273 LFTFNALLSCAAKF---------GKFEDARKA---------------------------ALQILGEM------------- 303 (625)
T ss_pred hHhHHHHHHHHHHh---------cchHHHHHH---------------------------HHHHHHHH-------------
Confidence 88888888888888 777777654 45666666
Q ss_pred hhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHH-HHHHHHHHHHhc----CCCCCCCChhHHHHHHHHHHHCCCHHH
Q 003868 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRL-GKQVHAYLLRTE----AKPTPEFSLPVNNALVTLYWKCGKVNE 339 (790)
Q Consensus 265 ~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~ 339 (790)
++.|+.|...+|..+|..+.+.++..+ +..+...+...- ..+-.+.|...+...++.+....+.+.
T Consensus 304 ---------KeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~L 374 (625)
T KOG4422|consen 304 ---------KEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLEL 374 (625)
T ss_pred ---------HHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHH
Confidence 778888888888888887777776644 333333333211 111122234444444555555555555
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003868 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY 419 (790)
Q Consensus 340 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 419 (790)
|.++-.-....+.. ...|.. + ....-|..+....++....+.-+..|+.|.-.-+-|+..
T Consensus 375 A~~v~~ll~tg~N~---------~~ig~~------~-----~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~ 434 (625)
T KOG4422|consen 375 AYQVHGLLKTGDNW---------KFIGPD------Q-----HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQ 434 (625)
T ss_pred HHHHHHHHHcCCch---------hhcChH------H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCch
Confidence 55443332211000 000000 0 011234445556666666888888888888877888888
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhc-C
Q 003868 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH-G 498 (790)
Q Consensus 420 t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g 498 (790)
+...++.+....+.++-...++..++..|.........-+...+++.. ..|+...-..+-..+++. -
T Consensus 435 ~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 435 TMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred hHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHH
Confidence 888899988888888888888888888775554444333333333322 012111111111111110 0
Q ss_pred ChHH-HHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHH---HHHHHHHhcCChHHH
Q 003868 499 NGAR-AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA---RFIDLLCRAGKFSEA 574 (790)
Q Consensus 499 ~~~~-A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~---~li~~~~~~g~~~~A 574 (790)
++.+ ....-.+|.+.... ....+.++..+.+.|..++|.++|..+.+...-.|.....+ -+++.-.+......|
T Consensus 503 d~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 1111 12222344443333 33445555556677788888877777744433334333444 444555566677777
Q ss_pred HHHHHhC
Q 003868 575 KDVIDSL 581 (790)
Q Consensus 575 ~~~~~~~ 581 (790)
...++-|
T Consensus 581 ~~~lQ~a 587 (625)
T KOG4422|consen 581 IEVLQLA 587 (625)
T ss_pred HHHHHHH
Confidence 7777665
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.67 E-value=1.6e-12 Score=147.63 Aligned_cols=222 Identities=9% Similarity=0.062 Sum_probs=167.3
Q ss_pred hHHHHHHHHHHHHc-CCCCCH-H----HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 003868 399 GEEGLKLFSQMRLE-GFKPCD-Y----AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472 (790)
Q Consensus 399 ~~~A~~~~~~m~~~-g~~p~~-~----t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 472 (790)
.+.|+.-++.+... +-.|.. . ...--+-++...++..++++.++.+...+.+....+-.++.++|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 35556666665542 222322 1 12234556777888888888888888888776777888888899988999999
Q ss_pred HHHHhcCCCC---------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CCCh--h-hHHHHHHHH
Q 003868 473 NCVFNTMPNV---------DSVSWNAMIAALGQHGNGARAIELYEQMLKEGI-----------LPDR--I-TFLTVLSAC 529 (790)
Q Consensus 473 ~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~~--~-t~~~ll~a~ 529 (790)
..+|+.+... +......|.-+|...+++++|..+++++.+.-- .||. . .+..++..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 8888876431 233346778888899999999999999987311 1222 2 344456678
Q ss_pred HccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHHH
Q 003868 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS-APIWEALLAGCRIHGNIDLGI 607 (790)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 607 (790)
...|++.+|++.++.+.. .-+-|......+.+.+...|++.+|++.++.. .+.|+ ..+......+....+++++|.
T Consensus 427 ~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQME 504 (822)
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHH
Confidence 899999999999999976 45668899999999999999999999999776 34564 456667788888899999999
Q ss_pred HHHHHHHhcCCCCCc
Q 003868 608 QAAEQLFQLMPHHAG 622 (790)
Q Consensus 608 ~~~~~~~~~~p~~~~ 622 (790)
.+.+++.+..|+++.
T Consensus 505 ~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 505 LLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHhhCCCchh
Confidence 999999999999974
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=3.7e-13 Score=132.93 Aligned_cols=202 Identities=13% Similarity=0.180 Sum_probs=157.7
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHH
Q 003868 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIEL 506 (790)
Q Consensus 430 ~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 506 (790)
..|++++|.+.++++....-......|| +.-.+-+.|++++|+..|-++.. .++...-.+.+.|-...++..|+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 3456666666666665543222222333 33346667888888888776543 4666666777888888899999999
Q ss_pred HHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 003868 507 YEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFK 584 (790)
Q Consensus 507 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 584 (790)
+.+... +.|+. .....|...|-+.|+-..|.+++..--+ -++-+.++...|..-|....-+++|..+|++. -++
T Consensus 581 ~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 581 LMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 977766 56654 5777888899999999999998776443 45668899999999999999999999999987 478
Q ss_pred CCHHHHHHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCC
Q 003868 585 PSAPIWEALLAGC-RIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636 (790)
Q Consensus 585 p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 636 (790)
|+..-|..++..| ++.|++.+|..+|+......|.+....-.|..++...|.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999887 677999999999999999999999999999998888875
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=1.8e-11 Score=120.72 Aligned_cols=320 Identities=17% Similarity=0.170 Sum_probs=203.1
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh---hhhhhhhHHHHHHHhCCCCchhHHHH
Q 003868 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE---EEKQCMQMHCTVVKSGTGLFTSVLNA 190 (790)
Q Consensus 114 ~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~ 190 (790)
+++=|.|+.. ...|...++.-+|+.|+..|+..+...-..|++..+-... ..+. .+.+-.+.+.|-.. ..+
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E-~~~Fv~~~~~~E~S-~~s--- 189 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAE-WEEFVGMRNFGEDS-TSS--- 189 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchh-HHHHhhcccccccc-ccc---
Confidence 4556666654 4568899999999999999988887766666654332222 1110 01111222222211 111
Q ss_pred HHHhhhccCCCCccCCCCCHHHHHHHHccCCCCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhH
Q 003868 191 LISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270 (790)
Q Consensus 191 li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~ 270 (790)
+.+=+-|. ++-+...+...++..||.|+++--..+.|.+++++-
T Consensus 190 ----------------WK~G~vAd-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~------------------- 233 (625)
T KOG4422|consen 190 ----------------WKSGAVAD-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEH------------------- 233 (625)
T ss_pred ----------------cccccHHH-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHH-------------------
Confidence 12233344 444455567789999999999999999999999987
Q ss_pred HHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhh----
Q 003868 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ---- 346 (790)
Q Consensus 271 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~---- 346 (790)
.....+.+..+|+.+|.+-.-+ .++++..+|.. ....||..++|+++.+..+.|+++.|++.+-+
T Consensus 234 ---~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMis----qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~E 302 (625)
T KOG4422|consen 234 ---RAAKGKVYREAFNGLIGASSYS----VGKKLVAEMIS----QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGE 302 (625)
T ss_pred ---HHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHH----hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 6667778888888888775433 33677777877 77778888888888888888877766544332
Q ss_pred CC----CCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCC--
Q 003868 347 MP----ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL----EGFKP-- 416 (790)
Q Consensus 347 m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-- 416 (790)
|. +|...+|..+|..+++.++.. ..|..++.+.+. ..++|
T Consensus 303 mKeiGVePsLsSyh~iik~f~re~dp~------------------------------k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 303 MKEIGVEPSLSSYHLIIKNFKRESDPQ------------------------------KVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred HHHhCCCcchhhHHHHHHHhcccCCch------------------------------hhhHHHHHHHHHhhccCcccCCC
Confidence 22 245555555555544444421 223333333332 22222
Q ss_pred --CHHHHHHHHHHHHccCChHHHHHHHHHHHHh----CCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhcCCC----CC
Q 003868 417 --CDYAFAGAITSCAGLGALENGRQLHAQLVHS----GYDSS---LSAGNALITMYARCGVVEAANCVFNTMPN----VD 483 (790)
Q Consensus 417 --~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~ 483 (790)
|...|...+..|.+..+.+.|.+++..+... -+.++ ..-|..+....+....++.-...|+.|.. |+
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~ 432 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH 432 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence 4556778888888888888888887766532 11222 23455667777777788888888887764 56
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003868 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516 (790)
Q Consensus 484 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 516 (790)
..+-..++.+....|.++-.-++|..|+..|-.
T Consensus 433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 433 SQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred chhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 666666777777777777777777777766533
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.59 E-value=9.5e-10 Score=114.31 Aligned_cols=605 Identities=13% Similarity=0.088 Sum_probs=350.6
Q ss_pred hhccchhHHHHHHhhcCCC-----CCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCC---C
Q 003868 8 YIRTLANRYASQLQLCDPR-----NPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ---P 79 (790)
Q Consensus 8 ~~~~~~~~~~~ll~~~~~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~ 79 (790)
+..+++..|..-|...-+. ++ ...|+.++....+.+.. ++.-+-.-.+.--..|.+..|+.+...-.+ .
T Consensus 241 qtvvDpkgYLtdL~sm~p~~~~dl~D--ikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cpr 317 (913)
T KOG0495|consen 241 QTVVDPKGYLTDLNSMIPTSGGDLED--IKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEECPR 317 (913)
T ss_pred CcccCchHHHhHHHhcCCCccCcHHH--HHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCc
Confidence 3444555555555554332 23 44555566655555432 333333333333445667777766655443 2
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHHhhCCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHH
Q 003868 80 DIVARTTLIAAYSASDNVKLAREMFNKTPLK-MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA 158 (790)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 158 (790)
+..+|--- ++....+.|..+....... +.++..|---+. -..+...=.++++..++. ++-+...|-.
T Consensus 318 SeDvWLea----iRLhp~d~aK~vvA~Avr~~P~Sv~lW~kA~d---LE~~~~~K~RVlRKALe~-iP~sv~LWKa---- 385 (913)
T KOG0495|consen 318 SEDVWLEA----IRLHPPDVAKTVVANAVRFLPTSVRLWLKAAD---LESDTKNKKRVLRKALEH-IPRSVRLWKA---- 385 (913)
T ss_pred hHHHHHHH----HhcCChHHHHHHHHHHHHhCCCChhhhhhHHh---hhhHHHHHHHHHHHHHHh-CCchHHHHHH----
Confidence 33333211 2233344455544433332 122333321111 111222223444444442 2222333333
Q ss_pred Hhcchh-hhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCC---CCeeeHHHHHHH
Q 003868 159 LALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE---RDELSWTTMMTG 234 (790)
Q Consensus 159 ~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~ 234 (790)
...... ..++ .+....++.- +.+.. |.-+|++. .-++.|.++++...+ .+...|.+-...
T Consensus 386 AVelE~~~dar--ilL~rAvecc-p~s~d----LwlAlarL---------etYenAkkvLNkaRe~iptd~~IWitaa~L 449 (913)
T KOG0495|consen 386 AVELEEPEDAR--ILLERAVECC-PQSMD----LWLALARL---------ETYENAKKVLNKAREIIPTDREIWITAAKL 449 (913)
T ss_pred HHhccChHHHH--HHHHHHHHhc-cchHH----HHHHHHHH---------HHHHHHHHHHHHHHhhCCCChhHHHHHHHH
Confidence 233333 3343 4444444432 22223 33445555 778888888876543 477888887777
Q ss_pred HHhCCChhHHHHHHHhcccC------------------------CcchhhHHHHhhhhhHHHHHHhCccC--ChhhHHHH
Q 003868 235 YVKNDYLDAAREFLDGMSEN------------------------VGVAWNALISGYVHRELKMLMLRIQL--DEFTYTSV 288 (790)
Q Consensus 235 ~~~~g~~~~A~~l~~~m~~~------------------------~~~~~~~li~~~~~~~~~m~~~~~~p--~~~t~~~l 288 (790)
--.+|+.+...+++++-... .+.+..++|... ...|+.- -..||..-
T Consensus 450 EE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~av-------igigvEeed~~~tw~~d 522 (913)
T KOG0495|consen 450 EEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAV-------IGIGVEEEDRKSTWLDD 522 (913)
T ss_pred HHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHH-------HhhccccchhHhHHhhh
Confidence 77888888888887653110 111122221111 1122211 12455555
Q ss_pred HHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHc
Q 003868 289 ISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNAILSAYVSA 365 (790)
Q Consensus 289 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 365 (790)
...|.+.+.++-++.+|...++ -++.+..+|...+..--..|..+.-..+|++... ...+.|-.....+-..
T Consensus 523 a~~~~k~~~~~carAVya~alq-----vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a 597 (913)
T KOG0495|consen 523 AQSCEKRPAIECARAVYAHALQ-----VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA 597 (913)
T ss_pred HHHHHhcchHHHHHHHHHHHHh-----hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc
Confidence 5666666666666666666664 2333455566555555556666666666666543 2344555556666666
Q ss_pred CCHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 003868 366 GLIDEAKSLFEAMRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442 (790)
Q Consensus 366 g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~ 442 (790)
|++..|..++....+. +...|-.-+..-..+..+++|..+|.+.... .|+...|.--+..---+++.++|.++++
T Consensus 598 gdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence 7777777776666553 2345666666666777777777777766653 4455554444444445566777777776
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-C
Q 003868 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--V-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP-D 518 (790)
Q Consensus 443 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~ 518 (790)
+.++. ++.-...|-.+...|-..++++.|.+.|..-.+ | .+..|-.|...--+.|..-+|..++++.+.. .| |
T Consensus 676 e~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~ 752 (913)
T KOG0495|consen 676 EALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKN 752 (913)
T ss_pred HHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCc
Confidence 66665 344445666667777777777777777765544 3 3445666666666667777777777776653 33 3
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003868 519 RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCR 598 (790)
Q Consensus 519 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 598 (790)
..-|...+..-.+.|..+.|..+..+..+ ..+.+...|..-|.+..+.++-..+.+.+++. +.|+.+.-++...+.
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw 828 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFW 828 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHH
Confidence 35666677777777777777777766665 34555566666666666666666666666665 456666777778888
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCE
Q 003868 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNK 666 (790)
Q Consensus 599 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~ 666 (790)
....++.|...|++++..+|++..+|..+-..+...|.-++-.+++++... ..|.-|..|+.+...
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAVSKD 894 (913)
T ss_pred HHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHHhhh
Confidence 889999999999999999999999999999999999999999999998865 345557777765543
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.58 E-value=8.8e-11 Score=126.80 Aligned_cols=565 Identities=13% Similarity=0.095 Sum_probs=298.5
Q ss_pred chHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhh---CCCCChHHHHHHHHHHhcCCChHHHHHHHhhC
Q 003868 31 SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE---IPQPDIVARTTLIAAYSASDNVKLAREMFNKT 107 (790)
Q Consensus 31 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 107 (790)
.+.|..++..+++.. +.....|-+|-..|-+.|+..++...+-. +...|...|-.+-....+.|++..|+-.|.+.
T Consensus 155 ~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rA 233 (895)
T KOG2076|consen 155 LEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRA 233 (895)
T ss_pred HHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 555555555555443 23444455555555555555555443322 12234445555555555555555555555544
Q ss_pred CCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchhhhhhhhhHHHHHHHhCCCCchh
Q 003868 108 PLK-MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS 186 (790)
Q Consensus 108 ~~~-~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 186 (790)
.+. +++...+---...|-+.|+...|.+-|.+|.....+.|-.-+..++.
T Consensus 234 I~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~----------------------------- 284 (895)
T KOG2076|consen 234 IQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIR----------------------------- 284 (895)
T ss_pred HhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHH-----------------------------
Confidence 442 22222222223344455555555555555554321001011111111
Q ss_pred HHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCC-----CCeeeHHHHHHHHHhCCChhHHHHHHHhcccC----Ccc
Q 003868 187 VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE-----RDELSWTTMMTGYVKNDYLDAAREFLDGMSEN----VGV 257 (790)
Q Consensus 187 ~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~ 257 (790)
..+..|... ++-+.|.+.++.... -+...++.++..|.+...++.|......+..+ |..
T Consensus 285 ---~~~~~~~~~---------~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~ 352 (895)
T KOG2076|consen 285 ---RVAHYFITH---------NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDS 352 (895)
T ss_pred ---HHHHHHHHh---------hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChh
Confidence 112223333 444666666665543 25566889999999999999999888877431 111
Q ss_pred hh----------hHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHH
Q 003868 258 AW----------NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327 (790)
Q Consensus 258 ~~----------~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 327 (790)
.| |.+.. ...++.++... .-+.-++......+....+...+..... .+..++..|.-+
T Consensus 353 e~~~~~~~~~~~~~~~~---------~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~--~~~d~~dL~~d~ 420 (895)
T KOG2076|consen 353 EWDTDERRREEPNALCE---------VGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNV--WVSDDVDLYLDL 420 (895)
T ss_pred hhhhhhhcccccccccc---------CCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcC--ChhhhHHHHHHH
Confidence 11 00000 11122222222 1122233444555555555555555211 145567788889
Q ss_pred HHHHHHCCCHHHHHHHHhhCCC----CChhHHHHHHHHHHHcCCHHHHHHHHHHhccCCh---hHHHHHHHHHHhcCChH
Q 003868 328 VTLYWKCGKVNEARDIFNQMPE----RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL---LSWTVMISGLAQNGYGE 400 (790)
Q Consensus 328 i~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~ 400 (790)
.++|...|++.+|.++|..+.. .+...|-.+...|...|..++|.+.|++...-++ ..--+|...+.+.|+.+
T Consensus 421 a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~E 500 (895)
T KOG2076|consen 421 ADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHE 500 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHH
Confidence 9999999999999999998875 3667899999999999999999999999886443 45556667788899999
Q ss_pred HHHHHHHHHHH--------cCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh----------------------CCC
Q 003868 401 EGLKLFSQMRL--------EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS----------------------GYD 450 (790)
Q Consensus 401 ~A~~~~~~m~~--------~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----------------------g~~ 450 (790)
+|++.+..+.. .+..|+..........+...|+.++-..+-..|+.. +..
T Consensus 501 kalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~ 580 (895)
T KOG2076|consen 501 KALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSK 580 (895)
T ss_pred HHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhcccccc
Confidence 99999988542 234455555555566667777776644443333211 011
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcC--------CCCCHh----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--
Q 003868 451 SSLSAGNALITMYARCGVVEAANCVFNTM--------PNVDSV----SWNAMIAALGQHGNGARAIELYEQMLKEGIL-- 516 (790)
Q Consensus 451 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~--------~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-- 516 (790)
........++.+-.+.++....++-...- ...... .+.-++..+++.+++++|+.+...+......
T Consensus 581 ~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~ 660 (895)
T KOG2076|consen 581 RYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQ 660 (895)
T ss_pred ccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhc
Confidence 11122222333333333322211111111 001111 1233445556666666666666655543211
Q ss_pred CCh-h-hH-HHHHHHHHccCCHHHHHHHHHHcccCCCCCCC---hhHHHHH-----------------------------
Q 003868 517 PDR-I-TF-LTVLSACNHAGLVKEGRRYFETMHGPYGIPPG---EDHYARF----------------------------- 561 (790)
Q Consensus 517 p~~-~-t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l----------------------------- 561 (790)
++. . .+ ...+.++...+++..|..+++.|...++...+ ...|++.
T Consensus 661 ~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~ 740 (895)
T KOG2076|consen 661 DSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTP 740 (895)
T ss_pred cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCc
Confidence 111 0 11 22333445556666666666655543222211 1223311
Q ss_pred ------HHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHH-H----------HHhCCHHHHHHHHHHHHhcCCC--CC
Q 003868 562 ------IDLLCRAGKFSEAKDVIDSL-PFKPSAPIWEALLAG-C----------RIHGNIDLGIQAAEQLFQLMPH--HA 621 (790)
Q Consensus 562 ------i~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~-~----------~~~g~~~~a~~~~~~~~~~~p~--~~ 621 (790)
...+..++.+..|+..+-+. ...||.+..+.++.. + .+|-.+-.+...+.+..++... .-
T Consensus 741 ~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~Q 820 (895)
T KOG2076|consen 741 PLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQ 820 (895)
T ss_pred ceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHH
Confidence 12234556677776654433 234554444433322 1 1233345666777777766444 55
Q ss_pred cchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 622 GTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.++..++.+|-..|-..-|..++++..+
T Consensus 821 Ea~YNigRayh~~gl~~LA~~YYekvL~ 848 (895)
T KOG2076|consen 821 EAFYNIGRAYHQIGLVHLAVSYYEKVLE 848 (895)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhC
Confidence 7889999999999999999999999975
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.55 E-value=2.8e-09 Score=110.93 Aligned_cols=533 Identities=12% Similarity=0.077 Sum_probs=327.1
Q ss_pred CChhHHHHHhhhCCC---CChHHHHHHHHHHhcCCChHHHHHHHhhCCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 003868 64 LKLVYARTLFDEIPQ---PDIVARTTLIAAYSASDNVKLAREMFNKTPLK-MRDTVFYNAMITAYSHNSNGHAAIELFRD 139 (790)
Q Consensus 64 ~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~n~li~~~~~~g~~~~A~~~~~~ 139 (790)
+++..|+.++....+ .++..|-+-...--..|.+..|+.+..+--+. +++...|---| +...++.|..+.-.
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vvA~ 340 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVVAN 340 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHHHH
Confidence 455666666666654 23334443333334456666666655432221 23444442222 23334444444443
Q ss_pred hhhCCCCCChhhHHHHHHHHhcchh-hhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHc
Q 003868 140 MRRDDVKPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFD 218 (790)
Q Consensus 140 m~~~g~~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~ 218 (790)
..+. -|+++. .-+.+.--..+ .... ++.....+. ++.++.+|...+.. ...++|+.++.
T Consensus 341 Avr~--~P~Sv~--lW~kA~dLE~~~~~K~--RVlRKALe~-iP~sv~LWKaAVel-------------E~~~darilL~ 400 (913)
T KOG0495|consen 341 AVRF--LPTSVR--LWLKAADLESDTKNKK--RVLRKALEH-IPRSVRLWKAAVEL-------------EEPEDARILLE 400 (913)
T ss_pred HHHh--CCCChh--hhhhHHhhhhHHHHHH--HHHHHHHHh-CCchHHHHHHHHhc-------------cChHHHHHHHH
Confidence 3322 233221 11222111111 1111 222222221 34456666666554 66667888887
Q ss_pred cCCCCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCCh
Q 003868 219 EMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLF 298 (790)
Q Consensus 219 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 298 (790)
+..+--.. -..|..+|++..-++.|..++... ...++-+...|.+....=-..|+.
T Consensus 401 rAveccp~-s~dLwlAlarLetYenAkkvLNka-----------------------Re~iptd~~IWitaa~LEE~ngn~ 456 (913)
T KOG0495|consen 401 RAVECCPQ-SMDLWLALARLETYENAKKVLNKA-----------------------REIIPTDREIWITAAKLEEANGNV 456 (913)
T ss_pred HHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHH-----------------------HhhCCCChhHHHHHHHHHHhcCCH
Confidence 65542111 122444566677788999999875 334555666666666666667777
Q ss_pred HHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC------CChhHHHHHHHHHHHcCCHHHHH
Q 003868 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE------RDLVSWNAILSAYVSAGLIDEAK 372 (790)
Q Consensus 299 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~ 372 (790)
+....+....+..-...|...+..-|-.=...+-..|.+-.+..+...... .--.+|+.-...|.+.+.++-|.
T Consensus 457 ~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~car 536 (913)
T KOG0495|consen 457 DMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECAR 536 (913)
T ss_pred HHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHH
Confidence 777777766655444456666666666666666666766666666655442 22346777777777777777777
Q ss_pred HHHHHhccC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCC
Q 003868 373 SLFEAMRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449 (790)
Q Consensus 373 ~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~ 449 (790)
.+|....+- +...|...+..--..|..++...+|++.... ++-....+.......-..|+...|+.++..+.+..
T Consensus 537 AVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~- 614 (913)
T KOG0495|consen 537 AVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN- 614 (913)
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-
Confidence 777766652 3355666555555567777777777777764 33344445455555666688888888887777764
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-hHHHHH
Q 003868 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPN--VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI-TFLTVL 526 (790)
Q Consensus 450 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll 526 (790)
+.+..++-+-+..-....+++.|+.+|.+... ++...|.--+....-.++.++|++++++.++ .-|+.. .|..+.
T Consensus 615 pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 615 PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLG 692 (913)
T ss_pred CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHh
Confidence 33667777777777777888888888876653 5666666666666667777888888877777 466654 566666
Q ss_pred HHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCHHHHHHHHHHHHHhCCHH
Q 003868 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF--KPSAPIWEALLAGCRIHGNID 604 (790)
Q Consensus 527 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~ 604 (790)
..+.+.++++.|.+.|..=.+ ..+-.+-.|-.|.+.=.+.|.+-.|..++++..+ +.+...|...+..-.++|+.+
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence 677777778887777766543 3344456677777777777788888888877632 236677888888878888888
Q ss_pred HHHHHHHHHHhcCCC------------------------------CCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 605 LGIQAAEQLFQLMPH------------------------------HAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 605 ~a~~~~~~~~~~~p~------------------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
.|..+..++++.-|. |+......+.++-...++++|.+.|.+....
T Consensus 771 ~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 771 QAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred HHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 888777777765543 3556677788888889999999999998653
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.54 E-value=7.1e-11 Score=126.63 Aligned_cols=594 Identities=13% Similarity=0.076 Sum_probs=295.0
Q ss_pred hhccchhHHHHHHhhcCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCCCChHHHHHH
Q 003868 8 YIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTL 87 (790)
Q Consensus 8 ~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 87 (790)
++.|++.+|++++..++..|+ .+.|. +|..|.-...+.....++.++....+.++.+.|. +|-..+|+.|
T Consensus 20 gi~PnRvtyqsLiarYc~~gd--ieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~L 89 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGD--IEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNL 89 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCC--Ccccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHH
Confidence 355666777777777777676 66666 6666665554444444444444444444433333 3556667777
Q ss_pred HHHHhcCCC--------------------------------------------------------hHHHHHHHhhCCCCC
Q 003868 88 IAAYSASDN--------------------------------------------------------VKLAREMFNKTPLKM 111 (790)
Q Consensus 88 i~~~~~~g~--------------------------------------------------------~~~A~~~~~~~~~~~ 111 (790)
+.+|.+.|| ++.+.+++..+|...
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 777766666 333333333333210
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCC-CCChhhHHHHHHHHhcchh-hhhhhhhHHHHHHHhCCCCchhHHH
Q 003868 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV-KPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLN 189 (790)
Q Consensus 112 ~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~ 189 (790)
.+. ..-.+++-+..... -.+-+..|.+.+. .|++.+|..++.+....|+ +.++ .+...|.+.|+..+..-+-
T Consensus 170 ~~~-p~~vfLrqnv~~nt---pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak--~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 170 WNA-PFQVFLRQNVVDNT---PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAK--NLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred ccc-hHHHHHHHhccCCc---hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHH--HHHHHHHHcCCCcccccch
Confidence 000 00001111111111 1122222333333 4777778887777777777 7777 7777777778777766555
Q ss_pred HHHHhhhccCCCCccCCCCCHHHHHHHHccCC----CCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHh
Q 003868 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMP----ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265 (790)
Q Consensus 190 ~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~ 265 (790)
.|+-. . ++...+..+...|. .|+..|+...+-....+|....+....+.-.--....++.+..|
T Consensus 244 pLl~g---~---------~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 244 PLLLG---I---------NAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred hhhhc---C---------ccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcc
Confidence 55443 2 55556666665554 46777777666666665553332222211000000011112222
Q ss_pred hhhhH--------------HHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCC---CChhHHHHHH
Q 003868 266 YVHRE--------------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE---FSLPVNNALV 328 (790)
Q Consensus 266 ~~~~~--------------~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~li 328 (790)
...+. .+..-.|+......|...... ...|.-+...++-..+.. +... .++..+..+
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~n----pt~r~s~~~V~a~~~~- 385 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLN----PTLRDSGQNVDAFGAL- 385 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcC----CccccCcchHHHHHHH-
Confidence 10000 012223333333333332222 235666667777666653 2221 122233333
Q ss_pred HHHHHCCCHHHHHHHHhhCCCCChh-HHHHHHHHHHH---cCCHHHHHHHHHHhcc----------------CChh----
Q 003868 329 TLYWKCGKVNEARDIFNQMPERDLV-SWNAILSAYVS---AGLIDEAKSLFEAMRE----------------RNLL---- 384 (790)
Q Consensus 329 ~~~~~~g~~~~A~~~f~~m~~~~~~-~~~~li~~~~~---~g~~~~A~~~~~~m~~----------------~~~~---- 384 (790)
+.+.|.+...+... .++ .-.+... .....+..++...... +...
T Consensus 386 -----------lrqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~ 453 (1088)
T KOG4318|consen 386 -----------LRQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPL 453 (1088)
T ss_pred -----------HHHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchh
Confidence 33444444433221 111 1111111 1112222222222111 0001
Q ss_pred -------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCCchhH
Q 003868 385 -------SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS--GYDSSLSA 455 (790)
Q Consensus 385 -------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~--g~~~~~~~ 455 (790)
.-+.++..++..-+..+++..-+.....-+. ..|..++.-+.....++.|..+.+++... .+..|...
T Consensus 454 ~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~ 530 (1088)
T KOG4318|consen 454 IAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPL 530 (1088)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHh
Confidence 1233444444444444444333222221111 45677777777777777777777776543 34556667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC-----CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--------------
Q 003868 456 GNALITMYARCGVVEAANCVFNTMPN-----VD-SVSWNAMIAALGQHGNGARAIELYEQMLKEGI-------------- 515 (790)
Q Consensus 456 ~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------- 515 (790)
+..+.+...+.+...++..++.++.+ ++ ..+.--+.++-+..|+.+...++++-+...|+
T Consensus 531 m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkd 610 (1088)
T KOG4318|consen 531 MTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKD 610 (1088)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeecc
Confidence 77778888888888888877777764 11 22333445555666666666555555444332
Q ss_pred ----------------CCChhhHHHHHHHH---------------------HccCCHHHHHHHHHHcccCCCC-------
Q 003868 516 ----------------LPDRITFLTVLSAC---------------------NHAGLVKEGRRYFETMHGPYGI------- 551 (790)
Q Consensus 516 ----------------~p~~~t~~~ll~a~---------------------~~~g~~~~a~~~~~~~~~~~~~------- 551 (790)
+|.+.....+.+.+ .+.|++.+|..+.+. .|+
T Consensus 611 d~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~et----pG~r~r~~RD 686 (1088)
T KOG4318|consen 611 DQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITET----PGVRCRNGRD 686 (1088)
T ss_pred chhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhcccc----CcccccCCCc
Confidence 22222222222222 122222222222110 111
Q ss_pred --------CC---------ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC---CHHHHHHHHH
Q 003868 552 --------PP---------GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG---NIDLGIQAAE 611 (790)
Q Consensus 552 --------~p---------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~ 611 (790)
.| .......|+..|.+.|+++.|..++.+++..|+..+...|...++++. ++.++...-+
T Consensus 687 r~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~e 766 (1088)
T KOG4318|consen 687 RDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETE 766 (1088)
T ss_pred cccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHH
Confidence 01 111222367788999999999999999998888888888887776654 5556666667
Q ss_pred HHHhcCCCC---CcchHhhHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 003868 612 QLFQLMPHH---AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKK 654 (790)
Q Consensus 612 ~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 654 (790)
++.++.|.. ...|.-.+....+....+-|.+.+.+..++....
T Consensus 767 kas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~ 812 (1088)
T KOG4318|consen 767 KASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVS 812 (1088)
T ss_pred HHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCC
Confidence 776665543 3334444444455556668889999998874433
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.51 E-value=4.2e-11 Score=129.21 Aligned_cols=342 Identities=15% Similarity=0.154 Sum_probs=204.9
Q ss_pred HccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhC---CCCChhHHHHHHHHHHHcCCHH
Q 003868 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM---PERDLVSWNAILSAYVSAGLID 369 (790)
Q Consensus 293 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~ 369 (790)
...|+++.|..++.++++ ..+. ....|..|...|-..|+.+++...+-.. ...|..-|-.+..-..+.|+++
T Consensus 150 farg~~eeA~~i~~EvIk----qdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIK----QDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHhCCHHHHHHHHHHHHH----hCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 334777777777777776 4432 5566777777777777777776655332 2345566777777777777777
Q ss_pred HHHHHHHHhccCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccCChHHHHHHHH
Q 003868 370 EAKSLFEAMRERNL---LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY----AFAGAITSCAGLGALENGRQLHA 442 (790)
Q Consensus 370 ~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~i~~ 442 (790)
+|.-.|.+..+.++ ..+-.-+..|.+.|+...|+..|.++.....+.|.. +.-.++..+...++-+.|.+.+.
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77777777765433 333344566777777777777777776643211111 22223334444444455555555
Q ss_pred HHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003868 443 QLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMPN----VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517 (790)
Q Consensus 443 ~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 517 (790)
..... +-..+...++.++.+|.+...++.|......+.. +|..-|.+- - .++. +-..++. ...++.+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~----~-~~~~-~~~~~~~--~~~~~s~ 376 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD----E-RRRE-EPNALCE--VGKELSY 376 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh----h-hccc-ccccccc--CCCCCCc
Confidence 44432 2223334445555555555555555444333321 111111000 0 0000 0000000 0011222
Q ss_pred ChhhHHHHHHHHHcc--CCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCCHHHHHH
Q 003868 518 DRITFLTVLSACNHA--GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP---FKPSAPIWEA 592 (790)
Q Consensus 518 ~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~ 592 (790)
+...+ .+.-+..+. +...+++..|..-... ...-+...|.-+.++|...|++.+|+.+|..+- ...+..+|--
T Consensus 377 ~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~-~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 377 DLRVI-RLMICLVHLKERELLEALLHFLVEDNV-WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred cchhH-hHhhhhhcccccchHHHHHHHHHHhcC-ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 22221 111222333 3444444444332221 234457789999999999999999999999872 2235679999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 593 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+...|...|.+++|.+.|++++.+.|++..+-..|+.+|...|+.++|.+++..+..
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 999999999999999999999999999999999999999999999999999999863
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.50 E-value=4e-14 Score=144.56 Aligned_cols=256 Identities=18% Similarity=0.173 Sum_probs=111.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 003868 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG-AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468 (790)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 468 (790)
...+.+.|++++|++++++......+|+...|-. +...+-..++.+.|.+.++.+...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 4555666778888888765544432344444444 333445677888888888888776533 55566777777 68889
Q ss_pred HHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHccCCHHHHHHHHHHc
Q 003868 469 VEAANCVFNTMPN--VDSVSWNAMIAALGQHGNGARAIELYEQMLKEG-ILPDRITFLTVLSACNHAGLVKEGRRYFETM 545 (790)
Q Consensus 469 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 545 (790)
+++|.++++..-+ ++...+..++..+...|+++++.+++++..... ..++...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999888876643 566778888888999999999999999987543 2345567777888889999999999999999
Q ss_pred ccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcc
Q 003868 546 HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP--FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623 (790)
Q Consensus 546 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 623 (790)
.+. .+.+......++..+...|+.+++.++++... .+.|+..|..+..++...|+.++|...++++....|+|+..
T Consensus 173 l~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 173 LEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred HHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 863 33357788899999999999999888877651 23456678999999999999999999999999999999999
Q ss_pred hHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 624 YVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 624 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
...+++++...|+.++|.+++.+..+
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999887643
No 37
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.49 E-value=2.1e-10 Score=123.18 Aligned_cols=532 Identities=12% Similarity=0.042 Sum_probs=303.9
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCC----CChHHHHHHHHHHhcCCChHHHHHHHhhCCCC
Q 003868 35 RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ----PDIVARTTLIAAYSASDNVKLAREMFNKTPLK 110 (790)
Q Consensus 35 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 110 (790)
..++..+...|+.|+.+||..||..||..|+.+.|- +|.-|.- -+...++.++.+..+.++.+.+. .
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------e- 80 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------E- 80 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------C-
Confidence 568899999999999999999999999999999999 8887764 45678899999999999987766 3
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHH-hhhCCCCCChhhHHHHHHHHhcchh-hhhhhhhHHHH-HHHhCCCCchhH
Q 003868 111 MRDTVFYNAMITAYSHNSNGHAAIELFRD-MRRDDVKPDNFTFTSVLSALALIVE-EEKQCMQMHCT-VVKSGTGLFTSV 187 (790)
Q Consensus 111 ~~~~~~~n~li~~~~~~g~~~~A~~~~~~-m~~~g~~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~~-~~~~g~~~~~~~ 187 (790)
|...+|+.|..+|.+.||... ++..++ |. .+...+...|- .... .+.-. -...++.||..
T Consensus 81 -p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe------------~i~~sfs~~Gvgs~e~--~fl~k~~c~p~~lpda~- 143 (1088)
T KOG4318|consen 81 -PLADTYTNLLKAYRIHGDLIL-FEVVEQDLE------------SINQSFSDHGVGSPER--WFLMKIHCCPHSLPDAE- 143 (1088)
T ss_pred -CchhHHHHHHHHHHhccchHH-HHHHHHHHH------------HHHhhhhhhccCcHHH--HHHhhcccCcccchhHH-
Confidence 888899999999999999876 333333 22 12222222222 1110 00000 00112223332
Q ss_pred HHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCCC--CeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHh
Q 003868 188 LNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER--DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265 (790)
Q Consensus 188 ~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~ 265 (790)
|.......+ |-++.+.+++..+|.- +. ..-.+++-...... -..++...
T Consensus 144 -n~illlv~e----------glwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~nt--pvekLl~~--------------- 194 (1088)
T KOG4318|consen 144 -NAILLLVLE----------GLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNT--PVEKLLNM--------------- 194 (1088)
T ss_pred -HHHHHHHHH----------HHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCc--hHHHHHHH---------------
Confidence 222222222 6777788888777632 11 00001222221111 11122221
Q ss_pred hhhhHHHHHHhCc-cCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHH
Q 003868 266 YVHRELKMLMLRI-QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344 (790)
Q Consensus 266 ~~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f 344 (790)
..... .|++.+|..++......|+.+.|..++..|.+ .|++.+..-+-.|+-+ .++..-+..+.
T Consensus 195 --------cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke----~gfpir~HyFwpLl~g---~~~~q~~e~vl 259 (1088)
T KOG4318|consen 195 --------CKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE----KGFPIRAHYFWPLLLG---INAAQVFEFVL 259 (1088)
T ss_pred --------HHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH----cCCCcccccchhhhhc---CccchHHHHHH
Confidence 22222 59999999999999999999999999999999 7877777666666544 66766677777
Q ss_pred hhCC----CCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCC
Q 003868 345 NQMP----ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQ-----NGYGEEGLKLFSQMRLEGFK 415 (790)
Q Consensus 345 ~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~ 415 (790)
..|. .|+..|+.-.+-.+..+|....+.+..+.-..-....+..+..+... .+...-....+.+..-.|+.
T Consensus 260 rgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d 339 (1088)
T KOG4318|consen 260 RGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTD 339 (1088)
T ss_pred HHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccc
Confidence 7665 37888887777666666653322222111111111223333333111 11122222333333333444
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC---CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHh-HHHHHH
Q 003868 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD---SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV-SWNAMI 491 (790)
Q Consensus 416 p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-~~~~li 491 (790)
.....|..... ...+|.-++.+++-..+..-... .++..+..++ .+.|.+...+... .++ .-
T Consensus 340 ~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~l------------rqyFrr~e~~~~~~i~~-~~ 405 (1088)
T KOG4318|consen 340 ILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALL------------RQYFRRIERHICSRIYY-AG 405 (1088)
T ss_pred cchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHH------------HHHHHHHHhhHHHHHHH-HH
Confidence 33333322222 23366666777766665432211 1222333333 3444444332111 111 11
Q ss_pred HHHHh---cC------------ChHHHHHHHHHHHH----cCCCC-------ChhhHHHHHHHHHccCCHHHHHHHHHHc
Q 003868 492 AALGQ---HG------------NGARAIELYEQMLK----EGILP-------DRITFLTVLSACNHAGLVKEGRRYFETM 545 (790)
Q Consensus 492 ~~~~~---~g------------~~~~A~~~~~~m~~----~g~~p-------~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 545 (790)
.+... .. +...+++-+..+.. .-..| -...-+.++..|...-+..+++..-+..
T Consensus 406 qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~eky 485 (1088)
T KOG4318|consen 406 QGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKY 485 (1088)
T ss_pred HHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 11 11111111111110 00111 0112344455555555555555443333
Q ss_pred ccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---C
Q 003868 546 HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP-----FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL---M 617 (790)
Q Consensus 546 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~ 617 (790)
... -+ ...|..||+.+....++++|..+.++.. +.-|..-+..+.+...+++....+..+.++..+. .
T Consensus 486 e~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~ 561 (1088)
T KOG4318|consen 486 EDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENE 561 (1088)
T ss_pred HHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCC
Confidence 321 11 2678999999999999999999998873 2345556778888888999999898888887764 3
Q ss_pred CCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 003868 618 PHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKK 654 (790)
Q Consensus 618 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 654 (790)
|.-..+...+.+..+..|+.+...++.+-+...|+.-
T Consensus 562 ~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 562 PLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred chHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 3334566778888889999999999999998888865
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=1.5e-09 Score=108.70 Aligned_cols=493 Identities=14% Similarity=0.128 Sum_probs=346.4
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHHhhCCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHH
Q 003868 80 DIVARTTLIAAYSASDNVKLAREMFNKTPLK-MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA 158 (790)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 158 (790)
+...|-...+-=-..+++..|+.+|+..... .++...|--.+..-.++..+..|..++++....=...|-.-|--
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY---- 147 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKY---- 147 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHH----
Confidence 3344444444444567788999999877654 67788888889999999999999999998774211111111111
Q ss_pred HhcchhhhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCC--CCCeeeHHHHHHHHH
Q 003868 159 LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMP--ERDELSWTTMMTGYV 236 (790)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~ 236 (790)
+.|=-.. |++..|+++|++-. +|+...|++.|.--.
T Consensus 148 ---------------------------------~ymEE~L---------gNi~gaRqiferW~~w~P~eqaW~sfI~fEl 185 (677)
T KOG1915|consen 148 ---------------------------------IYMEEML---------GNIAGARQIFERWMEWEPDEQAWLSFIKFEL 185 (677)
T ss_pred ---------------------------------HHHHHHh---------cccHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 1111112 89999999998654 689999999999999
Q ss_pred hCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCC
Q 003868 237 KNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316 (790)
Q Consensus 237 ~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 316 (790)
+-...+.|..++++. .-+.|+..+|.-..+.=.+.|++..++.+++.++..-. +
T Consensus 186 RykeieraR~IYerf------------------------V~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~--~ 239 (677)
T KOG1915|consen 186 RYKEIERARSIYERF------------------------VLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG--D 239 (677)
T ss_pred HhhHHHHHHHHHHHH------------------------heecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh--h
Confidence 999999999999976 34569999999999888899999999999998876311 1
Q ss_pred CCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHHcCCHHHHHHH--------HHHhccCCh
Q 003868 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE-----RDLVSWNAILSAYVSAGLIDEAKSL--------FEAMRERNL 383 (790)
Q Consensus 317 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~--------~~~m~~~~~ 383 (790)
...+..++++....-..+..++.|.-+|.-..+ +....|.....-=-+-|+....... ++.+...|+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 122345566666666778888999888765443 2233454444444455654433332 344444444
Q ss_pred ---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHH---HccCChHHHHHHHHHHHHhCCC
Q 003868 384 ---LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY-------AFAGAITSC---AGLGALENGRQLHAQLVHSGYD 450 (790)
Q Consensus 384 ---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~---~~~g~~~~a~~i~~~~~~~g~~ 450 (790)
.+|--.+..-...|+.+...++|++.... ++|-.. .|.-+=-+| ....+.+.++++++..++ -++
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcC
Confidence 57777777778889999999999999875 566321 121111122 356889999999999988 356
Q ss_pred CchhHHHHHHHHHH----hcCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHH
Q 003868 451 SSLSAGNALITMYA----RCGVVEAANCVFNTMPN--VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFL 523 (790)
Q Consensus 451 ~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~ 523 (790)
...+++.-+=-+|+ ++.++..|.+++..... |-..++...|..-.+.++++.+..+|++.++ ..|.. .+|.
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~ 475 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWS 475 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHH
Confidence 66677776666665 57899999999988764 7778888888888999999999999999999 55644 6777
Q ss_pred HHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH----
Q 003868 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSAPIWEALLAGCR---- 598 (790)
Q Consensus 524 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~---- 598 (790)
.....=...|+.+.|..+|.-+........-...|.+.|+.-...|.++.|..+++++ ...+...+|-++...-.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~ 555 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASE 555 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccc
Confidence 7777777889999999999999875344444567788888888999999999999987 33455668887765443
Q ss_pred -HhC-----------CHHHHHHHHHHHHhcCCCC--Ccc----hHhhHHHHHhcCChhHHHHHHHHHH
Q 003868 599 -IHG-----------NIDLGIQAAEQLFQLMPHH--AGT----YVLLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 599 -~~g-----------~~~~a~~~~~~~~~~~p~~--~~~----~~~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
+.+ +...|..+|+++.....+. ..- .....+.-...|.-.+...+-++|.
T Consensus 556 ~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 556 GQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred cccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 334 5678888888877542221 122 2233344455677677776666664
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=9.8e-12 Score=130.05 Aligned_cols=242 Identities=12% Similarity=0.108 Sum_probs=186.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHH-HHHH
Q 003868 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG--YDSSLSAGNALITMYARCGVVEA-ANCV 475 (790)
Q Consensus 399 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~-A~~~ 475 (790)
..+|+..|.+... .+.-+.+....+..+|...+++++++.+|+.+.+.. .--+..+|.+.+--+-+.=.+.. |..+
T Consensus 335 ~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 6888888888443 345555777778888999999999999999888752 22356667766654433222221 2233
Q ss_pred HhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC
Q 003868 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP-DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554 (790)
Q Consensus 476 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 554 (790)
.+.. ...+.+|-++.++|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+... ..+
T Consensus 414 i~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~ 485 (638)
T KOG1126|consen 414 IDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVD 485 (638)
T ss_pred HhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCC
Confidence 3332 34678999999999999999999999999988 677 44688888778888888999999999865 346
Q ss_pred hhHHHH---HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHH
Q 003868 555 EDHYAR---FIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629 (790)
Q Consensus 555 ~~~~~~---li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 629 (790)
..+|++ |...|.|.++++.|+-.|++. .+.| +.++.-.+...+.+.|+.|+|++++++++.++|.|+-.-...+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 666665 456788999999999999886 5666 45566677777888899999999999999999999998899999
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 003868 630 MYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 630 ~~~~~g~~~~a~~~~~~m~~ 649 (790)
++...+++++|.+.++++++
T Consensus 566 il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHhhcchHHHHHHHHHHHH
Confidence 99999999999999999876
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=6.7e-11 Score=118.82 Aligned_cols=376 Identities=16% Similarity=0.109 Sum_probs=252.5
Q ss_pred HHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCC-hhhHHHHHHHHHccCChHHHHHHHHH
Q 003868 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLD-EFTYTSVISACANSGLFRLGKQVHAY 307 (790)
Q Consensus 229 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~ 307 (790)
-..-.-|.++|++++|++.+.+. ....|| +..|...-.+|...|+++.+.+--..
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~A------------------------I~l~p~epiFYsNraAcY~~lgd~~~Vied~Tk 174 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQA------------------------IELCPDEPIFYSNRAACYESLGDWEKVIEDCTK 174 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHH------------------------HhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHH
Confidence 33455678899999999999965 456788 67777787888899999998887777
Q ss_pred HHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHH------------HHHHHH
Q 003868 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLID------------EAKSLF 375 (790)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~------------~A~~~~ 375 (790)
.++ .++. -+..+..-..++-+.|++++|+.= +|-..+..++....-.- ++.+.+
T Consensus 175 ALE----l~P~-Y~KAl~RRA~A~E~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~ 240 (606)
T KOG0547|consen 175 ALE----LNPD-YVKALLRRASAHEQLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKL 240 (606)
T ss_pred Hhh----cCcH-HHHHHHHHHHHHHhhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 765 3322 234455555677777887776531 12222222222222211 222222
Q ss_pred HHhccCC---hh-----------------------HHHHHHHHHHh--cC---ChHHHHHHHHHHHHc-CCCCCHH----
Q 003868 376 EAMRERN---LL-----------------------SWTVMISGLAQ--NG---YGEEGLKLFSQMRLE-GFKPCDY---- 419 (790)
Q Consensus 376 ~~m~~~~---~~-----------------------~~~~li~~~~~--~g---~~~~A~~~~~~m~~~-g~~p~~~---- 419 (790)
.+=+.|. .. +...+..++.. .+ .+..|...+.+-... -..++.-
T Consensus 241 k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~ 320 (606)
T KOG0547|consen 241 KENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDA 320 (606)
T ss_pred cccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccch
Confidence 2111111 11 11111111111 01 123333332221110 0111111
Q ss_pred -----HHHHHHHH--HHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHH
Q 003868 420 -----AFAGAITS--CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNA 489 (790)
Q Consensus 420 -----t~~~ll~~--~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~ 489 (790)
....++.+ +.-.|+.-.+.+-++.+++....+ ...|--+..+|....+.++.++.|+...+ .|+.+|..
T Consensus 321 ~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyH 399 (606)
T KOG0547|consen 321 ELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYH 399 (606)
T ss_pred hHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHh
Confidence 11112222 233578888888888888875333 33377778889999999999999998765 36678888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhc
Q 003868 490 MIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568 (790)
Q Consensus 490 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 568 (790)
-.+.+.-.+++++|..=|++.+. +.|+. ..|..+.-+..+.+.+++++..|++.++ .++..++.|+.....+...
T Consensus 400 RgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDq 475 (606)
T KOG0547|consen 400 RGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQ 475 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhH
Confidence 88888888899999999999998 67866 4777777778899999999999999998 5677789999999999999
Q ss_pred CChHHHHHHHHhC-CCCCC---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChh
Q 003868 569 GKFSEAKDVIDSL-PFKPS---------APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWD 638 (790)
Q Consensus 569 g~~~~A~~~~~~~-~~~p~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 638 (790)
++++.|.+.|+.. .++|+ +.+-.+++-.-. .+|+..|+.+++++++++|....+|..|+.+-...|+.+
T Consensus 476 qqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~ 554 (606)
T KOG0547|consen 476 QQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKID 554 (606)
T ss_pred HhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHH
Confidence 9999999999875 44444 222333333322 389999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 003868 639 DAARVRKLMR 648 (790)
Q Consensus 639 ~a~~~~~~m~ 648 (790)
+|.++|++..
T Consensus 555 eAielFEksa 564 (606)
T KOG0547|consen 555 EAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.42 E-value=3.3e-10 Score=121.21 Aligned_cols=217 Identities=11% Similarity=-0.037 Sum_probs=95.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchh-------HHHHHHHHHH
Q 003868 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS-------AGNALITMYA 464 (790)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~-------~~~~li~~y~ 464 (790)
.+...|++++|...++++.+.. +-+...+..+...+.+.|+++++.+++..+.+.+..++.. .|..++....
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555444432 2223334444444444455555555544444443221111 1122222222
Q ss_pred hcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 003868 465 RCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY 541 (790)
Q Consensus 465 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 541 (790)
+..+.+...++++..++ .++.....+..++...|+.++|.+++++..+ ..||.. ..++.+....++.+++.+.
T Consensus 241 ~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~--l~~l~~~l~~~~~~~al~~ 316 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDER--LVLLIPRLKTNNPEQLEKV 316 (398)
T ss_pred HhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHH--HHHHHhhccCCChHHHHHH
Confidence 33334444444444432 2444555555555555555555555555554 223321 1112222233555555555
Q ss_pred HHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003868 542 FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615 (790)
Q Consensus 542 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 615 (790)
.+...+ ..+-|...+.++...+.+.|++++|.+.|+.. ...|+...+..|...+...|+.++|.+.+++.+.
T Consensus 317 ~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 317 LRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555443 22333344444555555555555555555443 3344444444444445555555555555554443
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.42 E-value=1.2e-10 Score=124.40 Aligned_cols=275 Identities=10% Similarity=0.055 Sum_probs=207.9
Q ss_pred cCCHHHHHHHHHHhccC--Chh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCChHHHHH
Q 003868 365 AGLIDEAKSLFEAMRER--NLL-SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA--GAITSCAGLGALENGRQ 439 (790)
Q Consensus 365 ~g~~~~A~~~~~~m~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~ 439 (790)
.|++++|++.+....+. ++. .|-.......+.|+++.|...|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 58888888877776653 223 3333334447788899999999999874 55554333 33567888999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CHh--------HHHHHHHHHHhcCChHHHHHHHH
Q 003868 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV---DSV--------SWNAMIAALGQHGNGARAIELYE 508 (790)
Q Consensus 440 i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~--------~~~~li~~~~~~g~~~~A~~~~~ 508 (790)
.++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+. +.. .|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998876 567788899999999999999999999888752 111 33344444444555666667777
Q ss_pred HHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-C
Q 003868 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-S 586 (790)
Q Consensus 509 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~ 586 (790)
.+-+. .+.+......+..++...|+.++|.+++++..+. +|+.... ++......++.+++.+..++. ...| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66442 3446667888899999999999999999988753 5555322 233334569999999999876 3445 4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 587 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+....++...|...+++++|.+.++++++..|++ ..|..|+.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5568899999999999999999999999999987 6688999999999999999999997643
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=4.5e-11 Score=118.38 Aligned_cols=255 Identities=14% Similarity=0.113 Sum_probs=176.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 003868 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG--AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469 (790)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 469 (790)
-|.++|+++.|+++++-..+..-+.-+..-+. .+.-.-...++..|.++-+.++... .-+....+.-.+.-...|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 46677777777777776665433222222221 2222222335666666555544321 11111111112223346899
Q ss_pred HHHHHHHhcCCCCCHhHHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcc
Q 003868 470 EAANCVFNTMPNVDSVSWNAMI---AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546 (790)
Q Consensus 470 ~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 546 (790)
++|.+.|++....|...-.+|. -.+-..|+.++|++.|-++..- +.-+......+.+.|....+...|++++.+..
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 9999999998887766544443 3466789999999999887652 33455677888889999999999999999887
Q ss_pred cCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh-CC-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcch
Q 003868 547 GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS-LP-FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624 (790)
Q Consensus 547 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 624 (790)
. -++.|+.....|.++|-+.|+-..|.+..-. .. ++.+..+...|..-|....-.++++..++++--+.|+-...-
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwq 663 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQ 663 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHH
Confidence 5 5677889999999999999999999887543 33 334566666667777777778999999999988888875555
Q ss_pred HhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 625 VLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 625 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
..++.++.+.|++.+|..+++...++
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 56677778999999999999998653
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.40 E-value=6.9e-10 Score=119.41 Aligned_cols=280 Identities=13% Similarity=0.010 Sum_probs=151.3
Q ss_pred HCCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHHcCCHHHHHHHHHHhcc--CCh--hHHHHHHHHHHhcCChHHHHHH
Q 003868 333 KCGKVNEARDIFNQMPE--RD-LVSWNAILSAYVSAGLIDEAKSLFEAMRE--RNL--LSWTVMISGLAQNGYGEEGLKL 405 (790)
Q Consensus 333 ~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~--~~~~~li~~~~~~g~~~~A~~~ 405 (790)
..|+++.|.+.+....+ |+ ...+-....++.+.|+.++|.+.|.+..+ ++. ...-.....+.+.|++++|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34555555555554433 11 11222233445555666666666555432 111 1222234555556666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhH-------HHHHHHHHHhcCCHHHHHHHHhc
Q 003868 406 FSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSA-------GNALITMYARCGVVEAANCVFNT 478 (790)
Q Consensus 406 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~-------~~~li~~y~~~g~~~~A~~~~~~ 478 (790)
++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+.... +..+++.-......+...+.++.
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 66666653 22344555666666666666666666666666654332222 11111111222234455555555
Q ss_pred CCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH---HHHHHHHHccCCHHHHHHHHHHcccCCCCC
Q 003868 479 MPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF---LTVLSACNHAGLVKEGRRYFETMHGPYGIP 552 (790)
Q Consensus 479 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 552 (790)
.++ .+...+..+...+...|+.++|.+++++..+ ..||.... ..........++.+.+.+.++...+.....
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~ 332 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK 332 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence 553 3777788888888888888888888888887 35555421 111112233456666666666655432222
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHh---CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003868 553 PGEDHYARFIDLLCRAGKFSEAKDVIDS---LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615 (790)
Q Consensus 553 p~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 615 (790)
|+.....++...+.+.|++++|.+.|+. ....|+...+..+...+.+.|+.++|.+++++.++
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2114445666666666666666666662 23456666666666666666666666666666544
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=6.8e-10 Score=111.10 Aligned_cols=327 Identities=12% Similarity=0.073 Sum_probs=233.9
Q ss_pred CCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCC-hhHHHHHHHHHHhc
Q 003868 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN-LLSWTVMISGLAQN 396 (790)
Q Consensus 318 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~li~~~~~~ 396 (790)
..|...+-...-.+.+.|..+.|++.|......-+..|.+.+...--..+.+.+..+.......+ ...=-.+..++...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 33555555555566677888888888877766555556555443333333333333333333221 11112234555555
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHH-HHH
Q 003868 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY--DSSLSAGNALITMYARCGVVE-AAN 473 (790)
Q Consensus 397 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~-~A~ 473 (790)
...++++.-.......|++-+...-+....+.-...++++|+.+|+++.+... -.|..+|+.++-.--.+.++. -|.
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~ 320 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQ 320 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHH
Confidence 66788888888888878766666555555566678899999999999998731 124556665543322222222 133
Q ss_pred HHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCC
Q 003868 474 CVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552 (790)
Q Consensus 474 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 552 (790)
.++ .+.+--+.|..++.+-|.-.++.++|...|++..+ +.|.. ..|+.+..-|....+...|.+-++.+.+ -.+
T Consensus 321 ~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p 395 (559)
T KOG1155|consen 321 NVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INP 395 (559)
T ss_pred HHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCc
Confidence 332 23333456677778888889999999999999998 66766 4677777789999999999999999885 234
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHH
Q 003868 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630 (790)
Q Consensus 553 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 630 (790)
-|-..|-.|..+|.-.+...=|+-+|++. .++| |...|.+|...|.+.++.++|+..|.+++...--+..+|..|+++
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakL 475 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKL 475 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 46678889999999999999999999987 5666 778999999999999999999999999999877788999999999
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 003868 631 YANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 631 ~~~~g~~~~a~~~~~~m~~ 649 (790)
|.+.++.++|.+.+++-.+
T Consensus 476 ye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 9999999999999998765
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=4.1e-09 Score=105.67 Aligned_cols=400 Identities=13% Similarity=0.124 Sum_probs=296.6
Q ss_pred CeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHH
Q 003868 224 DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ 303 (790)
Q Consensus 224 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 303 (790)
+...|--...--..++++..|..+|++..+ +-..+...|.-.+..=.+...+..|+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALd-----------------------vd~r~itLWlkYae~Emknk~vNhARN 128 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALD-----------------------VDYRNITLWLKYAEFEMKNKQVNHARN 128 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----------------------cccccchHHHHHHHHHHhhhhHhHHHH
Confidence 344455444445556778889999987522 112344556666677778889999999
Q ss_pred HHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHhc--
Q 003868 304 VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP--ERDLVSWNAILSAYVSAGLIDEAKSLFEAMR-- 379 (790)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 379 (790)
+++..+. .-+.. ...|--.+.|--..|++..|.++|++-. +|+...|++.|.-=.+...++.|..++++..
T Consensus 129 v~dRAvt----~lPRV-dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~ 203 (677)
T KOG1915|consen 129 VWDRAVT----ILPRV-DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV 203 (677)
T ss_pred HHHHHHH----hcchH-HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee
Confidence 9999986 43333 3456666777778899999999999866 5999999999999999999999999999875
Q ss_pred cCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----ccCChHHHHHHHHHHHHhCCCCc--h
Q 003868 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA----GLGALENGRQLHAQLVHSGYDSS--L 453 (790)
Q Consensus 380 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----~~g~~~~a~~i~~~~~~~g~~~~--~ 453 (790)
.|++.+|-.....=.+.|....|..+|....+. --|...-..++.+++ +...++.|..+++.++..- +.+ .
T Consensus 204 HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~rae 280 (677)
T KOG1915|consen 204 HPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAE 280 (677)
T ss_pred cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHH
Confidence 588889998888888999999999999887663 123333334444443 5677889999999988762 222 4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHH--------hcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh---
Q 003868 454 SAGNALITMYARCGVVEAANCVF--------NTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR--- 519 (790)
Q Consensus 454 ~~~~~li~~y~~~g~~~~A~~~~--------~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--- 519 (790)
..|..+...--+-|+........ +.+.. -|-.+|--.+..-...|+.+...++|++.+.. ++|-.
T Consensus 281 eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr 359 (677)
T KOG1915|consen 281 ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKR 359 (677)
T ss_pred HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHH
Confidence 55666665555667654444332 22222 26678887888888889999999999999875 66633
Q ss_pred ----hhHHHHHHHH---HccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHH----HhcCChHHHHHHHHhC-CCCCCH
Q 003868 520 ----ITFLTVLSAC---NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLL----CRAGKFSEAKDVIDSL-PFKPSA 587 (790)
Q Consensus 520 ----~t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~~-~~~p~~ 587 (790)
..|.-+=.+| ....+++.+.++++...+ -++....++.-+--+| .|+.++..|.+++... |.-|..
T Consensus 360 ~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~ 437 (677)
T KOG1915|consen 360 YWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD 437 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch
Confidence 1232222233 356889999999999886 4555566766655554 4788999999999775 778888
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCCccCCc
Q 003868 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPG 657 (790)
Q Consensus 588 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 657 (790)
.++...|..-.+.++++....+|++.++..|.|..++...+..-...|++|.|..+|+...++...-.|.
T Consensus 438 KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpe 507 (677)
T KOG1915|consen 438 KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPE 507 (677)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHH
Confidence 8999999888999999999999999999999999999999999999999999999999888765443343
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=6.7e-11 Score=123.90 Aligned_cols=274 Identities=14% Similarity=0.060 Sum_probs=208.1
Q ss_pred CHHHHHHHHHHhccC--Ch-hHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCChHHHHHHH
Q 003868 367 LIDEAKSLFEAMRER--NL-LSWTVMISGLAQNGYGEEGLKLFSQMRLEG--FKPCDYAFAGAITSCAGLGALENGRQLH 441 (790)
Q Consensus 367 ~~~~A~~~~~~m~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~a~~i~ 441 (790)
+..+|...|.+.++. |. .....+..+|...+++++|.++|+...+.. ..-+...|+++|..+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 456777777775543 22 334556777888888888888888887642 112445666666544321 112222
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003868 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV---DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518 (790)
Q Consensus 442 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 518 (790)
.+-.-.--+..+.+|-++.++|.-.++.+.|.+.|++..+. ...+|+.+..-+.....+|.|...|+..+. +.|.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 22111223556789999999999999999999999998864 456788777778888899999999998876 6676
Q ss_pred hh-hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 003868 519 RI-TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP-GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALL 594 (790)
Q Consensus 519 ~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 594 (790)
.. .|..+...|.+.++++.|.-.|+++.+ +.| +.....++...+.+.|+.|+|++++++. ...| |+..--.-+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 64 788888899999999999999999885 455 5667778888999999999999999987 3344 444444455
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 595 AGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 595 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
..+...+++++|+..++++.++.|++...|..++.+|-+.|+.+.|+.-|.-|.+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 6677789999999999999999999999999999999999999999988887765
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=7.5e-09 Score=103.80 Aligned_cols=247 Identities=12% Similarity=0.090 Sum_probs=118.3
Q ss_pred HHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCC------ChhHHHHHHHHHH
Q 003868 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER------DLVSWNAILSAYV 363 (790)
Q Consensus 290 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~ 363 (790)
.++-.....+++.+-...... .|+..+...-+....++-...+++.|+.+|+++.+. |..+|+.++ |+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~----~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv 308 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSS----VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HH
Confidence 344444455666666666665 555555555555555566666777777777777642 344555544 22
Q ss_pred HcCCHHHH--HHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 003868 364 SAGLIDEA--KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441 (790)
Q Consensus 364 ~~g~~~~A--~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~ 441 (790)
++.+..-+ -...-.+-+=-+.|...+.+-|.-.++.++|...|+...+.+ +-....++.+..-|..+.+...|.+-+
T Consensus 309 ~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 309 KNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 22221100 000011111123444445555555555555555555555432 112233444444455555555555555
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003868 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518 (790)
Q Consensus 442 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 518 (790)
+.+++-. +.|-..|-.|..+|.-.+...-|+-.|++..+ .|...|.+|..+|.+.++.++|++.|.+....|- .+
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te 465 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TE 465 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cc
Confidence 5544432 33444444455555555555555555544432 2445555555555555555555555555444331 13
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHc
Q 003868 519 RITFLTVLSACNHAGLVKEGRRYFETM 545 (790)
Q Consensus 519 ~~t~~~ll~a~~~~g~~~~a~~~~~~~ 545 (790)
...+..|...+-+.++.++|..+|.+.
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344445555555555555555444443
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.32 E-value=1.5e-09 Score=116.74 Aligned_cols=279 Identities=11% Similarity=0.021 Sum_probs=201.1
Q ss_pred HHcCCHHHHHHHHHHhccC--C-hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCChHHH
Q 003868 363 VSAGLIDEAKSLFEAMRER--N-LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD--YAFAGAITSCAGLGALENG 437 (790)
Q Consensus 363 ~~~g~~~~A~~~~~~m~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a 437 (790)
...|+++.|.+.+.+..+. + ...+-.......+.|+.+.|.+.+.+..+.. |+. ..-......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 5579999999999888764 2 2344555677888899999999999987643 443 2333346777889999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHH----HHHHHHhcCChHHHHHHHHHH
Q 003868 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNA----MIAALGQHGNGARAIELYEQM 510 (790)
Q Consensus 438 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~----li~~~~~~g~~~~A~~~~~~m 510 (790)
...++.+.+.. +.+..+...+...|...|++++|.+.++...+ .+...+.. ...+....+..+++.+.+.++
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999886 55677888999999999999999999988774 23333321 111223333344444566666
Q ss_pred HHcCC---CCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhH-HHHHHHH--HHhcCChHHHHHHHHhC-CC
Q 003868 511 LKEGI---LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH-YARFIDL--LCRAGKFSEAKDVIDSL-PF 583 (790)
Q Consensus 511 ~~~g~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~--~~~~g~~~~A~~~~~~~-~~ 583 (790)
.+..- +.+...+..+...+...|+.++|.+.+++..+. .|+... .-.++.. ....++.+.+.+.+++. ..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 55311 126677888888999999999999999999864 333321 0012222 23357778888888765 33
Q ss_pred CCC-H--HHHHHHHHHHHHhCCHHHHHHHHH--HHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHH
Q 003868 584 KPS-A--PIWEALLAGCRIHGNIDLGIQAAE--QLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 584 ~p~-~--~~~~~ll~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
.|+ + ....++...|.+.|++++|.+.++ ..++..|++ ..+..++.++.+.|+.++|.+++++..
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 443 3 567789999999999999999999 567777766 457799999999999999999999864
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.30 E-value=7.9e-12 Score=127.61 Aligned_cols=216 Identities=15% Similarity=0.172 Sum_probs=85.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 003868 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471 (790)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 471 (790)
.....++.++|...++++...+.. +...+..++.. ...+++++|.++.....+.. ++...+..++..|.+.|++++
T Consensus 53 La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 53 LAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred cccccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHH
Confidence 333344455555555555443211 22233333333 34555555555554443332 233444455555666666666
Q ss_pred HHHHHhcCC-----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHc
Q 003868 472 ANCVFNTMP-----NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETM 545 (790)
Q Consensus 472 A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~ 545 (790)
+.++++.+. ..+...|..+...+.+.|+.++|++.|++..+ ..|+. .....++..+...|+.+++.+++...
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~ 206 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRL 206 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 666655532 23566677777777777777777777777777 46653 45666777777777777777777776
Q ss_pred ccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003868 546 HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615 (790)
Q Consensus 546 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 615 (790)
.+. .+.+...+..+..+|...|+.++|...+++. ...| |+.+...+..++...|+.++|.++.+++++
T Consensus 207 ~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 207 LKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHH--CcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 653 2455566677777777788888888777775 2234 556666777777778888888877777654
No 51
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.29 E-value=3.3e-07 Score=95.76 Aligned_cols=558 Identities=13% Similarity=0.145 Sum_probs=292.9
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhCCCC---CCCcchHHHHH
Q 003868 45 GFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLK---MRDTVFYNAMI 121 (790)
Q Consensus 45 g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~n~li 121 (790)
+..|....|..+=+.+ +.+......|+ ..|-..+....+.|++..-+..|+..... ......|...|
T Consensus 76 ~~~~T~~~~~~vn~c~------er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl 145 (835)
T KOG2047|consen 76 HLCPTDPAYESVNNCF------ERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYL 145 (835)
T ss_pred ccCCCChHHHHHHHHH------HHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHH
Confidence 4556666666554433 44555555665 56777888888889888888888864432 12344688888
Q ss_pred HHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh-hhhhhhhHHHHHHHh------CCCCchhHHHHHHHh
Q 003868 122 TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKS------GTGLFTSVLNALISV 194 (790)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~~~~~~------g~~~~~~~~~~li~~ 194 (790)
......|-++-++.++++.++- .|. .-..-|.-++..++ .++. +..+.++.. .-..+...|+.+.+.
T Consensus 146 ~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie~L~~~d~~~eaa--~~la~vln~d~f~sk~gkSn~qlw~elcdl 219 (835)
T KOG2047|consen 146 KFVESHGLPETSIRVYRRYLKV--APE--AREEYIEYLAKSDRLDEAA--QRLATVLNQDEFVSKKGKSNHQLWLELCDL 219 (835)
T ss_pred HHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHHHHHhccchHHHH--HHHHHhcCchhhhhhcccchhhHHHHHHHH
Confidence 8888888888889998888743 333 34455555556665 5444 444433222 124555666666666
Q ss_pred hhccCCCCccCCCCCHHHHHHHHccCCCC----CeeeHHHHHHHHHhCCChhHHHHHHHhcccC--CcchhhHHHHhhhh
Q 003868 195 YVKCVSSPFVSSRSLMGAARRVFDEMPER----DELSWTTMMTGYVKNDYLDAAREFLDGMSEN--VGVAWNALISGYVH 268 (790)
Q Consensus 195 y~~~~~~~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~~~~~li~~~~~ 268 (790)
.++.+ .. +.--....++..+..+ -...|++|..-|.+.|.+++|.++|++-... .+--++.+.+.|++
T Consensus 220 is~~p---~~---~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 220 ISQNP---DK---VQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHhCc---ch---hcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHH
Confidence 66651 11 2222334455555443 3456888888888888888888888765433 22235566666665
Q ss_pred hHH-----HHH----HhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHH-
Q 003868 269 REL-----KML----MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN- 338 (790)
Q Consensus 269 ~~~-----~m~----~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~- 338 (790)
-.. +|. ..+-+-+...+...+..+...-+.. --+...++- ...+.++..|..-+..| .|+..
T Consensus 294 FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr--~~~lNsVlL----RQn~~nV~eW~kRV~l~--e~~~~~ 365 (835)
T KOG2047|consen 294 FEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR--PLLLNSVLL----RQNPHNVEEWHKRVKLY--EGNAAE 365 (835)
T ss_pred HHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc--chHHHHHHH----hcCCccHHHHHhhhhhh--cCChHH
Confidence 443 222 1122223333322222221110000 000011110 11111333333333322 12222
Q ss_pred ------HHHHHHhhCCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHhccCCh-------hHHHHHHHHHHhcCChHHHH
Q 003868 339 ------EARDIFNQMPER--DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL-------LSWTVMISGLAQNGYGEEGL 403 (790)
Q Consensus 339 ------~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~~~~~li~~~~~~g~~~~A~ 403 (790)
+|.+-.+-...+ --..|..+..-|-.+|+.+.|..+|++..+-+- ..|......=.+..+++.|+
T Consensus 366 ~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al 445 (835)
T KOG2047|consen 366 QINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAAL 445 (835)
T ss_pred HHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 222222222211 122455666666666666666666666654321 23444444444555566666
Q ss_pred HHHHHHHHcCC-----------CC------CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 003868 404 KLFSQMRLEGF-----------KP------CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466 (790)
Q Consensus 404 ~~~~~m~~~g~-----------~p------~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 466 (790)
+++++.....- ++ +...|+..++.--..|-++..+.+++.++...+.....+.| ..-.+-..
T Consensus 446 ~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh 524 (835)
T KOG2047|consen 446 KLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEH 524 (835)
T ss_pred HHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhh
Confidence 66655432111 11 11123333333445577788888888888776543333322 22233455
Q ss_pred CCHHHHHHHHhcCCC----CCH-hHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH--HccCCHH
Q 003868 467 GVVEAANCVFNTMPN----VDS-VSWNAMIAALGQ---HGNGARAIELYEQMLKEGILPDRITFLTVLSAC--NHAGLVK 536 (790)
Q Consensus 467 g~~~~A~~~~~~~~~----~~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~~~g~~~ 536 (790)
.-++++.++|++-.. |++ ..|+..+.-+.+ ....+.|..+|++.++ |..|...-+..|+.|- ..-|...
T Consensus 525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar 603 (835)
T KOG2047|consen 525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLAR 603 (835)
T ss_pred HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 668888888887654 443 367776666554 2368889999999988 6777765444444332 2458888
Q ss_pred HHHHHHHHcccCCCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH---HHHHHHHHHHHhCCHHHHHHHH
Q 003868 537 EGRRYFETMHGPYGIPPG--EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSAP---IWEALLAGCRIHGNIDLGIQAA 610 (790)
Q Consensus 537 ~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~ 610 (790)
.|+.+++.+.. ++++. ...|+..|.--...=-+..-.+++++. ..-|+.. ...-....-.+.|.++.|..++
T Consensus 604 ~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIy 681 (835)
T KOG2047|consen 604 HAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIY 681 (835)
T ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 88888888765 44443 345665554322211111222223222 1123332 2222333335567777777777
Q ss_pred HHHHhcC-CC-CCcchHhhHHHHHhcCC
Q 003868 611 EQLFQLM-PH-HAGTYVLLSNMYANLGR 636 (790)
Q Consensus 611 ~~~~~~~-p~-~~~~~~~l~~~~~~~g~ 636 (790)
...-++- |. ++..|...=..-.+.|+
T Consensus 682 a~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 682 AHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 7666653 33 33445555555556666
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.28 E-value=9.4e-07 Score=92.47 Aligned_cols=466 Identities=14% Similarity=0.155 Sum_probs=236.2
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHhhhCCC----------CChHHHHHHHHHHhcCCCh---HHHHHHHhhCCCCCCCc-
Q 003868 49 REHIINRLIDIYCKSLKLVYARTLFDEIPQ----------PDIVARTTLIAAYSASDNV---KLAREMFNKTPLKMRDT- 114 (790)
Q Consensus 49 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----------~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~- 114 (790)
++..-+-.|..+++.+++++|.+.+..... .+...|.-+-+..++.-+. -....+++.+...-+|.
T Consensus 168 ~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~ 247 (835)
T KOG2047|consen 168 APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQL 247 (835)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHH
Confidence 334456667777777888888777777653 3444565555555543321 12233444444432333
Q ss_pred -chHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh-hhhhhhhHHHHHH-HhCCCCchhHHHHH
Q 003868 115 -VFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE-EEKQCMQMHCTVV-KSGTGLFTSVLNAL 191 (790)
Q Consensus 115 -~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~~~~-~~g~~~~~~~~~~l 191 (790)
..|++|...|.+.|.+++|.++|++-... .....-|+.+..+++.... ..+. ..+... +.|-..+.
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~---~me~a~~~~~n~ed~------ 316 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAA---KMELADEESGNEEDD------ 316 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHH---HHhhhhhcccChhhh------
Confidence 46999999999999999999999987764 3455667888888876555 2222 111111 11111111
Q ss_pred HHhhhccCCCCccCCCCCHHHHHHHHccCCC---------------CCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCc
Q 003868 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPE---------------RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256 (790)
Q Consensus 192 i~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 256 (790)
-+++-...-|+.+.. .++..|..-+.. ..|+..+-...|.+..
T Consensus 317 ----------------~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv---- 374 (835)
T KOG2047|consen 317 ----------------VDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAV---- 374 (835)
T ss_pred ----------------hhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHH----
Confidence 223333333433322 244555544433 3456666666666542
Q ss_pred chhhHHHHhhhhhHHHHHHhCccCC------hhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCC---hhHHHHH
Q 003868 257 VAWNALISGYVHRELKMLMLRIQLD------EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS---LPVNNAL 327 (790)
Q Consensus 257 ~~~~~li~~~~~~~~~m~~~~~~p~------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~l 327 (790)
..+.|- ...|..+.+.|-..|+++.|+.+|+...+ ..++.- ..+|-.-
T Consensus 375 -------------------~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~----V~y~~v~dLa~vw~~w 431 (835)
T KOG2047|consen 375 -------------------KTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK----VPYKTVEDLAEVWCAW 431 (835)
T ss_pred -------------------HccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc----CCccchHHHHHHHHHH
Confidence 122221 23467777778888888888888888876 443321 3445555
Q ss_pred HHHHHHCCCHHHHHHHHhhCCC-C--------------------ChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHH
Q 003868 328 VTLYWKCGKVNEARDIFNQMPE-R--------------------DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386 (790)
Q Consensus 328 i~~~~~~g~~~~A~~~f~~m~~-~--------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 386 (790)
.++-.+..+++.|+++.++... | +...|...+.---..|-++....+++++.+--+.|=
T Consensus 432 aemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP 511 (835)
T KOG2047|consen 432 AEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP 511 (835)
T ss_pred HHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH
Confidence 5566666777778877766542 1 223344444444444555555555555554332222
Q ss_pred HHHHH---HHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH---ccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 003868 387 TVMIS---GLAQNGYGEEGLKLFSQMRLEGFKPCDY-AFAGAITSCA---GLGALENGRQLHAQLVHSGYDSSLSAGNAL 459 (790)
Q Consensus 387 ~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~---~~g~~~~a~~i~~~~~~~g~~~~~~~~~~l 459 (790)
..+++ .+-...-++++.++|++-...=-.|+.. .|+.-|.-+. ....++.|+.+|+++.+ |.+|.-. -.+
T Consensus 512 qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~a--Kti 588 (835)
T KOG2047|consen 512 QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHA--KTI 588 (835)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHH--HHH
Confidence 22211 1222333455555555433321223322 2222222221 22345666666666655 3333211 111
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHccCCHHH
Q 003868 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR--ITFLTVLSACNHAGLVKE 537 (790)
Q Consensus 460 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 537 (790)
--.|++ .--..|....|+.++++.... +++.. ..|+..|.-....--+..
T Consensus 589 yLlYA~---------------------------lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~ 640 (835)
T KOG2047|consen 589 YLLYAK---------------------------LEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPR 640 (835)
T ss_pred HHHHHH---------------------------HHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 112221 111245555555555554432 44433 245555543333323344
Q ss_pred HHHHHHHcccCCCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhCC--C--CCCHHHHHHHHHHHHHhCCHH
Q 003868 538 GRRYFETMHGPYGIPPGE---DHYARFIDLLCRAGKFSEAKDVIDSLP--F--KPSAPIWEALLAGCRIHGNID 604 (790)
Q Consensus 538 a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~--~--~p~~~~~~~ll~~~~~~g~~~ 604 (790)
...+|++.++. -|+. ...--..++=++.|..+.|..++.-.. . ..+...|.+.=..-.+|||-+
T Consensus 641 TR~iYekaIe~---Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 641 TREIYEKAIES---LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred cHHHHHHHHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 45555555542 2222 223334455566777777777665431 1 224556666666667777744
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.26 E-value=9.3e-10 Score=109.22 Aligned_cols=198 Identities=15% Similarity=0.083 Sum_probs=163.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 003868 451 SSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527 (790)
Q Consensus 451 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 527 (790)
.....+..+...|.+.|++++|.+.|++..+ .+...+..+...+...|++++|.+.+++..+.. ..+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3356677788889999999999999987653 356778888899999999999999999998842 233456777888
Q ss_pred HHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHH
Q 003868 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDL 605 (790)
Q Consensus 528 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 605 (790)
.+...|++++|.+.++.+......+.....+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 889999999999999998764222334567778888999999999999999876 3334 46678888999999999999
Q ss_pred HHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 606 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
|...++++++..|+++..+..++.++...|++++|.++.+.+.+
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999888888888999999999999999999888764
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=1.4e-11 Score=87.93 Aligned_cols=50 Identities=30% Similarity=0.681 Sum_probs=48.4
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhc
Q 003868 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALAL 161 (790)
Q Consensus 112 ~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 161 (790)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=3.1e-08 Score=102.06 Aligned_cols=196 Identities=17% Similarity=0.143 Sum_probs=144.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 003868 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVD---SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526 (790)
Q Consensus 450 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 526 (790)
|....+|-++.-.|.-.|+.++|++.|.+...-| ...|-.....|+-.|..+.|+..+...-+. +.-..-.+.-+.
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlg 387 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLG 387 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHH
Confidence 4445556666666666677777777776654432 346777888888888888888888776652 222223444555
Q ss_pred HHHHccCCHHHHHHHHHHcccCCCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCC-CHHHHHHHHHH
Q 003868 527 SACNHAGLVKEGRRYFETMHGPYGIPP-GEDHYARFIDLLCRAGKFSEAKDVIDSL--------PFKP-SAPIWEALLAG 596 (790)
Q Consensus 527 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~ll~~ 596 (790)
--|...+..+.|.++|.+.. ++-| |+..++-+.-+....+.+.+|..+|+.. +.++ -.++|+.|..+
T Consensus 388 mey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 56777888888888888876 4444 4556666666666778888888887754 1112 34578889999
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 597 CRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 597 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
|++.+.+++|+..+++++.+.|.++.+|..++-+|...|+++.|.+.|.+...
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988753
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=5.5e-11 Score=84.78 Aligned_cols=50 Identities=28% Similarity=0.510 Sum_probs=47.6
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc
Q 003868 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531 (790)
Q Consensus 482 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 531 (790)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.18 E-value=8.4e-08 Score=95.14 Aligned_cols=274 Identities=16% Similarity=0.093 Sum_probs=154.7
Q ss_pred CCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhccC--C--hhHHHHHHHHHHhcCChHHHHHHHH
Q 003868 335 GKVNEARDIFNQMPE---RDLVSWNAILSAYVSAGLIDEAKSLFEAMRER--N--LLSWTVMISGLAQNGYGEEGLKLFS 407 (790)
Q Consensus 335 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~--~~~~~~li~~~~~~g~~~~A~~~~~ 407 (790)
|++..|+++..+-.+ .....|..-+.+--+.|+.+.|-.++.+..+. | ...+-+........|+++.|..-.+
T Consensus 98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 445555544444332 11222333333444455555555555555443 1 2334444445555555666665555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCch-------hHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 003868 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL-------SAGNALITMYARCGVVEAANCVFNTMP 480 (790)
Q Consensus 408 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~~~~ 480 (790)
++.+.+ +-+.........+|.+.|++.....+...+.+.+.-.+. .+++.+++-....+..+.-...++..+
T Consensus 178 ~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 178 QLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 555543 223334455555566666666666666666655544332 234445544444445555555666665
Q ss_pred C---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhH
Q 003868 481 N---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557 (790)
Q Consensus 481 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 557 (790)
. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+ ...+-.+.+.++.+.-.+..+.-.+..+..| ..
T Consensus 257 r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L 330 (400)
T COG3071 257 RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LL 330 (400)
T ss_pred HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hH
Confidence 3 3555666677777778888888888887777766666 2223345556666665555555554333333 55
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003868 558 YARFIDLLCRAGKFSEAKDVIDSL-PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615 (790)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 615 (790)
+.+|...|.+.+.+.+|.+.|+.. +..|+...|+-+..++.+.|+.++|.+..++.+-
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 666777777777777777777654 5667777777777777777777777777776654
No 58
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.6e-07 Score=91.53 Aligned_cols=390 Identities=11% Similarity=-0.016 Sum_probs=230.0
Q ss_pred chhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCCCC-eeeHHHHHHHHHhCCChh-HHHHHHHhcccCCc-----
Q 003868 184 FTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERD-ELSWTTMMTGYVKNDYLD-AAREFLDGMSENVG----- 256 (790)
Q Consensus 184 ~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~~~-~A~~l~~~m~~~~~----- 256 (790)
+...---.+..|-.. ++-++|.....+++.+- ..--|.|+.-+-+.|.-. ++.--+.+....-+
T Consensus 96 ~~e~~r~~aecy~~~---------~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~ 166 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQI---------GNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQV 166 (564)
T ss_pred cHHHHHHHHHHHHHH---------ccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHH
Confidence 334445677888888 88888888888887653 333444444443333221 22211111111100
Q ss_pred --chhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHc--cCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHH
Q 003868 257 --VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACAN--SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332 (790)
Q Consensus 257 --~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 332 (790)
+.-...++|...+...|....+.|...+...-+.+++. .++-..+.+.+-.+... ..++.++....++.+.|.
T Consensus 167 i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~---~~lr~NvhLl~~lak~~~ 243 (564)
T KOG1174|consen 167 IEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDN---TTLRCNEHLMMALGKCLY 243 (564)
T ss_pred HHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhh---ccCCccHHHHHHHhhhhh
Confidence 11222233333333456666666766666666665543 23333344444333331 445667778888888888
Q ss_pred HCCCHHHHHHHHhhCCCCChhHHHHH---HHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 003868 333 KCGKVNEARDIFNQMPERDLVSWNAI---LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409 (790)
Q Consensus 333 ~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 409 (790)
..|+.+.|...|++...-|+.+..+| .-.+.+.|+.+ ....+...+
T Consensus 244 ~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e-------------------------------~~~~L~~~L 292 (564)
T KOG1174|consen 244 YNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCE-------------------------------QDSALMDYL 292 (564)
T ss_pred hhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHh-------------------------------hHHHHHHHH
Confidence 88888888888887665443332222 22234455544 444444333
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhH
Q 003868 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVS 486 (790)
Q Consensus 410 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~ 486 (790)
.... +-+...|..-+......++++.|..+-+..++.. +.+...+-.-...+...|+.++|.-.|+.... -+..+
T Consensus 293 f~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~ 370 (564)
T KOG1174|consen 293 FAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEI 370 (564)
T ss_pred Hhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHH
Confidence 3211 1111111111222233445555555555544432 22333333334555666777777777776543 36778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH-HHHH-ccCCHHHHHHHHHHcccCCCCCCC-hhHHHHHHH
Q 003868 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL-SACN-HAGLVKEGRRYFETMHGPYGIPPG-EDHYARFID 563 (790)
Q Consensus 487 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 563 (790)
|.-|+..|...|++.+|+-+-+...+. +.-+..+...+. ..|. ....-++|..++++..+ +.|+ ....+.+..
T Consensus 371 Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AE 446 (564)
T KOG1174|consen 371 YRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAE 446 (564)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHH
Confidence 888888888888888888777665552 222334444332 2232 23345889999988763 4565 456677888
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc
Q 003868 564 LLCRAGKFSEAKDVIDSL-PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622 (790)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 622 (790)
.+.+.|+.+++..++++. ...||....+.|...++..+.+.+|...|..++.++|++..
T Consensus 447 L~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 447 LCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 899999999999999885 56799999999999999999999999999999999999943
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=1.9e-08 Score=96.48 Aligned_cols=290 Identities=16% Similarity=0.135 Sum_probs=147.7
Q ss_pred CCCHHHHHHHHhhCCCCChhHH---HHHHHHHHHcCCHHHHHHHHHHhccC-Ch------hHHHHHHHHHHhcCChHHHH
Q 003868 334 CGKVNEARDIFNQMPERDLVSW---NAILSAYVSAGLIDEAKSLFEAMRER-NL------LSWTVMISGLAQNGYGEEGL 403 (790)
Q Consensus 334 ~g~~~~A~~~f~~m~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~-~~------~~~~~li~~~~~~g~~~~A~ 403 (790)
..+.++|.++|-+|.+.|..++ -+|.+-|-+.|..|.|+++-+.+.+. |. .+.-.+..-|...|-++.|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3677788888888876555444 35666777777777777777766553 32 23445556666777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcCCHHHHHHHHhcC
Q 003868 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL----SAGNALITMYARCGVVEAANCVFNTM 479 (790)
Q Consensus 404 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~----~~~~~li~~y~~~g~~~~A~~~~~~~ 479 (790)
.+|..+.+.|. --......++..|-...++++|.++-..+.+.+-.+.. ..|.-|...+.
T Consensus 128 ~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~--------------- 191 (389)
T COG2956 128 DIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL--------------- 191 (389)
T ss_pred HHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh---------------
Confidence 77777665431 12234455566666666666666666655554432221 12233333333
Q ss_pred CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh-HHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHH
Q 003868 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT-FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558 (790)
Q Consensus 480 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 558 (790)
...+.+.|..++++..+ ..|+.+- =..+.+.....|+++.|.+.++.+.+. +..--..+.
T Consensus 192 ----------------~~~~~d~A~~~l~kAlq--a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl 252 (389)
T COG2956 192 ----------------ASSDVDRARELLKKALQ--ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVL 252 (389)
T ss_pred ----------------hhhhHHHHHHHHHHHHh--hCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHH
Confidence 34444555555555444 2333321 122233444455555555555554443 222223344
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHH---Hhc
Q 003868 559 ARFIDLLCRAGKFSEAKDVIDSL-PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY---ANL 634 (790)
Q Consensus 559 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~ 634 (790)
..|..+|...|+.++...++.++ ...+....-..+...-....-.+.|...+.+-+...|.--..| .|+... +..
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~-rl~~~~l~daee 331 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFH-RLMDYHLADAEE 331 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHH-HHHHhhhccccc
Confidence 44445555555555555554443 2222222223333222233333444444444444444432222 222222 234
Q ss_pred CChhHHHHHHHHHHhCCCccCCcee
Q 003868 635 GRWDDAARVRKLMRDRGVKKEPGCS 659 (790)
Q Consensus 635 g~~~~a~~~~~~m~~~g~~~~~~~s 659 (790)
|++.+..-++..|....++..|.+.
T Consensus 332 g~~k~sL~~lr~mvge~l~~~~~YR 356 (389)
T COG2956 332 GRAKESLDLLRDMVGEQLRRKPRYR 356 (389)
T ss_pred cchhhhHHHHHHHHHHHHhhcCCce
Confidence 5678888888888877677666543
No 60
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.15 E-value=5.9e-08 Score=93.16 Aligned_cols=278 Identities=15% Similarity=0.209 Sum_probs=172.9
Q ss_pred cCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC-CChh------HHHHHHHHHHHcCC
Q 003868 295 SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE-RDLV------SWNAILSAYVSAGL 367 (790)
Q Consensus 295 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~~~~------~~~~li~~~~~~g~ 367 (790)
+.+.++|.+.|-.+.+ .+ +.+..+--+|.+.|-+.|.+|.|+++-+.+.+ ||.. +...|..-|...|-
T Consensus 48 s~Q~dKAvdlF~e~l~----~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 48 SNQPDKAVDLFLEMLQ----ED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hcCcchHHHHHHHHHh----cC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhh
Confidence 4678999999999986 33 33566777899999999999999999998876 4432 34456677889999
Q ss_pred HHHHHHHHHHhccCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccCChHHHHHH
Q 003868 368 IDEAKSLFEAMRERNL---LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY----AFAGAITSCAGLGALENGRQL 440 (790)
Q Consensus 368 ~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~i 440 (790)
+|.|+.+|..+.+.+. .+...++..|.+..++++|++.-+++.+.+-++..+ .|.-+...+....+++.|...
T Consensus 123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 9999999999998544 577889999999999999999999998877665543 344455555566778888888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-
Q 003868 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR- 519 (790)
Q Consensus 441 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 519 (790)
+..+.+.+ +..+..--.+.+.+. ..|+++.|.+.++...+. .|+.
T Consensus 203 l~kAlqa~-~~cvRAsi~lG~v~~-------------------------------~~g~y~~AV~~~e~v~eQ--n~~yl 248 (389)
T COG2956 203 LKKALQAD-KKCVRASIILGRVEL-------------------------------AKGDYQKAVEALERVLEQ--NPEYL 248 (389)
T ss_pred HHHHHhhC-ccceehhhhhhHHHH-------------------------------hccchHHHHHHHHHHHHh--ChHHH
Confidence 88777654 222233333444444 445555555555555442 2322
Q ss_pred -hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 003868 520 -ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVI-DSLPFKPSAPIWEALLAGC 597 (790)
Q Consensus 520 -~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~ 597 (790)
.+...|..+|.+.|+.+++...+..+.+. .+....-..+.+......-.++|...+ +...-+|+...+..|+..-
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhh
Confidence 23444555555555555555555555432 233333333333333333333333332 3344456665555555543
Q ss_pred HH---hCCHHHHHHHHHHHH
Q 003868 598 RI---HGNIDLGIQAAEQLF 614 (790)
Q Consensus 598 ~~---~g~~~~a~~~~~~~~ 614 (790)
.. .|...+....+++++
T Consensus 326 l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 326 LADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred hccccccchhhhHHHHHHHH
Confidence 22 223344444455554
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.15 E-value=2.9e-08 Score=98.33 Aligned_cols=248 Identities=15% Similarity=0.135 Sum_probs=146.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 003868 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476 (790)
Q Consensus 397 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 476 (790)
|++.+|.++..+-.+.+-.| ...|.....+.-+.|+.+.+-.++.++.+..-.++..++-+........|+.+.|..-.
T Consensus 98 G~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 45666666665555444332 23344444455556666666666666665543455555555666666666666666555
Q ss_pred hcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHccCCHHHHHHHHHHcc
Q 003868 477 NTMP---NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-------ITFLTVLSACNHAGLVKEGRRYFETMH 546 (790)
Q Consensus 477 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~ 546 (790)
+... ..+.........+|.+.|++.....++.+|.+.|+--|. .++..+++-+.+.+..+.-...++...
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 4433 345566666667777777777777777777776655443 356666666666666666566666655
Q ss_pred cCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchH
Q 003868 547 GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYV 625 (790)
Q Consensus 547 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 625 (790)
. ..+-++..-.+++.-+.++|+.++|.+++++. +-.-|.. -...-.+.+-++.+.-++..++.+...|+++..+.
T Consensus 257 r--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~ 332 (400)
T COG3071 257 R--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLS 332 (400)
T ss_pred H--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHH
Confidence 4 33444555556666677777777777666554 2222222 12223345556666666666666666666666666
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHh
Q 003868 626 LLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 626 ~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.|+..|.+.+.|.+|.+.++...+
T Consensus 333 tLG~L~~k~~~w~kA~~~leaAl~ 356 (400)
T COG3071 333 TLGRLALKNKLWGKASEALEAALK 356 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 677777777777777666665544
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.13 E-value=1e-08 Score=114.81 Aligned_cols=243 Identities=12% Similarity=0.029 Sum_probs=174.4
Q ss_pred hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH---------ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 003868 399 GEEGLKLFSQMRLEGFKPCD-YAFAGAITSCA---------GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468 (790)
Q Consensus 399 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~---------~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 468 (790)
.++|+.+|++..+. .|+. ..+..+..++. ..+++++|...++++++.. +.+...+..+...+...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 46777777777653 4433 23333333222 2344778888888888764 4466777888888889999
Q ss_pred HHHHHHHHhcCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHH
Q 003868 469 VEAANCVFNTMPN--V-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI-TFLTVLSACNHAGLVKEGRRYFET 544 (790)
Q Consensus 469 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 544 (790)
+++|...|++..+ | +...|..+...+...|++++|+..+++..+ +.|+.. .+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999988764 3 466788888999999999999999999998 567654 333445556778999999999998
Q ss_pred cccCCCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 003868 545 MHGPYGIPP-GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSA-PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 545 ~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
+.+. .+| +...+..+...|...|++++|...++++ +..|+. ..++.+...+...| +.|...++++++..-..+
T Consensus 432 ~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 8753 234 4556778888999999999999999886 344543 44556666666666 478888888776543333
Q ss_pred cchHhhHHHHHhcCChhHHHHHHHHHHhCC
Q 003868 622 GTYVLLSNMYANLGRWDDAARVRKLMRDRG 651 (790)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 651 (790)
..+..+..+|.-.|+-+.+..+ +++.+.|
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 3444477888888998888877 7776543
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.13 E-value=8.5e-09 Score=109.68 Aligned_cols=229 Identities=18% Similarity=0.187 Sum_probs=153.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHh-----CC-CCc-hhHHHHHHHHHHhcCCHHHHHHHHhcCCC----------C
Q 003868 420 AFAGAITSCAGLGALENGRQLHAQLVHS-----GY-DSS-LSAGNALITMYARCGVVEAANCVFNTMPN----------V 482 (790)
Q Consensus 420 t~~~ll~~~~~~g~~~~a~~i~~~~~~~-----g~-~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~----------~ 482 (790)
|+..+...|...|+++.|..+++..++. |. .+. ....+.+...|...+++++|..+|+++.. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444555555555555555555554443 10 111 11223455666777777777766665532 1
Q ss_pred -CHhHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCh--hhHHHHHHHHHccCCHHHHHHHHHHcccCCC--CC
Q 003868 483 -DSVSWNAMIAALGQHGNGARAIELYEQMLK-----EGILPDR--ITFLTVLSACNHAGLVKEGRRYFETMHGPYG--IP 552 (790)
Q Consensus 483 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~ 552 (790)
-..+++.|..+|.+.|++++|..++++..+ .|..+.. .-++.+...|...+.+++|..+++...+.+. ..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 234566667777788887777777766543 2222222 2466677788899999999988887654322 22
Q ss_pred C----ChhHHHHHHHHHHhcCChHHHHHHHHhC-------CC--CCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--
Q 003868 553 P----GEDHYARFIDLLCRAGKFSEAKDVIDSL-------PF--KPS-APIWEALLAGCRIHGNIDLGIQAAEQLFQL-- 616 (790)
Q Consensus 553 p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-- 616 (790)
+ -..+|+.|...|...|++++|++++++. .. .+. ....+.|...|.+.++++.|.++|.+...+
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 2 2468999999999999999999999876 11 222 346778889999999999999999887654
Q ss_pred --CCCC---CcchHhhHHHHHhcCChhHHHHHHHHHH
Q 003868 617 --MPHH---AGTYVLLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 617 --~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
.|++ ..+|..|+.+|.+.|++++|.++.+...
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4444 4678899999999999999999998875
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=9.5e-07 Score=89.63 Aligned_cols=218 Identities=12% Similarity=0.056 Sum_probs=162.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 003868 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471 (790)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 471 (790)
.+.-.|+.-.|...|+..+.....++.. |--+...|....+-++..+.|..+.+.+ +.+..+|..-..++.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 3445677888888888888765444432 6666677888888888888888888765 4456677777788888889999
Q ss_pred HHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHccc
Q 003868 472 ANCVFNTMPNV---DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHG 547 (790)
Q Consensus 472 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 547 (790)
|..=|++.... ++..|-.+.-+.-+.+++++++..|++..+. -|+. ..|+.....+...+++++|.+.|+..++
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 99999988764 4455655655666788999999999999884 4554 5788888889999999999999998764
Q ss_pred CCCCCCC---------hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 003868 548 PYGIPPG---------EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616 (790)
Q Consensus 548 ~~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 616 (790)
+.|+ +.+...++-.-. .+++..|.+++++. .+.| ....+.+|...-.+.|+.++|+++|++...+
T Consensus 491 ---LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 491 ---LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ---hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2333 222222222222 38899999999886 5555 3457889999999999999999999998776
Q ss_pred C
Q 003868 617 M 617 (790)
Q Consensus 617 ~ 617 (790)
-
T Consensus 567 A 567 (606)
T KOG0547|consen 567 A 567 (606)
T ss_pred H
Confidence 4
No 65
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.09 E-value=2.4e-06 Score=90.36 Aligned_cols=378 Identities=17% Similarity=0.203 Sum_probs=240.1
Q ss_pred HHHHHhhhccCCCCccCCCCCHHHHHHHHcc--CCCCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhh
Q 003868 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDE--MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266 (790)
Q Consensus 189 ~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~--~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~ 266 (790)
-+-|..|.+. |.+..|.+.-.. ....|......+..++++..-+++|-++|+.+..
T Consensus 619 laaiqlyika---------~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d------------- 676 (1636)
T KOG3616|consen 619 LAAIQLYIKA---------GKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD------------- 676 (1636)
T ss_pred HHHHHHHHHc---------CCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC-------------
Confidence 3456777777 776666655421 1123555566666777777777777777776622
Q ss_pred hhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhh
Q 003868 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346 (790)
Q Consensus 267 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 346 (790)
+...+..+.+-.-+..|.++-+.... ..-+..-..-.+-+...|+++.|..-|-+
T Consensus 677 ------------------~dkale~fkkgdaf~kaielarfafp-------~evv~lee~wg~hl~~~~q~daainhfie 731 (1636)
T KOG3616|consen 677 ------------------FDKALECFKKGDAFGKAIELARFAFP-------EEVVKLEEAWGDHLEQIGQLDAAINHFIE 731 (1636)
T ss_pred ------------------HHHHHHHHHcccHHHHHHHHHHhhCc-------HHHhhHHHHHhHHHHHHHhHHHHHHHHHH
Confidence 22223333333333444443332211 00011112233344556677777766654
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChh--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003868 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL--SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424 (790)
Q Consensus 347 m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 424 (790)
.. ..-..|.+-.....|.+|+.+++.+..+++. -|..+...|...|+++.|.++|.+.- .+.-.
T Consensus 732 a~-----~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~da 797 (1636)
T KOG3616|consen 732 AN-----CLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDA 797 (1636)
T ss_pred hh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHH
Confidence 32 1222345566778899999999988887664 47778889999999999999987542 24556
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 003868 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504 (790)
Q Consensus 425 l~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 504 (790)
|..|.+.|.++.|.++-.+.. |.+.....|-+-..-.-+.|++.+|+++|-.+..|+.. |..|-++|..+..+
T Consensus 798 i~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmi 870 (1636)
T KOG3616|consen 798 IDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMI 870 (1636)
T ss_pred HHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHH
Confidence 778889999988877765443 33455566666677777889999999999988888754 77889999999888
Q ss_pred HHHHHHHHcCCCCCh--hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 003868 505 ELYEQMLKEGILPDR--ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582 (790)
Q Consensus 505 ~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 582 (790)
++.++- .|+. .|-..+..-+...|++..|...|-+... |.+-+.+|-..+.+++|.++-+.-+
T Consensus 871 rlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriakteg 935 (1636)
T KOG3616|consen 871 RLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEG 935 (1636)
T ss_pred HHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccc
Confidence 877653 4444 4666677778888999999888876543 6677888888899999988876543
Q ss_pred C----CCCHHHHHHH------HHHHHHhCCHHHHHHHH------HHHHhc-----CCCCCcchHhhHHHHHhcCChhHHH
Q 003868 583 F----KPSAPIWEAL------LAGCRIHGNIDLGIQAA------EQLFQL-----MPHHAGTYVLLSNMYANLGRWDDAA 641 (790)
Q Consensus 583 ~----~p~~~~~~~l------l~~~~~~g~~~~a~~~~------~~~~~~-----~p~~~~~~~~l~~~~~~~g~~~~a~ 641 (790)
- +.-...|..- +..+.++|-.+.|.... +-++++ ...-+.....++.-+...|++++|.
T Consensus 936 g~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edas 1015 (1636)
T KOG3616|consen 936 GANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDAS 1015 (1636)
T ss_pred cccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhh
Confidence 1 1112334322 22344556555554432 222221 1223456777888888999999997
Q ss_pred HHHHHHHh
Q 003868 642 RVRKLMRD 649 (790)
Q Consensus 642 ~~~~~m~~ 649 (790)
+-+-+..+
T Consensus 1016 khyveaik 1023 (1636)
T KOG3616|consen 1016 KHYVEAIK 1023 (1636)
T ss_pred HhhHHHhh
Confidence 76665543
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=4.2e-07 Score=93.93 Aligned_cols=286 Identities=15% Similarity=0.111 Sum_probs=151.1
Q ss_pred cCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHH
Q 003868 279 QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSW 355 (790)
Q Consensus 279 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~ 355 (790)
.-+......-..-|-..+++.+..++.+.+.+ .. ++....+..-|..+.+.|+-.+-..+=.++.+ ....+|
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle----~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW 315 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLE----KD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSW 315 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHh----hC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcch
Confidence 33444444455555566666666666666664 22 33344444445556665654443333333332 244567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 003868 356 NAILSAYVSAGLIDEAKSLFEAMRERNL---LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432 (790)
Q Consensus 356 ~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 432 (790)
-++.--|.-.|+..+|.+.|.+...-|. ..|-.....|+-.|..++|+..+...-+. ++-...-+--+.--|.+.+
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhc
Confidence 7666666666777777777776665443 46777777777777777777766655442 1111111222333455566
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003868 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512 (790)
Q Consensus 433 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 512 (790)
+++.|.++|.++.... +.|+.+.+-+.-++.+.+.+.+|...|+.... ..+....
T Consensus 395 n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~------------------------~ik~~~~ 449 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALE------------------------VIKSVLN 449 (611)
T ss_pred cHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHH------------------------Hhhhccc
Confidence 6666666666655442 44455555555555555555555555543321 0000000
Q ss_pred cCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHH
Q 003868 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSAPIWE 591 (790)
Q Consensus 513 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 591 (790)
+ ..--..+++.|..+|.+.+.+++|+..|++... -.+.+..+|.++.-.|...|+++.|.+.|.+. .++|+..+-.
T Consensus 450 e-~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~ 526 (611)
T KOG1173|consen 450 E-KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFIS 526 (611)
T ss_pred c-ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHH
Confidence 0 001223455555666666666666666666554 23445566666666666666666666666554 4566665555
Q ss_pred HHHHHHH
Q 003868 592 ALLAGCR 598 (790)
Q Consensus 592 ~ll~~~~ 598 (790)
.+++.+.
T Consensus 527 ~lL~~ai 533 (611)
T KOG1173|consen 527 ELLKLAI 533 (611)
T ss_pred HHHHHHH
Confidence 5555443
No 67
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.06 E-value=1.3e-06 Score=92.37 Aligned_cols=441 Identities=16% Similarity=0.167 Sum_probs=249.8
Q ss_pred hcCCChHHHHHHHhhCCCCCCCc-chHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchhhhhhhh
Q 003868 92 SASDNVKLAREMFNKTPLKMRDT-VFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM 170 (790)
Q Consensus 92 ~~~g~~~~A~~~~~~~~~~~~~~-~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~ 170 (790)
...|+++.|..+++..... |+. ..|-.+...-...|+..-|.+.|..+-.- ..++
T Consensus 455 id~~df~ra~afles~~~~-~da~amw~~laelale~~nl~iaercfaai~dv---------------------ak~r-- 510 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLESLEMG-PDAEAMWIRLAELALEAGNLFIAERCFAAIGDV---------------------AKAR-- 510 (1636)
T ss_pred cccCchHHHHHHHHhhccC-ccHHHHHHHHHHHHHHhccchHHHHHHHHHHHH---------------------HHHH--
Confidence 3456778887777765542 333 34666666666667666666665544210 1111
Q ss_pred hHHHHH-------HHhC-CCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCCCCeeeHHHHHHHHHhCCChh
Q 003868 171 QMHCTV-------VKSG-TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLD 242 (790)
Q Consensus 171 ~~~~~~-------~~~g-~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 242 (790)
.+|+.. +..| -..+-+-..+++.+..+ .+.+|+.+|-+-. + -..-|..|....+++
T Consensus 511 ~lhd~~eiadeas~~~ggdgt~fykvra~lail~k-----------kfk~ae~ifleqn--~---te~aigmy~~lhkwd 574 (1636)
T KOG3616|consen 511 FLHDILEIADEASIEIGGDGTDFYKVRAMLAILEK-----------KFKEAEMIFLEQN--A---TEEAIGMYQELHKWD 574 (1636)
T ss_pred HHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHh-----------hhhHHHHHHHhcc--c---HHHHHHHHHHHHhHH
Confidence 222211 1112 22333333444444443 3777777774321 1 233466677777778
Q ss_pred HHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChh
Q 003868 243 AAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322 (790)
Q Consensus 243 ~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 322 (790)
+|+.+-+.. |.+.-...-.+.++++...|+-+.|-++-. . .|
T Consensus 575 e~i~lae~~-------------------------~~p~~eklk~sy~q~l~dt~qd~ka~elk~---s----dg------ 616 (1636)
T KOG3616|consen 575 EAIALAEAK-------------------------GHPALEKLKRSYLQALMDTGQDEKAAELKE---S----DG------ 616 (1636)
T ss_pred HHHHHHHhc-------------------------CChHHHHHHHHHHHHHHhcCchhhhhhhcc---c----cC------
Confidence 877776543 222222233445555555555544433210 0 11
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHhhC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCCh-----------------
Q 003868 323 VNNALVTLYWKCGKVNEARDIFNQM--PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL----------------- 383 (790)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----------------- 383 (790)
-.-+.|..|.|.|....|.+.-..- ...|......+..++.+...+++|-.+|+++..++-
T Consensus 617 d~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaiel 696 (1636)
T KOG3616|consen 617 DGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIEL 696 (1636)
T ss_pred ccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHH
Confidence 1123466677777766665543221 123444444445555555555555555555544221
Q ss_pred ---------h-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCch
Q 003868 384 ---------L-SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL 453 (790)
Q Consensus 384 ---------~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~ 453 (790)
+ .-......+.+.|+++.|+.-|-+... ....+.+......+.+|..+++.+..... -.
T Consensus 697 arfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s 765 (1636)
T KOG3616|consen 697 ARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--AS 765 (1636)
T ss_pred HHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--cc
Confidence 1 112233344455555555554433221 12234455566677778777777665532 23
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC
Q 003868 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533 (790)
Q Consensus 454 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 533 (790)
.-|..+.+-|+..|+++.|+++|-+.. .++-.|..|.+.|+++.|.++-.+.. |-......|.+-..-.-..|
T Consensus 766 ~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehg 838 (1636)
T KOG3616|consen 766 GYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHG 838 (1636)
T ss_pred ccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhc
Confidence 346677788888888888888887643 34556778888888888887765543 22223345555555566778
Q ss_pred CHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003868 534 LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613 (790)
Q Consensus 534 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 613 (790)
.+.+|.+++-.+. .|+. -|.+|-+.|..++.+++.++-.-..-..+...+..-+-..|+...|+..|-++
T Consensus 839 kf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 839 KFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred chhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 8888887765442 3443 36788888888888888877621222235566667777888888888777654
Q ss_pred HhcCCCCCcchHhhHHHHHhcCChhHHHHHHHH
Q 003868 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKL 646 (790)
Q Consensus 614 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 646 (790)
.-|-.-.++|-..+.|++|-++-+.
T Consensus 909 --------~d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 909 --------GDFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred --------hhHHHHHHHhhhhhhHHHHHHHHhc
Confidence 4566778999999999999887553
No 68
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.05 E-value=1.1e-06 Score=94.35 Aligned_cols=475 Identities=13% Similarity=0.093 Sum_probs=267.7
Q ss_pred HHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh----hh-------------------hhhh--hHHHHHHH
Q 003868 124 YSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE----EE-------------------KQCM--QMHCTVVK 178 (790)
Q Consensus 124 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~----~~-------------------~~~~--~~~~~~~~ 178 (790)
+...+.+++++.-+..-...+..-+..++..+..++..... ++ .... ....++..
T Consensus 237 w~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~ 316 (799)
T KOG4162|consen 237 WKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRL 316 (799)
T ss_pred hcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence 44556777888888777777777777776666554432111 11 1100 11112222
Q ss_pred hCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHhcccCC
Q 003868 179 SGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE---RDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255 (790)
Q Consensus 179 ~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 255 (790)
..+.-|..+|..|.-+..+| |+++.+-+.|++... .....|+.+-..|...|.-..|+.+++.-
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~---------g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~---- 383 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRC---------GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRES---- 383 (799)
T ss_pred hhhcchHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhh----
Confidence 23445778888888888888 889888888887653 24567888888888888888888888753
Q ss_pred cchhhHHHHhhhhhHHHHHHhCcc--CChhh-HHHHHHHHH-ccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHH
Q 003868 256 GVAWNALISGYVHRELKMLMLRIQ--LDEFT-YTSVISACA-NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331 (790)
Q Consensus 256 ~~~~~~li~~~~~~~~~m~~~~~~--p~~~t-~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 331 (790)
.+.. |+..+ +-..-..|. +.+..+++......++.......-......+-.+.-+|
T Consensus 384 --------------------~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y 443 (799)
T KOG4162|consen 384 --------------------LKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAY 443 (799)
T ss_pred --------------------cccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Confidence 2333 43333 333333343 44666666666555554111111122233444444444
Q ss_pred HHCC-----------CHHHHHHHHhhCCC-----CChhHHHHHHHHHHHcCCHHHHHHHHHHhcc----CChhHHHHHHH
Q 003868 332 WKCG-----------KVNEARDIFNQMPE-----RDLVSWNAILSAYVSAGLIDEAKSLFEAMRE----RNLLSWTVMIS 391 (790)
Q Consensus 332 ~~~g-----------~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~ 391 (790)
...- ...++.+.+++..+ |++.-| +.--|+..++.+.|.....+..+ .+...|..+.-
T Consensus 444 ~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLAL 521 (799)
T KOG4162|consen 444 GFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLAL 521 (799)
T ss_pred HhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 3321 12234444444322 222222 22235555666666655555433 24456666666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcCCHH
Q 003868 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG-YDSSLSAGNALITMYARCGVVE 470 (790)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~ 470 (790)
.+...+++.+|+.+.+..... ..-|......-+..-...++.+++......+...- -.+. ....|+-.
T Consensus 522 vlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~----------~q~~~~~g 590 (799)
T KOG4162|consen 522 VLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYG----------VQQTLDEG 590 (799)
T ss_pred HHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhh----------Hhhhhhhh
Confidence 666666666666666655443 11111111122222223455555544444433210 0000 00111122
Q ss_pred HHHHHHhcCC----C-CCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--------hHHHHHHHHHccCCHH
Q 003868 471 AANCVFNTMP----N-VDS-VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI--------TFLTVLSACNHAGLVK 536 (790)
Q Consensus 471 ~A~~~~~~~~----~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------t~~~ll~a~~~~g~~~ 536 (790)
...+.+..+. + .|. .++..+ .+... -+...+..-.. |...-+.|... .|......+...+..+
T Consensus 591 ~~~~lk~~l~la~~q~~~a~s~sr~l-s~l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~ 667 (799)
T KOG4162|consen 591 KLLRLKAGLHLALSQPTDAISTSRYL-SSLVA-SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDD 667 (799)
T ss_pred hhhhhhcccccCcccccccchhhHHH-HHHHH-hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCch
Confidence 2233333221 0 121 122222 11111 11111100000 22222333332 3445556778889999
Q ss_pred HHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHHHH--HHHH
Q 003868 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS-APIWEALLAGCRIHGNIDLGIQ--AAEQ 612 (790)
Q Consensus 537 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~ 612 (790)
+|...+.+..+ -.+.....|......+...|.++||.+.|... -+.|+ +.+..++...+.+.|+...|.. ++..
T Consensus 668 ~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~d 745 (799)
T KOG4162|consen 668 EARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSD 745 (799)
T ss_pred HHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHH
Confidence 99988888765 23445667777778899999999999988765 56664 5688899999999999888888 9999
Q ss_pred HHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 613 LFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 613 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+++.+|.++.+|..|+.++.+.|+.++|.+.|.....
T Consensus 746 alr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 746 ALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998865
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=4.6e-06 Score=86.86 Aligned_cols=277 Identities=14% Similarity=0.162 Sum_probs=163.6
Q ss_pred HHHHHcCCHHHHHHHHHHhc--------cCC-----h-----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003868 360 SAYVSAGLIDEAKSLFEAMR--------ERN-----L-----LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421 (790)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~m~--------~~~-----~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 421 (790)
-.+...|++.+|+++++... +.| . ..--.+.-.+...|+..+|..+|...++.. .+|....
T Consensus 183 c~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~ 261 (652)
T KOG2376|consen 183 CILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSL 261 (652)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHH
Confidence 34566777777777777662 111 1 122334455667788888888888887764 3444222
Q ss_pred HHH---HHHHHccCChHH--HHHHH------------HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-
Q 003868 422 AGA---ITSCAGLGALEN--GRQLH------------AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD- 483 (790)
Q Consensus 422 ~~l---l~~~~~~g~~~~--a~~i~------------~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~- 483 (790)
... |.+...-.++-. ....+ ..+.. ........-+.++.+|. +..+.+.+.-...+...
T Consensus 262 Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~-~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p 338 (652)
T KOG2376|consen 262 AVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSK-KQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSP 338 (652)
T ss_pred HHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCc
Confidence 221 112222211111 11111 11111 11112233355666665 45566777777766532
Q ss_pred HhHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHccCCHHHHHHHHH--------HcccCCCC
Q 003868 484 SVSWNAMIAALG--QHGNGARAIELYEQMLKEGILPDR--ITFLTVLSACNHAGLVKEGRRYFE--------TMHGPYGI 551 (790)
Q Consensus 484 ~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~--------~~~~~~~~ 551 (790)
...+.+++.... +...+.+|.+++...-+. .|.. ......+......|+++.|.+++. .+.+. +.
T Consensus 339 ~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~ 415 (652)
T KOG2376|consen 339 ESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KH 415 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-cc
Confidence 334445544432 233577888888877763 4555 344445556678999999999998 44432 33
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc
Q 003868 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSL--------PFKPSA-PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622 (790)
Q Consensus 552 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 622 (790)
.+.+...++.++.+.++-+-|..++.+. ...+.. .+|.-+...-.++|+.++|...++++++.+|++..
T Consensus 416 --~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~ 493 (652)
T KOG2376|consen 416 --LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTD 493 (652)
T ss_pred --ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHH
Confidence 3455677888999988877776666543 222222 23444444446789999999999999999999999
Q ss_pred chHhhHHHHHhcCChhHHHHHHHH
Q 003868 623 TYVLLSNMYANLGRWDDAARVRKL 646 (790)
Q Consensus 623 ~~~~l~~~~~~~g~~~~a~~~~~~ 646 (790)
....+..+|+... .+.|..+-+.
T Consensus 494 ~l~~lV~a~~~~d-~eka~~l~k~ 516 (652)
T KOG2376|consen 494 LLVQLVTAYARLD-PEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHhcC-HHHHHHHhhc
Confidence 9999999998764 4666655443
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.03 E-value=6.8e-08 Score=95.71 Aligned_cols=199 Identities=15% Similarity=0.153 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003868 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463 (790)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 463 (790)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+....+.. +
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~------------- 96 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-P------------- 96 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C-------------
Confidence 345555566666666666666666555432 1223333444444444445554444444444332 1
Q ss_pred HhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCCHHHHHHHH
Q 003868 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD-RITFLTVLSACNHAGLVKEGRRYF 542 (790)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 542 (790)
.+...+..+...+...|++++|.+.|++.......|. ...+..+..++...|++++|...+
T Consensus 97 ------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 97 ------------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred ------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2334455555556666666666666666655322222 234445555666667777777777
Q ss_pred HHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 003868 543 ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PF-KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617 (790)
Q Consensus 543 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 617 (790)
....+. .+.+...+..+...+...|++++|.+.+++. .. +.+...+..+...+...|+.+.|....+.+....
T Consensus 159 ~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 159 TRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 666542 2233455666667777777777777766654 11 2244555556666667777777777766665543
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=6.9e-09 Score=99.25 Aligned_cols=225 Identities=12% Similarity=0.072 Sum_probs=127.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 003868 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467 (790)
Q Consensus 388 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g 467 (790)
.+.++|.+.|.+.+|.+.|+.-+.. .|-..||..+-++|.+....+.|..++.+-.+. ++.++....-....+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~---- 300 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH---- 300 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH----
Confidence 3444555555555555555554443 333344444444444444444444444443332 122222222233333
Q ss_pred CHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcc
Q 003868 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMH 546 (790)
Q Consensus 468 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 546 (790)
-..++.++|.++|++..+ ..|+. ....++...|...++++-|+.+++.+.
T Consensus 301 ---------------------------eam~~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiL 351 (478)
T KOG1129|consen 301 ---------------------------EAMEQQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRYYRRIL 351 (478)
T ss_pred ---------------------------HHHHhHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHHHHHHH
Confidence 333444444444444444 22222 233333334444444555555554444
Q ss_pred cCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 003868 547 GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL---PFKPS--APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 547 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
+- |+ .+.+.|+.+.-.+.-.+++|-++.-|++. ..+|+ ..+|-.|.......||+..|.+.|+-++..+|++.
T Consensus 352 qm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 352 QM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred Hh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 32 32 23444444444444455555555444443 11232 35788887777888999999999999999999999
Q ss_pred cchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 622 GTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
.+++.|+.+-.+.|++++|..++...++.
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 99999999999999999999999988763
No 72
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=9.8e-05 Score=81.48 Aligned_cols=143 Identities=17% Similarity=0.246 Sum_probs=114.2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHH
Q 003868 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562 (790)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 562 (790)
.+..|..+..+-.+.|...+|++-|-+ .-|+..|..++.++++.|.+++-..++...+++ .-+|.++ +.|+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHH
Confidence 456788999999999999999887743 235678999999999999999999999988876 6666665 4789
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHH
Q 003868 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAAR 642 (790)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 642 (790)
-+|++.+++.|-++++. -|+..-...+..-|...|.++.|.-+|.. ...|..|+..+...|.+..|..
T Consensus 1174 ~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888773 46777777888889999999988887764 3567778888888888777765
Q ss_pred HHHH
Q 003868 643 VRKL 646 (790)
Q Consensus 643 ~~~~ 646 (790)
.-++
T Consensus 1242 ~aRK 1245 (1666)
T KOG0985|consen 1242 AARK 1245 (1666)
T ss_pred Hhhh
Confidence 4443
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.01 E-value=3e-08 Score=101.42 Aligned_cols=211 Identities=19% Similarity=0.143 Sum_probs=145.3
Q ss_pred CChHHHHHHHHHHHHhC-CCC--chhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHH
Q 003868 432 GALENGRQLHAQLVHSG-YDS--SLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIE 505 (790)
Q Consensus 432 g~~~~a~~i~~~~~~~g-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 505 (790)
+..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34556666666666432 222 235577778888899999999998887754 367889999999999999999999
Q ss_pred HHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--C
Q 003868 506 LYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL--P 582 (790)
Q Consensus 506 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~ 582 (790)
.|++..+ +.|+. .++..+..++...|++++|.+.|+...+. .|+..........+...+++++|.+.+++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999988 67765 56777778888899999999999988753 444322222223345677899999988654 2
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-------hcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCC
Q 003868 583 FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF-------QLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651 (790)
Q Consensus 583 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 651 (790)
..|+. |.. .......|+...+ ..++.+. ++.|+.+.+|..|+.+|...|++++|...|++..+..
T Consensus 195 ~~~~~--~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQ--WGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccc--cHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 23332 321 1222234444333 2333333 4556677889999999999999999999999887643
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=98.99 E-value=3.9e-08 Score=110.10 Aligned_cols=210 Identities=12% Similarity=-0.004 Sum_probs=163.0
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh---------cCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCC
Q 003868 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYAR---------CGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGN 499 (790)
Q Consensus 432 g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~---------~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 499 (790)
+++++|.+.++++++.. +.+...+..+..+|.. .+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 34678999999988764 3345566666655542 3458899999998765 367788888889999999
Q ss_pred hHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCCh-hHHHHHHHHHHhcCChHHHHHH
Q 003868 500 GARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE-DHYARFIDLLCRAGKFSEAKDV 577 (790)
Q Consensus 500 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~ 577 (790)
+++|+..|++..+ ..|+. ..+..+..++...|++++|...++.+.+. .|+. ..+..+...+...|++++|.+.
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999998 56775 46777888999999999999999999853 4542 3333445557778999999999
Q ss_pred HHhCC--CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 578 IDSLP--FKPS-APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 578 ~~~~~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+++.- ..|+ +..+..+...+...|+.++|...++++....|.+......+...|...| ++|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 98762 2354 4456777778889999999999999998888888777888888888888 588887777754
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.2e-05 Score=84.00 Aligned_cols=125 Identities=10% Similarity=0.060 Sum_probs=94.9
Q ss_pred hHHHHHHhhcCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCCCChHHHHH--HHHHH
Q 003868 14 NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTT--LIAAY 91 (790)
Q Consensus 14 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--li~~~ 91 (790)
..+.+-|.....++. .+.|.+.-..++..+ +-|...+.+=+.++.+.+.+++|.++.+.-... .+++. +=.+|
T Consensus 13 ~~l~t~ln~~~~~~e--~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAY 87 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGE--YEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAY 87 (652)
T ss_pred HHHHHHHHHhccchH--HHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHH
Confidence 455555677777888 999999999998877 556777777888899999999999776654421 12222 46677
Q ss_pred h--cCCChHHHHHHHhhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 003868 92 S--ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145 (790)
Q Consensus 92 ~--~~g~~~~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~ 145 (790)
| +.+..++|...++.... -+..+-..-...+.+.|++++|+++|+.+.+++.
T Consensus 88 c~Yrlnk~Dealk~~~~~~~--~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLDR--LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred HHHHcccHHHHHHHHhcccc--cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 6 67899999999996554 4444666667788899999999999999987653
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.92 E-value=7.7e-08 Score=102.49 Aligned_cols=202 Identities=17% Similarity=0.220 Sum_probs=110.7
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHhcCC-CCC-CCCh-hHHHHHHHHHHHCCCHHHHHHHHhhCCC-------C-
Q 003868 282 EFTYTSVISACANSGLFRLGKQVHAYLLRTEAK-PTP-EFSL-PVNNALVTLYWKCGKVNEARDIFNQMPE-------R- 350 (790)
Q Consensus 282 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~-~~~~-~~~~~li~~~~~~g~~~~A~~~f~~m~~-------~- 350 (790)
..|...+...|...|+++.|..+++..++.-.+ .|. .+.+ ...+.+...|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 356666888899999999999999988763110 111 1111 1223355566777777777766666542 1
Q ss_pred ---ChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHH-HHHHHH
Q 003868 351 ---DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF-KPCDY-AFAGAI 425 (790)
Q Consensus 351 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~-t~~~ll 425 (790)
-..+++.|...|.+.|++++|... .+.|++++++ ..|. .|... -++.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~------------------------~e~Al~I~~~--~~~~~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEY------------------------CERALEIYEK--LLGASHPEVAAQLSELA 332 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHH------------------------HHHHHHHHHH--hhccChHHHHHHHHHHH
Confidence 123455555566666666666665 3444555544 1122 22222 345556
Q ss_pred HHHHccCChHHHHHHHHHHHHh---CCCC----chhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----------CHhHH
Q 003868 426 TSCAGLGALENGRQLHAQLVHS---GYDS----SLSAGNALITMYARCGVVEAANCVFNTMPNV-----------DSVSW 487 (790)
Q Consensus 426 ~~~~~~g~~~~a~~i~~~~~~~---g~~~----~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~ 487 (790)
..|...+.+++|..+++...+. -+.+ -..+++.|...|.+.|++++|+++|+++... ....+
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 6677777777777777755442 1111 1234555666666666666666655544320 12234
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 003868 488 NAMIAALGQHGNGARAIELYEQ 509 (790)
Q Consensus 488 ~~li~~~~~~g~~~~A~~~~~~ 509 (790)
+.|...|.+.+++.+|.++|.+
T Consensus 413 ~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 413 NQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHHHHHHHHhcccchHHHHHHH
Confidence 4455555555555555555544
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.91 E-value=7.8e-08 Score=88.29 Aligned_cols=163 Identities=17% Similarity=0.180 Sum_probs=138.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHH
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 564 (790)
....|.-+|.+.|+...|..-+++.++ ..|+. .++..+...|.+.|..+.|.+.|+...+ --+-+..+.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHH
Confidence 344567789999999999999999998 56766 4788888889999999999999999885 234456788999999
Q ss_pred HHhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHH
Q 003868 565 LCRAGKFSEAKDVIDSLPFKPS----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA 640 (790)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 640 (790)
+|..|++++|...|++.-..|+ ..+|..+.....+.|+.+.|...+++.++.+|+++.+...+.....+.|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999998733332 347888887778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 003868 641 ARVRKLMRDRGV 652 (790)
Q Consensus 641 ~~~~~~m~~~g~ 652 (790)
..+++....+|.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999999876655
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.90 E-value=3.7e-07 Score=93.39 Aligned_cols=215 Identities=13% Similarity=-0.028 Sum_probs=144.6
Q ss_pred hHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 003868 399 GEEGLKLFSQMRLEG-FKPC--DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475 (790)
Q Consensus 399 ~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 475 (790)
.+.++.-+.++.... ..|+ ...|......+...|+.++|...+..+++.. +.+...|+.+...|...|++++|...
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 566666666666432 2222 2345555556677777777777777777654 44567888888888889999999888
Q ss_pred HhcCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCC
Q 003868 476 FNTMPN--V-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552 (790)
Q Consensus 476 ~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 552 (790)
|+...+ | +..+|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...|..... ...
T Consensus 121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~ 196 (296)
T PRK11189 121 FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLD 196 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCC
Confidence 887754 3 467788888888999999999999999988 567664322222334556789999999976553 233
Q ss_pred CChhHHHHHHHHHHhcCChHHH--HHHHHh-CCC----CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 003868 553 PGEDHYARFIDLLCRAGKFSEA--KDVIDS-LPF----KP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 553 p~~~~~~~li~~~~~~g~~~~A--~~~~~~-~~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
|+... ..++. ...|++.++ .+.+.+ ... .| ....|..+...+...|++++|+..|+++++.+|++.
T Consensus 197 ~~~~~-~~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 197 KEQWG-WNIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred ccccH-HHHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 33222 22333 334555443 322322 111 12 235789999999999999999999999999998653
No 79
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=0.0001 Score=81.41 Aligned_cols=451 Identities=13% Similarity=0.136 Sum_probs=252.9
Q ss_pred chHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCC---------------CChHHHHHHHHHHhcCC
Q 003868 31 SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ---------------PDIVARTTLIAAYSASD 95 (790)
Q Consensus 31 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---------------~~~~~~~~li~~~~~~g 95 (790)
+.....-+..|...++.-+..+.-.+..-|...-..+.-.++|+.... .|+.+.-..|.+-|+.|
T Consensus 659 ve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~ 738 (1666)
T KOG0985|consen 659 VEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTG 738 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhc
Confidence 556667777777777777777777777777777777777888887753 44445556788888888
Q ss_pred ChHHHHHHHhhCCC-----------------C------------CCCcchH--H----HHHHHHHhCCCchHHHHHHHHh
Q 003868 96 NVKLAREMFNKTPL-----------------K------------MRDTVFY--N----AMITAYSHNSNGHAAIELFRDM 140 (790)
Q Consensus 96 ~~~~A~~~~~~~~~-----------------~------------~~~~~~~--n----~li~~~~~~g~~~~A~~~~~~m 140 (790)
.+.+..++-++..- . .+|.+.| . ..|..|++.=++...-.+.-.+
T Consensus 739 QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~L 818 (1666)
T KOG0985|consen 739 QIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGAL 818 (1666)
T ss_pred cHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhh
Confidence 87777666553211 0 1122221 1 2455555554433333332222
Q ss_pred hh---------------CCCCCChhhHHHHHHHHhcchh-hhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCcc
Q 003868 141 RR---------------DDVKPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204 (790)
Q Consensus 141 ~~---------------~g~~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~ 204 (790)
.. .|.-| -..|+.-+-+..+ .... ...+..+..|. .|+.++|+|...|...-..|..
T Consensus 819 LD~dC~E~~ik~Li~~v~gq~~----~deLv~EvEkRNRLklLl--p~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~ 891 (1666)
T KOG0985|consen 819 LDVDCSEDFIKNLILSVRGQFP----VDELVEEVEKRNRLKLLL--PWLESLIQEGS-QDPATHNALAKIYIDSNNNPER 891 (1666)
T ss_pred hcCCCcHHHHHHHHHHHhccCC----hHHHHHHHHhhhhHHHHH--HHHHHHHhccC-cchHHHhhhhheeecCCCChHH
Confidence 21 23222 2344444444443 3333 66666677775 5778899998888776322222
Q ss_pred CCCCC-HHHHHHHHccCCCCCe----eeH------HHHHHHHHhCCChh-HHHHHHHhcccCCcchhhHHHHhhhhhHH-
Q 003868 205 SSRSL-MGAARRVFDEMPERDE----LSW------TTMMTGYVKNDYLD-AAREFLDGMSENVGVAWNALISGYVHREL- 271 (790)
Q Consensus 205 ~~~g~-~~~A~~~f~~~~~~~~----~~~------~~li~~~~~~g~~~-~A~~l~~~m~~~~~~~~~~li~~~~~~~~- 271 (790)
+.+.. +-+..-+=+-...+|+ ++| ..+|..+-.+..+. .|.-+.+++ |..-|+.++.----...
T Consensus 892 fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~---D~~LW~~VL~e~n~~rRq 968 (1666)
T KOG0985|consen 892 FLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERS---DPDLWAKVLNEENPYRRQ 968 (1666)
T ss_pred hcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhcc---ChHHHHHHHhccChHHHH
Confidence 11111 0000000000011111 111 22333333333222 122222222 33444444421100000
Q ss_pred ---HHHHhCcc--CChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhh
Q 003868 272 ---KMLMLRIQ--LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346 (790)
Q Consensus 272 ---~m~~~~~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 346 (790)
+....+++ -|+.-.+..+.++...+-..+-.++++.++-.. +.+.-+...-|.|+-...|. +.....+..++
T Consensus 969 LiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~--S~Fse~~nLQnLLiLtAika-d~trVm~YI~r 1045 (1666)
T KOG0985|consen 969 LIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDN--SVFSENRNLQNLLILTAIKA-DRTRVMEYINR 1045 (1666)
T ss_pred HHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCC--cccccchhhhhhHHHHHhhc-ChHHHHHHHHH
Confidence 11222322 355667777888888888888888888877421 11222344445555444443 33455555565
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhcc-------------------------CChhHHHHHHHHHHhcCChHH
Q 003868 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE-------------------------RNLLSWTVMISGLAQNGYGEE 401 (790)
Q Consensus 347 m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------------------------~~~~~~~~li~~~~~~g~~~~ 401 (790)
+..-|.. .+......++-+++|..+|++... ..+..|..+..+-.+.|...+
T Consensus 1046 LdnyDa~---~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1046 LDNYDAP---DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred hccCCch---hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHH
Confidence 5542221 122334455666777777665421 234579999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 003868 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481 (790)
Q Consensus 402 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 481 (790)
|++-|-+. -|...|.-++..+.+.|.+++-..++..+++..-+|.+ -+.||-+|++.+++.+-+++.. .
T Consensus 1123 AieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~---g 1191 (1666)
T KOG0985|consen 1123 AIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA---G 1191 (1666)
T ss_pred HHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc---C
Confidence 99877533 35678999999999999999999999888888766654 4589999999999888776653 3
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHH
Q 003868 482 VDSVSWNAMIAALGQHGNGARAIELYE 508 (790)
Q Consensus 482 ~~~~~~~~li~~~~~~g~~~~A~~~~~ 508 (790)
||+.-...+..-|...|.++.|.-+|.
T Consensus 1192 pN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1192 PNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred CCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 444444455555555555555544443
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.79 E-value=6.6e-05 Score=81.46 Aligned_cols=249 Identities=11% Similarity=0.098 Sum_probs=129.4
Q ss_pred HHHHhcCChhHHHHHhhhCCC--CChHH-HHHHHHHHhcCCChHHHHHHHhhCCCCCCCcchH-HHHHHHHHhC-----C
Q 003868 58 DIYCKSLKLVYARTLFDEIPQ--PDIVA-RTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFY-NAMITAYSHN-----S 128 (790)
Q Consensus 58 ~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-n~li~~~~~~-----g 128 (790)
..+...|+++.|.+.++.-.. .|... .......+.+.|+.++|..++..+....|+-..| ..+..+..-. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence 445677888888888877554 55444 4555666778888888888888877654444444 4444444222 2
Q ss_pred CchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh-hhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCC
Q 003868 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSR 207 (790)
Q Consensus 129 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~ 207 (790)
+.+...++|+++...- |.......+.-.+.. |+ -...+........+.|++ .+++.|-..|...
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~-g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~--------- 156 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLE-GDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDP--------- 156 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCC-HHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcCh---------
Confidence 4566777888776542 433333222222221 22 111122444455555543 3445555555433
Q ss_pred CCHHHHHHHHccCC------------------CCCeeeH--HHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhh
Q 003868 208 SLMGAARRVFDEMP------------------ERDELSW--TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV 267 (790)
Q Consensus 208 g~~~~A~~~f~~~~------------------~~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~ 267 (790)
...+-...++..+. .|....| .-+...|-..|++++|++.+++-
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~a---------------- 220 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKA---------------- 220 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH----------------
Confidence 33333333333221 1122223 33344455566666666666643
Q ss_pred hhHHHHHHhCccCC-hhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhh
Q 003868 268 HRELKMLMLRIQLD-EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346 (790)
Q Consensus 268 ~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 346 (790)
....|+ +..|..-.+.+-+.|++.+|....+.... .+.. |..+.+-.+..+.++|++++|.+++..
T Consensus 221 --------I~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~----LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~ 287 (517)
T PF12569_consen 221 --------IEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE----LDLA-DRYINSKCAKYLLRAGRIEEAEKTASL 287 (517)
T ss_pred --------HhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----CChh-hHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 222343 33455555555566666666666665554 3322 455555555556666666666655555
Q ss_pred CCCC
Q 003868 347 MPER 350 (790)
Q Consensus 347 m~~~ 350 (790)
...+
T Consensus 288 Ftr~ 291 (517)
T PF12569_consen 288 FTRE 291 (517)
T ss_pred hcCC
Confidence 5443
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=3e-05 Score=75.68 Aligned_cols=129 Identities=16% Similarity=0.064 Sum_probs=82.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHH-HHHHHHH
Q 003868 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA-RFIDLLC 566 (790)
Q Consensus 488 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~ 566 (790)
.++.+.+.-..++++.+-.++....- +.-|..--..+..|.+..|.+.+|.++|-.+... .+ .|..+|. .|...|.
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYI 439 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHH
Confidence 34444555555666666666666553 2333333344667788888888888888776642 22 2344454 4567788
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 003868 567 RAGKFSEAKDVIDSLPFKPSAPIWEA-LLAGCRIHGNIDLGIQAAEQLFQLMPH 619 (790)
Q Consensus 567 ~~g~~~~A~~~~~~~~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~ 619 (790)
++|+.+-|-+++-++.-..+..+... +.+-|.+.+.+--|-++|..+-.++|.
T Consensus 440 ~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 88888888888888764444444433 345678888887777788777777665
No 82
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=2.9e-07 Score=88.42 Aligned_cols=229 Identities=14% Similarity=0.129 Sum_probs=132.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhcc--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHccC
Q 003868 356 NAILSAYVSAGLIDEAKSLFEAMRE--RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA-GAITSCAGLG 432 (790)
Q Consensus 356 ~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g 432 (790)
+.|...|.+.|.+.+|.+.|+...+ +-+.||-.+-+.|.+..++..|+.+|.+-.+. .|-.+||. .....+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 5677888889999999888887765 46778888889999999999999999887763 56666654 3555666677
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003868 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512 (790)
Q Consensus 433 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 512 (790)
+.+.+.++++...+.. +.++....++ ..+|.-.++++-|+.+|+++.+
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAci-------------------------------a~~yfY~~~PE~AlryYRRiLq 352 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACI-------------------------------AVGYFYDNNPEMALRYYRRILQ 352 (478)
T ss_pred hHHHHHHHHHHHHhcC-Cccceeeeee-------------------------------eeccccCCChHHHHHHHHHHHH
Confidence 7778888877777653 2233333333 3344444555555555555555
Q ss_pred cCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHH
Q 003868 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG--EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAP 588 (790)
Q Consensus 513 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 588 (790)
.|+. +..-|..+.-+|...++++-++.-|+..... -..|+ .+.|-.+.....-.|++.-|.+-|+-. ...| ...
T Consensus 353 mG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 353 MGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred hcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 5432 3334444444455555555555544444331 11121 234444444445555555555555443 1112 233
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 003868 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 589 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 620 (790)
.++.|.-.-.+.|+++.|..++..+....|+-
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 45555444455555555555555555555543
No 83
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.77 E-value=7.2e-06 Score=88.80 Aligned_cols=278 Identities=15% Similarity=0.189 Sum_probs=170.4
Q ss_pred HHHHCCCHHHHHHHHhhCCC--CChhH-HHHHHHHHHHcCCHHHHHHHHHHhccCCh--hH-HHHHHHHHHh-----cCC
Q 003868 330 LYWKCGKVNEARDIFNQMPE--RDLVS-WNAILSAYVSAGLIDEAKSLFEAMRERNL--LS-WTVMISGLAQ-----NGY 398 (790)
Q Consensus 330 ~~~~~g~~~~A~~~f~~m~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~-~~~li~~~~~-----~g~ 398 (790)
.+...|++++|++.++.-.. .|..+ .......+.+.|+.++|..++..+.+.|+ .. |..+..+..- ...
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccccc
Confidence 34556666666666655443 23333 33445566666777777777766665443 22 3333333311 123
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 003868 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL-ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477 (790)
Q Consensus 399 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 477 (790)
.+....+|+++...- |.......+.-.+.....+ ..+..++....+.|+++ +++.|-..|....+.+-..+++.
T Consensus 93 ~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 93 VEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred HHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHH
Confidence 456666677665532 3333322222222221122 23445555666666544 45555555654444444444443
Q ss_pred cCC------------------CCCHhHH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHccCCHH
Q 003868 478 TMP------------------NVDSVSW--NAMIAALGQHGNGARAIELYEQMLKEGILPDRI-TFLTVLSACNHAGLVK 536 (790)
Q Consensus 478 ~~~------------------~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~ 536 (790)
... .|....| .-+...|-..|++++|++++++.++ ..|+.+ .|..-...+-+.|+++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHH
Confidence 321 1333344 5567788899999999999999999 578764 6778888999999999
Q ss_pred HHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC---CC--C----HHHHH--HHHHHHHHhCCHHH
Q 003868 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF---KP--S----APIWE--ALLAGCRIHGNIDL 605 (790)
Q Consensus 537 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~p--~----~~~~~--~ll~~~~~~g~~~~ 605 (790)
+|.+.++.... --.-|...=+-.+..+.|+|++++|.+++....- .| | ..+|- ....+|.+.|++..
T Consensus 246 ~Aa~~~~~Ar~--LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 246 EAAEAMDEARE--LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHh--CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999885 2334556666778888999999999999877631 12 1 12443 34677889999999
Q ss_pred HHHHHHHHHhc
Q 003868 606 GIQAAEQLFQL 616 (790)
Q Consensus 606 a~~~~~~~~~~ 616 (790)
|+..+..+.+.
T Consensus 324 ALk~~~~v~k~ 334 (517)
T PF12569_consen 324 ALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHH
Confidence 99988877654
No 84
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=0.00013 Score=78.91 Aligned_cols=379 Identities=12% Similarity=0.058 Sum_probs=178.0
Q ss_pred CcchHHHHHH--HHHhcCChhHHHHHhhhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhCCCC---------CCCc-ch
Q 003868 49 REHIINRLID--IYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLK---------MRDT-VF 116 (790)
Q Consensus 49 ~~~~~~~ll~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~-~~ 116 (790)
|..|-..+++ .|...|+++.|.+-...+... .+|..|.+++.+..+++-|.-.+-.|... ..|. ..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~--~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~ 802 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD--SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED 802 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh--HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch
Confidence 4555555554 455667777777776666552 45777777777777766666666555432 1111 11
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh-hhhhhhhHHHHHHHhCCCCchhHHHHHHHhh
Q 003868 117 YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195 (790)
Q Consensus 117 ~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y 195 (790)
-.-...--.+.|..++|+.+|++-.+.. ..|-+..+ .|. .++. ++-+.--+..+..+-+-|..-+.
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR~D------LlNKlyQs---~g~w~eA~--eiAE~~DRiHLr~Tyy~yA~~Le-- 869 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKRYD------LLNKLYQS---QGMWSEAF--EIAETKDRIHLRNTYYNYAKYLE-- 869 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHH------HHHHHHHh---cccHHHHH--HHHhhccceehhhhHHHHHHHHH--
Confidence 1111112235577777777777665421 12222222 222 2221 11111111111111111111111
Q ss_pred hccCCCCccCCCCCHHHHHHHHccCCC-----------------------CCeeeHHHHHHHHHhCCChhHHHHHHHhcc
Q 003868 196 VKCVSSPFVSSRSLMGAARRVFDEMPE-----------------------RDELSWTTMMTGYVKNDYLDAAREFLDGMS 252 (790)
Q Consensus 196 ~~~~~~~~~~~~g~~~~A~~~f~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 252 (790)
. +++++.|++.|+.-.. +|...|.-...-+-..|+.+.|+.+|...+
T Consensus 870 -a---------r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 870 -A---------RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred -h---------hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 1 1566666666654321 133333333333344577777777776541
Q ss_pred cCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHH
Q 003868 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332 (790)
Q Consensus 253 ~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 332 (790)
-|-++++..+-.|+.++|-++-++- | |....-.|.++|-
T Consensus 940 -------------------------------D~fs~VrI~C~qGk~~kAa~iA~es-------g---d~AAcYhlaR~YE 978 (1416)
T KOG3617|consen 940 -------------------------------DYFSMVRIKCIQGKTDKAARIAEES-------G---DKAACYHLARMYE 978 (1416)
T ss_pred -------------------------------hhhhheeeEeeccCchHHHHHHHhc-------c---cHHHHHHHHHHhh
Confidence 2555666666677777777665442 2 4556666777788
Q ss_pred HCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccC-Chh-----------HHHHHHHHHHhcCChH
Q 003868 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER-NLL-----------SWTVMISGLAQNGYGE 400 (790)
Q Consensus 333 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~-----------~~~~li~~~~~~g~~~ 400 (790)
..|++.+|..+|-+.. ++...|+.+-.++ +++-+.-+..|..+ |.+ -...-+-.|-+.|.+.
T Consensus 979 n~g~v~~Av~FfTrAq-----afsnAIRlcKEnd-~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~ 1052 (1416)
T KOG3617|consen 979 NDGDVVKAVKFFTRAQ-----AFSNAIRLCKEND-MKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIG 1052 (1416)
T ss_pred hhHHHHHHHHHHHHHH-----HHHHHHHHHHhcC-HHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchH
Confidence 8888888887777643 3444444333222 22222222222111 111 0112233455666666
Q ss_pred HHHHHHHH--------HHHcCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 003868 401 EGLKLFSQ--------MRLEGFK--PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470 (790)
Q Consensus 401 ~A~~~~~~--------m~~~g~~--p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 470 (790)
+|+++--+ ++...+. .|...++....-+....++++|..++....+. .--+. .|+..++.
T Consensus 1053 kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~---------~~Alq-lC~~~nv~ 1122 (1416)
T KOG3617|consen 1053 KALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF---------SGALQ-LCKNRNVR 1122 (1416)
T ss_pred HHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHH-HHhcCCCc
Confidence 66654221 1122222 23444444455555556666666665544431 00111 12222222
Q ss_pred HHHHHHhcCCC-----CCH----hHHHHHHHHHHhcCChHHHHHHHHH
Q 003868 471 AANCVFNTMPN-----VDS----VSWNAMIAALGQHGNGARAIELYEQ 509 (790)
Q Consensus 471 ~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~ 509 (790)
-.+++-+.|.. ++. .....+...|.++|.+..|-+-|.+
T Consensus 1123 vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1123 VTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred hhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 22333333321 222 2344556677778888777666544
No 85
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=2.1e-07 Score=96.58 Aligned_cols=215 Identities=15% Similarity=0.139 Sum_probs=163.0
Q ss_pred HccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHH
Q 003868 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIE 505 (790)
Q Consensus 429 ~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 505 (790)
.+.|++.+|.-.|+..++.. +.+...|.-|...-+..++-..|+..+++..+ .|....-+|.-.|...|.-..|++
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 34566666666666666653 44566677777777777776777777776654 355666677778888888889999
Q ss_pred HHHHHHHcCCCCChhhHHHHH-----------HHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHH
Q 003868 506 LYEQMLKEGILPDRITFLTVL-----------SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574 (790)
Q Consensus 506 ~~~~m~~~g~~p~~~t~~~ll-----------~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 574 (790)
.++.-+.. +|... .+. ....+...+.+..++|-.+....+..+|.+++.+|.-+|--.|.+++|
T Consensus 375 ~L~~Wi~~--~p~y~---~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 375 MLDKWIRN--KPKYV---HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHh--Cccch---hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 88887653 22110 000 122233345556666766665446668899999999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 575 KDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 575 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.+-|+.. ..+| |..+||-|...+....+.++|+..|++++++.|.-..+...|+..|...|.++||.+.+-....
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999986 5677 6679999999999999999999999999999999999999999999999999999998887754
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.74 E-value=2.8e-06 Score=78.29 Aligned_cols=193 Identities=15% Similarity=0.112 Sum_probs=113.0
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChH
Q 003868 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGA 501 (790)
Q Consensus 425 l~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 501 (790)
.-.|...|+...|+.-++++++.. +.+..++..+...|.+.|+.+.|.+.|+...+ .+....|....-+|..|+++
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~ 120 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPE 120 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChH
Confidence 334455555555555555555542 33444555666666666666666666665442 34455566666666777777
Q ss_pred HHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 003868 502 RAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580 (790)
Q Consensus 502 ~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 580 (790)
+|...|++....-.-|.. .||..+.-+..+.|+.+.|..+|++..+. .+-.......+.....+.|++..|..+++.
T Consensus 121 eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 121 EAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred HHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 777777776664333322 36666666666677777777777766642 222334555666666677777777766665
Q ss_pred C--CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 003868 581 L--PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 581 ~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 620 (790)
. ...++..+.--.+..-...||.+.+-+.-.++....|..
T Consensus 199 ~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 199 YQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 5 223455544445555566677766666666666666655
No 87
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=4.9e-05 Score=82.00 Aligned_cols=245 Identities=18% Similarity=0.141 Sum_probs=158.6
Q ss_pred CCchhHHHHHHH--hhhccCCCCccCCCCCHHHHHHHHccCCCCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchh
Q 003868 182 GLFTSVLNALIS--VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259 (790)
Q Consensus 182 ~~~~~~~~~li~--~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~ 259 (790)
.-|..+-.++++ .|.-- |++|.|.+-.+-+. +.+.|..|.+.+++..+++-|.-.+-.|..-
T Consensus 723 ~Cd~~TRkaml~FSfyvti---------G~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~a----- 786 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTI---------GSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNA----- 786 (1416)
T ss_pred ccCHHHHHhhhceeEEEEe---------ccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhh-----
Confidence 345666666664 45555 99999988877765 5678999999999999999999999988431
Q ss_pred hHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHH
Q 003868 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339 (790)
Q Consensus 260 ~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 339 (790)
+.....++..-.|+ .+=.-+.-.....|-+++|+.++.+-.+ |..|=..|-..|.+++
T Consensus 787 --------RgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-------------~DLlNKlyQs~g~w~e 844 (1416)
T KOG3617|consen 787 --------RGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-------------YDLLNKLYQSQGMWSE 844 (1416)
T ss_pred --------hhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-------------HHHHHHHHHhcccHHH
Confidence 11111122222232 2222333334577899999999988876 3344556888999999
Q ss_pred HHHHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhcc-----------------------CChhHHHHHHHHHHh
Q 003868 340 ARDIFNQMPER-DLVSWNAILSAYVSAGLIDEAKSLFEAMRE-----------------------RNLLSWTVMISGLAQ 395 (790)
Q Consensus 340 A~~~f~~m~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----------------------~~~~~~~~li~~~~~ 395 (790)
|.++-+.-..- =..||.....-+-..++.+.|++.|++... +|...|.-....+-.
T Consensus 845 A~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES 924 (1416)
T KOG3617|consen 845 AFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLES 924 (1416)
T ss_pred HHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhc
Confidence 99887653321 122566666666778889999888877642 233445555555556
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 003868 396 NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475 (790)
Q Consensus 396 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 475 (790)
.|+.+.|+.+|..... |-++++..|-+|+.++|-++-++ .-|......|..+|...|++.+|...
T Consensus 925 ~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~F 989 (1416)
T KOG3617|consen 925 VGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKF 989 (1416)
T ss_pred ccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHH
Confidence 6777777777665543 34455555666777776666544 23445555677777777777777777
Q ss_pred HhcC
Q 003868 476 FNTM 479 (790)
Q Consensus 476 ~~~~ 479 (790)
|.+.
T Consensus 990 fTrA 993 (1416)
T KOG3617|consen 990 FTRA 993 (1416)
T ss_pred HHHH
Confidence 6654
No 88
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=0.00023 Score=71.22 Aligned_cols=260 Identities=11% Similarity=0.064 Sum_probs=134.6
Q ss_pred ccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhH
Q 003868 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVS 354 (790)
Q Consensus 278 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~ 354 (790)
++-|......+.+.+...|+.+++...|+.... .++. ++.......-.+.+.|+.+.-..+...+.. .+...
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~----~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~ 302 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC----ANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASH 302 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh----CChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhh
Confidence 444555566677777777777777777777654 2211 111111222223455666655555444432 33445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 003868 355 WNAILSAYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431 (790)
Q Consensus 355 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 431 (790)
|-.-...+....+++.|+.+-++..+. ++..|-.-...+.+.|+.++|.-.|+..+... +-+-..|..++.+|...
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhh
Confidence 555556666677777888777777653 34455555567777888888888887776531 23445677777777777
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHH-HHHHh-cCCHHHHHHHHhcCCC--CC-HhHHHHHHHHHHhcCChHHHHHH
Q 003868 432 GALENGRQLHAQLVHSGYDSSLSAGNALI-TMYAR-CGVVEAANCVFNTMPN--VD-SVSWNAMIAALGQHGNGARAIEL 506 (790)
Q Consensus 432 g~~~~a~~i~~~~~~~g~~~~~~~~~~li-~~y~~-~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~ 506 (790)
|.+.+|.-.-....+. ++.+..+.+.+. ..+.- ..--++|.++++.... |+ ....+.+...+...|..++++.+
T Consensus 382 ~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 382 KRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred chHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 7766665554444332 122222222211 11111 1112344444444332 21 12233344444445555555555
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcc
Q 003868 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546 (790)
Q Consensus 507 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 546 (790)
+++-.. ..||..--+.|.+.+...+.+++|.+.|....
T Consensus 461 Le~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 461 LEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 555444 34555544555555555555555555554444
No 89
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=0.00013 Score=71.36 Aligned_cols=393 Identities=12% Similarity=0.085 Sum_probs=233.4
Q ss_pred CCHHHHHHHHccCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhh
Q 003868 208 SLMGAARRVFDEMPE---RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFT 284 (790)
Q Consensus 208 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t 284 (790)
|++++|..++.-+.+ ++...|-.|.-.+.-.|.+.+|..+-..-+ -++..
T Consensus 71 gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~---------------------------k~pL~ 123 (557)
T KOG3785|consen 71 GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAP---------------------------KTPLC 123 (557)
T ss_pred ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCC---------------------------CChHH
Confidence 888888888875543 356667777777777788888887766541 12333
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--CChhHHHH-HHHH
Q 003868 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--RDLVSWNA-ILSA 361 (790)
Q Consensus 285 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~~ 361 (790)
...++...-+.++-++-..++..+.. ...---+|..+....-.+.+|++++.++.. |+-...|. |.-.
T Consensus 124 ~RLlfhlahklndEk~~~~fh~~LqD---------~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALC 194 (557)
T KOG3785|consen 124 IRLLFHLAHKLNDEKRILTFHSSLQD---------TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALC 194 (557)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhh---------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHH
Confidence 44455555677777777777766654 112233445554455567888888888764 34344443 3345
Q ss_pred HHHcCCHHHHHHHHHHhcc--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-----cCC
Q 003868 362 YVSAGLIDEAKSLFEAMRE--R-NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG-----LGA 433 (790)
Q Consensus 362 ~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-----~g~ 433 (790)
|.+..-++-+.+++..-.. | +.++-|....-..+.=....|..-..++...+-.. ..+ +.-.++ -.+
T Consensus 195 yyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--~~f---~~~l~rHNLVvFrn 269 (557)
T KOG3785|consen 195 YYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--YPF---IEYLCRHNLVVFRN 269 (557)
T ss_pred HHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--chh---HHHHHHcCeEEEeC
Confidence 6666666666666554433 2 23445544444444322333333334443332111 111 111111 123
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC-------ChHHHHHH
Q 003868 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG-------NGARAIEL 506 (790)
Q Consensus 434 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~ 506 (790)
-+.|.+++--+.+. -|. .--.|+-.|.+.+++.+|..+.++....++.-|-.-.-.++..| ...-|.+.
T Consensus 270 gEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqf 345 (557)
T KOG3785|consen 270 GEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQF 345 (557)
T ss_pred CccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Confidence 35566655555443 222 23356777999999999999999887655544433233333333 24445555
Q ss_pred HHHHHHcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CC
Q 003868 507 YEQMLKEGILPDRI-TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP-FK 584 (790)
Q Consensus 507 ~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~ 584 (790)
|+-.-+.+..-|.+ .-.++.+++.-..++++.+.+++.+.. |-...|...| .+..+++..|.+.+|+++|-... .+
T Consensus 346 fqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ 423 (557)
T KOG3785|consen 346 FQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPE 423 (557)
T ss_pred HHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChh
Confidence 55444555544443 344555666667789999999998876 3333444444 57889999999999999998773 12
Q ss_pred -CCHHHHHHHHHHH-HHhCCHHHHHHHHHHHHhcC-CCCC-cchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 585 -PSAPIWEALLAGC-RIHGNIDLGIQAAEQLFQLM-PHHA-GTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 585 -p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
.|..+|.+++.-| ...+..+.|..++ +..+ |.+. .....+++-|.+++.+--|.+.|..+...
T Consensus 424 ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 424 IKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred hhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 4667787777666 5557777766554 4443 3222 23446678899999999899999988763
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.70 E-value=1.4e-05 Score=77.63 Aligned_cols=289 Identities=15% Similarity=0.114 Sum_probs=159.4
Q ss_pred HHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHH---HHHHHcCCHHHHHHHHHHhccCChhHHHHH---HHHHHhcCChH
Q 003868 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAIL---SAYVSAGLIDEAKSLFEAMRERNLLSWTVM---ISGLAQNGYGE 400 (790)
Q Consensus 327 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l---i~~~~~~g~~~ 400 (790)
|...+...|++.+|+.-|....+.|+..|.++. ..|...|+...|+.-|.+..+..+..+.+- ...+.+.|.++
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence 344455667777777777777776666666554 356667777777777776665444333333 34567777788
Q ss_pred HHHHHHHHHHHcCCCCCH--------------HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 003868 401 EGLKLFSQMRLEGFKPCD--------------YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466 (790)
Q Consensus 401 ~A~~~~~~m~~~g~~p~~--------------~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 466 (790)
+|..-|+..++.....+. ......+..+...|+...++.....+++.. +-|...+..-..+|...
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~ 202 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAE 202 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhc
Confidence 888777777665321110 112233444556677777777777766653 45666677777777777
Q ss_pred CCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh-H---HHH---H------HHHH
Q 003868 467 GVVEAANCVFNTMP---NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT-F---LTV---L------SACN 530 (790)
Q Consensus 467 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~---~~l---l------~a~~ 530 (790)
|++..|..-++... ..+....--+-..+-..|+.+.++...++-++ +.||... | -.| . ....
T Consensus 203 ~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~i 280 (504)
T KOG0624|consen 203 GEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAI 280 (504)
T ss_pred CcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777765555443 34555555555666667777777777777666 5676631 1 111 0 0112
Q ss_pred ccCCHHHHHHHHHHcccCCCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCH
Q 003868 531 HAGLVKEGRRYFETMHGPYGIPPG-----EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS-APIWEALLAGCRIHGNI 603 (790)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~ 603 (790)
..+++.++.+-.+...+. .|. ...+..+-..+...|++.+|++.-.+. .+.|| +.++---..+|.....+
T Consensus 281 e~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 281 EEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred hhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHH
Confidence 233444444444433321 222 112223333444555555555544443 33343 33444444555555555
Q ss_pred HHHHHHHHHHHhcCCCCC
Q 003868 604 DLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 604 ~~a~~~~~~~~~~~p~~~ 621 (790)
+.|+.-|+++.+.+++|.
T Consensus 358 D~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 358 DDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHHHHHHHHHhcCcccH
Confidence 566666666665555553
No 91
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.69 E-value=0.00012 Score=77.62 Aligned_cols=353 Identities=14% Similarity=0.113 Sum_probs=213.9
Q ss_pred HHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCC
Q 003868 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNAILSAYVSAGL 367 (790)
Q Consensus 291 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~ 367 (790)
.+...|+.++|.......++ .++. +.+.|..+.-.+-...++++|.+.|..... .|...|.-+.---++.++
T Consensus 50 ~L~~lg~~~ea~~~vr~glr----~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd 124 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLR----NDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRD 124 (700)
T ss_pred hhhcccchHHHHHHHHHHhc----cCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 34556788888877777665 3333 556777777777777888888888877553 344555555555566667
Q ss_pred HHHHHHHHHHhccC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHH------HHHHccCChHHH
Q 003868 368 IDEAKSLFEAMRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG-FKPCDYAFAGAI------TSCAGLGALENG 437 (790)
Q Consensus 368 ~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll------~~~~~~g~~~~a 437 (790)
++.....-....+. .-..|...+.++.-.|+...|..++++..+.. -.|+...+.-.. ......|.++.|
T Consensus 125 ~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~a 204 (700)
T KOG1156|consen 125 YEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKA 204 (700)
T ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 66666665555543 33577777788888888888888888877654 245555444322 223456667777
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCHhHHHHHH-HHHHhcCChHHHH-HHH------
Q 003868 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--VDSVSWNAMI-AALGQHGNGARAI-ELY------ 507 (790)
Q Consensus 438 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~A~-~~~------ 507 (790)
.+.+...... +......-..-.+.+.+.+++++|..++..... ||..-|.-.. .++.+-.+.-+++ .+|
T Consensus 205 le~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 205 LEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 6666554332 111222333445667778888888888887765 4444443332 2222222222222 333
Q ss_pred ----------------------------HHHHHcCCCCChhhHHHHHHHHHccCCH---H-HHHHHHHHcccC--C----
Q 003868 508 ----------------------------EQMLKEGILPDRITFLTVLSACNHAGLV---K-EGRRYFETMHGP--Y---- 549 (790)
Q Consensus 508 ----------------------------~~m~~~g~~p~~~t~~~ll~a~~~~g~~---~-~a~~~~~~~~~~--~---- 549 (790)
..+.+.|+.|-... +.+-|-..... + -+..+...+... +
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d---l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD---LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh---hHHHHhchhHhHHHHHHHHHHHhhcccccCCCccc
Confidence 33344443332222 22222211111 1 122222222211 0
Q ss_pred ---CCCCChhHH--HHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc
Q 003868 550 ---GIPPGEDHY--ARFIDLLCRAGKFSEAKDVIDSL-PFKPSAP-IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622 (790)
Q Consensus 550 ---~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 622 (790)
.-+|+...| -.++..+-+.|+++.|+..++.. .-.|+.+ .|..=.+.+...|+++.|...++++.+++-.|-.
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~ 440 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA 440 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH
Confidence 015555544 46778889999999999999886 4456554 3445557778889999999999999999877744
Q ss_pred chHhhHHHHHhcCChhHHHHHHHHHHhCCC
Q 003868 623 TYVLLSNMYANLGRWDDAARVRKLMRDRGV 652 (790)
Q Consensus 623 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 652 (790)
.-.--++-..++++.++|.++.....+.|.
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 444566666789999999999999887765
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.65 E-value=1.6e-06 Score=87.47 Aligned_cols=159 Identities=14% Similarity=0.083 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc---
Q 003868 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH--- 531 (790)
Q Consensus 455 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--- 531 (790)
+......+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ ...| .+...+..++..
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD-~~l~qLa~awv~l~~ 178 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDED-SILTQLAEAWVNLAT 178 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc-HHHHHHHHHHHHHHh
Confidence 3333445566677888887777765 4555666667778888888888888888876 3333 344444444432
Q ss_pred -cCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCH-HHHH
Q 003868 532 -AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNI-DLGI 607 (790)
Q Consensus 532 -~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~a~ 607 (790)
.+.+.+|..+|+++.+. ..+++.+.+.+.-+....|++++|.+++++. ...| ++.+...++......|+. +.+.
T Consensus 179 g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 179 GGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp TTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred CchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHH
Confidence 23567777777776653 3456666666666666666666666666553 2233 334444555555555555 4555
Q ss_pred HHHHHHHhcCCCC
Q 003868 608 QAAEQLFQLMPHH 620 (790)
Q Consensus 608 ~~~~~~~~~~p~~ 620 (790)
+...++....|++
T Consensus 257 ~~l~qL~~~~p~h 269 (290)
T PF04733_consen 257 RYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHCHHHTTTS
T ss_pred HHHHHHHHhCCCC
Confidence 5666666666654
No 93
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.65 E-value=0.00021 Score=77.37 Aligned_cols=132 Identities=16% Similarity=0.162 Sum_probs=103.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC-hhHHHHHHH
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG-EDHYARFID 563 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 563 (790)
.|......+.+.++.++|...+.+... +.|-. ..|......+...|..++|.+.|..... +.|+ +..-.++..
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHH
Confidence 466667778888888999888777766 44443 4566666677788999999999988763 4554 567788899
Q ss_pred HHHhcCChHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc
Q 003868 564 LLCRAGKFSEAKD--VIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622 (790)
Q Consensus 564 ~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 622 (790)
++.+.|+..-|.. ++..+ ...| +...|-.+...+.+.|+.+.|-..|+-++++++.+|.
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999998777776 77665 5555 6678999999999999999999999999999887763
No 94
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.63 E-value=0.00031 Score=72.81 Aligned_cols=172 Identities=12% Similarity=0.089 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHh
Q 003868 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS-SLSAGNALITMYARCGVVEAANCVFN 477 (790)
Q Consensus 399 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~ 477 (790)
.+.....+++++..-..--..+|...++...+..-+..|+.+|.++.+.+..+ .++++++++..|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44455555555443222223456667777777777777888888877776655 6777777777776 366667777776
Q ss_pred cCCC--CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHccCCHHHHHHHHHHcccCCC--
Q 003868 478 TMPN--VD-SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR--ITFLTVLSACNHAGLVKEGRRYFETMHGPYG-- 550 (790)
Q Consensus 478 ~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 550 (790)
.-.+ +| +.--...+.-+...|+-..|..+|++....++.||. ..|..+|.-=+.-|++..+.++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 5432 23 333344555666666667777777777766555555 3666666666666777666666655544332
Q ss_pred CCCChhHHHHHHHHHHhcCCh
Q 003868 551 IPPGEDHYARFIDLLCRAGKF 571 (790)
Q Consensus 551 ~~p~~~~~~~li~~~~~~g~~ 571 (790)
..+...+-..+++.|.-.+..
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred hcCCCChHHHHHHHHhhcccc
Confidence 233333344455555444433
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.63 E-value=5.7e-07 Score=90.56 Aligned_cols=217 Identities=14% Similarity=0.104 Sum_probs=141.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-CC---CHhHHHH-HHHHH
Q 003868 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NV---DSVSWNA-MIAAL 494 (790)
Q Consensus 420 t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~---~~~~~~~-li~~~ 494 (790)
+...+.+++...|..+.+. ..+.+.. .|.......+...+...++-+.+..-+++.. ++ +..++.. ....+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3444555555666544322 2222222 4555444444443333345555555554433 22 1222222 23445
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhH---HHHHHHHHHhcCCh
Q 003868 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH---YARFIDLLCRAGKF 571 (790)
Q Consensus 495 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~ 571 (790)
...|++++|++++++- .+.......+..+.+.++++.|.+.++.|.+ +..|... ..+.+..+.-...+
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchhH
Confidence 6679999999988642 3445666778899999999999999999985 3344322 22333333334579
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCCh-hHHHHHHHHHH
Q 003868 572 SEAKDVIDSL--PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRW-DDAARVRKLMR 648 (790)
Q Consensus 572 ~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~ 648 (790)
.+|..+|+++ ...+++.+.+.+..+....|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+++.+++
T Consensus 184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 9999999998 34578888899999999999999999999999999999999999999999999998 66788888877
Q ss_pred h
Q 003868 649 D 649 (790)
Q Consensus 649 ~ 649 (790)
.
T Consensus 264 ~ 264 (290)
T PF04733_consen 264 Q 264 (290)
T ss_dssp H
T ss_pred H
Confidence 5
No 96
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.63 E-value=0.0002 Score=79.37 Aligned_cols=559 Identities=13% Similarity=0.027 Sum_probs=287.4
Q ss_pred hhHHHHHhhhCCCCC---hHHHHHHHHHHhcCCChHHHHHHHhhCCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHhh
Q 003868 66 LVYARTLFDEIPQPD---IVARTTLIAAYSASDNVKLAREMFNKTPLK-MRDTVFYNAMITAYSHNSNGHAAIELFRDMR 141 (790)
Q Consensus 66 ~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~ 141 (790)
...|...|-+..+.| ...|..|-.-|+..-+...|.+.|+...+. ..+...+......|++..+++.|..+.-.--
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 444544444443322 236777878887777888888888876654 4566678888888888888888888732222
Q ss_pred hCCCCCChhhHHHHHHHHhcchhhhhhhhhHHHHHHH----hCC-CCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHH
Q 003868 142 RDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVK----SGT-GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216 (790)
Q Consensus 142 ~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~----~g~-~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~ 216 (790)
+.. ..-...++.+-++..- -++. ..|+.+.. ... +.|...|..|..+|..+ |++..|.++
T Consensus 554 qka-~a~~~k~nW~~rG~yy---Lea~--n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~s---------Gry~~AlKv 618 (1238)
T KOG1127|consen 554 QKA-PAFACKENWVQRGPYY---LEAH--NLHGAVCEFQSALRTDPKDYNLWLGLGEAYPES---------GRYSHALKV 618 (1238)
T ss_pred hhc-hHHHHHhhhhhccccc---cCcc--chhhHHHHHHHHhcCCchhHHHHHHHHHHHHhc---------CceehHHHh
Confidence 111 0011112222211111 1111 22222211 122 34667888999999999 999999999
Q ss_pred HccCCCCCeeeHHH---HHHHHHhCCChhHHHHHHHhcccC---CcchhhHHHHhhhhhHHHHHHhCccC--------Ch
Q 003868 217 FDEMPERDELSWTT---MMTGYVKNDYLDAAREFLDGMSEN---VGVAWNALISGYVHRELKMLMLRIQL--------DE 282 (790)
Q Consensus 217 f~~~~~~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~---~~~~~~~li~~~~~~~~~m~~~~~~p--------~~ 282 (790)
|++...-++.+|.. ....-+.+|.+.+|++.+...... -...-+.+-..+++........|+.- ..
T Consensus 619 F~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi 698 (1238)
T KOG1127|consen 619 FTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI 698 (1238)
T ss_pred hhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 98776544444333 233456689999999988765221 00000111111111111001111110 01
Q ss_pred hhHHHHHHHH-Hcc-CChH---HHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCH---H---HHHHHHhhCCC--
Q 003868 283 FTYTSVISAC-ANS-GLFR---LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV---N---EARDIFNQMPE-- 349 (790)
Q Consensus 283 ~t~~~ll~~~-~~~-~~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~---~A~~~f~~m~~-- 349 (790)
..+...+.-- +.. -.+. .+..++.+.. ++ .|+......|..-.-+.+.. | -|.+.+-.-..
T Consensus 699 e~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e-----~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~ 772 (1238)
T KOG1127|consen 699 ESFIVSLIHSLQSDRLQWIVASDACYIFSQEE-----PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLA 772 (1238)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc-----cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHh
Confidence 1111111100 000 0000 1111111111 11 11222222221111111211 1 01111111000
Q ss_pred CChhHHHHHHHHHHHc--------CCHHHHHHHHHHhcc---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003868 350 RDLVSWNAILSAYVSA--------GLIDEAKSLFEAMRE---RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418 (790)
Q Consensus 350 ~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 418 (790)
.+..+|..++..|.+. .+...|...+.+... .+..+||.|.-. ...|.+.-|...|-+-.... +-+.
T Consensus 773 ~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~ 850 (1238)
T KOG1127|consen 773 IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCH 850 (1238)
T ss_pred hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccch
Confidence 2355676666655551 222356666665553 456777777655 55566776766665554432 3455
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-----CC---CCHhHHHHH
Q 003868 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM-----PN---VDSVSWNAM 490 (790)
Q Consensus 419 ~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-----~~---~~~~~~~~l 490 (790)
.+|..+--.+.+..+++.|.+.+....... +.+..-+-...-.....|+.-++..+|..- .+ ++..-|-..
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~ 929 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCA 929 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHH
Confidence 667666667777888888888887766542 223333333333334456676777776642 11 445555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc--------CCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHH--
Q 003868 491 IAALGQHGNGARAIELYEQMLKE--------GILPD-RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA-- 559 (790)
Q Consensus 491 i~~~~~~g~~~~A~~~~~~m~~~--------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-- 559 (790)
..-..++|+.++-+..-++.-.. +-.|+ ...|........+.+.+..|.+...+...-....-+...|+
T Consensus 930 te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynva 1009 (1238)
T KOG1127|consen 930 TEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVA 1009 (1238)
T ss_pred HHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 55556677665554443332211 12343 46777777777777777777776655432111123344444
Q ss_pred --HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc---chHhhHHHHHhc
Q 003868 560 --RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG---TYVLLSNMYANL 634 (790)
Q Consensus 560 --~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~ 634 (790)
.+...++..|.++.|..-+...+..-+..+-.+-+.. .-.|+++.+.+.|++++.+..++.. ....++......
T Consensus 1010 k~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~ 1088 (1238)
T KOG1127|consen 1010 KPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLA 1088 (1238)
T ss_pred hhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhc
Confidence 3344566778888887777666545455444443333 4467899999999999987555443 233444555567
Q ss_pred CChhHHHHHHHHHHh
Q 003868 635 GRWDDAARVRKLMRD 649 (790)
Q Consensus 635 g~~~~a~~~~~~m~~ 649 (790)
+.-+.|...+-+...
T Consensus 1089 ~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1089 RQKNDAQFLLFEVKS 1103 (1238)
T ss_pred ccchHHHHHHHHHHH
Confidence 777888877666654
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=8.5e-05 Score=70.91 Aligned_cols=383 Identities=14% Similarity=0.089 Sum_probs=237.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccC-ChhhHHHHHHHHHccCChHHHHHHHH
Q 003868 228 WTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQL-DEFTYTSVISACANSGLFRLGKQVHA 306 (790)
Q Consensus 228 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~ 306 (790)
+++.+..+.+..+++.|++++..-.+ -.| +....+.+-.+|....++..|-..++
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~E------------------------r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYe 68 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELE------------------------RSPRSRAGLSLLGYCYYRLQEFALAAECYE 68 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHh------------------------cCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888999999999986522 224 55667777777888889999999999
Q ss_pred HHHHhcCCCCCCCChhHHH-HHHHHHHHCCCHHHHHHHHhhCCCC-ChhHHHHHHH--HHHHcCCHHHHHHHHHHhc-cC
Q 003868 307 YLLRTEAKPTPEFSLPVNN-ALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILS--AYVSAGLIDEAKSLFEAMR-ER 381 (790)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~li~--~~~~~g~~~~A~~~~~~m~-~~ 381 (790)
++-. .- |...-|. --...+.+.+.+.+|.++...|.+. +...-..-+. ..-+.+++..+..+.++.+ +.
T Consensus 69 QL~q----l~--P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en 142 (459)
T KOG4340|consen 69 QLGQ----LH--PELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN 142 (459)
T ss_pred HHHh----hC--hHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC
Confidence 8865 22 2222221 1234456788999999999998873 3222222222 2345688888999999998 46
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCC---------
Q 003868 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS--------- 451 (790)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~--------- 451 (790)
+..+.+.......+.|++++|++-|+...+- |..| ...|+..+ +..+.++.+.|.+...+++++|+..
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~ 220 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMT 220 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccce
Confidence 6777788888888999999999999998775 4544 55666655 4556789999999999999876542
Q ss_pred ----ch--------hHHHHHH-------HHHHhcCCHHHHHHHHhcCCC-----CCHhHHHHHHHHHHhcCChHHHHHHH
Q 003868 452 ----SL--------SAGNALI-------TMYARCGVVEAANCVFNTMPN-----VDSVSWNAMIAALGQHGNGARAIELY 507 (790)
Q Consensus 452 ----~~--------~~~~~li-------~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~ 507 (790)
|+ ..-++++ ..+.+.|+.+.|.+.+-.|+. .|++|...+.-.= ..+++.+..+-+
T Consensus 221 tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KL 299 (459)
T KOG4340|consen 221 TEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKL 299 (459)
T ss_pred eccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHH
Confidence 11 1123333 345678999999999999985 4777776553322 244555555555
Q ss_pred HHHHHcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHH-hcCChHHHHHHHHhCCCCC
Q 003868 508 EQMLKEGILPD-RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC-RAGKFSEAKDVIDSLPFKP 585 (790)
Q Consensus 508 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~p 585 (790)
.-+.+ +.|- ..||..++-.|++..-++-|-.++-+-....-.-.+...|+ |++++. -.-..++|++-++.+.-.-
T Consensus 300 qFLL~--~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l 376 (459)
T KOG4340|consen 300 QFLLQ--QNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML 376 (459)
T ss_pred HHHHh--cCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 55555 3453 36999999999999999998888765322100011233333 333333 3345566665554431000
Q ss_pred CHHHHHHHHHH-HHHhCCHH----HHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 586 SAPIWEALLAG-CRIHGNID----LGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 586 ~~~~~~~ll~~-~~~~g~~~----~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
....-..-+.. -.++.+-+ .+++-++..+++.- .....-++.|.+..++.-+.++|..-.+
T Consensus 377 ~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 377 TEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 00000000000 01122222 22333444444321 2344556777788888888888887654
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.61 E-value=6.8e-05 Score=79.73 Aligned_cols=195 Identities=13% Similarity=-0.030 Sum_probs=105.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCh--hhHHHHHHHHH
Q 003868 457 NALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI-LPDR--ITFLTVLSACN 530 (790)
Q Consensus 457 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~ 530 (790)
..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|+..+++.....- .|+. ..|..+...+.
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 3444556666666666666665543 2344556666666667777777777666655311 1121 12344555666
Q ss_pred ccCCHHHHHHHHHHcccCCCCCCChhHH-H--HHHHHHHhcCChHHHHHH---HHh---C-CCCCCHHHHHHHHHHHHHh
Q 003868 531 HAGLVKEGRRYFETMHGPYGIPPGEDHY-A--RFIDLLCRAGKFSEAKDV---IDS---L-PFKPSAPIWEALLAGCRIH 600 (790)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~---~-~~~p~~~~~~~ll~~~~~~ 600 (790)
..|++++|..+++.........+..... + .+...+...|..+.+.+. ... . +.............++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 6777777777776654321111111111 1 222233333432222222 111 1 1111112223455566777
Q ss_pred CCHHHHHHHHHHHHhcCCC---------CCcchHhhHHHHHhcCChhHHHHHHHHHHhCC
Q 003868 601 GNIDLGIQAAEQLFQLMPH---------HAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651 (790)
Q Consensus 601 g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 651 (790)
|+.+.|...++.+....-. ........+.++...|++++|.+.+......+
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8888888888777653211 23455677788889999999999999887643
No 99
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=3.1e-05 Score=80.20 Aligned_cols=389 Identities=14% Similarity=0.075 Sum_probs=207.2
Q ss_pred CCHHHHHHHHccC---CCCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCCh-h
Q 003868 208 SLMGAARRVFDEM---PERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDE-F 283 (790)
Q Consensus 208 g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~-~ 283 (790)
|+++.|...|-+- .++|-+.|..-..+|+..|++++|++=-.+ ...+.|+. .
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k------------------------~~~l~p~w~k 71 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATK------------------------TRRLNPDWAK 71 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHH------------------------HHhcCCchhh
Confidence 9999999999744 345888999999999999999999876553 34566764 5
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHH-HHHHhhCCCCChhHHHHH----
Q 003868 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA-RDIFNQMPERDLVSWNAI---- 358 (790)
Q Consensus 284 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~f~~m~~~~~~~~~~l---- 358 (790)
.|+-.-.++...|++++|..-|..-++ .. +.+...++.|.+++ ..+.+ .+.|. .| ..|..+
T Consensus 72 gy~r~Gaa~~~lg~~~eA~~ay~~GL~----~d-~~n~~L~~gl~~a~----~~~~~~~~~~~---~p--~~~~~l~~~p 137 (539)
T KOG0548|consen 72 GYSRKGAALFGLGDYEEAILAYSEGLE----KD-PSNKQLKTGLAQAY----LEDYAADQLFT---KP--YFHEKLANLP 137 (539)
T ss_pred HHHHhHHHHHhcccHHHHHHHHHHHhh----cC-CchHHHHHhHHHhh----hHHHHhhhhcc---Cc--HHHHHhhcCh
Confidence 688888888999999999999998886 43 34777888888888 11211 11111 11 111111
Q ss_pred -HHHHHHcCCHHHHHHHHHHhccCChhH---HHHHHHHHHhcCChHH-HHHHH------------HHHHHcC--------
Q 003868 359 -LSAYVSAGLIDEAKSLFEAMRERNLLS---WTVMISGLAQNGYGEE-GLKLF------------SQMRLEG-------- 413 (790)
Q Consensus 359 -i~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~li~~~~~~g~~~~-A~~~~------------~~m~~~g-------- 413 (790)
.+.+...-.+..-++.+..-+.. +-. ...++.+.......+. ....- ..+....
T Consensus 138 ~t~~~~~~~~~~~~l~~~~~~p~~-l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~e 216 (539)
T KOG0548|consen 138 LTNYSLSDPAYVKILEIIQKNPTS-LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTE 216 (539)
T ss_pred hhhhhhccHHHHHHHHHhhcCcHh-hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHH
Confidence 11111111111111111111100 000 0000000000000000 00000 0000000
Q ss_pred ---CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCH------
Q 003868 414 ---FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS------ 484 (790)
Q Consensus 414 ---~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~------ 484 (790)
.+--..-...+.++..+..+++.+.+-+...+... .+..-++....+|...|....+...-+...+...
T Consensus 217 e~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~ 294 (539)
T KOG0548|consen 217 ERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADY 294 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHH
Confidence 00001123445566666677777777777777664 5555666677777777777666655554333211
Q ss_pred ----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCCh-hHHH
Q 003868 485 ----VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE-DHYA 559 (790)
Q Consensus 485 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~ 559 (790)
.+...+..+|.+.++++.|+..|.+.......||..+ +....+++........ -+.|.. .-..
T Consensus 295 klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r 362 (539)
T KOG0548|consen 295 KLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEER 362 (539)
T ss_pred HHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHH
Confidence 1122234466667788888888888666545544321 1122233333322221 112221 1111
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCCh
Q 003868 560 RFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRW 637 (790)
Q Consensus 560 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 637 (790)
.=...+.+.|++..|...+.++ ...| |...|..-..+|.+-|++..|+.-.+..++++|+....|..=+-++....+|
T Consensus 363 ~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 363 EKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 1244455666666666666654 2234 4455666666666666666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHHh
Q 003868 638 DDAARVRKLMRD 649 (790)
Q Consensus 638 ~~a~~~~~~m~~ 649 (790)
++|.+.|.+..+
T Consensus 443 dkAleay~eale 454 (539)
T KOG0548|consen 443 DKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHh
Confidence 666666666544
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.52 E-value=0.0021 Score=77.76 Aligned_cols=234 Identities=9% Similarity=-0.008 Sum_probs=135.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHh----CCCC---ch
Q 003868 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGF---KP--CDYAFAGAITSCAGLGALENGRQLHAQLVHS----GYDS---SL 453 (790)
Q Consensus 386 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----g~~~---~~ 453 (790)
++.+...+...|++++|...+++.....- .+ ...++..+...+...|+++.|...+.+.... +... ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 34444455556666666666665543210 11 1123334445556677777777766665442 2111 12
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC------C--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChhhHH-
Q 003868 454 SAGNALITMYARCGVVEAANCVFNTMPN------V--DSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL-PDRITFL- 523 (790)
Q Consensus 454 ~~~~~li~~y~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~- 523 (790)
..+..+...+...|++++|...+++... + ....+..+...+...|++++|.+.+++.....-. .....+.
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 2344455566667888888777765532 1 1233444566777889999999888887542111 1111111
Q ss_pred ----HHHHHHHccCCHHHHHHHHHHcccCCCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HH
Q 003868 524 ----TVLSACNHAGLVKEGRRYFETMHGPYGIPPG---EDHYARFIDLLCRAGKFSEAKDVIDSL-------PFKPS-AP 588 (790)
Q Consensus 524 ----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~ 588 (790)
..+..+...|+.+.|...+...... ..... ...+..+..++...|+.++|...+++. +..++ ..
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 1123345578899999888776542 11111 111345667788889999988888765 22222 23
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 003868 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 589 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 620 (790)
+...+..++...|+.++|...+++++++....
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 55666777888999999999999999885443
No 101
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=9.8e-05 Score=70.51 Aligned_cols=321 Identities=12% Similarity=0.090 Sum_probs=200.0
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCC--C-ChHHHHHHHHHHhcCCChHHHHHHHhhCCCCCCCcchHHH-H
Q 003868 45 GFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ--P-DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNA-M 120 (790)
Q Consensus 45 g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~n~-l 120 (790)
|+....--+++.+-.+.+..++.+|.+++....+ | +....+.|-..|-...++..|-..++++...-|...-|.. -
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~ 84 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ 84 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 4444444567777777888899999998887766 3 4455666777788888899998888877654444444432 2
Q ss_pred HHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchhhhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCC
Q 003868 121 ITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVS 200 (790)
Q Consensus 121 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~ 200 (790)
...+.+.+.+.+|+.+...|... |+ |..-|. ++...+ + |..
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~---~~------L~~~~l----------qLqaAI-k----------------Yse--- 125 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDN---PA------LHSRVL----------QLQAAI-K----------------YSE--- 125 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCC---HH------HHHHHH----------HHHHHH-h----------------ccc---
Confidence 34566778888899988888642 11 111111 111111 1 111
Q ss_pred CCccCCCCCHHHHHHHHccCC-CCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCcc
Q 003868 201 SPFVSSRSLMGAARRVFDEMP-ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQ 279 (790)
Q Consensus 201 ~~~~~~~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~ 279 (790)
+++..++.+.++.+ +.+..+.+...-...+.|++++|++-|+... .-.|..
T Consensus 126 -------~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAl---------------------qvsGyq 177 (459)
T KOG4340|consen 126 -------GDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAAL---------------------QVSGYQ 177 (459)
T ss_pred -------ccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHH---------------------hhcCCC
Confidence 88888999999988 4566666666666778999999999999873 234554
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHH
Q 003868 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAIL 359 (790)
Q Consensus 280 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li 359 (790)
| ...|+..+-.| +.++.+.|.+...+++.+|...-++..+-.-+-.+++-.-.+-...+..- -+..+|.-.
T Consensus 178 p-llAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa-------l~eAfNLKa 248 (459)
T KOG4340|consen 178 P-LLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA-------LVEAFNLKA 248 (459)
T ss_pred c-hhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH-------HHHHhhhhh
Confidence 4 45677666544 56889999999999998665444443332222222110000000000000 122455555
Q ss_pred HHHHHcCCHHHHHHHHHHhccC-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCh
Q 003868 360 SAYVSAGLIDEAKSLFEAMRER-----NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434 (790)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 434 (790)
..+.+.|+++.|.+.+..|+.+ |++|...+.-.= ..+++.+..+-++-+...+ +-...||..++-.||+..-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHH
Confidence 6677889999999999888854 566665554322 2344555555555555443 23456888888888888888
Q ss_pred HHHHHHHHH
Q 003868 435 ENGRQLHAQ 443 (790)
Q Consensus 435 ~~a~~i~~~ 443 (790)
+.|-.++.+
T Consensus 327 ~lAADvLAE 335 (459)
T KOG4340|consen 327 DLAADVLAE 335 (459)
T ss_pred hHHHHHHhh
Confidence 888777765
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.50 E-value=0.00017 Score=87.13 Aligned_cols=384 Identities=13% Similarity=0.018 Sum_probs=235.4
Q ss_pred chhhHHHHhhhhhHHHHHHhCccCCh--hhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCC-ChhHHHHHHHHHHH
Q 003868 257 VAWNALISGYVHRELKMLMLRIQLDE--FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF-SLPVNNALVTLYWK 333 (790)
Q Consensus 257 ~~~~~li~~~~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~ 333 (790)
..|+.++..++.... ....|+. .........+...|++..+....... +... -.............
T Consensus 318 yr~H~L~r~~l~~~l----~~~~~~~~~~lh~raa~~~~~~g~~~~Al~~a~~a-------~d~~~~~~ll~~~a~~l~~ 386 (903)
T PRK04841 318 FRYHPLFASFLRHRC----QWELAQELPELHRAAAEAWLAQGFPSEAIHHALAA-------GDAQLLRDILLQHGWSLFN 386 (903)
T ss_pred EehhHHHHHHHHHHH----HhcCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHC-------CCHHHHHHHHHHhHHHHHh
Confidence 445666666555531 1111221 22333444556667766655433221 1110 01111222334556
Q ss_pred CCCHHHHHHHHhhCCC----CChhHHHHHHHHHHHcCCHHHHHHHHHHhcc----CC---h-----hHHHHHHHHHHhcC
Q 003868 334 CGKVNEARDIFNQMPE----RDLVSWNAILSAYVSAGLIDEAKSLFEAMRE----RN---L-----LSWTVMISGLAQNG 397 (790)
Q Consensus 334 ~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~---~-----~~~~~li~~~~~~g 397 (790)
.|+++.+...++.++. .+..........+...|++++|...+....+ .+ . .....+...+...|
T Consensus 387 ~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 466 (903)
T PRK04841 387 QGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDG 466 (903)
T ss_pred cCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCC
Confidence 7888888888888752 2233333445556778999999988876632 11 1 12223344566799
Q ss_pred ChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHh----CC-CCchhHHHHHHHHHHhcCC
Q 003868 398 YGEEGLKLFSQMRLEGFKPCD----YAFAGAITSCAGLGALENGRQLHAQLVHS----GY-DSSLSAGNALITMYARCGV 468 (790)
Q Consensus 398 ~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----g~-~~~~~~~~~li~~y~~~g~ 468 (790)
++++|...+++....-...+. .....+...+...|++++|...+...... |. .........+...+...|+
T Consensus 467 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~ 546 (903)
T PRK04841 467 DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF 546 (903)
T ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC
Confidence 999999999987763112222 23444555677899999999999887753 21 1112345566778889999
Q ss_pred HHHHHHHHhcCCC-------C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC--hhhHHHHHHHHHccC
Q 003868 469 VEAANCVFNTMPN-------V----DSVSWNAMIAALGQHGNGARAIELYEQMLKEG--ILPD--RITFLTVLSACNHAG 533 (790)
Q Consensus 469 ~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t~~~ll~a~~~~g 533 (790)
++.|...+++... + ....+..+...+...|++++|...+++..... ..|. ...+..+.......|
T Consensus 547 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G 626 (903)
T PRK04841 547 LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARG 626 (903)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcC
Confidence 9999998876532 1 12234455566777899999999999876531 1222 224444556777899
Q ss_pred CHHHHHHHHHHcccCCCCCCChhHH-----HHHHHHHHhcCChHHHHHHHHhCCCC--CCH----HHHHHHHHHHHHhCC
Q 003868 534 LVKEGRRYFETMHGPYGIPPGEDHY-----ARFIDLLCRAGKFSEAKDVIDSLPFK--PSA----PIWEALLAGCRIHGN 602 (790)
Q Consensus 534 ~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~ll~~~~~~g~ 602 (790)
+.++|.+.+..+............+ ......+...|+.+.|.+.+...... ... ..+..+..++...|+
T Consensus 627 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 706 (903)
T PRK04841 627 DLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQ 706 (903)
T ss_pred CHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCC
Confidence 9999999988774311111111111 11224456689999999998775311 111 124456677888899
Q ss_pred HHHHHHHHHHHHhcCC------CCCcchHhhHHHHHhcCChhHHHHHHHHHHhCC
Q 003868 603 IDLGIQAAEQLFQLMP------HHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651 (790)
Q Consensus 603 ~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 651 (790)
.++|...++++++... ....++..++.+|.+.|+.++|.+.+.+..+..
T Consensus 707 ~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 707 FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999887521 123467788999999999999999999997643
No 103
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.49 E-value=0.00057 Score=72.58 Aligned_cols=355 Identities=15% Similarity=0.156 Sum_probs=240.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHHHHHHH
Q 003868 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNAILSA 361 (790)
Q Consensus 285 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~ 361 (790)
|..++..| ..+++..+.+..+.+++.- +....+.....-.+...|+-++|....+.-.. ++.+.|..+.-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k~-----~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKKF-----PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHhC-----CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 44444444 4577788888888887621 11222333333345677899999988877665 466789999888
Q ss_pred HHHcCCHHHHHHHHHHhcc---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCChHHH
Q 003868 362 YVSAGLIDEAKSLFEAMRE---RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP-CDYAFAGAITSCAGLGALENG 437 (790)
Q Consensus 362 ~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a 437 (790)
+-...++++|++.|..... .|...|.-+.-.-.+.++++.....-.+..+. .| ....|..+..+..-.|+...|
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999998764 46678888888888889999888887777764 34 345677777778888999999
Q ss_pred HHHHHHHHHhC-CCCchhHHHHHH------HHHHhcCCHHHHHHHHhcCCCC--CHhHH-HHHHHHHHhcCChHHHHHHH
Q 003868 438 RQLHAQLVHSG-YDSSLSAGNALI------TMYARCGVVEAANCVFNTMPNV--DSVSW-NAMIAALGQHGNGARAIELY 507 (790)
Q Consensus 438 ~~i~~~~~~~g-~~~~~~~~~~li------~~y~~~g~~~~A~~~~~~~~~~--~~~~~-~~li~~~~~~g~~~~A~~~~ 507 (790)
..+.++..+.. -.|+...+.-.. ....+.|..++|.+.+...... |-..+ ......+.+.++.++|..+|
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 99999998875 345555443332 3345778889998888776542 32322 34456678899999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHH-ccCCHHHHH-HHHHHcccCC---------------------------------CCC
Q 003868 508 EQMLKEGILPDRITFLTVLSACN-HAGLVKEGR-RYFETMHGPY---------------------------------GIP 552 (790)
Q Consensus 508 ~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~-~~~~~~~~~~---------------------------------~~~ 552 (790)
..++. -.||..-|...+..+. +.-+.-++. .+|....+.+ |++
T Consensus 243 ~~Ll~--rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 243 RRLLE--RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHHHh--hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 99998 5788876665555443 222222222 4444433221 222
Q ss_pred CChhHHHHHHHHHHhcCChHH----HHHHHHhC-C------------CCCCHHHHHH--HHHHHHHhCCHHHHHHHHHHH
Q 003868 553 PGEDHYARFIDLLCRAGKFSE----AKDVIDSL-P------------FKPSAPIWEA--LLAGCRIHGNIDLGIQAAEQL 613 (790)
Q Consensus 553 p~~~~~~~li~~~~~~g~~~~----A~~~~~~~-~------------~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~~ 613 (790)
+ ++..+...|-.-...+- +..+...+ + .+|....|.. +...+-..|+++.|+...+.+
T Consensus 321 ~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 321 S---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred c---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2 12222222222111111 11222222 1 2567777765 455577889999999999999
Q ss_pred HhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCC
Q 003868 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652 (790)
Q Consensus 614 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 652 (790)
++.-|.-...|..-+.++...|.+++|..++++..+...
T Consensus 398 IdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 398 IDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred hccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 999998888899999999999999999999999876433
No 104
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.48 E-value=0.00019 Score=76.39 Aligned_cols=251 Identities=13% Similarity=0.107 Sum_probs=141.6
Q ss_pred HHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccC
Q 003868 361 AYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGLAQ----NGYGEEGLKLFSQMRLEGFKPCD-YAFAGAITSCAGLG 432 (790)
Q Consensus 361 ~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g 432 (790)
.+...|++++|.+.+++..+. +...+.. ...+.. .+....+.+.+.. ..+..|+. .....+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 455567777777776665542 2233332 222222 3344444444443 11223333 33344555677788
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC--HhHHHHHHHHHHhcCChHHHHH
Q 003868 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN-----VD--SVSWNAMIAALGQHGNGARAIE 505 (790)
Q Consensus 433 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~--~~~~~~li~~~~~~g~~~~A~~ 505 (790)
++++|.+.++...+.. +.+...+..+...|...|++++|...+++..+ ++ ...|..+...+...|++++|+.
T Consensus 129 ~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 129 QYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 8888888888888764 44566777888888888899988888887654 12 2345567788888999999999
Q ss_pred HHHHHHHcCCCCCh-hhH-H--HHHHHHHccCCHHHHHHH---HHHcccC-CCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 003868 506 LYEQMLKEGILPDR-ITF-L--TVLSACNHAGLVKEGRRY---FETMHGP-YGIPPGEDHYARFIDLLCRAGKFSEAKDV 577 (790)
Q Consensus 506 ~~~~m~~~g~~p~~-~t~-~--~ll~a~~~~g~~~~a~~~---~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 577 (790)
+|++.......+.. ... . .++.-+...|..+.+.+. ....... .+ ..........+.++...|+.++|..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 99988653211121 111 1 222333334432222222 1111110 01 11112223566677889999999998
Q ss_pred HHhCC--CCC---CH----HHHHHHH--HHHHHhCCHHHHHHHHHHHHhc
Q 003868 578 IDSLP--FKP---SA----PIWEALL--AGCRIHGNIDLGIQAAEQLFQL 616 (790)
Q Consensus 578 ~~~~~--~~p---~~----~~~~~ll--~~~~~~g~~~~a~~~~~~~~~~ 616 (790)
++.+. .+. .. .+...++ -++...|+.+.|.+.+..++..
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 87761 111 11 1222223 3346789999999999988765
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.48 E-value=9.9e-06 Score=80.38 Aligned_cols=179 Identities=13% Similarity=0.041 Sum_probs=116.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-H---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh----h
Q 003868 452 SLSAGNALITMYARCGVVEAANCVFNTMPN--VD-S---VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI----T 521 (790)
Q Consensus 452 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t 521 (790)
....+..+...|.+.|++++|...|+++.. |+ . ..|..+..++.+.|++++|+..++++.+ ..|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence 445566667777777788887777776643 22 1 3556667777777788888888877776 345432 3
Q ss_pred HHHHHHHHHcc--------CCHHHHHHHHHHcccCCCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 003868 522 FLTVLSACNHA--------GLVKEGRRYFETMHGPYGIPPGE-DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592 (790)
Q Consensus 522 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 592 (790)
+..+..++... |+.++|.+.|+.+.+. .|+. ..+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 44444445443 5677777777777643 2322 222221111 0011100 001124
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCC---cchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHA---GTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 593 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
+...+...|+++.|+..++++++..|+++ ..+..++.+|...|++++|..+++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55667888999999999999999977654 68899999999999999999999988654
No 106
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.48 E-value=8.2e-06 Score=92.84 Aligned_cols=201 Identities=12% Similarity=0.120 Sum_probs=165.7
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh
Q 003868 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPN--------VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521 (790)
Q Consensus 450 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 521 (790)
+.+...|-..|......+++++|++++++... .-...|.++++.-...|.-+...++|++..+- .--...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 45566777888888888999999999887753 13457888888888888888999999999873 323356
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 003868 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS---APIWEALLAGC 597 (790)
Q Consensus 522 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~ 597 (790)
|..|...|.+.+..++|-++++.|.++++ .....|...++.+.+..+-++|..++++. ..-|. .....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999765 67788999999999999999999998875 33333 33445555566
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 003868 598 RIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKK 654 (790)
Q Consensus 598 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 654 (790)
.++||.+++..+|+.++...|.....|+.+++.-.+.|..+.++.+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 789999999999999999999999999999999999999999999999998877653
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.44 E-value=3.9e-06 Score=75.39 Aligned_cols=122 Identities=11% Similarity=0.013 Sum_probs=82.1
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 003868 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PF 583 (790)
Q Consensus 505 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 583 (790)
.+|++..+ +.|+. +..+..++...|++++|...|+.+.. --+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44555555 45554 34455666777777777777777664 23345666777777777777777777777765 33
Q ss_pred CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHH
Q 003868 584 KP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632 (790)
Q Consensus 584 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 632 (790)
.| +...|..+..++...|+.++|+..++++++..|+++..+...+++..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 33 55667777777777788888888888888888887777766665543
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.42 E-value=1.5e-05 Score=75.88 Aligned_cols=146 Identities=10% Similarity=0.074 Sum_probs=110.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCC
Q 003868 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570 (790)
Q Consensus 491 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 570 (790)
+..|...|+++.+....+++.. |. . .+...++.+++...++...+ .-+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3457777777765444322221 11 0 12235666777777777665 446678889999999999999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHhCC--HHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHH
Q 003868 571 FSEAKDVIDSL-PFKP-SAPIWEALLAGC-RIHGN--IDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645 (790)
Q Consensus 571 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 645 (790)
+++|...+++. ...| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..|+..+.+.|++++|...++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999886 4455 566777777764 66677 5999999999999999999999999999999999999999999
Q ss_pred HHHhC
Q 003868 646 LMRDR 650 (790)
Q Consensus 646 ~m~~~ 650 (790)
++.+.
T Consensus 169 ~aL~l 173 (198)
T PRK10370 169 KVLDL 173 (198)
T ss_pred HHHhh
Confidence 99764
No 109
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.38 E-value=0.00064 Score=75.57 Aligned_cols=174 Identities=12% Similarity=0.085 Sum_probs=108.3
Q ss_pred hHHHHHHHhhCCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh-hhhhhhhHHH
Q 003868 97 VKLAREMFNKTPLK-MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE-EEKQCMQMHC 174 (790)
Q Consensus 97 ~~~A~~~~~~~~~~-~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~ 174 (790)
...|...|-+..+. ..=...|..|-..|..-.+...|.+.|+...+-. .-|......+...+++..+ +.+. .+
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~--~I-- 548 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAF--EI-- 548 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHH--HH--
Confidence 56666666544432 1223469999999998889999999999987542 2244556666777777766 5544 33
Q ss_pred HHHHhCCCCch--hHHH--HHHHhhhccCCCCccCCCCCHHHHHHHHccCC---CCCeeeHHHHHHHHHhCCChhHHHHH
Q 003868 175 TVVKSGTGLFT--SVLN--ALISVYVKCVSSPFVSSRSLMGAARRVFDEMP---ERDELSWTTMMTGYVKNDYLDAAREF 247 (790)
Q Consensus 175 ~~~~~g~~~~~--~~~~--~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l 247 (790)
....+-.... ..+| ..--.|.+. ++...|..-|+.-. ..|...|..+..+|...|++..|+++
T Consensus 549 -~l~~~qka~a~~~k~nW~~rG~yyLea---------~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKv 618 (1238)
T KOG1127|consen 549 -CLRAAQKAPAFACKENWVQRGPYYLEA---------HNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKV 618 (1238)
T ss_pred -HHHHhhhchHHHHHhhhhhccccccCc---------cchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHh
Confidence 1111111111 1111 111123333 77778888887554 34888999999999999999999999
Q ss_pred HHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHH--HHccCChHHHHHHHHHHHH
Q 003868 248 LDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA--CANSGLFRLGKQVHAYLLR 310 (790)
Q Consensus 248 ~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~ 310 (790)
|.+. .-+.|+. +|...-.+ -+..|...++...++.++.
T Consensus 619 F~kA------------------------s~LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 619 FTKA------------------------SLLRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hhhh------------------------HhcCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9854 3445543 23322222 3456788888887777765
No 110
>PF12854 PPR_1: PPR repeat
Probab=98.38 E-value=4.3e-07 Score=57.91 Aligned_cols=33 Identities=42% Similarity=0.599 Sum_probs=21.7
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHhhhCC
Q 003868 45 GFKPREHIINRLIDIYCKSLKLVYARTLFDEIP 77 (790)
Q Consensus 45 g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 77 (790)
|+.||..+||.||.+|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566666666666666666666666666666653
No 111
>PF12854 PPR_1: PPR repeat
Probab=98.38 E-value=5.8e-07 Score=57.34 Aligned_cols=32 Identities=34% Similarity=0.663 Sum_probs=23.0
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 003868 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581 (790)
Q Consensus 550 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 581 (790)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66677777777777777777777777777766
No 112
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=0.0004 Score=72.27 Aligned_cols=165 Identities=15% Similarity=0.097 Sum_probs=111.6
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHccCCH
Q 003868 459 LITMYARCGVVEAANCVFNTMPN--VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI-TFLTVLSACNHAGLV 535 (790)
Q Consensus 459 li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~ 535 (790)
+..+|.+.++.+.|...|.+... ++... ..+....++++...+...- +.|+.. -...-...+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 34467777888888888877543 12111 1222344555555544443 445542 222235667788999
Q ss_pred HHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003868 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSA-PIWEALLAGCRIHGNIDLGIQAAEQL 613 (790)
Q Consensus 536 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~ 613 (790)
..|+..+.++++. .+-|...|....-+|.+.|.+.+|++=-+.. ...|+. ..|.-=..++....+++.|.+.|++.
T Consensus 375 ~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 375 PEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998873 4667888999999999999999888765554 334443 34544455666678999999999999
Q ss_pred HhcCCCCCcchHhhHHHHHhc
Q 003868 614 FQLMPHHAGTYVLLSNMYANL 634 (790)
Q Consensus 614 ~~~~p~~~~~~~~l~~~~~~~ 634 (790)
++.+|++......+..++...
T Consensus 453 le~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 453 LELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HhcCchhHHHHHHHHHHHHHh
Confidence 999999977777776666553
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.32 E-value=2.4e-05 Score=70.27 Aligned_cols=106 Identities=13% Similarity=-0.004 Sum_probs=90.7
Q ss_pred HHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 003868 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617 (790)
Q Consensus 540 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 617 (790)
.+|+...+ +.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...|+++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34444442 3444 3556788899999999999999986 4445 67889999999999999999999999999999
Q ss_pred CCCCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 618 PHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 618 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
|+++.++..++.++...|++++|.+.++...+.
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998763
No 114
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=2.3e-05 Score=81.88 Aligned_cols=214 Identities=17% Similarity=0.184 Sum_probs=163.7
Q ss_pred HHHHHCCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCChHHH
Q 003868 329 TLYWKCGKVNEARDIFNQMPER---DLVSWNAILSAYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGLAQNGYGEEG 402 (790)
Q Consensus 329 ~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A 402 (790)
.-+.+.|++.+|.-.|+..... +...|..|......+++-..|+..+.+..+- |..+.-.|.-.|...|.-.+|
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 3467888999999999887653 5678999999999999999999999988874 457888888899999999999
Q ss_pred HHHHHHHHHcCCC--------CCHHHHHHHHHHHHccCChHHHHHHHHHHH-HhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 003868 403 LKLFSQMRLEGFK--------PCDYAFAGAITSCAGLGALENGRQLHAQLV-HSGYDSSLSAGNALITMYARCGVVEAAN 473 (790)
Q Consensus 403 ~~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~-~~g~~~~~~~~~~li~~y~~~g~~~~A~ 473 (790)
++.+++-+....+ ++..+-.. ..+.....+....++|-++. ..+...|..++..|.-.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9999987653210 00000000 11122223344455554444 4465688889999999999999999999
Q ss_pred HHHhcCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHcc
Q 003868 474 CVFNTMPN--V-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI-TFLTVLSACNHAGLVKEGRRYFETMH 546 (790)
Q Consensus 474 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~ 546 (790)
..|+.... | |...||.|...++...+.++|+..|++.++ ++|+.+ ....|.-+|...|.+++|...|-.+.
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99998764 3 788999999999999999999999999999 899885 55556678999999999998876653
No 115
>PLN02789 farnesyltranstransferase
Probab=98.28 E-value=0.00012 Score=74.91 Aligned_cols=162 Identities=9% Similarity=0.050 Sum_probs=98.4
Q ss_pred HHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHH
Q 003868 469 VEAANCVFNTMPN---VDSVSWNAMIAALGQHGNG--ARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYF 542 (790)
Q Consensus 469 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~ 542 (790)
+++++..++++.+ .+...|+.....+.+.|+. ++++.+++++.+ ..|+. .+|.....++.+.|+++++++.+
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4555555544432 2344455444444444442 556666666666 34433 46666666666667777777777
Q ss_pred HHcccCCCCCCChhHHHHHHHHHHhc---CCh----HHHHHHHHh-CCCCC-CHHHHHHHHHHHHHh----CCHHHHHHH
Q 003868 543 ETMHGPYGIPPGEDHYARFIDLLCRA---GKF----SEAKDVIDS-LPFKP-SAPIWEALLAGCRIH----GNIDLGIQA 609 (790)
Q Consensus 543 ~~~~~~~~~~p~~~~~~~li~~~~~~---g~~----~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~ 609 (790)
+++.+. -+-+...|+.....+.+. |.+ +++.++..+ +...| |...|+.+...+... ++..+|...
T Consensus 166 ~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 777652 233445555544444433 222 345565533 34445 567888888888774 345678888
Q ss_pred HHHHHhcCCCCCcchHhhHHHHHhc
Q 003868 610 AEQLFQLMPHHAGTYVLLSNMYANL 634 (790)
Q Consensus 610 ~~~~~~~~p~~~~~~~~l~~~~~~~ 634 (790)
+.+++...|.++.+...|+++|++.
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhh
Confidence 8888888899988999999999864
No 116
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.27 E-value=1.7e-05 Score=69.95 Aligned_cols=118 Identities=15% Similarity=0.117 Sum_probs=97.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHH
Q 003868 555 EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632 (790)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 632 (790)
.+..-.+...+...|++++|.++|+-. ...| +..-|-.|...|...|++++|+..|.++..++|+++.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344445666778899999999999876 3445 56789999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHHH
Q 003868 633 NLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMR 695 (790)
Q Consensus 633 ~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 695 (790)
..|+.+.|++-|+...... ..+|+..++..+.+...+.+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999886421 135677777777777666554
No 117
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.26 E-value=0.0013 Score=64.34 Aligned_cols=283 Identities=10% Similarity=0.066 Sum_probs=192.7
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--CChhH-HHHHHHHHH
Q 003868 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--RDLVS-WNAILSAYV 363 (790)
Q Consensus 287 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~-~~~li~~~~ 363 (790)
-+-+.+...|.+..|..-+...+. .+ +.+-.++-.-...|...|+-..|..=|.++.+ ||-.. --.-...+.
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve----~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVE----GD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHc----CC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 344455566777777777666664 22 22333333445677778887777777776654 44221 111224577
Q ss_pred HcCCHHHHHHHHHHhccCCh------h----------HH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003868 364 SAGLIDEAKSLFEAMRERNL------L----------SW--TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425 (790)
Q Consensus 364 ~~g~~~~A~~~~~~m~~~~~------~----------~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 425 (790)
++|.+++|..-|+...+.++ . .| ...+..+...|+...|+.....+++- .+-|...+..-.
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Ra 196 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARA 196 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHH
Confidence 88999999888888875432 1 12 23455666788999999999988874 245666777777
Q ss_pred HHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCHh----HHHHH---------
Q 003868 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--VDSV----SWNAM--------- 490 (790)
Q Consensus 426 ~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~----~~~~l--------- 490 (790)
.+|...|.+..|+.=++.+.+..- .++....-+-..+...|+.+.++...++..+ ||-. .|..+
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHH
Confidence 888899999988887777776643 3445555677788888999998888887765 3221 12211
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCh--hh---HHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC-hhHHHHHHHH
Q 003868 491 IAALGQHGNGARAIELYEQMLKEGILPDR--IT---FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG-EDHYARFIDL 564 (790)
Q Consensus 491 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t---~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 564 (790)
+......+++.++++..+...+. .|.. ++ +..+-.++...|.+.+|++...++.. +.|+ +.++.--.++
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---~d~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---IDPDDVQVLCDRAEA 350 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh---cCchHHHHHHHHHHH
Confidence 22345678899999999888874 4552 33 34445566778999999999999884 4565 8888888899
Q ss_pred HHhcCChHHHHHHHHhC
Q 003868 565 LCRAGKFSEAKDVIDSL 581 (790)
Q Consensus 565 ~~~~g~~~~A~~~~~~~ 581 (790)
|.-...+++|+.-|+..
T Consensus 351 ~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 351 YLGDEMYDDAIHDYEKA 367 (504)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 99999999999998886
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.26 E-value=3e-05 Score=73.36 Aligned_cols=136 Identities=18% Similarity=0.124 Sum_probs=109.2
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHH
Q 003868 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL--PFKPSAPIWEA 592 (790)
Q Consensus 515 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 592 (790)
..|+......+-.++...|+-+....+...... ..+.+......++....+.|++.+|...|++. +-++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 456543335566677777888888887777554 33445566667888899999999999999887 44568889999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCC
Q 003868 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652 (790)
Q Consensus 593 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 652 (790)
+..+|.+.|+.+.|...|.+++++.|+++..++.|+..|.-.|+.++|..++......+.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999988865433
No 119
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.25 E-value=0.00016 Score=82.86 Aligned_cols=214 Identities=15% Similarity=0.149 Sum_probs=153.8
Q ss_pred ChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--------CChhHHHHHHHHHHHcCCHHHHHHHHHHhccC-Ch-hHHHHH
Q 003868 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPE--------RDLVSWNAILSAYVSAGLIDEAKSLFEAMRER-NL-LSWTVM 389 (790)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~-~~~~~l 389 (790)
+...|-..|......++++.|++++++... .-.-.|.++++.-...|.-+...++|++..+- |+ ..|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 455666666667777777777777766553 12236777777666667667777777777653 32 467777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCC
Q 003868 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD-SSLSAGNALITMYARCGV 468 (790)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~y~~~g~ 468 (790)
...|.+.+..++|.++|+.|.+. +.-....|...+..+.+...-+.|+.++.++.+.--. ....+..-.+.+-.++|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 78888888888888888888765 3455667777888888888888888888888775211 134455667778889999
Q ss_pred HHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHccCC
Q 003868 469 VEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI--TFLTVLSACNHAGL 534 (790)
Q Consensus 469 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~ 534 (790)
.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-.. .|...+..=...|+
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 9999999998764 356789999999999999999999999999988887653 44444433333343
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.19 E-value=8.1e-05 Score=73.81 Aligned_cols=183 Identities=12% Similarity=0.082 Sum_probs=127.3
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-H---hHH
Q 003868 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD-S-SLSAGNALITMYARCGVVEAANCVFNTMPN--VD-S---VSW 487 (790)
Q Consensus 416 p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~-~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~ 487 (790)
.....+......+...|+++.|...++.+.+..-. + ....+..+...|.+.|++++|...|+++.+ |+ . .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34556777778889999999999999999876421 1 124667889999999999999999998864 21 2 245
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHH
Q 003868 488 NAMIAALGQH--------GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA 559 (790)
Q Consensus 488 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 559 (790)
..+..++.+. |+.++|.+.|+++.+ ..|+..-....+..... ... .. .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~---~~~------~~---------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY---LRN------RL---------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH---HHH------HH---------HHHHH
Confidence 5555666554 789999999999998 46765322211111100 000 00 01123
Q ss_pred HHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 003868 560 RFIDLLCRAGKFSEAKDVIDSL----PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618 (790)
Q Consensus 560 ~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 618 (790)
.+...|.+.|++++|...+++. |..| ....|..+..++...|++++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5667788999999999888776 2223 346788999999999999999998888776555
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.17 E-value=0.0001 Score=83.17 Aligned_cols=190 Identities=13% Similarity=0.089 Sum_probs=139.8
Q ss_pred HHHHHHHHHccCChHHH-HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH----HHHHHHHhcCCCCCHhHHHHHHHHHH
Q 003868 421 FAGAITSCAGLGALENG-RQLHAQLVHSGYDSSLSAGNALITMYARCGVV----EAANCVFNTMPNVDSVSWNAMIAALG 495 (790)
Q Consensus 421 ~~~ll~~~~~~g~~~~a-~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~----~~A~~~~~~~~~~~~~~~~~li~~~~ 495 (790)
+..+=.+.+..|.-+++ .+++.++.+ ++...+..... .++..+.+... .++..+-.|.....
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~La~i~~ 97 (694)
T PRK15179 31 LDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRYP-HTELFQVLVARALE 97 (694)
T ss_pred HhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 33333455666766554 556666543 23333322222 22333333322 25778888888999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHH
Q 003868 496 QHGNGARAIELYEQMLKEGILPDRI-TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574 (790)
Q Consensus 496 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 574 (790)
+.|.+++|+.+++...+ +.||.. ....+..++.+.+.+++|...+++... .-+-+......+..++.+.|++++|
T Consensus 98 ~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~~A 173 (694)
T PRK15179 98 AAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSEQA 173 (694)
T ss_pred HcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchHHH
Confidence 99999999999999999 789885 667778889999999999999999886 4455667888899999999999999
Q ss_pred HHHHHhCC-CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhh
Q 003868 575 KDVIDSLP-FKPS-APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627 (790)
Q Consensus 575 ~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 627 (790)
.++|++.- ..|+ ..+|.++..++...|+.++|...|+++++...+-...|..+
T Consensus 174 ~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 174 DACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 99999873 3444 67899999999999999999999999999866554555443
No 122
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.17 E-value=0.00045 Score=71.23 Aligned_cols=119 Identities=19% Similarity=0.187 Sum_probs=90.9
Q ss_pred HHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHH
Q 003868 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS-APIWEALLAGCRIHGNIDL 605 (790)
Q Consensus 528 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 605 (790)
.+...|.+++|+..++.+.+ ..+-|+.......+.+.+.++..+|.+.++++ ...|+ ...+-.+..++.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 44566788888888888775 34555666667778888888888888888876 44565 5677778888888888888
Q ss_pred HHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHH
Q 003868 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 606 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
|+..++.....+|+|+..|..|+.+|...|+..++..-+.++.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 8888888888888888888888888888887777777666653
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.15 E-value=0.00039 Score=79.29 Aligned_cols=148 Identities=11% Similarity=0.083 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc
Q 003868 455 AGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531 (790)
Q Consensus 455 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 531 (790)
.+..|..+|-+.|+.++|..+++++.+ .|+...|.+.-.|+.. +.++|++++.+.... +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 444455555555555555555555443 2444455555555555 555555555554442 333
Q ss_pred cCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 003868 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611 (790)
Q Consensus 532 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 611 (790)
.+++..+.++|..+.. ..+.+...+-.+.... ....+...-..+|--+-.-|...++++.+..+++
T Consensus 182 ~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki------------~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 182 KKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKV------------LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred hhcchHHHHHHHHHHh--cCcccchHHHHHHHHH------------HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 3445555555555543 1122222221111111 1111112223344444455566666666777777
Q ss_pred HHHhcCCCCCcchHhhHHHHH
Q 003868 612 QLFQLMPHHAGTYVLLSNMYA 632 (790)
Q Consensus 612 ~~~~~~p~~~~~~~~l~~~~~ 632 (790)
.+++.+|.|..+..-++..|.
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH
Confidence 777777666666666666654
No 124
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.15 E-value=8.4e-05 Score=79.79 Aligned_cols=189 Identities=18% Similarity=0.209 Sum_probs=129.8
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 003868 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527 (790)
Q Consensus 448 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 527 (790)
+++|-...-..+...+.++|-...|..+|++. ..|.-.|.+|+..|+..+|..+..+-.+ -+||+.-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 45566666677888888899999999888864 4677778888888888888888888777 4788888888888
Q ss_pred HHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHhCCHHH
Q 003868 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS-LPFKP-SAPIWEALLAGCRIHGNIDL 605 (790)
Q Consensus 528 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~g~~~~ 605 (790)
.....--+++|+++++....+ .-..+.....+.++++++.+.|+. +.+.| -..+|-.+..+..+.++...
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 777777788888887765431 111122222345666666666654 33333 34566666666666667777
Q ss_pred HHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCC
Q 003868 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651 (790)
Q Consensus 606 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 651 (790)
|...|...+.++|++...|+.++-+|.+.|+-.+|...+++..+..
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 7777777777777777777777777777777777776666665543
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.14 E-value=0.00028 Score=79.75 Aligned_cols=143 Identities=14% Similarity=0.124 Sum_probs=117.6
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh-HH
Q 003868 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--V-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT-FL 523 (790)
Q Consensus 448 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~ 523 (790)
.++.+...+-.|.......|..++|+.+++...+ | +...+..++..+.+.+++++|+..+++... ..|+..+ ..
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 4567788899999999999999999999998875 4 456777888999999999999999999998 6788865 55
Q ss_pred HHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 003868 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL--PFKPSAPIWEALL 594 (790)
Q Consensus 524 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll 594 (790)
.+..++.+.|++++|..+|+++.. ..+-+...+..+...+-..|+.++|...|++. ...|....|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 556678899999999999999986 33445788999999999999999999999987 2334444454444
No 126
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.13 E-value=0.00018 Score=68.46 Aligned_cols=154 Identities=8% Similarity=0.113 Sum_probs=113.0
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHH
Q 003868 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEG 538 (790)
Q Consensus 460 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 538 (790)
+-.|.+.|+++.+....+.+..+. ..|...++.++++..+++..+ ..|+. ..|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 456777777776655443322221 012235667888888888777 35544 5788888889999999999
Q ss_pred HHHHHHcccCCCCCCChhHHHHHHHHH-HhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003868 539 RRYFETMHGPYGIPPGEDHYARFIDLL-CRAGK--FSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQL 613 (790)
Q Consensus 539 ~~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 613 (790)
...|+...+ -.+.+...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 93 ~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999998885 2344677888888864 67777 48999999886 4455 5678888888999999999999999999
Q ss_pred HhcCCCCCcchH
Q 003868 614 FQLMPHHAGTYV 625 (790)
Q Consensus 614 ~~~~p~~~~~~~ 625 (790)
+++.|++..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999988765443
No 127
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=4.2e-06 Score=54.33 Aligned_cols=35 Identities=31% Similarity=0.580 Sum_probs=33.1
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCh
Q 003868 115 VFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149 (790)
Q Consensus 115 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 149 (790)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 128
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.08 E-value=0.00011 Score=79.05 Aligned_cols=211 Identities=16% Similarity=0.127 Sum_probs=133.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 003868 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467 (790)
Q Consensus 388 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g 467 (790)
.+...+...|-..+|+.+|++... +..++.+|...|+..+|..+..+..+ -+|+...|..|.+.....-
T Consensus 403 ~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChH
Confidence 455666667777777777776542 44566677777777777777766666 3667777777777766666
Q ss_pred CHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcc
Q 003868 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMH 546 (790)
Q Consensus 468 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 546 (790)
-+++|.++++....+--..|+.+ ...+++++++.+.|+.-.+ +.|-. .+|..+..+..+.++++.|.+.|....
T Consensus 472 ~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 472 LYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 67777777766543311222211 2235777777777776655 34433 466666666667777777777777666
Q ss_pred cCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 003868 547 GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PF-KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616 (790)
Q Consensus 547 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 616 (790)
. +-+-+...|+.+-.+|.+.|+..+|...+++. .. ..+..+|...+-....-|.++.|++++.++.++
T Consensus 547 t--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 547 T--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred h--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 3 33334567777777777777777777777665 21 223345666666666777777777777776655
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.06 E-value=0.00034 Score=66.37 Aligned_cols=153 Identities=12% Similarity=0.118 Sum_probs=97.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHh
Q 003868 489 AMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR 567 (790)
Q Consensus 489 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 567 (790)
.+-..+...|+.+....+..+... ..|.. ......+......|++.+|...|++... .-++|...|+.+.-+|.+
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 344455556666666665555433 12222 2333355666667777777777777665 456667777777777777
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHH
Q 003868 568 AGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645 (790)
Q Consensus 568 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 645 (790)
.|++++|..-|.+. .+.| ++...+.|.-.+.-.||.+.|..++..+....+.+...-..|.-+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777777666554 3333 445566777777777777777777777777777676777777777777777777766543
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.04 E-value=5.5e-05 Score=67.55 Aligned_cols=97 Identities=20% Similarity=0.309 Sum_probs=79.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHH
Q 003868 554 GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631 (790)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 631 (790)
+......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++..|+++..+..++.+|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3455666777788888888888888776 3334 5677888888888889999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 003868 632 ANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 632 ~~~g~~~~a~~~~~~m~~~ 650 (790)
...|++++|.+.++...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999888653
No 131
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.03 E-value=8.1e-06 Score=52.94 Aligned_cols=35 Identities=40% Similarity=0.723 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 003868 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519 (790)
Q Consensus 485 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 519 (790)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.02 E-value=0.00098 Score=68.84 Aligned_cols=140 Identities=18% Similarity=0.156 Sum_probs=114.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH-HHHHccCCHHHHHHHHHHcccCCCCCCC-hhHHHHHHHHHHh
Q 003868 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL-SACNHAGLVKEGRRYFETMHGPYGIPPG-EDHYARFIDLLCR 567 (790)
Q Consensus 490 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 567 (790)
..-.+...|..++|+..++.+.. -.||...|..+. ..+...++.++|.+.++.+... .|+ ....-.+..+|.+
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~ 386 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHh
Confidence 33445567999999999999988 578887666554 5788999999999999999863 555 5666788899999
Q ss_pred cCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHH
Q 003868 568 AGKFSEAKDVIDSL--PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645 (790)
Q Consensus 568 ~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 645 (790)
.|++.+|..+++.. ..+-|+..|..|..+|...|+..++... .+..|.-.|+|++|.....
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLM 449 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHH
Confidence 99999999999886 3345778999999999999998876654 4556788999999999999
Q ss_pred HHHhCC
Q 003868 646 LMRDRG 651 (790)
Q Consensus 646 ~m~~~g 651 (790)
..+++.
T Consensus 450 ~A~~~~ 455 (484)
T COG4783 450 RASQQV 455 (484)
T ss_pred HHHHhc
Confidence 988754
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.98 E-value=0.00014 Score=75.81 Aligned_cols=122 Identities=15% Similarity=0.156 Sum_probs=100.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 003868 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRI 599 (790)
Q Consensus 522 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 599 (790)
..+|+..+...++++.|.++|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345566677788899999999998864 355 3445778888888888999888776 2233 66677777788899
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHH
Q 003868 600 HGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 600 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
.++++.|+.+++++.+..|++..+|..|+.+|...|++++|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999998874
No 134
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=1.1e-05 Score=51.88 Aligned_cols=34 Identities=35% Similarity=0.640 Sum_probs=32.2
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCC
Q 003868 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147 (790)
Q Consensus 114 ~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p 147 (790)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999988
No 135
>PLN02789 farnesyltranstransferase
Probab=97.93 E-value=0.0008 Score=68.90 Aligned_cols=185 Identities=9% Similarity=0.086 Sum_probs=132.2
Q ss_pred HHHHhcCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCC-
Q 003868 461 TMYARCGVVEAANCVFNTMPNV---DSVSWNAMIAALGQHG-NGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGL- 534 (790)
Q Consensus 461 ~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~- 534 (790)
..+.+.+..++|...+..+.+. +..+|+.....+...| ++++++..++++.+. .|+. .+|..-...+.+.|.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCch
Confidence 3344556677777777766542 4456666666666667 579999999999984 5554 355555445555665
Q ss_pred -HHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHh---CCH----H
Q 003868 535 -VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIH---GNI----D 604 (790)
Q Consensus 535 -~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~---g~~----~ 604 (790)
.+++..+++.+.+ .-+-+...|....-++.+.|++++|++.++++ ... .|...|+.....+... |.. +
T Consensus 123 ~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHH
Confidence 3678888888875 34556788888888999999999999999987 333 3667888776666544 222 4
Q ss_pred HHHHHHHHHHhcCCCCCcchHhhHHHHHhc----CChhHHHHHHHHHHh
Q 003868 605 LGIQAAEQLFQLMPHHAGTYVLLSNMYANL----GRWDDAARVRKLMRD 649 (790)
Q Consensus 605 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~ 649 (790)
..+....++++.+|+|..+|..+..++... ++..+|.++..+..+
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 677788899999999999999999999873 345667777766544
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.87 E-value=2.3e-05 Score=50.38 Aligned_cols=33 Identities=27% Similarity=0.646 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003868 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517 (790)
Q Consensus 485 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 517 (790)
.+|+++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 137
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.004 Score=59.20 Aligned_cols=154 Identities=15% Similarity=0.144 Sum_probs=80.0
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc----cCCH
Q 003868 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH----AGLV 535 (790)
Q Consensus 460 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~ 535 (790)
...|.+.|++++|++........+....+ ...+.+..+.+-|.+.+++|++- -+..|.+.|..++.+ .+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhh
Confidence 34455566666666665553322322222 22334455566666666666651 234455555555432 3346
Q ss_pred HHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHH
Q 003868 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL--PFKPSAPIWEALLAGCRIHG-NIDLGIQAAEQ 612 (790)
Q Consensus 536 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~ 612 (790)
.+|.-+|++|.+ ..+|+..+.+...-+....|++++|..++++. ....++.+...++-.-...| +.+--.+...+
T Consensus 190 qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 666666666665 34566666666666666666666666666654 11223444444443333333 33444455556
Q ss_pred HHhcCCCC
Q 003868 613 LFQLMPHH 620 (790)
Q Consensus 613 ~~~~~p~~ 620 (790)
+....|..
T Consensus 268 Lk~~~p~h 275 (299)
T KOG3081|consen 268 LKLSHPEH 275 (299)
T ss_pred HHhcCCcc
Confidence 66666655
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.83 E-value=0.00035 Score=62.25 Aligned_cols=113 Identities=10% Similarity=0.107 Sum_probs=86.1
Q ss_pred HHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 003868 506 LYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PF 583 (790)
Q Consensus 506 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 583 (790)
.|++... ..|+. .....+...+...|++++|.+.|+.+... .+.+...+..+...+.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 45654 34556666777888899998888888752 3446778888888888899999999888876 33
Q ss_pred CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc
Q 003868 584 KP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622 (790)
Q Consensus 584 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 622 (790)
.| +...|..+...+...|+.+.|...++++++..|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 5677888888889999999999999999999998754
No 139
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.0031 Score=59.91 Aligned_cols=148 Identities=9% Similarity=0.027 Sum_probs=97.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHH----HH
Q 003868 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL----LC 566 (790)
Q Consensus 491 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~----~~ 566 (790)
...|...|++++|++..+... ..+. ...=...+.+..+.+-|.+.++.|.+- .+..+.+.|..+ ..
T Consensus 115 a~i~~~~~~~deAl~~~~~~~----~lE~--~Al~VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE----NLEA--AALNVQILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc----hHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhc
Confidence 345677888888888776521 1111 112223345666778888888888742 233444444444 34
Q ss_pred hcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHH-H
Q 003868 567 RAGKFSEAKDVIDSLP--FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAAR-V 643 (790)
Q Consensus 567 ~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~ 643 (790)
-.+...+|.-+|++|. ..|+..+.+-....+...|++++|+.+++.++..+++++.+...++..-...|+-.++.+ .
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 4557888888888883 567777778788888888888888888888888888888888877777777777665543 3
Q ss_pred HHHHH
Q 003868 644 RKLMR 648 (790)
Q Consensus 644 ~~~m~ 648 (790)
..+++
T Consensus 265 l~QLk 269 (299)
T KOG3081|consen 265 LSQLK 269 (299)
T ss_pred HHHHH
Confidence 44443
No 140
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.81 E-value=0.1 Score=58.32 Aligned_cols=159 Identities=14% Similarity=0.114 Sum_probs=87.0
Q ss_pred HHHHHHHHccCChH---HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC----CHhHHHHHHHHH
Q 003868 422 AGAITSCAGLGALE---NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV----DSVSWNAMIAAL 494 (790)
Q Consensus 422 ~~ll~~~~~~g~~~---~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~ 494 (790)
+.++..+-+.++.. +|+-+++.-... -+.|..+--.||..|.-.|-...|.++|..+.-+ |...|- +..-+
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~ 517 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRA 517 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHH
Confidence 34566677777665 344444443333 2445566677889999999999999999987632 333332 22344
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHH---HHHHcccCCCCCCChhHHHHHHHHHHhcCC
Q 003868 495 GQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRR---YFETMHGPYGIPPGEDHYARFIDLLCRAGK 570 (790)
Q Consensus 495 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~---~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 570 (790)
...|++..+...++...+- ..-+. .+-..+..|| +.|.+.+..+ .=+++... .-.....+-+..++.++..++
T Consensus 518 ~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S-~q~~a~~VE~~~l~ll~~~~~ 594 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHS-LQKWACRVENLQLSLLCNADR 594 (932)
T ss_pred HhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCc
Confidence 5567777777776665441 01111 1222222333 3344443333 22233221 111122344567778888899
Q ss_pred hHHHHHHHHhCCCCC
Q 003868 571 FSEAKDVIDSLPFKP 585 (790)
Q Consensus 571 ~~~A~~~~~~~~~~p 585 (790)
.++-...+..|.++|
T Consensus 595 ~~q~~~~~~~~~l~~ 609 (932)
T KOG2053|consen 595 GTQLLKLLESMKLPP 609 (932)
T ss_pred HHHHHHHHhccccCc
Confidence 888888888875443
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.76 E-value=0.00064 Score=71.02 Aligned_cols=127 Identities=13% Similarity=0.083 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHcc
Q 003868 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHA 532 (790)
Q Consensus 454 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~ 532 (790)
....+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++..+. .|+. ..+......|...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 344455666666778888888888887766666666777777778888888888888763 4433 3444445557788
Q ss_pred CCHHHHHHHHHHcccCCCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 003868 533 GLVKEGRRYFETMHGPYGIPP-GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP 585 (790)
Q Consensus 533 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 585 (790)
++.+.|..+.+++.+ ..| +..+|..|...|.+.|++++|+-.++.+|.-+
T Consensus 248 ~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 248 KKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 888888888888875 344 45688888888888888888888888887443
No 142
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.75 E-value=0.0057 Score=70.11 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=57.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC
Q 003868 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499 (790)
Q Consensus 420 t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 499 (790)
.+..+..+|.+.|+.+++..+++++++.. +.++.+.|-+...|+.. ++++|.+++.+. +..|...++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq 184 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQ 184 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhc
Confidence 44444445555555555555555555544 44455555555555555 555555554432 222444455
Q ss_pred hHHHHHHHHHHHHcCCCCChh---------------------hHHHHHHHHHccCCHHHHHHHHHHccc
Q 003868 500 GARAIELYEQMLKEGILPDRI---------------------TFLTVLSACNHAGLVKEGRRYFETMHG 547 (790)
Q Consensus 500 ~~~A~~~~~~m~~~g~~p~~~---------------------t~~~ll~a~~~~g~~~~a~~~~~~~~~ 547 (790)
+..+.++|.++.. ..|+.+ ++..+-..|...++++++..+++.+.+
T Consensus 185 ~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 185 YVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred chHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence 5555555555555 334332 222333344455556666666666553
No 143
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.75 E-value=0.068 Score=54.71 Aligned_cols=122 Identities=17% Similarity=0.231 Sum_probs=91.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCH
Q 003868 456 GNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535 (790)
Q Consensus 456 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 535 (790)
.+..+.-+...|+...|.++-.+..-||-.-|...+.+++..|+|++-.++... +-.++.|...+.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344456667789999999998888889999999999999999999877765432 23458899999999999999
Q ss_pred HHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003868 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597 (790)
Q Consensus 536 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 597 (790)
.+|..+...+. +..-+.+|.++|++.+|.+.--+.+ |...+..+...|
T Consensus 254 ~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 254 KEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 99999888632 2456788899999999877755542 444444444333
No 144
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.0015 Score=61.49 Aligned_cols=180 Identities=16% Similarity=0.165 Sum_probs=137.0
Q ss_pred cCCHHHHHHHHhcCCC--------CCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH-HHHccCCH
Q 003868 466 CGVVEAANCVFNTMPN--------VDS-VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS-ACNHAGLV 535 (790)
Q Consensus 466 ~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~ 535 (790)
..+.++..+++..+.. ++. ..|..++-+....|+.+.|...++++... + |.+.-...+=. -+...|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 4578888888887653 222 23444555666788999999999998875 3 66643222222 24557899
Q ss_pred HHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003868 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL--PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613 (790)
Q Consensus 536 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 613 (790)
++|.++++.+.++ -+.|..+|..-+-++-..|+--+|++-+.+. .+..|...|.-|...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999874 3666778887777777888877888776654 35678999999999999999999999999999
Q ss_pred HhcCCCCCcchHhhHHHHHhcC---ChhHHHHHHHHHHh
Q 003868 614 FQLMPHHAGTYVLLSNMYANLG---RWDDAARVRKLMRD 649 (790)
Q Consensus 614 ~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~ 649 (790)
+-..|-++..+..++..+.-.| +.+-|.+++.+..+
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999887766 45667788887765
No 145
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.70 E-value=4.4e-05 Score=47.79 Aligned_cols=31 Identities=32% Similarity=0.620 Sum_probs=27.2
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 003868 115 VFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145 (790)
Q Consensus 115 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~ 145 (790)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999988774
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.66 E-value=0.00044 Score=56.70 Aligned_cols=92 Identities=21% Similarity=0.349 Sum_probs=74.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcC
Q 003868 558 YARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLG 635 (790)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 635 (790)
+..+...+...|++++|.+.+++. ...| +...|..+...+...|+++.|...++++....|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777888888888888775 3334 34667777888888899999999999999988888888889999999999
Q ss_pred ChhHHHHHHHHHHh
Q 003868 636 RWDDAARVRKLMRD 649 (790)
Q Consensus 636 ~~~~a~~~~~~m~~ 649 (790)
++++|.+.+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999998887754
No 147
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.63 E-value=0.00013 Score=56.02 Aligned_cols=64 Identities=23% Similarity=0.303 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcC-ChhHHHHHHHHHHh
Q 003868 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLG-RWDDAARVRKLMRD 649 (790)
Q Consensus 586 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 649 (790)
++.+|..+...+...|++++|+..|+++++.+|+++..|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999 79999999998764
No 148
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.0059 Score=57.67 Aligned_cols=174 Identities=16% Similarity=0.216 Sum_probs=128.5
Q ss_pred CCCch-hHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 003868 449 YDSSL-SAGNALITMYARCGVVEAANCVFNTMPN--VD---SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF 522 (790)
Q Consensus 449 ~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 522 (790)
..++. .+|..++-+...+|+.+.|...++.+.. |. +.-..+ .-+-..|++++|+++++...+.. +-|.+++
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lka--m~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~ 123 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKA--MLLEATGNYKEAIEYYESLLEDD-PTDTVIR 123 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHH--HHHHHhhchhhHHHHHHHHhccC-cchhHHH
Confidence 34443 4566667777788999999999988654 22 222222 22445789999999999999864 4455677
Q ss_pred HHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh
Q 003868 523 LTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIH 600 (790)
Q Consensus 523 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 600 (790)
-.-+...-..|.--+|++-+....+ .+..|.+.|.-+.+.|...|+++.|.--++++ -..| ++..+..+...+...
T Consensus 124 KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~ 201 (289)
T KOG3060|consen 124 KRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQ 201 (289)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 7767677777888888888888876 57889999999999999999999999999997 3455 445556666655433
Q ss_pred ---CCHHHHHHHHHHHHhcCCCCCcchHhh
Q 003868 601 ---GNIDLGIQAAEQLFQLMPHHAGTYVLL 627 (790)
Q Consensus 601 ---g~~~~a~~~~~~~~~~~p~~~~~~~~l 627 (790)
.+.+.+.+.|.+++++.|.+...+..+
T Consensus 202 gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 202 GGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred hhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 477899999999999999665544444
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.61 E-value=0.0027 Score=57.22 Aligned_cols=122 Identities=23% Similarity=0.269 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCCh--hHHHH
Q 003868 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDR----ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE--DHYAR 560 (790)
Q Consensus 487 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~ 560 (790)
|..++..+ ..++...+...++++.+. .|+. .....+...+...|++++|...|+.+... ...|.. .....
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 33344444 356666666666666663 2333 12333444556666666666666666653 211111 12233
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003868 561 FIDLLCRAGKFSEAKDVIDSLPFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQ 612 (790)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 612 (790)
|...+...|++++|+..++..+..+ ....+......+...|+.++|...|++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4555566666666666665542111 223334444445555555555555544
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.58 E-value=0.0012 Score=59.65 Aligned_cols=124 Identities=19% Similarity=0.197 Sum_probs=90.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHcccCCCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCH----HHHHHHHH
Q 003868 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPP-GEDHYARFIDLLCRAGKFSEAKDVIDSLP-FKPSA----PIWEALLA 595 (790)
Q Consensus 522 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~ll~ 595 (790)
|..++.+. ..++...+...++.+.+.++-.| .....-.+...+...|++++|...|+... ..||. .....|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33344444 47888999888999887533221 12344456688899999999999999872 22443 24556777
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHH
Q 003868 596 GCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647 (790)
Q Consensus 596 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 647 (790)
.+...|++++|+..++.. ...+-.+..+..++++|.+.|++++|...|++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 888999999999999763 233345567889999999999999999999864
No 151
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.58 E-value=8.2e-05 Score=46.53 Aligned_cols=31 Identities=29% Similarity=0.618 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003868 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGI 515 (790)
Q Consensus 485 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 515 (790)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.55 E-value=7.6e-05 Score=60.02 Aligned_cols=78 Identities=19% Similarity=0.354 Sum_probs=52.0
Q ss_pred cCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHH
Q 003868 568 AGKFSEAKDVIDSL----PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARV 643 (790)
Q Consensus 568 ~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 643 (790)
.|++++|+.+++++ +..++...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35666676666665 2112444566677777777777777777777 666666666666778888888888888887
Q ss_pred HHH
Q 003868 644 RKL 646 (790)
Q Consensus 644 ~~~ 646 (790)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.54 E-value=0.00099 Score=57.70 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---CcchHhhHH
Q 003868 558 YARFIDLLCRAGKFSEAKDVIDSL-PFKPS----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH---AGTYVLLSN 629 (790)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 629 (790)
+-.++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...+++++...|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 444555555666666666666554 11222 2344455666666666666666666666666554 344566666
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 003868 630 MYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 630 ~~~~~g~~~~a~~~~~~m~~~ 650 (790)
++.+.|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666666543
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.49 E-value=0.0013 Score=68.98 Aligned_cols=84 Identities=17% Similarity=0.196 Sum_probs=42.2
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHH
Q 003868 565 LCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAAR 642 (790)
Q Consensus 565 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 642 (790)
+...|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++|.+
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 33444555555554443 2222 333444444555555555555555555555555555555555555555555555555
Q ss_pred HHHHHH
Q 003868 643 VRKLMR 648 (790)
Q Consensus 643 ~~~~m~ 648 (790)
.+++..
T Consensus 92 ~~~~al 97 (356)
T PLN03088 92 ALEKGA 97 (356)
T ss_pred HHHHHH
Confidence 555544
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.47 E-value=0.0015 Score=56.51 Aligned_cols=103 Identities=12% Similarity=0.121 Sum_probs=65.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHcccCCCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 003868 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPP-GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS----APIWEALLA 595 (790)
Q Consensus 522 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~ 595 (790)
+..+...+...|++++|...|..+.+.+.-.+ ....+..+...+.+.|++++|.+.++.+ ...|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 44445555556666666666666654211111 1234555666777777777777777665 22222 456777777
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCCcch
Q 003868 596 GCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624 (790)
Q Consensus 596 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 624 (790)
.+...|+.+.|...++++++..|+++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 78888888888888888888888875543
No 156
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.43 E-value=0.00028 Score=53.41 Aligned_cols=57 Identities=25% Similarity=0.334 Sum_probs=43.6
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 593 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+...+...|++++|+..++++++..|+++..+..++.++...|++++|.++++++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567778888888888888888888888888888888888888888888887754
No 157
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.40 E-value=0.00076 Score=67.51 Aligned_cols=129 Identities=11% Similarity=0.055 Sum_probs=95.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHH---cccCCCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-------CC-CCCHH
Q 003868 521 TFLTVLSACNHAGLVKEGRRYFET---MHGPYGIPPG-EDHYARFIDLLCRAGKFSEAKDVIDSL-------PF-KPSAP 588 (790)
Q Consensus 521 t~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~-~p~~~ 588 (790)
.|..|...|.-.|+++.|+..++. +.+.||-... ...+..|...+.-.|+++.|.+.++.. +. .-...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 566666667778899999887664 2233444332 356778888999999999999988754 21 22455
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 589 IWEALLAGCRIHGNIDLGIQAAEQLFQL------MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 589 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+..+|.++|....+++.|+.++.+=+.+ .-....++..|+++|...|..++|..+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 7788999999999999999998875443 123457899999999999999999988776643
No 158
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.39 E-value=0.25 Score=52.14 Aligned_cols=424 Identities=11% Similarity=0.142 Sum_probs=245.3
Q ss_pred CCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCCC---CeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcch
Q 003868 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER---DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258 (790)
Q Consensus 182 ~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 258 (790)
+-|...|+.||.-+.. .-+++++..++++..+ ....|..-|.+-....+++...++|.+-..
T Consensus 17 P~di~sw~~lire~qt----------~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv----- 81 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQT----------QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV----- 81 (656)
T ss_pred CccHHHHHHHHHHHcc----------CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH-----
Confidence 4567778888876654 6789999999988753 667899999999999999999999997522
Q ss_pred hhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHc-cCChHH----HHHHHHHHHHhcCCCCCCC-ChhHHHHHHHH--
Q 003868 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACAN-SGLFRL----GKQVHAYLLRTEAKPTPEF-SLPVNNALVTL-- 330 (790)
Q Consensus 259 ~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~-~~~~~~----a~~~~~~~~~~~~~~~~~~-~~~~~~~li~~-- 330 (790)
.- .+...|...|+--.+ .++... ..+.++..+.. .|.++ +...|+..++.
T Consensus 82 -----------------kv--LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~k---ig~di~s~siW~eYi~FL~ 139 (656)
T KOG1914|consen 82 -----------------KV--LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEK---IGMDIKSYSIWDEYINFLE 139 (656)
T ss_pred -----------------HH--hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHH---hccCcccchhHHHHHHHHH
Confidence 11 223333333333221 122222 22333333332 23221 23345555443
Q ss_pred -------HHHCCCHHHHHHHHhhCCC-C---------ChhHHHHHHHHH-------HHcCCHHHHHHHHHHhcc------
Q 003868 331 -------YWKCGKVNEARDIFNQMPE-R---------DLVSWNAILSAY-------VSAGLIDEAKSLFEAMRE------ 380 (790)
Q Consensus 331 -------~~~~g~~~~A~~~f~~m~~-~---------~~~~~~~li~~~-------~~~g~~~~A~~~~~~m~~------ 380 (790)
|....+++..++++.++.. | |-..|..=|+.. -+...+..|.++++++..
T Consensus 140 ~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~ 219 (656)
T KOG1914|consen 140 GVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLN 219 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhc
Confidence 3344467777888888764 1 222222222211 112334455555555431
Q ss_pred CC---------------hhHHHHHHHHHHhcCCh--------HHHHHHHHH-HHHcCCCCCHHHHH-HHH----HHHHcc
Q 003868 381 RN---------------LLSWTVMISGLAQNGYG--------EEGLKLFSQ-MRLEGFKPCDYAFA-GAI----TSCAGL 431 (790)
Q Consensus 381 ~~---------------~~~~~~li~~~~~~g~~--------~~A~~~~~~-m~~~g~~p~~~t~~-~ll----~~~~~~ 431 (790)
.+ +..|-.+|..=..++.- ....-.+++ |.-.+..|+..-.. ..+ +.+...
T Consensus 220 r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~ 299 (656)
T KOG1914|consen 220 RNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEK 299 (656)
T ss_pred ccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHh
Confidence 00 12355555433222211 111222222 23334455443211 111 123333
Q ss_pred CC-------hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhcCCC----CCHhHHHHHHHHHHhc
Q 003868 432 GA-------LENGRQLHAQLVHSGYDSSLSAGNALITMYARCG---VVEAANCVFNTMPN----VDSVSWNAMIAALGQH 497 (790)
Q Consensus 432 g~-------~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~ 497 (790)
|+ -+++..+++..+..-...+..+|.++.+.--..- ..+.....+++... .-..+|-.+++.-.+.
T Consensus 300 ~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~ 379 (656)
T KOG1914|consen 300 GDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRA 379 (656)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHh
Confidence 43 3455666666655544445555555544322211 24444455554432 2234677778888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHH
Q 003868 498 GNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576 (790)
Q Consensus 498 g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 576 (790)
.-...|..+|.+..+.+..+-. ..+.+++. |..+++.+-|.++|+.=.+.+|- +...-.+.++-+...++-..|..
T Consensus 380 eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~ 456 (656)
T KOG1914|consen 380 EGLKAARKIFKKAREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARA 456 (656)
T ss_pred hhHHHHHHHHHHHhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHH
Confidence 8899999999999999888844 45555555 44568999999999987765443 44555688899999999999999
Q ss_pred HHHhCC---CCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC----cchHhhHHHHHhcCChhHHHHHHH
Q 003868 577 VIDSLP---FKPS--APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA----GTYVLLSNMYANLGRWDDAARVRK 645 (790)
Q Consensus 577 ~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~ 645 (790)
+|++.- +.|+ ..+|..++.--..-||...+.++-++.....|.+. ..-..+.+-|.=.+.+..-..-++
T Consensus 457 LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk 534 (656)
T KOG1914|consen 457 LFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELK 534 (656)
T ss_pred HHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHH
Confidence 999872 3343 46899999999999999999999998887766321 223455556665555543333333
No 159
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.37 E-value=0.0067 Score=66.62 Aligned_cols=63 Identities=25% Similarity=0.229 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 586 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+..++.++.-.....|++++|...++++++++| +..+|..++.+|...|+.++|.+.+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334455554444455666666666666666666 345666666666666666666666666544
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.34 E-value=0.0021 Score=59.93 Aligned_cols=82 Identities=16% Similarity=0.145 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHH
Q 003868 555 EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629 (790)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 629 (790)
...+..+...+.+.|++++|...|++. ...|+ ...|..+...+...|+++.|+..++++++..|.+...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 344556666677777777777777654 11221 3567788888888899999999999999988888888888888
Q ss_pred HHHhcCC
Q 003868 630 MYANLGR 636 (790)
Q Consensus 630 ~~~~~g~ 636 (790)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.34 E-value=0.0019 Score=59.94 Aligned_cols=94 Identities=12% Similarity=-0.042 Sum_probs=75.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhH
Q 003868 554 GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628 (790)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 628 (790)
....|..++..+...|++++|...|++. ...|+ ..+|..+...+...|++++|+..+++++++.|....++..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 4556677777888889999999988876 22222 347888999999999999999999999999999988888888
Q ss_pred HHHH-------hcCChhHHHHHHHHH
Q 003868 629 NMYA-------NLGRWDDAARVRKLM 647 (790)
Q Consensus 629 ~~~~-------~~g~~~~a~~~~~~m 647 (790)
.+|. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 788888777666654
No 162
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.29 E-value=0.0017 Score=63.00 Aligned_cols=99 Identities=14% Similarity=0.124 Sum_probs=67.5
Q ss_pred HHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHH
Q 003868 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS-APIWEALLAGCRIHGNIDLG 606 (790)
Q Consensus 529 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a 606 (790)
..+.+++++|+..|.++++ -.+-|...|..-..+|.+.|.++.|.+-.+.. .+.|. ...|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3455667777777777664 22334555666667777777777777665554 44554 35788888888888888888
Q ss_pred HHHHHHHHhcCCCCCcchHhhHH
Q 003868 607 IQAAEQLFQLMPHHAGTYVLLSN 629 (790)
Q Consensus 607 ~~~~~~~~~~~p~~~~~~~~l~~ 629 (790)
++.|+++++++|++......|-.
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHH
Confidence 88888888888888644444433
No 163
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.27 E-value=0.0053 Score=62.14 Aligned_cols=133 Identities=14% Similarity=0.255 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHH
Q 003868 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA-CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563 (790)
Q Consensus 485 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 563 (790)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467788888888888999999999988532 2233444444443 33456777799999998874 5667788889999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 003868 564 LLCRAGKFSEAKDVIDSL-PFKPS----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 620 (790)
.+.+.|+.+.|..+|++. ..-|. ..+|...+..=.+.|+.+....+.+++.+..|++
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999886 22233 3589999999999999999999999999998875
No 164
>PRK15331 chaperone protein SicA; Provisional
Probab=97.27 E-value=0.0058 Score=54.42 Aligned_cols=88 Identities=13% Similarity=0.135 Sum_probs=75.7
Q ss_pred HHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhH
Q 003868 562 IDLLCRAGKFSEAKDVIDSLP-F-KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639 (790)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 639 (790)
.--+...|++++|..+|+-+- . .-+..-|..|...|...++++.|+..|..+..+.++|+..+...+..|...|+.++
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 334557899999999888651 2 23566788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 003868 640 AARVRKLMRD 649 (790)
Q Consensus 640 a~~~~~~m~~ 649 (790)
|+..|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 165
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0057 Score=61.77 Aligned_cols=264 Identities=12% Similarity=0.019 Sum_probs=158.2
Q ss_pred HHHHHHcCCHHHHHHHHHHhcc---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCh
Q 003868 359 LSAYVSAGLIDEAKSLFEAMRE---RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD-YAFAGAITSCAGLGAL 434 (790)
Q Consensus 359 i~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~ 434 (790)
-..+.+...+..|+..+....+ .+..-|..-...+...|++++|+--.+.-.+ ++|.. .+..-.-.++...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhhhhHHH
Confidence 3455566666677766666554 2344566666666666666666655544433 22221 1233333333333444
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CCHhHHHHH-HHHHHhcCChHHHHHHHH
Q 003868 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN-----VDSVSWNAM-IAALGQHGNGARAIELYE 508 (790)
Q Consensus 435 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~l-i~~~~~~g~~~~A~~~~~ 508 (790)
.+|.+.++ +...| ....|...++.... |.-.+|-.+ ..++...|++++|...--
T Consensus 134 i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 134 IEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred HHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 44443333 00000 11112222222211 222344433 245566888888888777
Q ss_pred HHHHcCCCCChhhHHHHHH--HHHccCCHHHHHHHHHHcccCCCCCCChhHHH-------------HHHHHHHhcCChHH
Q 003868 509 QMLKEGILPDRITFLTVLS--ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA-------------RFIDLLCRAGKFSE 573 (790)
Q Consensus 509 ~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-------------~li~~~~~~g~~~~ 573 (790)
..++. .++.. +..+++ ++...++.+.|...|++... ..|+...-. .=.....+.|++.+
T Consensus 194 ~ilkl--d~~n~-~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 194 DILKL--DATNA-EALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK 267 (486)
T ss_pred HHHhc--ccchh-HHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence 76663 33321 222222 34456788888888888663 344432211 11234678999999
Q ss_pred HHHHHHhC-CCC-----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHH
Q 003868 574 AKDVIDSL-PFK-----PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647 (790)
Q Consensus 574 A~~~~~~~-~~~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 647 (790)
|.+.+.+. .+. |+...|........+.|+.++|+...+++++++|.-...|..-++++...++|++|.+.+++.
T Consensus 268 A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 268 AYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999875 444 445566666667788899999999999999999999999999999999999999999999988
Q ss_pred HhC
Q 003868 648 RDR 650 (790)
Q Consensus 648 ~~~ 650 (790)
.+.
T Consensus 348 ~q~ 350 (486)
T KOG0550|consen 348 MQL 350 (486)
T ss_pred Hhh
Confidence 654
No 166
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.26 E-value=0.0031 Score=51.49 Aligned_cols=62 Identities=21% Similarity=0.317 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 003868 557 HYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618 (790)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 618 (790)
.+..+...+...|++++|.+.+++. ...| +..+|..+...+...|+.+.|...++++++..|
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 3334444444445555555544442 1112 223455555556666666666666666655544
No 167
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.25 E-value=0.54 Score=52.89 Aligned_cols=508 Identities=13% Similarity=0.086 Sum_probs=246.0
Q ss_pred cCChhHHHHHhhhCCC--CChHHHHHHHHHH--hcCCChHHHHHHHhhCCCC-CCCcchHHHHHHHHHhCCCchHHHHHH
Q 003868 63 SLKLVYARTLFDEIPQ--PDIVARTTLIAAY--SASDNVKLAREMFNKTPLK-MRDTVFYNAMITAYSHNSNGHAAIELF 137 (790)
Q Consensus 63 ~~~~~~A~~~~~~~~~--~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~-~~~~~~~n~li~~~~~~g~~~~A~~~~ 137 (790)
.+++..|.+....+.+ ||. .|...+.++ .+.|+.++|..+++..... ..|..|..++-..|.+.+..++|..+|
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4555666555555443 443 344555554 5788999999888876554 357778888889999999999999999
Q ss_pred HHhhhCCCCCChhhHHHHHHHHhcchh-hhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHH
Q 003868 138 RDMRRDDVKPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216 (790)
Q Consensus 138 ~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~ 216 (790)
++... ..|+......++.++.+.++ ..-. ..|.++
T Consensus 101 e~~~~--~~P~eell~~lFmayvR~~~yk~qQ------------------------------------------kaa~~L 136 (932)
T KOG2053|consen 101 ERANQ--KYPSEELLYHLFMAYVREKSYKKQQ------------------------------------------KAALQL 136 (932)
T ss_pred HHHHh--hCCcHHHHHHHHHHHHHHHHHHHHH------------------------------------------HHHHHH
Confidence 98875 46777777777777777655 2111 123333
Q ss_pred HccCCCCCeeeHHHHHHHHHh-CCCh---------hHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHH
Q 003868 217 FDEMPERDELSWTTMMTGYVK-NDYL---------DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYT 286 (790)
Q Consensus 217 f~~~~~~~~~~~~~li~~~~~-~g~~---------~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~ 286 (790)
++..+.+--.-|+.+ +.+.+ .... .-|.+.++.+.+ ..|-.-+..-..
T Consensus 137 yK~~pk~~yyfWsV~-Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~---------------------~~gk~~s~aE~~ 194 (932)
T KOG2053|consen 137 YKNFPKRAYYFWSVI-SLILQSIFSENELLDPILLALAEKMVQKLLE---------------------KKGKIESEAEII 194 (932)
T ss_pred HHhCCcccchHHHHH-HHHHHhccCCcccccchhHHHHHHHHHHHhc---------------------cCCccchHHHHH
Confidence 333333222223221 11111 1111 123334444321 112111222233
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHc-
Q 003868 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA- 365 (790)
Q Consensus 287 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~- 365 (790)
.-+..+...|..++|..++..-... .-...+...-+--++.+.+.+++.+..++-.++..++..-|...+..+.+.
T Consensus 195 Lyl~iL~~~~k~~eal~~l~~~la~---~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klL 271 (932)
T KOG2053|consen 195 LYLLILELQGKYQEALEFLAITLAE---KLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLL 271 (932)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHH---hccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence 3344455678899999888333221 333345556677788999999998877766665542222144444332211
Q ss_pred ---------------CCHHHHHHHHHHhccC-ChhHHHHHHHH---HHhcCChHHHHHHHHHHHHcCCCCCH--------
Q 003868 366 ---------------GLIDEAKSLFEAMRER-NLLSWTVMISG---LAQNGYGEEGLKLFSQMRLEGFKPCD-------- 418 (790)
Q Consensus 366 ---------------g~~~~A~~~~~~m~~~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~-------- 418 (790)
+..+...+...+.... .--.|-+-+.. +-.-|+.++++..|-+- -|-+|--
T Consensus 272 e~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k--fg~kpcc~~Dl~~yl 349 (932)
T KOG2053|consen 272 ELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK--FGDKPCCAIDLNHYL 349 (932)
T ss_pred HhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH--hCCCcHhHhhHHHhh
Confidence 1112222222222211 11223333333 33457777766554322 2223311
Q ss_pred -----HHHHHHHHHHHccC-ChHHHHHHHHH---HHH----hC----CCCch--hHHHHHHHHHHhcCCHHHHHHHHh-c
Q 003868 419 -----YAFAGAITSCAGLG-ALENGRQLHAQ---LVH----SG----YDSSL--SAGNALITMYARCGVVEAANCVFN-T 478 (790)
Q Consensus 419 -----~t~~~ll~~~~~~g-~~~~a~~i~~~---~~~----~g----~~~~~--~~~~~li~~y~~~g~~~~A~~~~~-~ 478 (790)
--...++..+.... +.....+.+.+ ..+ .| ++.|. ..+..++-.|++. .+-...+.. +
T Consensus 350 ~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~g--ls~~K~ll~TE 427 (932)
T KOG2053|consen 350 GHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKG--LSLSKDLLPTE 427 (932)
T ss_pred ccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcc--ccccccccccc
Confidence 11122333322211 11111111111 000 01 11110 0111122222211 000000000 0
Q ss_pred CCCCC---HhHHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCC
Q 003868 479 MPNVD---SVSWNAMIAALGQHGNGA---RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552 (790)
Q Consensus 479 ~~~~~---~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 552 (790)
+..-+ .-+-+.|+..+.+.++.. +|+-+++.-... -+-|..+-..+|..|+-.|-+..|.+.|..+.-+ .+.
T Consensus 428 ~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ 505 (932)
T KOG2053|consen 428 YSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQ 505 (932)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-Hhh
Confidence 00001 123567788888887765 344444443332 1234456677888888889999999998888654 555
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC----CCcchH
Q 003868 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSLP--FKPSA-PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH----HAGTYV 625 (790)
Q Consensus 553 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~ 625 (790)
.|..-|- +...+...|++..|...+...- ...+. .+-. ++..-.++|.+.+-.+...---.++-. -..+-+
T Consensus 506 ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e-yI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~ 583 (932)
T KOG2053|consen 506 TDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPE-YIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVEN 583 (932)
T ss_pred hccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHH-HHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543332 3344556777777776665531 00011 1111 222233556655444332211111111 122334
Q ss_pred hhHHHHHhcCChhHHHHHHHHHH
Q 003868 626 LLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 626 ~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
.........++.++-.+.+..|+
T Consensus 584 ~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 584 LQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHhCCcHHHHHHHHhccc
Confidence 66777778888888888888776
No 168
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.25 E-value=0.31 Score=50.02 Aligned_cols=107 Identities=18% Similarity=0.269 Sum_probs=62.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCh
Q 003868 355 WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434 (790)
Q Consensus 355 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 434 (790)
.+..|.-+...|+...|.++-.+..-++-..|...+.+|+..+++++-..+... +-.+..|..++.+|.+.|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 333444455555555555555555555555566666666666666655543321 11235666777777777777
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 003868 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477 (790)
Q Consensus 435 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 477 (790)
.+|..+...+ .+..-+.+|.++|++.+|.+.--
T Consensus 254 ~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 254 KEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 6666665541 12456788888888888866533
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.23 E-value=0.0038 Score=65.61 Aligned_cols=102 Identities=15% Similarity=0.079 Sum_probs=62.3
Q ss_pred HHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHH
Q 003868 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLG 606 (790)
Q Consensus 529 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 606 (790)
+...|++++|+.+|+++.+ ..+.+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|+++.|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 3445566666666665554 22233455556666666666666666666654 3334 445666677777777777777
Q ss_pred HHHHHHHHhcCCCCCcchHhhHHHHH
Q 003868 607 IQAAEQLFQLMPHHAGTYVLLSNMYA 632 (790)
Q Consensus 607 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 632 (790)
+..++++++++|+++.....+..+..
T Consensus 90 ~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 90 KAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 77777777777777666655544433
No 170
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.23 E-value=0.3 Score=49.47 Aligned_cols=271 Identities=19% Similarity=0.188 Sum_probs=175.6
Q ss_pred cCCHHHHHHHHHHhc---cCChhHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCChHHH
Q 003868 365 AGLIDEAKSLFEAMR---ERNLLSWTVMISGL--AQNGYGEEGLKLFSQMRLEGFKPCDY--AFAGAITSCAGLGALENG 437 (790)
Q Consensus 365 ~g~~~~A~~~~~~m~---~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a 437 (790)
.|+-..|.++-.+.. ..|....-.++.+- .-.|+++.|.+-|+.|... |... -+..|.-..-+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 344445554444332 22333333333332 3367788888888888752 2221 233444445577888888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCCHh--HHHHHHHHHHh---cCChHHHHHHH
Q 003868 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-----NVDSV--SWNAMIAALGQ---HGNGARAIELY 507 (790)
Q Consensus 438 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~~---~g~~~~A~~~~ 507 (790)
+++-+..-..- +.-.-...+++...+..|+++.|+++.+.-. ++++. .-..|+.+-+. .-+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88877766553 2234566788888999999999999988554 24432 22233332221 34566777766
Q ss_pred HHHHHcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHH--HH--HHHHhCC
Q 003868 508 EQMLKEGILPDRI-TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE--AK--DVIDSLP 582 (790)
Q Consensus 508 ~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~--A~--~~~~~~~ 582 (790)
.+..+ +.||.+ .-.....++.+.|++.++-.+++.+-+. .|.+..+...+ +.|.|+-.. .. +-++.|
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~sl- 324 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDTALDRLKRAKKLESL- 324 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhc-
Confidence 66666 788875 4445567889999999999999999754 66666543333 345554322 11 123333
Q ss_pred CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhc-CChhHHHHHHHHHHh
Q 003868 583 FKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL-GRWDDAARVRKLMRD 649 (790)
Q Consensus 583 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 649 (790)
+| +.....++..+-...|++..|..-.+.+....|.. ..|..|.++-... |+-.++...+.+..+
T Consensus 325 -k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 325 -KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred -CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 45 45566777888889999999999999999999877 7899999988655 999999999888765
No 171
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.21 E-value=0.00086 Score=64.99 Aligned_cols=88 Identities=20% Similarity=0.297 Sum_probs=78.3
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhH
Q 003868 562 IDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639 (790)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 639 (790)
..-+.+.+++++|...|.+. .+.| |++.|..=..+|.+.|.++.|.+..+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34467889999999999886 6666 566677778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 003868 640 AARVRKLMRD 649 (790)
Q Consensus 640 a~~~~~~m~~ 649 (790)
|.+.|++..+
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 9999998765
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.20 E-value=0.0068 Score=56.49 Aligned_cols=131 Identities=18% Similarity=0.200 Sum_probs=87.3
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHH
Q 003868 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD--RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560 (790)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 560 (790)
....+..+...+...|++++|...|++..+....|+ ...+..+...+.+.|++++|...+++..+. .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 344566677777788888888888888876432222 246777777888888888888888887752 2234556666
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCC
Q 003868 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636 (790)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 636 (790)
+...|...|+...+..-++.. ...++.|.+.++++++.+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 777777777766654333221 122677888999999988887 5555555555554
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.15 E-value=0.018 Score=53.45 Aligned_cols=81 Identities=11% Similarity=0.065 Sum_probs=51.8
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHH
Q 003868 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD--RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF 561 (790)
Q Consensus 484 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 561 (790)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|...++...+. .+.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 44566667777778888888888888876422221 136667777777888888888888777642 22233445555
Q ss_pred HHHHH
Q 003868 562 IDLLC 566 (790)
Q Consensus 562 i~~~~ 566 (790)
...+.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55554
No 174
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.14 E-value=0.00051 Score=52.52 Aligned_cols=52 Identities=23% Similarity=0.392 Sum_probs=45.4
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 598 RIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 598 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
...|++++|+..++++++.+|++...+..++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999887764
No 175
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.13 E-value=0.0014 Score=49.52 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=49.3
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 003868 561 FIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456678889999999998886 4445 556888899999999999999999999999999874
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.09 E-value=0.045 Score=55.63 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----h-hhHHHHHHHHHccCCHHHHHHHHHHcccC-CCCCCC--hh
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPD-----R-ITFLTVLSACNHAGLVKEGRRYFETMHGP-YGIPPG--ED 556 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~--~~ 556 (790)
.+..+...+.+.|++++|.++|++....-...+ . ..|...+-++...|++..|.+.|+..... .++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 445567778888999999999988876433222 1 12334444666788899999988887643 133333 23
Q ss_pred HHHHHHHHHHh--cCChHHHHHHHHhCC
Q 003868 557 HYARFIDLLCR--AGKFSEAKDVIDSLP 582 (790)
Q Consensus 557 ~~~~li~~~~~--~g~~~~A~~~~~~~~ 582 (790)
....|++++-. ...+++|..-|+.+.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 44456666643 345677777777764
No 177
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.08 E-value=0.0094 Score=62.71 Aligned_cols=120 Identities=14% Similarity=0.114 Sum_probs=96.0
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC----CCHhH
Q 003868 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS--GYDSSLSAGNALITMYARCGVVEAANCVFNTMPN----VDSVS 486 (790)
Q Consensus 413 g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~ 486 (790)
+.+.+...+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+.+..+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 45667778888888888888888888888777765 3323334556899999999999999988876554 79999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc
Q 003868 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532 (790)
Q Consensus 487 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 532 (790)
+|.|+..+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998888888888888888777665
No 178
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0048 Score=60.36 Aligned_cols=107 Identities=15% Similarity=0.110 Sum_probs=89.3
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHhcCCCCCcchH
Q 003868 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIH---GNIDLGIQAAEQLFQLMPHHAGTYV 625 (790)
Q Consensus 551 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~ 625 (790)
.+-|.+.|-.|...|.+.|+++.|...|.+. .+. +++..+..+..++... .+..++..++++++.++|.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 4667899999999999999999999999876 333 4566777777776443 3557899999999999999999999
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHhCCCccCCc
Q 003868 626 LLSNMYANLGRWDDAARVRKLMRDRGVKKEPG 657 (790)
Q Consensus 626 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 657 (790)
.|+..+...|++.+|...|+.|.+.....+|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 99999999999999999999999865544443
No 179
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.07 E-value=0.0016 Score=50.52 Aligned_cols=57 Identities=12% Similarity=0.168 Sum_probs=51.2
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 594 LAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 594 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
...+...++++.|.++++++++++|+++..+...+.+|...|++++|.+.++...+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 356788899999999999999999999999999999999999999999999998753
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.06 E-value=0.065 Score=54.48 Aligned_cols=151 Identities=15% Similarity=0.240 Sum_probs=86.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHc-CCHHHHHHHHHHhcc----CC-----hhHHHHHHHHHH
Q 003868 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA-GLIDEAKSLFEAMRE----RN-----LLSWTVMISGLA 394 (790)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~----~~-----~~~~~~li~~~~ 394 (790)
...++.|.+.|+...|-+.+.. +...|-.. |++++|.+.|++..+ .+ ...+..+...+.
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 3344567777877777655443 44556666 788888888776653 11 135666777888
Q ss_pred hcCChHHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHHccCChHHHHHHHHHHHHh--CCCCc--hhHHHHHHHHHH
Q 003868 395 QNGYGEEGLKLFSQMRLEGFK-----PCDY-AFAGAITSCAGLGALENGRQLHAQLVHS--GYDSS--LSAGNALITMYA 464 (790)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~ll~~~~~~g~~~~a~~i~~~~~~~--g~~~~--~~~~~~li~~y~ 464 (790)
+.|++++|+++|++....-.. .+.. .|...+-++...||...|...++..... ++..+ ..+...|+.+|-
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 888888888888887654322 1121 2233334555667787887777776644 33322 345556666665
Q ss_pred hc--CCHHHHHHHHhcCCCCCHhH
Q 003868 465 RC--GVVEAANCVFNTMPNVDSVS 486 (790)
Q Consensus 465 ~~--g~~~~A~~~~~~~~~~~~~~ 486 (790)
.. ..+++|..-|+.+.+.|..-
T Consensus 247 ~~D~e~f~~av~~~d~~~~ld~w~ 270 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSISRLDNWK 270 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS---HHH
T ss_pred hCCHHHHHHHHHHHcccCccHHHH
Confidence 42 35667777777777665443
No 181
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.00 E-value=0.00038 Score=44.31 Aligned_cols=33 Identities=30% Similarity=0.565 Sum_probs=31.0
Q ss_pred HHHHHhcCCCCCcchHhhHHHHHhcCChhHHHH
Q 003868 610 AEQLFQLMPHHAGTYVLLSNMYANLGRWDDAAR 642 (790)
Q Consensus 610 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 642 (790)
++++++++|+|+.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 689999999999999999999999999999863
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.99 E-value=0.11 Score=55.70 Aligned_cols=232 Identities=16% Similarity=0.196 Sum_probs=108.6
Q ss_pred cCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---------
Q 003868 279 QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--------- 349 (790)
Q Consensus 279 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--------- 349 (790)
.|-...+.+-+..+...|.+++|.++- .+.....-|..|..-....=+++-|++.+-+..+
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~ia----------clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~E 622 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIA----------CLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISE 622 (1081)
T ss_pred ecccccccccchhhhhccchhhhhccc----------ccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHH
Confidence 344445555556666777777776542 2222233344444433344444444444443321
Q ss_pred ------CChhHH-HHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003868 350 ------RDLVSW-NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422 (790)
Q Consensus 350 ------~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 422 (790)
+..+.- -.+...++-.|.+.+|-++|. ++|.-..|+++|.+|+.-.
T Consensus 623 L~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk------------------~~G~enRAlEmyTDlRMFD--------- 675 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLLLADVFAYQGKFHEAAKLFK------------------RSGHENRALEMYTDLRMFD--------- 675 (1081)
T ss_pred HHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHH------------------HcCchhhHHHHHHHHHHHH---------
Confidence 111111 112234455566555555544 3455666777776665321
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHH
Q 003868 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502 (790)
Q Consensus 423 ~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 502 (790)
...-+...|.-++-..+.+.-.+- ..++.--.+-..++...|+.++|..+. +.+|-.+-
T Consensus 676 -~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~ 734 (1081)
T KOG1538|consen 676 -YAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDM 734 (1081)
T ss_pred -HHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHH
Confidence 122333444444444333322111 001101123344555566666665432 33343444
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 003868 503 AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582 (790)
Q Consensus 503 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 582 (790)
+.++-+++-. .+..+...+..-+-+...+.-|-++|.+|-. ...++++....+++++|..+-++.|
T Consensus 735 lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 735 LIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCc
Confidence 4444333322 1223333333334445556666777776643 2356666777777777777777764
No 183
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.96 E-value=0.021 Score=57.76 Aligned_cols=138 Identities=9% Similarity=0.122 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003868 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS-CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463 (790)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 463 (790)
+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45556666666666777777777776432 2222233322222 33346666788888887776 566777888888888
Q ss_pred HhcCCHHHHHHHHhcCCC--C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 003868 464 ARCGVVEAANCVFNTMPN--V----DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526 (790)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 526 (790)
.+.|+.+.|+.+|++... + ....|...+.--.+.|+.+.+.++.+++.+ ..|+...+..++
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~ 147 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFS 147 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHH
Confidence 888888888888887764 2 234788888888888888888888888887 455544433333
No 184
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.89 E-value=0.0017 Score=52.07 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=48.1
Q ss_pred cCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCC-ChhHHHHHHHHHHhcCChHHH
Q 003868 497 HGNGARAIELYEQMLKEGI-LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP-GEDHYARFIDLLCRAGKFSEA 574 (790)
Q Consensus 497 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 574 (790)
.|+++.|+.+|+++.+..- .|+...+..+..++.+.|++++|..+++. . ...| +....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5677788888888777422 11334455567777777777777777776 2 1222 223333456667777777777
Q ss_pred HHHHHh
Q 003868 575 KDVIDS 580 (790)
Q Consensus 575 ~~~~~~ 580 (790)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777654
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.88 E-value=0.11 Score=46.93 Aligned_cols=133 Identities=15% Similarity=0.135 Sum_probs=97.5
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC---CHHHH
Q 003868 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP-FKP---SAPIW 590 (790)
Q Consensus 515 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~ 590 (790)
..|....-..|..+....|+..+|...|++...- -+.-|....-.+..+....+++.+|...+++.. ..| .+...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 5677777777888888888888888888887762 334566667777778888888888888887752 112 12234
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 591 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
..+...+...|+++.|+..|+.++.-.|+- ..-......+.+.|+.+++..-+....+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 556778888899999999999998887754 5566677788899988888876666554
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.83 E-value=0.028 Score=61.84 Aligned_cols=142 Identities=17% Similarity=0.061 Sum_probs=105.5
Q ss_pred CCCCCHhHHHHHHHHHHh--cC---ChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHcc--------CCHHHHHHHHHH
Q 003868 479 MPNVDSVSWNAMIAALGQ--HG---NGARAIELYEQMLKEGILPDRI-TFLTVLSACNHA--------GLVKEGRRYFET 544 (790)
Q Consensus 479 ~~~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~--------g~~~~a~~~~~~ 544 (790)
....|...|...+.+... .+ ....|..+|++..+ ..|+.. .+..+..++... .++..+.+....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 334688999999888654 22 37799999999999 688874 455544444321 123445555554
Q ss_pred cccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc
Q 003868 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622 (790)
Q Consensus 545 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 622 (790)
.......+.+...|..+.-.....|++++|...+++. ...|+...|..+...+...|+.++|...+++++.++|.++.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 3332123445577888877777889999999999987 56788889999999999999999999999999999999974
No 187
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.14 Score=48.87 Aligned_cols=138 Identities=12% Similarity=0.010 Sum_probs=94.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHH-----HH
Q 003868 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA-----LI 460 (790)
Q Consensus 386 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~-----li 460 (790)
.+.++..+.-.|.+.-.+.++.+.++...+.+......+.+.-.+.|+.+.|...++...+..-..+....+. ..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3445555555666777888888888776666777777888888888888888888887776533333333333 33
Q ss_pred HHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 003868 461 TMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTV 525 (790)
Q Consensus 461 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 525 (790)
..|.-.++...|...|.+++. .|++.-|.-.-+..-.|+..+|++..+.|.+ ..|...+-+++
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~ 325 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESV 325 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhH
Confidence 445667788888888887775 3455555444444456889999999999988 56666554433
No 188
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.73 E-value=0.19 Score=53.97 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=19.8
Q ss_pred CCHHHHHHHHccCCCCCeeeHHHHHHHHHhCCChhHHHHHHHhc
Q 003868 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251 (790)
Q Consensus 208 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 251 (790)
|.+.+|-++|.+ +|.-.+|+++|..|
T Consensus 646 gKF~EAAklFk~------------------~G~enRAlEmyTDl 671 (1081)
T KOG1538|consen 646 GKFHEAAKLFKR------------------SGHENRALEMYTDL 671 (1081)
T ss_pred hhHHHHHHHHHH------------------cCchhhHHHHHHHH
Confidence 778888887754 67777888888777
No 189
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.70 E-value=0.021 Score=47.01 Aligned_cols=79 Identities=13% Similarity=0.071 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccC--------ChHHHHHHHHHHHHhCCCCchhHHH
Q 003868 387 TVMISGLAQNGYGEEGLKLFSQMRLEGF-KPCDYAFAGAITSCAGLG--------ALENGRQLHAQLVHSGYDSSLSAGN 457 (790)
Q Consensus 387 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~i~~~~~~~g~~~~~~~~~ 457 (790)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.++..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445555556778899999999999998 889999999998877543 2345667888888888888888888
Q ss_pred HHHHHHHh
Q 003868 458 ALITMYAR 465 (790)
Q Consensus 458 ~li~~y~~ 465 (790)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877654
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.67 E-value=0.032 Score=50.16 Aligned_cols=102 Identities=19% Similarity=0.234 Sum_probs=91.0
Q ss_pred CCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--CCcc
Q 003868 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL---PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH--HAGT 623 (790)
Q Consensus 549 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~ 623 (790)
..+.|++..--.|...+.+.|+..||...|++. .+..|......+.++....++...|...++++.+-.|. .+..
T Consensus 83 ~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 83 LAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred HhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 356788888889999999999999999999986 45678888999999999999999999999999999876 6778
Q ss_pred hHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 624 YVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 624 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
...++..|...|++.+|..-|+...+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 889999999999999999999988764
No 191
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.65 E-value=0.18 Score=52.18 Aligned_cols=160 Identities=19% Similarity=0.156 Sum_probs=95.9
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCC---C----HhHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 003868 459 LITMYARCGVVEAANCVFNTMPNV---D----SVSWNAMIAALGQ---HGNGARAIELYEQMLKEGILPDRITFLTVLSA 528 (790)
Q Consensus 459 li~~y~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 528 (790)
|+-.|-...+++...++++.+... + ...--...-++-+ .|+.++|++++..+....-.++..||..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 334466666666666666666542 1 1111122334444 67788888888776655566677777766665
Q ss_pred HHc---------cCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHH----HHHH---H----hC---CCCC
Q 003868 529 CNH---------AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA----KDVI---D----SL---PFKP 585 (790)
Q Consensus 529 ~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A----~~~~---~----~~---~~~p 585 (790)
|-. ...+++|...|.+.- .+.|+..+--.++-.+...|...+. .++- . +- .-..
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 521 224677777777643 3445544444444455555542222 2221 1 11 1234
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 003868 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 586 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
|...+.+++.++.-.||.+.|.+.+++++.+.|+..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 556678999999999999999999999999987763
No 192
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.65 E-value=0.1 Score=51.38 Aligned_cols=171 Identities=14% Similarity=0.101 Sum_probs=96.5
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC--CCH-hH---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHH
Q 003868 459 LITMYARCGVVEAANCVFNTMPN--VDS-VS---WNAMIAALGQHGNGARAIELYEQMLKEGILPDR--ITFLTVLSACN 530 (790)
Q Consensus 459 li~~y~~~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~ 530 (790)
....+.+.|++++|.+.|+.+.. |+. .. .-.++.++-+.+++++|...|++..+ ..|+. ..+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHHHHh
Confidence 44445556777777777776654 221 11 12345566677777777777777776 34444 23333333322
Q ss_pred c--cC---------------C---HHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHH
Q 003868 531 H--AG---------------L---VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590 (790)
Q Consensus 531 ~--~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 590 (790)
. .+ + ..+|...|+.+++ -|=...-..+|...+..+...--.. -
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~la~~-e 178 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRLAKY-E 178 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHHHHH-H
Confidence 1 00 1 1223333333333 2222222333333332221000000 1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC---cchHhhHHHHHhcCChhHHHHHHHHHH
Q 003868 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHHA---GTYVLLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 591 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
..+..-|.+.|++.-|..-++.+++.-|+.+ .+...+..+|...|..++|.++...+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1334557888999999999999999988754 567788999999999999999887664
No 193
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.64 E-value=0.0021 Score=49.09 Aligned_cols=49 Identities=16% Similarity=0.292 Sum_probs=24.7
Q ss_pred ccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 003868 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581 (790)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 581 (790)
..|++++|.++|+.+... .+-+...+..+..+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555555555555442 2224444445555555555555555555554
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.62 E-value=0.0058 Score=46.75 Aligned_cols=65 Identities=17% Similarity=0.308 Sum_probs=54.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCC
Q 003868 554 GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHG-NIDLGIQAAEQLFQLMP 618 (790)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 618 (790)
+...|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567788888889999999999988875 3445 5568888899999999 79999999999999987
No 195
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.61 E-value=1.5 Score=47.91 Aligned_cols=119 Identities=13% Similarity=0.014 Sum_probs=68.5
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCC--------ChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCC
Q 003868 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF--------SLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351 (790)
Q Consensus 280 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~ 351 (790)
|.+..|..+.......-.++.|+..|-..... .|+.. +...-.+-+. +--|++++|++++-++..+|
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh
Confidence 66677777777666666666666665443221 12111 0111111122 23488999999999998877
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhccC--C---hhHHHHHHHHHHhcCChHHHHHHHHH
Q 003868 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRER--N---LLSWTVMISGLAQNGYGEEGLKLFSQ 408 (790)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~---~~~~~~li~~~~~~g~~~~A~~~~~~ 408 (790)
.. |..+.+.|+|-...++++.-... | ..+|+.+...++....+++|.+.|..
T Consensus 765 LA-----ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 765 LA-----IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hh-----HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 53 45566667776666665543321 1 24667776666666666666666543
No 196
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.60 E-value=0.015 Score=54.10 Aligned_cols=97 Identities=13% Similarity=0.216 Sum_probs=74.9
Q ss_pred HHHHhcC--CCCCHhHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc-------------
Q 003868 473 NCVFNTM--PNVDSVSWNAMIAALGQ-----HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA------------- 532 (790)
Q Consensus 473 ~~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 532 (790)
...|+.. ..+|-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3455554 34677777777877765 467777788888999999999999999999886542
Q ss_pred ---CCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCC
Q 003868 533 ---GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570 (790)
Q Consensus 533 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 570 (790)
.+.+-|++++++|... |+-||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 2457788999999875 999999999999999877664
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.59 E-value=0.016 Score=57.48 Aligned_cols=94 Identities=13% Similarity=0.045 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC---cchHhh
Q 003868 556 DHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA---GTYVLL 627 (790)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l 627 (790)
..|..-+..+.+.|++++|...|+.+ ...|+ ...+..+...+...|+++.|...|+++++..|+++ .++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555555555667777777777665 22232 23566677777888888888888888888777653 455556
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 003868 628 SNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 628 ~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+.+|...|++++|.++++...+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7778888888888888887764
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.56 E-value=0.024 Score=48.48 Aligned_cols=86 Identities=20% Similarity=0.108 Sum_probs=56.8
Q ss_pred HHHHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---CCcchHhhHHHHHh
Q 003868 562 IDLLCRAGKFSEAKDVIDSL---PFKPS--APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH---HAGTYVLLSNMYAN 633 (790)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 633 (790)
..++-..|+.++|..+|++. +.... ...+-.+.+.++..|++++|+.++++.++..|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34455667777777776654 22221 234556677777788888888888888777776 55555666677778
Q ss_pred cCChhHHHHHHHHH
Q 003868 634 LGRWDDAARVRKLM 647 (790)
Q Consensus 634 ~g~~~~a~~~~~~m 647 (790)
.|++++|.+.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 88888887776554
No 199
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.51 E-value=0.0098 Score=61.94 Aligned_cols=63 Identities=16% Similarity=0.008 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcc---hHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT---YVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 587 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
...|+.+..+|...|++++|+..++++++++|++..+ |..++.+|...|+.++|.+.+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555432 55555555555555555555555544
No 200
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.51 E-value=1.7 Score=47.43 Aligned_cols=154 Identities=10% Similarity=0.015 Sum_probs=83.2
Q ss_pred CCHHHHHHHHccCCCCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCc-----chhhHHHHhhhhhHHHHHHhCccCCh
Q 003868 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG-----VAWNALISGYVHRELKMLMLRIQLDE 282 (790)
Q Consensus 208 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-----~~~~~li~~~~~~~~~m~~~~~~p~~ 282 (790)
|++++|++++-++.++|.. |..+.+.|++-...++++.=...+. ..|+.+=. ...+.
T Consensus 748 g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~-------------~fa~~ 809 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGE-------------TFAEM 809 (1189)
T ss_pred cchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHH-------------HHHHH
Confidence 8899999999998888743 5566677777777777653110000 01111100 00112
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHhc----CCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHH
Q 003868 283 FTYTSVISACANSGLFRLGKQVHAYLLRTE----AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAI 358 (790)
Q Consensus 283 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~l 358 (790)
..|......|...|+.+.-.+.+-.....+ ....++.+....-.+.+++...|.-++|.+.|-+-..|. +.
T Consensus 810 ~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aA 884 (1189)
T KOG2041|consen 810 MEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AA 884 (1189)
T ss_pred HHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HH
Confidence 223334444444444433222211111000 001233355666777788888888888887776655543 23
Q ss_pred HHHHHHcCCHHHHHHHHHHhccCChh
Q 003868 359 LSAYVSAGLIDEAKSLFEAMRERNLL 384 (790)
Q Consensus 359 i~~~~~~g~~~~A~~~~~~m~~~~~~ 384 (790)
+..+...++|.+|.++-+...-|.+.
T Consensus 885 v~tCv~LnQW~~avelaq~~~l~qv~ 910 (1189)
T KOG2041|consen 885 VHTCVELNQWGEAVELAQRFQLPQVQ 910 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHH
Confidence 45667777788887777766655443
No 201
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.50 E-value=0.047 Score=48.55 Aligned_cols=88 Identities=8% Similarity=-0.051 Sum_probs=43.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHh
Q 003868 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRI-TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR 567 (790)
Q Consensus 489 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 567 (790)
.+..-+.+.|++++|..+|+-+.. +.|... .|..|..+|-..|++++|+..|.....- -+.++..+-.+...+..
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L--~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI--KIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHH
Confidence 334444555566666666655555 344443 3344444444555555555555555431 12234444455555555
Q ss_pred cCChHHHHHHHHh
Q 003868 568 AGKFSEAKDVIDS 580 (790)
Q Consensus 568 ~g~~~~A~~~~~~ 580 (790)
.|+.+.|++.|+.
T Consensus 116 lG~~~~A~~aF~~ 128 (157)
T PRK15363 116 CDNVCYAIKALKA 128 (157)
T ss_pred cCCHHHHHHHHHH
Confidence 5555555555543
No 202
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.43 E-value=0.041 Score=45.32 Aligned_cols=79 Identities=15% Similarity=0.233 Sum_probs=63.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHccC--------CHHHHHHHHHHcccCCCCCCChhHH
Q 003868 488 NAMIAALGQHGNGARAIELYEQMLKEGI-LPDRITFLTVLSACNHAG--------LVKEGRRYFETMHGPYGIPPGEDHY 558 (790)
Q Consensus 488 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~ 558 (790)
...|..+...+++.....+|+.+++.|+ .|...+|+.++.+.++.. .+-+.+.+++.|... +++|+.++|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 3456666667999999999999999999 899999999998876543 345567788888876 889999999
Q ss_pred HHHHHHHHh
Q 003868 559 ARFIDLLCR 567 (790)
Q Consensus 559 ~~li~~~~~ 567 (790)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 988887754
No 203
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.42 E-value=0.026 Score=59.52 Aligned_cols=120 Identities=13% Similarity=0.081 Sum_probs=93.4
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-C-----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh
Q 003868 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPN-V-----DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521 (790)
Q Consensus 448 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 521 (790)
+.+.+......+++......+++.+..++-+... + -..+..++|..|.+.|..++++.+++.=..-|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3455556666677777777788888887766543 1 233456999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhc
Q 003868 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568 (790)
Q Consensus 522 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 568 (790)
|+.|++.+.+.|++..|.++...|... +...+..++..-+..+.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 999999999999999999999888765 5555666665444444444
No 204
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.36 E-value=0.0052 Score=41.98 Aligned_cols=42 Identities=21% Similarity=0.304 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHH
Q 003868 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629 (790)
Q Consensus 588 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 629 (790)
.+|..+..++...|++++|+++++++++..|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367888999999999999999999999999999888877754
No 205
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=2.3 Score=47.15 Aligned_cols=338 Identities=14% Similarity=0.113 Sum_probs=195.6
Q ss_pred HHhCccCChhhHH-----HHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCC---HHHHHHHHh
Q 003868 274 LMLRIQLDEFTYT-----SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK---VNEARDIFN 345 (790)
Q Consensus 274 ~~~~~~p~~~t~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~f~ 345 (790)
..-|++.+..-|. .+|+-+...+.+..|.++-..+.. +-.. ...++.....-+.+..+ -+.+..+-+
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~----p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~ 498 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNL----PESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDE 498 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCC----cccc-ccHHHHHHHHHHHhccCccchHHHHHHHH
Confidence 5567776665554 456667777888888888777643 2211 14677777777777633 333444545
Q ss_pred hCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHhccCC--------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003868 346 QMPE--RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN--------LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415 (790)
Q Consensus 346 ~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 415 (790)
++.. ..-++|..+.+---+.|+.+-|..+++.=+... ..-+..-+.-..+.|+.+-...++-.|...
T Consensus 499 kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~--- 575 (829)
T KOG2280|consen 499 KLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK--- 575 (829)
T ss_pred HhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---
Confidence 5554 456788888888888999998888876544321 122334444455556666555555554432
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH-HhcC-----CCCCHhHHHH
Q 003868 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV-FNTM-----PNVDSVSWNA 489 (790)
Q Consensus 416 p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~-~~~~-----~~~~~~~~~~ 489 (790)
.+...|...+ .+...|..++.+..+..-. ..|-+.|-...+...+-.+ ++.. .+.-......
T Consensus 576 ~~~s~l~~~l------~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~ 643 (829)
T KOG2280|consen 576 LNRSSLFMTL------RNQPLALSLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKT 643 (829)
T ss_pred HHHHHHHHHH------HhchhhhHHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHH
Confidence 1111111111 1223344444444432111 0122222222222211111 1110 0111112222
Q ss_pred HHHHHHhcCC---hHHH-------HHHHHHHH-HcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHH
Q 003868 490 MIAALGQHGN---GARA-------IELYEQML-KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558 (790)
Q Consensus 490 li~~~~~~g~---~~~A-------~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 558 (790)
..++|++... .++| +.+.+.+. +.|..-...|.+--+.-+...|+..+|.++-.+.+ .|+...|
T Consensus 644 ~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~ 718 (829)
T KOG2280|consen 644 AANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLW 718 (829)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhH
Confidence 3344444332 1122 22333332 22344455677777788889999999999887754 4788888
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChh
Q 003868 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWD 638 (790)
Q Consensus 559 ~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 638 (790)
-.-+.+++..+++++-+++-+++. .+.-|.-...+|.++|+.++|.+.+-+.-. +.-...+|.+.|++.
T Consensus 719 wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~ 787 (829)
T KOG2280|consen 719 WLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVK 787 (829)
T ss_pred HHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHH
Confidence 888999999999999988888764 244466778899999999999988776422 226788999999999
Q ss_pred HHHHHHHHH
Q 003868 639 DAARVRKLM 647 (790)
Q Consensus 639 ~a~~~~~~m 647 (790)
+|.+.--+-
T Consensus 788 eAad~A~~~ 796 (829)
T KOG2280|consen 788 EAADLAAEH 796 (829)
T ss_pred HHHHHHHHh
Confidence 998765543
No 206
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.34 E-value=0.099 Score=44.72 Aligned_cols=90 Identities=16% Similarity=0.100 Sum_probs=50.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHhCCC--CchhHHHHHHHHHH
Q 003868 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCD--YAFAGAITSCAGLGALENGRQLHAQLVHSGYD--SSLSAGNALITMYA 464 (790)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~--~~~~~~~~li~~y~ 464 (790)
....+...|+.++|+.+|++....|..... ..+..+.+.+...|++++|..+++......-. .+..+...+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344556667778888888877777655442 24445556666777777777777766654211 11222222333444
Q ss_pred hcCCHHHHHHHHhc
Q 003868 465 RCGVVEAANCVFNT 478 (790)
Q Consensus 465 ~~g~~~~A~~~~~~ 478 (790)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 55666655555443
No 207
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.27 E-value=1.8 Score=45.07 Aligned_cols=123 Identities=20% Similarity=0.208 Sum_probs=78.3
Q ss_pred hcCC-HHHHHHHHhcCCC---CCHhHHHHHH----HHHHh---cCChHHHHHHHHHHHHcCCCCChhh----HHHHHHH-
Q 003868 465 RCGV-VEAANCVFNTMPN---VDSVSWNAMI----AALGQ---HGNGARAIELYEQMLKEGILPDRIT----FLTVLSA- 528 (790)
Q Consensus 465 ~~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a- 528 (790)
+.|. -++|.++++.+.+ -|..+-|.+. .+|.+ .....+-+.+-+-..+.|+.|-.+. -+.|.+|
T Consensus 391 ~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred hcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 3343 6677777776653 3444333322 12222 1223344444444556788875543 3333333
Q ss_pred -HHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 003868 529 -CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592 (790)
Q Consensus 529 -~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 592 (790)
....|++.++.-+-.-+. .+.|++.+|..+.-.+....++++|.+++..+| |+..+|++
T Consensus 471 yLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 346788888877766665 578999999999999999999999999999986 57776665
No 208
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.23 E-value=0.52 Score=46.45 Aligned_cols=191 Identities=10% Similarity=-0.007 Sum_probs=92.4
Q ss_pred eeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhh----HHHHHHHHHccCChHH
Q 003868 225 ELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFT----YTSVISACANSGLFRL 300 (790)
Q Consensus 225 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t----~~~ll~~~~~~~~~~~ 300 (790)
...+-.....+.+.|++++|.+.|++... .-|+... .-.+..++.+.++.+.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~------------------------~yP~s~~a~~a~l~la~ayy~~~~y~~ 87 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDN------------------------RYPFGPYSQQVQLDLIYAYYKNADLPL 87 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------------hCCCChHHHHHHHHHHHHHHhcCCHHH
Confidence 33344455667778999999999998732 2343322 2345566778889999
Q ss_pred HHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--CCh-------hHHHHHHHHHHHcCCHHHH
Q 003868 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--RDL-------VSWNAILSAYVSAGLIDEA 371 (790)
Q Consensus 301 a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~-------~~~~~li~~~~~~g~~~~A 371 (790)
|...++..++ ..+.....-+...+.+.+....-.....-+..+.. +|. .++..+|.-|=.+.-..+|
T Consensus 88 A~~~~e~fi~----~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A 163 (243)
T PRK10866 88 AQAAIDRFIR----LNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDA 163 (243)
T ss_pred HHHHHHHHHH----hCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 9988888887 33322222222222222210000000000111110 111 1223333333333444444
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 003868 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE--GFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443 (790)
Q Consensus 372 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~ 443 (790)
...+..+.+.=..---.+...|.+.|.+..|..-|+.+.+. +.+.....+..+..++...|..++|.++...
T Consensus 164 ~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 164 TKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 44333333221111224455566677777777777766653 2223333444555555555655555554443
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.15 E-value=0.07 Score=48.09 Aligned_cols=67 Identities=24% Similarity=0.310 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh-----CCCccC
Q 003868 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD-----RGVKKE 655 (790)
Q Consensus 589 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~ 655 (790)
+...++..+...|+++.|...+++++..+|-+...|..++.+|...|+..+|.++|+++.+ .|+.|.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 4566777888999999999999999999999999999999999999999999999998853 455543
No 210
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.14 E-value=2.1 Score=44.60 Aligned_cols=72 Identities=18% Similarity=0.209 Sum_probs=56.0
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHH--HHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHH
Q 003868 575 KDVIDSLPFKP----SAPIWEALLAG--CRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647 (790)
Q Consensus 575 ~~~~~~~~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 647 (790)
+.++++.++.| +...-|.|..| +..+|++.++.-...=+.+..| ++.+|..++-.+....+++||..++..+
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34555666554 23355666555 4678999999888777888888 8899999999999999999999999875
No 211
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.12 E-value=0.059 Score=54.54 Aligned_cols=242 Identities=15% Similarity=0.059 Sum_probs=119.3
Q ss_pred hHHHHHH--HHHccCChHHHHHHHHHHHHhcCCCCCC---CChhHHHHHHHHHHHCCCHHHHHHHHhh-------CCC--
Q 003868 284 TYTSVIS--ACANSGLFRLGKQVHAYLLRTEAKPTPE---FSLPVNNALVTLYWKCGKVNEARDIFNQ-------MPE-- 349 (790)
Q Consensus 284 t~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~-------m~~-- 349 (790)
.+-..+. -+++.|+...+..+|+..++ .|.+ .-..+|..|.++|.-.+++++|++.-.. |-+
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~q----vGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdkl 92 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQ----VGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKL 92 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHH----hcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchh
Confidence 3444443 37889999999999999998 5533 2345677778888888889998875432 111
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHhc----c---C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003868 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMR----E---R--NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420 (790)
Q Consensus 350 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 420 (790)
....+...|.+.+--.|.+++|.-.-.+-. + + ...++..+.+.|...|+.-.-.. -.+.|-.|+.++
T Consensus 93 GEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~ 168 (639)
T KOG1130|consen 93 GEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT 168 (639)
T ss_pred ccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH
Confidence 122333344455555677777654432221 1 1 12345556666655443210000 000111222221
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHH----HhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcCC-------C--CCHhH
Q 003868 421 FAGAITSCAGLGALENGRQLHAQLV----HSGYD-SSLSAGNALITMYARCGVVEAANCVFNTMP-------N--VDSVS 486 (790)
Q Consensus 421 ~~~ll~~~~~~g~~~~a~~i~~~~~----~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~--~~~~~ 486 (790)
- .++.|.++|.+-. +.|-. ..-..|..|.+.|.-.|+++.|...-+.-. + .....
T Consensus 169 ~-----------al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA 237 (639)
T KOG1130|consen 169 S-----------ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRA 237 (639)
T ss_pred H-----------HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 0 1122222222111 11100 011223334444444555555544332111 0 12335
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH----cCC-CCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 003868 487 WNAMIAALGQHGNGARAIELYEQMLK----EGI-LPDRITFLTVLSACNHAGLVKEGRRYFET 544 (790)
Q Consensus 487 ~~~li~~~~~~g~~~~A~~~~~~m~~----~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 544 (790)
+..+.+++.-.|+++.|.+.|+.-.. .|- ........+|..+|.-...+++|+.++..
T Consensus 238 ~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 238 HSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred hcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 56667777777888888877776432 221 11223455566666666667777777654
No 212
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=3.3 Score=45.99 Aligned_cols=110 Identities=18% Similarity=0.250 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC
Q 003868 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534 (790)
Q Consensus 455 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 534 (790)
+.+--+.-+...|+..+|.++-.+..-||-..|---+.+++..+++++-+++-+.+ + .++-|.-...+|.+.|+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAksk-----k-sPIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSK-----K-SPIGYLPFVEACLKQGN 759 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhcc-----C-CCCCchhHHHHHHhccc
Confidence 33444555667788999999988888888888888888999998888766654432 2 26678888889999999
Q ss_pred HHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 003868 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580 (790)
Q Consensus 535 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 580 (790)
.++|..++-.... .. -.+.+|.+.|++.+|.++--+
T Consensus 760 ~~EA~KYiprv~~---l~-------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 760 KDEAKKYIPRVGG---LQ-------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHhhhhhccCC---hH-------HHHHHHHHhccHHHHHHHHHH
Confidence 9999998876542 11 467888899999888776443
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.95 E-value=0.011 Score=46.57 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CC-C---CCcchHhhHHHHHhcCChhHHHHHHHHHH
Q 003868 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQL---MP-H---HAGTYVLLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 588 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p-~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
.+++.+...+...|++++|+..+++++++ .+ + -..++..++.+|...|++++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666666677777777777777776643 12 1 13567777888888888888888777664
No 214
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=95.89 E-value=0.083 Score=49.34 Aligned_cols=73 Identities=14% Similarity=0.075 Sum_probs=48.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----------------CChHHHHHHHHHHHHhCCCCchhHHHHH
Q 003868 396 NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL----------------GALENGRQLHAQLVHSGYDSSLSAGNAL 459 (790)
Q Consensus 396 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------------g~~~~a~~i~~~~~~~g~~~~~~~~~~l 459 (790)
.|..+=....+..|.+-|+.-|..+|+.||+.+=+. .+-+-|.+++++|...|+-||..++..|
T Consensus 65 RGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~l 144 (228)
T PF06239_consen 65 RGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQML 144 (228)
T ss_pred cChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 345555566666777777777777777777665431 1234577777777777777777777777
Q ss_pred HHHHHhcCC
Q 003868 460 ITMYARCGV 468 (790)
Q Consensus 460 i~~y~~~g~ 468 (790)
++.+++.+.
T Consensus 145 l~iFG~~s~ 153 (228)
T PF06239_consen 145 LNIFGRKSH 153 (228)
T ss_pred HHHhccccH
Confidence 777765543
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.84 E-value=0.11 Score=51.64 Aligned_cols=63 Identities=17% Similarity=0.111 Sum_probs=37.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 003868 559 ARFIDLLCRAGKFSEAKDVIDSL----PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 559 ~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
-.+...|...|++++|...|+.+ |..| ....|..+...+...|+.+.|...++++++..|++.
T Consensus 184 y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 184 YWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 34444555555555555555443 1111 223444555666677888888888888888888764
No 216
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.069 Score=54.51 Aligned_cols=62 Identities=15% Similarity=0.091 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 588 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.+++.|...|.+.+++..|++...+.++++|+|..+...-+.+|...|.++.|+..|+++.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 45677777788999999999999999999999999999999999999999999999999975
No 217
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.78 E-value=0.03 Score=43.27 Aligned_cols=62 Identities=15% Similarity=0.321 Sum_probs=50.2
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcch
Q 003868 563 DLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624 (790)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 624 (790)
..|.+.+++++|.+.++.+ ...| +...|......+...|+++.|.+.++++++..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 5678889999999988886 4445 556777888888999999999999999999999875443
No 218
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.73 E-value=0.083 Score=44.52 Aligned_cols=91 Identities=18% Similarity=0.225 Sum_probs=74.8
Q ss_pred HHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC----CcchHhhHHHHHhcCC
Q 003868 563 DLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH----AGTYVLLSNMYANLGR 636 (790)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~ 636 (790)
-++...|+++.|++.|.+. .+- .....||.-..+++-+|+.++|+.-+++++++.-+. ..+|+.-+.+|-..|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3577889999999998875 333 367789999999999999999999999999984433 2578888999999999
Q ss_pred hhHHHHHHHHHHhCCCc
Q 003868 637 WDDAARVRKLMRDRGVK 653 (790)
Q Consensus 637 ~~~a~~~~~~m~~~g~~ 653 (790)
-++|..-|+...+.|-+
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 99999999998876653
No 219
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.53 Score=48.15 Aligned_cols=270 Identities=13% Similarity=0.044 Sum_probs=157.3
Q ss_pred HHHHHHHCCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCChH
Q 003868 327 LVTLYWKCGKVNEARDIFNQMPE--R-DLVSWNAILSAYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGLAQNGYGE 400 (790)
Q Consensus 327 li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~ 400 (790)
....+.+...+..|+..+....+ | ++.-|..-...+...|++++|.--.+.-.+- ..-.+...-..+...++..
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 44567777788888887776554 3 4445666667777778888877665444432 2234445556666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCC-CCchhHHHHH-HHHHHhcCCHHHHHHHHhc
Q 003868 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY-DSSLSAGNAL-ITMYARCGVVEAANCVFNT 478 (790)
Q Consensus 401 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~-~~~~~~~~~l-i~~y~~~g~~~~A~~~~~~ 478 (790)
+|...|+.-. .+ ....+...++.+..... +|....+-.| ..++.-.|+.++|.+.--.
T Consensus 135 ~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 135 EAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 6766665211 00 00111111111221111 1222222222 3345556777777666555
Q ss_pred CCCCCHh-HHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCChhhHHHH---HH----------HHHccCCHHHHHHHH
Q 003868 479 MPNVDSV-SWNAMIAA--LGQHGNGARAIELYEQMLKEGILPDRITFLTV---LS----------ACNHAGLVKEGRRYF 542 (790)
Q Consensus 479 ~~~~~~~-~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~----------a~~~~g~~~~a~~~~ 542 (790)
+.+.|.. .+...+++ +--.++.+.|...|++.+. +.|+...--.. .. -..+.|.+.+|.+.+
T Consensus 195 ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Y 272 (486)
T KOG0550|consen 195 ILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECY 272 (486)
T ss_pred HHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHH
Confidence 5543333 22223333 3346778888888888777 56766432222 11 235678999999999
Q ss_pred HHcccC--CCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHH-HHHHHHHH--HHHhCCHHHHHHHHHHHHhcC
Q 003868 543 ETMHGP--YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP-IWEALLAG--CRIHGNIDLGIQAAEQLFQLM 617 (790)
Q Consensus 543 ~~~~~~--~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~-~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~ 617 (790)
.+.+.. ....|+...|........+.|++.+|+.--+..- +.|.. ++.-+..+ +...++++.|.+.++++.+..
T Consensus 273 teal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 273 TEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 988632 1344556778888888889999999988776652 33333 33333333 345588999999999998876
Q ss_pred CC
Q 003868 618 PH 619 (790)
Q Consensus 618 p~ 619 (790)
.+
T Consensus 352 ~s 353 (486)
T KOG0550|consen 352 KD 353 (486)
T ss_pred cc
Confidence 54
No 220
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.59 E-value=0.45 Score=45.56 Aligned_cols=134 Identities=12% Similarity=0.061 Sum_probs=76.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhc
Q 003868 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568 (790)
Q Consensus 489 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 568 (790)
.++..+.-+|.+.-.+.++++.++..-.-+..-...|.+.-.+.|+.+.|..+|+...+. .-..+.
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~------------- 247 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDG------------- 247 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-Hhhhhc-------------
Confidence 344444445555555666666665432333444455555555566666666666644332 001111
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHH
Q 003868 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 569 g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
.+.+..+.......+.-++++..|-..+.+++..+|.++...+.-+-+..-.|+..+|.+.++.|+
T Consensus 248 --------------~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~ 313 (366)
T KOG2796|consen 248 --------------LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMV 313 (366)
T ss_pred --------------cchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHh
Confidence 111222223333345556777777778888888888887777766666667788888888888886
Q ss_pred hC
Q 003868 649 DR 650 (790)
Q Consensus 649 ~~ 650 (790)
.+
T Consensus 314 ~~ 315 (366)
T KOG2796|consen 314 QQ 315 (366)
T ss_pred cc
Confidence 54
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.56 E-value=0.023 Score=44.64 Aligned_cols=61 Identities=15% Similarity=0.236 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-------CC-CCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 003868 556 DHYARFIDLLCRAGKFSEAKDVIDSL-------PF-KPS-APIWEALLAGCRIHGNIDLGIQAAEQLFQL 616 (790)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~~-------~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 616 (790)
.+|+.+...|.+.|++++|++.+++. +. .|+ ..++..+...+...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35566666666666666666666543 21 122 346777888888888888888888887764
No 222
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.39 E-value=5.1 Score=43.54 Aligned_cols=182 Identities=15% Similarity=0.139 Sum_probs=125.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 003868 452 SLSAGNALITMYARCGVVEAANCVFNTMPNV---DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528 (790)
Q Consensus 452 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 528 (790)
+...|...++.-.+.|+.+.+.-.|++..-| =...|--.+.-....|+.+-|..++....+--++-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567888888888999999999999987653 2334555555555668888888888776664333233332222233
Q ss_pred HHccCCHHHHHHHHHHcccCCCCCCCh-hHHHHHHHHHHhcCChHHHH---HHHHhC-CCCCCHHHHHHHHHH-----HH
Q 003868 529 CNHAGLVKEGRRYFETMHGPYGIPPGE-DHYARFIDLLCRAGKFSEAK---DVIDSL-PFKPSAPIWEALLAG-----CR 598 (790)
Q Consensus 529 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll~~-----~~ 598 (790)
+-..|+.+.|..+++.+.++ . |+. ..-..-+....|.|..+.+. +++... +.+-+..+...+.-- +.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 55678999999999999985 3 543 34444566778899999888 555443 223333333333222 34
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCC
Q 003868 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636 (790)
Q Consensus 599 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 636 (790)
..++.+.|..++.++.+..|++...|..+++.....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 56899999999999999999999999999888876663
No 223
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.38 E-value=0.72 Score=44.18 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=29.9
Q ss_pred HHHHHHcCCHHHHHHHHHHhccC--C----hhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003868 359 LSAYVSAGLIDEAKSLFEAMRER--N----LLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412 (790)
Q Consensus 359 i~~~~~~g~~~~A~~~~~~m~~~--~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 412 (790)
...+.+.|++++|.+.|+.+... + ..+.-.++.++.+.|++++|...|++..+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455666666666666666542 1 124445556666666666666666666553
No 224
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.36 E-value=2.9 Score=40.43 Aligned_cols=195 Identities=18% Similarity=0.139 Sum_probs=119.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 003868 453 LSAGNALITMYARCGVVEAANCVFNTMP-----NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527 (790)
Q Consensus 453 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 527 (790)
...+......+...+....+...+.... ......+......+...++...+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3455556666666666666666665543 23444555555666666667777777777766332221 12222222
Q ss_pred -HHHccCCHHHHHHHHHHcccCCCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHhC
Q 003868 528 -ACNHAGLVKEGRRYFETMHGPYGI--PPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS--APIWEALLAGCRIHG 601 (790)
Q Consensus 528 -a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g 601 (790)
++...|+++.+...+...... .- ......+......+...++.++|...+.+. ...++ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 567777777777777776431 11 112333344444466677788887777765 22333 456777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 602 NIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 602 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+.+.|...+...+...|.....+..+...+...|.++++...+.+...
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888777555666667766666677888877777654
No 225
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.18 E-value=4.4 Score=41.48 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=63.5
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCh-hhHHHHHHHHHccCCH
Q 003868 460 ITMYARCGVVEAANCVFNTMPN--VDSVSWNAMIAALGQHGNGARAIELYEQMLK-EGILPDR-ITFLTVLSACNHAGLV 535 (790)
Q Consensus 460 i~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~-~t~~~ll~a~~~~g~~ 535 (790)
...|.+.|++.++-.+++.+-+ |.+..|. .|....-.+.++.-+++..+ ..++||. .+...+..+....|++
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePHP~ia~----lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~ 345 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPHPDIAL----LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEF 345 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCChHHHH----HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccch
Confidence 3445555555555555555533 2222221 22222222333333333321 1256665 3555666677777777
Q ss_pred HHHHHHHHHcccCCCCCCChhHHHHHHHHHHhc-CChHHHHHHHHhC
Q 003868 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA-GKFSEAKDVIDSL 581 (790)
Q Consensus 536 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~ 581 (790)
..|..--+... ...|....|..|.+.-... |+-.++...+-+.
T Consensus 346 ~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 346 SAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 77776666555 4567777777777765443 7888877777665
No 226
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.06 E-value=0.2 Score=43.34 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=25.8
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 003868 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL----PFKPSAPIWEALLAGCR 598 (790)
Q Consensus 550 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~ 598 (790)
...|+..+..+++.+|+..|++..|+++++.. +++-+..+|..|+.-+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34455555555555555555555555554433 33334555655555443
No 227
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.04 E-value=1.5 Score=37.41 Aligned_cols=140 Identities=14% Similarity=0.136 Sum_probs=80.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHH
Q 003868 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574 (790)
Q Consensus 495 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 574 (790)
.-.|..++..++..+.... .+..-++-++--...+-+=+-..+.++.+-+-|.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 3467777778888777653 233334444433333333344455555554432222 23444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003868 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653 (790)
Q Consensus 575 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 653 (790)
..-+-.++ .+......-+.....+|+-+.-.+++..+...+..+|....-++++|.+.|...++.+++.+.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44444433 122334555777888999999999999988776778899999999999999999999999999999985
No 228
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.76 E-value=4.3 Score=39.34 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=46.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCC---cchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHA---GTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 593 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+..-|.+.|.+..|..-++.+++.-|+.+ ..+..|..+|...|..++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 34567889999999999999999876654 4566788899999999999988776653
No 229
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.74 E-value=0.96 Score=43.31 Aligned_cols=59 Identities=5% Similarity=0.032 Sum_probs=30.4
Q ss_pred HHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 003868 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310 (790)
Q Consensus 232 i~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 310 (790)
...+.+.|++++|.+.|+.+... -.+-+--....-.+..++.+.|+.+.|...++..++
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~--------------------~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDR--------------------YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH---------------------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH--------------------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556677777777777766211 000011112334455566666777777766666665
No 230
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.69 E-value=0.51 Score=40.83 Aligned_cols=79 Identities=14% Similarity=0.265 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH---------------cCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCC
Q 003868 485 VSWNAMIAALGQHGNGARAIELYEQMLK---------------EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY 549 (790)
Q Consensus 485 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---------------~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 549 (790)
.++.++|.++++.|+.+....+++..-. ....|+..+..+++.+|+..|++..|.++.+...+.|
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 4445555555555555555555543211 1123444455555555555555555555555555555
Q ss_pred CCCCChhHHHHHHH
Q 003868 550 GIPPGEDHYARFID 563 (790)
Q Consensus 550 ~~~p~~~~~~~li~ 563 (790)
+++.....|..|+.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 55555555544443
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=3.4 Score=40.80 Aligned_cols=154 Identities=17% Similarity=0.145 Sum_probs=103.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcC
Q 003868 491 IAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569 (790)
Q Consensus 491 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 569 (790)
.......|+..+|..+|+..... .|+. ..-..+..++...|+.+.|..++..+-.+ --.........-+..+.+..
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHh
Confidence 34556788999999999988874 3433 45667778888999999999999887543 11111112233456666666
Q ss_pred ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCCcchHhhHHHHHhcCChh-HHHHHHH
Q 003868 570 KFSEAKDVIDSLPFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM--PHHAGTYVLLSNMYANLGRWD-DAARVRK 645 (790)
Q Consensus 570 ~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~-~a~~~~~ 645 (790)
...+..++-.+....| |...-..+...+...|+.+.|.+.+-.++..+ -.|...-..|+.++...|.-| .+.++++
T Consensus 218 ~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 218 ATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred cCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 6666666666654455 55566677788888899988888777776653 345677778888888777444 4455555
Q ss_pred HH
Q 003868 646 LM 647 (790)
Q Consensus 646 ~m 647 (790)
+|
T Consensus 298 kL 299 (304)
T COG3118 298 KL 299 (304)
T ss_pred HH
Confidence 55
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.62 E-value=0.2 Score=52.57 Aligned_cols=97 Identities=8% Similarity=0.055 Sum_probs=63.4
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhh
Q 003868 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSA----PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627 (790)
Q Consensus 553 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 627 (790)
.+...+..+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++.+. .|..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i 149 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTI 149 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHH
Confidence 34667788888888888888888888773 566764 35888888888888888888888888886321 12111
Q ss_pred HH--HHHhcCChhHHHHHHHHHHhCCC
Q 003868 628 SN--MYANLGRWDDAARVRKLMRDRGV 652 (790)
Q Consensus 628 ~~--~~~~~g~~~~a~~~~~~m~~~g~ 652 (790)
.. .+....+..+..++++.+.+-|.
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 10 11122333455566666665555
No 233
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.57 E-value=6.9 Score=40.84 Aligned_cols=133 Identities=13% Similarity=0.188 Sum_probs=77.8
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhH-HHHH
Q 003868 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEG-ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH-YARF 561 (790)
Q Consensus 484 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~l 561 (790)
...|...++...+..-.+.|..+|-+..+.| +.++...+.+.+.-+ ..|+...|..+|+.=... -||... -.-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 3455556666666555666666666666666 445555555555433 345666666666654432 223222 2345
Q ss_pred HHHHHhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 003868 562 IDLLCRAGKFSEAKDVIDSL--PFKPS--APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 620 (790)
++.+.+.++-+.|..+|+.. .++.+ ..+|..++.--..-|+...+..+-+++.++.|..
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 55566667767777776643 11222 3567777776677777777777777777777665
No 234
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.52 E-value=3.3 Score=39.51 Aligned_cols=200 Identities=15% Similarity=0.138 Sum_probs=102.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC--HhHHHHHHHHHHhcC
Q 003868 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD--SVSWNAMIAALGQHG 498 (790)
Q Consensus 421 ~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g 498 (790)
|.-...+|....++++|..-+..+.+. .+.+...|.+ ....+.|--+.+++.+.+ +..|+--...|..+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 333444555666666666655554431 1112111111 122333444444443321 234455566777777
Q ss_pred ChHHHHHHHHHHHH--cCCCCChh--hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHH
Q 003868 499 NGARAIELYEQMLK--EGILPDRI--TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574 (790)
Q Consensus 499 ~~~~A~~~~~~m~~--~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 574 (790)
.++.|-..+++.-+ .++.|+.. .|..-+......++... -.+.|......|.|..+++||
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~m----------------a~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQM----------------AFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHH----------------HHHHHHHhhhHhhhhHHhhHH
Confidence 77777666665432 12445432 12222222222222222 234455566677788888887
Q ss_pred HHHHHhCC-----C--CCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhc----CCCCCcchHhhHHHHHhcCChhHHHH
Q 003868 575 KDVIDSLP-----F--KPSA-PIWEALLAGCRIHGNIDLGIQAAEQLFQL----MPHHAGTYVLLSNMYANLGRWDDAAR 642 (790)
Q Consensus 575 ~~~~~~~~-----~--~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~a~~ 642 (790)
-..|.+-+ + -|+. ..+.+.+-.+.-..|+..|+..++.-.+. .|++..+...|+.+| ..|+.+++..
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 76665542 1 1222 22444444555567888888888876554 456667777777776 5677777766
Q ss_pred HHH
Q 003868 643 VRK 645 (790)
Q Consensus 643 ~~~ 645 (790)
+..
T Consensus 249 vl~ 251 (308)
T KOG1585|consen 249 VLS 251 (308)
T ss_pred HHc
Confidence 543
No 235
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.47 E-value=3.8 Score=42.66 Aligned_cols=68 Identities=13% Similarity=0.016 Sum_probs=37.0
Q ss_pred HHHHcCCHHHHHHHHHHhccC---C----hhHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003868 361 AYVSAGLIDEAKSLFEAMRER---N----LLSWTVMISGLAQ---NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428 (790)
Q Consensus 361 ~~~~~g~~~~A~~~~~~m~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 428 (790)
+|-...+++...++.+.+... + ...--...-++-+ .|+.++|+.++..+......++..||..+...|
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 355555555555555555442 1 1111122333344 677777887777765555566667776666554
No 236
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.46 E-value=0.81 Score=40.09 Aligned_cols=86 Identities=20% Similarity=0.273 Sum_probs=56.6
Q ss_pred HHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc-chHhh--HHHHHhcC
Q 003868 564 LLCRAGKFSEAKDVIDSL----PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG-TYVLL--SNMYANLG 635 (790)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l--~~~~~~~g 635 (790)
...+.|++++|.+.|+.+ |..| ....-..|+.++.+.+++++|...+++.+++.|.++. .|... +-++.+..
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 344678888888887766 3333 3345667788888999999999999999999888753 23333 33333433
Q ss_pred C---------------hhHHHHHHHHHHh
Q 003868 636 R---------------WDDAARVRKLMRD 649 (790)
Q Consensus 636 ~---------------~~~a~~~~~~m~~ 649 (790)
. ..+|..-|+...+
T Consensus 99 ~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 99 EGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred hhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 3 4566666666644
No 237
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=0.41 Score=47.24 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=16.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003868 483 DSVSWNAMIAALGQHGNGARAIELYEQMLK 512 (790)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 512 (790)
|...|-.|...|...|+++.|..-|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 445555555555555555555555555554
No 238
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.28 E-value=2.4 Score=37.61 Aligned_cols=125 Identities=15% Similarity=0.222 Sum_probs=66.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChH
Q 003868 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGA 501 (790)
Q Consensus 422 ~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 501 (790)
..++..+.+.+.......+++.+.+.+ ..+....+.++..|++.+ ..
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~--------------------------------~~ 57 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD--------------------------------PQ 57 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC--------------------------------HH
Confidence 345555555566666666666666554 245555555555555432 12
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhc-CChHHHHHHHHh
Q 003868 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA-GKFSEAKDVIDS 580 (790)
Q Consensus 502 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~ 580 (790)
+.++.++. .++......++..|.+.+.++++..++..+.. |...++.+... ++.+.|.+++.+
T Consensus 58 ~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 58 KEIERLDN------KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHh------ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 23333321 23344445566666666666666666665432 22233333333 667777777766
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 003868 581 LPFKPSAPIWEALLAGCR 598 (790)
Q Consensus 581 ~~~~p~~~~~~~ll~~~~ 598 (790)
- .+...|..++..|.
T Consensus 122 ~---~~~~lw~~~~~~~l 136 (140)
T smart00299 122 Q---NNPELWAEVLKALL 136 (140)
T ss_pred C---CCHHHHHHHHHHHH
Confidence 3 25556766665554
No 239
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.23 E-value=5.5 Score=38.33 Aligned_cols=198 Identities=20% Similarity=0.159 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-HhHHHHHHH-
Q 003868 418 DYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--VD-SVSWNAMIA- 492 (790)
Q Consensus 418 ~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~- 492 (790)
...+......+...+.+..+...+...... ........+..+...+...++...+.+.+..... ++ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344445555555556666665555555442 2334445555556666666667777777665543 11 122222333
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC----ChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCC-ChhHHHHHHHHHHh
Q 003868 493 ALGQHGNGARAIELYEQMLKEGILP----DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP-GEDHYARFIDLLCR 567 (790)
Q Consensus 493 ~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 567 (790)
.+...|+.+.|...|++... ..| ....+......+...++.+++...+...... .+. ....+..+...+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 139 ALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHH
Confidence 67888999999999988855 344 2234444444467788999999999888753 333 36778888888888
Q ss_pred cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 003868 568 AGKFSEAKDVIDSL-PFKPS-APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619 (790)
Q Consensus 568 ~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 619 (790)
.+.+++|...+... ...|+ ...+..+...+...++.+.+...+++.....|.
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999888776 33444 455556666666677899999999999998887
No 240
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=1 Score=46.24 Aligned_cols=94 Identities=10% Similarity=0.115 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHh
Q 003868 556 DHYARFIDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN 633 (790)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 633 (790)
..+..|.-.|.+.+++.+|++.-.+. ..+ +|.-..--=..+|...|+++.|+..|+++++++|+|..+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34566777778888888888776654 333 4555555567788899999999999999999999998888888888877
Q ss_pred cCChhHH-HHHHHHHHh
Q 003868 634 LGRWDDA-ARVRKLMRD 649 (790)
Q Consensus 634 ~g~~~~a-~~~~~~m~~ 649 (790)
..+..+. .++|..|..
T Consensus 338 ~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 7776654 788999964
No 241
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.17 E-value=0.32 Score=46.94 Aligned_cols=101 Identities=14% Similarity=0.112 Sum_probs=81.8
Q ss_pred HHHHHHhcCC--CCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC----------
Q 003868 471 AANCVFNTMP--NVDSVSWNAMIAALGQH-----GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG---------- 533 (790)
Q Consensus 471 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 533 (790)
..++.|..+. ++|-.+|-+++..|..+ +..+-....++.|.+-|+.-|..+|..||..+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677776 57888999999888754 566777778899999999999999999998865432
Q ss_pred ------CHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChH
Q 003868 534 ------LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572 (790)
Q Consensus 534 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 572 (790)
+-+-++.++++|... |+.||.++-..|+.+++|.+..-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccccH
Confidence 345688999999875 99999999999999999988643
No 242
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.99 E-value=0.12 Score=32.63 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 003868 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 588 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 620 (790)
.+|..+...+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467888888888999999999999999988863
No 243
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.87 E-value=0.35 Score=47.06 Aligned_cols=90 Identities=19% Similarity=0.309 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC----C---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---CcchHh
Q 003868 557 HYARFIDLLCRAGKFSEAKDVIDSL----P---FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH---AGTYVL 626 (790)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~----~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~ 626 (790)
.|+.-++.| +.|++.+|...|... | ..|+.. -.|...+...|+++.|...|..+....|++ |.++.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~--yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAY--YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhH--HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 455544433 455577776666554 1 223333 336677777777777777777777766654 456777
Q ss_pred hHHHHHhcCChhHHHHHHHHHHh
Q 003868 627 LSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 627 l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
|+.+..+.|+.++|..++++..+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 77777788888888888877754
No 244
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.77 E-value=0.2 Score=31.59 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 003868 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 588 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 620 (790)
..|..+...+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356777788888888888888888888888875
No 245
>PRK11906 transcriptional regulator; Provisional
Probab=93.72 E-value=1.9 Score=45.58 Aligned_cols=144 Identities=9% Similarity=0.036 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHH-HcCCCCChh-hHHHHHHHHH---------ccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhc
Q 003868 500 GARAIELYEQML-KEGILPDRI-TFLTVLSACN---------HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568 (790)
Q Consensus 500 ~~~A~~~~~~m~-~~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 568 (790)
.+.|+.+|.+.. .+.+.|+.. .|..+..++. ......+|.++-+...+ --+-|......+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhh
Confidence 457778888877 222667654 3333322221 12345566666666664 2344566666667777777
Q ss_pred CChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchH--hhHHHHHhcCChhHHHHHH
Q 003868 569 GKFSEAKDVIDSL-PFKPSA-PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYV--LLSNMYANLGRWDDAARVR 644 (790)
Q Consensus 569 g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~a~~~~ 644 (790)
|+++.|...|++. .+.||. .+|......+.-.|+.++|.+.++++++++|....+-. ..++.|...+ .++|.+++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 8888888888876 456654 56766666777788888888888888888887644333 3333455544 46666655
Q ss_pred HH
Q 003868 645 KL 646 (790)
Q Consensus 645 ~~ 646 (790)
-+
T Consensus 431 ~~ 432 (458)
T PRK11906 431 YK 432 (458)
T ss_pred hh
Confidence 43
No 246
>PRK11906 transcriptional regulator; Provisional
Probab=93.67 E-value=0.83 Score=48.18 Aligned_cols=116 Identities=10% Similarity=0.039 Sum_probs=85.8
Q ss_pred CHHHHHHHHHHcccCCCCCCC-hhHHHHHHHHHHh---------cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhC
Q 003868 534 LVKEGRRYFETMHGPYGIPPG-EDHYARFIDLLCR---------AGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHG 601 (790)
Q Consensus 534 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 601 (790)
..+.|..+|.+......+.|+ ...|..+...+.. .....+|.++-++. .+.| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 457788888888743345665 4455555444321 12334455555544 3444 6677777777778888
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 602 NIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 602 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+.+.|...++++..++|+.+.+|...+..+.-.|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999998654
No 247
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.64 E-value=0.85 Score=48.15 Aligned_cols=149 Identities=17% Similarity=0.179 Sum_probs=77.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHH
Q 003868 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAK 575 (790)
Q Consensus 496 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 575 (790)
+..+...-+++-++..+ +.||-.+...++ +-..+.-+.++.++|++..+. + ...+..- ......|.. -
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g~~---~ 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHGHF---W 247 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhcccch---h
Confidence 34455555666666665 566665433333 222344567777777765542 1 0000000 000001111 1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--CCcchHhhHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003868 576 DVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH--HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653 (790)
Q Consensus 576 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 653 (790)
+.+.+-...|-..+=..|...+++.|+.++|.+.++.+++..|. +-.....|+..+...+++.++..++.+-.+..++
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 11111111222233344555667778888888888888776654 3456677788888888888888887776554444
Q ss_pred cCC
Q 003868 654 KEP 656 (790)
Q Consensus 654 ~~~ 656 (790)
+..
T Consensus 328 kSA 330 (539)
T PF04184_consen 328 KSA 330 (539)
T ss_pred chH
Confidence 443
No 248
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.58 E-value=3.2 Score=36.84 Aligned_cols=50 Identities=8% Similarity=-0.047 Sum_probs=40.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 003868 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432 (790)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 432 (790)
+......++..+.+.+.......+++.+...+ ..+....+.++..+++..
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~ 55 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD 55 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC
Confidence 33455678899998999999999999998876 367778888888888653
No 249
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.25 E-value=1.1 Score=48.43 Aligned_cols=130 Identities=15% Similarity=0.271 Sum_probs=73.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChH
Q 003868 495 GQHGNGARAIELYEQMLKEGILPD--RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572 (790)
Q Consensus 495 ~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 572 (790)
...|+++++.++.+.-. +-|. ..-...++.-+.+.|..+.|+++.+.-. .-.++..++|+++
T Consensus 272 v~~~d~~~v~~~i~~~~---ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASN---LLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLD 335 (443)
T ss_dssp HHTT-HHH-----HHHH---TGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HH
T ss_pred HHcCChhhhhhhhhhhh---hcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHH
Confidence 44566666655553111 1111 2235556666667777777766643211 2245556777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCC
Q 003868 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651 (790)
Q Consensus 573 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 651 (790)
.|.++.++.. +...|..|......+|+++.|++.+++. .-+..|+-+|...|+.+.-.++.+....+|
T Consensus 336 ~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 336 IALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 7777776653 6667888888777888888777777763 446677777777777766666666655544
No 250
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.07 E-value=2.3 Score=42.41 Aligned_cols=113 Identities=12% Similarity=0.054 Sum_probs=58.1
Q ss_pred cCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH----HHHccCCHHHH
Q 003868 466 CGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS----ACNHAGLVKEG 538 (790)
Q Consensus 466 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~----a~~~~g~~~~a 538 (790)
.|+..+|-..++++.+ .|..+|+..=.+|.-.|+...-...+++..-. ..||...|..+=. ++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3444444444444433 25566666666666666666666666665543 3455433322211 22355666666
Q ss_pred HHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 003868 539 RRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581 (790)
Q Consensus 539 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 581 (790)
.+.-++..+- .+.|.-.-.++...+.-.|++.++.+++.+-
T Consensus 195 Ek~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 6666655431 1222223334555556666666666666554
No 251
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=92.99 E-value=0.58 Score=42.04 Aligned_cols=55 Identities=24% Similarity=0.307 Sum_probs=27.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHc
Q 003868 489 AMIAALGQHGNGARAIELYEQMLKEGILP-DRITFLTVLSACNHAGLVKEGRRYFETM 545 (790)
Q Consensus 489 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 545 (790)
.++..+...|++++|+.+.+++... .| |...+..++.++...|+..+|.++|+.+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444455555555555555555552 33 3345555555555555555555555544
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.92 E-value=2.1 Score=42.17 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=87.4
Q ss_pred HHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH---HHHHHHhCCHH
Q 003868 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEAL---LAGCRIHGNID 604 (790)
Q Consensus 528 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l---l~~~~~~g~~~ 604 (790)
.....|+..+|...|...... .+-+...-..|...|...|+.++|..++..+|.+-...-|..+ +....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 456778999999999988763 3344567778899999999999999999999765444444432 22233333322
Q ss_pred HHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 605 LGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 605 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
+.. .++.-+..+|+|...-..|+..|...|+.++|.+.+=.+.++
T Consensus 221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 344455679999999999999999999999999987777543
No 253
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.73 E-value=0.9 Score=45.62 Aligned_cols=224 Identities=14% Similarity=0.092 Sum_probs=102.6
Q ss_pred HHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCCc---hhHHHHHHHHHHh
Q 003868 393 LAQNGYGEEGLKLFSQMRLE--GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS--GYDSS---LSAGNALITMYAR 465 (790)
Q Consensus 393 ~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~--g~~~~---~~~~~~li~~y~~ 465 (790)
+.+..+.++|+..+.+-... ...--..+|..+..+.++.|.++++...---.+.. ..... ...|..|...+.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777665542 11112335666667777777666655432221111 01111 1222333333333
Q ss_pred cCCHHHHHHHHhcC---CC--C---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHcc
Q 003868 466 CGVVEAANCVFNTM---PN--V---DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-----ITFLTVLSACNHA 532 (790)
Q Consensus 466 ~g~~~~A~~~~~~~---~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~ 532 (790)
.-++.+++.+-..- +. + .-..-.+|..++.-.+.++++++.|+...+---..+. ..+..|.+.|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 33333333332211 11 0 0112223444555555666666666665542111111 3566666666666
Q ss_pred CCHHHHHHHHHHc---ccCCCCCCChhHHHHH-----HHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHH
Q 003868 533 GLVKEGRRYFETM---HGPYGIPPGEDHYARF-----IDLLCRAGKFSEAKDVIDSL-------PFKP-SAPIWEALLAG 596 (790)
Q Consensus 533 g~~~~a~~~~~~~---~~~~~~~p~~~~~~~l-----i~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~ 596 (790)
.++++|.-+..+. ...+++..-..-|.++ .-+|-..|++.+|.+.-++. +.++ -......+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 6666666655443 2223333222223322 22344555555554444432 3222 12234455566
Q ss_pred HHHhCCHHHHHHHHHHHHhc
Q 003868 597 CRIHGNIDLGIQAAEQLFQL 616 (790)
Q Consensus 597 ~~~~g~~~~a~~~~~~~~~~ 616 (790)
|+..|+.|.|..-|+.+...
T Consensus 256 yR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHhcccHhHHHHHHHHHHHH
Confidence 66666666666666665544
No 254
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.67 E-value=3.5 Score=45.15 Aligned_cols=161 Identities=13% Similarity=0.077 Sum_probs=105.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh------hHHHHHHHHHc----cCCHHHHHHHHHHcccCCCCCCCh
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI------TFLTVLSACNH----AGLVKEGRRYFETMHGPYGIPPGE 555 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~ 555 (790)
....+++...-.|+-+.+++++.+-.+.+---... +|...+..+.. ....+.+.+++..+.+. -|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 34456666677788888888887765532111111 23333333332 45788899999998864 3555
Q ss_pred hHHH-HHHHHHHhcCChHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchH-hh
Q 003868 556 DHYA-RFIDLLCRAGKFSEAKDVIDSLPF-K-----PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYV-LL 627 (790)
Q Consensus 556 ~~~~-~li~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l 627 (790)
..|. --...+...|++++|.+.|++.-. + -....+--+...+....++++|...+.++.+...-+...|. ..
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 5444 334566778999999999986521 1 12233444566677889999999999999998766656665 44
Q ss_pred HHHHHhcCCh-------hHHHHHHHHHHh
Q 003868 628 SNMYANLGRW-------DDAARVRKLMRD 649 (790)
Q Consensus 628 ~~~~~~~g~~-------~~a~~~~~~m~~ 649 (790)
+-+|...|+. ++|.+++++...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 5566788888 888888887754
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.62 E-value=0.68 Score=45.96 Aligned_cols=159 Identities=11% Similarity=0.044 Sum_probs=116.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHH----HHHHHHHhcCCh
Q 003868 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA----RFIDLLCRAGKF 571 (790)
Q Consensus 496 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~li~~~~~~g~~ 571 (790)
-.|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++++... ..|+...|. .+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 368888999999999885 5556678888888999999999999999998863 345544333 344456789999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC----CcchHhhHHHHHhcCChhHHHHHHH
Q 003868 572 SEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH----AGTYVLLSNMYANLGRWDDAARVRK 645 (790)
Q Consensus 572 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 645 (790)
++|++.-++. .+.| |.-.-.++.......|+..++.+...+--..-.+. ...|-..+-.|.+.+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998886 4444 45555667777788899999998887754433221 3456677778888899999999999
Q ss_pred HHHhCCCccCCc
Q 003868 646 LMRDRGVKKEPG 657 (790)
Q Consensus 646 ~m~~~g~~~~~~ 657 (790)
.-.-..+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 765444555444
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.61 E-value=5.1 Score=42.61 Aligned_cols=99 Identities=13% Similarity=0.212 Sum_probs=68.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCH--HHHHHHHHHHH
Q 003868 523 LTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF--KPSA--PIWEALLAGCR 598 (790)
Q Consensus 523 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~--~~~~~ll~~~~ 598 (790)
..+..++-+.|+.++|.+.|++|.+.+....+......|+..|...+.+.++..++.+... -|.. ..|++.+-..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 4456666788999999999999987533223445677899999999999999999988741 2333 35665544444
Q ss_pred HhCCH---------------HHHHHHHHHHHhcCCCCC
Q 003868 599 IHGNI---------------DLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 599 ~~g~~---------------~~a~~~~~~~~~~~p~~~ 621 (790)
..+|. ..|.+++.++.+.+|.-+
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 44431 245678888888887654
No 257
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.57 E-value=25 Score=41.74 Aligned_cols=118 Identities=16% Similarity=0.141 Sum_probs=67.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHH
Q 003868 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536 (790)
Q Consensus 457 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 536 (790)
.-.++.--+.|-+.+|..++..-.+.--..|.+...-+...+.+++|.-+|+..-+ ..-.+.+|-..|+|.
T Consensus 912 ~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr 982 (1265)
T KOG1920|consen 912 PECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWR 982 (1265)
T ss_pred HHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHH
Confidence 33444445556666666655543333334444445555556677777766665422 123456777777888
Q ss_pred HHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 003868 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP 585 (790)
Q Consensus 537 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 585 (790)
+|..+..++.. +-.--..+-..|+.-+...++.-+|-++..+....|
T Consensus 983 ~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen 983 EALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred HHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH
Confidence 87777776653 211122233566667777777777777776664333
No 258
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.26 E-value=3.8 Score=44.22 Aligned_cols=105 Identities=15% Similarity=0.144 Sum_probs=55.6
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHH
Q 003868 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539 (790)
Q Consensus 460 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 539 (790)
.+...++|+++.|.++-++.. +...|..|......+|+.+-|.+.|++..+ |..|+-.|.-.|+.+.-.
T Consensus 325 FeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred hHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 344556677777766665554 455677777777777777777776665443 445555555666665555
Q ss_pred HHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 003868 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582 (790)
Q Consensus 540 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 582 (790)
++.+..... |. ++.-...+.-.|+.++..+++.+.+
T Consensus 394 kl~~~a~~~-~~------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 394 KLAKIAEER-GD------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHHc-cC------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 555444432 11 2333333334455555555555443
No 259
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.19 E-value=4.5 Score=37.90 Aligned_cols=161 Identities=19% Similarity=0.129 Sum_probs=88.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHH
Q 003868 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562 (790)
Q Consensus 484 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 562 (790)
+..||-+.--+...|+++.|.+.|+...+ +.|.- .+...-.-++.-.|+++-|.+-|...-+...-.|-...|--++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 45677777777777888888888887776 34432 2222222234455777777665554433212223233332222
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-------CcchHhhHHHHHhcC
Q 003868 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH-------AGTYVLLSNMYANLG 635 (790)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g 635 (790)
.+.-+..+|..-+.+--.+.|..-|...+-.+.-..-.+ +.+++++.+-..++ ..+|..|+.-|...|
T Consensus 177 ---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 234456666544433212345555665554443221111 22333333332232 468999999999999
Q ss_pred ChhHHHHHHHHHHhCC
Q 003868 636 RWDDAARVRKLMRDRG 651 (790)
Q Consensus 636 ~~~~a~~~~~~m~~~g 651 (790)
..++|..+|+......
T Consensus 252 ~~~~A~~LfKLaiann 267 (297)
T COG4785 252 DLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 9999999999886543
No 260
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.97 E-value=4 Score=35.87 Aligned_cols=112 Identities=17% Similarity=0.115 Sum_probs=56.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhc
Q 003868 492 AALGQHGNGARAIELYEQMLKEGILPD---RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568 (790)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 568 (790)
....+.|++++|.+.|+.+... .... ...-..++.++.+.|++++|...++..++-+.-.|++ .|.....+++.-
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~ 95 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYY 95 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHH
Confidence 3344566666666666666653 1111 1344555666666666666666666665533333332 233333333322
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 003868 569 GKFSEAKDVIDSL-PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 569 g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
...+.. +..+ ..+-| .+....|...|++++...|++.
T Consensus 96 ~~~~~~---~~~~~~~drD-------------~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDEGS---LQSFFRSDRD-------------PTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhhH---HhhhcccccC-------------cHHHHHHHHHHHHHHHHCcCCh
Confidence 222111 1111 11111 1235678888999999999874
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.85 E-value=7.5 Score=42.61 Aligned_cols=111 Identities=18% Similarity=0.166 Sum_probs=54.1
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------CCHhHHHHHHHHHHhcCChHHHHH
Q 003868 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN-------VDSVSWNAMIAALGQHGNGARAIE 505 (790)
Q Consensus 433 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~ 505 (790)
+.+.+.+++..+.+. +|......-.-...+...|++++|.+.|++... .....+--+.-.+...+++++|.+
T Consensus 248 ~~~~a~~lL~~~~~~-yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR-YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 344555555555443 122222222223445556666666666664332 122233334445666677777777
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHH-HccCCH-------HHHHHHHHHc
Q 003868 506 LYEQMLKEGILPDRITFLTVLSAC-NHAGLV-------KEGRRYFETM 545 (790)
Q Consensus 506 ~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~-------~~a~~~~~~~ 545 (790)
.|.++.+.. .-...+|..+..+| ...|+. ++|.++|.++
T Consensus 327 ~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 327 YFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 777777632 22233343333333 234544 5555555544
No 262
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.82 E-value=1.4 Score=43.05 Aligned_cols=93 Identities=18% Similarity=0.250 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCCh-hHHHH
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDR----ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE-DHYAR 560 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~ 560 (790)
.|+.-+.. .+.|++.+|...|...++. -|+. ..+..|..++...|++++|..+|..+.+.|+-.|.. +.+--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 35554443 3456677777777777764 3433 234556666677777777777777666655444433 45555
Q ss_pred HHHHHHhcCChHHHHHHHHhC
Q 003868 561 FIDLLCRAGKFSEAKDVIDSL 581 (790)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~~ 581 (790)
|.....+.|+.++|...+++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 555555566666655555544
No 263
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.69 E-value=5.3 Score=40.44 Aligned_cols=219 Identities=11% Similarity=0.063 Sum_probs=125.1
Q ss_pred HHHcCCHHHHHHHHHHhccC------ChhHHHHHHHHHHhcCChHHHHHHHHH-HHHc-CCCCCH---HHHHHHHHHHHc
Q 003868 362 YVSAGLIDEAKSLFEAMRER------NLLSWTVMISGLAQNGYGEEGLKLFSQ-MRLE-GFKPCD---YAFAGAITSCAG 430 (790)
Q Consensus 362 ~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~-g~~p~~---~t~~~ll~~~~~ 430 (790)
+.+..+.++|+..+.+..++ -..+|..+..+..+.|.+++++..--. |.-. ...-.. ..|..+-.++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888777766653 124677777888888888877654322 2110 011111 123333333333
Q ss_pred cCChHHHHHHHHHHHHh-CCCC---chhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C--CHhHHHHHHHHHHhc
Q 003868 431 LGALENGRQLHAQLVHS-GYDS---SLSAGNALITMYARCGVVEAANCVFNTMPN-------V--DSVSWNAMIAALGQH 497 (790)
Q Consensus 431 ~g~~~~a~~i~~~~~~~-g~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~ 497 (790)
.-++.+++.+-..-... |..+ .-...-++..++...+.++++.+.|+...+ + ....+-.|.+.|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 33444444433332221 2222 123334466677777788888888876532 1 344677888888888
Q ss_pred CChHHHHHHHHHHHH----cCCCCChhhHHHHH-----HHHHccCCHHHHHHHHHHcccC---CCCCCC-hhHHHHHHHH
Q 003868 498 GNGARAIELYEQMLK----EGILPDRITFLTVL-----SACNHAGLVKEGRRYFETMHGP---YGIPPG-EDHYARFIDL 564 (790)
Q Consensus 498 g~~~~A~~~~~~m~~----~g~~p~~~t~~~ll-----~a~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~li~~ 564 (790)
.++++|+-+..+..+ -|+.--..-|..++ -++...|.+-.|.+..++..+- .|..+. .....++.|.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999998877766543 22222223444433 2455678888888887766442 233332 2344578888
Q ss_pred HHhcCChHHHHHHHHh
Q 003868 565 LCRAGKFSEAKDVIDS 580 (790)
Q Consensus 565 ~~~~g~~~~A~~~~~~ 580 (790)
|-..|+.|.|..-++.
T Consensus 256 yR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHhcccHhHHHHHHHH
Confidence 8888998888777665
No 264
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.49 E-value=29 Score=39.25 Aligned_cols=95 Identities=15% Similarity=0.271 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHcCCCC-----ChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHH
Q 003868 501 ARAIELYEQMLKEGILP-----DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAK 575 (790)
Q Consensus 501 ~~A~~~~~~m~~~g~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 575 (790)
+..+++|.+.-...+-| ........+..|.+.|-++|-.-++.+|-. ++.+|.-.--+.++.++|.
T Consensus 611 dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn---------~k~AL~lII~el~die~AI 681 (846)
T KOG2066|consen 611 DKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGN---------AKEALKLIINELRDIEKAI 681 (846)
T ss_pred hHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcc---------hHHHHHHHHHHhhCHHHHH
Confidence 45556665554433333 223344555566666666666666665531 2333333344556666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHH
Q 003868 576 DVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607 (790)
Q Consensus 576 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 607 (790)
++.++ +.|...|..|++-+...-.+-.++
T Consensus 682 efvKe---q~D~eLWe~LI~~~ldkPe~~~~l 710 (846)
T KOG2066|consen 682 EFVKE---QDDSELWEDLINYSLDKPEFIKAL 710 (846)
T ss_pred HHHHh---cCCHHHHHHHHHHhhcCcHHHHHH
Confidence 66665 457788888888776655444333
No 265
>PRK15331 chaperone protein SicA; Provisional
Probab=91.24 E-value=3 Score=37.57 Aligned_cols=82 Identities=13% Similarity=0.047 Sum_probs=39.9
Q ss_pred hcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 003868 465 RCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY 541 (790)
Q Consensus 465 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 541 (790)
..|++++|..+|.-+.- -+..-|..|..++-..+++++|+..|......+ .-|...+.....++...|+.+.|+..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHHH
Confidence 44555555555554321 234444555555555555555555555544422 12223334444455555555555555
Q ss_pred HHHccc
Q 003868 542 FETMHG 547 (790)
Q Consensus 542 ~~~~~~ 547 (790)
|.....
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 555443
No 266
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.22 E-value=8.9 Score=32.93 Aligned_cols=61 Identities=11% Similarity=0.176 Sum_probs=36.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCC
Q 003868 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449 (790)
Q Consensus 388 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~ 449 (790)
.-+..+.+.|+-++-.+++.++.+. -.+++..+..+..+|.+.|+..++.+++.++-+.|+
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3445555666667667777766542 356666777777777777777777777777777664
No 267
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.17 E-value=27 Score=38.30 Aligned_cols=122 Identities=14% Similarity=0.080 Sum_probs=74.3
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhccCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003868 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL---LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427 (790)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 427 (790)
+..+|..-+.--...|+.+.+.-+|+....+-. ..|-..+.-....|+.+-|-.++....+--++-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 456788888888888888888888888776532 35555555555557777777776655544333222221111122
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 003868 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473 (790)
Q Consensus 428 ~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 473 (790)
+-..|++..|..+++.+...- +.-+.+-..-+.+..+.|+.+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhh
Confidence 334578888888888877664 333333334455555666666665
No 268
>PRK09687 putative lyase; Provisional
Probab=91.07 E-value=19 Score=36.39 Aligned_cols=181 Identities=13% Similarity=0.081 Sum_probs=70.7
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCCh----HHHHHHHHHHHHcCCCCCHHHHHHH
Q 003868 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG----EEGLKLFSQMRLEGFKPCDYAFAGA 424 (790)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~l 424 (790)
++|.......+.++...|..+-...+..-+..+|...-..-+.++.+.|+. .++...+..+... .|+...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 344444444555555555432222222222333444444444444444432 3455555555332 3444444444
Q ss_pred HHHHHccCChHH--HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC-ChH
Q 003868 425 ITSCAGLGALEN--GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG-NGA 501 (790)
Q Consensus 425 l~~~~~~g~~~~--a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~ 501 (790)
+.++...+.-.. .......+...-..++..+-...+.++++.|+.+....+...+..+|...-...+.++.+.+ ...
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~ 191 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP 191 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH
Confidence 444443321110 01111111111112233444444555555554333333333333343333333333333332 123
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC
Q 003868 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534 (790)
Q Consensus 502 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 534 (790)
.+...+..+.. .+|...-...+.+..+.|+
T Consensus 192 ~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 192 DIREAFVAMLQ---DKNEEIRIEAIIGLALRKD 221 (280)
T ss_pred HHHHHHHHHhc---CCChHHHHHHHHHHHccCC
Confidence 34444444442 3344444444445555444
No 269
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.91 E-value=23 Score=37.15 Aligned_cols=150 Identities=11% Similarity=-0.004 Sum_probs=80.3
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHccCCHHHHHHHHHHcccC-CCCCCChhH
Q 003868 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP---DRITFLTVLSACNHAGLVKEGRRYFETMHGP-YGIPPGEDH 557 (790)
Q Consensus 482 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~ 557 (790)
....+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+..+|...++...+. ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 455678888888899999999999888887743222 2233333444555678888888887776652 111101111
Q ss_pred HHHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHHh------CCHHHHHHHHHHHHhcCCCCCcchHhhHHH
Q 003868 558 YARFIDLLCRAGKFSEAKDV-IDSLPFKPSAPIWEALLAGCRIH------GNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630 (790)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 630 (790)
...+...+.. ..+..... ........-..++..+..-+... ++.+.+...|+++.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111110000 00000000 00000000112333333333333 788889999999999999887777777766
Q ss_pred HHh
Q 003868 631 YAN 633 (790)
Q Consensus 631 ~~~ 633 (790)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 643
No 270
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.89 E-value=0.72 Score=42.31 Aligned_cols=87 Identities=14% Similarity=0.213 Sum_probs=67.0
Q ss_pred HHHhcCChHHHHHHHHhC----CCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCC
Q 003868 564 LLCRAGKFSEAKDVIDSL----PFKP---SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636 (790)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~----~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 636 (790)
-+.+.|++++|..-|... |.-+ ....|..-..+..+.+..+.|+....++++++|.+..+...-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355677777777666554 2111 123455555667788999999999999999999988888888999999999
Q ss_pred hhHHHHHHHHHHhC
Q 003868 637 WDDAARVRKLMRDR 650 (790)
Q Consensus 637 ~~~a~~~~~~m~~~ 650 (790)
+++|++-++++.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999764
No 271
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.50 E-value=0.81 Score=38.81 Aligned_cols=55 Identities=16% Similarity=0.125 Sum_probs=51.2
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 595 AGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 595 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
-+....|+.+.|++.|.+.+.+-|.++.+|+.-+.+|--.|+.++|+.-+++..+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999998875
No 272
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.31 E-value=46 Score=39.64 Aligned_cols=76 Identities=22% Similarity=0.224 Sum_probs=39.0
Q ss_pred HHHHHHCCCHHHHHHHHhhCCCC-ChhH--HHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHH
Q 003868 328 VTLYWKCGKVNEARDIFNQMPER-DLVS--WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404 (790)
Q Consensus 328 i~~~~~~g~~~~A~~~f~~m~~~-~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 404 (790)
+.+|..+|++.+|+.+-.++..+ |... -..|+.-+...++.-+|-++..+....-... +..|++...+++|+.
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~a----v~ll~ka~~~~eAlr 1047 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEA----VALLCKAKEWEEALR 1047 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHH----HHHHhhHhHHHHHHH
Confidence 44566666666666666666543 2221 2455666666666666666655544332222 223333334555555
Q ss_pred HHH
Q 003868 405 LFS 407 (790)
Q Consensus 405 ~~~ 407 (790)
+-.
T Consensus 1048 va~ 1050 (1265)
T KOG1920|consen 1048 VAS 1050 (1265)
T ss_pred HHH
Confidence 443
No 273
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.26 E-value=0.41 Score=30.76 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=20.3
Q ss_pred chHhhHHHHHhcCChhHHHHHHHHHH
Q 003868 623 TYVLLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 623 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888888888888888888854
No 274
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.11 E-value=0.6 Score=29.34 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 003868 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619 (790)
Q Consensus 589 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 619 (790)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777788888888888888888888774
No 275
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.63 E-value=5.2 Score=36.08 Aligned_cols=117 Identities=19% Similarity=0.164 Sum_probs=54.2
Q ss_pred HHHcCCHHHHHHHHHHhccCChhHHHHH-----HHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHH--HHccCC
Q 003868 362 YVSAGLIDEAKSLFEAMRERNLLSWTVM-----ISGLAQNGYGEEGLKLFSQMRLEGFKPCDY-AFAGAITS--CAGLGA 433 (790)
Q Consensus 362 ~~~~g~~~~A~~~~~~m~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~--~~~~g~ 433 (790)
+++.+..++|+..|..+.+.+--.|-.| .....+.|+..+|...|++.-.....|-.. -...+=.+ +...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 3555666666666666665544333333 334556677777777777766544344322 11111111 223444
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 003868 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478 (790)
Q Consensus 434 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 478 (790)
++......+.+...+-+.-...-.+|.-+-.|.|++.+|.+.|..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~q 192 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQ 192 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHH
Confidence 444444433333333222233333344444444444444444443
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.60 E-value=0.65 Score=29.83 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 003868 589 IWEALLAGCRIHGNIDLGIQAAEQLFQL 616 (790)
Q Consensus 589 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 616 (790)
+|..|...|...|++++|++++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678888899999999999999986644
No 277
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.71 E-value=6 Score=40.18 Aligned_cols=64 Identities=14% Similarity=0.189 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHccCC--HHHHHHHHHHcccCCCCCCChhHHHHHHHH
Q 003868 500 GARAIELYEQMLKEGILPDRI--TFLTVLSACNHAGL--VKEGRRYFETMHGPYGIPPGEDHYARFIDL 564 (790)
Q Consensus 500 ~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 564 (790)
.+.+..+|+.+.+.|+..+.. ....++..+..... +.++.++++.+.+. ++++...+|..+.-+
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHH
Confidence 356677788888877776553 33333333322222 45777888888876 888887777655443
No 278
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=88.54 E-value=3.7 Score=40.03 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=63.5
Q ss_pred HHHHHHhhCC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003868 339 EARDIFNQMP--ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416 (790)
Q Consensus 339 ~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 416 (790)
..++.|...+ ++|-.+|-+++..+....- -+.+..+-....++.|.+-|+.-
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sV--------------------------r~R~HveFIy~ALk~m~eyGVer 105 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSV--------------------------RGRTHVEFIYTALKYMKEYGVER 105 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhh--------------------------cccchHHHHHHHHHHHHHhcchh
Confidence 3455666666 5677777777766654310 01122343444455566666666
Q ss_pred CHHHHHHHHHHHHccC----------------ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 003868 417 CDYAFAGAITSCAGLG----------------ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468 (790)
Q Consensus 417 ~~~t~~~ll~~~~~~g----------------~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 468 (790)
|..+|..||+.+-+.. .-+-+..++++|...|+.||..+-..|++++++.+-
T Consensus 106 Dl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 106 DLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 6666666666554322 224567788888888888888888888888877664
No 279
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.85 E-value=1.6 Score=29.57 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI 520 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 520 (790)
+|..+...|...|++++|+++|++.++ ..|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 466677777777777888888777777 466654
No 280
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=87.68 E-value=40 Score=35.51 Aligned_cols=91 Identities=9% Similarity=0.101 Sum_probs=70.6
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCCCCh---HHHHHHHHHHhcCCChHHHHHHHhhCCCCCC
Q 003868 36 SVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDI---VARTTLIAAYSASDNVKLAREMFNKTPLKMR 112 (790)
Q Consensus 36 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 112 (790)
++-+++..+ +.|...|-.||.-|...+.+++-++++++|..|-+ .+|.--+++-....++.....+|.+-....-
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 444444433 56788999999999999999999999999998654 4688888877777889999999987655446
Q ss_pred CcchHHHHHHHHHhCC
Q 003868 113 DTVFYNAMITAYSHNS 128 (790)
Q Consensus 113 ~~~~~n~li~~~~~~g 128 (790)
++..|...+...-+.+
T Consensus 108 ~ldLW~lYl~YIRr~n 123 (660)
T COG5107 108 NLDLWMLYLEYIRRVN 123 (660)
T ss_pred cHhHHHHHHHHHHhhC
Confidence 7788888887655543
No 281
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.44 E-value=4 Score=35.92 Aligned_cols=54 Identities=15% Similarity=0.099 Sum_probs=44.8
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCC
Q 003868 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652 (790)
Q Consensus 599 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 652 (790)
..++.+.++.++..+.-+.|+.+..-..-++++...|+|+||.++++...+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 367888888888888888888888888888888888999999888888876553
No 282
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.20 E-value=3.8 Score=36.75 Aligned_cols=51 Identities=22% Similarity=0.253 Sum_probs=30.8
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 599 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
..++.+.++.++.-+.-+.|..+..-..-++.+...|+|++|.++++.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 445566666666666666666666555666666666666666666666544
No 283
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=86.91 E-value=37 Score=34.30 Aligned_cols=20 Identities=20% Similarity=-0.004 Sum_probs=13.0
Q ss_pred HHHHHhCCHHHHHHHHHHHH
Q 003868 595 AGCRIHGNIDLGIQAAEQLF 614 (790)
Q Consensus 595 ~~~~~~g~~~~a~~~~~~~~ 614 (790)
..+.+.++++.|...|+-.+
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 33456677777777777543
No 284
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.60 E-value=9.5 Score=34.47 Aligned_cols=120 Identities=15% Similarity=0.155 Sum_probs=59.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChh-HHHHH--HHHHHhcCC
Q 003868 495 GQHGNGARAIELYEQMLKEGILPDRI-TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED-HYARF--IDLLCRAGK 570 (790)
Q Consensus 495 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--i~~~~~~g~ 570 (790)
++.|..++|+.-|..+.+.|..--++ .-..........|+...|...|.++-.+ .-.|... -...| .-++...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhcccc
Confidence 45556666666666666554332221 1111222344566666666666666554 2222221 11111 123445666
Q ss_pred hHHHHHHHHhCCCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003868 571 FSEAKDVIDSLPFKPS---APIWEALLAGCRIHGNIDLGIQAAEQLFQ 615 (790)
Q Consensus 571 ~~~A~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 615 (790)
+++...-.+.+.-..+ ...-.+|.-+-.+.|++..|...|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6666666665522212 22334555555666777777777766654
No 285
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.22 E-value=33 Score=36.00 Aligned_cols=68 Identities=21% Similarity=0.313 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC----CCcchHhhHHHHHhcCChhHHHHHHHHHHhCCC
Q 003868 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH----HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652 (790)
Q Consensus 585 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 652 (790)
....+|..+...++++|+++.|...+.++....+. .+.....-+..+-..|+.++|...++......+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 34568999999999999999999999999886522 456777778899999999999999888876333
No 286
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.19 E-value=1.7 Score=27.22 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003868 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518 (790)
Q Consensus 485 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 518 (790)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4677778888888888888888888877 4554
No 287
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.18 E-value=3.1 Score=41.38 Aligned_cols=61 Identities=25% Similarity=0.302 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 589 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
++..++..+...|+.+.+...++++++.+|-+...|..|+.+|...|+...|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455666667778888888888888888888888888888888888888888888887765
No 288
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=85.93 E-value=36 Score=33.22 Aligned_cols=54 Identities=19% Similarity=0.121 Sum_probs=33.0
Q ss_pred HHHHHHcCCHHHHHHHHHHhccCCh------hHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003868 359 LSAYVSAGLIDEAKSLFEAMRERNL------LSWTVMISGLAQNGYGEEGLKLFSQMRLE 412 (790)
Q Consensus 359 i~~~~~~g~~~~A~~~~~~m~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 412 (790)
+..-.+.|++++|.+.|+.+....+ .+--.++.++-+.+++++|+..+++....
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3344556676666666666654322 23444555666677788888877776654
No 289
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.80 E-value=35 Score=32.93 Aligned_cols=82 Identities=16% Similarity=0.135 Sum_probs=42.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCC--hhHHHHHHHHH
Q 003868 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD--LVSWNAILSAY 362 (790)
Q Consensus 285 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~--~~~~~~li~~~ 362 (790)
|-....+|....+++.+...+....+ +.+.+...|. ....++.|.-+..+|.+-+ +.-++.-...|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~-----~yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK-----GYENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH-----HHHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44444566667778877776665553 1222222221 2233444544555544422 22455566677
Q ss_pred HHcCCHHHHHHHHHHh
Q 003868 363 VSAGLIDEAKSLFEAM 378 (790)
Q Consensus 363 ~~~g~~~~A~~~~~~m 378 (790)
.++|..+.|-..+++.
T Consensus 102 ~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKA 117 (308)
T ss_pred HHhCCcchHHHHHHHH
Confidence 7777766665555544
No 290
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.80 E-value=1.3 Score=44.02 Aligned_cols=112 Identities=13% Similarity=0.128 Sum_probs=77.6
Q ss_pred HHHHccCCHHHHHHHHHHcccCCCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCH
Q 003868 527 SACNHAGLVKEGRRYFETMHGPYGIPP-GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIHGNI 603 (790)
Q Consensus 527 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~ 603 (790)
.-|.+.|.+++|+..|..... ..| +..+|..-..+|.+..++..|+.=-... .+. .-...|.--+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 468999999999999998774 345 8888888899999999998877554433 111 0112333333444456889
Q ss_pred HHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHH
Q 003868 604 DLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645 (790)
Q Consensus 604 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 645 (790)
.+|.+-++.+++++|++ .-|-..|++.....|+.-+.+
T Consensus 182 ~EAKkD~E~vL~LEP~~----~ELkK~~a~i~Sl~E~~I~~K 219 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKN----IELKKSLARINSLRERKIATK 219 (536)
T ss_pred HHHHHhHHHHHhhCccc----HHHHHHHHHhcchHhhhHHhh
Confidence 99999999999999996 345555666555555544433
No 291
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.80 E-value=73 Score=36.58 Aligned_cols=117 Identities=14% Similarity=0.053 Sum_probs=64.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhccCChh---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 003868 357 AILSAYVSAGLIDEAKSLFEAMRERNLL---SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433 (790)
Q Consensus 357 ~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 433 (790)
.-+..+.+...++-|..+-+.-..+... ......+.+.+.|++++|...|-+-... +.|. .++.-+.....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHH
Confidence 3444555555555555554443322111 1222334455677888888777655432 3332 23444444455
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 003868 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480 (790)
Q Consensus 434 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 480 (790)
...-..+++.+.+.|+.. ...-+.|+.+|.|.++.++-.+..+...
T Consensus 413 IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 555556667777777543 3445667778887777777666555444
No 292
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.67 E-value=28 Score=31.74 Aligned_cols=120 Identities=13% Similarity=0.135 Sum_probs=83.3
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCCCChHHHHHHHHHHhcCC--ChHHHHHHHhhCCCCCC
Q 003868 35 RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASD--NVKLAREMFNKTPLKMR 112 (790)
Q Consensus 35 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~ 112 (790)
.+...-+.+.+++|+...+..++..+.+.|.+..-..++..-.-+|...-...+-.+.... -..-|..++.++..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~--- 90 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT--- 90 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh---
Confidence 3445566678999999999999999999999999888887766555554444443333221 24556667766662
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh
Q 003868 113 DTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE 164 (790)
Q Consensus 113 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 164 (790)
.+..++..+...|++-+|+++.+..... +......++.+....++
T Consensus 91 ---~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D 135 (167)
T PF07035_consen 91 ---AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSND 135 (167)
T ss_pred ---hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCC
Confidence 3788889999999999999999886422 22233445666555544
No 293
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.07 E-value=4 Score=40.61 Aligned_cols=76 Identities=21% Similarity=0.175 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcCCChHHHHHHHhhCCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHhhh-----CCCCCChhhHHHHH
Q 003868 83 ARTTLIAAYSASDNVKLAREMFNKTPLK-MRDTVFYNAMITAYSHNSNGHAAIELFRDMRR-----DDVKPDNFTFTSVL 156 (790)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ll 156 (790)
+++.++..+..+|+++.+.+.++++... +-+...|..++.+|.++|+...|+..|+.+.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4567888888999999999999987765 56778899999999999999999999998875 58888877766665
Q ss_pred HH
Q 003868 157 SA 158 (790)
Q Consensus 157 ~~ 158 (790)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 55
No 294
>PRK11619 lytic murein transglycosylase; Provisional
Probab=84.91 E-value=80 Score=36.27 Aligned_cols=113 Identities=11% Similarity=0.015 Sum_probs=54.7
Q ss_pred CChHHHHHHHHHHHHcC-CCCChh--hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHH
Q 003868 498 GNGARAIELYEQMLKEG-ILPDRI--TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574 (790)
Q Consensus 498 g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 574 (790)
.+.+.|..++.+..... ..+... ....+.......+..+++...+...... ..+......-+..-.+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHH
Confidence 34566777776654322 222221 2223322222222245556665554322 12333334444444467777777
Q ss_pred HHHHHhCCC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003868 575 KDVIDSLPF--KPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613 (790)
Q Consensus 575 ~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 613 (790)
...|..|+. +....-.--+..+....|+.+.|...|+++
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777642 111222223445555567777777777765
No 295
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.71 E-value=12 Score=34.85 Aligned_cols=59 Identities=15% Similarity=0.076 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCC------CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003868 454 SAGNALITMYARCGVVEAANCVFNTMPNV------DSVSWNAMIAALGQHGNGARAIELYEQMLK 512 (790)
Q Consensus 454 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 512 (790)
..+..+.+.|.+.|+.+.|.+.|.++.+. -...+-.+|......|++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34556677777777777777777776652 123455566666667777777776666554
No 296
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.46 E-value=63 Score=34.77 Aligned_cols=163 Identities=7% Similarity=0.074 Sum_probs=82.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 003868 452 SLSAGNALITMYARCGVVEAANCVFNTMPN--VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529 (790)
Q Consensus 452 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 529 (790)
|-....++++.++..-...-.+.+..+|.. .+-..|-.++..|.++ ..+.-..+|+++.+ ..-|.+.+..-+.-+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHHHH
Confidence 333444555555555555555555555543 3455566666666666 44566666666666 344454444444444
Q ss_pred HccCCHHHHHHHHHHcccCCCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHH
Q 003868 530 NHAGLVKEGRRYFETMHGPYGIPPG------EDHYARFIDLLCRAGKFSEAKDVIDSL----PFKPSAPIWEALLAGCRI 599 (790)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~ 599 (790)
...++.+.+..+|.++.. .+.|. .+.|.-|+... ..+.|.-..+..+. +...-.+.+.-+-.-|..
T Consensus 142 yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 444666666666666553 22331 22333333322 12333333333332 222223333344444555
Q ss_pred hCCHHHHHHHHHHHHhcCCCCC
Q 003868 600 HGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 600 ~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
..++++|+++...+++.+..|.
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~ 239 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDV 239 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhh
Confidence 6666777777766666654443
No 297
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.31 E-value=20 Score=40.93 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=20.5
Q ss_pred CeeeHHHHHHHHHhCCChhHHHHHHHhc
Q 003868 224 DELSWTTMMTGYVKNDYLDAAREFLDGM 251 (790)
Q Consensus 224 ~~~~~~~li~~~~~~g~~~~A~~l~~~m 251 (790)
+...|. +|--+.+.|++++|.++..+.
T Consensus 111 ~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~ 137 (613)
T PF04097_consen 111 GDPIWA-LIYYCLRCGDYDEALEVANEN 137 (613)
T ss_dssp TEEHHH-HHHHHHTTT-HHHHHHHHHHT
T ss_pred CCccHH-HHHHHHhcCCHHHHHHHHHHh
Confidence 455664 677889999999999999654
No 298
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.21 E-value=0.2 Score=44.85 Aligned_cols=125 Identities=10% Similarity=0.045 Sum_probs=76.6
Q ss_pred HHhhcCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCCCChHHHHHHHHHHhcCCChH
Q 003868 19 QLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVK 98 (790)
Q Consensus 19 ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 98 (790)
+++.+.+++. +......++.+...+...+....+.|+..|++.+..+...+++..... +-...++..+-+.|.++
T Consensus 13 vi~~~~~~~~--~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 13 VISAFEERNQ--PEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CHHHCTTTT---GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHhCCC--HHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 4555656666 777888888888877777888899999999999888888888774433 33455666666777777
Q ss_pred HHHHHHhhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhc
Q 003868 99 LAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALAL 161 (790)
Q Consensus 99 ~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 161 (790)
.|.-++.++.. |...+..+...++++.|.+.+... ++...|..+++.|..
T Consensus 88 ~a~~Ly~~~~~-------~~~al~i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~ 137 (143)
T PF00637_consen 88 EAVYLYSKLGN-------HDEALEILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLD 137 (143)
T ss_dssp HHHHHHHCCTT-------HTTCSSTSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCT
T ss_pred HHHHHHHHccc-------HHHHHHHHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHh
Confidence 77776665554 111111123334444444333322 345566666665543
No 299
>PRK12798 chemotaxis protein; Reviewed
Probab=84.14 E-value=60 Score=34.22 Aligned_cols=179 Identities=14% Similarity=0.185 Sum_probs=119.1
Q ss_pred cCCHHHHHHHHhcCCC----CCHhHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCChh----hHHHHHHHHHccCCHH
Q 003868 466 CGVVEAANCVFNTMPN----VDSVSWNAMIAALG-QHGNGARAIELYEQMLKEGILPDRI----TFLTVLSACNHAGLVK 536 (790)
Q Consensus 466 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~ 536 (790)
.|+.++|.+.+..+.. +....|-+|+.+-. ...++.+|+++|++..- .-|-.. ...--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6888889988888764 34556666766544 46689999999999876 456543 3444455678899999
Q ss_pred HHHHHHHHcccCCCCCCChhHHH-HHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003868 537 EGRRYFETMHGPYGIPPGEDHYA-RFIDLLCRAG---KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612 (790)
Q Consensus 537 ~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 612 (790)
++..+-......|...|-...|. .++..+.+.+ ..+.-.+++..|.-.--..+|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 98887777666666666544333 3344444433 3445556666664233345888888889999999999999999
Q ss_pred HHhcCCCCCcchHhhHHHHHhc-----CChhHHHHHHHHH
Q 003868 613 LFQLMPHHAGTYVLLSNMYANL-----GRWDDAARVRKLM 647 (790)
Q Consensus 613 ~~~~~p~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m 647 (790)
+..+..+ ...-...+..|... .+.++|.+.+..+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 9998633 34444555555443 3456666655554
No 300
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.05 E-value=29 Score=31.28 Aligned_cols=87 Identities=16% Similarity=0.091 Sum_probs=46.1
Q ss_pred HHccCCHHHHHHHHHHcccCCCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHhCCHHHH
Q 003868 529 CNHAGLVKEGRRYFETMHGPYGIPPGE-DHYARFIDLLCRAGKFSEAKDVIDSLP-FKPSAPIWEALLAGCRIHGNIDLG 606 (790)
Q Consensus 529 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a 606 (790)
-...++.+++..++..+. -+.|.. ..-..-...+.+.|++++|..+|+++. ..|....-.+|+..|.....-..=
T Consensus 20 al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 345556666666666665 234432 222233344566777777777777763 234445556666666554433333
Q ss_pred HHHHHHHHhcCC
Q 003868 607 IQAAEQLFQLMP 618 (790)
Q Consensus 607 ~~~~~~~~~~~p 618 (790)
....+++++..+
T Consensus 97 r~~A~evle~~~ 108 (160)
T PF09613_consen 97 RRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHhcCC
Confidence 334444555443
No 301
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.79 E-value=17 Score=33.80 Aligned_cols=95 Identities=15% Similarity=0.142 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHccCCHHHHHHHHHHcccCC--CCCCCh----h
Q 003868 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI--TFLTVLSACNHAGLVKEGRRYFETMHGPY--GIPPGE----D 556 (790)
Q Consensus 485 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~p~~----~ 556 (790)
..+..+..-|++.|+.+.|++.|.++.+....|... .+..++..+...+++..+..+..++.... +-.++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 467778899999999999999999999876666664 57788888889999999988887765421 111221 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC
Q 003868 557 HYARFIDLLCRAGKFSEAKDVIDSL 581 (790)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~ 581 (790)
.|..| .+...|++.+|-+.|-..
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHcc
Confidence 22222 234578899988888766
No 302
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.52 E-value=38 Score=32.45 Aligned_cols=91 Identities=14% Similarity=0.205 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHcccCC-CCCCChhHHHHHHH---HHHhcCChHHHHHHHHhCC---CCCCHHHHHH---HH--HHHHHh
Q 003868 533 GLVKEGRRYFETMHGPY-GIPPGEDHYARFID---LLCRAGKFSEAKDVIDSLP---FKPSAPIWEA---LL--AGCRIH 600 (790)
Q Consensus 533 g~~~~a~~~~~~~~~~~-~~~p~~~~~~~li~---~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~---ll--~~~~~~ 600 (790)
.++++|+..|+..-+-| |-+.+...-.|++. .-+..+++.+|+++|++.. ...+..-|.. ++ ..|.-.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 34455555555443322 22223333334443 3456788899999988762 2222222322 22 223333
Q ss_pred -CCHHHHHHHHHHHHhcCCCCCcc
Q 003868 601 -GNIDLGIQAAEQLFQLMPHHAGT 623 (790)
Q Consensus 601 -g~~~~a~~~~~~~~~~~p~~~~~ 623 (790)
.|.--+...+++..+++|.-..+
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccccc
Confidence 67777888899999999984433
No 303
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.40 E-value=92 Score=35.81 Aligned_cols=165 Identities=14% Similarity=0.086 Sum_probs=88.9
Q ss_pred CCHHHHHHHHccCCCCCeeeHHHH----HHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChh
Q 003868 208 SLMGAARRVFDEMPERDELSWTTM----MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEF 283 (790)
Q Consensus 208 g~~~~A~~~f~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~ 283 (790)
..++.|..+-+.-.. |...-..+ .+-+-+.|++++|..-|-+-. .-+.|
T Consensus 348 ~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI-----------------------~~le~--- 400 (933)
T KOG2114|consen 348 NLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI-----------------------GFLEP--- 400 (933)
T ss_pred hhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc-----------------------ccCCh---
Confidence 556666666543322 22222222 334456788999888876531 01122
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChh-HHHHHHHHH
Q 003868 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV-SWNAILSAY 362 (790)
Q Consensus 284 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~-~~~~li~~~ 362 (790)
+.++.-+........-...++.+.+ .|.. +...-+.|+.+|.|.++.+.-.++.+...+.... -....+..+
T Consensus 401 --s~Vi~kfLdaq~IknLt~YLe~L~~----~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Il 473 (933)
T KOG2114|consen 401 --SEVIKKFLDAQRIKNLTSYLEALHK----KGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEIL 473 (933)
T ss_pred --HHHHHHhcCHHHHHHHHHHHHHHHH----cccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHH
Confidence 2334444444444444555566666 4444 3445567888888888888887777776622111 133455556
Q ss_pred HHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003868 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410 (790)
Q Consensus 363 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (790)
.+.+-.++|..+-.+... +...... .+-..+++++|++.+..|.
T Consensus 474 r~snyl~~a~~LA~k~~~-he~vl~i---lle~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 474 RKSNYLDEAELLATKFKK-HEWVLDI---LLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHhChHHHHHHHHHHhcc-CHHHHHH---HHHHhcCHHHHHHHHhcCC
Confidence 666666666655554443 2222222 2334566777777776653
No 304
>PRK11619 lytic murein transglycosylase; Provisional
Probab=83.11 E-value=94 Score=35.70 Aligned_cols=415 Identities=8% Similarity=-0.002 Sum_probs=194.6
Q ss_pred ChhHHHHHhhhCCC-CC-hHHHHHHHHHHhcCCChHHHHHHHhhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 003868 65 KLVYARTLFDEIPQ-PD-IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR 142 (790)
Q Consensus 65 ~~~~A~~~~~~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 142 (790)
..++....+++.+. |- ...-..-+..+.+.+++....+.+..-+ .+...-.....+....|+.++|......+-.
T Consensus 81 ~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~~p---~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~ 157 (644)
T PRK11619 81 PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPEKP---KPVEARCNYYYAKWATGQQQEAWQGAKELWL 157 (644)
T ss_pred CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 34444445554443 22 1222334455556677777666332222 4444455666777777887777777777765
Q ss_pred CCCCCChhhHHHHHHHHhcchhhhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCC
Q 003868 143 DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE 222 (790)
Q Consensus 143 ~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~ 222 (790)
.|.. ....+..++..+. +.|.-.+..++.-+-.++.. |+...|..+...++.
T Consensus 158 ~g~~-~p~~cd~l~~~~~-----------------~~g~lt~~d~w~R~~~al~~----------~~~~lA~~l~~~l~~ 209 (644)
T PRK11619 158 TGKS-LPNACDKLFSVWQ-----------------QSGKQDPLAYLERIRLAMKA----------GNTGLVTYLAKQLPA 209 (644)
T ss_pred cCCC-CChHHHHHHHHHH-----------------HcCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHhcCh
Confidence 5522 2344454554443 33333333333333333322 667777776666632
Q ss_pred CCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHH---HHHHHHHccCChH
Q 003868 223 RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYT---SVISACANSGLFR 299 (790)
Q Consensus 223 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~---~ll~~~~~~~~~~ 299 (790)
........++..+. +...+..++.. +.|+...-. ..+.-+ ...+.+
T Consensus 210 ~~~~~a~a~~al~~---~p~~~~~~~~~---------------------------~~~~~~~~~~~~~~l~Rl-ar~d~~ 258 (644)
T PRK11619 210 DYQTIASALIKLQN---DPNTVETFART---------------------------TGPTDFTRQMAAVAFASV-ARQDAE 258 (644)
T ss_pred hHHHHHHHHHHHHH---CHHHHHHHhhc---------------------------cCCChhhHHHHHHHHHHH-HHhCHH
Confidence 21112222222221 22222222221 112221111 122222 234557
Q ss_pred HHHHHHHHHHHhcCCCCCCC--ChhHHHHHHHHHHHCCCHHHHHHHHhhCCCC--ChhHHHHHHHHHHHcCCHHHHHHHH
Q 003868 300 LGKQVHAYLLRTEAKPTPEF--SLPVNNALVTLYWKCGKVNEARDIFNQMPER--DLVSWNAILSAYVSAGLIDEAKSLF 375 (790)
Q Consensus 300 ~a~~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~ 375 (790)
.|...+...... ..+.. ...+...+..-....+...+|...++....+ |...+..-+..-.+.++++.+...+
T Consensus 259 ~A~~~~~~~~~~---~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i 335 (644)
T PRK11619 259 NARLMIPSLVRA---QKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWL 335 (644)
T ss_pred HHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHH
Confidence 777777765431 11111 1223334433333333356677777765432 4444444555556888888888888
Q ss_pred HHhccC--ChhH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHhCCCC
Q 003868 376 EAMRER--NLLS-WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL-ENGRQLHAQLVHSGYDS 451 (790)
Q Consensus 376 ~~m~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~i~~~~~~~g~~~ 451 (790)
..|.+. +... ..=+..++...|+.++|...|+..... . +|-.++.+ .+.|.. .-....... ....+..
T Consensus 336 ~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~---~fYG~LAa-~~Lg~~~~~~~~~~~~-~~~~~~~ 407 (644)
T PRK11619 336 ARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---R---GFYPMVAA-QRLGEEYPLKIDKAPK-PDSALTQ 407 (644)
T ss_pred HhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---CcHHHHHH-HHcCCCCCCCCCCCCc-hhhhhcc
Confidence 888652 2222 333456666788899998888887431 1 23333221 111211 000000000 0000010
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCChhhHHHHH
Q 003868 452 SLSAGNALITMYARCGVVEAANCVFNTMPN-VDSVSWNAMIAALGQHGNGARAIELYEQMLKEG----ILPDRITFLTVL 526 (790)
Q Consensus 452 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~t~~~ll 526 (790)
.. ...-+..+...|....|...+..+.. .+......+...-.+.|.++.++.........+ --| ..|...+
T Consensus 408 ~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp--~~~~~~~ 483 (644)
T PRK11619 408 GP--EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFP--LAWNDEF 483 (644)
T ss_pred Ch--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCC--cchHHHH
Confidence 11 11223445566777777777665443 344444445455556777777766654432210 011 1355666
Q ss_pred HHHHccCCHHHHHHHHHHcccCCCCCCChhH
Q 003868 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557 (790)
Q Consensus 527 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 557 (790)
..++....++.++-+ --+..+.++.|+..+
T Consensus 484 ~~~a~~~~v~~~lv~-ai~rqES~f~p~a~S 513 (644)
T PRK11619 484 RRYTSGKGIPQSYAM-AIARQESAWNPKARS 513 (644)
T ss_pred HHHHHHcCCCHHHHH-HHHHHhcCCCCCCcc
Confidence 666655555554432 222222366666543
No 305
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=82.89 E-value=4.3 Score=28.78 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=25.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc
Q 003868 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622 (790)
Q Consensus 592 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 622 (790)
.+.-++.+.|+++.|.+..+.+++.+|+|..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4556788999999999999999999999943
No 306
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=82.68 E-value=1.6 Score=38.94 Aligned_cols=86 Identities=19% Similarity=0.191 Sum_probs=63.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcC
Q 003868 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366 (790)
Q Consensus 287 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 366 (790)
.+++.+.+.+.+....+.++.+.. .+...+....+.++..|++.++.+...++++.... .-...++..+.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~----~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVK----ENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHH----TSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHh----cccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcc
Confidence 356667777888888888888887 66567789999999999999988998888885443 34455666777777
Q ss_pred CHHHHHHHHHHhc
Q 003868 367 LIDEAKSLFEAMR 379 (790)
Q Consensus 367 ~~~~A~~~~~~m~ 379 (790)
.+++|.-++.++.
T Consensus 85 l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 85 LYEEAVYLYSKLG 97 (143)
T ss_dssp SHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHcc
Confidence 7777766666554
No 307
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=82.58 E-value=60 Score=33.06 Aligned_cols=127 Identities=19% Similarity=0.295 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cC----ChHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCH
Q 003868 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG--LG----ALENGRQLHAQLVHSGY---DSSLSAGNALITMYARCGVV 469 (790)
Q Consensus 399 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~g----~~~~a~~i~~~~~~~g~---~~~~~~~~~li~~y~~~g~~ 469 (790)
+++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|.+.-. .++-..+.+|+.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 56667778888888887777776664443333 22 24567778888877521 1223333333322 33332
Q ss_pred ----HHHHHHHhcCCC-----CCHhHHHHHHHHHHhc-CC--hHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 003868 470 ----EAANCVFNTMPN-----VDSVSWNAMIAALGQH-GN--GARAIELYEQMLKEGILPDRITFLTVLS 527 (790)
Q Consensus 470 ----~~A~~~~~~~~~-----~~~~~~~~li~~~~~~-g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 527 (790)
+.++.+|+.+.+ .|..-+.+-+-++... .. ..++.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 334455554432 2333333333333221 11 4578999999999999988877665543
No 308
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.97 E-value=53 Score=32.06 Aligned_cols=150 Identities=19% Similarity=0.256 Sum_probs=79.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC------------C---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh
Q 003868 457 NALITMYARCGVVEAANCVFNTMPN------------V---DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521 (790)
Q Consensus 457 ~~li~~y~~~g~~~~A~~~~~~~~~------------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 521 (790)
+.|...|...|++.+-.+++.++.. + -...|..=|+.|....+-.+-..+|++...-.-......
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 3455555555555555555544421 0 123566667888888877777778887664222222233
Q ss_pred HHHHHHHHH-----ccCCHHHHHHHHHHcccCCCC--CCChh---HHHHHHHHHHhcCC----hHHHHHHHHhCCCC--C
Q 003868 522 FLTVLSACN-----HAGLVKEGRRYFETMHGPYGI--PPGED---HYARFIDLLCRAGK----FSEAKDVIDSLPFK--P 585 (790)
Q Consensus 522 ~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~--~p~~~---~~~~li~~~~~~g~----~~~A~~~~~~~~~~--p 585 (790)
...+++-|. +.|.+++|-.-|-++-+.|.- .|... -|..|..++.+.|- -++| -|.+ |
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEA------KPyKNdP 302 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEA------KPYKNDP 302 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCccccc------CCCCCCH
Confidence 445666663 567888876554444433322 22222 34556666766651 1222 1333 4
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 003868 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617 (790)
Q Consensus 586 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 617 (790)
.......|+.+|... ++. .|++++...
T Consensus 303 EIlAMTnlv~aYQ~N-dI~----eFE~Il~~~ 329 (440)
T KOG1464|consen 303 EILAMTNLVAAYQNN-DII----EFERILKSN 329 (440)
T ss_pred HHHHHHHHHHHHhcc-cHH----HHHHHHHhh
Confidence 445677788887544 333 455555443
No 309
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=81.92 E-value=15 Score=41.00 Aligned_cols=183 Identities=18% Similarity=0.235 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH----------HHHHHHHHHHccCChHHHHHHHHHHHHhC--CCCc
Q 003868 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY----------AFAGAITSCAGLGALENGRQLHAQLVHSG--YDSS 452 (790)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------t~~~ll~~~~~~g~~~~a~~i~~~~~~~g--~~~~ 452 (790)
+-..++-.|....+++..+++.+.++.- ||.. .|.-.++--.+-|+-++|..+.-.+++.. +.|
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap- 278 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP- 278 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC-
Confidence 4455555666666777777777777652 3221 23333443345577777777666665542 333
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh---hHHHHHHHH
Q 003868 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI---TFLTVLSAC 529 (790)
Q Consensus 453 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~ 529 (790)
++||-||++- +.|- +-+.|...+..+.|.+.|++.-+ +.|+.. .+..|+.+-
T Consensus 279 --------Dm~Cl~GRIY------KDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 279 --------DMYCLCGRIY------KDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred --------ceeeeechhh------hhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHh
Confidence 3566677642 2211 12334455566788888888877 788764 455555543
Q ss_pred HccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 003868 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609 (790)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 609 (790)
.+. ++...++- ..-..|-..++|.|.++.-.++++- .+.+.+-.-.+|+.+|.++
T Consensus 334 G~~--Fens~Elq-------------~IgmkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqA 388 (1226)
T KOG4279|consen 334 GEH--FENSLELQ-------------QIGMKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQA 388 (1226)
T ss_pred hhh--ccchHHHH-------------HHHHHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHH
Confidence 321 11111110 0112345567899998887777643 2345566677899999999
Q ss_pred HHHHHhcCCCCC
Q 003868 610 AEQLFQLMPHHA 621 (790)
Q Consensus 610 ~~~~~~~~p~~~ 621 (790)
.++++++.|+..
T Consensus 389 ae~mfKLk~P~W 400 (1226)
T KOG4279|consen 389 AEMMFKLKPPVW 400 (1226)
T ss_pred HHHHhccCCcee
Confidence 999999998863
No 310
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=81.39 E-value=43 Score=30.59 Aligned_cols=32 Identities=19% Similarity=0.155 Sum_probs=23.8
Q ss_pred HHhCccCChhhHHHHHHHHHccCChHHHHHHH
Q 003868 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305 (790)
Q Consensus 274 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 305 (790)
...+++|+...+..+++.+.+.|....-.++.
T Consensus 21 ~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 21 NQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 56778888888888888888888766555544
No 311
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.34 E-value=3.3 Score=25.44 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=17.0
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 003868 593 LLAGCRIHGNIDLGIQAAEQLFQLMPH 619 (790)
Q Consensus 593 ll~~~~~~g~~~~a~~~~~~~~~~~p~ 619 (790)
+..++...|+.++|.+.++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444555666666666666666666665
No 312
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.15 E-value=3.6 Score=25.52 Aligned_cols=31 Identities=35% Similarity=0.529 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 518 (790)
.|..+...+.+.|++++|++.|++..+ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 456677777778888888888887776 4454
No 313
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.85 E-value=1.9e+02 Score=37.75 Aligned_cols=304 Identities=12% Similarity=0.085 Sum_probs=167.2
Q ss_pred HHHHHHHHCCCHHHHHHHHhhC----CCCC-hhHHHH-HHHHHHHcCCHHHHHHHHHH-hccCChhHHHHHHHHHHhcCC
Q 003868 326 ALVTLYWKCGKVNEARDIFNQM----PERD-LVSWNA-ILSAYVSAGLIDEAKSLFEA-MRERNLLSWTVMISGLAQNGY 398 (790)
Q Consensus 326 ~li~~~~~~g~~~~A~~~f~~m----~~~~-~~~~~~-li~~~~~~g~~~~A~~~~~~-m~~~~~~~~~~li~~~~~~g~ 398 (790)
.|..+-.+|+.+..|...+++- .+.+ ...+.. +...|..-+++|...-+... ..+++ ...-|.-....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 4555677888888998888883 2211 122333 33367777777666655552 22222 2233455667889
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchh-HHHHHHHHHHhcCCHHHHHHHHh
Q 003868 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS-AGNALITMYARCGVVEAANCVFN 477 (790)
Q Consensus 399 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~~~ 477 (790)
+..|...|+.+.+.+ ++...+++.++......|.++......+...... .+... .++.=+.+--+.++++..+....
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999998764 3346678888887777787777766554444332 22222 22333444466777776666555
Q ss_pred cCCCCCHhHHHHH--HHHHHh--cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHc--------
Q 003868 478 TMPNVDSVSWNAM--IAALGQ--HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETM-------- 545 (790)
Q Consensus 478 ~~~~~~~~~~~~l--i~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~-------- 545 (790)
..+..+|.+. +..+.+ ..+.-.-.++.+.+++.-+.| +.+|+..|.+..+.++.-++
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 4455566554 222222 122222223444443321111 22222222222222211110
Q ss_pred --ccCCCCCCCh------hHHHHHHHHHHhcCChHHHHHH---HHhC----CCCC-----CHHHHHHHHHHHHHhCCHHH
Q 003868 546 --HGPYGIPPGE------DHYARFIDLLCRAGKFSEAKDV---IDSL----PFKP-----SAPIWEALLAGCRIHGNIDL 605 (790)
Q Consensus 546 --~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~---~~~~----~~~p-----~~~~~~~ll~~~~~~g~~~~ 605 (790)
....+..++. .-|..-+ .+.+....+.+- +++. ...| -..+|......++..|.++.
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl---~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRL---ERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHH---HHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 0011222322 1222211 122221112221 1111 1122 23589999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 606 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
|....-++.+..+ +..+.-.+..+-..|+-..|..++++-.+.
T Consensus 1689 A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1689 AQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9999888887774 468889999999999999999999988754
No 314
>PRK10941 hypothetical protein; Provisional
Probab=80.45 E-value=12 Score=37.39 Aligned_cols=62 Identities=19% Similarity=0.186 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 589 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
..+.|-.++.+.++++.|+++.+.++.+.|+++.-+.--+-+|.+.|.+..|..-++...++
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 35667778899999999999999999999999988888999999999999999988887653
No 315
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.93 E-value=34 Score=37.41 Aligned_cols=149 Identities=17% Similarity=0.090 Sum_probs=102.5
Q ss_pred hcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh-HHHHHHHHHccCCHHHHHHHHH
Q 003868 465 RCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT-FLTVLSACNHAGLVKEGRRYFE 543 (790)
Q Consensus 465 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~ 543 (790)
-.|+++.|-.++..++++ .-+.++.-+-+.|..++|+++ .||+.- |. ...+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFe----lal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFE----LALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhh----hhhhcCcHHHHHHHHH
Confidence 357788888777777643 233455556667777777653 444432 22 2346789999988877
Q ss_pred HcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcc
Q 003868 544 TMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623 (790)
Q Consensus 544 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 623 (790)
+.. +..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+.+.-..+.....+....|
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N--- 725 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN--- 725 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc---
Confidence 654 34568999999999999999999998753 26677777777888776666666555555544
Q ss_pred hHhhHHHHHhcCChhHHHHHHHHH
Q 003868 624 YVLLSNMYANLGRWDDAARVRKLM 647 (790)
Q Consensus 624 ~~~l~~~~~~~g~~~~a~~~~~~m 647 (790)
.--.+|...|+++++.+++.+-
T Consensus 726 --~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 --LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred --hHHHHHHHcCCHHHHHHHHHhc
Confidence 3334567889999999887654
No 316
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.26 E-value=1.2e+02 Score=34.32 Aligned_cols=78 Identities=10% Similarity=-0.095 Sum_probs=44.9
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhc---CChhHHHH
Q 003868 570 KFSEAKDVIDSLPFKPSAPIWEALLAGCRI----HGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL---GRWDDAAR 642 (790)
Q Consensus 570 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~ 642 (790)
+.+.+...+.+...+-+......|...|.. ..+.+.|...+.++-+.. +.....|+.++... ..+..|.+
T Consensus 454 ~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~ 530 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKR 530 (552)
T ss_pred chhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHH
Confidence 344455555554434444444444443322 235677777777776665 56666777776542 12688888
Q ss_pred HHHHHHhC
Q 003868 643 VRKLMRDR 650 (790)
Q Consensus 643 ~~~~m~~~ 650 (790)
++++..+.
T Consensus 531 ~~~~~~~~ 538 (552)
T KOG1550|consen 531 YYDQASEE 538 (552)
T ss_pred HHHHHHhc
Confidence 88887653
No 317
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.11 E-value=12 Score=30.12 Aligned_cols=63 Identities=13% Similarity=0.233 Sum_probs=48.9
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHH
Q 003868 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563 (790)
Q Consensus 499 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 563 (790)
+.-++.+-++.+....+.|++....+.+.||.+.+++.-|.++|+.++.+ ...+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 34466666777777789999999999999999999999999999988753 2334556776664
No 318
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=78.00 E-value=11 Score=26.67 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.0
Q ss_pred hHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 624 YVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 624 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
...++.++.+.|++++|.++.+.+.+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45678899999999999999999975
No 319
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=77.94 E-value=12 Score=37.70 Aligned_cols=86 Identities=15% Similarity=0.203 Sum_probs=61.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhc-
Q 003868 491 IAALGQHGNGARAIELYEQMLKEGILP-DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA- 568 (790)
Q Consensus 491 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~- 568 (790)
.+-|.++|.+++|+..|.+... +.| |.+++..-..||.+...+..|..-......- -...+.+|.|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHH
Confidence 4679999999999999999887 678 8899999999999999988887776665431 12345555554
Q ss_pred ------CChHHHHHHHHhC-CCCCCH
Q 003868 569 ------GKFSEAKDVIDSL-PFKPSA 587 (790)
Q Consensus 569 ------g~~~~A~~~~~~~-~~~p~~ 587 (790)
|+..||.+=.+.. .++|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 4555555444443 456664
No 320
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.92 E-value=50 Score=29.32 Aligned_cols=98 Identities=14% Similarity=0.095 Sum_probs=54.9
Q ss_pred HccCChHHHHHHHHHHHHhcCCCCCC-CChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCC-hhHHHHHHHHHHHcCCHHH
Q 003868 293 ANSGLFRLGKQVHAYLLRTEAKPTPE-FSLPVNNALVTLYWKCGKVNEARDIFNQMPERD-LVSWNAILSAYVSAGLIDE 370 (790)
Q Consensus 293 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~ 370 (790)
...++++.+..++..+.- ..+. +...++. .-.+...|++++|.++|+++.+.. ...|..-+.++|-...
T Consensus 21 L~~~d~~D~e~lLdALrv----LrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al--- 91 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV----LRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK--- 91 (153)
T ss_pred HhcCCHHHHHHHHHHHHH----hCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc---
Confidence 346777777777776654 2111 1222222 334567778888888888877644 3355554444444322
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003868 371 AKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410 (790)
Q Consensus 371 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (790)
+-..|..........+...++..+.+.+.
T Consensus 92 -----------~Dp~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 92 -----------GDAEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred -----------CChHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 12345555555556666666666666665
No 321
>PRK09687 putative lyase; Provisional
Probab=77.79 E-value=83 Score=31.79 Aligned_cols=120 Identities=12% Similarity=0.037 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 003868 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG--VVEAANCVFNTMPNVDSVSWNAMIAAL 494 (790)
Q Consensus 417 ~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~~~~~~~~~~li~~~ 494 (790)
+...-...+.++.+.++ +.+...+..+.+ .++..+-..-+.++++.+ ..+....+...+.++|...-...+.++
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aL 216 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGL 216 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 33444455555555554 334444444443 233344444444554432 222222233334445666666666667
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHccc
Q 003868 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547 (790)
Q Consensus 495 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 547 (790)
.+.|+ ..|+..+-+..+.+ + .....+.++...|.. +|...+..+.+
T Consensus 217 g~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 217 ALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 66666 35555555555432 1 233455566666653 45555555553
No 322
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.27 E-value=11 Score=34.40 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCC----hhHHHHHHHHH
Q 003868 603 IDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR----WDDAARVRKLM 647 (790)
Q Consensus 603 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m 647 (790)
+++|+.-+++++.++|+...++..++++|...+. ..+|.++|++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 4667778888899999999999999999988764 33444444444
No 323
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.16 E-value=57 Score=31.35 Aligned_cols=23 Identities=13% Similarity=-0.016 Sum_probs=16.9
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCC
Q 003868 598 RIHGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 598 ~~~g~~~~a~~~~~~~~~~~p~~ 620 (790)
...+++.+|+.+|+++....-+|
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 45678889999999887654444
No 324
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.04 E-value=2.6 Score=24.65 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=16.7
Q ss_pred chHhhHHHHHhcCChhHHHHHHH
Q 003868 623 TYVLLSNMYANLGRWDDAARVRK 645 (790)
Q Consensus 623 ~~~~l~~~~~~~g~~~~a~~~~~ 645 (790)
....|+.++...|++++|.++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45667777778888888777664
No 325
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.68 E-value=15 Score=36.54 Aligned_cols=96 Identities=15% Similarity=0.213 Sum_probs=64.8
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003868 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPN-------V--DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518 (790)
Q Consensus 448 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 518 (790)
|.+....+...++..-....+++++...+-+... + ..++|-.++. .=++++++.++..=++-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 4455555556666666666677777766655442 1 2333333332 3367788888888888888888
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHccc
Q 003868 519 RITFLTVLSACNHAGLVKEGRRYFETMHG 547 (790)
Q Consensus 519 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 547 (790)
..++..+++.+.+.+++.+|..+...|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 88888888888888888888887766654
No 326
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.02 E-value=69 Score=29.94 Aligned_cols=114 Identities=12% Similarity=0.062 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHcCCCCChhhH--HHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHH-----HHHHHHhcCChHHH
Q 003868 502 RAIELYEQMLKEGILPDRITF--LTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR-----FIDLLCRAGKFSEA 574 (790)
Q Consensus 502 ~A~~~~~~m~~~g~~p~~~t~--~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A 574 (790)
+.....+++....-+-...++ ..+...+...|++++|...++..... |..+.+.. |.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 555556666653211111122 22334567788899998888876642 22333333 44567788999999
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 003868 575 KDVIDSLPFKPS--APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 575 ~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 620 (790)
+..++... .++ ...-..-...+...|+-++|...|+++++.++++
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 99988763 121 1122233456778888888998888888876443
No 327
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=75.91 E-value=10 Score=30.95 Aligned_cols=61 Identities=11% Similarity=0.180 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHH
Q 003868 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564 (790)
Q Consensus 502 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 564 (790)
+..+-++.+....+.|++....+.+.||.+.+++.-|.++|+.++.+ ..+....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K--~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK--CGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TTT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccChHHHHHHHHHH
Confidence 55556666667778999999999999999999999999999988864 33334477777653
No 328
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=75.58 E-value=6.4 Score=23.25 Aligned_cols=31 Identities=19% Similarity=0.180 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 003868 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619 (790)
Q Consensus 589 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 619 (790)
.|..+...+...|+++.|...+++.++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3455555666666666666666666666553
No 329
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.51 E-value=26 Score=38.29 Aligned_cols=72 Identities=18% Similarity=0.117 Sum_probs=32.1
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 003868 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509 (790)
Q Consensus 430 ~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 509 (790)
+.|+++.|.++..+. .+..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+.+....+-..
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHHH
Confidence 445555555444332 2334455555555555555555555544322 33344444444444433333333
Q ss_pred HHH
Q 003868 510 MLK 512 (790)
Q Consensus 510 m~~ 512 (790)
..+
T Consensus 718 ~~~ 720 (794)
T KOG0276|consen 718 AKK 720 (794)
T ss_pred HHh
Confidence 333
No 330
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=75.49 E-value=16 Score=29.80 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=35.5
Q ss_pred hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhH
Q 003868 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628 (790)
Q Consensus 580 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 628 (790)
.+.+-|++.+..+.+.+|++.+|+..|.++++-+...-.+....|-.++
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 4457799999999999999999999999999998876555544666554
No 331
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=75.20 E-value=29 Score=30.14 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHh---CCHHHHHHHHHHHHh-cCCCCC-cchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 589 IWEALLAGCRIH---GNIDLGIQAAEQLFQ-LMPHHA-GTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 589 ~~~~ll~~~~~~---g~~~~a~~~~~~~~~-~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+--.+..++... .+..+++.+++.+++ -.|... .....|+-++.+.|++++++++.+.+.+
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 333444444333 455677777777775 344432 3445666777888888888888777754
No 332
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.10 E-value=4.3 Score=25.23 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=25.1
Q ss_pred cchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 622 GTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4678899999999999999999998865
No 333
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=74.57 E-value=17 Score=29.39 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=38.5
Q ss_pred HhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhH
Q 003868 579 DSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628 (790)
Q Consensus 579 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 628 (790)
-.+.+-|++.+..+-+.||++-+|+..|.++++-+...-.++...|-.++
T Consensus 34 ~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 34 FGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 34457799999999999999999999999999987755443444555543
No 334
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=73.68 E-value=8.1 Score=25.25 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Q 003868 590 WEALLAGCRIHGNIDLGIQAAEQLF 614 (790)
Q Consensus 590 ~~~ll~~~~~~g~~~~a~~~~~~~~ 614 (790)
++.|...|...|++++|+.++++++
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3444444444444444444444443
No 335
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=73.47 E-value=8.2 Score=25.21 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003868 485 VSWNAMIAALGQHGNGARAIELYEQMLK 512 (790)
Q Consensus 485 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 512 (790)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777776654
No 336
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=73.36 E-value=18 Score=33.12 Aligned_cols=46 Identities=11% Similarity=0.172 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCCccC
Q 003868 603 IDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKE 655 (790)
Q Consensus 603 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 655 (790)
+++|...|+++.+.+|+| ..|..-+.+. ++|-+++.++.++|....
T Consensus 96 F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~~~~~~q 141 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHKQGLGQQ 141 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHHSSS---
T ss_pred HHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHHHHhhhh
Confidence 567788888889999999 5555544443 568888888888876544
No 337
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=72.03 E-value=29 Score=36.74 Aligned_cols=122 Identities=12% Similarity=0.132 Sum_probs=70.3
Q ss_pred HhcCChHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHH
Q 003868 495 GQHGNGARAI-ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE 573 (790)
Q Consensus 495 ~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 573 (790)
...|+.-.|- +++.-+....-.|+.+-..+.| ..+.|+++.+.+.+....+ -+.....+..+++..+.+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 3456665554 3455555544455555444433 4667888888777776654 344455666777777777777777
Q ss_pred HHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 003868 574 AKDVIDSL-PFK-PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 574 A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 620 (790)
|...-..| +.+ -++.+...-...-...|-++++...+++++.+.|+.
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 77776665 211 122222222333345566677777777777666553
No 338
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=70.99 E-value=4.7 Score=24.73 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=24.3
Q ss_pred chHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 623 TYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 623 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567899999999999999999998753
No 339
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=70.46 E-value=20 Score=33.61 Aligned_cols=70 Identities=19% Similarity=0.157 Sum_probs=45.3
Q ss_pred HHHHHHHHhCCCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC----CCcchHhhHHHHHhcCChhHHH
Q 003868 572 SEAKDVIDSLPFKP--SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH----HAGTYVLLSNMYANLGRWDDAA 641 (790)
Q Consensus 572 ~~A~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~ 641 (790)
++|.+.|-.+.-.| +.+..-.-+..|....|.++++.++-+++++.++ |+..+..|+.+|.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44555555552122 2233334444555577888888888888887332 5778888888888888888774
No 340
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=69.65 E-value=4.8 Score=25.39 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHhcCChHHH
Q 003868 555 EDHYARFIDLLCRAGKFSEA 574 (790)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A 574 (790)
...|..+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 44444444444444444444
No 341
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.35 E-value=1e+02 Score=28.91 Aligned_cols=88 Identities=16% Similarity=0.081 Sum_probs=48.1
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhH--HHHHHHHHHhcCChHH
Q 003868 427 SCAGLGALENGRQLHAQLVHSGYDSS--LSAGNALITMYARCGVVEAANCVFNTMPNVDSVS--WNAMIAALGQHGNGAR 502 (790)
Q Consensus 427 ~~~~~g~~~~a~~i~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~ 502 (790)
.+...++++.|...++......-..+ ..+--.|.......|..|+|...++....++-.+ -..-.+.+...|+-++
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~ 177 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQE 177 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHH
Confidence 34455666666665555443211111 1112234455566677777777777766654333 2223445667777777
Q ss_pred HHHHHHHHHHcC
Q 003868 503 AIELYEQMLKEG 514 (790)
Q Consensus 503 A~~~~~~m~~~g 514 (790)
|..-|++.++.+
T Consensus 178 Ar~ay~kAl~~~ 189 (207)
T COG2976 178 ARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHcc
Confidence 777777777654
No 342
>PF13934 ELYS: Nuclear pore complex assembly
Probab=69.08 E-value=1.1e+02 Score=29.69 Aligned_cols=106 Identities=22% Similarity=0.258 Sum_probs=57.7
Q ss_pred HHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHH
Q 003868 487 WNAMIAALG--QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564 (790)
Q Consensus 487 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 564 (790)
|...+.||- .++++++|++++-.- .+.|+.. ..++.++...|+.+.|..+++.+... ..+......+...
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~---l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGPP---LSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCC---CCCHHHHHHHHHH
Confidence 344455543 466677777666221 1222222 13566666678888888888765421 2222333333333
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Q 003868 565 LCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601 (790)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g 601 (790)
..++.+.||..+-+....+-....|..++..|....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 456788888887777643222346666666665443
No 343
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=68.35 E-value=1.4e+02 Score=30.16 Aligned_cols=21 Identities=14% Similarity=0.091 Sum_probs=16.4
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 003868 628 SNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 628 ~~~~~~~g~~~~a~~~~~~m~ 648 (790)
+..+.+.++|++|.++++...
T Consensus 253 ~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHhhcCHHHHHHHHHHHH
Confidence 455678899999999998543
No 344
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.13 E-value=15 Score=36.20 Aligned_cols=60 Identities=17% Similarity=0.067 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 590 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.+.....|...|.+.+|.++.++++.++|-+...+-.|.+.|+..|+--.|.+-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 445567788999999999999999999999999999999999999998888887777743
No 345
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.06 E-value=66 Score=26.31 Aligned_cols=60 Identities=20% Similarity=0.194 Sum_probs=44.2
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH
Q 003868 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFL 523 (790)
Q Consensus 461 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 523 (790)
..+...|++++|..+.+....||...|-+|.. .+.|..+++..-+.+|..+| .|...+|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34567789999999999988899999987754 45677777777777777765 55555544
No 346
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=67.99 E-value=15 Score=38.94 Aligned_cols=87 Identities=16% Similarity=0.151 Sum_probs=68.6
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHH-HHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHH
Q 003868 563 DLLCRAGKFSEAKDVIDSL-PFKPSAPIWEALL-AGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA 640 (790)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 640 (790)
+-+.+.+.++.|..++.+. .+.|+...|-+.= .++.+.+++..|+.-+.++++.+|.....|..-+.++.+.+++.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 3445667777887777665 5677665544433 6677889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 003868 641 ARVRKLMRD 649 (790)
Q Consensus 641 ~~~~~~m~~ 649 (790)
...++.-..
T Consensus 92 ~~~l~~~~~ 100 (476)
T KOG0376|consen 92 LLDLEKVKK 100 (476)
T ss_pred HHHHHHhhh
Confidence 998887653
No 347
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=67.56 E-value=65 Score=30.15 Aligned_cols=28 Identities=4% Similarity=0.121 Sum_probs=21.0
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCCcc
Q 003868 596 GCRIHGNIDLGIQAAEQLFQLMPHHAGT 623 (790)
Q Consensus 596 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 623 (790)
+|-+...++.|++-|.++++.+|....+
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 4566677888888888888888876433
No 348
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=66.47 E-value=1.8e+02 Score=30.71 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=50.2
Q ss_pred CHHHHHHH---HHHHHHhCCHHHHHHHHHHHHhcCCC-CCcchHhhHHHHH-hcCChhHHHHHHHHHHh
Q 003868 586 SAPIWEAL---LAGCRIHGNIDLGIQAAEQLFQLMPH-HAGTYVLLSNMYA-NLGRWDDAARVRKLMRD 649 (790)
Q Consensus 586 ~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 649 (790)
|...|.++ +..+.+.|-+..|.+..+-++.++|. ||-.-..+++.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44555554 45677889999999999999999999 8877777788775 77888878888777654
No 349
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=65.51 E-value=31 Score=33.25 Aligned_cols=86 Identities=14% Similarity=0.154 Sum_probs=63.2
Q ss_pred HHHhcCChHHHHHHHHhC---------CCCCCHHHHHH-----------HHHHHHHhCCHHHHHHHHHHHHhcCCCCCcc
Q 003868 564 LLCRAGKFSEAKDVIDSL---------PFKPSAPIWEA-----------LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623 (790)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~---------~~~p~~~~~~~-----------ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 623 (790)
-+.+.|++.||..-+.+. ..+|-.+-|.- +-..+...|++-++++....++...|.|..+
T Consensus 187 ~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA 266 (329)
T KOG0545|consen 187 RLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKA 266 (329)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHH
Confidence 345566666665554432 23454444432 2334457799999999999999999999999
Q ss_pred hHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 624 YVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 624 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
|..-+.+.+..=+.++|.+-+.+..+
T Consensus 267 ~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 267 YFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 99999999998899999998888865
No 350
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=64.80 E-value=54 Score=30.86 Aligned_cols=74 Identities=16% Similarity=0.077 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhcCCHHHHH
Q 003868 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS---GYDSSLSAGNALITMYARCGVVEAAN 473 (790)
Q Consensus 399 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~---g~~~~~~~~~~li~~y~~~g~~~~A~ 473 (790)
-++|++.|-++...+.--+. .+-..+..|....+.+++++++-.+.+. +-.+|+.++.+|+..|-+.|+.+.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~-elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETA-ELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 36778888777776644343 3334444444466777888877776654 33567777778888888877777764
No 351
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.07 E-value=2.3e+02 Score=32.05 Aligned_cols=151 Identities=13% Similarity=0.059 Sum_probs=75.5
Q ss_pred hcCChHHHHHHHHHHHH-------cCCCCChhhHHHHHHHHHccC-----CHHHHHHHHHHcccCCCCCCChhHHHHHHH
Q 003868 496 QHGNGARAIELYEQMLK-------EGILPDRITFLTVLSACNHAG-----LVKEGRRYFETMHGPYGIPPGEDHYARFID 563 (790)
Q Consensus 496 ~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 563 (790)
...+.+.|+.+|+.+.+ .| +......+..+|.+.. +.+.|..++....+. | .|+...+-....
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-G-NPDAQYLLGVLY 335 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-C-CchHHHHHHHHH
Confidence 34455555555555544 44 2224444555554432 455677777666542 2 233322222221
Q ss_pred HHHh-cCChHHHHHHHHhCCCCCCH--HHHHHHHHHHH--HhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhc-CCh
Q 003868 564 LLCR-AGKFSEAKDVIDSLPFKPSA--PIWEALLAGCR--IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL-GRW 637 (790)
Q Consensus 564 ~~~~-~g~~~~A~~~~~~~~~~p~~--~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~ 637 (790)
..+. ..+...|.++|......-.. ..+.++.-... ...+.+.|...+.++-+..+ +.+...+...+.-. +++
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~ 413 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRY 413 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccccc
Confidence 1222 13456777777665322222 22222221111 33467788888888877763 33344444433322 778
Q ss_pred hHHHHHHHHHHhCCCc
Q 003868 638 DDAARVRKLMRDRGVK 653 (790)
Q Consensus 638 ~~a~~~~~~m~~~g~~ 653 (790)
+.+.-.+..+.+.|..
T Consensus 414 ~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 414 DTALALYLYLAELGYE 429 (552)
T ss_pred cHHHHHHHHHHHhhhh
Confidence 8877777777776654
No 352
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=62.96 E-value=30 Score=32.79 Aligned_cols=64 Identities=16% Similarity=0.148 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 003868 558 YARFIDLLCRAGKFSEAKDVIDS-LPFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
.+.-++.+.+.+++++|+...+. ...+| |...-..|+..++..|++++|..-++-+-++.|++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34456677788888888877654 34455 455667788888899999999888888888888764
No 353
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=62.96 E-value=2.8e+02 Score=31.79 Aligned_cols=48 Identities=19% Similarity=0.296 Sum_probs=26.9
Q ss_pred cCChHHHHHHHHhC----CCCC--CHHHHHHHHH-----HHHHhCCHHHHHHHHHHHHh
Q 003868 568 AGKFSEAKDVIDSL----PFKP--SAPIWEALLA-----GCRIHGNIDLGIQAAEQLFQ 615 (790)
Q Consensus 568 ~g~~~~A~~~~~~~----~~~p--~~~~~~~ll~-----~~~~~g~~~~a~~~~~~~~~ 615 (790)
.|+..|..+..... ...| ....|..+.. .+...|+.++|....++.-.
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 56666654444332 1122 3456744433 35667888888888776543
No 354
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=62.78 E-value=51 Score=35.01 Aligned_cols=131 Identities=16% Similarity=0.096 Sum_probs=81.5
Q ss_pred HHHHhcCCHHHHHH-HHhcCCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCH
Q 003868 461 TMYARCGVVEAANC-VFNTMPN----VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535 (790)
Q Consensus 461 ~~y~~~g~~~~A~~-~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 535 (790)
.--...|++-.|-+ +|..+.. |+.+...+.| +...|+++.++..+...... +-....+...+++.....|++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 33344677766543 4433322 4554444433 55679999999888766543 455667888899999999999
Q ss_pred HHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 003868 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PF-KPSAPIWEALLAG 596 (790)
Q Consensus 536 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~ 596 (790)
++|...-..|... .++ +.+....-...--..|-+|++.-.+++. .+ .|...-|..+++.
T Consensus 374 ~~a~s~a~~~l~~-eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 374 REALSTAEMMLSN-EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred HHHHHHHHHHhcc-ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence 9999998888764 332 3333222222233457788888888876 22 3444556655554
No 355
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.40 E-value=5.1 Score=40.40 Aligned_cols=86 Identities=19% Similarity=0.259 Sum_probs=48.6
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHH
Q 003868 569 GKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKL 646 (790)
Q Consensus 569 g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 646 (790)
|.+++|.+.|... +..| ....+..=.+++.+.++...|++-+..+++++|+...-|-.-+.+....|.|++|...+..
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 4444554444433 2222 2223333334455555566666666666677777666666666666666777777776666
Q ss_pred HHhCCCcc
Q 003868 647 MRDRGVKK 654 (790)
Q Consensus 647 m~~~g~~~ 654 (790)
..+.++..
T Consensus 208 a~kld~dE 215 (377)
T KOG1308|consen 208 ACKLDYDE 215 (377)
T ss_pred HHhccccH
Confidence 66655543
No 356
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.34 E-value=2.4e+02 Score=30.46 Aligned_cols=119 Identities=15% Similarity=0.067 Sum_probs=62.0
Q ss_pred HhcCChHHHHHHHHHHHHcC-CCCC--H-----HHHHHHHH-HHHccCChHHHHHHHHHHHHhCCCCch--hHHHHHHHH
Q 003868 394 AQNGYGEEGLKLFSQMRLEG-FKPC--D-----YAFAGAIT-SCAGLGALENGRQLHAQLVHSGYDSSL--SAGNALITM 462 (790)
Q Consensus 394 ~~~g~~~~A~~~~~~m~~~g-~~p~--~-----~t~~~ll~-~~~~~g~~~~a~~i~~~~~~~g~~~~~--~~~~~li~~ 462 (790)
.-.|+..+|++-..+|.+-- -.|. . .....++. -|...+-++.|+.-|..+.+.--..|. .....+.-.
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 34677778877777776531 1222 1 11122222 234556677777777666654333332 223345566
Q ss_pred HHhcCCHHHHHHHHhcCCCCCHhHHHHH--------HHHH--HhcCChHHHHHHHHHHHH
Q 003868 463 YARCGVVEAANCVFNTMPNVDSVSWNAM--------IAAL--GQHGNGARAIELYEQMLK 512 (790)
Q Consensus 463 y~~~g~~~~A~~~~~~~~~~~~~~~~~l--------i~~~--~~~g~~~~A~~~~~~m~~ 512 (790)
|.+.|+.+.-.++.+.+..++..++..- +.|+ ...+++.+|...+.+-.+
T Consensus 414 YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 7777777777777777765543333221 1111 234556666665555444
No 357
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=61.14 E-value=43 Score=29.69 Aligned_cols=51 Identities=14% Similarity=0.273 Sum_probs=41.8
Q ss_pred CCcchHHHHHHHHHhCCC-chHHHHHHHHhhhCCCCCChhhHHHHHHHHhcc
Q 003868 112 RDTVFYNAMITAYSHNSN-GHAAIELFRDMRRDDVKPDNFTFTSVLSALALI 162 (790)
Q Consensus 112 ~~~~~~n~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 162 (790)
.+-.+|++++.+.++... ---+..+|+-|.+.+.+++..-|..++.+|.+.
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 566789999999976665 445778899999888999999999999998665
No 358
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=60.89 E-value=2.3e+02 Score=30.14 Aligned_cols=58 Identities=17% Similarity=0.346 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003868 457 NALITMYARCGVVEAANCVFNTMPNV---DSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514 (790)
Q Consensus 457 ~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 514 (790)
..|+.-|.-.|++.+|.+..+++.-| ..+.+.+++.+.-+.|+-..-+.++++....|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 35667777778888888877766543 45667777777777777666666666665554
No 359
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.48 E-value=3.1e+02 Score=31.53 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHhhCCCCCh
Q 003868 323 VNNALVTLYWKCGKVNEARDIFNQMPERDL 352 (790)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~ 352 (790)
+...|+..|...+++..|..++-...++++
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 334477778888888888887777766543
No 360
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=60.12 E-value=1.1e+02 Score=32.40 Aligned_cols=121 Identities=13% Similarity=0.101 Sum_probs=63.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChh--hHHHHHHHHH--ccCCHHHHHHHHHHcccCCCCC--CChhHHHHHHHHHHh
Q 003868 494 LGQHGNGARAIELYEQMLKEGILPDRI--TFLTVLSACN--HAGLVKEGRRYFETMHGPYGIP--PGEDHYARFIDLLCR 567 (790)
Q Consensus 494 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~~~~~~--p~~~~~~~li~~~~~ 567 (790)
+...+++..|.++|+++... +.++.. .+..+..+|. ...++++|.+.++..... ... -....+..++...-.
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~-~~~l~~~~~~l~~~~~~~~~ 218 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR-DKALNQEREGLKELVEVLKA 218 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-hhhhHhHHHHHHHHHHHHHH
Confidence 34678899999999999886 555554 3444444444 456788899988877653 111 112233333333322
Q ss_pred cCChHHHHHHHHhCCCCCCH-HHHHHHHHHHH--HhCCHHHHHHHHHHHHhc
Q 003868 568 AGKFSEAKDVIDSLPFKPSA-PIWEALLAGCR--IHGNIDLGIQAAEQLFQL 616 (790)
Q Consensus 568 ~g~~~~A~~~~~~~~~~p~~-~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~ 616 (790)
...+.........-+.++.. .+..-+.++-+ ..|+++.|...+=+++|+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 219 LESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 22222222222111111111 23334444544 358888887766666553
No 361
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=59.84 E-value=2.4e+02 Score=30.02 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=54.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 003868 325 NALVTLYWKCGKVNEARDIFNQMPER---DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396 (790)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 396 (790)
..|+.-|.-.|++.+|.+...++.-| ..+.+-+++.+.-+.|+-...+.+++..-..+.+|-|.|-.+|.+-
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~RV 587 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFERV 587 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhhh
Confidence 45677788888888888888877654 4567788888888888877777777777777888888777777653
No 362
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=59.64 E-value=3.2e+02 Score=31.35 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=15.1
Q ss_pred HHHHHHhCCChhHHHHHHHh
Q 003868 231 MMTGYVKNDYLDAAREFLDG 250 (790)
Q Consensus 231 li~~~~~~g~~~~A~~l~~~ 250 (790)
....+.-.|+++.|++.+-+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHh
Confidence 34566778999999999986
No 363
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=59.62 E-value=1.9e+02 Score=28.79 Aligned_cols=125 Identities=10% Similarity=0.038 Sum_probs=58.5
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCChH-HHHHHHHHHHH---hC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 003868 408 QMRLEGFKPCDYAFAGAITSCAGLGALE-NGRQLHAQLVH---SG--YDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481 (790)
Q Consensus 408 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~-~a~~i~~~~~~---~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 481 (790)
-..+.+.++|......++..+...+.-+ .-.++...+++ .+ -.-++.....+...|.+.|++.+|+..|-.-.+
T Consensus 39 v~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~ 118 (260)
T PF04190_consen 39 VYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTD 118 (260)
T ss_dssp HHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-H
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCC
Confidence 3334455556555555555544433221 12223333332 21 223667788889999999999999988766544
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHccc
Q 003868 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547 (790)
Q Consensus 482 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 547 (790)
++...+..++.-....|...++- ... ...+--|...+++..|...+....+
T Consensus 119 ~~~~~~~~ll~~~~~~~~~~e~d--------------lfi-~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 119 PSAFAYVMLLEEWSTKGYPSEAD--------------LFI-ARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHHHHHHHHHHHHHTSS--HH--------------HHH-HHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcchh--------------HHH-HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44443322333222233332221 111 1122235556777777777665543
No 364
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=59.58 E-value=41 Score=32.33 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhCCHHH-------HHHHHHHHHhcC--CCC----CcchHhhHHHHHhcCChhHHHHHHHHHHhCCC
Q 003868 588 PIWEALLAGCRIHGNIDL-------GIQAAEQLFQLM--PHH----AGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652 (790)
Q Consensus 588 ~~~~~ll~~~~~~g~~~~-------a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 652 (790)
.++.-+...|+..|+.+. |.+.|+++++.+ |.. ......++.++.+.|+.++|.+.+.++...+-
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 356666777888887554 444455555442 221 34566889999999999999999999975433
No 365
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=59.32 E-value=1e+02 Score=30.66 Aligned_cols=87 Identities=15% Similarity=0.027 Sum_probs=47.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----
Q 003868 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR---- 465 (790)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~---- 465 (790)
|.+++..|++.+++...-+--+..-+.-....-..|-.|++.+....+.++-..-.+..-..+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 3445555556666655544433221222233444455567777777777766666655333444446666666654
Q ss_pred -cCCHHHHHHHH
Q 003868 466 -CGVVEAANCVF 476 (790)
Q Consensus 466 -~g~~~~A~~~~ 476 (790)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666666554
No 366
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=59.30 E-value=18 Score=29.19 Aligned_cols=42 Identities=14% Similarity=0.144 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 608 QAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 608 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
..+++.++.+|+|...-..++..+...|++++|.+.+-.+.+
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445666667777777777777777777777777777766654
No 367
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=58.89 E-value=1.1e+02 Score=25.68 Aligned_cols=26 Identities=12% Similarity=0.285 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 003868 386 WTVMISGLAQNGYGEEGLKLFSQMRL 411 (790)
Q Consensus 386 ~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (790)
|..++..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66777777777778888888887766
No 368
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=58.55 E-value=1e+02 Score=25.27 Aligned_cols=45 Identities=22% Similarity=0.223 Sum_probs=26.5
Q ss_pred HHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 003868 329 TLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375 (790)
Q Consensus 329 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 375 (790)
..+...|++++|..+.+.+.-||..+|-++-.. +.|..+++..-+
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl 91 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRL 91 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHH
Confidence 345566777777777777777777777665432 444433333333
No 369
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=58.39 E-value=16 Score=24.71 Aligned_cols=26 Identities=15% Similarity=0.311 Sum_probs=21.7
Q ss_pred HhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 625 VLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 625 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
..|+.+|...|+.+.|++++++....
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 35788999999999999999988753
No 370
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=56.71 E-value=4.4e+02 Score=32.00 Aligned_cols=48 Identities=10% Similarity=-0.027 Sum_probs=20.4
Q ss_pred ChhHHHHHHHHHHHCCCHHHHH-HHHhhCCCCChhHHHHHHHHHHHcCC
Q 003868 320 SLPVNNALVTLYWKCGKVNEAR-DIFNQMPERDLVSWNAILSAYVSAGL 367 (790)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~-~~f~~m~~~~~~~~~~li~~~~~~g~ 367 (790)
+..+-.+.+..+.+.|....+. .+...+.+++...-...+.++...+.
T Consensus 788 d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~ 836 (897)
T PRK13800 788 DPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA 836 (897)
T ss_pred CHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc
Confidence 3445555555555555443321 22223333343333344444444443
No 371
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.54 E-value=39 Score=26.78 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=14.7
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCC
Q 003868 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367 (790)
Q Consensus 335 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 367 (790)
|+.+.|.++++.++ +....|...+.++-+.|+
T Consensus 50 g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 50 GNESGARELLKRIV-QKEGWFSKFLQALRETEH 81 (88)
T ss_pred CcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCc
Confidence 44444444444444 444444444444444444
No 372
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.52 E-value=65 Score=32.37 Aligned_cols=51 Identities=8% Similarity=0.092 Sum_probs=43.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhC
Q 003868 398 YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG 448 (790)
Q Consensus 398 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g 448 (790)
+.++++.++..=.+-|+-||.+|++.+|+.+.+.+++..|.++...++...
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 367888888888888999999999999999999999988888877776653
No 373
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=55.33 E-value=3.6e+02 Score=30.60 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=27.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 003868 403 LKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447 (790)
Q Consensus 403 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~ 447 (790)
....+++...-.-.+.....-++..|.+.|-.+.+..+.+.+-..
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~ 434 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQR 434 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 444555554433445566677888888888888888887766544
No 374
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=55.00 E-value=36 Score=26.39 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=19.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHccCCHHHHHH
Q 003868 497 HGNGARAIELYEQMLKEGILPDR--ITFLTVLSACNHAGLVKEGRR 540 (790)
Q Consensus 497 ~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~ 540 (790)
..+.++|+..|+...+.-..|.. .++..++.+++..|.+.+.+.
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555554443222211 244444445555554444443
No 375
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=54.68 E-value=4.7e+02 Score=31.74 Aligned_cols=42 Identities=7% Similarity=0.047 Sum_probs=18.9
Q ss_pred HHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCCh
Q 003868 342 DIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383 (790)
Q Consensus 342 ~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 383 (790)
.+...+.++|...-...+..+.+.+..+....+...+.+++.
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~ 666 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAA 666 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCH
Confidence 333344455555555555555555543333333333333333
No 376
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=54.42 E-value=1.2e+02 Score=25.39 Aligned_cols=27 Identities=15% Similarity=0.369 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLK 512 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 512 (790)
-|..|+.-|..+|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467777778888888888888877766
No 377
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=54.19 E-value=27 Score=33.51 Aligned_cols=80 Identities=13% Similarity=0.128 Sum_probs=50.0
Q ss_pred ChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHH
Q 003868 570 KFSEAKDVIDSL-PFKPSAPIW-EALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647 (790)
Q Consensus 570 ~~~~A~~~~~~~-~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 647 (790)
+++.|..-+.+. -+.|+..+| ..=+-.+.+..+++.+..--++++++.|+.......|+........+++|...+.+.
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 344444443332 345655433 333334455667777777777777777777777777777777777777777777776
Q ss_pred Hh
Q 003868 648 RD 649 (790)
Q Consensus 648 ~~ 649 (790)
.+
T Consensus 105 ~s 106 (284)
T KOG4642|consen 105 YS 106 (284)
T ss_pred HH
Confidence 43
No 378
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=53.73 E-value=1.5e+02 Score=29.42 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=33.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhh-------HHHHHHHHHccCCHHHHH
Q 003868 491 IAALGQHGNGARAIELYEQMLKEGILPDRIT-------FLTVLSACNHAGLVKEGR 539 (790)
Q Consensus 491 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~a~~~~g~~~~a~ 539 (790)
.+-..+.+++++|+..+.+....|+..|..+ ...+...|...|+...-.
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~ 65 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLG 65 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHH
Confidence 3445667888999999999988888776643 445555666666554433
No 379
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.31 E-value=4.6e+02 Score=31.21 Aligned_cols=130 Identities=15% Similarity=0.127 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHH
Q 003868 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG 402 (790)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 402 (790)
-|..|+..|...|..++|.+++.+..+.+..+=.... ...+.-.+++.+...++....-.... ..-+.+.+.+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~------~~~e~ii~YL~~l~~~~~~Li~~y~~-wvl~~~p~~g 578 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQL------DGLEKIIEYLKKLGAENLDLILEYAD-WVLNKNPEAG 578 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchh------hhHHHHHHHHHHhcccchhHHHHHhh-hhhccCchhh
Confidence 4677888888888888888888877653211111111 11222334444443332211000000 0112335555
Q ss_pred HHHHHH---HHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 003868 403 LKLFSQ---MRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465 (790)
Q Consensus 403 ~~~~~~---m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 465 (790)
.++|.. -....+.++.+ -.+......+.+..+++.++...-..+....+.++..|++
T Consensus 579 i~Ift~~~~~~~~sis~~~V------l~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 579 IQIFTSEDKQEAESISRDDV------LNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred eeeeeccChhhhccCCHHHH------HHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 566554 11122333222 2334455566677777777766666667777777777764
No 380
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=52.93 E-value=45 Score=27.05 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=37.3
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCC---------CcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 598 RIHGNIDLGIQAAEQLFQLMPHH---------AGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 598 ~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.+.||+..|.+.+.+.++..... ..+...++.++...|++++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 46688888888877777653221 12334677788899999999999998864
No 381
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=52.24 E-value=43 Score=21.48 Aligned_cols=31 Identities=19% Similarity=0.043 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCHHHHHHH--HHHHHhcCCCC
Q 003868 590 WEALLAGCRIHGNIDLGIQA--AEQLFQLMPHH 620 (790)
Q Consensus 590 ~~~ll~~~~~~g~~~~a~~~--~~~~~~~~p~~ 620 (790)
|-++.-.+...|++++|+.+ ++-+..++|.|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 45566667778888888888 44666666543
No 382
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.91 E-value=24 Score=40.37 Aligned_cols=117 Identities=15% Similarity=0.216 Sum_probs=72.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHH
Q 003868 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576 (790)
Q Consensus 497 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 576 (790)
+.++++.+.+.+.-.--| .++|.-+.+.|-.+-|+.+.+.=..+ ..+...+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHH
Confidence 456666666554432222 23444455677777776665543322 223456889999988
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHH
Q 003868 577 VIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645 (790)
Q Consensus 577 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 645 (790)
.-++.. |..+|..|...-..+|+.+.|+..|++.... ..|+-+|.-.|+.++-.++.+
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf--------ekLsfLYliTgn~eKL~Km~~ 722 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNF--------EKLSFLYLITGNLEKLSKMMK 722 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh--------hheeEEEEEeCCHHHHHHHHH
Confidence 887765 6778999998888899999888888876433 334444444555554444333
No 383
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=50.47 E-value=60 Score=28.71 Aligned_cols=64 Identities=16% Similarity=0.100 Sum_probs=45.7
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCCh
Q 003868 571 FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRW 637 (790)
Q Consensus 571 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 637 (790)
-+.|.++.+-|+ ...............|++..|.++.+.++..+|+|...-...+++|...|.-
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 356777777775 3333444555667889999999999999999999988888888887766643
No 384
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=50.43 E-value=1.8e+02 Score=25.93 Aligned_cols=50 Identities=14% Similarity=0.253 Sum_probs=29.7
Q ss_pred CHhHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc
Q 003868 483 DSVSWNAMIAALGQHGN-GARAIELYEQMLKEGILPDRITFLTVLSACNHA 532 (790)
Q Consensus 483 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 532 (790)
+..+|.+++.+..+..- ---+..+|.-|.+.+.+++..-|..++.+|.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 44566666666644433 234556666666666666666676776666543
No 385
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=50.30 E-value=25 Score=21.15 Aligned_cols=29 Identities=14% Similarity=0.332 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHhhHH
Q 003868 601 GNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629 (790)
Q Consensus 601 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 629 (790)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677777888888777776666655543
No 386
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=50.07 E-value=81 Score=27.00 Aligned_cols=60 Identities=12% Similarity=0.254 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHH
Q 003868 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563 (790)
Q Consensus 502 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 563 (790)
+..+-++....-.+.|++......++||.+.+++..|.++|+.++.+ ..+....|..+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 44455566666779999999999999999999999999999998763 4444446766654
No 387
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=49.77 E-value=1.5e+02 Score=29.47 Aligned_cols=87 Identities=14% Similarity=0.109 Sum_probs=47.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHH---
Q 003868 491 IAALGQHGNGARAIELYEQMLKE--GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLL--- 565 (790)
Q Consensus 491 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~--- 565 (790)
|++++..|++.+++...-+--+. .+.|. .....|-.|++.+....+.++-..-.+.-+ .-...-|..++..|
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHH
Confidence 66777777777776654333221 12222 333344456777777776666655544311 11222366655554
Q ss_pred --HhcCChHHHHHHHHh
Q 003868 566 --CRAGKFSEAKDVIDS 580 (790)
Q Consensus 566 --~~~g~~~~A~~~~~~ 580 (790)
.-.|.++||++++..
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 446888888888744
No 388
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=49.54 E-value=44 Score=33.28 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=37.4
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHH
Q 003868 597 CRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647 (790)
Q Consensus 597 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 647 (790)
..+.|+.++|..+|+.++.+.|.++.....++......++.-+|.+++-+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 356677788888888888888888777777777777667777777766654
No 389
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=49.51 E-value=43 Score=36.55 Aligned_cols=101 Identities=13% Similarity=0.080 Sum_probs=65.5
Q ss_pred HHccCCHHHHHHHHHHcccCCCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCCHH
Q 003868 529 CNHAGLVKEGRRYFETMHGPYGIPPG--EDHYARFIDLLCRAGKFSEAKDVIDSL-PF-KPSAPIWEALLAGCRIHGNID 604 (790)
Q Consensus 529 ~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~ 604 (790)
+...|+.-.|...+..+.. ..|- ......|...+.+.|...+|-.++.+. .+ ...+.++..+.+++....+++
T Consensus 617 wr~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred eeecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 3456777777777666543 2332 123345566667777777777766543 22 234456777788888888888
Q ss_pred HHHHHHHHHHhcCCCCCcchHhhHHHHH
Q 003868 605 LGIQAAEQLFQLMPHHAGTYVLLSNMYA 632 (790)
Q Consensus 605 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 632 (790)
.|++.++.++++.|+++..-..|..+-+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 8888888888888888777666654433
No 390
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=49.12 E-value=2.3e+02 Score=26.50 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=37.7
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhC--------------CCCchhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 003868 423 GAITSCAGLGALENGRQLHAQLVHSG--------------YDSSLSAGNALITMYARCGVVEAANCVFNTM 479 (790)
Q Consensus 423 ~ll~~~~~~g~~~~a~~i~~~~~~~g--------------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 479 (790)
+++-.|.+.-++.+++++++.+.+.. ..+--.+.|.-...+.++|.+|.|..++++-
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 45556667777777777777765532 2234456677777778888888887777743
No 391
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=48.98 E-value=2.9e+02 Score=27.58 Aligned_cols=165 Identities=13% Similarity=0.048 Sum_probs=86.6
Q ss_pred CCHHHHHHHHccCCCCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHH
Q 003868 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTS 287 (790)
Q Consensus 208 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ 287 (790)
+++++|..++.. =...+.++|+...|-++-.-| |+.| ...++++|......
T Consensus 4 kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~ll-----------iev~-------~~~~~~~~~~~~~r 54 (260)
T PF04190_consen 4 KKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLL-----------IEVY-------EKSEDPVDEESIAR 54 (260)
T ss_dssp T-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHH-----------HHHH-------HHTT---SHHHHHH
T ss_pred ccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHH-----------HHHH-------HHcCCCCCHHHHHH
Confidence 667777766532 234566777777766665544 1121 23456666666566
Q ss_pred HHHHHHccCChH-HHHHHHHHHHHhc-CCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHc
Q 003868 288 VISACANSGLFR-LGKQVHAYLLRTE-AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA 365 (790)
Q Consensus 288 ll~~~~~~~~~~-~a~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 365 (790)
++..+...+.-+ .-.++...+++.. ......-++.....+...|.+.|++.+|+..|-.-.+++...+..++.-....
T Consensus 55 l~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~ 134 (260)
T PF04190_consen 55 LIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK 134 (260)
T ss_dssp HHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 665555443222 2333444444433 11223447788889999999999999999888776655555554444444444
Q ss_pred CCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003868 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412 (790)
Q Consensus 366 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 412 (790)
|...++-- .....+-.|.-.++...|...++...+.
T Consensus 135 ~~~~e~dl-----------fi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 135 GYPSEADL-----------FIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp TSS--HHH-----------HHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred cCCcchhH-----------HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44333211 1222344556667788888777766544
No 392
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=48.49 E-value=3.6e+02 Score=30.62 Aligned_cols=28 Identities=7% Similarity=-0.040 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHhhCCC
Q 003868 81 IVARTTLIAAYSASDNVKLAREMFNKTPL 109 (790)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 109 (790)
+.-|+ .+..+.-.|.++.|.+++.....
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~s~ 176 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLHSS 176 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TTTT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhccc
Confidence 45565 78888888999999999965544
No 393
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=48.42 E-value=31 Score=26.72 Aligned_cols=47 Identities=11% Similarity=0.068 Sum_probs=26.0
Q ss_pred ccCCHHHHHHHHHHcccCCCCCCCh-hHHHHHHHHHHhcCChHHHHHH
Q 003868 531 HAGLVKEGRRYFETMHGPYGIPPGE-DHYARFIDLLCRAGKFSEAKDV 577 (790)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~ 577 (790)
+....++|+..|....++..-.|+. .+..+|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666777666666542222322 3455666666666666665544
No 394
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=46.73 E-value=2.3e+02 Score=31.22 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC--CHhHH---HHHHHHHHhcCChHHHHHHHHHHH
Q 003868 457 NALITMYARCGVVEAANCVFNTMPNV--DSVSW---NAMIAALGQHGNGARAIELYEQML 511 (790)
Q Consensus 457 ~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~---~~li~~~~~~g~~~~A~~~~~~m~ 511 (790)
..|+.-|.+++++++|..++..|.-. ....| +.+.+.+.+..-..+....++.+.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~al 471 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAAL 471 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 35777899999999999999888631 22222 333344444433444444444444
No 395
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=46.71 E-value=40 Score=22.83 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=14.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 003868 490 MIAALGQHGNGARAIELYEQMLKE 513 (790)
Q Consensus 490 li~~~~~~g~~~~A~~~~~~m~~~ 513 (790)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445566666666666666665543
No 396
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=46.55 E-value=3.1e+02 Score=27.35 Aligned_cols=152 Identities=11% Similarity=0.003 Sum_probs=73.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHHccCChHHHHHHHHHHHH----hCCCCchhHHHHHHH
Q 003868 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYA-------FAGAITSCAGLGALENGRQLHAQLVH----SGYDSSLSAGNALIT 461 (790)
Q Consensus 393 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~~~g~~~~a~~i~~~~~~----~g~~~~~~~~~~li~ 461 (790)
..+.+++++|+..+.+....|+..|..+ ..-+...|...|+...-.+......+ -.-+..+.+..+|++
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLie 92 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIE 92 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHH
Confidence 3444556666666666666665555433 33455555555655443333222111 111223334444555
Q ss_pred HHHhc-CCHHHHHHHHhcCCC---C------CHhHHHHHHHHHHhcCChHHHHHHHH----HHHHcCCCCChhhHHHHH-
Q 003868 462 MYARC-GVVEAANCVFNTMPN---V------DSVSWNAMIAALGQHGNGARAIELYE----QMLKEGILPDRITFLTVL- 526 (790)
Q Consensus 462 ~y~~~-g~~~~A~~~~~~~~~---~------~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~g~~p~~~t~~~ll- 526 (790)
.+... ..++.-..+.....+ + -...=.-+|..+.+.|.+.+|+.+.. ++.+..-+|+.++...+=
T Consensus 93 kf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllES 172 (421)
T COG5159 93 KFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLES 172 (421)
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhH
Confidence 44332 233333333333221 0 01112346778889999999988654 444545566665543332
Q ss_pred HHHHccCCHHHHHHHHHH
Q 003868 527 SACNHAGLVKEGRRYFET 544 (790)
Q Consensus 527 ~a~~~~g~~~~a~~~~~~ 544 (790)
.+|....++.++..-+..
T Consensus 173 Kvyh~irnv~KskaSLTa 190 (421)
T COG5159 173 KVYHEIRNVSKSKASLTA 190 (421)
T ss_pred HHHHHHHhhhhhhhHHHH
Confidence 244444555554444433
No 397
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=46.23 E-value=59 Score=25.77 Aligned_cols=50 Identities=18% Similarity=0.280 Sum_probs=26.1
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCCh
Q 003868 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG 399 (790)
Q Consensus 350 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 399 (790)
.++.+....-.......+.++|.++++.++.++..+|..+..++...|..
T Consensus 28 ~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~ 77 (84)
T cd08326 28 RGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQT 77 (84)
T ss_pred cCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCch
Confidence 33333333333333445556666666666666666666666655555543
No 398
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.03 E-value=5.6e+02 Score=31.19 Aligned_cols=110 Identities=14% Similarity=0.117 Sum_probs=58.8
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC------------------------------CC--HhHHHHHHHHHHhcCChHHHHHH
Q 003868 459 LITMYARCGVVEAANCVFNTMPN------------------------------VD--SVSWNAMIAALGQHGNGARAIEL 506 (790)
Q Consensus 459 li~~y~~~g~~~~A~~~~~~~~~------------------------------~~--~~~~~~li~~~~~~g~~~~A~~~ 506 (790)
+..+|..+|+.-+|...|.+... +. ..-|-..++.+-+++..+.+.++
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQl 1005 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQL 1005 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 44457788888888888876532 01 12244556666667777777766
Q ss_pred HHHHHHcCCCCCh----hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChH
Q 003868 507 YEQMLKEGILPDR----ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572 (790)
Q Consensus 507 ~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 572 (790)
-...++. +.||. .+++.+..-....|.+-+|...+-..- ...-.......++-.++.+|.++
T Consensus 1006 A~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~np---dserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1006 AVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNP---DSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHhccchH
Confidence 6666553 33333 234445555555666665554433211 11112234445566666666544
No 399
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=45.11 E-value=1.6e+02 Score=23.72 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--CCcchHhhHHHHHhcCChh-HHHHHHHHHH
Q 003868 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH--HAGTYVLLSNMYANLGRWD-DAARVRKLMR 648 (790)
Q Consensus 586 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m~ 648 (790)
|......+...+...|+++.|++.+-.++..+|. +...-..|+.++...|.-+ -+.+++++|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~ 86 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLA 86 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 5566777888888899999999988888887665 3566778888888888754 5666666653
No 400
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=44.81 E-value=9.1e+02 Score=32.21 Aligned_cols=105 Identities=14% Similarity=0.162 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-----C-----CCCCHHH
Q 003868 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-----P-----FKPSAPI 589 (790)
Q Consensus 520 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~-----~~p~~~~ 589 (790)
.+|....+.+..+|.++.|...+-.+.+. + .| ..+.-....+...|+...|+.++++. + .++.+..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~-r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKES-R-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhc-c-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 46788888888899999998877766653 2 33 34556677788899999999888754 1 1111222
Q ss_pred HHHHHHH--------H-HHhCC--HHHHHHHHHHHHhcCCCCCcchHhhH
Q 003868 590 WEALLAG--------C-RIHGN--IDLGIQAAEQLFQLMPHHAGTYVLLS 628 (790)
Q Consensus 590 ~~~ll~~--------~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~ 628 (790)
-|.++.. | ...|+ .+.-++.|..+.+..|.....|..|+
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 2222222 1 12233 34567788888898887666666666
No 401
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=43.32 E-value=1.1e+02 Score=31.26 Aligned_cols=92 Identities=15% Similarity=0.208 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHH
Q 003868 556 DHYARFIDLLCRAGKFSEAKDVIDSL-P---FKP--SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629 (790)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 629 (790)
.+|.-=..-|.+..++..|...|.+- . -.| +.+.|+.=..+-.--|++..++.-..+++..+|.+...|..=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 34444556677888889998888764 1 123 34556665555566799999999999999999999999999899
Q ss_pred HHHhcCChhHHHHHHHHH
Q 003868 630 MYANLGRWDDAARVRKLM 647 (790)
Q Consensus 630 ~~~~~g~~~~a~~~~~~m 647 (790)
++....++++|..+.++.
T Consensus 162 c~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999998877777665544
No 402
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=42.73 E-value=2e+02 Score=24.00 Aligned_cols=78 Identities=13% Similarity=0.072 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003868 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE 513 (790)
Q Consensus 434 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 513 (790)
.++|..|.+.+...+- ....+.-.-+..+.+.|++++|...=.....||...|-+|-. .+.|..+++...+.++...
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 4555556555555442 122222222334456667777744444445567777765533 4556666666666666554
Q ss_pred C
Q 003868 514 G 514 (790)
Q Consensus 514 g 514 (790)
|
T Consensus 99 g 99 (116)
T PF09477_consen 99 G 99 (116)
T ss_dssp S
T ss_pred C
Confidence 3
No 403
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=41.93 E-value=1.1e+02 Score=24.35 Aligned_cols=62 Identities=18% Similarity=0.123 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCCCChHHHHHHHHHHhcCCChH
Q 003868 35 RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVK 98 (790)
Q Consensus 35 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 98 (790)
.++++.+.+.|+. +....+.+-.+-...|+.+.|++++..++ ..+..|..+++++-..|.-.
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHE 83 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchh
Confidence 4556666666633 22222222222223455555555555555 44445555555555544433
No 404
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=41.22 E-value=2.1e+02 Score=23.86 Aligned_cols=82 Identities=15% Similarity=0.111 Sum_probs=47.6
Q ss_pred cCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 003868 295 SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSL 374 (790)
Q Consensus 295 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~ 374 (790)
....++|..|.+.+.. .+. ....+--.-+..+.+.|++++|...=.....||..+|-+|-. .+.|..+++...
T Consensus 19 ~HcH~EA~tIa~wL~~----~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~ 91 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQ----EGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESR 91 (116)
T ss_dssp TT-HHHHHHHHHHHHH----TTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHh----CCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHH
Confidence 3456778888888776 332 223333334455677888888855555555678888877643 467776777766
Q ss_pred HHHhccCCh
Q 003868 375 FEAMRERNL 383 (790)
Q Consensus 375 ~~~m~~~~~ 383 (790)
+.++...+.
T Consensus 92 l~rla~~g~ 100 (116)
T PF09477_consen 92 LTRLASSGS 100 (116)
T ss_dssp HHHHCT-SS
T ss_pred HHHHHhCCC
Confidence 666655443
No 405
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=40.90 E-value=1.7e+02 Score=29.58 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=28.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChh---hHHHHHHHHHccCCHHHHHHHHHHc
Q 003868 491 IAALGQHGNGARAIELYEQMLKEGILPDRI---TFLTVLSACNHAGLVKEGRRYFETM 545 (790)
Q Consensus 491 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~ 545 (790)
..+-.+.|+..+|.+.|+.+.+. .|-.. .-..|+.+|.....+.+...++-+.
T Consensus 282 AMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 282 AMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344567777777777776653 33111 2234556665555555555554443
No 406
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=40.20 E-value=6.2e+02 Score=29.00 Aligned_cols=194 Identities=13% Similarity=0.114 Sum_probs=95.7
Q ss_pred CCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCCCCeeeHHHHHHHHH-hCCChhHHHHHHHhcccCCcchhh
Q 003868 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV-KNDYLDAAREFLDGMSENVGVAWN 260 (790)
Q Consensus 182 ~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~~~~~~~ 260 (790)
+.+..-|-.||.+-.+| ++.+.+-+.--++.+..++-.+...+. ...++++|...+.+-.
T Consensus 27 ~~~l~~Y~kLI~~ai~C-----------L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~-------- 87 (608)
T PF10345_consen 27 EEQLKQYYKLIATAIKC-----------LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAI-------- 87 (608)
T ss_pred hhhHHHHHHHHHHHHHH-----------HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------
Confidence 44555666666666666 222222111111124556666666666 5678888888887541
Q ss_pred HHHHhhhhhHHHHHHhCccCCh----h-hHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHH-HHHHHHC
Q 003868 261 ALISGYVHRELKMLMLRIQLDE----F-TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL-VTLYWKC 334 (790)
Q Consensus 261 ~li~~~~~~~~~m~~~~~~p~~----~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~ 334 (790)
...-.++- + .-..++..+.+.+... |.+..+..+......+..+-...+.-+ +..+...
T Consensus 88 --------------~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~ 152 (608)
T PF10345_consen 88 --------------LLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQH 152 (608)
T ss_pred --------------HhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhc
Confidence 11111111 1 1123344455554444 777777766532222222222333333 3333334
Q ss_pred CCHHHHHHHHhhCCC-------CChhHHHHHHHHHH--HcCCHHHHHHHHHHhcc-------------CChhHHHHHHHH
Q 003868 335 GKVNEARDIFNQMPE-------RDLVSWNAILSAYV--SAGLIDEAKSLFEAMRE-------------RNLLSWTVMISG 392 (790)
Q Consensus 335 g~~~~A~~~f~~m~~-------~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~-------------~~~~~~~~li~~ 392 (790)
++...|.+.++.+.. +-+...-.++.+.. +.+..+++.+.++.+.. +...+|..++..
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l 232 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDL 232 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence 788888888877653 22233333444333 34545566666655521 123456666554
Q ss_pred H--HhcCChHHHHHHHHHH
Q 003868 393 L--AQNGYGEEGLKLFSQM 409 (790)
Q Consensus 393 ~--~~~g~~~~A~~~~~~m 409 (790)
+ ...|+++.+...++++
T Consensus 233 ~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 233 CCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 4 4566666665555444
No 407
>PRK13342 recombination factor protein RarA; Reviewed
Probab=39.87 E-value=5.1e+02 Score=27.94 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=31.8
Q ss_pred HHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 003868 385 SWTVMISGLAQ---NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432 (790)
Q Consensus 385 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 432 (790)
.+..++.++.+ .++.+.|+..+..|.+.|..|....-..+..++-..|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34445555554 4778999999999999988887665555554444333
No 408
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=39.75 E-value=55 Score=25.95 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=20.0
Q ss_pred cCCChHHHHHHHhhCCCCCCCcchHHHHHHHHHhCCCc
Q 003868 93 ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNG 130 (790)
Q Consensus 93 ~~g~~~~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~ 130 (790)
...+.+.|.++++.++. ++...|.++..++-..|..
T Consensus 42 ~~tr~~q~~~LLd~L~~--RG~~AF~~F~~aL~~~~~~ 77 (84)
T cd08326 42 AGSRRDQARQLLIDLET--RGKQAFPAFLSALRETGQT 77 (84)
T ss_pred CCCHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhcCch
Confidence 33445556666666665 5555566666555555543
No 409
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=39.32 E-value=5.5e+02 Score=28.08 Aligned_cols=370 Identities=13% Similarity=0.107 Sum_probs=0.0
Q ss_pred CeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHH
Q 003868 224 DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ 303 (790)
Q Consensus 224 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 303 (790)
|+..|...|.-+-+.+.+.+.-.+|.+|. ...+-.||...+.+.=..=.... ++.++.
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l---------------------~~Hp~~~dLWI~aA~wefe~n~n-i~saRa 161 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAML---------------------AKHPNNPDLWIYAAKWEFEINLN-IESARA 161 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHH---------------------HhCCCCchhHHhhhhhHHhhccc-hHHHHH
Q ss_pred HHHHHHHhcCCCCCCCChhHHHHHHHHHHHCC------------------------------------------------
Q 003868 304 VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG------------------------------------------------ 335 (790)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g------------------------------------------------ 335 (790)
++...++ ..+. ++..|-...++-...-
T Consensus 162 lflrgLR----~npd-sp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~ 236 (568)
T KOG2396|consen 162 LFLRGLR----FNPD-SPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELS 236 (568)
T ss_pred HHHHHhh----cCCC-ChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchH
Q ss_pred -----------------------------CHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhcc--CChh
Q 003868 336 -----------------------------KVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE--RNLL 384 (790)
Q Consensus 336 -----------------------------~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~ 384 (790)
.-+.|.+.++-....+......+-.++--....+-...+|++..+ +...
T Consensus 237 ~~~~~d~~kel~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~s 316 (568)
T KOG2396|consen 237 VAEKFDFLKELQKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTES 316 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHH
Q ss_pred HHHHHHHHHHh-----cC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 003868 385 SWTVMISGLAQ-----NG-YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458 (790)
Q Consensus 385 ~~~~li~~~~~-----~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~ 458 (790)
.|+..|..|.. .| ....-+.+++.....+ .....-+...............+...-..+...++..+...+-.
T Consensus 317 m~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~-~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~ 395 (568)
T KOG2396|consen 317 MWECYITFCLERFTFLRGKRILHTMCVFRKAHELK-LLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQL 395 (568)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhc-ccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHH
Q ss_pred HHHHHHhc--CCHHHHHHHHhcCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH-HHHHHHccCC
Q 003868 459 LITMYARC--GVVEAANCVFNTMPN-VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLT-VLSACNHAGL 534 (790)
Q Consensus 459 li~~y~~~--g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~g~ 534 (790)
-+...... .---.-.+.|..... +-...+-....+..+..-....+.++-.....-..|+..|+.. ++.-+-..|-
T Consensus 396 kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~ 475 (568)
T KOG2396|consen 396 KLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGG 475 (568)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcc
Q ss_pred HHHHHHHHHHcccCCCCCCChhHHHHHHHH---HHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 003868 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDL---LCRAGKFSEAKDVIDSL--PFKPSAPIWEALLAGCRIHGNIDLGIQA 609 (790)
Q Consensus 535 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 609 (790)
.++|...+..+.. --+|+...|..+|.. ...+| +.-+.+.++.| .+-.|+..|...+.--..+|..+.+-.+
T Consensus 476 ~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~ 552 (568)
T KOG2396|consen 476 YKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQI 552 (568)
T ss_pred hHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHH
Q ss_pred HHHHHhc-CCCCCcch
Q 003868 610 AEQLFQL-MPHHAGTY 624 (790)
Q Consensus 610 ~~~~~~~-~p~~~~~~ 624 (790)
+.++... .|....++
T Consensus 553 ~~ra~ktl~~~~~~af 568 (568)
T KOG2396|consen 553 YWRAMKTLQGESAEAF 568 (568)
T ss_pred HHHHHHhhChhhhhcC
No 410
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=39.29 E-value=2.7e+02 Score=24.48 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=26.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 003868 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 591 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
.-|.-++.+.++++.++++.+.+++.+|+|.
T Consensus 75 yYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 75 YYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 3455678889999999999999999999984
No 411
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=39.26 E-value=3.6e+02 Score=25.90 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=18.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHccc
Q 003868 521 TFLTVLSACNHAGLVKEGRRYFETMHG 547 (790)
Q Consensus 521 t~~~ll~a~~~~g~~~~a~~~~~~~~~ 547 (790)
||--+..-+...|++++|..+|+-.+.
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 666677777777777777777776554
No 412
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=39.08 E-value=2e+02 Score=24.77 Aligned_cols=63 Identities=13% Similarity=0.099 Sum_probs=38.9
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH-HHHHHHHHhCCHHHHHHHHHH
Q 003868 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE-ALLAGCRIHGNIDLGIQAAEQ 612 (790)
Q Consensus 550 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~ 612 (790)
|-+--..+-.++..++.=.|..++|.++++..+.-++....| -++..|....+.++..++-++
T Consensus 61 GkP~kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 61 GKPCKLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred CCcccccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 333344556667777777888888888887776555544443 466666666666555554443
No 413
>PRK10941 hypothetical protein; Provisional
Probab=39.05 E-value=1.2e+02 Score=30.34 Aligned_cols=65 Identities=9% Similarity=0.019 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcc
Q 003868 559 ARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623 (790)
Q Consensus 559 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 623 (790)
+.+-..|.+.++++.|+...+.+ .+.| ++.-|.--.-.|.+-|....|..-++..++..|+++.+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 34555677788888888877776 3444 34456666666778888888888888888888887654
No 414
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=38.87 E-value=4.9e+02 Score=27.41 Aligned_cols=192 Identities=16% Similarity=0.164 Sum_probs=112.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHH-HHhcCChHHHHHHH--HHHHHcCCCCChhhHHHHH
Q 003868 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA-LGQHGNGARAIELY--EQMLKEGILPDRITFLTVL 526 (790)
Q Consensus 450 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~--~~m~~~g~~p~~~t~~~ll 526 (790)
..+..+...+++.+...++|+.--+ .+.. .-++|+...|+.-. +-|.-..-.||..|-..++
T Consensus 49 ~s~~kv~~~i~~lc~~~~~w~~Lne---------------~i~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li 113 (439)
T KOG1498|consen 49 ASNTKVLEEIMKLCFSAKDWDLLNE---------------QIRLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLI 113 (439)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHH---------------HHHHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHH
Confidence 3445556666777776666654322 2222 34566666665421 2232223456666655555
Q ss_pred HHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC------CHH--HHHHHHHHHH
Q 003868 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP------SAP--IWEALLAGCR 598 (790)
Q Consensus 527 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p------~~~--~~~~ll~~~~ 598 (790)
..... +-++ ++|-+.. ....-..|...+..+|++++|.+++.+.+.+. ... ...--++.|.
T Consensus 114 ~tLr~---Vteg-kIyvEvE-------RarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG 182 (439)
T KOG1498|consen 114 ETLRT---VTEG-KIYVEVE-------RARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCL 182 (439)
T ss_pred HHHHH---hhcC-ceEEeeh-------HHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 44321 0111 0111110 12233457778889999999999998875321 011 1112256788
Q ss_pred HhCCHHHHHHHHHHHHhcCCC--C-----CcchHhhHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCEE
Q 003868 599 IHGNIDLGIQAAEQLFQLMPH--H-----AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKV 667 (790)
Q Consensus 599 ~~g~~~~a~~~~~~~~~~~p~--~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~ 667 (790)
..+|+-.|.-+.+++....-+ + -..|..++.+..+.+.+=++-+.++...+.|..+...--|+.+-..+
T Consensus 183 ~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~i 258 (439)
T KOG1498|consen 183 LRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSI 258 (439)
T ss_pred HhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhh
Confidence 899999999988888654222 2 24788888888899999999999999988776655333455544333
No 415
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=37.73 E-value=1.2e+02 Score=28.64 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 003868 583 FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618 (790)
Q Consensus 583 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 618 (790)
..|++.++..++.++...|+.++|.+..+++..+.|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 457777777777777788888888877777777777
No 416
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=37.73 E-value=7.5e+02 Score=29.21 Aligned_cols=309 Identities=14% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCCCCC-hhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChh--HHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 003868 304 VHAYLLRTEAKPTPEFS-LPVNNALVTLYWKCGKVNEARDIFNQMPERDLV--SWNAILSAYVSAGLIDEAKSLFEAMRE 380 (790)
Q Consensus 304 ~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~ 380 (790)
+|..........++.++ ......-...+...|..++|.+.--...+|... .....-.-+...++..--+...+.++.
T Consensus 329 LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~ 408 (894)
T COG2909 329 LFAEFLRQRLQRELAARLKELHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPA 408 (894)
T ss_pred HHHHHHHhhhccccCCchhHHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCH
Q ss_pred CChhHHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--------HccCChHHHHHHHHHHHHh-
Q 003868 381 RNLLSWTVMISGLA----QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC--------AGLGALENGRQLHAQLVHS- 447 (790)
Q Consensus 381 ~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--------~~~g~~~~a~~i~~~~~~~- 447 (790)
+-...+..++-.++ ...++++|..+..+....=..|+...-..+...+ ...|+++.+.++-+.....
T Consensus 409 ~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L 488 (894)
T COG2909 409 ELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQL 488 (894)
T ss_pred HHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q ss_pred ---CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC----CHhHHHHHHHH-----HHhcC--ChHHHHHHHHHHHHc
Q 003868 448 ---GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV----DSVSWNAMIAA-----LGQHG--NGARAIELYEQMLKE 513 (790)
Q Consensus 448 ---g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~-----~~~~g--~~~~A~~~~~~m~~~ 513 (790)
-..+....+..+..+..-.|+.++|..+.....+. ++..+...... +..+| ...+.+..|......
T Consensus 489 ~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q 568 (894)
T COG2909 489 PEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQ 568 (894)
T ss_pred ccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q ss_pred CCCCChh------hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHH--HHHHHHHhcCChHHHHHHHHhC----
Q 003868 514 GILPDRI------TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA--RFIDLLCRAGKFSEAKDVIDSL---- 581 (790)
Q Consensus 514 g~~p~~~------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~~---- 581 (790)
...-... ++..++.++.+....+......-.....+...|-...+. +|+..+...|++++|...++++
T Consensus 569 ~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 569 HLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q ss_pred ---CCCCCHHHHHHHHHHH--HHhCCHHHHHHHHHH
Q 003868 582 ---PFKPSAPIWEALLAGC--RIHGNIDLGIQAAEQ 612 (790)
Q Consensus 582 ---~~~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~ 612 (790)
...++...-...++.- ...||.+.+.....+
T Consensus 649 ~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 649 LNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred cCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
No 417
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=37.66 E-value=91 Score=21.53 Aligned_cols=36 Identities=6% Similarity=0.015 Sum_probs=28.4
Q ss_pred HHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHH
Q 003868 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA 158 (790)
Q Consensus 123 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 158 (790)
...+.|-..++..++++|.+.|+..+...|..+++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 345678888889999999999988888888777653
No 418
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.59 E-value=7.8e+02 Score=29.38 Aligned_cols=39 Identities=23% Similarity=0.431 Sum_probs=32.6
Q ss_pred hHHHHHHHhhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 003868 97 VKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR 142 (790)
Q Consensus 97 ~~~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 142 (790)
+++...++.+-+. |..|+.-|...|..++|++++.+...
T Consensus 494 vee~e~~L~k~~~-------y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 494 VEEIETVLKKSKK-------YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred hHHHHHHHHhccc-------HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 5566666665555 99999999999999999999999875
No 419
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=37.59 E-value=1.4e+02 Score=25.64 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=37.7
Q ss_pred hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhh
Q 003868 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627 (790)
Q Consensus 580 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 627 (790)
.+.+-|++.+..+-+.+|++-+|+..|.++++-+...-++....|-.+
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 445779999999999999999999999999998876655544445444
No 420
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=37.08 E-value=3e+02 Score=26.85 Aligned_cols=55 Identities=7% Similarity=-0.067 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh-HHHHHHHHHccCCHHHHHHHHHH
Q 003868 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRIT-FLTVLSACNHAGLVKEGRRYFET 544 (790)
Q Consensus 488 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~ 544 (790)
+.-+..+.+..+++.+..--.+.++ +.||.+- -..+..+......+++|+..+++
T Consensus 48 tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 48 TNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3344444444555554444444444 4444432 12222233334444444444443
No 421
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=36.46 E-value=2e+02 Score=27.70 Aligned_cols=94 Identities=16% Similarity=0.180 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hhh--HHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHH
Q 003868 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPD---RIT--FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA 559 (790)
Q Consensus 485 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t--~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 559 (790)
.-.|.|+--|.-+..+.+|.+.|.. +.|+.|. ..+ =..-+......|++++|.+....+... -+..|.+.+-
T Consensus 27 ~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F 103 (228)
T KOG2659|consen 27 EDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFF 103 (228)
T ss_pred hhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHH
Confidence 3445555555555555556555543 3445552 222 233455567778888888887776543 3344433332
Q ss_pred HHHH----HHHhcCChHHHHHHHHhC
Q 003868 560 RFID----LLCRAGKFSEAKDVIDSL 581 (790)
Q Consensus 560 ~li~----~~~~~g~~~~A~~~~~~~ 581 (790)
.|.. -+.|.|..++|+++.+.-
T Consensus 104 ~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 104 HLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2222 256788888888888763
No 422
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=36.05 E-value=71 Score=30.11 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=14.9
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 003868 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581 (790)
Q Consensus 552 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 581 (790)
.|+...|..++..+...|+.++|.+..+++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555555555555555554444443
No 423
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=35.91 E-value=1.2e+02 Score=24.48 Aligned_cols=36 Identities=8% Similarity=0.208 Sum_probs=23.0
Q ss_pred HHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 003868 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNG 397 (790)
Q Consensus 362 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 397 (790)
.......+++.++++.++.++..+|..+..++...+
T Consensus 44 ~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~ 79 (90)
T cd08332 44 MAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETS 79 (90)
T ss_pred HcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcC
Confidence 334455667777777777777777777666665444
No 424
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=35.84 E-value=67 Score=30.80 Aligned_cols=56 Identities=23% Similarity=0.333 Sum_probs=40.1
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 003868 565 LCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 565 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 620 (790)
..+.|+.+.|.+++.+. ...| ....|--+...--+.|+.+.|-+.+++.++++|++
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 44566777777777665 3334 44567777777778888888888888888888776
No 425
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=35.42 E-value=57 Score=31.21 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=49.5
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 597 CRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 597 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
..+.+|.+.+-+++.+++++-|+....|..++..-.++|+.+.|.+-+++..+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 346789999999999999999999999999999999999999999999988763
No 426
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=34.90 E-value=1.6e+02 Score=23.75 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=16.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhc
Q 003868 593 LLAGCRIHGNIDLGIQAAEQLFQL 616 (790)
Q Consensus 593 ll~~~~~~g~~~~a~~~~~~~~~~ 616 (790)
+.......|+.++|...+++++++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444456667777777777777765
No 427
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.33 E-value=4.6e+02 Score=30.80 Aligned_cols=131 Identities=16% Similarity=0.147 Sum_probs=86.3
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHH
Q 003868 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540 (790)
Q Consensus 461 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 540 (790)
.....||+++.|.+.-..+. |...|..|+..-..+|+.+-|+-.|++... |..|--.|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 34557888888888776665 566899999999999999999998888765 2333334556788887766
Q ss_pred HHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003868 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615 (790)
Q Consensus 541 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 615 (790)
+-+.+.. ..|... ....-.-.|+.++=.++++..+..|-. |. .-..+|.-++|.++.+++-.
T Consensus 720 m~~iae~----r~D~~~---~~qnalYl~dv~ervkIl~n~g~~~la--yl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 720 MMKIAEI----RNDATG---QFQNALYLGDVKERVKILENGGQLPLA--YL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHh----hhhhHH---HHHHHHHhccHHHHHHHHHhcCcccHH--HH----HHhhcCcHHHHHHHHHhhcc
Confidence 6554432 122211 111112368888888888887744422 21 12467888889988888765
No 428
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=33.36 E-value=50 Score=28.63 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=25.0
Q ss_pred CCCchHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 003868 127 NSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL 159 (790)
Q Consensus 127 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 159 (790)
-|.-.+|-.+|+.|+++|-.||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 36667899999999999998875 77777654
No 429
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.04 E-value=5.5e+02 Score=28.59 Aligned_cols=121 Identities=16% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHccCCHHHHHHHHHHcccCCCCCCC------------hhHHHHHHHHHHhcCChHHHHHHHHhC---------------
Q 003868 529 CNHAGLVKEGRRYFETMHGPYGIPPG------------EDHYARFIDLLCRAGKFSEAKDVIDSL--------------- 581 (790)
Q Consensus 529 ~~~~g~~~~a~~~~~~~~~~~~~~p~------------~~~~~~li~~~~~~g~~~~A~~~~~~~--------------- 581 (790)
+.+...++++..-|..... -..|+ +.+.-.+.+++-..|+.+-|.+++++.
T Consensus 248 ~~hs~sYeqaq~~F~~av~--~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~ 325 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVI--VHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPF 325 (665)
T ss_pred eecchHHHHHHHHHHHHHh--hcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccc
Q ss_pred --------CCCCCHHHHHHH---HHHHHHhCCHHHHHHHHHHHHhcCCC-CCcchHhhHHHHH-hcCChhHHHHHHHHHH
Q 003868 582 --------PFKPSAPIWEAL---LAGCRIHGNIDLGIQAAEQLFQLMPH-HAGTYVLLSNMYA-NLGRWDDAARVRKLMR 648 (790)
Q Consensus 582 --------~~~p~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~ 648 (790)
...-|-..|.+| +....+.|-+..|.+..+-++.++|. ||-....+++.|+ ++.++.=-+++++..+
T Consensus 326 sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 326 SGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred cccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred hCC
Q 003868 649 DRG 651 (790)
Q Consensus 649 ~~g 651 (790)
...
T Consensus 406 ~~n 408 (665)
T KOG2422|consen 406 NMN 408 (665)
T ss_pred hhc
No 430
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.73 E-value=57 Score=24.02 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHcc
Q 003868 520 ITFLTVLSACNHAGLVKEGRRYFETMH 546 (790)
Q Consensus 520 ~t~~~ll~a~~~~g~~~~a~~~~~~~~ 546 (790)
.--..++.++...|++++|.++.+.+.
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333444555555555555555554443
No 431
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=32.52 E-value=5.3e+02 Score=25.93 Aligned_cols=49 Identities=8% Similarity=-0.030 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcC---------------ChhHHHHHHHHHHhCCC
Q 003868 601 GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLG---------------RWDDAARVRKLMRDRGV 652 (790)
Q Consensus 601 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~m~~~g~ 652 (790)
.|.++|...|+++-+... ......++ .+...| +...|...+......|.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred cCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 366677777777766655 34444444 444444 66667777776665544
No 432
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=32.45 E-value=5.6e+02 Score=26.20 Aligned_cols=83 Identities=16% Similarity=0.000 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHcccCCCC---CCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 003868 534 LVKEGRRYFETMHGPYGI---PPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610 (790)
Q Consensus 534 ~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 610 (790)
-.++|.+.|+.......- ..+......+.....+.|..++-..+++.....++...-..++.+.....+.+...+++
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 367888888887763111 34566667777777788887766666666554567777888899988888988888888
Q ss_pred HHHHhc
Q 003868 611 EQLFQL 616 (790)
Q Consensus 611 ~~~~~~ 616 (790)
+.++.-
T Consensus 225 ~~~l~~ 230 (324)
T PF11838_consen 225 DLLLSN 230 (324)
T ss_dssp HHHHCT
T ss_pred HHHcCC
Confidence 888874
No 433
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=32.44 E-value=43 Score=29.05 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=25.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 003868 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529 (790)
Q Consensus 495 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 529 (790)
...|.-.+|..+|++|++.|-.||. |+.|+.++
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456667899999999999999985 55666544
No 434
>PHA02875 ankyrin repeat protein; Provisional
Probab=32.38 E-value=6.5e+02 Score=26.92 Aligned_cols=70 Identities=16% Similarity=0.187 Sum_probs=31.4
Q ss_pred HHHHHHHHcCCCCCcch--HHHHHHHHHhcCChhHHHHHhhhCCCCChH--HHHHHHHHHhcCCChHHHHHHHh
Q 003868 36 SVHAHMISSGFKPREHI--INRLIDIYCKSLKLVYARTLFDEIPQPDIV--ARTTLIAAYSASDNVKLAREMFN 105 (790)
Q Consensus 36 ~~~~~~~~~g~~~~~~~--~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~ 105 (790)
++...+.+.|..|+... ..+.|...++.|+.+-+.-+++.-..|+.. ...+.+...++.|+.+.+..+++
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 44455556666554422 233344445556665555554443322211 01122333444555555555554
No 435
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=32.04 E-value=7.2e+02 Score=27.31 Aligned_cols=90 Identities=14% Similarity=0.139 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 003868 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464 (790)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 464 (790)
..-+++..|.++-...-...+-.+|..-| -+...|..++..|... .-+.-..+++++++..+. |+.....|++.|.
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH
Confidence 34455555555555555666666666533 3455566666666555 334455556655555432 3444455555555
Q ss_pred hcCCHHHHHHHHhcC
Q 003868 465 RCGVVEAANCVFNTM 479 (790)
Q Consensus 465 ~~g~~~~A~~~~~~~ 479 (790)
+ ++.+.+...|..+
T Consensus 144 k-ik~sk~a~~f~Ka 157 (711)
T COG1747 144 K-IKKSKAAEFFGKA 157 (711)
T ss_pred H-hchhhHHHHHHHH
Confidence 5 5555555555543
No 436
>PRK13342 recombination factor protein RarA; Reviewed
Probab=31.98 E-value=6.8e+02 Score=26.98 Aligned_cols=101 Identities=19% Similarity=0.110 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCHhHHHHHH
Q 003868 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM---PNVDSVSWNAMI 491 (790)
Q Consensus 415 ~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li 491 (790)
..+......++..+ .|+...+..+++.+...+-..+. +...+++... ..++......++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~----------------~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITL----------------ELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCH----------------HHHHHHHhhhhhccCCCccHHHHHH
Confidence 44444444444433 67888888777776543211111 1222222211 112223344455
Q ss_pred HHHHh---cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC
Q 003868 492 AALGQ---HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533 (790)
Q Consensus 492 ~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 533 (790)
+++.+ .++.+.|+..+.+|.+.|..|..+.-..+..++...|
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 55555 4789999999999999998888766665555555444
No 437
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=31.76 E-value=81 Score=31.72 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 526 (790)
-|+..|..-.+.|+.++|+.++++..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46788999999999999999999999988776666665544
No 438
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=31.62 E-value=5.6e+02 Score=26.28 Aligned_cols=10 Identities=50% Similarity=0.763 Sum_probs=7.5
Q ss_pred hHHHHHHHhh
Q 003868 723 SEKLAVAFGL 732 (790)
Q Consensus 723 ~~~~a~~~~~ 732 (790)
-+.||.+||.
T Consensus 320 l~~MA~aFgV 329 (393)
T KOG0687|consen 320 LESMAKAFGV 329 (393)
T ss_pred HHHHHHHhCc
Confidence 3678888884
No 439
>PF15469 Sec5: Exocyst complex component Sec5
Probab=31.38 E-value=3.7e+02 Score=24.92 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=14.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHccc
Q 003868 524 TVLSACNHAGLVKEGRRYFETMHG 547 (790)
Q Consensus 524 ~ll~a~~~~g~~~~a~~~~~~~~~ 547 (790)
.-|.-|...|+++.+...|..+..
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH
Confidence 345556666777766666665543
No 440
>PHA02875 ankyrin repeat protein; Provisional
Probab=31.07 E-value=6.8e+02 Score=26.76 Aligned_cols=44 Identities=16% Similarity=0.058 Sum_probs=18.8
Q ss_pred hcCChhHHHHHhhhCCCCChHH--HHHHHHHHhcCCChHHHHHHHh
Q 003868 62 KSLKLVYARTLFDEIPQPDIVA--RTTLIAAYSASDNVKLAREMFN 105 (790)
Q Consensus 62 ~~~~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~ 105 (790)
+.|+.+.+..+++.-..++... ..+.+...++.|+.+-+.-+++
T Consensus 11 ~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 56 (413)
T PHA02875 11 LFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMK 56 (413)
T ss_pred HhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 4455555555554433322211 2233334444555554444443
No 441
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=30.82 E-value=1.7e+02 Score=20.14 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=17.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003868 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425 (790)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 425 (790)
+.|-.+++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444556666666666666555555554444
No 442
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=29.88 E-value=6.4e+02 Score=26.70 Aligned_cols=125 Identities=16% Similarity=-0.022 Sum_probs=0.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHh------cCChHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 003868 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR------AGKFSEAKDVIDSLPFKPSAPIWEALLAG- 596 (790)
Q Consensus 524 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~------~g~~~~A~~~~~~~~~~p~~~~~~~ll~~- 596 (790)
..+....+.+++..|.++|+.+... ..+|....+-..+..+++ .-++++|.+.++.+....+...|..+...
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r-~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~~~ 213 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRR-LLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHDEL 213 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-ccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhhHH
Q ss_pred --HHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhc------CChhHHHHHHHHHHh
Q 003868 597 --CRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL------GRWDDAARVRKLMRD 649 (790)
Q Consensus 597 --~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------g~~~~a~~~~~~m~~ 649 (790)
..+....-++.....++.........++..+.+++..+ |++++|.-.+-+..+
T Consensus 214 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e 274 (380)
T TIGR02710 214 EDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALE 274 (380)
T ss_pred HHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
No 443
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=29.76 E-value=5e+02 Score=25.88 Aligned_cols=59 Identities=22% Similarity=0.210 Sum_probs=51.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 591 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
..+=+++...++++.|....++.+.++|.++.-..--+-+|.+.|...-|.+-++...+
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 34445677889999999999999999999998888899999999999999998887655
No 444
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.67 E-value=7.1e+02 Score=26.48 Aligned_cols=58 Identities=12% Similarity=0.191 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHCCCHHHHHHHHhhCCC------CChhHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 003868 322 PVNNALVTLYWKCGKVNEARDIFNQMPE------RDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379 (790)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 379 (790)
..+.-+.+-|..||+++.|.+.+.+..+ ..+-.|-.+|..-.-.|+|.+......+..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 3456677889999999999999988653 123356666666677777776666555544
No 445
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=29.13 E-value=70 Score=31.96 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=28.8
Q ss_pred hcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcc
Q 003868 567 RAGKFSEAKDVIDSL-PFKPS-APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623 (790)
Q Consensus 567 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 623 (790)
+.|+.++|..+|+.. .+.|+ +.+..-+....-.++++-+|.+.|-+++...|.|..+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 455566666665542 33332 2233333333344455566666666666666665443
No 446
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=29.00 E-value=97 Score=31.19 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003868 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421 (790)
Q Consensus 386 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 421 (790)
||.-|..-.+.||+++|+.++++.++.|+.--..||
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 455666666666677777777777777765444443
No 447
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=28.99 E-value=6.2e+02 Score=25.59 Aligned_cols=41 Identities=17% Similarity=0.057 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 003868 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441 (790)
Q Consensus 399 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~ 441 (790)
..+|+++|.-+....-+ .++-.-++..+-...+...|...+
T Consensus 149 s~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~l 189 (361)
T COG3947 149 SRKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLL 189 (361)
T ss_pred hhHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHH
Confidence 46778888777664322 233344555555555555554433
No 448
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=28.95 E-value=8.9e+02 Score=27.43 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003868 354 SWNAILSAYVSAGLIDEAKSLFEAMRERN-LLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412 (790)
Q Consensus 354 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 412 (790)
.++.++..+ +.=+.+.-.++++++.. . ...|..++++....|- ..|+.++.+....
T Consensus 312 ~f~~lv~~l-R~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT-~~a~~~i~~~i~~ 368 (574)
T smart00638 312 KFLRLVRLL-RTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGT-PPALKFIKQWIKN 368 (574)
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHc
Confidence 344444332 23334555555555544 3 4556666666666664 3334443333333
No 449
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=28.93 E-value=87 Score=25.19 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=20.9
Q ss_pred cCCChHHHHHHHhhCCCCCCCcchHHHHHHHHHhCC
Q 003868 93 ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128 (790)
Q Consensus 93 ~~g~~~~A~~~~~~~~~~~~~~~~~n~li~~~~~~g 128 (790)
...+.+.+.++++.++. ++...|..+..++-..+
T Consensus 46 ~~t~~~k~~~Lld~L~~--RG~~AF~~F~~aL~~~~ 79 (90)
T cd08332 46 KPTSFSQNVALLNLLPK--RGPRAFSAFCEALRETS 79 (90)
T ss_pred CCCcHHHHHHHHHHHHH--hChhHHHHHHHHHHhcC
Confidence 33455666666666666 66666666666665444
No 450
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=28.60 E-value=25 Score=19.00 Aligned_cols=11 Identities=18% Similarity=0.486 Sum_probs=7.7
Q ss_pred CcchhhHhhhh
Q 003868 752 DCHNAFKFMSK 762 (790)
Q Consensus 752 ~~~~~~~~~s~ 762 (790)
..|+++|+||.
T Consensus 11 glhe~ikli~n 21 (23)
T PF08225_consen 11 GLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHhc
Confidence 46778887764
No 451
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=28.51 E-value=4.1e+02 Score=29.96 Aligned_cols=43 Identities=12% Similarity=0.167 Sum_probs=26.5
Q ss_pred HHHHHHHHCCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHHcCCH
Q 003868 326 ALVTLYWKCGKVNEARDIFNQMPER------DLVSWNAILSAYVSAGLI 368 (790)
Q Consensus 326 ~li~~~~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~ 368 (790)
+|..++...|++..+.++++..... =...+|..|+...++|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 6667777777777777666665431 123566666666666654
No 452
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=28.10 E-value=2.2e+02 Score=22.69 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=20.3
Q ss_pred HcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 003868 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNG 397 (790)
Q Consensus 364 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 397 (790)
+....++|..+++.+..++..+|..+.+++...|
T Consensus 40 ~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~ 73 (86)
T cd08323 40 KATQKEKAVMLINMILTKDNHAYVSFYNALLHEG 73 (86)
T ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4445566666666666666666666666555444
No 453
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=27.93 E-value=91 Score=22.97 Aligned_cols=26 Identities=27% Similarity=0.183 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 003868 487 WNAMIAALGQHGNGARAIELYEQMLK 512 (790)
Q Consensus 487 ~~~li~~~~~~g~~~~A~~~~~~m~~ 512 (790)
--.+|.+|.+.|++++|.++.+++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34567888888888888888887765
No 454
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=27.55 E-value=57 Score=25.28 Aligned_cols=27 Identities=22% Similarity=0.472 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHcCcccCCccc
Q 003868 680 AQAVYKYLEQLVLEMRKLGYVPDTKFV 706 (790)
Q Consensus 680 ~~~~~~~l~~l~~~m~~~g~~pd~~~~ 706 (790)
..++...+++..++++..|+.||...+
T Consensus 7 li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 456778899999999999999997665
No 455
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=27.52 E-value=2.8e+02 Score=23.72 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=12.5
Q ss_pred hHHHHHhcCChhHHHHHHHHH
Q 003868 627 LSNMYANLGRWDDAARVRKLM 647 (790)
Q Consensus 627 l~~~~~~~g~~~~a~~~~~~m 647 (790)
-+.++...|+.++|...|+..
T Consensus 106 ra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 106 RAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhcCChHHHHHHHHHH
Confidence 344556677777777766643
No 456
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=27.21 E-value=7.1e+02 Score=25.71 Aligned_cols=118 Identities=11% Similarity=0.062 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc------cCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHH
Q 003868 500 GARAIELYEQMLKEGILPDRITFLTVLSACNH------AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE 573 (790)
Q Consensus 500 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 573 (790)
.++++.++++....+. |-.......|.+|-. .-+|..-..+|+.+.. +.|++.+--.-.-++++.--.+.
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAVAla~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAVALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHHHHHHhhhHHh
Confidence 5678888888877764 888877777776632 2356666677776653 34554322222223444444556
Q ss_pred HHHHHHhCCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 003868 574 AKDVIDSLPFKPS----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 574 A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
++..++.+...|. ...|..=...+.+.|+.++|...|++++.+.++..
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 6666666543321 22344445567788888888888888888876653
No 457
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=27.14 E-value=2.9e+02 Score=23.89 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhc--CCCCCcchHhhHHHHHhcCChhHHHHHHHH
Q 003868 605 LGIQAAEQLFQL--MPHHAGTYVLLSNMYANLGRWDDAARVRKL 646 (790)
Q Consensus 605 ~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 646 (790)
.+..+|+.+... .-.-+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 566677766653 444566777778888888888888887764
No 458
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=26.26 E-value=4.3e+02 Score=26.81 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=15.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 003868 387 TVMISGLAQNGYGEEGLKLFSQMRL 411 (790)
Q Consensus 387 ~~li~~~~~~g~~~~A~~~~~~m~~ 411 (790)
...+..+...|++..|+++..+..+
T Consensus 131 ~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 131 QSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445555566667777776665554
No 459
>PRK14700 recombination factor protein RarA; Provisional
Probab=26.11 E-value=6.3e+02 Score=25.71 Aligned_cols=45 Identities=16% Similarity=0.136 Sum_probs=33.8
Q ss_pred HHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 003868 389 MISGLAQ---NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433 (790)
Q Consensus 389 li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 433 (790)
+|++|.+ -.+.+.|+-.+.+|++.|..|....-..++.+.-..|.
T Consensus 129 ~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGl 176 (300)
T PRK14700 129 QLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGN 176 (300)
T ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3444443 45689999999999999988888777777777766664
No 460
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=26.11 E-value=4.3e+02 Score=22.81 Aligned_cols=43 Identities=12% Similarity=0.177 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHH
Q 003868 502 RAIELYEQMLKEGILPDRI-TFLTVLSACNHAGLVKEGRRYFET 544 (790)
Q Consensus 502 ~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 544 (790)
.+.++|+.|...|+--... -|..-...+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6677777777666554443 344444455566666666666653
No 461
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=25.99 E-value=1.2e+03 Score=28.48 Aligned_cols=23 Identities=26% Similarity=0.132 Sum_probs=14.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhc
Q 003868 357 AILSAYVSAGLIDEAKSLFEAMR 379 (790)
Q Consensus 357 ~li~~~~~~g~~~~A~~~~~~m~ 379 (790)
..|..+...+++.+|..+.++-+
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhR 721 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHR 721 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhc
Confidence 34455666777777777665544
No 462
>PRK02287 hypothetical protein; Provisional
Probab=25.82 E-value=4.6e+02 Score=24.10 Aligned_cols=60 Identities=8% Similarity=0.048 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH-HHHHHHHHhCCHHHHHHHHHHHH
Q 003868 555 EDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE-ALLAGCRIHGNIDLGIQAAEQLF 614 (790)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~ 614 (790)
..+..++..++.=.|..++|.++++.....++....| .++..|....+.++..++-++.+
T Consensus 107 Ls~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~ 167 (171)
T PRK02287 107 LSSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEYL 167 (171)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 4455566666667777777777776664333333222 45566665555555555444433
No 463
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=24.56 E-value=3.9e+02 Score=30.14 Aligned_cols=72 Identities=15% Similarity=0.133 Sum_probs=33.2
Q ss_pred HHHHHHhcCCChHHHHHHHhhCCCC----CCCcchHHHHHHHHHhCCCchH------HHHHHHHhhhCCCCCChhhHHHH
Q 003868 86 TLIAAYSASDNVKLAREMFNKTPLK----MRDTVFYNAMITAYSHNSNGHA------AIELFRDMRRDDVKPDNFTFTSV 155 (790)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~n~li~~~~~~g~~~~------A~~~~~~m~~~g~~p~~~t~~~l 155 (790)
+|+.+|..+|++-.+.++++..... +.=...||..|+-+.++|.++- |.+++++.+ +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 4555555555555555555443322 1223345555666666654421 222222222 44455666665
Q ss_pred HHHHh
Q 003868 156 LSALA 160 (790)
Q Consensus 156 l~~~~ 160 (790)
+.+..
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 55443
No 464
>PF15161 Neuropep_like: Neuropeptide-like
Probab=23.95 E-value=32 Score=24.15 Aligned_cols=18 Identities=39% Similarity=0.717 Sum_probs=12.8
Q ss_pred ecccccCCcchhhHhhhhh
Q 003868 745 KNLRICGDCHNAFKFMSKV 763 (790)
Q Consensus 745 ~nl~~c~~~~~~~~~~s~~ 763 (790)
-..|-|.|||.+. |+.+.
T Consensus 11 aesRPCVDCHAFe-fmqRA 28 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQRA 28 (65)
T ss_pred CCCCCchhhHHHH-HHHHH
Confidence 3468899999765 66543
No 465
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=23.61 E-value=2.8e+02 Score=25.73 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=13.8
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCC
Q 003868 595 AGCRIHGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 595 ~~~~~~g~~~~a~~~~~~~~~~~p~~ 620 (790)
..|.+.|.+++|.+++++.++ +|++
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~ 143 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPES 143 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCc
Confidence 345555666666666665555 4444
No 466
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=23.56 E-value=4.9e+02 Score=27.86 Aligned_cols=95 Identities=19% Similarity=0.230 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHH------------HHHHHHHHHHHh---CCHHHHHHHHHH------
Q 003868 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP------------IWEALLAGCRIH---GNIDLGIQAAEQ------ 612 (790)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~------------~~~~ll~~~~~~---g~~~~a~~~~~~------ 612 (790)
+......++..+....++.+-++..+....+.+.. -|-+++..++.| ||+..|+++++.
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Q ss_pred -HHhcCCC-CCcchHhhHHHHHhcCChhHHHHHHHHHH
Q 003868 613 -LFQLMPH-HAGTYVLLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 613 -~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
++...|. ...+|..++-+|.-.+|+.+|.+.|....
T Consensus 154 ~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 154 GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 467
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=23.17 E-value=1.1e+02 Score=32.61 Aligned_cols=85 Identities=24% Similarity=0.305 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHcCcccCCccccccCChhhhhhhhhhhhHHHHHHHhhcC----CCCCCeEE-EEecccccCCcchhhHh
Q 003868 685 KYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMK----LPGGATVR-VLKNLRICGDCHNAFKF 759 (790)
Q Consensus 685 ~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~h~~~~a~~~~~~~----~~~~~~~~-~~~nl~~c~~~~~~~~~ 759 (790)
...+++...+.+.|+.|-...+.-....+.....+..+-.+ ..+||+-. ..+..|+. ++|-..+.+ +.++|
T Consensus 276 ~~~~kvr~~ld~~G~~~~~Ii~Sdg~lde~~i~~l~~~g~~-~d~FGvGT~L~~~~~~~~~~~v~Klvev~g--~p~~K- 351 (405)
T COG1488 276 ELSEKVRAHLDKLGYDPVKIIVSDGLLDEKIIALLRAFGAR-NDAFGVGTNLTTAKPRPPLDIVYKLVEVNG--KPVAK- 351 (405)
T ss_pred HHHHHHHHHHHHcCCCceEEEEeCCcchHHHHHHHHHhCCC-ccEeccchhhccCCCCCcceeEEEEEEECC--cccee-
Confidence 34556777888899998333333123333333333332233 66777543 22333343 344444444 66676
Q ss_pred hhhhcCcEEEEecC
Q 003868 760 MSKVVGREIVVRDG 773 (790)
Q Consensus 760 ~s~~~~~~i~~~~~ 773 (790)
||+-+++..+-|..
T Consensus 352 is~~Pgkk~~~r~~ 365 (405)
T COG1488 352 ISKNPGKKQVYRSA 365 (405)
T ss_pred ecCCCccceeecch
Confidence 78889998887765
No 468
>PF13934 ELYS: Nuclear pore complex assembly
Probab=23.06 E-value=7e+02 Score=24.19 Aligned_cols=107 Identities=12% Similarity=0.104 Sum_probs=63.6
Q ss_pred CCCCChhhHHHHHHHH--HccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHH
Q 003868 514 GILPDRITFLTVLSAC--NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP-SAPIW 590 (790)
Q Consensus 514 g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~ 590 (790)
++.|.. ...+.++ ...+++++|.+++-.- .+.|+ .-..++..+.+.|+.+.|+.+++..+-.. +....
T Consensus 74 ~ip~~~---~~~~~g~W~LD~~~~~~A~~~L~~p----s~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~ 144 (226)
T PF13934_consen 74 GIPPKY---IKFIQGFWLLDHGDFEEALELLSHP----SLIPW--FPDKILQALLRRGDPKLALRYLRAVGPPLSSPEAL 144 (226)
T ss_pred CCCHHH---HHHHHHHHHhChHhHHHHHHHhCCC----CCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHH
Confidence 355543 3444444 3447888998887432 22233 22357888888999999999999985333 23333
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHH
Q 003868 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632 (790)
Q Consensus 591 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 632 (790)
..++.. ..++.+.+|....+..-+.. ....+..+...+.
T Consensus 145 ~~~~~~-La~~~v~EAf~~~R~~~~~~--~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 145 TLYFVA-LANGLVTEAFSFQRSYPDEL--RRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHH-HHcCCHHHHHHHHHhCchhh--hHHHHHHHHHHHH
Confidence 333444 66688888887776654421 1234444444444
No 469
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=22.98 E-value=3.5e+02 Score=29.54 Aligned_cols=60 Identities=13% Similarity=0.231 Sum_probs=35.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 003868 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616 (790)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 616 (790)
++..|-.++.-|...+++++|.++-+-.+ +...|.+|...-..+.+...++.+|..+.+.
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~i 631 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQI 631 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhch
Confidence 33445555666666677777766665543 4556666666666666665555555554443
No 470
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=22.91 E-value=58 Score=25.41 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=29.2
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 599 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
..|+.+.|+..|++.+..--.-..+-+. .....-.|++|.++.++|..
T Consensus 20 E~g~~e~Al~~Y~~gi~~l~eg~ai~~~---~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 20 EWGDKEQALAHYRKGLRELEEGIAVPVP---SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHcCCCCC---cccccHHHHHHHHHHHHHHH
Confidence 3477888888888776531110000000 23455679999999999974
No 471
>PHA02878 ankyrin repeat protein; Provisional
Probab=22.67 E-value=1e+03 Score=26.05 Aligned_cols=70 Identities=13% Similarity=0.171 Sum_probs=28.0
Q ss_pred HHHHHHHHcCCCCCcch--HHHHHHHHHhcCChhHHHHHhhhCCCCChHHHHHHHHHHhcCCChHHHHHHHh
Q 003868 36 SVHAHMISSGFKPREHI--INRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFN 105 (790)
Q Consensus 36 ~~~~~~~~~g~~~~~~~--~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 105 (790)
.+...+.+.|..++... -.+-|...+..|+.+....+++.....+...-...+...+..|+.+-+..++.
T Consensus 51 e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~ 122 (477)
T PHA02878 51 DVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILT 122 (477)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHh
Confidence 33444445554443211 11223333445555555555554333222111112223334455555544443
No 472
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=22.44 E-value=6e+02 Score=23.16 Aligned_cols=61 Identities=15% Similarity=0.126 Sum_probs=33.0
Q ss_pred CCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHH-HHHHHHHHHhCCHHHHHHH
Q 003868 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW-EALLAGCRIHGNIDLGIQA 609 (790)
Q Consensus 549 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~~ll~~~~~~g~~~~a~~~ 609 (790)
||.+--..+..+++.++.=.|..++|.+++.....-++..-. .-++..|.+..+-.+..++
T Consensus 109 YGkp~kLss~EAlaAaLYI~G~~deA~~lls~F~WG~~FleLN~e~Le~Y~~a~~s~eVvei 170 (179)
T COG2042 109 YGKPFKLSSAEALAAALYIVGFKDEASELLSKFKWGHTFLELNKELLEEYSNAEDSAEVVEI 170 (179)
T ss_pred cCCcchhchHHHHHHHHHHhCcHHHHHHHHhhCcccHHHHHHhHHHHHHHHhccchHHHHHH
Confidence 343444455566777777777777777777766433333222 2345555555444333333
No 473
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=22.42 E-value=32 Score=25.56 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=16.0
Q ss_pred EEEEecCCcccccCCCccCC
Q 003868 767 EIVVRDGKRFHHFRDGKCSC 786 (790)
Q Consensus 767 ~i~~~~~~~~h~~~~g~~sc 786 (790)
.|=+.|....|+|+||+-+-
T Consensus 9 si~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 9 SIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEBTTSEEEEEETTS-EEE
T ss_pred eEecCCCCEEEEEcCCceeh
Confidence 57788999999999998653
No 474
>PHA03100 ankyrin repeat protein; Provisional
Probab=22.27 E-value=1e+03 Score=25.93 Aligned_cols=40 Identities=10% Similarity=0.081 Sum_probs=17.7
Q ss_pred HHHHHHHHcCCCCCcchH--HHHHHH-----HHhcCChhHHHHHhhh
Q 003868 36 SVHAHMISSGFKPREHII--NRLIDI-----YCKSLKLVYARTLFDE 75 (790)
Q Consensus 36 ~~~~~~~~~g~~~~~~~~--~~ll~~-----~~~~~~~~~A~~~~~~ 75 (790)
++.+.+.+.|..|+.... ...+.. ....|+.+.+.-+++.
T Consensus 49 ~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ 95 (480)
T PHA03100 49 DVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY 95 (480)
T ss_pred HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHC
Confidence 344555555655543211 123333 3444555555444444
No 475
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=21.92 E-value=2e+02 Score=31.82 Aligned_cols=132 Identities=17% Similarity=0.040 Sum_probs=85.1
Q ss_pred CCChhhHHHHHHHHHcc--CCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhC-CCCCC--HHH
Q 003868 516 LPDRITFLTVLSACNHA--GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR-AGKFSEAKDVIDSL-PFKPS--API 589 (790)
Q Consensus 516 ~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~-~~~p~--~~~ 589 (790)
-|+..+.-.++.-...- ..-+-|-.++..|.. .+.|--...+ +...|.| .|+...|...+... ..+|. .+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 35555554444433221 223445556666654 3344322222 2333443 67888888877664 33332 223
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 590 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
...|.+...+.|-.-.|-.++.+.+.+....|-++..++++|....+.+.|.+-++...+.
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 4456666677777778888999999888888899999999999999999999999988653
No 476
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=21.62 E-value=7.6e+02 Score=27.42 Aligned_cols=57 Identities=16% Similarity=0.152 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCC--h---hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003868 355 WNAILSAYVSAGLIDEAKSLFEAMRERN--L---LSWTVMISGLAQNGYGEEGLKLFSQMRL 411 (790)
Q Consensus 355 ~~~li~~~~~~g~~~~A~~~~~~m~~~~--~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (790)
...++.-|.+.+++++|..++..|.-.. . .+.+.+.+.+.+..--++....++.+..
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 3445666777777777777776665331 1 2344445555555444555555555543
No 477
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=21.38 E-value=7.5e+02 Score=23.91 Aligned_cols=126 Identities=21% Similarity=0.183 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccC-CCCCCChhHHHHHHHH
Q 003868 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGP-YGIPPGEDHYARFIDL 564 (790)
Q Consensus 487 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~~~~li~~ 564 (790)
.+.-++.+.+.+...+|+.+.++-++. +|.. -+-..++..++-.|++++|..-++-..+- -...+...+|..+|..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345567778888899999988887774 5654 45666778888999999998776655421 1233445667666653
Q ss_pred HHhcCChHHHH-HHHHhC--C-CCC-CHHHHHHHH-HHHHHh--CCHHHHHHHHHHHHhcCCCCC
Q 003868 565 LCRAGKFSEAK-DVIDSL--P-FKP-SAPIWEALL-AGCRIH--GNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 565 ~~~~g~~~~A~-~~~~~~--~-~~p-~~~~~~~ll-~~~~~~--g~~~~a~~~~~~~~~~~p~~~ 621 (790)
- .+. ++|..- | +-- ....|-..+ .+..-+ |..+.+..+-+.+++..|...
T Consensus 82 e-------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 82 E-------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred H-------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 2 222 334322 1 111 234555443 443322 445556666677777766644
No 478
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=20.90 E-value=1.4e+03 Score=26.87 Aligned_cols=107 Identities=15% Similarity=0.050 Sum_probs=59.3
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC--CchhHHHHHHHHHHhcCCHHHHHHHHhc-------CCCCC
Q 003868 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD--SSLSAGNALITMYARCGVVEAANCVFNT-------MPNVD 483 (790)
Q Consensus 413 g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~--~~~~~~~~li~~y~~~g~~~~A~~~~~~-------~~~~~ 483 (790)
++..+......+...+ .|+..++..+++.+...... .+... =..+.+.+.+.. -....
T Consensus 192 ~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~-----------It~~~~~e~l~~~~~~ydk~gd~h 258 (725)
T PRK13341 192 KVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLID-----------ITLAIAEESIQQRAVLYDKEGDAH 258 (725)
T ss_pred ccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCcee-----------ccHHHHHHHHHHhhhhcccCCCCC
Confidence 3555555665555543 78888888888876542110 00000 011222222222 11122
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC
Q 003868 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533 (790)
Q Consensus 484 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 533 (790)
.....+++... +.++++.|+..+.+|.+.|..|..+.-..++.+....|
T Consensus 259 yd~Isa~~ksi-rgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdig 307 (725)
T PRK13341 259 FDTISAFIKSL-RGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVG 307 (725)
T ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 23333334332 35789999999999999999888776666665554544
No 479
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=20.07 E-value=6.8e+02 Score=23.59 Aligned_cols=104 Identities=15% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-----CCCCCHHHHHHHHH-HHHHhC--CHHHHH
Q 003868 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-----PFKPSAPIWEALLA-GCRIHG--NIDLGI 607 (790)
Q Consensus 536 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~ll~-~~~~~g--~~~~a~ 607 (790)
+++.++-+++.. ++...-.....|++++|.+.++++ .++.-...|..+.. +++.++ .+-+|.
T Consensus 20 EE~l~lsRei~r----------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~ 89 (204)
T COG2178 20 EEALKLSREIVR----------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEAT 89 (204)
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHH
Q ss_pred HHHHHHHhcCCCCCc----chHhhHHHHHhc--------------CChhHHHHHHHHHHh
Q 003868 608 QAAEQLFQLMPHHAG----TYVLLSNMYANL--------------GRWDDAARVRKLMRD 649 (790)
Q Consensus 608 ~~~~~~~~~~p~~~~----~~~~l~~~~~~~--------------g~~~~a~~~~~~m~~ 649 (790)
.++.-+.+-.-+++. .+...+.+.+.. |+++.|.++++-|.+
T Consensus 90 ~l~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 90 LLYSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
No 480
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=20.00 E-value=1.9e+02 Score=28.50 Aligned_cols=8 Identities=13% Similarity=0.098 Sum_probs=3.1
Q ss_pred HhCCHHHH
Q 003868 599 IHGNIDLG 606 (790)
Q Consensus 599 ~~g~~~~a 606 (790)
..|+.+..
T Consensus 230 ~~~~~~~~ 237 (247)
T PF11817_consen 230 RLGDVEDY 237 (247)
T ss_pred HhCCHHHH
Confidence 33444333
No 481
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=20.00 E-value=8.3e+02 Score=23.88 Aligned_cols=57 Identities=5% Similarity=-0.034 Sum_probs=30.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCChHHHHHHHHHHH
Q 003868 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG-LGALENGRQLHAQLV 445 (790)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~a~~i~~~~~ 445 (790)
++...-+.|+++++...++++...+...+..--+.+-.+|-. .|....+..++..+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 455566677788888888877777665555544444444422 233344444444443
Done!