Query 003868
Match_columns 790
No_of_seqs 758 out of 4938
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 06:40:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003868.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003868hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.8E-40 1.3E-44 376.7 33.1 493 62-632 65-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.7E-38 6E-43 362.9 35.7 495 90-650 62-579 (597)
3 4g26_A Pentatricopeptide repea 100.0 3.8E-27 1.3E-31 257.7 22.4 184 384-568 27-223 (501)
4 1w3b_A UDP-N-acetylglucosamine 99.9 2.6E-24 8.9E-29 231.1 38.1 371 231-636 5-388 (388)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1.2E-23 3.9E-28 226.1 38.9 349 289-649 6-367 (388)
6 4g26_A Pentatricopeptide repea 99.9 1.9E-25 6.6E-30 244.2 20.9 200 400-600 7-223 (501)
7 2y4t_A DNAJ homolog subfamily 99.9 5.2E-21 1.8E-25 209.7 31.6 322 318-647 23-406 (450)
8 2gw1_A Mitochondrial precursor 99.9 4.8E-21 1.6E-25 213.9 31.0 390 226-650 7-478 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 1.1E-19 3.7E-24 199.2 32.4 349 280-639 24-443 (450)
10 2gw1_A Mitochondrial precursor 99.9 5.6E-20 1.9E-24 205.2 30.5 396 189-627 10-489 (514)
11 3fp2_A TPR repeat-containing p 99.9 2.6E-19 9.1E-24 201.0 32.8 389 225-650 25-491 (537)
12 3fp2_A TPR repeat-containing p 99.8 6E-19 2.1E-23 198.0 29.0 294 327-625 166-500 (537)
13 1xi4_A Clathrin heavy chain; a 99.8 1E-15 3.4E-20 176.5 48.1 392 171-643 969-1377(1630)
14 3ieg_A DNAJ homolog subfamily 99.8 4.6E-17 1.6E-21 171.9 33.6 300 321-649 3-334 (359)
15 3ieg_A DNAJ homolog subfamily 99.8 3.5E-17 1.2E-21 172.9 30.7 321 281-634 2-353 (359)
16 1xi4_A Clathrin heavy chain; a 99.8 1.4E-13 4.9E-18 158.9 55.0 562 31-645 660-1340(1630)
17 1b89_A Protein (clathrin heavy 99.7 1E-16 3.5E-21 166.7 23.0 283 208-581 17-308 (449)
18 1fch_A Peroxisomal targeting s 99.7 5.7E-17 2E-21 172.2 21.5 293 332-646 36-355 (368)
19 3hym_B Cell division cycle pro 99.7 3.5E-16 1.2E-20 163.1 26.7 283 320-637 21-321 (330)
20 3hym_B Cell division cycle pro 99.7 5.5E-16 1.9E-20 161.6 27.6 262 382-649 21-298 (330)
21 1b89_A Protein (clathrin heavy 99.7 9.7E-18 3.3E-22 174.3 11.0 282 332-643 14-304 (449)
22 2xm6_A Protein corresponding t 99.7 3.7E-14 1.3E-18 156.8 39.2 366 223-633 37-452 (490)
23 2xm6_A Protein corresponding t 99.7 8.4E-14 2.9E-18 153.9 39.8 350 281-652 38-434 (490)
24 4eqf_A PEX5-related protein; a 99.7 2.6E-16 8.8E-21 167.1 18.7 267 353-646 66-352 (365)
25 3mkr_A Coatomer subunit epsilo 99.7 1.3E-14 4.4E-19 147.9 29.9 270 361-644 8-288 (291)
26 2ooe_A Cleavage stimulation fa 99.7 6.3E-14 2.1E-18 156.6 38.2 389 224-649 12-491 (530)
27 2ooe_A Cleavage stimulation fa 99.7 6.8E-14 2.3E-18 156.4 35.8 396 183-620 11-496 (530)
28 4g1t_A Interferon-induced prot 99.7 1.4E-14 4.9E-19 159.4 27.4 363 282-660 51-469 (472)
29 1fch_A Peroxisomal targeting s 99.7 2.1E-15 7.2E-20 160.1 19.9 248 364-649 37-313 (368)
30 3cv0_A Peroxisome targeting si 99.7 4.1E-15 1.4E-19 154.7 20.5 274 351-647 20-312 (327)
31 4eqf_A PEX5-related protein; a 99.6 6.2E-15 2.1E-19 156.3 20.9 221 426-649 73-309 (365)
32 3mkr_A Coatomer subunit epsilo 99.6 1.6E-14 5.4E-19 147.2 22.8 245 390-649 6-263 (291)
33 3spa_A Mtrpol, DNA-directed RN 99.6 3.4E-16 1.1E-20 175.1 9.1 151 384-569 128-286 (1134)
34 3spa_A Mtrpol, DNA-directed RN 99.6 3.3E-16 1.1E-20 175.2 7.5 132 449-581 123-262 (1134)
35 3cv0_A Peroxisome targeting si 99.6 1.5E-14 5.1E-19 150.5 17.7 259 320-616 20-315 (327)
36 3uq3_A Heat shock protein STI1 99.6 1.6E-13 5.6E-18 137.1 21.1 226 384-649 6-235 (258)
37 2pl2_A Hypothetical conserved 99.5 1.2E-13 4E-18 134.3 17.7 195 450-648 2-212 (217)
38 4g1t_A Interferon-induced prot 99.5 1.9E-12 6.6E-17 142.3 29.6 374 224-628 50-471 (472)
39 3uq3_A Heat shock protein STI1 99.5 2.5E-13 8.7E-18 135.7 18.1 233 352-628 5-254 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.9E-13 2E-17 134.5 19.8 240 396-644 18-269 (275)
41 3u4t_A TPR repeat-containing p 99.5 6.2E-13 2.1E-17 134.2 18.2 244 354-635 5-269 (272)
42 3e4b_A ALGK; tetratricopeptide 99.4 6.8E-12 2.3E-16 136.5 23.0 344 288-653 9-390 (452)
43 1ouv_A Conserved hypothetical 99.4 2.7E-11 9.3E-16 122.3 24.9 225 382-652 5-253 (273)
44 2ho1_A Type 4 fimbrial biogene 99.4 9.7E-12 3.3E-16 123.8 20.7 194 454-650 38-238 (252)
45 2ho1_A Type 4 fimbrial biogene 99.4 2.1E-11 7.1E-16 121.4 22.7 208 383-625 37-247 (252)
46 2vq2_A PILW, putative fimbrial 99.4 1.4E-11 4.8E-16 119.9 20.8 195 452-649 7-210 (225)
47 2h6f_A Protein farnesyltransfe 99.4 6.9E-12 2.4E-16 132.1 19.7 237 392-634 106-366 (382)
48 1ouv_A Conserved hypothetical 99.4 3.2E-11 1.1E-15 121.7 23.5 231 350-620 4-255 (273)
49 3e4b_A ALGK; tetratricopeptide 99.4 4.5E-12 1.5E-16 137.9 18.2 310 327-652 9-353 (452)
50 2q7f_A YRRB protein; TPR, prot 99.4 3.3E-12 1.1E-16 126.3 15.8 145 483-630 90-236 (243)
51 2q7f_A YRRB protein; TPR, prot 99.4 3.8E-12 1.3E-16 125.8 16.0 195 452-650 22-222 (243)
52 2vq2_A PILW, putative fimbrial 99.4 3.1E-11 1.1E-15 117.5 21.3 210 383-627 8-222 (225)
53 2pl2_A Hypothetical conserved 99.4 1.5E-11 5E-16 119.4 18.8 189 386-580 8-210 (217)
54 3vtx_A MAMA; tetratricopeptide 99.4 1.9E-11 6.3E-16 115.2 18.5 164 483-650 4-170 (184)
55 4a1s_A PINS, partner of inscut 99.4 4.6E-12 1.6E-16 136.4 15.7 270 354-649 50-371 (411)
56 3u4t_A TPR repeat-containing p 99.4 3.9E-11 1.3E-15 120.9 21.5 218 427-649 12-249 (272)
57 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.9E-11 6.6E-16 123.3 19.2 236 366-610 19-269 (275)
58 3sf4_A G-protein-signaling mod 99.4 1.2E-11 4.3E-16 132.6 18.5 195 455-649 89-335 (406)
59 3ro2_A PINS homolog, G-protein 99.4 1.5E-11 5.3E-16 127.8 18.0 229 421-649 46-331 (338)
60 2h6f_A Protein farnesyltransfe 99.3 1.1E-11 3.7E-16 130.6 16.6 225 419-649 98-347 (382)
61 3sf4_A G-protein-signaling mod 99.3 5.8E-12 2E-16 135.2 14.5 293 319-639 7-365 (406)
62 4abn_A Tetratricopeptide repea 99.3 6.2E-12 2.1E-16 137.7 14.2 192 452-647 101-318 (474)
63 4a1s_A PINS, partner of inscut 99.3 2.1E-11 7E-16 131.3 15.9 271 321-619 48-375 (411)
64 2ond_A Cleavage stimulation fa 99.3 7.9E-10 2.7E-14 113.6 25.2 219 400-623 33-277 (308)
65 4e6h_A MRNA 3'-END-processing 99.3 5.3E-09 1.8E-13 117.6 33.3 399 183-621 64-575 (679)
66 3ro2_A PINS homolog, G-protein 99.3 7.1E-11 2.4E-15 122.7 16.3 265 324-619 8-335 (338)
67 3ulq_A Response regulator aspa 99.3 7.9E-11 2.7E-15 125.4 17.0 162 486-648 186-366 (383)
68 4gyw_A UDP-N-acetylglucosamine 99.3 6.7E-11 2.3E-15 134.7 17.1 163 483-649 8-173 (723)
69 3vtx_A MAMA; tetratricopeptide 99.2 1E-10 3.4E-15 110.1 14.7 166 452-621 4-175 (184)
70 2ond_A Cleavage stimulation fa 99.2 8.4E-10 2.9E-14 113.5 21.1 211 435-650 33-270 (308)
71 3nf1_A KLC 1, kinesin light ch 99.2 5E-11 1.7E-15 122.6 11.1 172 352-547 27-223 (311)
72 3nf1_A KLC 1, kinesin light ch 99.2 2.2E-11 7.4E-16 125.3 7.9 242 384-649 28-306 (311)
73 3as5_A MAMA; tetratricopeptide 99.2 4.5E-10 1.5E-14 105.3 16.4 159 455-649 10-172 (186)
74 3ulq_A Response regulator aspa 99.2 3.3E-10 1.1E-14 120.6 17.1 230 389-618 109-370 (383)
75 4e6h_A MRNA 3'-END-processing 99.2 4.4E-08 1.5E-12 110.1 34.3 92 37-129 54-154 (679)
76 3as5_A MAMA; tetratricopeptide 99.2 2E-09 7E-14 100.7 19.5 171 418-624 8-181 (186)
77 3q15_A PSP28, response regulat 99.1 3.2E-09 1.1E-13 112.7 22.8 228 387-614 105-363 (378)
78 1hz4_A MALT regulatory protein 99.1 1.2E-08 4.2E-13 107.9 27.1 193 457-649 97-321 (373)
79 4i17_A Hypothetical protein; T 99.1 2.4E-09 8.3E-14 104.5 17.8 204 416-631 5-224 (228)
80 4abn_A Tetratricopeptide repea 99.1 8.5E-10 2.9E-14 120.7 15.1 176 469-649 84-286 (474)
81 4i17_A Hypothetical protein; T 99.1 2.2E-09 7.4E-14 104.9 16.3 185 454-649 8-208 (228)
82 3q15_A PSP28, response regulat 99.1 2.6E-09 9E-14 113.4 17.2 225 424-649 107-364 (378)
83 1hz4_A MALT regulatory protein 99.0 1E-07 3.4E-12 100.8 28.6 259 357-649 58-348 (373)
84 4gyw_A UDP-N-acetylglucosamine 98.9 3.1E-09 1.1E-13 121.0 12.5 163 452-618 8-176 (723)
85 3edt_B KLC 2, kinesin light ch 98.9 2E-08 6.8E-13 101.2 16.9 127 420-546 45-196 (283)
86 3qky_A Outer membrane assembly 98.9 5.3E-08 1.8E-12 97.2 19.6 203 452-696 14-247 (261)
87 3edt_B KLC 2, kinesin light ch 98.9 6.9E-09 2.4E-13 104.6 12.9 221 429-649 12-280 (283)
88 1qqe_A Vesicular transport pro 98.9 1.3E-08 4.3E-13 103.7 14.7 68 368-446 33-105 (292)
89 2yhc_A BAMD, UPF0169 lipoprote 98.8 1E-07 3.5E-12 92.6 17.7 182 453-653 4-216 (225)
90 2fo7_A Synthetic consensus TPR 98.8 4.1E-08 1.4E-12 86.0 13.6 129 486-649 3-131 (136)
91 4ga2_A E3 SUMO-protein ligase 98.8 2.8E-09 9.5E-14 96.2 5.9 140 493-636 6-149 (150)
92 3mv2_B Coatomer subunit epsilo 98.8 1.5E-07 5E-12 93.9 18.5 178 437-622 85-288 (310)
93 3qky_A Outer membrane assembly 98.8 5.3E-08 1.8E-12 97.1 15.4 203 416-639 13-250 (261)
94 3qou_A Protein YBBN; thioredox 98.8 7.7E-08 2.6E-12 97.4 16.7 172 472-648 105-282 (287)
95 3mv2_B Coatomer subunit epsilo 98.8 2.8E-07 9.6E-12 91.8 19.9 174 472-650 85-282 (310)
96 1qqe_A Vesicular transport pro 98.8 4.9E-07 1.7E-11 91.8 22.3 202 336-581 32-266 (292)
97 2fo7_A Synthetic consensus TPR 98.8 1.1E-07 3.9E-12 83.1 15.4 122 455-579 3-127 (136)
98 4ga2_A E3 SUMO-protein ligase 98.7 2.2E-08 7.7E-13 90.2 8.8 122 525-649 3-128 (150)
99 2pzi_A Probable serine/threoni 98.7 2.2E-08 7.5E-13 114.6 10.3 168 464-636 402-583 (681)
100 2r5s_A Uncharacterized protein 98.7 1.4E-07 4.9E-12 87.5 13.2 156 489-649 11-172 (176)
101 3rjv_A Putative SEL1 repeat pr 98.7 3.5E-07 1.2E-11 87.8 16.3 161 483-652 17-199 (212)
102 2uy1_A Cleavage stimulation fa 98.7 4.7E-06 1.6E-10 90.9 27.2 320 279-614 44-411 (493)
103 2vsy_A XCC0866; transferase, g 98.7 1.5E-07 5.1E-12 105.7 15.1 159 466-628 2-169 (568)
104 2ifu_A Gamma-SNAP; membrane fu 98.7 1.5E-07 5.1E-12 96.4 12.9 179 461-642 44-253 (307)
105 2vgx_A Chaperone SYCD; alterna 98.6 1.2E-07 4.2E-12 85.0 10.0 96 554-649 20-117 (148)
106 2vsy_A XCC0866; transferase, g 98.6 3.9E-07 1.3E-11 102.3 16.3 145 432-581 3-154 (568)
107 3gyz_A Chaperone protein IPGC; 98.6 2.3E-07 8E-12 83.2 11.2 101 550-650 30-133 (151)
108 2pzi_A Probable serine/threoni 98.6 4.5E-07 1.6E-11 103.7 16.5 189 429-622 402-608 (681)
109 3urz_A Uncharacterized protein 98.6 3.3E-07 1.1E-11 87.8 12.9 128 488-620 58-190 (208)
110 2yhc_A BAMD, UPF0169 lipoprote 98.6 1.1E-06 3.9E-11 85.1 16.0 186 418-623 4-220 (225)
111 3u3w_A Transcriptional activat 98.5 5.6E-06 1.9E-10 83.9 21.1 161 489-649 80-265 (293)
112 4gco_A Protein STI-1; structur 98.5 4.1E-07 1.4E-11 79.0 10.8 106 522-629 16-123 (126)
113 1hh8_A P67PHOX, NCF-2, neutrop 98.5 1.2E-06 4.2E-11 83.9 15.3 124 522-650 9-150 (213)
114 2r5s_A Uncharacterized protein 98.5 5.4E-07 1.9E-11 83.6 12.2 155 456-615 9-172 (176)
115 3urz_A Uncharacterized protein 98.5 5E-06 1.7E-10 79.4 19.3 127 389-519 60-190 (208)
116 2ifu_A Gamma-SNAP; membrane fu 98.5 1.7E-07 5.7E-12 96.0 8.9 196 431-648 4-222 (307)
117 2xcb_A PCRH, regulatory protei 98.5 7.8E-07 2.7E-11 79.1 12.0 96 554-649 17-114 (142)
118 2qfc_A PLCR protein; TPR, HTH, 98.5 1.9E-06 6.5E-11 87.5 16.2 164 486-649 77-265 (293)
119 4gco_A Protein STI-1; structur 98.5 8.7E-07 3E-11 76.9 11.3 99 551-649 8-109 (126)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.5 1.5E-06 5.1E-11 83.3 13.9 144 456-620 9-154 (213)
121 3qou_A Protein YBBN; thioredox 98.5 5E-06 1.7E-10 83.9 18.0 161 417-580 116-280 (287)
122 1a17_A Serine/threonine protei 98.5 1.7E-06 5.8E-11 78.9 13.1 126 522-649 16-145 (166)
123 2uy1_A Cleavage stimulation fa 98.4 2E-05 6.8E-10 85.9 22.8 172 470-647 196-380 (493)
124 2c2l_A CHIP, carboxy terminus 98.4 2.2E-07 7.7E-12 93.6 6.8 187 455-649 6-198 (281)
125 3rjv_A Putative SEL1 repeat pr 98.4 9.3E-06 3.2E-10 77.8 17.8 169 371-548 5-197 (212)
126 1na0_A Designed protein CTPR3; 98.4 2.3E-06 8E-11 73.4 12.4 113 521-635 11-125 (125)
127 3dra_A Protein farnesyltransfe 98.4 6.8E-05 2.3E-09 75.4 24.7 158 467-628 124-300 (306)
128 2vyi_A SGTA protein; chaperone 98.4 2.2E-06 7.6E-11 74.3 11.6 115 521-637 14-130 (131)
129 3dra_A Protein farnesyltransfe 98.4 1.7E-05 5.8E-10 79.9 19.2 191 455-649 69-286 (306)
130 2lni_A Stress-induced-phosphop 98.4 2.4E-06 8.1E-11 74.5 11.5 114 521-636 18-133 (133)
131 3u3w_A Transcriptional activat 98.4 3.2E-05 1.1E-09 78.2 21.3 203 405-616 33-266 (293)
132 4f3v_A ESX-1 secretion system 98.3 3.9E-06 1.3E-10 82.5 13.2 135 488-627 106-247 (282)
133 1p5q_A FKBP52, FK506-binding p 98.3 2.7E-06 9.2E-11 88.1 12.4 144 483-648 146-292 (336)
134 3upv_A Heat shock protein STI1 98.3 2.8E-06 9.5E-11 73.6 10.6 95 555-649 4-100 (126)
135 1wao_1 Serine/threonine protei 98.3 3.4E-06 1.2E-10 91.8 13.5 117 528-646 15-135 (477)
136 2e2e_A Formate-dependent nitri 98.3 3.1E-06 1E-10 78.4 11.3 118 531-650 22-144 (177)
137 4f3v_A ESX-1 secretion system 98.3 2.9E-06 9.8E-11 83.4 11.1 181 465-650 18-237 (282)
138 3gw4_A Uncharacterized protein 98.3 1.1E-05 3.8E-10 76.3 14.9 93 557-649 68-175 (203)
139 2kck_A TPR repeat; tetratricop 98.3 3.9E-06 1.3E-10 70.4 10.2 98 554-651 5-107 (112)
140 2fbn_A 70 kDa peptidylprolyl i 98.3 5.3E-07 1.8E-11 85.5 5.0 172 459-651 10-187 (198)
141 2vgx_A Chaperone SYCD; alterna 98.3 1.7E-06 5.7E-11 77.5 7.8 108 515-624 16-126 (148)
142 1hxi_A PEX5, peroxisome target 98.2 3.5E-06 1.2E-10 72.3 9.2 93 557-649 19-113 (121)
143 3gyz_A Chaperone protein IPGC; 98.2 5.6E-06 1.9E-10 74.1 10.7 105 515-621 31-138 (151)
144 3q49_B STIP1 homology and U bo 98.2 8E-06 2.7E-10 71.7 11.7 97 553-649 7-105 (137)
145 3sz7_A HSC70 cochaperone (SGT) 98.2 5.9E-06 2E-10 75.4 10.5 96 554-649 10-107 (164)
146 2qfc_A PLCR protein; TPR, HTH, 98.2 1.5E-05 5.1E-10 80.8 14.3 162 455-616 77-266 (293)
147 2e2e_A Formate-dependent nitri 98.2 8.9E-06 3E-10 75.2 11.1 126 495-624 21-152 (177)
148 1elw_A TPR1-domain of HOP; HOP 98.2 1.3E-05 4.5E-10 67.7 11.3 95 555-649 4-100 (118)
149 2lni_A Stress-induced-phosphop 98.2 1.1E-05 3.8E-10 70.1 10.9 98 552-649 13-112 (133)
150 4gcn_A Protein STI-1; structur 98.2 8.5E-06 2.9E-10 70.6 9.9 94 556-649 9-111 (127)
151 1na0_A Designed protein CTPR3; 98.2 1.4E-05 5E-10 68.3 11.3 96 555-650 9-106 (125)
152 1elw_A TPR1-domain of HOP; HOP 98.1 1.7E-05 5.8E-10 67.1 11.3 107 522-630 7-115 (118)
153 2dba_A Smooth muscle cell asso 98.1 2E-05 6.9E-10 70.0 12.2 96 554-649 27-127 (148)
154 1a17_A Serine/threonine protei 98.1 3.6E-05 1.2E-09 69.9 13.8 129 484-616 13-146 (166)
155 2xcb_A PCRH, regulatory protei 98.1 1.2E-05 4.1E-10 71.3 9.9 105 521-627 20-126 (142)
156 3gw4_A Uncharacterized protein 98.1 7.3E-05 2.5E-09 70.5 16.0 113 333-445 4-134 (203)
157 3sz7_A HSC70 cochaperone (SGT) 98.1 2.3E-05 7.9E-10 71.4 11.6 106 521-628 13-120 (164)
158 2hr2_A Hypothetical protein; a 98.1 1.1E-05 3.9E-10 71.4 8.9 90 560-649 16-130 (159)
159 3rkv_A Putative peptidylprolyl 98.1 2.5E-05 8.5E-10 71.0 11.7 63 587-649 63-125 (162)
160 2dba_A Smooth muscle cell asso 98.1 4E-05 1.4E-09 68.0 12.9 108 521-631 30-143 (148)
161 2c2l_A CHIP, carboxy terminus 98.1 2.5E-05 8.5E-10 78.5 12.5 187 420-616 6-199 (281)
162 3upv_A Heat shock protein STI1 98.1 2E-05 6.7E-10 68.1 10.3 108 522-631 7-122 (126)
163 2vyi_A SGTA protein; chaperone 98.1 2.5E-05 8.6E-10 67.4 10.9 97 554-650 11-109 (131)
164 1wao_1 Serine/threonine protei 98.0 2.3E-05 7.9E-10 85.2 12.4 114 494-611 16-134 (477)
165 3q7a_A Farnesyltransferase alp 98.0 0.0015 5.2E-08 66.3 24.0 99 468-570 140-257 (349)
166 1p5q_A FKBP52, FK506-binding p 98.0 4.6E-05 1.6E-09 78.7 13.0 119 452-574 146-283 (336)
167 3k9i_A BH0479 protein; putativ 98.0 6.4E-06 2.2E-10 70.2 5.2 83 567-649 2-89 (117)
168 3q49_B STIP1 homology and U bo 98.0 3.5E-05 1.2E-09 67.5 10.2 99 520-620 10-110 (137)
169 2xev_A YBGF; tetratricopeptide 98.0 2.1E-05 7.2E-10 68.1 8.5 90 560-649 7-104 (129)
170 1elr_A TPR2A-domain of HOP; HO 97.9 3.1E-05 1.1E-09 66.8 9.1 95 555-649 4-107 (131)
171 2fbn_A 70 kDa peptidylprolyl i 97.9 1.7E-05 5.8E-10 74.9 7.4 147 424-575 10-176 (198)
172 1elr_A TPR2A-domain of HOP; HO 97.9 7.6E-05 2.6E-09 64.3 10.8 115 485-632 5-123 (131)
173 3q7a_A Farnesyltransferase alp 97.9 0.00039 1.4E-08 70.6 17.2 209 436-649 72-330 (349)
174 3dss_A Geranylgeranyl transfer 97.9 0.0011 3.6E-08 67.2 20.3 77 435-512 91-173 (331)
175 2kck_A TPR repeat; tetratricop 97.9 6.8E-05 2.3E-09 62.5 9.9 99 521-621 8-111 (112)
176 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 6.4E-05 2.2E-09 81.3 12.0 145 483-649 267-414 (457)
177 3dss_A Geranylgeranyl transfer 97.8 0.00098 3.4E-08 67.4 19.6 177 469-649 90-303 (331)
178 4b4t_Q 26S proteasome regulato 97.8 8.8E-05 3E-09 79.7 12.2 163 487-649 58-244 (434)
179 1hxi_A PEX5, peroxisome target 97.8 7.1E-05 2.4E-09 64.0 9.1 98 522-621 20-119 (121)
180 3ro3_A PINS homolog, G-protein 97.8 5.5E-05 1.9E-09 68.1 8.9 93 557-649 51-157 (164)
181 2hr2_A Hypothetical protein; a 97.8 4.4E-05 1.5E-09 67.6 7.7 117 486-628 13-143 (159)
182 2xev_A YBGF; tetratricopeptide 97.8 0.00015 5E-09 62.6 10.9 98 526-625 9-114 (129)
183 2if4_A ATFKBP42; FKBP-like, al 97.8 4.7E-05 1.6E-09 78.7 8.5 146 485-650 180-328 (338)
184 3ro3_A PINS homolog, G-protein 97.8 9.8E-05 3.4E-09 66.3 9.7 132 486-617 11-159 (164)
185 1dce_A Protein (RAB geranylger 97.8 0.00043 1.5E-08 76.6 16.5 168 468-639 44-244 (567)
186 1ihg_A Cyclophilin 40; ppiase 97.8 8.4E-05 2.9E-09 77.7 10.3 138 484-642 223-362 (370)
187 3k9i_A BH0479 protein; putativ 97.7 3E-05 1E-09 66.0 5.6 92 532-624 3-98 (117)
188 4gcn_A Protein STI-1; structur 97.7 0.00019 6.7E-09 61.9 10.8 105 485-619 9-115 (127)
189 3ma5_A Tetratricopeptide repea 97.7 0.00014 4.8E-09 59.6 8.8 65 585-649 5-69 (100)
190 2if4_A ATFKBP42; FKBP-like, al 97.7 3.8E-05 1.3E-09 79.4 6.1 112 521-649 181-292 (338)
191 3rkv_A Putative peptidylprolyl 97.7 8.4E-05 2.9E-09 67.4 7.8 122 484-630 11-141 (162)
192 4b4t_Q 26S proteasome regulato 97.7 0.00025 8.4E-09 76.2 12.7 159 491-649 11-203 (434)
193 3n71_A Histone lysine methyltr 97.6 0.00017 5.7E-09 77.9 10.8 122 530-651 320-465 (490)
194 2l6j_A TPR repeat-containing p 97.6 9E-05 3.1E-09 61.9 6.9 93 554-646 3-103 (111)
195 1na3_A Designed protein CTPR2; 97.6 0.00026 8.8E-09 56.5 8.7 81 555-635 9-91 (91)
196 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00057 1.9E-08 73.8 13.9 64 587-650 317-380 (457)
197 2kat_A Uncharacterized protein 97.6 0.00019 6.4E-09 60.6 8.1 77 573-649 3-81 (115)
198 1ihg_A Cyclophilin 40; ppiase 97.6 0.00028 9.6E-09 73.7 11.0 111 520-649 224-335 (370)
199 1zu2_A Mitochondrial import re 97.5 4.9E-05 1.7E-09 67.1 3.9 83 567-649 14-119 (158)
200 3bee_A Putative YFRE protein; 97.4 0.00071 2.4E-08 54.3 8.4 69 584-652 3-74 (93)
201 3n71_A Histone lysine methyltr 97.3 0.00087 3E-08 72.3 10.5 115 564-696 318-450 (490)
202 1klx_A Cysteine rich protein B 97.2 0.0012 4E-08 57.8 9.1 90 561-652 31-128 (138)
203 2l6j_A TPR repeat-containing p 97.2 0.00081 2.8E-08 55.8 7.7 65 586-650 3-67 (111)
204 3qwp_A SET and MYND domain-con 97.2 0.0011 3.7E-08 70.4 10.4 116 562-695 294-427 (429)
205 1zu2_A Mitochondrial import re 97.1 0.00034 1.2E-08 61.8 4.2 73 572-651 63-148 (158)
206 1dce_A Protein (RAB geranylger 97.1 0.0051 1.7E-07 68.0 14.7 149 497-649 42-220 (567)
207 1na3_A Designed protein CTPR2; 97.1 0.0016 5.3E-08 51.7 7.5 64 586-649 8-71 (91)
208 2kat_A Uncharacterized protein 97.0 0.0022 7.6E-08 53.7 8.4 81 538-620 4-86 (115)
209 1klx_A Cysteine rich protein B 96.8 0.012 4E-07 51.3 11.2 112 498-618 9-128 (138)
210 3qww_A SET and MYND domain-con 96.7 0.0019 6.4E-08 68.5 6.3 82 568-649 311-410 (433)
211 2kc7_A BFR218_protein; tetratr 96.6 0.0049 1.7E-07 49.8 7.0 52 597-648 10-62 (99)
212 2kc7_A BFR218_protein; tetratr 96.5 0.011 3.8E-07 47.6 8.9 79 561-647 6-87 (99)
213 3ly7_A Transcriptional activat 96.5 0.053 1.8E-06 55.0 15.0 63 586-649 276-338 (372)
214 3ma5_A Tetratricopeptide repea 96.4 0.0063 2.1E-07 49.5 6.6 63 483-547 6-69 (100)
215 1pc2_A Mitochondria fission pr 96.3 0.016 5.5E-07 50.5 9.0 66 584-649 29-99 (152)
216 3qwp_A SET and MYND domain-con 96.3 0.022 7.7E-07 60.2 11.9 97 529-625 297-414 (429)
217 3u64_A Protein TP_0956; tetrat 96.3 0.027 9.4E-07 54.6 11.3 87 571-657 179-276 (301)
218 3qww_A SET and MYND domain-con 96.3 0.0074 2.5E-07 63.9 7.8 68 556-623 341-423 (433)
219 3ly7_A Transcriptional activat 96.2 0.041 1.4E-06 55.8 12.7 154 471-628 182-350 (372)
220 3lvg_A Clathrin heavy chain 1; 96.2 0.00076 2.6E-08 69.5 -0.0 419 80-578 53-535 (624)
221 1wy6_A Hypothetical protein ST 96.2 0.26 8.9E-06 41.1 14.6 140 495-653 18-157 (172)
222 3mkq_A Coatomer beta'-subunit; 95.8 0.12 4E-06 60.2 16.3 98 464-582 610-708 (814)
223 3lvg_A Clathrin heavy chain 1; 95.7 0.0018 6.3E-08 66.8 0.3 400 12-475 82-534 (624)
224 3mkq_A Coatomer beta'-subunit; 95.4 0.37 1.3E-05 55.9 18.6 103 461-581 660-762 (814)
225 2v5f_A Prolyl 4-hydroxylase su 95.4 0.074 2.5E-06 43.3 9.0 74 554-627 4-86 (104)
226 3bee_A Putative YFRE protein; 95.3 0.14 4.8E-06 40.6 9.9 77 552-629 3-84 (93)
227 3mkq_B Coatomer subunit alpha; 95.0 0.51 1.8E-05 42.1 13.5 129 461-613 13-141 (177)
228 1pc2_A Mitochondria fission pr 94.8 0.15 5.1E-06 44.3 9.3 71 553-623 30-107 (152)
229 2v5f_A Prolyl 4-hydroxylase su 93.1 0.3 1E-05 39.6 7.8 64 586-649 4-74 (104)
230 1nzn_A CGI-135 protein, fissio 93.1 0.24 8.1E-06 41.4 6.9 43 606-648 57-101 (126)
231 1qsa_A Protein (soluble lytic 92.8 14 0.00046 40.7 26.2 266 318-615 69-347 (618)
232 1y8m_A FIS1; mitochondria, unk 92.8 1.4 4.8E-05 37.4 11.3 66 584-649 36-105 (144)
233 3mkq_B Coatomer subunit alpha; 92.7 5.2 0.00018 35.6 18.2 129 427-582 14-142 (177)
234 4gns_B Protein CSD3, chitin bi 91.6 0.52 1.8E-05 52.9 9.5 54 594-647 344-397 (754)
235 3u64_A Protein TP_0956; tetrat 91.6 0.21 7.3E-06 48.4 5.5 63 557-619 201-272 (301)
236 1wy6_A Hypothetical protein ST 91.2 6 0.0002 33.2 15.0 62 387-449 95-156 (172)
237 1nzn_A CGI-135 protein, fissio 91.0 1.8 6E-05 36.1 9.8 35 590-624 77-111 (126)
238 1qsa_A Protein (soluble lytic 88.8 31 0.0011 37.8 32.5 93 65-161 54-148 (618)
239 4h7y_A Dual specificity protei 88.3 6.1 0.00021 33.9 11.1 107 481-621 10-128 (161)
240 4h7y_A Dual specificity protei 87.6 1.8 6E-05 37.2 7.4 56 599-654 72-127 (161)
241 3o48_A Mitochondria fission 1 87.2 1.9 6.7E-05 36.1 7.4 66 584-649 37-106 (134)
242 2wpv_A GET4, UPF0363 protein Y 86.7 26 0.00088 34.5 20.6 166 355-546 36-215 (312)
243 3lpz_A GET4 (YOR164C homolog); 86.6 27 0.00092 34.7 18.7 126 274-410 86-214 (336)
244 3lpz_A GET4 (YOR164C homolog); 86.4 28 0.00095 34.6 22.0 166 355-546 38-214 (336)
245 4b4t_P 26S proteasome regulato 86.1 17 0.00057 38.2 16.1 159 323-481 139-323 (445)
246 2ff4_A Probable regulatory pro 85.1 1.5 5E-05 45.6 7.1 68 590-657 174-246 (388)
247 2wpv_A GET4, UPF0363 protein Y 82.5 40 0.0014 33.2 17.7 126 274-410 84-215 (312)
248 4gns_B Protein CSD3, chitin bi 82.3 22 0.00074 40.0 15.3 52 492-545 345-397 (754)
249 4fhn_B Nucleoporin NUP120; pro 80.6 62 0.0021 38.8 19.8 141 423-572 817-988 (1139)
250 3ffl_A Anaphase-promoting comp 79.3 9.8 0.00034 33.3 8.8 26 622-647 123-148 (167)
251 1v54_E Cytochrome C oxidase po 79.3 6.2 0.00021 31.1 6.7 64 499-564 25-88 (109)
252 1v54_E Cytochrome C oxidase po 79.2 9.4 0.00032 30.1 7.7 49 580-628 38-86 (109)
253 3ffl_A Anaphase-promoting comp 78.2 7.5 0.00026 34.0 7.8 29 556-584 123-151 (167)
254 3o48_A Mitochondria fission 1 76.9 12 0.00041 31.3 8.3 34 588-621 79-112 (134)
255 2uwj_G Type III export protein 76.4 26 0.00088 27.5 9.4 86 433-523 21-106 (115)
256 2p58_C Putative type III secre 75.7 27 0.00093 27.4 9.6 86 433-523 22-107 (116)
257 4ady_A RPN2, 26S proteasome re 75.5 1.2E+02 0.0042 34.8 29.1 250 331-589 384-663 (963)
258 3ltm_A Alpha-REP4; protein eng 74.1 52 0.0018 29.9 20.2 61 451-512 124-184 (211)
259 1y8m_A FIS1; mitochondria, unk 71.0 47 0.0016 28.1 11.8 71 552-622 36-112 (144)
260 4fhn_B Nucleoporin NUP120; pro 71.0 45 0.0016 39.9 15.0 52 490-546 818-869 (1139)
261 1wdy_A 2-5A-dependent ribonucl 70.5 62 0.0021 30.7 13.8 50 57-106 9-61 (285)
262 2y69_E Cytochrome C oxidase su 70.2 13 0.00043 31.1 6.7 63 500-564 69-131 (152)
263 4b4t_P 26S proteasome regulato 69.9 1.1E+02 0.0038 31.9 19.6 96 486-581 139-244 (445)
264 2qx5_A Nucleoporin NIC96; mRNA 69.6 1.4E+02 0.0047 32.9 19.9 32 555-586 533-569 (661)
265 3ltj_A Alpharep-4; protein eng 69.4 64 0.0022 28.9 19.7 124 210-367 13-136 (201)
266 2ff4_A Probable regulatory pro 69.3 18 0.00062 37.2 9.7 67 489-557 176-247 (388)
267 3txn_A 26S proteasome regulato 69.2 1E+02 0.0036 31.4 22.1 287 324-653 22-346 (394)
268 2uwj_G Type III export protein 67.4 43 0.0015 26.2 10.3 78 296-381 20-97 (115)
269 3ltm_A Alpha-REP4; protein eng 67.2 73 0.0025 28.8 18.9 48 320-367 94-141 (211)
270 2y69_E Cytochrome C oxidase su 66.7 24 0.00083 29.4 7.7 53 576-628 77-129 (152)
271 2p58_C Putative type III secre 66.3 46 0.0016 26.1 11.2 78 296-381 21-98 (116)
272 1zbp_A Hypothetical protein VP 65.1 51 0.0018 31.4 10.8 121 493-625 6-138 (273)
273 3ltj_A Alpharep-4; protein eng 65.0 78 0.0027 28.3 20.1 59 452-511 120-178 (201)
274 1zbp_A Hypothetical protein VP 61.8 13 0.00044 35.5 6.1 57 564-620 6-64 (273)
275 1n11_A Ankyrin; clathrin, BAND 57.1 97 0.0033 31.9 13.0 71 35-106 27-102 (437)
276 4b4t_R RPN7, 26S proteasome re 56.2 42 0.0015 34.9 9.7 93 556-648 132-235 (429)
277 1n11_A Ankyrin; clathrin, BAND 55.9 1.2E+02 0.0041 31.3 13.4 17 90-106 20-36 (437)
278 3kea_A K1L; tropism, ANK repea 54.0 86 0.003 30.1 11.2 147 495-656 70-223 (285)
279 1wdy_A 2-5A-dependent ribonucl 48.7 1.8E+02 0.006 27.3 13.7 144 85-250 6-170 (285)
280 3esl_A Checkpoint serine/threo 47.4 1.2E+02 0.0043 27.3 9.8 79 575-654 64-148 (202)
281 2ion_A PDCD4, programmed cell 47.2 90 0.0031 26.8 8.7 68 325-392 13-85 (152)
282 2nsz_A Programmed cell death p 46.7 1.2E+02 0.0042 25.0 10.0 68 325-392 11-83 (129)
283 3b7b_A Euchromatic histone-lys 46.5 76 0.0026 29.2 9.2 195 35-251 24-233 (237)
284 3eu9_A Huntingtin-interacting 45.8 1.6E+02 0.0056 26.6 11.5 197 35-251 22-233 (240)
285 1ug3_A EIF4GI, eukaryotic prot 45.6 1.1E+02 0.0039 30.4 10.6 70 324-393 14-87 (339)
286 4b4t_R RPN7, 26S proteasome re 45.4 1.6E+02 0.0055 30.5 12.1 62 385-446 133-196 (429)
287 4ady_A RPN2, 26S proteasome re 42.6 4.5E+02 0.015 30.3 33.1 164 361-530 499-672 (963)
288 3kea_A K1L; tropism, ANK repea 41.9 70 0.0024 30.8 8.2 52 56-107 34-85 (285)
289 2qx5_A Nucleoporin NIC96; mRNA 41.5 1.3E+02 0.0043 33.2 10.7 16 632-647 549-564 (661)
290 3mv2_A Coatomer subunit alpha; 40.8 1E+02 0.0036 30.2 8.8 61 578-652 196-258 (325)
291 2y1l_E Darpin-8.4; hydrolase-i 39.6 1E+02 0.0034 26.5 8.3 71 35-106 27-102 (169)
292 3eiq_C Programmed cell death p 35.3 3.5E+02 0.012 27.0 19.8 63 456-518 220-287 (358)
293 2nsz_A Programmed cell death p 34.9 1.2E+02 0.004 25.2 7.2 64 456-519 10-78 (129)
294 2l0z_A Glycoprotein G2; zinc-b 34.0 12 0.00039 23.5 0.6 18 772-789 11-29 (42)
295 3ljn_A Hypothetical protein; a 33.4 1.5E+02 0.0051 29.5 9.5 86 57-145 24-112 (364)
296 2lo3_A SAGA-associated factor 32.5 18 0.00061 22.9 1.2 13 746-758 16-28 (44)
297 3esl_A Checkpoint serine/threo 32.5 2.1E+02 0.0071 25.9 8.7 63 354-417 82-149 (202)
298 2ko4_A Mediator of RNA polymer 31.8 77 0.0026 23.4 4.6 41 101-141 23-63 (81)
299 2ion_A PDCD4, programmed cell 31.7 1.6E+02 0.0056 25.2 7.8 66 354-419 11-81 (152)
300 2pk8_A Uncharacterized protein 31.2 34 0.0012 26.1 2.8 46 678-731 13-58 (103)
301 4a1g_A Mitotic checkpoint seri 31.0 2.2E+02 0.0075 24.4 8.3 49 606-654 84-134 (152)
302 3bqo_A Telomeric repeat-bindin 30.9 1.9E+02 0.0064 26.0 7.9 35 594-628 124-158 (211)
303 2r9g_A AAA ATPase, central reg 30.9 2.7E+02 0.0091 25.1 9.0 44 490-534 17-63 (204)
304 1k1a_A B-cell lymphoma 3-encod 30.0 3.1E+02 0.011 24.7 12.1 82 24-108 17-103 (241)
305 3b7b_A Euchromatic histone-lys 29.9 2.9E+02 0.0099 25.0 10.3 51 56-107 14-67 (237)
306 4b4t_S RPN3, 26S proteasome re 29.5 1.9E+02 0.0064 30.6 9.2 61 521-581 233-296 (523)
307 2wvi_A Mitotic checkpoint seri 29.2 2.7E+02 0.0092 24.2 8.7 49 606-654 79-129 (164)
308 1oyz_A Hypothetical protein YI 28.9 3.7E+02 0.013 25.2 24.1 12 558-569 209-220 (280)
309 2d2s_A Exocyst complex compone 28.0 2.2E+02 0.0075 26.5 8.6 22 231-252 24-45 (235)
310 1oyz_A Hypothetical protein YI 27.3 3.9E+02 0.013 25.0 22.1 18 416-433 140-157 (280)
311 3eiq_C Programmed cell death p 26.6 4.9E+02 0.017 25.9 16.7 69 324-392 220-293 (358)
312 3eu9_A Huntingtin-interacting 26.5 3.5E+02 0.012 24.2 11.1 47 60-106 16-64 (240)
313 3txn_A 26S proteasome regulato 25.4 5.4E+02 0.019 26.0 26.6 151 457-612 103-280 (394)
314 1qc6_A EVH1 domain from ENA/VA 24.7 23 0.00077 29.7 1.0 40 738-785 44-87 (130)
315 2k0q_A Putative uncharacterize 24.4 23 0.00078 25.4 0.8 22 766-787 8-29 (74)
316 4gq2_M Nucleoporin NUP120; bet 24.3 5.9E+02 0.02 29.5 13.3 114 490-620 816-931 (950)
317 3ygs_P Procaspase 9; apoptosis 23.4 1.2E+02 0.0042 23.5 5.1 32 336-367 52-83 (97)
318 3hra_A Ankyrin repeat family p 23.2 3.7E+02 0.013 23.3 9.5 13 208-220 117-129 (201)
319 2wvi_A Mitotic checkpoint seri 23.1 2.7E+02 0.0091 24.2 7.5 47 371-417 79-130 (164)
320 2r9g_A AAA ATPase, central reg 22.7 4.2E+02 0.014 23.8 9.6 44 389-433 17-63 (204)
321 3aji_A 26S proteasome non-ATPa 22.6 4.1E+02 0.014 23.8 9.8 177 54-250 7-194 (231)
322 2d2s_A Exocyst complex compone 22.4 3.1E+02 0.011 25.5 8.5 20 491-510 98-117 (235)
323 3twe_A Alpha4H; unknown functi 21.7 1E+02 0.0034 16.6 2.7 17 680-696 3-19 (27)
324 3ljn_A Hypothetical protein; a 21.6 3.3E+02 0.011 26.9 9.5 19 329-347 58-76 (364)
325 3mkr_B Coatomer subunit alpha; 21.6 2.5E+02 0.0086 27.4 7.8 61 578-652 187-249 (320)
326 2rfa_A Transient receptor pote 21.5 4.1E+02 0.014 23.8 9.6 182 84-307 3-219 (232)
327 1ug3_A EIF4GI, eukaryotic prot 21.5 2.3E+02 0.0078 28.1 7.9 78 189-275 15-96 (339)
328 1ya0_A SMG-7 transcript varian 21.3 1.9E+02 0.0065 30.5 7.6 52 594-645 159-210 (497)
329 3bge_A Predicted ATPase; struc 21.1 3E+02 0.01 24.7 7.5 44 490-533 10-56 (201)
330 4g8k_A 2-5A-dependent ribonucl 20.8 5.7E+02 0.019 24.6 15.3 254 4-306 13-322 (337)
331 3ctd_A Putative ATPase, AAA fa 20.3 3.8E+02 0.013 24.3 8.0 45 490-534 38-85 (213)
332 2p1h_A APAF-1, apoptotic prote 20.1 2.6E+02 0.0088 21.3 6.4 60 35-98 25-84 (94)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.8e-40 Score=376.67 Aligned_cols=493 Identities=10% Similarity=-0.028 Sum_probs=307.4
Q ss_pred hcCChhHHHHHhhhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhh
Q 003868 62 KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMR 141 (790)
Q Consensus 62 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~ 141 (790)
+.|.+..+...+..++.++...|+.++..|.+.|++++|..+|+++....|+..+|+.++.+|.+.|++++|+.+|+.+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 144 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKED 144 (597)
T ss_dssp -----------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC
T ss_pred ccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHh
Confidence 34444444445554444455555555555555555555555555443222444455555555555555555555555443
Q ss_pred hCCCCCChhhHHHHHHHHhcchhhhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCC
Q 003868 142 RDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMP 221 (790)
Q Consensus 142 ~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~ 221 (790)
. ..++..+++.++.+|.++ |++++|.++|+++.
T Consensus 145 ~--------------------------------------~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~ 177 (597)
T 2xpi_A 145 L--------------------------------------YNRSSACRYLAAFCLVKL---------YDWQGALNLLGETN 177 (597)
T ss_dssp G--------------------------------------GGTCHHHHHHHHHHHHHT---------TCHHHHHHHHCSSC
T ss_pred c--------------------------------------cccchhHHHHHHHHHHHH---------hhHHHHHHHHhccC
Confidence 1 245667788888888998 99999999999544
Q ss_pred CC-------------------CeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCCh
Q 003868 222 ER-------------------DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDE 282 (790)
Q Consensus 222 ~~-------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~ 282 (790)
.. +..+|+.++.+|.+.|++++|+++|++|. .. .|+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------------------~~--~p~~ 233 (597)
T 2xpi_A 178 PFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEAL----------------------MV--DAKC 233 (597)
T ss_dssp TTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------HH--CTTC
T ss_pred CccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------Hh--Cchh
Confidence 33 47899999999999999999999999983 32 3443
Q ss_pred h-hHHHHHHHHHccCChHH--HHHH-HHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--CChhHHH
Q 003868 283 F-TYTSVISACANSGLFRL--GKQV-HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--RDLVSWN 356 (790)
Q Consensus 283 ~-t~~~ll~~~~~~~~~~~--a~~~-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~ 356 (790)
. .+..+...+...+..+. +..+ +..+.. .+......+++.++.+|.+.|++++|.++|+++.+ ++..+|+
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 309 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK----EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLL 309 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHG----GGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCccccc----chHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHH
Confidence 3 33333332222211111 1111 233333 34444556677778888888999999999998887 7888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcc---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 003868 357 AILSAYVSAGLIDEAKSLFEAMRE---RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433 (790)
Q Consensus 357 ~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 433 (790)
.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|..+|+++.... +.+..++..+...|.+.|+
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 310 CKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhcc
Confidence 888888888888888888887764 245677888888888888888888888777542 4456666677777777777
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 003868 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQM 510 (790)
Q Consensus 434 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 510 (790)
+++|.++++.+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++
T Consensus 389 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 389 ISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777766643 33455666666666666666666666665532 35566666666666666666666666666
Q ss_pred HHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCC---CCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 003868 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY---GIPPG--EDHYARFIDLLCRAGKFSEAKDVIDSL-PFK 584 (790)
Q Consensus 511 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 584 (790)
.+.. ..+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ ...
T Consensus 468 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 468 YALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 6531 2244566666666666666666666666665421 33454 556666666666666666666666654 222
Q ss_pred C-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHH
Q 003868 585 P-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632 (790)
Q Consensus 585 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 632 (790)
| +..+|..+...|...|++++|.+.++++++++|+++.++..|+++|.
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 3 55666666666666666666666666666666666666666666553
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-38 Score=362.88 Aligned_cols=495 Identities=11% Similarity=-0.012 Sum_probs=394.0
Q ss_pred HHhcCCChHHHHHHHhhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchhhhhhh
Q 003868 90 AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC 169 (790)
Q Consensus 90 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~ 169 (790)
.+.+.|.+..++..|+.++. +++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~--------------- 122 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSL--SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFW--------------- 122 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHH---------------
T ss_pred cccccCccCCCCCccccchH--HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHH---------------
Confidence 35667888888999998887 8999999999999999999999999999984 3455555444
Q ss_pred hhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccC--CCCCeeeHHHHHHHHHhCCChhHHHHH
Q 003868 170 MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEM--PERDELSWTTMMTGYVKNDYLDAAREF 247 (790)
Q Consensus 170 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l 247 (790)
+..+|.+. |++++|..+|+.+ ..++..+|+.++.+|.+.|++++|+++
T Consensus 123 ---------------------l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 172 (597)
T 2xpi_A 123 ---------------------LAQVYCCT---------GDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNL 172 (597)
T ss_dssp ---------------------HHHHHHHT---------TCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------------------HHHHHHHc---------CcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHH
Confidence 44445555 9999999999998 457899999999999999999999999
Q ss_pred HHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHH
Q 003868 248 LDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327 (790)
Q Consensus 248 ~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 327 (790)
|+++...+.... ++.+. .-...+.+++..++..++.+|.+.|++++|.+.++.+.+ .++. +...+..+
T Consensus 173 ~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~-~~~~~~~l 240 (597)
T 2xpi_A 173 LGETNPFRKDEK-----NANKL--LMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM----VDAK-CYEAFDQL 240 (597)
T ss_dssp HCSSCTTC-----------------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTT-CHHHHHHH
T ss_pred HhccCCcccccc-----ccccc--cccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCch-hhHHHHHH
Confidence 996532210000 00000 001224556788999999999999999999999999987 4332 45566666
Q ss_pred HHHHHHCCCHHHHHHH---HhhCCC----CChhHHHHHHHHHHHcCCHHHHHHHHHHhcc--CChhHHHHHHHHHHhcCC
Q 003868 328 VTLYWKCGKVNEARDI---FNQMPE----RDLVSWNAILSAYVSAGLIDEAKSLFEAMRE--RNLLSWTVMISGLAQNGY 398 (790)
Q Consensus 328 i~~~~~~g~~~~A~~~---f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~ 398 (790)
...+...+..+.+... |..+.. .....|+.++..|.+.|++++|.++|+++.+ ++..+|+.++..|.+.|+
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR 320 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTC
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcC
Confidence 6555444333222111 222222 2334577778899999999999999999987 788999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 003868 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478 (790)
Q Consensus 399 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 478 (790)
+++|+.+|+++.+.+ +.+..++..++.++.+.|++++|.+++..+.+.. +.+..+++.++.+|.++|++++|.++|++
T Consensus 321 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 321 FIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 999999999999875 3477889999999999999999999999999664 66788999999999999999999999998
Q ss_pred CCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCCh
Q 003868 479 MPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555 (790)
Q Consensus 479 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 555 (790)
+.+ .+..+|+.++.+|.+.|++++|+++|++|.+.+ .++..++..++.+|.+.|++++|.++|+.+.+. .+.+.
T Consensus 399 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 475 (597)
T 2xpi_A 399 SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDP 475 (597)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCh
Confidence 753 578899999999999999999999999999852 346689999999999999999999999999863 35578
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHh
Q 003868 556 DHYARFIDLLCRAGKFSEAKDVIDSL-------PFKPS--APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626 (790)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 626 (790)
.+|..++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|+..++++++..|+++.+|..
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 555 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTA 555 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 89999999999999999999999987 45787 7899999999999999999999999999999999999999
Q ss_pred hHHHHHhcCChhHHHHHHHHHHhC
Q 003868 627 LSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 627 l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
++.+|.+.|++++|.++++++.+.
T Consensus 556 l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 556 IALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999763
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=3.8e-27 Score=257.72 Aligned_cols=184 Identities=12% Similarity=0.150 Sum_probs=165.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC---------hHHHHHHHHHHHHhCCCCchh
Q 003868 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA---------LENGRQLHAQLVHSGYDSSLS 454 (790)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---------~~~a~~i~~~~~~~g~~~~~~ 454 (790)
..++.+|.+|++.|++++|+++|++|.+.|++||.+||+++|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35777788888888899999999999999999999999999999987654 678999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 003868 455 AGNALITMYARCGVVEAANCVFNTMPN----VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530 (790)
Q Consensus 455 ~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 530 (790)
+||+||.+|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999998863 7999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhc
Q 003868 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568 (790)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 568 (790)
+.|++++|.++|++|.+. +..|+..||+.+++.|++.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999886 9999999999999988763
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=2.6e-24 Score=231.14 Aligned_cols=371 Identities=13% Similarity=0.123 Sum_probs=310.8
Q ss_pred HHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCCh-hhHHHHHHHHHccCChHHHHHHHHHHH
Q 003868 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDE-FTYTSVISACANSGLFRLGKQVHAYLL 309 (790)
Q Consensus 231 li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~ 309 (790)
+...+.+.|++++|.+.+.++ ....|+. ..+..+...+...|+++.|...+...+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~------------------------~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~ 60 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQL------------------------WRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH------------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH------------------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345677889999999999876 2234654 445555666788899999999999888
Q ss_pred HhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHhccC---Ch
Q 003868 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--R-DLVSWNAILSAYVSAGLIDEAKSLFEAMRER---NL 383 (790)
Q Consensus 310 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~ 383 (790)
+ .. +.+...+..+...|.+.|++++|...|+++.+ | +..+|..+..++.+.|++++|.+.|+++.+. +.
T Consensus 61 ~----~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 135 (388)
T 1w3b_A 61 K----QN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY 135 (388)
T ss_dssp H----HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT
T ss_pred h----cC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 6 33 34678899999999999999999999998763 4 4567999999999999999999999988753 34
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003868 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463 (790)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 463 (790)
..+..+...+...|++++|.+.|+++.... +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...+
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 213 (388)
T 1w3b_A 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVL 213 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 678888899999999999999999998763 3456788889999999999999999999998875 45577888899999
Q ss_pred HhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCCHHHHH
Q 003868 464 ARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD-RITFLTVLSACNHAGLVKEGR 539 (790)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 539 (790)
...|++++|...|++..+ .+..+|..+...|...|++++|++.|+++.+ ..|+ ..++..+..++...|++++|.
T Consensus 214 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~ 291 (388)
T 1w3b_A 214 KEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp HTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999987643 3678899999999999999999999999998 4565 457888889999999999999
Q ss_pred HHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 003868 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617 (790)
Q Consensus 540 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 617 (790)
..|+.+.+ ..+.+...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...+++++++.
T Consensus 292 ~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 292 DCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999886 34667888999999999999999999999886 3444 56789999999999999999999999999999
Q ss_pred CCCCcchHhhHHHHHhcCC
Q 003868 618 PHHAGTYVLLSNMYANLGR 636 (790)
Q Consensus 618 p~~~~~~~~l~~~~~~~g~ 636 (790)
|+++.+|..++.++...|+
T Consensus 370 p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 370 PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHhHHHHHHHccC
Confidence 9999999999988877664
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=1.2e-23 Score=226.09 Aligned_cols=349 Identities=15% Similarity=0.141 Sum_probs=306.5
Q ss_pred HHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHc
Q 003868 289 ISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNAILSAYVSA 365 (790)
Q Consensus 289 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 365 (790)
...+.+.|++++|.+.+..+.+ .. +.+...+..+...+.+.|++++|...++...+ .+..+|..+...|.+.
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~----~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWR----QE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH----HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH----hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC
Confidence 3456778999999999999887 43 33567788888999999999999999987653 4677899999999999
Q ss_pred CCHHHHHHHHHHhcc--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCChHHHHHHH
Q 003868 366 GLIDEAKSLFEAMRE--R-NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC-DYAFAGAITSCAGLGALENGRQLH 441 (790)
Q Consensus 366 g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~i~ 441 (790)
|++++|.+.|+++.+ | +..+|..++..+.+.|++++|+..|+++.+.. |+ ...+..+...+...|++++|.+.+
T Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 999999999999875 3 45689999999999999999999999998863 44 445667778888999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003868 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518 (790)
Q Consensus 442 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 518 (790)
..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+ ..|+
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~ 235 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPN 235 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcC
Confidence 9999874 45678899999999999999999999998763 3677899999999999999999999999988 4675
Q ss_pred -hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHH
Q 003868 519 -RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-P-FKPSAPIWEALLA 595 (790)
Q Consensus 519 -~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~ 595 (790)
..++..+..++...|++++|...|+.+.+. .+.+...|..+...|.+.|++++|.+.++++ . .+.+..+|..+..
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 468889999999999999999999999863 3445788999999999999999999999987 2 3457889999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 596 GCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 596 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.+...|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999975
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.93 E-value=1.9e-25 Score=244.24 Aligned_cols=200 Identities=12% Similarity=0.118 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---------H
Q 003868 400 EEGLKLFSQMRLEGFKPCD-YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV---------V 469 (790)
Q Consensus 400 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~---------~ 469 (790)
..+..+.+++.+.+..+.. ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4556667778777766543 46888999999999999999999999999999999999999999998765 7
Q ss_pred HHHHHHHhcCC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHc
Q 003868 470 EAANCVFNTMP----NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETM 545 (790)
Q Consensus 470 ~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 545 (790)
+.|.++|++|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999986 48999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHHh
Q 003868 546 HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL---PFKPSAPIWEALLAGCRIH 600 (790)
Q Consensus 546 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~ 600 (790)
.+. |+.||..+|++||++|++.|++++|.+++++| +..|+..||+.++..+...
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 987 99999999999999999999999999999998 6899999999999988764
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=5.2e-21 Score=209.72 Aligned_cols=322 Identities=12% Similarity=0.104 Sum_probs=270.0
Q ss_pred CCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHH
Q 003868 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNAILSAYVSAGLIDEAKSLFEAMRER---NLLSWTVMIS 391 (790)
Q Consensus 318 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~ 391 (790)
+.+...+..+...|.+.|++++|..+|+.+.+ .+..+|..+...|.+.|++++|...|+++.+. +..+|..++.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 34677888889999999999999999988763 46778999999999999999999999988753 4678899999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHH------------HHHHHccCChHHHHHHHHHHHHhCCCCchhH
Q 003868 392 GLAQNGYGEEGLKLFSQMRLEGFKPCD----YAFAGA------------ITSCAGLGALENGRQLHAQLVHSGYDSSLSA 455 (790)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~ 455 (790)
.|.+.|++++|...|+++... .|+. ..+..+ ...+...|++++|...+..+.+.. +.+..+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 999999999999999999875 3443 344444 344888999999999999998874 557788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh-HHHH------
Q 003868 456 GNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT-FLTV------ 525 (790)
Q Consensus 456 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~l------ 525 (790)
+..+..+|.+.|++++|.+.|+++.+ .+..+|..++..|...|++++|+..|+++.+ ..|+... +..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHH
Confidence 99999999999999999999998764 5788999999999999999999999999997 5676654 3333
Q ss_pred ------HHHHHccCCHHHHHHHHHHcccCCCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHH
Q 003868 526 ------LSACNHAGLVKEGRRYFETMHGPYGIPPG-----EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEA 592 (790)
Q Consensus 526 ------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 592 (790)
..+|.+.|++++|..+|+.+.+. .|+ ..+|..++.++.+.|++++|.+.++++ ...| +..+|..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 78899999999999999999863 344 458899999999999999999999986 3344 6889999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhH------------HHHHhcC-----ChhHHHHHHHHH
Q 003868 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS------------NMYANLG-----RWDDAARVRKLM 647 (790)
Q Consensus 593 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~a~~~~~~m 647 (790)
+..+|...|++++|...+++++++.|+++..+..++ +.|...| +.+++.+.++++
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 5566666 455667666653
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.8e-21 Score=213.86 Aligned_cols=390 Identities=11% Similarity=-0.012 Sum_probs=313.4
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHH
Q 003868 226 LSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305 (790)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 305 (790)
..|......+.+.|++++|+..|+++ .... ||..++..+..++...|+++.|...+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~a----------------------l~~~--p~~~~~~~la~~~~~~g~~~~A~~~~ 62 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWA----------------------LELK--EDPVFYSNLSACYVSVGDLKKVVEMS 62 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHH----------------------HHHC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH----------------------HhcC--ccHHHHHhHHHHHHHHhhHHHHHHHH
Confidence 34666788899999999999999988 3333 89999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHh----
Q 003868 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNAILSAYVSAGLIDEAKSLFEAM---- 378 (790)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m---- 378 (790)
..+++ .. +.+..++..+..+|.+.|++++|...|+.+.. .+......++..+........+.+.+..+
T Consensus 63 ~~al~----~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 137 (514)
T 2gw1_A 63 TKALE----LK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTAT 137 (514)
T ss_dssp HHHHH----HC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHhc----cC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997 44 33678899999999999999999999998753 23334444444443332222222222100
Q ss_pred ----------------------------------cc---------C-ChhHHHHHHHHHHh---cCChHHHHHHHHHHHH
Q 003868 379 ----------------------------------RE---------R-NLLSWTVMISGLAQ---NGYGEEGLKLFSQMRL 411 (790)
Q Consensus 379 ----------------------------------~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~ 411 (790)
.. + +...+......+.. .|++++|+..|+++..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 217 (514)
T 2gw1_A 138 ATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217 (514)
T ss_dssp -------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH
T ss_pred HhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence 00 1 13344555555554 8999999999999987
Q ss_pred -----cCCC--------CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 003868 412 -----EGFK--------PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478 (790)
Q Consensus 412 -----~g~~--------p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 478 (790)
..-. .+..++..+...+...|++++|...+..+.+.... ...+..+...|...|++++|.+.|++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~ 295 (514)
T 2gw1_A 218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDK 295 (514)
T ss_dssp HHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHH
T ss_pred HhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3112 23456777888899999999999999999988644 88899999999999999999999997
Q ss_pred CCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC
Q 003868 479 MPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD-RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554 (790)
Q Consensus 479 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 554 (790)
+.+ .+...|..+...+...|++++|+..|++..+. .|+ ..++..+...+...|++++|..+++.+.+. .+.+
T Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~ 371 (514)
T 2gw1_A 296 ALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEA 371 (514)
T ss_dssp HHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTC
T ss_pred HhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccC
Confidence 654 46778999999999999999999999999984 454 467888889999999999999999998863 3445
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHH---hCCHHHHHHHHHHHHhcCCCCCcc
Q 003868 555 EDHYARFIDLLCRAGKFSEAKDVIDSL----PFKPS----APIWEALLAGCRI---HGNIDLGIQAAEQLFQLMPHHAGT 623 (790)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~ 623 (790)
...+..+...|.+.|++++|.+.++++ +..++ ...|..+...+.. .|++++|...++++++..|+++.+
T Consensus 372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 451 (514)
T 2gw1_A 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQA 451 (514)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHH
Confidence 778899999999999999999999876 22222 4489999999999 999999999999999999999999
Q ss_pred hHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 624 YVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 624 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
+..++.+|...|++++|.+.+++..+.
T Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 452 KIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999999999999763
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=1.1e-19 Score=199.24 Aligned_cols=349 Identities=12% Similarity=0.014 Sum_probs=283.9
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHH
Q 003868 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWN 356 (790)
Q Consensus 280 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~ 356 (790)
.+...+..+...+...|+++.|..++..+++ .. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 98 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVD----GD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARL 98 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 3556788888999999999999999999987 33 33688999999999999999999999999864 3577899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCh------hHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003868 357 AILSAYVSAGLIDEAKSLFEAMRERNL------LSWTVM------------ISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418 (790)
Q Consensus 357 ~li~~~~~~g~~~~A~~~~~~m~~~~~------~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 418 (790)
.+...|.+.|++++|.+.|+++.+.++ ..|..+ ...+.+.|++++|+..|+++.... +.+.
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 999999999999999999999987543 555555 444899999999999999998763 4577
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CHhHHHHH-----
Q 003868 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--V-DSVSWNAM----- 490 (790)
Q Consensus 419 ~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~l----- 490 (790)
..+..+..++...|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++.+ | +...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 889999999999999999999999998874 45688999999999999999999999998753 3 45555555
Q ss_pred -------HHHHHhcCChHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHH
Q 003868 491 -------IAALGQHGNGARAIELYEQMLKEGILPDR-----ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558 (790)
Q Consensus 491 -------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 558 (790)
...+...|++++|+..|+++.+ ..|+. ..+..+..++.+.|++++|..+++.+.+. .+.+...|
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~ 332 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHH
Confidence 7889999999999999999998 56663 46788889999999999999999998763 34468899
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH------------HHHhC-----CHHHHHHHHHH-HHhcCC
Q 003868 559 ARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAG------------CRIHG-----NIDLGIQAAEQ-LFQLMP 618 (790)
Q Consensus 559 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~------------~~~~g-----~~~~a~~~~~~-~~~~~p 618 (790)
..+..+|.+.|++++|.+.++++ ...| +...+..+..+ |...| +.+++.+.+++ +++..|
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~p 412 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHP 412 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999986 5556 45566666633 22333 56777888886 677787
Q ss_pred CCCc----------chHhhHHHHHhcCChhH
Q 003868 619 HHAG----------TYVLLSNMYANLGRWDD 639 (790)
Q Consensus 619 ~~~~----------~~~~l~~~~~~~g~~~~ 639 (790)
++.. .+..+..+|...|+.++
T Consensus 413 d~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 413 DNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp GGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 7532 34455555555555443
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=5.6e-20 Score=205.19 Aligned_cols=396 Identities=10% Similarity=-0.035 Sum_probs=312.7
Q ss_pred HHHHHhhhccCCCCccCCCCCHHHHHHHHccCC--CCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhh
Q 003868 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMP--ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266 (790)
Q Consensus 189 ~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~ 266 (790)
..+-..|.+. |++++|...|+++. .|+...|..+..+|.+.|++++|+..|+++
T Consensus 10 ~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~a--------------- 65 (514)
T 2gw1_A 10 KDKGNQFFRN---------KKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKA--------------- 65 (514)
T ss_dssp HHHHHHHHHT---------SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHh---------ccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHH---------------
Confidence 3344556666 99999999999885 378889999999999999999999999987
Q ss_pred hhhHHHHHHhCccC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHH-
Q 003868 267 VHRELKMLMLRIQL-DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF- 344 (790)
Q Consensus 267 ~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f- 344 (790)
... .| +..++..+..++...|++++|...+..+.+ .++. +......++..+.+......+.+.+
T Consensus 66 -------l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 131 (514)
T 2gw1_A 66 -------LEL--KPDYSKVLLRRASANEGLGKFADAMFDLSVLSL----NGDF-NDASIEPMLERNLNKQAMSKLKEKFG 131 (514)
T ss_dssp -------HHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----SSSC-CGGGTHHHHHHHHHHHHHHHHTTC--
T ss_pred -------hcc--ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh----cCCC-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 34 456888999999999999999999999988 4432 3333444444444332222222222
Q ss_pred -------------------------------------hhCCC---------C-ChhHHHHHHHHHHH---cCCHHHHHHH
Q 003868 345 -------------------------------------NQMPE---------R-DLVSWNAILSAYVS---AGLIDEAKSL 374 (790)
Q Consensus 345 -------------------------------------~~m~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~ 374 (790)
..... | +...+......+.. .|++++|...
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 211 (514)
T 2gw1_A 132 DIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADES 211 (514)
T ss_dssp -------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHH
T ss_pred HHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHH
Confidence 11110 1 13344444444454 8999999999
Q ss_pred HHHhcc-----C------------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHH
Q 003868 375 FEAMRE-----R------------NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437 (790)
Q Consensus 375 ~~~m~~-----~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 437 (790)
|+++.+ . +..+|..+...+...|++++|+..|+++.... |+...+..+...+...|++++|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A 289 (514)
T 2gw1_A 212 FTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEY 289 (514)
T ss_dssp HHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTG
T ss_pred HHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHH
Confidence 998876 2 24678899999999999999999999998865 3377888899999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003868 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514 (790)
Q Consensus 438 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 514 (790)
...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|+++.+.
T Consensus 290 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 367 (514)
T 2gw1_A 290 YNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK- 367 (514)
T ss_dssp GGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-
Confidence 99999998864 45677899999999999999999999997642 46778999999999999999999999999984
Q ss_pred CCC-ChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC----hhHHHHHHHHHHh---cCChHHHHHHHHhC-CCC-
Q 003868 515 ILP-DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG----EDHYARFIDLLCR---AGKFSEAKDVIDSL-PFK- 584 (790)
Q Consensus 515 ~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~~- 584 (790)
.| +..++..+...+...|++++|..+++.+.+...-.++ ...+..+...+.+ .|++++|.+.++++ ...
T Consensus 368 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 368 -FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446 (514)
T ss_dssp -STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred -cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence 45 4568888999999999999999999988753122222 3488999999999 99999999999886 223
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhh
Q 003868 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627 (790)
Q Consensus 585 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 627 (790)
.+..+|..+...+...|++++|...+++++++.|+++..+..+
T Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3677899999999999999999999999999999987776655
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=2.6e-19 Score=200.96 Aligned_cols=389 Identities=10% Similarity=0.023 Sum_probs=303.9
Q ss_pred eeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHH
Q 003868 225 ELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304 (790)
Q Consensus 225 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 304 (790)
...|..+...+.+.|++++|++.|+++ .... +.+..++..+..++...|+++.|.+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~a----------------------l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~ 81 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYA----------------------IELD-PNEPVFYSNISACYISTGDLEKVIEF 81 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHH----------------------HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHH----------------------HhhC-CCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 456778889999999999999999987 2221 23667888899999999999999999
Q ss_pred HHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCC--
Q 003868 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN-- 382 (790)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-- 382 (790)
+..+++ .++ .+..++..+..+|.+.|++++|...|+.+. .+....+..+..+...+...+|...++.+...+
T Consensus 82 ~~~al~----~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~ 155 (537)
T 3fp2_A 82 TTKALE----IKP-DHSKALLRRASANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEG 155 (537)
T ss_dssp HHHHHH----HCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHh----cCC-chHHHHHHHHHHHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 999997 443 367889999999999999999999997543 222233334555666666777887777775421
Q ss_pred -----------------------------------hh---HHHHHHHHHH--------hcCChHHHHHHHHHHHHcCCCC
Q 003868 383 -----------------------------------LL---SWTVMISGLA--------QNGYGEEGLKLFSQMRLEGFKP 416 (790)
Q Consensus 383 -----------------------------------~~---~~~~li~~~~--------~~g~~~~A~~~~~~m~~~g~~p 416 (790)
.. .+..+...+. ..|++++|+.+|+++.+.. |
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p 233 (537)
T 3fp2_A 156 RGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--T 233 (537)
T ss_dssp ---CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----C
T ss_pred ccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--C
Confidence 00 1222222222 1247899999999998753 3
Q ss_pred C--------HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHh
Q 003868 417 C--------DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSV 485 (790)
Q Consensus 417 ~--------~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~ 485 (790)
+ ..++..+...+...|++++|...+..+.+.. |+...+..+...|...|++++|.+.|+++.+ .+..
T Consensus 234 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 311 (537)
T 3fp2_A 234 VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP 311 (537)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHH
T ss_pred CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH
Confidence 3 2346666677888999999999999999875 4478888999999999999999999998753 4678
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHH
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPD-RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 564 (790)
+|..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|..+++.+.+. .+.+...+..+...
T Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 387 (537)
T 3fp2_A 312 TYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEI 387 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHH
Confidence 8999999999999999999999999984 454 468888999999999999999999999863 34557789999999
Q ss_pred HHhcCChHHHHHHHHhC----C----CCCCHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHhcCCCCCcchHh
Q 003868 565 LCRAGKFSEAKDVIDSL----P----FKPSAPIWEALLAGCRIH----------GNIDLGIQAAEQLFQLMPHHAGTYVL 626 (790)
Q Consensus 565 ~~~~g~~~~A~~~~~~~----~----~~p~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~ 626 (790)
+.+.|++++|.+.++++ + .......+..+...+... |++++|...++++++..|+++.++..
T Consensus 388 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 467 (537)
T 3fp2_A 388 LTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIG 467 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999876 1 111223345556677777 99999999999999999999999999
Q ss_pred hHHHHHhcCChhHHHHHHHHHHhC
Q 003868 627 LSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 627 l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
++.+|...|++++|.+.+++..+.
T Consensus 468 l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 468 LAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999999763
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=6e-19 Score=198.04 Aligned_cols=294 Identities=11% Similarity=0.024 Sum_probs=223.1
Q ss_pred HHHHHHHCCCHHHHHHHHhhCCCCChh---HHHHHHHHHHH--------cCCHHHHHHHHHHhccCCh----------hH
Q 003868 327 LVTLYWKCGKVNEARDIFNQMPERDLV---SWNAILSAYVS--------AGLIDEAKSLFEAMRERNL----------LS 385 (790)
Q Consensus 327 li~~~~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~----------~~ 385 (790)
.+..|....+.+.+...+......+.. .+..+...+.. .|++++|..+|+++.+.++ .+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 245 (537)
T 3fp2_A 166 SLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALA 245 (537)
T ss_dssp HHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHH
Confidence 344455566666666666665543332 22222222221 2477888888888776432 25
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 003868 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465 (790)
Q Consensus 386 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 465 (790)
|..+...+...|++++|+..|++.... .|+...+..+...+...|++++|...+..+.+.. +.+..++..+...|..
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHh
Confidence 677778888899999999999999885 4567788888888999999999999999998875 4567789999999999
Q ss_pred cCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCCHHHHHHH
Q 003868 466 CGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD-RITFLTVLSACNHAGLVKEGRRY 541 (790)
Q Consensus 466 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 541 (790)
.|++++|.+.|+++.+ .+...|..+...+...|++++|+..|+++.+. .|+ ...+..+...+...|++++|...
T Consensus 323 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999998753 35678999999999999999999999999985 455 45888888999999999999999
Q ss_pred HHHcccCC----CCCCChhHHHHHHHHHHhc----------CChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHH
Q 003868 542 FETMHGPY----GIPPGEDHYARFIDLLCRA----------GKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIHGNIDL 605 (790)
Q Consensus 542 ~~~~~~~~----~~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~ 605 (790)
|+.+.+.. ........+..+...|.+. |++++|...+++. ... .+..+|..+...+...|++++
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 99886531 1111222344556778888 9999999999986 223 467889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcchH
Q 003868 606 GIQAAEQLFQLMPHHAGTYV 625 (790)
Q Consensus 606 a~~~~~~~~~~~p~~~~~~~ 625 (790)
|...+++++++.|.++....
T Consensus 481 A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 481 AIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHH
Confidence 99999999999998865543
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=1e-15 Score=176.47 Aligned_cols=392 Identities=12% Similarity=0.144 Sum_probs=294.0
Q ss_pred hHHHHHHHhCC--CCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCC-C-----CeeeHHHHHHHHHhCCChh
Q 003868 171 QMHCTVVKSGT--GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE-R-----DELSWTTMMTGYVKNDYLD 242 (790)
Q Consensus 171 ~~~~~~~~~g~--~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~~~ 242 (790)
++.++.....+ ..++.--...+..|... |.+.+|.++++++.- + +....+.++....+. +..
T Consensus 969 ~Lidqv~a~aL~e~~~PeeVs~~vKaf~~a---------glp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~ 1038 (1630)
T 1xi4_A 969 PLIDQVVQTALSETQDPEEVSVTVKAFMTA---------DLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRT 1038 (1630)
T ss_pred HHHHHHHHhhcccccCHHHhHHHHHHHHhC---------CCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-Chh
Confidence 34444433332 23333345566677766 888888888877652 1 234556666666666 445
Q ss_pred HHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChh
Q 003868 243 AAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322 (790)
Q Consensus 243 ~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 322 (790)
+..+...+. +......+...|...|.+++|..+|+.... ...
T Consensus 1039 Rv~eyI~kL-----------------------------d~~d~~eIA~Iai~lglyEEAf~IYkKa~~---------~~~ 1080 (1630)
T 1xi4_A 1039 RVMEYINRL-----------------------------DNYDAPDIANIAISNELFEEAFAIFRKFDV---------NTS 1080 (1630)
T ss_pred hHHHHHHHh-----------------------------hhccHHHHHHHHHhCCCHHHHHHHHHHcCC---------HHH
Confidence 555555543 122234466778889999999999987532 122
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHH
Q 003868 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG 402 (790)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 402 (790)
..+.+ +-..|++++|.++.++.. +..+|..+..++.+.|++++|...|.+. .|...|..++..+.+.|++++|
T Consensus 1081 A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEA 1153 (1630)
T 1xi4_A 1081 AVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEEL 1153 (1630)
T ss_pred HHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHH
Confidence 22333 337889999999999875 4668999999999999999999999774 7888999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 003868 403 LKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482 (790)
Q Consensus 403 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 482 (790)
++.|...++.. ++....+.+..+|++.++++....+. + .++...+..+.+.|...|++++|...|...
T Consensus 1154 IeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--- 1221 (1630)
T 1xi4_A 1154 VKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 1221 (1630)
T ss_pred HHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---
Confidence 99999877654 33333445888999999888644442 2 345566777999999999999999999985
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHH
Q 003868 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562 (790)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 562 (790)
..|..+...|.+.|++++|.+.+++. -+..+|..+-.+|...|++..|...... +..+.+.+..++
T Consensus 1222 --~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli 1287 (1630)
T 1xi4_A 1222 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELI 1287 (1630)
T ss_pred --hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHH
Confidence 48999999999999999999999876 3558899999999999999999887664 334677788999
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhcCC-----CCCcchHhhHHHHHh
Q 003868 563 DLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIH--GNIDLGIQAAEQLFQLMP-----HHAGTYVLLSNMYAN 633 (790)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~ 633 (790)
..|.+.|.+++|+.+++.. +.+| ....|.-|...+.+. ++..++.+.|..-..+.| .+...|.-+..+|.+
T Consensus 1288 ~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~ 1367 (1630)
T 1xi4_A 1288 NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK 1367 (1630)
T ss_pred HHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999775 5554 334676666666554 567777888887766666 677889999999999
Q ss_pred cCChhHHHHH
Q 003868 634 LGRWDDAARV 643 (790)
Q Consensus 634 ~g~~~~a~~~ 643 (790)
.|+|+.|...
T Consensus 1368 ~~e~dnA~~t 1377 (1630)
T 1xi4_A 1368 YEEYDNAIIT 1377 (1630)
T ss_pred cccHHHHHHH
Confidence 9999999853
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=4.6e-17 Score=171.94 Aligned_cols=300 Identities=12% Similarity=0.074 Sum_probs=199.5
Q ss_pred hhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHHH
Q 003868 321 LPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNAILSAYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGLA 394 (790)
Q Consensus 321 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~ 394 (790)
+..+..+...+.+.|++++|...|+.+.+ .+..+|..+...+...|++++|...|+++.+. +...|..+...|.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 45566677777777777777777776643 34556777777777777777777777766542 3456677777777
Q ss_pred hcCChHHHHHHHHHHHHcCCCC---C-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 003868 395 QNGYGEEGLKLFSQMRLEGFKP---C-DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470 (790)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~g~~p---~-~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 470 (790)
..|++++|+..|++.... .| + ...+..+.... . ...+..+...|...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCHH
Confidence 777777777777776653 33 2 22222221000 0 001122345666667777
Q ss_pred HHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHcc
Q 003868 471 AANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP-DRITFLTVLSACNHAGLVKEGRRYFETMH 546 (790)
Q Consensus 471 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 546 (790)
+|.+.|+++.+ .+...|..+...+...|++++|+..++++.+. .| +..++..+...+...|++++|...|+.+.
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77766665532 35566666777777777777777777777663 34 33566666677777777777777777766
Q ss_pred cCCCCCCChhHHH------------HHHHHHHhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHhCCHHHHHH
Q 003868 547 GPYGIPPGEDHYA------------RFIDLLCRAGKFSEAKDVIDSL-PFKPS-A----PIWEALLAGCRIHGNIDLGIQ 608 (790)
Q Consensus 547 ~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~ 608 (790)
+. .+.+...+. .+...+.+.|++++|.+.+++. ...|+ . ..+..+...+...|++++|..
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 42 122222222 2366688899999999888875 22333 3 234557778889999999999
Q ss_pred HHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 609 AAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 609 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.++++++..|+++.++..++.+|...|++++|.+.+++..+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999875
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=3.5e-17 Score=172.86 Aligned_cols=321 Identities=11% Similarity=0.034 Sum_probs=237.3
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHHH
Q 003868 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNA 357 (790)
Q Consensus 281 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~ 357 (790)
|...+..+...+...|++++|...+..+++ ..+ .+..++..+...|...|++++|...|+...+ .+...|..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 76 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVD----GDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQ 76 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 345677888889999999999999999997 433 3678999999999999999999999998764 36678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHhccCCh------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 003868 358 ILSAYVSAGLIDEAKSLFEAMRERNL------LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431 (790)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~m~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 431 (790)
+...|...|++++|...|+++.+.++ ..+..+...+. ...+..+...+...
T Consensus 77 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 77 RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDG 133 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHc
Confidence 99999999999999999999977544 23333311100 01122233445555
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHH
Q 003868 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYE 508 (790)
Q Consensus 432 g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 508 (790)
|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|...|+
T Consensus 134 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666655543 33455666677777777777777777766543 356677778888888888888888888
Q ss_pred HHHHcCCCCChhh-HH------------HHHHHHHccCCHHHHHHHHHHcccCCCCCCCh----hHHHHHHHHHHhcCCh
Q 003868 509 QMLKEGILPDRIT-FL------------TVLSACNHAGLVKEGRRYFETMHGPYGIPPGE----DHYARFIDLLCRAGKF 571 (790)
Q Consensus 509 ~m~~~g~~p~~~t-~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~ 571 (790)
+..+ ..|+... +. .+...+...|++++|...++.+.+.. +.+. ..+..+...+.+.|++
T Consensus 213 ~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 213 ECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCH
Confidence 8877 3455432 22 23556788899999999999887631 2222 3355678889999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhc
Q 003868 572 SEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL 634 (790)
Q Consensus 572 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 634 (790)
++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..|..++...
T Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9999999876 2334 6788999999999999999999999999999999988888887766543
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=1.4e-13 Score=158.86 Aligned_cols=562 Identities=13% Similarity=0.088 Sum_probs=345.1
Q ss_pred chHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCC---------------CChHHHHHHHHHHhcCC
Q 003868 31 SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ---------------PDIVARTTLIAAYSASD 95 (790)
Q Consensus 31 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---------------~~~~~~~~li~~~~~~g 95 (790)
.+.+...+..|.+.++.-+....-.+...|...=..+.-.++|++... .|+.+....|.+.++.|
T Consensus 660 ~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~~s~d~~vhfkyi~aa~~~~ 739 (1630)
T 1xi4_A 660 VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTG 739 (1630)
T ss_pred HHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhccccCChHHHHHHHHHHHHhC
Confidence 455566666666555443333333333333333334444445544431 57777888999999999
Q ss_pred ChHHHHHHHhhCCC------------C-CCCc----------------ch------HHHHHHHHHhCCCchHHHHHHHHh
Q 003868 96 NVKLAREMFNKTPL------------K-MRDT----------------VF------YNAMITAYSHNSNGHAAIELFRDM 140 (790)
Q Consensus 96 ~~~~A~~~~~~~~~------------~-~~~~----------------~~------~n~li~~~~~~g~~~~A~~~~~~m 140 (790)
++.+..++.++-.- . -+|. +. ....|.+|++.-++..+-.+...+
T Consensus 740 q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~l 819 (1630)
T 1xi4_A 740 QIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGL 819 (1630)
T ss_pred CchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhh
Confidence 87777766654221 0 0111 00 123455555555555555554444
Q ss_pred hhCCCCCChhhHHHHHHHHhc-------------chh-hhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCC
Q 003868 141 RRDDVKPDNFTFTSVLSALAL-------------IVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206 (790)
Q Consensus 141 ~~~g~~p~~~t~~~ll~~~~~-------------~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~ 206 (790)
..-. -+......||.+... ..+ .... ...+..+..| ..++.++|+|...|....
T Consensus 820 ld~d--~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~--p~LE~~~~~g-~~~~~~hnalakiyid~n------- 887 (1630)
T 1xi4_A 820 LDVD--CSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLL--PWLEARIHEG-CEEPATHNALAKIYIDSN------- 887 (1630)
T ss_pred hcCC--CCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH--HHHHHHHhCC-CCCHHHHHHHHHHHhccC-------
Confidence 4322 223333333333311 111 1111 2233344444 468889999999998762
Q ss_pred CCCHHHHHH---------HHccCCCCCee----------eHHHHHHHHHhCCChhH-HHHHHHhcccCCcchhhHHHHhh
Q 003868 207 RSLMGAARR---------VFDEMPERDEL----------SWTTMMTGYVKNDYLDA-AREFLDGMSENVGVAWNALISGY 266 (790)
Q Consensus 207 ~g~~~~A~~---------~f~~~~~~~~~----------~~~~li~~~~~~g~~~~-A~~l~~~m~~~~~~~~~~li~~~ 266 (790)
++.+.-++ +=+-..++|+. .-..||...-+++.+.. |.-+.++ +|..-|+.++..-
T Consensus 888 -~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r---~d~~lW~~vl~~~ 963 (1630)
T 1xi4_A 888 -NNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRR---KDPELWGSVLLES 963 (1630)
T ss_pred -CCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHh---cCHHHHHHHhcCC
Confidence 22222110 00000112222 13345555555555543 3334343 3555566665321
Q ss_pred hhhHHHHHH----hC--ccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHH-------
Q 003868 267 VHRELKMLM----LR--IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK------- 333 (790)
Q Consensus 267 ~~~~~~m~~----~~--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~------- 333 (790)
-.....+.+ .. -.-|+.-.+...++|...|...++.++++.++... ..+..+....+.|+.+..+
T Consensus 964 n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~--s~fs~n~~LqnlLi~tAIkaD~~Rv~ 1041 (1630)
T 1xi4_A 964 NPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDN--SVFSEHRNLQNLLILTAIKADRTRVM 1041 (1630)
T ss_pred cHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCC--CcccccHHHHHHHHHHHHHhChhhHH
Confidence 111111111 11 12244445677888889999999999999998521 1122344555656554444
Q ss_pred --------------------CCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHH
Q 003868 334 --------------------CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393 (790)
Q Consensus 334 --------------------~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 393 (790)
.|.+++|..+|++... .....+.++. ..+++++|.++.++. .+..+|..+..++
T Consensus 1042 eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aerv--n~p~vWsqLAKAq 1115 (1630)
T 1xi4_A 1042 EYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERC--NEPAVWSQLAKAQ 1115 (1630)
T ss_pred HHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhc--CCHHHHHHHHHHH
Confidence 4455555555555431 1111122211 445555555555544 3466888999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 003868 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473 (790)
Q Consensus 394 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 473 (790)
.+.|++++|++.|.+. -|...|..++.+|.+.|+++++.+.+...++.. ++..+.+.++.+|++.+++++..
T Consensus 1116 l~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele 1187 (1630)
T 1xi4_A 1116 LQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELE 1187 (1630)
T ss_pred HhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHH
Confidence 9999999999998653 466778888999999999999999998887764 44444556888999998888644
Q ss_pred HHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCC
Q 003868 474 CVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553 (790)
Q Consensus 474 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 553 (790)
... ..++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++..
T Consensus 1188 ~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------- 1248 (1630)
T 1xi4_A 1188 EFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------- 1248 (1630)
T ss_pred HHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------
Confidence 443 3456677778888889999999999999884 378889999999999999999988763
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHh
Q 003868 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN 633 (790)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 633 (790)
+..+|..+..++...|++..|....... ..++..+..++..|...|.+++|+.++++.++++|.+...|..|+.+|++
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh
Confidence 4578888888888899999998877653 34555667888999999999999999999999999999999888888876
Q ss_pred c--CChhHHHHHHH
Q 003868 634 L--GRWDDAARVRK 645 (790)
Q Consensus 634 ~--g~~~~a~~~~~ 645 (790)
- ++..++.++|.
T Consensus 1327 y~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1327 FKPQKMREHLELFW 1340 (1630)
T ss_pred CCHHHHHHHHHHHH
Confidence 4 45556666555
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=1e-16 Score=166.65 Aligned_cols=283 Identities=13% Similarity=0.117 Sum_probs=111.0
Q ss_pred CCHHHHHHHHccCCCCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHH
Q 003868 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTS 287 (790)
Q Consensus 208 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ 287 (790)
|++++|..++++++.|+ +|..|..++.+.|++++|++.|.+. +|..+|..
T Consensus 17 ~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika----------------------------~D~~~y~~ 66 (449)
T 1b89_A 17 GNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA----------------------------DDPSSYME 66 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC----------------------------CCHHHHHH
Confidence 89999999999997664 9999999999999999999999754 67889999
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCC
Q 003868 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367 (790)
Q Consensus 288 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 367 (790)
++.++...|++++|...+....+ . .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|+
T Consensus 67 V~~~ae~~g~~EeAi~yl~~ark----~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~ 137 (449)
T 1b89_A 67 VVQAANTSGNWEELVKYLQMARK----K--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKM 137 (449)
T ss_dssp ------------------------------------------------CHHHHTTTTTC---C----------------C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH----h--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCC
Confidence 99999999999999998877765 2 33467899999999999999999988864 777899999999999999
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 003868 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447 (790)
Q Consensus 368 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~ 447 (790)
+++|...|..+ ..|..++.++.+.|++++|.+.++++ .+..||..++.+|...|+++.|......
T Consensus 138 yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~---- 202 (449)
T 1b89_A 138 YDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH---- 202 (449)
T ss_dssp TTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT----
T ss_pred HHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH----
Confidence 99998888877 47888888888888888888888877 2667777777777777777777332221
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHH
Q 003868 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVL 526 (790)
Q Consensus 448 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 526 (790)
+.. ++.-...++..|.+.|++++|+.+++.... ..+-. ..|+.+.
T Consensus 203 -L~~-------------------------------~ad~l~~lv~~Yek~G~~eEai~lLe~aL~--le~ah~~~ftel~ 248 (449)
T 1b89_A 203 -IVV-------------------------------HADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELA 248 (449)
T ss_dssp -TTT-------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--STTCCHHHHHHHH
T ss_pred -HHh-------------------------------CHhhHHHHHHHHHHCCCHHHHHHHHHHHhC--CcHHHHHHHHHHH
Confidence 111 111122355556666666666666666554 23322 2333333
Q ss_pred HHHH--ccCCHHHHHHHHHHcccCCCCCC------ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 003868 527 SACN--HAGLVKEGRRYFETMHGPYGIPP------GEDHYARFIDLLCRAGKFSEAKDVIDSL 581 (790)
Q Consensus 527 ~a~~--~~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~~ 581 (790)
-+++ +.+++.+..+.|..-. +++| +..+|.-++-.|..-++++.|...+-+-
T Consensus 249 il~~ky~p~k~~ehl~~~~~~i---ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 249 ILYSKFKPQKMREHLELFWSRV---NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHSTTS---CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhcCHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 3333 3344444444443222 4444 4567788888888888888887766554
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=5.7e-17 Score=172.19 Aligned_cols=293 Identities=11% Similarity=-0.007 Sum_probs=186.6
Q ss_pred HHCCCHHHHHH-HHhhCCC-----C--ChhHHHHHHHHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCChH
Q 003868 332 WKCGKVNEARD-IFNQMPE-----R--DLVSWNAILSAYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGLAQNGYGE 400 (790)
Q Consensus 332 ~~~g~~~~A~~-~f~~m~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~ 400 (790)
...|++++|.. .|++... | +...|..+...+.+.|++++|...|+++.+. +..+|..+...|.+.|+++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 33455555555 5554332 1 2334555555566666655555555555432 2345555555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 003868 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480 (790)
Q Consensus 401 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 480 (790)
+|+..|+++.... +.+..++..+...+...|++++|...+..+.+.... +...+..+... .. ..
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~~ 179 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------GA 179 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-----------------------
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------hh
Confidence 5555555555442 224444555555555555555555555555543211 11111000000 00 00
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhH
Q 003868 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD---RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557 (790)
Q Consensus 481 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 557 (790)
. ....+.. +..+...|++++|+..|+++.+. .|+ ..++..+...+...|++++|..+|+.+.+. .+.+...
T Consensus 180 ~-~~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~ 253 (368)
T 1fch_A 180 G-LGPSKRI-LGSLLSDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLL 253 (368)
T ss_dssp -------CT-THHHHHHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred c-ccHHHHH-HHHHhhcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHH
Confidence 0 0011112 23333889999999999999984 555 578888999999999999999999998863 3445788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-----------Ccch
Q 003868 558 YARFIDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH-----------AGTY 624 (790)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~ 624 (790)
+..+...+.+.|++++|.+.++++ ... .+..+|..+...+...|++++|...+++++++.|++ ..+|
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 333 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW 333 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHH
Confidence 999999999999999999999886 333 467889999999999999999999999999998887 7889
Q ss_pred HhhHHHHHhcCChhHHHHHHHH
Q 003868 625 VLLSNMYANLGRWDDAARVRKL 646 (790)
Q Consensus 625 ~~l~~~~~~~g~~~~a~~~~~~ 646 (790)
..++.+|...|++++|..++++
T Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 334 STLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHhCChHhHHHhHHH
Confidence 9999999999999999998774
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.74 E-value=3.5e-16 Score=163.10 Aligned_cols=283 Identities=13% Similarity=0.043 Sum_probs=160.7
Q ss_pred ChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 003868 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396 (790)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 396 (790)
+..++..+...+...|++++|.++|+++.+ .+...+..++..+.+.|++++|...++
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~-------------------- 80 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSH-------------------- 80 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHH--------------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHH--------------------
Confidence 444455555555555555555555555432 123334444445555555444444444
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 003868 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG-ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475 (790)
Q Consensus 397 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 475 (790)
++.... +.+...+..+...+...| ++++|.+.+..+.+.. +.+...+..+...|...|++++|.+.
T Consensus 81 -----------~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 147 (330)
T 3hym_B 81 -----------KLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAA 147 (330)
T ss_dssp -----------HHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHH
T ss_pred -----------HHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHH
Confidence 444321 112333334444444444 4444444444444332 22334445555555555555555555
Q ss_pred HhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHcccCC--
Q 003868 476 FNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD-RITFLTVLSACNHAGLVKEGRRYFETMHGPY-- 549 (790)
Q Consensus 476 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-- 549 (790)
|+++.+ .+...|..+...|...|++++|++.|++..+. .|+ ...+..+...+...|++++|..+++.+.+..
T Consensus 148 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 225 (330)
T 3hym_B 148 YFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225 (330)
T ss_dssp HHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh
Confidence 554432 23344555666666666666666666666652 333 3455666666666666666666666654321
Q ss_pred -----CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc
Q 003868 550 -----GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PF-KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622 (790)
Q Consensus 550 -----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 622 (790)
..+.....+..+...|.+.|++++|.+.+++. .. +.+..+|..+...+...|++++|...+++++++.|+++.
T Consensus 226 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 305 (330)
T 3hym_B 226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305 (330)
T ss_dssp TSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHH
T ss_pred ccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchH
Confidence 11334567777777888888888888777765 22 235567788888888888888888888888888888888
Q ss_pred chHhhHHHH-HhcCCh
Q 003868 623 TYVLLSNMY-ANLGRW 637 (790)
Q Consensus 623 ~~~~l~~~~-~~~g~~ 637 (790)
.+..++.++ ...|+.
T Consensus 306 ~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 306 SVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHhCch
Confidence 888888877 444543
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.74 E-value=5.5e-16 Score=161.62 Aligned_cols=262 Identities=15% Similarity=0.092 Sum_probs=224.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 003868 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALIT 461 (790)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 461 (790)
+...+..++..+...|++++|+.+|+++.... +.+...+..++..+...|++++|..++..+.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 44556666667777777999999999888764 3344566677788899999999999999999874 456788899999
Q ss_pred HHHhcC-CHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCCHH
Q 003868 462 MYARCG-VVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD-RITFLTVLSACNHAGLVK 536 (790)
Q Consensus 462 ~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 536 (790)
.|...| ++++|.+.|+++.+ .+...|..+...+...|++++|+..|+++.+. .|+ ...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhhHH
Confidence 999999 99999999998754 35778999999999999999999999999984 454 467777889999999999
Q ss_pred HHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHHhCCHHH
Q 003868 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP-----------FKPSAPIWEALLAGCRIHGNIDL 605 (790)
Q Consensus 537 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~p~~~~~~~ll~~~~~~g~~~~ 605 (790)
+|..+++.+.+. .+.+...+..+...+.+.|++++|.+.+++.- ...+..+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999863 45567889999999999999999999998751 13345789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 606 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
|+..++++++..|+++..+..++.+|...|++++|.+.+++..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999998754
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=9.7e-18 Score=174.27 Aligned_cols=282 Identities=14% Similarity=0.153 Sum_probs=135.5
Q ss_pred HHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003868 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411 (790)
Q Consensus 332 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (790)
-+.|++++|.++++++..|+ +|+.++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..++..++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 36788999999999996654 8999999999999999999999764 5677899999999999999999997776665
Q ss_pred cCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHH
Q 003868 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491 (790)
Q Consensus 412 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li 491 (790)
. .++..+.+.++.+|.+.|+++++.++++ .|+..+++.+.+.|...|.+++|...|..+ ..|..++
T Consensus 90 ~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA 155 (449)
T 1b89_A 90 K--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 155 (449)
T ss_dssp ---------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHH
T ss_pred h--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHH
Confidence 3 4557788889999999999999887774 366679999999999999999999999987 4789999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCCh
Q 003868 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571 (790)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 571 (790)
.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|...... +...+.....++..|.+.|++
T Consensus 156 ~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHHCCCH
Confidence 9999999999999999988 2678999999999999999999655443 223455566788999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhcCC-----CCCcchHhhHHHHHhcCChhHHHH
Q 003868 572 SEAKDVIDSL-PFKP-SAPIWEALLAGCRIH--GNIDLGIQAAEQLFQLMP-----HHAGTYVLLSNMYANLGRWDDAAR 642 (790)
Q Consensus 572 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 642 (790)
++|..+++.. +.++ ...+|.-|.-++.+. ++..+.++.|..-+.+.| .++..|.-+..+|.+-++|+.|..
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 9999988874 5544 456777777777655 566666666666556666 678899999999999999998886
Q ss_pred H
Q 003868 643 V 643 (790)
Q Consensus 643 ~ 643 (790)
.
T Consensus 304 t 304 (449)
T 1b89_A 304 T 304 (449)
T ss_dssp H
T ss_pred H
Confidence 4
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.71 E-value=3.7e-14 Score=156.84 Aligned_cols=366 Identities=10% Similarity=-0.033 Sum_probs=299.7
Q ss_pred CCeeeHHHHHHHHHh----CCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHc----
Q 003868 223 RDELSWTTMMTGYVK----NDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACAN---- 294 (790)
Q Consensus 223 ~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~---- 294 (790)
.+..++..+-..|.. .+++++|+..|++. ... -+...+..+-..+..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a----------------------~~~---~~~~a~~~Lg~~y~~g~g~ 91 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRA----------------------AEQ---GYTPAEYVLGLRYMNGEGV 91 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH----------------------HHT---TCHHHHHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH----------------------HHC---CCHHHHHHHHHHHHcCCCC
Confidence 366677777777777 89999999999976 333 245566667777777
Q ss_pred cCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHH----CCCHHHHHHHHhhCCC-CChhHHHHHHHHHHH----c
Q 003868 295 SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK----CGKVNEARDIFNQMPE-RDLVSWNAILSAYVS----A 365 (790)
Q Consensus 295 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~ 365 (790)
.++.++|.+.+..... .+ +...+..|..+|.. .+++++|.+.|+...+ .+..++..+...|.. .
T Consensus 92 ~~~~~~A~~~~~~a~~----~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAAL----KG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp CCCHHHHHHHHHHHHH----TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred CCCHHHHHHHHHHHHH----CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 8899999999999987 54 56778889999998 8899999999998765 467788888888888 8
Q ss_pred CCHHHHHHHHHHhccC-ChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCChHH
Q 003868 366 GLIDEAKSLFEAMRER-NLLSWTVMISGLAQ----NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG----LGALEN 436 (790)
Q Consensus 366 g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~ 436 (790)
++.++|.+.|++..+. +..++..+...|.. .++.++|+..|++..+.| +...+..+...+.. .+++++
T Consensus 165 ~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~ 241 (490)
T 2xm6_A 165 RDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQ 241 (490)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 8999999999988764 56788999999988 899999999999998865 45566667777765 789999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CCHhHHHHHHHHHHhc-----CChHHHHHH
Q 003868 437 GRQLHAQLVHSGYDSSLSAGNALITMYAR----CGVVEAANCVFNTMPN-VDSVSWNAMIAALGQH-----GNGARAIEL 506 (790)
Q Consensus 437 a~~i~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~ 506 (790)
|...+....+.+ +...+..|..+|.. .++.++|.+.|++..+ .+...+..+...|... ++.++|+..
T Consensus 242 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~ 318 (490)
T 2xm6_A 242 SRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISW 318 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 999999998875 45677788888888 8999999999998765 4677888888888887 899999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHccC---CHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHh----cCChHHHHHHHH
Q 003868 507 YEQMLKEGILPDRITFLTVLSACNHAG---LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR----AGKFSEAKDVID 579 (790)
Q Consensus 507 ~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~ 579 (790)
|++..+.| +...+..+...+...| +.++|.++|++..+. .+...+..|..+|.. .+++++|.+.|+
T Consensus 319 ~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 391 (490)
T 2xm6_A 319 YTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMR 391 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99999865 4456677777777656 889999999998874 367788889999988 899999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCC---CCcchHhhHHHHHh
Q 003868 580 SLPFKPSAPIWEALLAGCRI----HGNIDLGIQAAEQLFQLMPH---HAGTYVLLSNMYAN 633 (790)
Q Consensus 580 ~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 633 (790)
+.-...+...+..|...|.. .++.++|...++++.+..|+ ++.....|+.++..
T Consensus 392 ~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 392 KAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 87334567888899998888 89999999999999999854 76777777776654
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.70 E-value=8.4e-14 Score=153.92 Aligned_cols=350 Identities=10% Similarity=-0.021 Sum_probs=295.7
Q ss_pred ChhhHHHHHHHHHc----cCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHH----CCCHHHHHHHHhhCCC-CC
Q 003868 281 DEFTYTSVISACAN----SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK----CGKVNEARDIFNQMPE-RD 351 (790)
Q Consensus 281 ~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~-~~ 351 (790)
+...+..+-..+.. .++++.|...+....+ .+ +...+..|..+|.. .++.++|.+.|++..+ .+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~----~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE----QG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGL 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH----CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 55666666666766 7899999999999987 43 56788889999999 9999999999998765 46
Q ss_pred hhHHHHHHHHHHH----cCCHHHHHHHHHHhccC-ChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003868 352 LVSWNAILSAYVS----AGLIDEAKSLFEAMRER-NLLSWTVMISGLAQ----NGYGEEGLKLFSQMRLEGFKPCDYAFA 422 (790)
Q Consensus 352 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 422 (790)
..++..|...|.. .+++++|.+.|++..+. +..++..+...|.. .++.++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 7788888888988 89999999999998875 56788889999987 889999999999998865 566777
Q ss_pred HHHHHHHc----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CCHhHHHHHHHH
Q 003868 423 GAITSCAG----LGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR----CGVVEAANCVFNTMPN-VDSVSWNAMIAA 493 (790)
Q Consensus 423 ~ll~~~~~----~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~ 493 (790)
.+...+.. .++.++|...+....+.+ +...+..|..+|.. .++.++|.+.|++..+ .+...+..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777 899999999999999875 56778888999987 8899999999998764 567788888888
Q ss_pred HHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc-----CCHHHHHHHHHHcccCCCCCCChhHHHHHHHH
Q 003868 494 LGQ----HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA-----GLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564 (790)
Q Consensus 494 ~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 564 (790)
|.. .++.++|++.|++..+.| +...+..+...+... +++++|..+|+...+. + +...+..|..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence 887 899999999999998764 455667777777776 8999999999998874 3 45677888888
Q ss_pred HHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHh----
Q 003868 565 LCRAG---KFSEAKDVIDSLPFKPSAPIWEALLAGCRI----HGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN---- 633 (790)
Q Consensus 565 ~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 633 (790)
|.+.| ++++|.+.|++.-...+...+..|...|.. .++.++|...++++.+.. ++.++..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 88767 789999999887434678889999999988 899999999999998864 57889999999998
Q ss_pred cCChhHHHHHHHHHHhCCC
Q 003868 634 LGRWDDAARVRKLMRDRGV 652 (790)
Q Consensus 634 ~g~~~~a~~~~~~m~~~g~ 652 (790)
.+++++|.+.+++..+.|.
T Consensus 416 ~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 8999999999999988663
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=2.6e-16 Score=167.05 Aligned_cols=267 Identities=10% Similarity=-0.040 Sum_probs=171.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhcc---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003868 353 VSWNAILSAYVSAGLIDEAKSLFEAMRE---RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429 (790)
Q Consensus 353 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 429 (790)
..|..+...+.+.|++++|...|+++.+ .+..+|..+...|.+.|++++|+..|+++.... +.+..++..+...+.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455555555555555555555555543 233445555555555555555555555554432 222334444444444
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 003868 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509 (790)
Q Consensus 430 ~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 509 (790)
..|++++|...+..+.+.... +...+..+. .....+..+...+...|++++|+..|++
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPK-YKYLVKNKK---------------------GSPGLTRRMSKSPVDSSVLEGVKELYLE 202 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHH-HHCC----------------------------------------CCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcc-chHHHhhhc---------------------cchHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 444444444444444432100 000000000 0123344567788889999999999999
Q ss_pred HHHcCCCC---ChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 003868 510 MLKEGILP---DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP 585 (790)
Q Consensus 510 m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 585 (790)
+.+. .| +..++..+...+...|++++|..+|+.+.+. .+.+...|..+...|.+.|++++|.+.++++ ...|
T Consensus 203 al~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 278 (365)
T 4eqf_A 203 AAHQ--NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278 (365)
T ss_dssp HHHH--SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHh--CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 9884 45 4678888889999999999999999998863 3456788999999999999999999999886 3344
Q ss_pred -CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------------CCcchHhhHHHHHhcCChhHHHHHHHH
Q 003868 586 -SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH------------HAGTYVLLSNMYANLGRWDDAARVRKL 646 (790)
Q Consensus 586 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 646 (790)
+..+|..+...|...|++++|...+++++++.|+ +...+..|+.++...|+.+.+.++.++
T Consensus 279 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 279 GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 5788999999999999999999999999998776 357789999999999999998887664
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=1.3e-14 Score=147.92 Aligned_cols=270 Identities=10% Similarity=-0.063 Sum_probs=204.6
Q ss_pred HHHHcCCHHHHHHHHHHhccCCh----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHH
Q 003868 361 AYVSAGLIDEAKSLFEAMRERNL----LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436 (790)
Q Consensus 361 ~~~~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 436 (790)
-....|++.+|+..+++....++ .....+..+|...|++++|+..++. .-+|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34455666666666666554332 2334456667777777777776543 135566677777778888888888
Q ss_pred HHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003868 437 GRQLHAQLVHSGY-DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI 515 (790)
Q Consensus 437 a~~i~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 515 (790)
|.+.++.+...+. +.+...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 8888888877764 44566777888999999999999999998 567889999999999999999999999999985
Q ss_pred CCChhhH---HHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 003868 516 LPDRITF---LTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIW 590 (790)
Q Consensus 516 ~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 590 (790)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|++.+++. ...| +..+|
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 5775422 12233344568999999999999874 5667889999999999999999999999985 3344 67789
Q ss_pred HHHHHHHHHhCCHHH-HHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHH
Q 003868 591 EALLAGCRIHGNIDL-GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVR 644 (790)
Q Consensus 591 ~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 644 (790)
..++..+...|+.++ +.++++++++++|+++.+ .+...+.+.++++..-|
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHc
Confidence 999999999999865 678999999999999654 34566666666665433
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=6.3e-14 Score=156.64 Aligned_cols=389 Identities=10% Similarity=0.043 Sum_probs=285.6
Q ss_pred CeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccC-ChhhHHHHHHHHHccCChHHHH
Q 003868 224 DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQL-DEFTYTSVISACANSGLFRLGK 302 (790)
Q Consensus 224 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~ 302 (790)
|...|..++. +.+.|++++|..+|+++. ...| +...|...+..+.+.|+.+.|.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al------------------------~~~P~~~~~w~~~~~~~~~~~~~~~a~ 66 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLV------------------------AQFPSSGRFWKLYIEAEIKAKNYDKVE 66 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHH------------------------TTCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHH------------------------HHCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 6778999998 588999999999999872 3335 5567888999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCChhHHHHHHHH-HHHCCCHHHHHH----HHhhCC-----C-CChhHHHHHHHHHHH-------
Q 003868 303 QVHAYLLRTEAKPTPEFSLPVNNALVTL-YWKCGKVNEARD----IFNQMP-----E-RDLVSWNAILSAYVS------- 364 (790)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~----~f~~m~-----~-~~~~~~~~li~~~~~------- 364 (790)
.+++.++. .. |++..|..++.. ....|+++.|.+ +|+... . ++...|...+....+
T Consensus 67 ~~~~ral~----~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~ 140 (530)
T 2ooe_A 67 KLFQRCLM----KV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSY 140 (530)
T ss_dssp HHHHHHTT----TC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSST
T ss_pred HHHHHHHh----cC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccH
Confidence 99999987 43 366677777753 345677776655 666542 1 356678888776655
Q ss_pred --cCCHHHHHHHHHHhccC-Ch---hHHHHHHHHH-------------HhcCChHHHHHHHHHHH------HcC---CCC
Q 003868 365 --AGLIDEAKSLFEAMRER-NL---LSWTVMISGL-------------AQNGYGEEGLKLFSQMR------LEG---FKP 416 (790)
Q Consensus 365 --~g~~~~A~~~~~~m~~~-~~---~~~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~p 416 (790)
.|++++|..+|++..+. .. ..|....... .+.+++..|..++.+.. +.. ++|
T Consensus 141 ~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 141 AENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred HHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 78899999999998762 11 2333222211 12455677777776632 111 344
Q ss_pred CH--------HHHHHHHHHHHc----cCCh----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH---
Q 003868 417 CD--------YAFAGAITSCAG----LGAL----ENGRQLHAQLVHSGYDSSLSAGNALITMYAR-------CGVVE--- 470 (790)
Q Consensus 417 ~~--------~t~~~ll~~~~~----~g~~----~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~~--- 470 (790)
+. ..|...+..... .++. +.+..++++++.. .+.+..+|..++..+.+ .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 42 233333322221 1232 3677788888876 35567888888888876 79987
Q ss_pred ----HHHHHHhcCCC---C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHccCCHHHHHH
Q 003868 471 ----AANCVFNTMPN---V-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR--ITFLTVLSACNHAGLVKEGRR 540 (790)
Q Consensus 471 ----~A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~ 540 (790)
+|..+|++..+ | +...|..++..+.+.|++++|..+|+++.+ +.|+. ..|...+..+.+.|++++|.+
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 89999998763 3 578899999999999999999999999998 57764 378888888888999999999
Q ss_pred HHHHcccCCCCCCC-hhHHHHHHHH-HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 003868 541 YFETMHGPYGIPPG-EDHYARFIDL-LCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616 (790)
Q Consensus 541 ~~~~~~~~~~~~p~-~~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 616 (790)
+|+...+. +|. ...|...+.. +...|+.++|.++|++. ...| +...|..++..+...|+.+.|..+++++++.
T Consensus 378 ~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 378 IFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 99999863 333 3333332222 34689999999999875 2234 6789999999999999999999999999998
Q ss_pred CCCCCc----chHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 617 MPHHAG----TYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 617 ~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.|.++. .|...+......|+.+.+.++.+++.+
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 877665 666777888889999999999998875
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=6.8e-14 Score=156.36 Aligned_cols=396 Identities=11% Similarity=0.099 Sum_probs=288.8
Q ss_pred CchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCC--C-CeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchh
Q 003868 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE--R-DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259 (790)
Q Consensus 183 ~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~ 259 (790)
-+...|..++.. .+. |+++.|+.+|+++.+ | +...|..++..+.+.|++++|..+|++.
T Consensus 11 ~~~~~w~~l~~~-~~~---------~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ra-------- 72 (530)
T 2ooe_A 11 YDLDAWSILIRE-AQN---------QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRC-------- 72 (530)
T ss_dssp TCHHHHHHHHHH-HHS---------SCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------
T ss_pred CCHHHHHHHHHH-HHh---------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--------
Confidence 355677777773 556 999999999998864 3 6678999999999999999999999976
Q ss_pred hHHHHhhhhhHHHHHHhCccCChhhHHHHHHHH-HccCChHHHHH----HHHHHHHhcCCCCCC-CChhHHHHHHHHHHH
Q 003868 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISAC-ANSGLFRLGKQ----VHAYLLRTEAKPTPE-FSLPVNNALVTLYWK 333 (790)
Q Consensus 260 ~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~-~~~~~~~~a~~----~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~ 333 (790)
....|+...|...+... ...|+.+.|++ +++..+.. .|.. .+..+|...+....+
T Consensus 73 ----------------l~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~---~g~~~~~~~~w~~~~~~~~~ 133 (530)
T 2ooe_A 73 ----------------LMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDK---IGMEIMSYQIWVDYINFLKG 133 (530)
T ss_dssp ----------------TTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHH---TTTSTTCHHHHHHHHHHHHH
T ss_pred ----------------HhcCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHhc
Confidence 33447766666666533 34577776665 67666652 2332 356788888887765
Q ss_pred ---------CCCHHHHHHHHhhCCC-CCh---hHHHHHHHHH-------------HHcCCHHHHHHHHHHh------cc-
Q 003868 334 ---------CGKVNEARDIFNQMPE-RDL---VSWNAILSAY-------------VSAGLIDEAKSLFEAM------RE- 380 (790)
Q Consensus 334 ---------~g~~~~A~~~f~~m~~-~~~---~~~~~li~~~-------------~~~g~~~~A~~~~~~m------~~- 380 (790)
.|+++.|..+|++..+ |+. ..|....... .+.+++++|..++... .+
T Consensus 134 ~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~ 213 (530)
T 2ooe_A 134 VEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDR 213 (530)
T ss_dssp SCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 7899999999999765 321 2343322210 1235567777766652 11
Q ss_pred ------CC--------hhHHHHHHHHHHhc----CCh----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-------c
Q 003868 381 ------RN--------LLSWTVMISGLAQN----GYG----EEGLKLFSQMRLEGFKPCDYAFAGAITSCAG-------L 431 (790)
Q Consensus 381 ------~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~ 431 (790)
++ ...|...+...... ++. .+|+.+|++..... +-+...|......+.+ .
T Consensus 214 ~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~ 292 (530)
T 2ooe_A 214 NAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEK 292 (530)
T ss_dssp SSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhc
Confidence 11 24566655443332 232 37788999888752 3456667666666664 7
Q ss_pred CChH-------HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CH-hHHHHHHHHHHhcCCh
Q 003868 432 GALE-------NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--V-DS-VSWNAMIAALGQHGNG 500 (790)
Q Consensus 432 g~~~-------~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~ 500 (790)
|+++ +|..+++.+++.-.+.+..++..++..+.+.|++++|.++|+++.+ | +. ..|..++..+.+.|+.
T Consensus 293 g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 372 (530)
T 2ooe_A 293 GDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI 372 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCH
Confidence 9987 8999999998743456788999999999999999999999998753 3 33 5899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCh-hhHHHHHHH-HHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 003868 501 ARAIELYEQMLKEGILPDR-ITFLTVLSA-CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVI 578 (790)
Q Consensus 501 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 578 (790)
++|.++|++..+. .|+. ..|...... +...|+.++|..+|+...+. .+.+...|..+++.+.+.|+.++|..+|
T Consensus 373 ~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 373 KSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 9999999999984 4442 333332222 33689999999999998864 3446788999999999999999999999
Q ss_pred HhC----CCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 003868 579 DSL----PFKPS--APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 579 ~~~----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 620 (790)
++. +..|+ ...|...+.....+|+.+.+..+.+++.+..|++
T Consensus 449 ~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 449 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 886 33332 4589999999999999999999999999998853
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=1.4e-14 Score=159.40 Aligned_cols=363 Identities=10% Similarity=-0.028 Sum_probs=199.0
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHhc----CCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--------
Q 003868 282 EFTYTSVISACANSGLFRLGKQVHAYLLRTE----AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE-------- 349 (790)
Q Consensus 282 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-------- 349 (790)
...|+.+-..+...|+.++|.+.+...++.. ..........+|+.+..+|...|++++|...|++..+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 3456667777777777777777777665421 0011122345667777777777777777766665431
Q ss_pred ---CChhHHHHHHHHHHHc--CCHHHHHHHHHHhccC---ChhHHHHHHHH---HHhcCChHHHHHHHHHHHHcCCCCCH
Q 003868 350 ---RDLVSWNAILSAYVSA--GLIDEAKSLFEAMRER---NLLSWTVMISG---LAQNGYGEEGLKLFSQMRLEGFKPCD 418 (790)
Q Consensus 350 ---~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~---~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~ 418 (790)
....+++.+..++... +++++|.+.|++..+. ++..+..+... +...++.++|++.|++..+.. +.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccch
Confidence 1233455444444443 4577777777776542 33444444433 334566677777777766542 2234
Q ss_pred HHHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHH
Q 003868 419 YAFAGAITSCAG----LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMI 491 (790)
Q Consensus 419 ~t~~~ll~~~~~----~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li 491 (790)
..+..+...+.. .+++++|.+.++.+.+.. +.+..++..+...|.+.|++++|...|++..+ .+..+|..+.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 288 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 444444444333 355667777777766653 34556666777777777777777777776543 2455666666
Q ss_pred HHHHhc-------------------CChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCC
Q 003868 492 AALGQH-------------------GNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551 (790)
Q Consensus 492 ~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 551 (790)
..|... +..++|...|++..+. .|+. .++..+...+...|++++|...|++..+.
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~--- 363 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK--- 363 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---
Confidence 555432 2245566666666653 3433 45666677777777777777777776643
Q ss_pred CCChh----HHHHHHH-HHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchH
Q 003868 552 PPGED----HYARFID-LLCRAGKFSEAKDVIDSL-PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYV 625 (790)
Q Consensus 552 ~p~~~----~~~~li~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 625 (790)
.|+.. .+..+.. .+...|++++|++.+++. .+.|+...+... ...+..++++.++.+|+++.+|.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~ 434 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALH 434 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHH
Confidence 22221 1222222 234567777777777654 344544332222 23445566677778899999999
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHhCCCccCCceeE
Q 003868 626 LLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSW 660 (790)
Q Consensus 626 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 660 (790)
.|+.+|...|++++|.+.+++..+.|-......+|
T Consensus 435 ~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 435 VLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 99999999999999999999998765443233334
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.66 E-value=2.1e-15 Score=160.06 Aligned_cols=248 Identities=15% Similarity=0.077 Sum_probs=171.6
Q ss_pred HcCCHHHHHH-HHHHhccC-------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChH
Q 003868 364 SAGLIDEAKS-LFEAMRER-------NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435 (790)
Q Consensus 364 ~~g~~~~A~~-~~~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 435 (790)
..|++++|.. .|++.... +...|..+...+.+.|++++|+..|+++.+..
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---------------------- 94 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD---------------------- 94 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC----------------------
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------
Confidence 3456666665 55544321 12345555556666666666666666555532
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003868 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLK 512 (790)
Q Consensus 436 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 512 (790)
+.+..++..+...|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|++.|+++.+
T Consensus 95 --------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 95 --------------PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp --------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22334444455555555555555555554331 3556777777777788888888888888777
Q ss_pred cCCCCChhhHHH----------------HHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHH
Q 003868 513 EGILPDRITFLT----------------VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576 (790)
Q Consensus 513 ~g~~p~~~t~~~----------------ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 576 (790)
. .|+...... .+..+...|++++|..+|+.+.+.....++...+..+...|.+.|++++|.+
T Consensus 161 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 238 (368)
T 1fch_A 161 Y--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVD 238 (368)
T ss_dssp T--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred h--CcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 3 444432111 2334448899999999999998642222257889999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 577 VIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 577 ~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.++++ ...| +..+|..+...+...|++++|+..++++++..|+++.++..++.+|.+.|++++|.+.++++.+
T Consensus 239 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 239 CFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99886 2334 6789999999999999999999999999999999999999999999999999999999999876
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.65 E-value=4.1e-15 Score=154.75 Aligned_cols=274 Identities=11% Similarity=-0.007 Sum_probs=192.8
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003868 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427 (790)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 427 (790)
+...|..+...+...|++++|..+|+++.+. +..+|..+...+.+.|++++|...|+++.+.. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3345666677777777777777777766542 34566666777777777777777777766642 3345555566666
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHH--HHHhcCChHHHHH
Q 003868 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA--ALGQHGNGARAIE 505 (790)
Q Consensus 428 ~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~ 505 (790)
+...|++++|...+..+.+.... +...+..+.... ++......+.. .+...|++++|+.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------------------------CCTTSHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 66666666666666666654211 111111110000 01111111212 2667788999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 003868 506 LYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFK 584 (790)
Q Consensus 506 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 584 (790)
.++++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|.+.++++ ...
T Consensus 160 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 160 LLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999998842 235568888888999999999999999998763 3446788999999999999999999999886 223
Q ss_pred -CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------------CCcchHhhHHHHHhcCChhHHHHHHHHH
Q 003868 585 -PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH------------HAGTYVLLSNMYANLGRWDDAARVRKLM 647 (790)
Q Consensus 585 -p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 647 (790)
.+..+|..+...+...|++++|...++++++..|+ ++..+..++.+|...|++++|.+++++.
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 36788999999999999999999999999999998 6889999999999999999999988754
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.64 E-value=6.2e-15 Score=156.33 Aligned_cols=221 Identities=13% Similarity=0.062 Sum_probs=161.8
Q ss_pred HHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHH
Q 003868 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGAR 502 (790)
Q Consensus 426 ~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 502 (790)
..+.+.|++++|..+++.+++.. +.+..++..+...|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++
T Consensus 73 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 151 (365)
T 4eqf_A 73 LKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQD 151 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHH
Confidence 33333334444444443333332 23344555566666666666666666665432 356778888888888888888
Q ss_pred HHHHHHHHHHcCCCCChh-----------hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCCh
Q 003868 503 AIELYEQMLKEGILPDRI-----------TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571 (790)
Q Consensus 503 A~~~~~~m~~~g~~p~~~-----------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 571 (790)
|+..|+++.+ ..|+.. .+..+...+...|++++|..+|+++.+.....++...+..+...|.+.|++
T Consensus 152 A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~ 229 (365)
T 4eqf_A 152 ACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEF 229 (365)
T ss_dssp HHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCH
Confidence 8888888887 345432 223457788999999999999999987422222688999999999999999
Q ss_pred HHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 572 SEAKDVIDSL-PF-KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 572 ~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
++|.+.+++. .. +.+..+|..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|.+.++++.+
T Consensus 230 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 230 NRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999986 22 346789999999999999999999999999999999999999999999999999999999999976
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.64 E-value=1.6e-14 Score=147.20 Aligned_cols=245 Identities=10% Similarity=0.034 Sum_probs=200.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 003868 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCD--YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467 (790)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g 467 (790)
|.-....|++..|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+...+..+...|.+.|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3445668999999999887654 34443 3456678899999999999876644 24567788899999999999
Q ss_pred CHHHHHHHHhcCC----CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 003868 468 VVEAANCVFNTMP----NV-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542 (790)
Q Consensus 468 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 542 (790)
+.++|.+.++++. .| +...+..+...+.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999863 24 566777888999999999999999987 355678888999999999999999999
Q ss_pred HHcccCCCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 003868 543 ETMHGPYGIPPGEDH---YARFIDLLCRAGKFSEAKDVIDSL--PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617 (790)
Q Consensus 543 ~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 617 (790)
+.+.+. .|+... ...++..+...|++++|..+|+++ ..+.+...|+.+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999864 355321 123445555669999999999987 234578899999999999999999999999999999
Q ss_pred CCCCcchHhhHHHHHhcCChhH-HHHHHHHHHh
Q 003868 618 PHHAGTYVLLSNMYANLGRWDD-AARVRKLMRD 649 (790)
Q Consensus 618 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~ 649 (790)
|+++.++..++.++...|++++ +.++++++.+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999986 5789888875
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=3.4e-16 Score=175.12 Aligned_cols=151 Identities=15% Similarity=0.163 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 003868 384 LSWTVMISGLAQNGYGEEGLKLFSQMR---LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALI 460 (790)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li 460 (790)
.+||++|++|++.|+.++|.++|++|. ..|+.||.+||+++|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv------ 201 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL------ 201 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH------
Confidence 467777777777777888888887765 34788888888888888888888888888888888888777554
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHH
Q 003868 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG-ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539 (790)
Q Consensus 461 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 539 (790)
|||+||.++++.|+. ++|.++|++|.+.|+.||.+||++++.++.+.+-++.
T Consensus 202 -------------------------TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~-- 254 (1134)
T 3spa_A 202 -------------------------SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA-- 254 (1134)
T ss_dssp -------------------------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHH--
T ss_pred -------------------------HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHH--
Confidence 555556666666664 6788999999999999999999999887766544444
Q ss_pred HHHHHcccCCCCC----CChhHHHHHHHHHHhcC
Q 003868 540 RYFETMHGPYGIP----PGEDHYARFIDLLCRAG 569 (790)
Q Consensus 540 ~~~~~~~~~~~~~----p~~~~~~~li~~~~~~g 569 (790)
.+++...+..+ |...+...|.+.|.+.+
T Consensus 255 --Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 255 --VHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp --HGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred --HHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 34443322211 22445556777777665
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=3.3e-16 Score=175.20 Aligned_cols=132 Identities=13% Similarity=0.112 Sum_probs=117.1
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh
Q 003868 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMP-------NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521 (790)
Q Consensus 449 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 521 (790)
...-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456789999999999999999999997653 48999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCC-HHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 003868 522 FLTVLSACNHAGL-VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581 (790)
Q Consensus 522 ~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 581 (790)
|+++|.++++.|. .++|.++|++|.+. |+.||..+|++++....|.+-++...++...+
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999999997 58899999999997 99999999999999888876666665554443
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.60 E-value=1.5e-14 Score=150.49 Aligned_cols=259 Identities=9% Similarity=-0.008 Sum_probs=161.9
Q ss_pred ChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHH
Q 003868 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNAILSAYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGL 393 (790)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~ 393 (790)
+...+..+...+...|++++|..+|+++.+ .+...|..+...+.+.|++++|...|+++.+. +..+|..+...|
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 455677888999999999999999998763 46778999999999999999999999998753 567899999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHH-------------H--HHHccCChHHHHHHHHHHHHhCCCCchhHHH
Q 003868 394 AQNGYGEEGLKLFSQMRLEGFKPCDY-AFAGAI-------------T--SCAGLGALENGRQLHAQLVHSGYDSSLSAGN 457 (790)
Q Consensus 394 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll-------------~--~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~ 457 (790)
...|++++|+..|+++.... |+.. .+..+. . .+...|++++|...+..+.+.. +.+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~----- 171 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PND----- 171 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTC-----
T ss_pred HHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCC-----
Confidence 99999999999999998753 3322 222220 1 1444555555555555555443 223
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCCHH
Q 003868 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD-RITFLTVLSACNHAGLVK 536 (790)
Q Consensus 458 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 536 (790)
...|..+...+...|++++|+..++++.+. .|+ ..++..+...+...|+++
T Consensus 172 --------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 172 --------------------------AQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp --------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred --------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHH
Confidence 344444445555555555555555555442 222 234445555555555555
Q ss_pred HHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHHhCC
Q 003868 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-------------SAPIWEALLAGCRIHGN 602 (790)
Q Consensus 537 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-------------~~~~~~~ll~~~~~~g~ 602 (790)
+|..+|+.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|+
T Consensus 224 ~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 224 EALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 555555554431 1223445555555555555555555555543 1112 24456666666666666
Q ss_pred HHHHHHHHHHHHhc
Q 003868 603 IDLGIQAAEQLFQL 616 (790)
Q Consensus 603 ~~~a~~~~~~~~~~ 616 (790)
.++|...++++++.
T Consensus 302 ~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 302 PDLVELTYAQNVEP 315 (327)
T ss_dssp HHHHHHHTTCCSHH
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666555444
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.6e-13 Score=137.10 Aligned_cols=226 Identities=11% Similarity=0.010 Sum_probs=165.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCC--CCchhHHHHHHH
Q 003868 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY--DSSLSAGNALIT 461 (790)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~--~~~~~~~~~li~ 461 (790)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+.+... .++..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------- 76 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------- 76 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH-------
Confidence 345556666666666666666666665554 4444555555555555555555555554443210 00000
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 003868 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY 541 (790)
Q Consensus 462 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 541 (790)
.....|..+...|...|++++|+..|++..+ ..|+. ..+...|++++|...
T Consensus 77 --------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 77 --------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKELKK 127 (258)
T ss_dssp --------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHHHHH
Confidence 0146777788888888899999999988888 45653 345667888999999
Q ss_pred HHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 003868 542 FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PF-KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619 (790)
Q Consensus 542 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 619 (790)
++.+... .+.+...+..+...+.+.|++++|.+.+++. .. +.+..+|..+...+...|++++|+..++++++..|+
T Consensus 128 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 128 AEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp HHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 9988752 2334677888899999999999999999886 22 346788999999999999999999999999999999
Q ss_pred CCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 620 HAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 620 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
++..+..++.+|...|++++|.+.+++..+
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999998865
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.55 E-value=1.2e-13 Score=134.31 Aligned_cols=195 Identities=14% Similarity=0.080 Sum_probs=155.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHH
Q 003868 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTV 525 (790)
Q Consensus 450 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l 525 (790)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+ ..|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 45666778888888899999999999887654 3677888899999999999999999999998 46765 577888
Q ss_pred HHHHHcc-----------CCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 003868 526 LSACNHA-----------GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSAPIWEAL 593 (790)
Q Consensus 526 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 593 (790)
..++... |++++|...|++..+. .+.+...+..+..+|...|++++|++.|++. ....+...|..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8888888 9999999999998863 3445788899999999999999999999886 112788899999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHH
Q 003868 594 LAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 594 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
...+...|++++|+..++++++.+|+++..+..++.++...|++++|.+.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999988753
No 38
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.55 E-value=1.9e-12 Score=142.33 Aligned_cols=374 Identities=9% Similarity=-0.060 Sum_probs=237.5
Q ss_pred CeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccC-ChhhHHHHHHHHHccCChHHHH
Q 003868 224 DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQL-DEFTYTSVISACANSGLFRLGK 302 (790)
Q Consensus 224 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~ 302 (790)
....||.|...+...|++++|++.|++-.+-. + ........| ...+|..+...|...|++++|.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~------------~---~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~ 114 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELI------------Q---QEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQ 114 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------H---HHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------------H---hcCccccchHHHHHHHHHHHHHHHcCChHHHH
Confidence 35568999999999999999999998652100 0 000011123 3467888999999999999999
Q ss_pred HHHHHHHHhcCCC---CCCCChhHHHHHHHHHHHC--CCHHHHHHHHhhCCC--C-ChhHHHHHHHH---HHHcCCHHHH
Q 003868 303 QVHAYLLRTEAKP---TPEFSLPVNNALVTLYWKC--GKVNEARDIFNQMPE--R-DLVSWNAILSA---YVSAGLIDEA 371 (790)
Q Consensus 303 ~~~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~--g~~~~A~~~f~~m~~--~-~~~~~~~li~~---~~~~g~~~~A 371 (790)
..++.++...... .......++..+..++.+. +++++|...|++..+ | +...+..+... +...++.++|
T Consensus 115 ~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~a 194 (472)
T 4g1t_A 115 IYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNA 194 (472)
T ss_dssp HHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCT
T ss_pred HHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHH
Confidence 9998876531111 1112345566665566554 468999999998763 4 44455555544 4456778889
Q ss_pred HHHHHHhcc---CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 003868 372 KSLFEAMRE---RNLLSWTVMISGLAQ----NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444 (790)
Q Consensus 372 ~~~~~~m~~---~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~ 444 (790)
++.|++..+ .+..++..+...+.. .|+.++|.+.+++..... +.+...+..+...+...|++++|...+..+
T Consensus 195 l~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 273 (472)
T 4g1t_A 195 IDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKA 273 (472)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 988887764 345666666655544 567889999999988764 456677888999999999999999999999
Q ss_pred HHhCCCCchhHHHHHHHHHHhc-------------------CCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHH
Q 003868 445 VHSGYDSSLSAGNALITMYARC-------------------GVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGAR 502 (790)
Q Consensus 445 ~~~g~~~~~~~~~~li~~y~~~-------------------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 502 (790)
.+.. +.+..++..+...|... +..+.|...|+...+ .+..+|..+...|...|++++
T Consensus 274 l~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~ 352 (472)
T 4g1t_A 274 LEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352 (472)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHH
T ss_pred HHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHH
Confidence 9874 44566777777666432 235567777766542 356678889999999999999
Q ss_pred HHHHHHHHHHcCCCCChh----hHHHHHH-HHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 003868 503 AIELYEQMLKEGILPDRI----TFLTVLS-ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577 (790)
Q Consensus 503 A~~~~~~m~~~g~~p~~~----t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 577 (790)
|++.|++..+. .|+.. .+..+.. ...+.|+.++|+..|++..+ +.|+........ +.+.++
T Consensus 353 A~~~~~kaL~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~ 418 (472)
T 4g1t_A 353 AEYYFQKEFSK--ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKI 418 (472)
T ss_dssp HHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHH
T ss_pred HHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHH
Confidence 99999999985 44432 2223322 34578999999999999875 455543322222 223333
Q ss_pred HHhC-CC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhH
Q 003868 578 IDSL-PF-KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628 (790)
Q Consensus 578 ~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 628 (790)
+++. .. +.+..+|..|...+...|++++|++.|++++++.|.+|.+...++
T Consensus 419 ~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 419 AKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 3332 12 235678999999999999999999999999999999888777665
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=2.5e-13 Score=135.68 Aligned_cols=233 Identities=12% Similarity=0.045 Sum_probs=161.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhcc--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC----HHHHHH
Q 003868 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRE--RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG--FKPC----DYAFAG 423 (790)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~t~~~ 423 (790)
...|..+...+...|++++|...|++..+ .+..+|..+...|...|++++|+..|++..... ..|+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45788899999999999999999988764 567889999999999999999999999987742 1222 456667
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHH
Q 003868 424 AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503 (790)
Q Consensus 424 ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 503 (790)
+...+...|++++|...+..+.+.. |+. . .+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~-------------------------------~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------D-------------------------------ILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------H-------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------H-------------------------------HHHHHhHHHHH
Confidence 7777777777777777777777653 221 1 23334555566
Q ss_pred HHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 003868 504 IELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL- 581 (790)
Q Consensus 504 ~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~- 581 (790)
+..++++.. ..|+. ..+..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.+++.
T Consensus 125 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 125 LKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666666555 23333 34555555666666666666666666542 2334566667777777777777777777665
Q ss_pred CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC------CCCCcchHhhH
Q 003868 582 PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM------PHHAGTYVLLS 628 (790)
Q Consensus 582 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~ 628 (790)
...| +...|..+...+...|++++|...+++++++. |++...+..+.
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 2223 46678888888888888888888888888887 66655555443
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.51 E-value=5.9e-13 Score=134.55 Aligned_cols=240 Identities=11% Similarity=-0.086 Sum_probs=175.6
Q ss_pred cCChHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 003868 396 NGYGEEGLKLFSQMRLEGFK---PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472 (790)
Q Consensus 396 ~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 472 (790)
.|++++|+..|+++.+.... .+..++..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 34567777777776654211 134456666666777777777777777777653 34566777778888888888888
Q ss_pred HHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCC
Q 003868 473 NCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY 549 (790)
Q Consensus 473 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 549 (790)
.+.|+++.+ .+...|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|..+++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 888876653 3577888888999999999999999999988 5677766666666667789999999999877653
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcc
Q 003868 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS-----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623 (790)
Q Consensus 550 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 623 (790)
.+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++..|++..
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 250 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV- 250 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH-
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH-
Confidence 34444444 4777778888889999988875 32232 467889999999999999999999999999987744
Q ss_pred hHhhHHHHHhcCChhHHHHHH
Q 003868 624 YVLLSNMYANLGRWDDAARVR 644 (790)
Q Consensus 624 ~~~l~~~~~~~g~~~~a~~~~ 644 (790)
..+.++...|++++|.+.+
T Consensus 251 --~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 --EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHhhHHHH
Confidence 4467788999999988765
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.49 E-value=6.2e-13 Score=134.22 Aligned_cols=244 Identities=11% Similarity=-0.063 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 003868 354 SWNAILSAYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC--DYAFAGAITSC 428 (790)
Q Consensus 354 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~ 428 (790)
.+......+...|++++|...|++..+. +...|..+...|...|++++|+..|++....+..|+ ...+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3445556667777777777777766542 334666666777777777777777777666321111 22355556666
Q ss_pred HccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHH
Q 003868 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIE 505 (790)
Q Consensus 429 ~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 505 (790)
...|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|++..+ .+...|..+...+...+++++|++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666543 22344555555556666666666665555543 234444444412222335555555
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhC-
Q 003868 506 LYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK---FSEAKDVIDSL- 581 (790)
Q Consensus 506 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~- 581 (790)
.|++..+ ..|+. ...+..+...+...|+ +++|...+++.
T Consensus 164 ~~~~a~~--~~p~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 164 SFVKVLE--LKPNI-----------------------------------YIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHH--HSTTC-----------------------------------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHH--hCccc-----------------------------------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 5555554 23332 3333334444444443 33344433332
Q ss_pred ---CCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcC
Q 003868 582 ---PFKPS------APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLG 635 (790)
Q Consensus 582 ---~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 635 (790)
...|+ ..+|..+...+...|++++|...++++++++|+++.+...+.......+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 11122 2467778888889999999999999999999999877777666554433
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.44 E-value=6.8e-12 Score=136.46 Aligned_cols=344 Identities=10% Similarity=0.020 Sum_probs=237.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCH---HHHHHHHhhCCCCChhHHHHHHHHHHH
Q 003868 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV---NEARDIFNQMPERDLVSWNAILSAYVS 364 (790)
Q Consensus 288 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~m~~~~~~~~~~li~~~~~ 364 (790)
+...+.+.|++++|.+.+....+ .+ +...+..|..+|...|+. ++|...|+...+.+...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~----~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAE----LG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HT---CCTGGGTCC----------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH----CC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 44556778999999999999987 44 344556677778888888 899999999887777778888776666
Q ss_pred cC-----CHHHHHHHHHHhccC-ChhHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChH
Q 003868 365 AG-----LIDEAKSLFEAMRER-NLLSWTVMISGLAQNGYG---EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435 (790)
Q Consensus 365 ~g-----~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 435 (790)
.+ +.++|...|++..++ +..++..+...|...+.. .++.+.+......|. ......+...+...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcc
Confidence 65 788999999998876 456888888888876654 345556666555553 334455566666667565
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhcCCC---CCHhHHHHHHHHHHhc----CChHHHHH
Q 003868 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCG---VVEAANCVFNTMPN---VDSVSWNAMIAALGQH----GNGARAIE 505 (790)
Q Consensus 436 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~ 505 (790)
.+......+.+.-...+...+..|..+|.+.| +.++|.+.|+...+ ++...+..|...|... +++++|+.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 55554444443333344458889999999999 89999999987653 4455556677777554 69999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHH-H--HccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcC-----ChHHHHHH
Q 003868 506 LYEQMLKEGILPDRITFLTVLSA-C--NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG-----KFSEAKDV 577 (790)
Q Consensus 506 ~~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~ 577 (790)
.|++.. .| +...+..+... + ...+++++|..+|++..+. | +...+..|..+|. .| ++++|.+.
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 999987 32 34455555555 3 4689999999999998864 4 6677778888887 55 99999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHh----cCChhHHHHHHHHHHh
Q 003868 578 IDSLPFKPSAPIWEALLAGCRI----HGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN----LGRWDDAARVRKLMRD 649 (790)
Q Consensus 578 ~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~ 649 (790)
|++.- ..+...+..|...|.. ..|.++|...++++.+. .++.+...|+.+|.. ..+.++|..++++..+
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 99988 6678888888877765 34999999999998874 567788999999975 4589999999999988
Q ss_pred CCCc
Q 003868 650 RGVK 653 (790)
Q Consensus 650 ~g~~ 653 (790)
.|..
T Consensus 387 ~g~~ 390 (452)
T 3e4b_A 387 QDTP 390 (452)
T ss_dssp TCCH
T ss_pred CCCH
Confidence 7753
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.43 E-value=2.7e-11 Score=122.28 Aligned_cols=225 Identities=11% Similarity=-0.053 Sum_probs=140.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCCchhHHH
Q 003868 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG----LGALENGRQLHAQLVHSGYDSSLSAGN 457 (790)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~i~~~~~~~g~~~~~~~~~ 457 (790)
+..++..+...|...|++++|+..|++..+. -+...+..+...+.. .+++++|...+....+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 4456666666777777777777777766652 233444445555555 555555555555555443
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc--
Q 003868 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ----HGNGARAIELYEQMLKEGILPDRITFLTVLSACNH-- 531 (790)
Q Consensus 458 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-- 531 (790)
+..++..+...|.. .+++++|+..|++..+.+ +...+..+...|..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 34444445555555 566666666666665543 44555555556665
Q ss_pred --cCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----hC
Q 003868 532 --AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR----AGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI----HG 601 (790)
Q Consensus 532 --~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g 601 (790)
.+++++|..+|++..+. + +...+..+...|.+ .+++++|.+.+++.-...+...+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 66666666666666543 2 34455556666666 66777777776654222345666677777777 77
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHhhHHHHHh----cCChhHHHHHHHHHHhCCC
Q 003868 602 NIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN----LGRWDDAARVRKLMRDRGV 652 (790)
Q Consensus 602 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 652 (790)
++++|+..++++++..| +..+..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 88888888888777755 5677778888877 7888888888887766543
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.42 E-value=9.7e-12 Score=123.80 Aligned_cols=194 Identities=12% Similarity=-0.014 Sum_probs=139.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHH
Q 003868 454 SAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP-DRITFLTVLSAC 529 (790)
Q Consensus 454 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~ 529 (790)
..+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.+. .| +...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHH
Confidence 4455555666666666666666655432 35566777777777778888888888777764 34 445667777777
Q ss_pred HccCCHHHHHHHHHHcccCCCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHHH
Q 003868 530 NHAGLVKEGRRYFETMHGPYGIPP-GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIHGNIDLG 606 (790)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a 606 (790)
...|++++|.++++.+.+. +..| +...+..+...|.+.|++++|.+.+++. ... .+...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 7888888888888877652 2344 4566777777888888888888887765 222 3566777888888888888888
Q ss_pred HHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 607 IQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 607 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
...++++++..|++...+..++.+|...|++++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888887653
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.41 E-value=2.1e-11 Score=121.39 Aligned_cols=208 Identities=13% Similarity=0.030 Sum_probs=134.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 003868 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITM 462 (790)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 462 (790)
...|..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|.+.+..+.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------
Confidence 3456666666666666666666666665542 2233444444444444555555555444444432
Q ss_pred HHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHH
Q 003868 463 YARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRY 541 (790)
Q Consensus 463 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~ 541 (790)
..+...|..+...|...|++++|++.|+++.+.+..|+. ..+..+..++...|++++|..+
T Consensus 102 ------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 102 ------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 124455666666677777777777777776663344533 4566666677777777777777
Q ss_pred HHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 003868 542 FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619 (790)
Q Consensus 542 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 619 (790)
|+.+.+. .+.+...+..+...|.+.|++++|.+.+++. ... .+...|..+...+...|+.++|.+.++++++..|+
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 7776652 2334667777888888888888888888775 223 45667788888888899999999999999999988
Q ss_pred CCcchH
Q 003868 620 HAGTYV 625 (790)
Q Consensus 620 ~~~~~~ 625 (790)
++....
T Consensus 242 ~~~~~~ 247 (252)
T 2ho1_A 242 SLEYQE 247 (252)
T ss_dssp SHHHHH
T ss_pred CHHHHH
Confidence 865443
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.41 E-value=1.4e-11 Score=119.95 Aligned_cols=195 Identities=13% Similarity=0.054 Sum_probs=143.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHH
Q 003868 452 SLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP-DRITFLTVLS 527 (790)
Q Consensus 452 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 527 (790)
+..++..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.+. .| +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 344556666666667777777766665432 34667777777788888888888888887774 34 4456777777
Q ss_pred HHHcc-CCHHHHHHHHHHcccCCCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCH
Q 003868 528 ACNHA-GLVKEGRRYFETMHGPYGIPPG-EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNI 603 (790)
Q Consensus 528 a~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 603 (790)
.+... |++++|..+++.+.+. +..|+ ...+..+...+.+.|++++|.+.++++ ...| +...|..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 78888 8888888888887762 33333 566777888888888888888888765 2223 467788888888888888
Q ss_pred HHHHHHHHHHHhcCC-CCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 604 DLGIQAAEQLFQLMP-HHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 604 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
++|...++++++..| +++..+..++..+...|+.++|..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 888888888888888 8878888888888888888888888888764
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.41 E-value=6.9e-12 Score=132.12 Aligned_cols=237 Identities=10% Similarity=0.036 Sum_probs=145.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 003868 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA-LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470 (790)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 470 (790)
.+.+.|++++|+..|++.+... +-+...|..+..++...|+ +++|...++.+++.. +.+..+|+.+..+|.+.|+++
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~ 183 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPS 183 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCT
T ss_pred HHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHH
Confidence 3333333444444444444321 1123333444444444443 444444444444432 223445555555555555555
Q ss_pred HHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHc-cCCHHHH-----HH
Q 003868 471 AANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNH-AGLVKEG-----RR 540 (790)
Q Consensus 471 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~-~g~~~~a-----~~ 540 (790)
+|...|+++.+ .+...|..+..++...|++++|+..|+++++ +.|+. ..|..+..++.. .|..++| +.
T Consensus 184 eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~ 261 (382)
T 2h6f_A 184 QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQ 261 (382)
T ss_dssp THHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 55555555432 3566777777777777888888888888877 45544 567777777776 5554565 46
Q ss_pred HHHHcccCCCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhC--------C-HHHHHH
Q 003868 541 YFETMHGPYGIPPGEDHYARFIDLLCRAG--KFSEAKDVIDSLPFKP-SAPIWEALLAGCRIHG--------N-IDLGIQ 608 (790)
Q Consensus 541 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g--------~-~~~a~~ 608 (790)
.|++..+. .+-+...|..+..+|.+.| ++++|.+.++++...| +...+..+...+...| + .++|+.
T Consensus 262 ~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~ 339 (382)
T 2h6f_A 262 YTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALE 339 (382)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 67766642 2335667777777787777 5788888887764444 4567778888887763 2 588999
Q ss_pred HHHHH-HhcCCCCCcchHhhHHHHHhc
Q 003868 609 AAEQL-FQLMPHHAGTYVLLSNMYANL 634 (790)
Q Consensus 609 ~~~~~-~~~~p~~~~~~~~l~~~~~~~ 634 (790)
+++++ .+++|.....|..++..+...
T Consensus 340 ~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 340 LCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 99999 899999888888877766543
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.40 E-value=3.2e-11 Score=121.72 Aligned_cols=231 Identities=10% Similarity=-0.084 Sum_probs=159.3
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHhccC-ChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003868 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRER-NLLSWTVMISGLAQ----NGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424 (790)
Q Consensus 350 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 424 (790)
.+..++..+...|...|++++|.+.|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 35678888999999999999999999998876 45788999999999 999999999999998876 66777777
Q ss_pred HHHHHc----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCh
Q 003868 425 ITSCAG----LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500 (790)
Q Consensus 425 l~~~~~----~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 500 (790)
...+.. .+++++|...++...+.+ +...+..+...|.+. ....|++
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~---------------------------~~~~~~~ 130 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG---------------------------KVVTRDF 130 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC---------------------------SSSCCCH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC---------------------------CCcccCH
Confidence 777877 888888888888877654 344444444444440 0004555
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHh----cCChH
Q 003868 501 ARAIELYEQMLKEGILPDRITFLTVLSACNH----AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR----AGKFS 572 (790)
Q Consensus 501 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~ 572 (790)
++|+..|++..+.+ +...+..+...+.. .+++++|..+|+...+. .+...+..+...|.+ .++++
T Consensus 131 ~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~ 203 (273)
T 1ouv_A 131 KKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFK 203 (273)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred HHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 55555555555543 33444445555554 56666666666665542 134555566666666 67777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCC
Q 003868 573 EAKDVIDSLPFKPSAPIWEALLAGCRI----HGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 573 ~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~ 620 (790)
+|.+.+++.-...+...+..+...+.. .+++++|...++++++..|++
T Consensus 204 ~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 204 EALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 777776654212235566667777776 778888888888888877765
No 49
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.40 E-value=4.5e-12 Score=137.89 Aligned_cols=310 Identities=14% Similarity=0.079 Sum_probs=220.4
Q ss_pred HHHHHHHCCCHHHHHHHHhhCCC-CChhHHHHHHHHHHHcCCH---HHHHHHHHHhccCChhHHHHHHHHHHhcC-----
Q 003868 327 LVTLYWKCGKVNEARDIFNQMPE-RDLVSWNAILSAYVSAGLI---DEAKSLFEAMRERNLLSWTVMISGLAQNG----- 397 (790)
Q Consensus 327 li~~~~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~li~~~~~~g----- 397 (790)
+...+.+.|++++|.++|++..+ .+..++..+...|...|+. ++|.+.|++..+.++.++..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 56778889999999999998765 3556677777777788888 99999999998887788888888666655
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC----CHH
Q 003868 398 YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL---ENGRQLHAQLVHSGYDSSLSAGNALITMYARCG----VVE 470 (790)
Q Consensus 398 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~---~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g----~~~ 470 (790)
+.++|+..|++....|... .+..+...|...+.. ..+.+.+......|. ......|...|...+ ..+
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHH
Confidence 7789999999999877433 455555556555443 345555555555553 556777888888887 566
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc----CCHHHHHHHHH
Q 003868 471 AANCVFNTMPNVDSVSWNAMIAALGQHG---NGARAIELYEQMLKEGILPDRITFLTVLSACNHA----GLVKEGRRYFE 543 (790)
Q Consensus 471 ~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~----g~~~~a~~~~~ 543 (790)
.+..+++.....++..+..|...|...| +.++|++.|++..+.| .++...+..+...|... +++++|..+|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 6777777777777779999999999999 9999999999999976 44555556666677654 79999999999
Q ss_pred HcccCCCCCCChhHHHHHHHH-H--HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHh
Q 003868 544 TMHGPYGIPPGEDHYARFIDL-L--CRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG-----NIDLGIQAAEQLFQ 615 (790)
Q Consensus 544 ~~~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~ 615 (790)
... +-+...+..|..+ | ...|++++|.+.|++.-...+...+..|...|. .| |.++|...++++.
T Consensus 242 ~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 242 KIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp HHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred HHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 976 2345667777776 4 568999999999998743447778888888777 66 9999999999988
Q ss_pred cCCCCCcchHhhHHHHHh----cCChhHHHHHHHHHHhCCC
Q 003868 616 LMPHHAGTYVLLSNMYAN----LGRWDDAARVRKLMRDRGV 652 (790)
Q Consensus 616 ~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 652 (790)
|.++.++..|+.+|.. ..++++|.+++++..+.|.
T Consensus 315 --~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 315 --GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp --TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred --CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 8899999999999987 3499999999999988765
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.40 E-value=3.3e-12 Score=126.26 Aligned_cols=145 Identities=11% Similarity=0.074 Sum_probs=78.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHH
Q 003868 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562 (790)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 562 (790)
+...|..+...+...|++++|++.|+++.+.. ..+...+..+...+...|++++|..+++++.+. .+.+...+..+.
T Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~ 166 (243)
T 2q7f_A 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFG 166 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHH
Confidence 34445555555555566666666666555531 123344555555555666666666666555542 223445555556
Q ss_pred HHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHH
Q 003868 563 DLLCRAGKFSEAKDVIDSL-PF-KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630 (790)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 630 (790)
..+.+.|++++|.+.+++. .. +.+..+|..+...+...|++++|...++++++..|+++..+..+..+
T Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 167 MCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 6666666666666665554 11 22345566666666666666666666666666666665555444433
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.40 E-value=3.8e-12 Score=125.82 Aligned_cols=195 Identities=14% Similarity=0.104 Sum_probs=153.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHH
Q 003868 452 SLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP-DRITFLTVLS 527 (790)
Q Consensus 452 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 527 (790)
....+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+. .| +...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHHH
Confidence 445666777778888888888888877643 36778888999999999999999999999885 44 4567888889
Q ss_pred HHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCCHHH
Q 003868 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PF-KPSAPIWEALLAGCRIHGNIDL 605 (790)
Q Consensus 528 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~ 605 (790)
.+...|++++|..+++++.+. .+.+...+..+...+.+.|++++|.+.++++ .. +.+...|..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998863 3456788999999999999999999999886 22 3467889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 606 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
|+..++++++..|+++.++..++.+|...|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999763
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.38 E-value=3.1e-11 Score=117.50 Aligned_cols=210 Identities=11% Similarity=0.016 Sum_probs=139.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 003868 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITM 462 (790)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 462 (790)
...|..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|...+..+.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------- 72 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-------------- 72 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------------
Confidence 3455666666666666666666666665532 2233344444444444444444444444444321
Q ss_pred HHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHH
Q 003868 463 YARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH-GNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRR 540 (790)
Q Consensus 463 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~ 540 (790)
..+...|..+...+... |++++|+..|+++.+.+..|+. ..+..+..++...|++++|..
T Consensus 73 ------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 73 ------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp ------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 12455666777777777 8888888888887773334443 466777777888888888888
Q ss_pred HHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-C-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 003868 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PF-K-PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617 (790)
Q Consensus 541 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 617 (790)
+|+.+.+. .+.+...+..+...+.+.|++++|.+.+++. .. + .+...|..+...+...|+.+.+...++.+.+..
T Consensus 135 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 135 YLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 88887752 2334677888888888888888888888775 22 2 456677777777888999999999999999999
Q ss_pred CCCCcchHhh
Q 003868 618 PHHAGTYVLL 627 (790)
Q Consensus 618 p~~~~~~~~l 627 (790)
|+++.....+
T Consensus 213 p~~~~~~~~l 222 (225)
T 2vq2_A 213 PYSEELQTVL 222 (225)
T ss_dssp TTCHHHHHHH
T ss_pred CCCHHHHHHh
Confidence 9887655444
No 53
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.38 E-value=1.5e-11 Score=119.37 Aligned_cols=189 Identities=17% Similarity=0.049 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 003868 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465 (790)
Q Consensus 386 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 465 (790)
|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++.+++.. +.+...+..+...|.+
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~ 85 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVA 85 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 3333444444444444444444444321 1223333344444444444444444444444432 2233344444444444
Q ss_pred c-----------CCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc
Q 003868 466 C-----------GVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531 (790)
Q Consensus 466 ~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 531 (790)
. |++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. .+...+..+..++..
T Consensus 86 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~ 163 (217)
T 2pl2_A 86 LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLS 163 (217)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHH
Confidence 4 444444444443321 134444445555555555555555555555543 344444555555555
Q ss_pred cCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 003868 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580 (790)
Q Consensus 532 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 580 (790)
.|++++|...|+.+.+. .+.+...+..+...+.+.|++++|.+.+++
T Consensus 164 ~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 164 MGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555555554431 122344444455555555555555554443
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.38 E-value=1.9e-11 Score=115.20 Aligned_cols=164 Identities=17% Similarity=0.153 Sum_probs=139.1
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHH
Q 003868 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF 561 (790)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 561 (790)
+...|..+...|.+.|++++|++.|++..+ +.|+. .++..+..++...|++++|...+..... ..+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHH
Confidence 566788888889999999999999999888 46655 5778888888999999999999988875 334456777788
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhH
Q 003868 562 IDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639 (790)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 639 (790)
...+...+++++|.+.+++. ... .+...|..+...+...|++++|+..++++++.+|.++.+|..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88889999999999988875 223 3677888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 003868 640 AARVRKLMRDR 650 (790)
Q Consensus 640 a~~~~~~m~~~ 650 (790)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999998763
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.37 E-value=4.6e-12 Score=136.42 Aligned_cols=270 Identities=10% Similarity=0.011 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccC---Ch----hHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHH
Q 003868 354 SWNAILSAYVSAGLIDEAKSLFEAMRER---NL----LSWTVMISGLAQNGYGEEGLKLFSQMRLE----GFKP-CDYAF 421 (790)
Q Consensus 354 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~ 421 (790)
.+..+...+...|++++|...|++..+. +. ..|..+...|...|++++|+..|++.... +..| ....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3445556677777777777777666542 21 35666666666666677776666665432 1011 12234
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC--
Q 003868 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN-- 499 (790)
Q Consensus 422 ~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-- 499 (790)
..+...+...|++++|...+..+.+..-. .++ ......+|..+...|...|+
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~-----------~~~~~~~~~~l~~~~~~~g~~~ 183 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQ---------------LGD-----------RLSEGRALYNLGNVYHAKGKHL 183 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------HTC-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH---------------hhc-----------hHHHHHHHHHHHHHHHHcCccc
Confidence 44444445555555555555444332000 000 00022345555666666666
Q ss_pred ---------------hHHHHHHHHHHHHc----CCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC----h
Q 003868 500 ---------------GARAIELYEQMLKE----GILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG----E 555 (790)
Q Consensus 500 ---------------~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~ 555 (790)
+++|++.+++..+. +-.|.. .++..+...+...|++++|..++++..+...-.++ .
T Consensus 184 ~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (411)
T 4a1s_A 184 GQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAER 263 (411)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 66666666655431 111111 35666667777778888887777776542110111 2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC----CCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------C
Q 003868 556 DHYARFIDLLCRAGKFSEAKDVIDSL----PFKP----SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH------A 621 (790)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~ 621 (790)
..+..+...|...|++++|.+.+++. +... ...++..+...+...|++++|...++++++..+.. .
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 343 (411)
T 4a1s_A 264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA 343 (411)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHH
Confidence 36677788888888888888887765 1111 14567788888899999999999999988774433 3
Q ss_pred cchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 622 GTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.++..++.+|...|++++|.+.+++..+
T Consensus 344 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 344 RACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4888999999999999999999998865
No 56
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.37 E-value=3.9e-11 Score=120.89 Aligned_cols=218 Identities=12% Similarity=0.030 Sum_probs=156.2
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C----CHhHHHHHHHHHHhcCCh
Q 003868 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--V----DSVSWNAMIAALGQHGNG 500 (790)
Q Consensus 427 ~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~ 500 (790)
.+...|++++|...+..+.+.. +.+...+..+...|...|++++|.+.|++..+ + ...+|..+...+...|++
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~ 90 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQD 90 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccH
Confidence 3334444444444444444332 12233444555555555555555555554432 1 233577888888999999
Q ss_pred HHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 003868 501 ARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579 (790)
Q Consensus 501 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 579 (790)
++|+..|++..+. .|+. ..+..+...+...|++++|...|++..+. .+.+...+..+...+...+++++|.+.++
T Consensus 91 ~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 91 SLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp HHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999884 4544 68888899999999999999999998863 34456777777734445569999999998
Q ss_pred hC-CCCC-CHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhcC---CCC-----CcchHhhHHHHHhcCChhHHHHHHHH
Q 003868 580 SL-PFKP-SAPIWEALLAGCRIHGN---IDLGIQAAEQLFQLM---PHH-----AGTYVLLSNMYANLGRWDDAARVRKL 646 (790)
Q Consensus 580 ~~-~~~p-~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~ 646 (790)
+. ...| +...|..+...+...|+ .++|...++++++.. |+. ..+|..++..|...|++++|.+.+++
T Consensus 167 ~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 246 (272)
T 3u4t_A 167 KVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN 246 (272)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 86 3344 46778888888888888 888999999998875 442 25788899999999999999999999
Q ss_pred HHh
Q 003868 647 MRD 649 (790)
Q Consensus 647 m~~ 649 (790)
..+
T Consensus 247 al~ 249 (272)
T 3u4t_A 247 ILA 249 (272)
T ss_dssp HHH
T ss_pred HHh
Confidence 976
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.37 E-value=1.9e-11 Score=123.27 Aligned_cols=236 Identities=7% Similarity=-0.136 Sum_probs=155.0
Q ss_pred CCHHHHHHHHHHhccC-------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHH
Q 003868 366 GLIDEAKSLFEAMRER-------NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438 (790)
Q Consensus 366 g~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 438 (790)
|++++|+..|+++.+. +..+|..+...|...|++++|+..|+++.... +.+..++..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 5555666666555542 23456666666666666777777777766643 334566666667777777777777
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003868 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516 (790)
Q Consensus 439 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 516 (790)
..+..+++.. +.+..++..+...|.+.|++++|.+.|+++.+ |+...+...+..+...|++++|+..+++.... .
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--S 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--S
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--C
Confidence 7777776653 33466777777778888888888887776643 33333333444456668999999999887774 3
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHH
Q 003868 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG-----EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSAPIW 590 (790)
Q Consensus 517 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 590 (790)
|+......++..+...++.++|...+..+.+. .|. ...+..+...|.+.|++++|.+.+++. ...|+. |
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~ 249 (275)
T 1xnf_A 175 DKEQWGWNIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--F 249 (275)
T ss_dssp CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--C
T ss_pred CcchHHHHHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--H
Confidence 33333344677777888888999998887753 332 467888889999999999999999876 445533 2
Q ss_pred HHHHHHHHHhCCHHHHHHHH
Q 003868 591 EALLAGCRIHGNIDLGIQAA 610 (790)
Q Consensus 591 ~~ll~~~~~~g~~~~a~~~~ 610 (790)
.....++...|++++|++.+
T Consensus 250 ~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhhHHHH
Confidence 33345666777888777665
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.36 E-value=1.2e-11 Score=132.57 Aligned_cols=195 Identities=14% Similarity=0.079 Sum_probs=127.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----HhHHHHHHHHHHhcCC--------------------hHHHHH
Q 003868 455 AGNALITMYARCGVVEAANCVFNTMPN-----VD----SVSWNAMIAALGQHGN--------------------GARAIE 505 (790)
Q Consensus 455 ~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 505 (790)
++..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 444455555555555555555554432 11 3356666666666777 777777
Q ss_pred HHHHHHHc----CCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC----hhHHHHHHHHHHhcCChHHHHH
Q 003868 506 LYEQMLKE----GILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG----EDHYARFIDLLCRAGKFSEAKD 576 (790)
Q Consensus 506 ~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~ 576 (790)
.+++..+. +-.|.. .++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|.+
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 77665431 111111 35666777777888888888887776542111111 2367777888888888888888
Q ss_pred HHHhC----CCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------CcchHhhHHHHHhcCChhHHHH
Q 003868 577 VIDSL----PFKPS----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH------AGTYVLLSNMYANLGRWDDAAR 642 (790)
Q Consensus 577 ~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~ 642 (790)
.+++. +..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 87764 11112 4467778888888899999999998888774433 4577888999999999999999
Q ss_pred HHHHHHh
Q 003868 643 VRKLMRD 649 (790)
Q Consensus 643 ~~~~m~~ 649 (790)
.+++..+
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888754
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.35 E-value=1.5e-11 Score=127.78 Aligned_cols=229 Identities=14% Similarity=0.072 Sum_probs=146.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----HhH
Q 003868 421 FAGAITSCAGLGALENGRQLHAQLVHS----GYD-SSLSAGNALITMYARCGVVEAANCVFNTMPN-----VD----SVS 486 (790)
Q Consensus 421 ~~~ll~~~~~~g~~~~a~~i~~~~~~~----g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~ 486 (790)
+..+...+...|++++|...+..+.+. +.. ....++..+...|...|++++|...|++..+ .+ ..+
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 125 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 334444444444444444444443321 111 1133445555566666666666655554432 11 235
Q ss_pred HHHHHHHHHhcCC--------------------hHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHccCCHHHHHHH
Q 003868 487 WNAMIAALGQHGN--------------------GARAIELYEQMLKE----GILPD-RITFLTVLSACNHAGLVKEGRRY 541 (790)
Q Consensus 487 ~~~li~~~~~~g~--------------------~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 541 (790)
+..+...|...|+ +++|++.+++..+. +..|. ..++..+...+...|++++|..+
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 205 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6666667777777 77777777665431 11111 13566677778888888888888
Q ss_pred HHHcccCCCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHhCCHHHHHHH
Q 003868 542 FETMHGPYGIPPG----EDHYARFIDLLCRAGKFSEAKDVIDSL----PFKPS----APIWEALLAGCRIHGNIDLGIQA 609 (790)
Q Consensus 542 ~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~ 609 (790)
++...+...-.++ ...+..+...+.+.|++++|.+.+++. +..++ ..++..+...+...|++++|...
T Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (338)
T 3ro2_A 206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 285 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8876542111111 236778888888999999998888765 11122 45677888889999999999999
Q ss_pred HHHHHhcCCCC------CcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 610 AEQLFQLMPHH------AGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 610 ~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
++++++..|.. ..++..++.+|...|++++|.+.+++..+
T Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 99998875443 34788999999999999999999999875
No 60
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.35 E-value=1.1e-11 Score=130.62 Aligned_cols=225 Identities=8% Similarity=0.056 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhcCCC---CCHhHHHHHHHHH
Q 003868 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV-VEAANCVFNTMPN---VDSVSWNAMIAAL 494 (790)
Q Consensus 419 ~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 494 (790)
..+..+...+...|++++|...+..+++.. +.+..+|+.+...|.+.|+ +++|...|+++.+ .+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 356667777888999999999999999875 5567889999999999997 9999999998864 4788999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHh-cCChH
Q 003868 495 GQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR-AGKFS 572 (790)
Q Consensus 495 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~ 572 (790)
...|++++|+..|+++++ +.|+. ..|..+..++...|++++|+..|+++.+. .+-+...|..+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999 56755 68888999999999999999999999863 34467889999999999 66668
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcC--------
Q 003868 573 EA-----KDVIDSL-PFKP-SAPIWEALLAGCRIHG--NIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLG-------- 635 (790)
Q Consensus 573 ~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 635 (790)
+| ++.+++. ...| +...|..+...+...| ++++|+..++++ +.+|+++..+..|+.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 88 4666664 3445 6778999999998888 689999999998 889999999999999999875
Q ss_pred -ChhHHHHHHHHH-Hh
Q 003868 636 -RWDDAARVRKLM-RD 649 (790)
Q Consensus 636 -~~~~a~~~~~~m-~~ 649 (790)
..++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999998 44
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.34 E-value=5.8e-12 Score=135.21 Aligned_cols=293 Identities=12% Similarity=-0.001 Sum_probs=181.6
Q ss_pred CChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--C-C----hhHHHHHHHHHHHcCCHHHHHHHHHHhccC---------C
Q 003868 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPE--R-D----LVSWNAILSAYVSAGLIDEAKSLFEAMRER---------N 382 (790)
Q Consensus 319 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~ 382 (790)
.....+..+...+.+.|++++|...|++..+ | + ...|..+...|...|++++|...|++..+. .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3455566667777777888888777776543 2 2 235666677777777777777776655321 1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCC--------------------hHHH
Q 003868 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF-KPC----DYAFAGAITSCAGLGA--------------------LENG 437 (790)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~--------------------~~~a 437 (790)
..+|..+...|...|++++|+..+++...... .++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 23556666666666666666666666543210 001 1233334444444444 3333
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-
Q 003868 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--VDSVSWNAMIAALGQHGNGARAIELYEQMLKEG- 514 (790)
Q Consensus 438 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 514 (790)
...+....+ ++..... ....+|..+...|...|++++|+..|++..+..
T Consensus 167 ~~~~~~al~----------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 167 VDFYEENLS----------------------------LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218 (406)
T ss_dssp HHHHHHHHH----------------------------HHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----------------------------HHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 333333221 1111111 123456677777788888888888887776421
Q ss_pred CCCCh----hhHHHHHHHHHccCCHHHHHHHHHHcccCC---CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC----C
Q 003868 515 ILPDR----ITFLTVLSACNHAGLVKEGRRYFETMHGPY---GIPP-GEDHYARFIDLLCRAGKFSEAKDVIDSL----P 582 (790)
Q Consensus 515 ~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~ 582 (790)
-.++. .++..+...+...|++++|..+++...+.. +..+ ...++..+...|.+.|++++|.+.+++. +
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 01221 267777778888888888888888765421 1111 1456778888889999999998888765 1
Q ss_pred CCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------CCcchHhhHHHHHhcCChhH
Q 003868 583 FKPS----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH------HAGTYVLLSNMYANLGRWDD 639 (790)
Q Consensus 583 ~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~ 639 (790)
..++ ..++..+...+...|++++|...+++++++.+. ...++..++.+|...|+...
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 1122 457788888999999999999999999887332 34577888888888887643
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.33 E-value=6.2e-12 Score=137.70 Aligned_cols=192 Identities=8% Similarity=-0.037 Sum_probs=152.5
Q ss_pred chhHHHHHHHHHHhcCCH-HHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 003868 452 SLSAGNALITMYARCGVV-EAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527 (790)
Q Consensus 452 ~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 527 (790)
+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++..+ +.|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHH
Confidence 444455555555555555 555555554432 2466778888888888888888888888887 5687777888888
Q ss_pred HHHcc---------CCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhc--------CChHHHHHHHHhC-CCCC----
Q 003868 528 ACNHA---------GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA--------GKFSEAKDVIDSL-PFKP---- 585 (790)
Q Consensus 528 a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~~-~~~p---- 585 (790)
++... |++++|...|+++.+. .+.+...|..+..+|... |++++|.+.|++. ...|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 88888 8999999999888763 344577888888888888 8899999999876 3344
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHH
Q 003868 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647 (790)
Q Consensus 586 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 647 (790)
+...|..+...+...|++++|+..++++++++|+++.++..++.++...|++++|.+.+.++
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77889999999999999999999999999999999999999999999999999999765443
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.30 E-value=2.1e-11 Score=131.32 Aligned_cols=271 Identities=13% Similarity=0.013 Sum_probs=184.1
Q ss_pred hhHHHHHHHHHHHCCCHHHHHHHHhhCCC--C-Ch----hHHHHHHHHHHHcCCHHHHHHHHHHhccC---------Chh
Q 003868 321 LPVNNALVTLYWKCGKVNEARDIFNQMPE--R-DL----VSWNAILSAYVSAGLIDEAKSLFEAMRER---------NLL 384 (790)
Q Consensus 321 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~ 384 (790)
...+..+...+...|++++|...|++..+ | +. ..|..+...|...|++++|...|++..+. ...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 44556677889999999999999998764 3 22 47888999999999999999999887642 236
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCC-----------------hHHHHHHHH
Q 003868 385 SWTVMISGLAQNGYGEEGLKLFSQMRLE----GFKP-CDYAFAGAITSCAGLGA-----------------LENGRQLHA 442 (790)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~-----------------~~~a~~i~~ 442 (790)
+|..+...|...|++++|+..|++.... +-.| ...++..+...+...|+ +++|...+.
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7889999999999999999999987653 1111 22355556666666666 555555554
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-
Q 003868 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI-LPD- 518 (790)
Q Consensus 443 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~- 518 (790)
+..+. +..... .....|..+...|...|++++|+..|++..+..- .++
T Consensus 208 ~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 208 ENLKL----------------------------MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHH----------------------------HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 43321 111111 0223555666667777777777777776654210 011
Q ss_pred ---hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCC----CChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCC
Q 003868 519 ---RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP----PGEDHYARFIDLLCRAGKFSEAKDVIDSL-------PFK 584 (790)
Q Consensus 519 ---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~ 584 (790)
..++..+...+...|++++|..++++..+...-. .....+..+...|.+.|++++|.+.+++. +..
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 1256667777777888888887777665421100 11456777888888888888888888765 111
Q ss_pred C-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 003868 585 P-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619 (790)
Q Consensus 585 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 619 (790)
+ ...++..+...+...|++++|...+++++++.+.
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 1 1346778888899999999999999999887653
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.27 E-value=7.9e-10 Score=113.64 Aligned_cols=219 Identities=11% Similarity=0.077 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------ccCCh-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 003868 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCA-------GLGAL-------ENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465 (790)
Q Consensus 400 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~g~~-------~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 465 (790)
++|+.+|++..... +-+...|..+...+. +.|++ ++|..+++++++.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666666666532 233444444444443 34665 7777777777774224455677788888888
Q ss_pred cCCHHHHHHHHhcCCC--C-CHh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHH-ccCCHHHHH
Q 003868 466 CGVVEAANCVFNTMPN--V-DSV-SWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACN-HAGLVKEGR 539 (790)
Q Consensus 466 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~-~~g~~~~a~ 539 (790)
.|++++|.++|+++.+ | +.. .|..++..+.+.|++++|..+|++..+. .|+. ..|........ ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888887654 3 333 7888888888888888888888888874 3433 34433333322 368888888
Q ss_pred HHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003868 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-P---FKP--SAPIWEALLAGCRIHGNIDLGIQAAEQL 613 (790)
Q Consensus 540 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 613 (790)
.+|+...+. .+.+...|..++..+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..+++++
T Consensus 190 ~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888763 3345677888888888888888888888876 1 344 4567888888888888888888888888
Q ss_pred HhcCCCCCcc
Q 003868 614 FQLMPHHAGT 623 (790)
Q Consensus 614 ~~~~p~~~~~ 623 (790)
++..|+++..
T Consensus 268 ~~~~p~~~~~ 277 (308)
T 2ond_A 268 FTAFREEYEG 277 (308)
T ss_dssp HHHTTTTTSS
T ss_pred HHHccccccc
Confidence 8888876533
No 65
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.27 E-value=5.3e-09 Score=117.56 Aligned_cols=399 Identities=11% Similarity=0.039 Sum_probs=273.7
Q ss_pred CchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCC---CCeeeHHHHHHHHHhCCC---hhHHHHHHHhcccCCc
Q 003868 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE---RDELSWTTMMTGYVKNDY---LDAAREFLDGMSENVG 256 (790)
Q Consensus 183 ~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~~~ 256 (790)
-|...|..++....+. +.++.++.+|+++.. .....|...+..-.+.|+ ++.+..+|++-.
T Consensus 64 ~d~~~W~~yi~~~~~~---------~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal---- 130 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSL---------KQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL---- 130 (679)
T ss_dssp TCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT----
T ss_pred CCHHHHHHHHHHHHhc---------CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH----
Confidence 5777788888887777 899999999998764 366779999999899999 999999999752
Q ss_pred chhhHHHHhhhhhHHHHHHhCc--cCChhhHHHHHHHHHccCCh--------HHHHHHHHHHHHhcCCCCC-CC-ChhHH
Q 003868 257 VAWNALISGYVHRELKMLMLRI--QLDEFTYTSVISACANSGLF--------RLGKQVHAYLLRTEAKPTP-EF-SLPVN 324 (790)
Q Consensus 257 ~~~~~li~~~~~~~~~m~~~~~--~p~~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~~~~~~~~-~~-~~~~~ 324 (790)
... .|+...|...+....+.++. +..+++|+.++.. .|. .+ +..+|
T Consensus 131 -------------------~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~---vG~~d~~s~~iW 188 (679)
T 4e6h_A 131 -------------------SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK---CAIFEPKSIQFW 188 (679)
T ss_dssp -------------------CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH---TTTTCSSCHHHH
T ss_pred -------------------HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---hCcccccchHHH
Confidence 122 37777777777766555443 3455788877753 344 33 35688
Q ss_pred HHHHHHHHH---------CCCHHHHHHHHhhCCC-CC---hhHHHH---HHHHH----------HHcCCHHHHHHHHHHh
Q 003868 325 NALVTLYWK---------CGKVNEARDIFNQMPE-RD---LVSWNA---ILSAY----------VSAGLIDEAKSLFEAM 378 (790)
Q Consensus 325 ~~li~~~~~---------~g~~~~A~~~f~~m~~-~~---~~~~~~---li~~~----------~~~g~~~~A~~~~~~m 378 (790)
...+..... .++++.+.++|++... |. ...|.. ....+ -....++.|...+.++
T Consensus 189 ~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~ 268 (679)
T 4e6h_A 189 NEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDW 268 (679)
T ss_dssp HHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHH
Confidence 888876542 3457889999998775 21 123322 21111 0011233444444432
Q ss_pred cc------C-----------------C------hhHHHHHHHHHHhcCC-------hHHHHHHHHHHHHcCCCCCHHHHH
Q 003868 379 RE------R-----------------N------LLSWTVMISGLAQNGY-------GEEGLKLFSQMRLEGFKPCDYAFA 422 (790)
Q Consensus 379 ~~------~-----------------~------~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~ 422 (790)
.+ + + ...|...+..--..+. .+.+..+|++.... ++-+...|.
T Consensus 269 ~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~ 347 (679)
T 4e6h_A 269 LNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWF 347 (679)
T ss_dssp HHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHH
T ss_pred HHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHH
Confidence 10 0 0 1345555554333321 23455678777765 344666676
Q ss_pred HHHHHHHccCChHHHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------------C------
Q 003868 423 GAITSCAGLGALENGR-QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN-------------V------ 482 (790)
Q Consensus 423 ~ll~~~~~~g~~~~a~-~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------------~------ 482 (790)
....-+...|+.+.|. ++++.++.. .+.+...+-.++..+.+.|+++.|.++|+.+.+ |
T Consensus 348 ~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~ 426 (679)
T 4e6h_A 348 NMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAI 426 (679)
T ss_dssp HHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhh
Confidence 7777777788888996 999999875 456777788899999999999999999987753 2
Q ss_pred ------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHcc-CCHHHHHHHHHHcccCCCCCCC
Q 003868 483 ------DSVSWNAMIAALGQHGNGARAIELYEQMLKE-GILPDRITFLTVLSACNHA-GLVKEGRRYFETMHGPYGIPPG 554 (790)
Q Consensus 483 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~ 554 (790)
....|...+....+.|+.+.|..+|.+..+. +. +....|......-.+. ++.+.|..+|+...+. .+.+
T Consensus 427 ~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~ 503 (679)
T 4e6h_A 427 NQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTC
T ss_pred hhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCc
Confidence 1236888888888889999999999999875 21 1223343322222233 5589999999998874 4445
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 003868 555 EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP----SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
...+...++.+.+.|+.+.|..+|++. ...| ....|...+..-..+|+.+.+..+.+++.+..|+++
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 667778888888999999999999986 2223 346899999999999999999999999999999874
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.25 E-value=7.1e-11 Score=122.69 Aligned_cols=265 Identities=13% Similarity=0.008 Sum_probs=155.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHhhCCC--C-C----hhHHHHHHHHHHHcCCHHHHHHHHHHhccC---------ChhHHH
Q 003868 324 NNALVTLYWKCGKVNEARDIFNQMPE--R-D----LVSWNAILSAYVSAGLIDEAKSLFEAMRER---------NLLSWT 387 (790)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~f~~m~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~~~~ 387 (790)
+......+...|++++|...|++..+ | + ...+..+...|...|++++|.+.+++..+. ...++.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 33445556666666666666666542 2 2 234555566666666666666665554321 123455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 003868 388 VMISGLAQNGYGEEGLKLFSQMRLEGF-KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466 (790)
Q Consensus 388 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 466 (790)
.+...|...|++++|+..+++...... .++.. ....++..+...|...
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~~ 136 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYHAK 136 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHHHc
Confidence 555555555555555555555433210 01100 0022344444455555
Q ss_pred CC--------------------HHHHHHHHhcCCC---------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-C
Q 003868 467 GV--------------------VEAANCVFNTMPN---------VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI-L 516 (790)
Q Consensus 467 g~--------------------~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~ 516 (790)
|+ +++|.+.+++... .....+..+...+...|++++|+..+++..+... .
T Consensus 137 ~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 55 5555544443321 1234566677777788888888888887764210 1
Q ss_pred CC----hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC----CCC
Q 003868 517 PD----RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG----EDHYARFIDLLCRAGKFSEAKDVIDSL----PFK 584 (790)
Q Consensus 517 p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~ 584 (790)
++ ..++..+...+...|++++|..+++...+...-.++ ...+..+...|...|++++|.+.+++. +..
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 11 126677777888888888888888876542111111 456777888889999999998888765 111
Q ss_pred CC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 003868 585 PS----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619 (790)
Q Consensus 585 p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 619 (790)
++ ..++..+...+...|++++|...+++++++.+.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 12 346778888999999999999999999988654
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.25 E-value=7.9e-11 Score=125.45 Aligned_cols=162 Identities=12% Similarity=0.046 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCh----hhHHHHHHHHHccCCHHHHHHHHHHcccC---CCC-CCChh
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGI-LPDR----ITFLTVLSACNHAGLVKEGRRYFETMHGP---YGI-PPGED 556 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~-~p~~~ 556 (790)
+++.+...|...|++++|+..|++..+..- .++. .++..+...|...|++++|..+|++..+. .+. +....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 444455555555555555555555443100 0111 24455555555555665555555554430 011 11234
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-C---C--CCC-HHHHHHHHHHHHHhCC---HHHHHHHHHHHHhcCCCCCcchHh
Q 003868 557 HYARFIDLLCRAGKFSEAKDVIDSL-P---F--KPS-APIWEALLAGCRIHGN---IDLGIQAAEQLFQLMPHHAGTYVL 626 (790)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~-~---~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~ 626 (790)
++..+...|.+.|++++|.+.+++. . . .|. ...+..+...+...|+ .++|+..+++. ...|.....+..
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 344 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 4555555566666666665555543 0 0 111 1123444444555555 44455444443 222223345566
Q ss_pred hHHHHHhcCChhHHHHHHHHHH
Q 003868 627 LSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 627 l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
|+.+|...|++++|.+.+++..
T Consensus 345 la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 6677777777777777666664
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.25 E-value=6.7e-11 Score=134.65 Aligned_cols=163 Identities=19% Similarity=0.243 Sum_probs=139.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHH
Q 003868 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF 561 (790)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 561 (790)
+..+|+.|...|.+.|++++|++.|++.++ +.|+. .++..+..++.+.|++++|++.|++..+. -+-+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 456788888888899999999999999888 56765 57888888899999999999999988752 23346788899
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhH
Q 003868 562 IDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639 (790)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 639 (790)
..+|.+.|++++|++.|++. .+.| +...|..+...+...|++++|+..++++++++|+++.+|..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999998876 4455 567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 003868 640 AARVRKLMRD 649 (790)
Q Consensus 640 a~~~~~~m~~ 649 (790)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887754
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.23 E-value=1e-10 Score=110.09 Aligned_cols=166 Identities=10% Similarity=0.006 Sum_probs=136.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHH
Q 003868 452 SLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLS 527 (790)
Q Consensus 452 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 527 (790)
+..+|..|...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+++.... .|+. ..+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 456777888888888888888888887653 36778888889999999999999999998874 4544 46666777
Q ss_pred HHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHH
Q 003868 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDL 605 (790)
Q Consensus 528 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 605 (790)
.+...++++.|...+....+ ..+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+...+...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88889999999999998876 33456778889999999999999999999876 3344 67789999999999999999
Q ss_pred HHHHHHHHHhcCCCCC
Q 003868 606 GIQAAEQLFQLMPHHA 621 (790)
Q Consensus 606 a~~~~~~~~~~~p~~~ 621 (790)
|+..++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999864
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.21 E-value=8.4e-10 Score=113.46 Aligned_cols=211 Identities=10% Similarity=0.012 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHhcCCC---C-CHhHHHHHHHHHHh
Q 003868 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYA-------RCGVV-------EAANCVFNTMPN---V-DSVSWNAMIAALGQ 496 (790)
Q Consensus 435 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 496 (790)
++|..+++++++.. +.+..+|..++..+. +.|++ ++|..+|++..+ | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67778888888763 566778888887776 35886 899999997654 3 56789999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHH-hcCChHH
Q 003868 497 HGNGARAIELYEQMLKEGILPDRI--TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC-RAGKFSE 573 (790)
Q Consensus 497 ~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~ 573 (790)
.|++++|..+|++..+ +.|+.. .|..+...+.+.|++++|..+|+++.+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 677654 7888889999999999999999999863 2344555554444422 3699999
Q ss_pred HHHHHHhC-CC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCC-CCcchHhhHHHHHhcCChhHHHHHHHHH
Q 003868 574 AKDVIDSL-PF-KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL---MPH-HAGTYVLLSNMYANLGRWDDAARVRKLM 647 (790)
Q Consensus 574 A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 647 (790)
|.++|++. .. +.+...|..++..+...|++++|..+|+++++. .|+ ....|..++..+.+.|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999886 22 236788999999999999999999999999996 443 5568888999999999999999999998
Q ss_pred HhC
Q 003868 648 RDR 650 (790)
Q Consensus 648 ~~~ 650 (790)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.19 E-value=5e-11 Score=122.56 Aligned_cols=172 Identities=12% Similarity=0.089 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhcc--------CC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHc------CC
Q 003868 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRE--------RN---LLSWTVMISGLAQNGYGEEGLKLFSQMRLE------GF 414 (790)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 414 (790)
..+|..+...|...|++++|...|+++.+ .+ ..++..+...|...|++++|+..|++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45677777778888887777777766654 11 235566666666666666666666665542 11
Q ss_pred CC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHH
Q 003868 415 KP-CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493 (790)
Q Consensus 415 ~p-~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 493 (790)
.| ...++..+...+...|++++|...+..+.+.... .+..-.......|..+...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------------------------~~~~~~~~~~~~~~~la~~ 162 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK------------------------VLGKDHPDVAKQLNNLALL 162 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH------------------------HHCTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH------------------------hcCCCChHHHHHHHHHHHH
Confidence 11 1223444444444445555555444444332000 0000000123345556666
Q ss_pred HHhcCChHHHHHHHHHHHHc------CCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHccc
Q 003868 494 LGQHGNGARAIELYEQMLKE------GILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHG 547 (790)
Q Consensus 494 ~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 547 (790)
+...|++++|++.|+++.+. +..|+. .++..+..++...|++++|..+++.+.+
T Consensus 163 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 163 CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666543 112222 3455566666667777777776666553
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.18 E-value=2.2e-11 Score=125.33 Aligned_cols=242 Identities=13% Similarity=0.092 Sum_probs=148.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHH
Q 003868 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLE-------GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456 (790)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~ 456 (790)
.+|..+...|...|++++|+.+|+++.+. ..+.....+..+...+...|++++|...+..+.+..
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------- 99 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR-------- 99 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------
Confidence 46777777777777777777777776652 112223344444455555555555555555443320
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCCh-hhHHHHHHHH
Q 003868 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE------GILPDR-ITFLTVLSAC 529 (790)
Q Consensus 457 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ll~a~ 529 (790)
.+.+..-......+|..+...|...|++++|+..|++..+. +-.|+. ..+..+...+
T Consensus 100 ----------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 163 (311)
T 3nf1_A 100 ----------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLC 163 (311)
T ss_dssp ----------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred ----------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 00000000013446677777888888888888888887763 222333 4677888899
Q ss_pred HccCCHHHHHHHHHHcccCC-----C-CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC----------CCCCH------
Q 003868 530 NHAGLVKEGRRYFETMHGPY-----G-IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP----------FKPSA------ 587 (790)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~~-----~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~p~~------ 587 (790)
...|++++|..+|+.+.+.. + .+.....+..+...|.+.|++++|.+.++++- ..+..
T Consensus 164 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 243 (311)
T 3nf1_A 164 QNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH 243 (311)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Confidence 99999999999999886520 1 12234578889999999999999999987751 11111
Q ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 588 -PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 588 -~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
..+..+...+...+.+.++...++++....|..+.++..++.+|...|++++|.+++++..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12222333344556666677778888888888889999999999999999999999998864
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.18 E-value=4.5e-10 Score=105.28 Aligned_cols=159 Identities=14% Similarity=0.053 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHH
Q 003868 455 AGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP-DRITFLTVLSACN 530 (790)
Q Consensus 455 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~ 530 (790)
.+..+...|...|++++|.+.|+++.+ .+...|..+...+...|++++|...++++.+. .| +...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 444555556666666666666665543 24445555555555566666666666555542 22 2233444444444
Q ss_pred ccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 003868 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610 (790)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 610 (790)
..|++++|.++++.+.+. .+.+...|..+...+...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~----------------------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA----------------------------------NPINFNVRFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH----------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc----------------------------------CcHhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 444444444444444321 1234455666666666667777777777
Q ss_pred HHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 611 EQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 611 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+++++..|+++..+..++.+|...|++++|.+.+++..+
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777666666666667777777777777777777666654
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.18 E-value=3.3e-10 Score=120.62 Aligned_cols=230 Identities=10% Similarity=-0.033 Sum_probs=156.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhC--C----CCchhHHH
Q 003868 389 MISGLAQNGYGEEGLKLFSQMRLE----GFKP-CDYAFAGAITSCAGLGALENGRQLHAQLVHSG--Y----DSSLSAGN 457 (790)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g--~----~~~~~~~~ 457 (790)
....+...|++++|+..|++.... +-.+ ...++..+...+...|+++.|...+..+.+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344455556666666666665542 1111 12345555556666666666666666655431 1 11234566
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCh-hhHH
Q 003868 458 ALITMYARCGVVEAANCVFNTMPN-----VD----SVSWNAMIAALGQHGNGARAIELYEQMLKE----GILPDR-ITFL 523 (790)
Q Consensus 458 ~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~ 523 (790)
.+...|...|++++|.+.|++..+ .+ ..+|..+...|...|++++|++.|++..+. +..|+. .++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777777778888877777766542 11 246778888899999999999999888762 232433 5788
Q ss_pred HHHHHHHccCCHHHHHHHHHHcccCC---CCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 003868 524 TVLSACNHAGLVKEGRRYFETMHGPY---GIPPGEDHYARFIDLLCRAGK---FSEAKDVIDSLPFKPSA-PIWEALLAG 596 (790)
Q Consensus 524 ~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~ll~~ 596 (790)
.+..++...|++++|..++++..+.. +.+.....+..+...|...|+ +++|..++++.+..|+. ..+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 88889999999999999998876421 112223345678888889998 89999999998655543 467788899
Q ss_pred HHHhCCHHHHHHHHHHHHhcCC
Q 003868 597 CRIHGNIDLGIQAAEQLFQLMP 618 (790)
Q Consensus 597 ~~~~g~~~~a~~~~~~~~~~~p 618 (790)
|...|++++|...+++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999987643
No 75
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.17 E-value=4.4e-08 Score=110.12 Aligned_cols=92 Identities=10% Similarity=0.038 Sum_probs=63.6
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCC---CChHHHHHHHHHHhcCCC---hHHHHHHHhhCCCC
Q 003868 37 VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ---PDIVARTTLIAAYSASDN---VKLAREMFNKTPLK 110 (790)
Q Consensus 37 ~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~ 110 (790)
.++.-+... +-|...+..++..+.+.+.++.++.+|+++.. .....|...+..-.+.|+ ++.+.++|++....
T Consensus 54 ~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~ 132 (679)
T 4e6h_A 54 KLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSK 132 (679)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHh
Confidence 344444443 45788888888888888888888888888765 345567777777777777 88888888876655
Q ss_pred C---CCcchHHHHHHHHHhCCC
Q 003868 111 M---RDTVFYNAMITAYSHNSN 129 (790)
Q Consensus 111 ~---~~~~~~n~li~~~~~~g~ 129 (790)
. |++..|...+....+.++
T Consensus 133 ~~~~~sv~LW~~Yl~f~~~~~~ 154 (679)
T 4e6h_A 133 ELGNNDLSLWLSYITYVRKKND 154 (679)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSC
T ss_pred cCCCCCHHHHHHHHHHHHHhcc
Confidence 3 777778777766555444
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.16 E-value=2e-09 Score=100.72 Aligned_cols=171 Identities=12% Similarity=0.036 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHH
Q 003868 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAAL 494 (790)
Q Consensus 418 ~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 494 (790)
...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|.+.|+++.+ .+...|..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456677788899999999999999887653 45678889999999999999999999998653 4678899999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHH
Q 003868 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574 (790)
Q Consensus 495 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 574 (790)
...|++++|.+.|+++.+.. +.+...+..+..++...|++++|..+++.+.+. .
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~----------------------- 140 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--R----------------------- 140 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C-----------------------
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--C-----------------------
Confidence 99999999999999998852 234456666666777777777777777765532 1
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcch
Q 003868 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624 (790)
Q Consensus 575 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 624 (790)
+.+...|..+...+...|++++|...++++++..|+++...
T Consensus 141 ---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 141 ---------PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL 181 (186)
T ss_dssp ---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGGG
T ss_pred ---------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhhH
Confidence 12345666777777777888888888888888777765443
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.15 E-value=3.2e-09 Score=112.68 Aligned_cols=228 Identities=7% Similarity=-0.070 Sum_probs=117.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHhC--CC----CchhH
Q 003868 387 TVMISGLAQNGYGEEGLKLFSQMRLEG-FKPC----DYAFAGAITSCAGLGALENGRQLHAQLVHSG--YD----SSLSA 455 (790)
Q Consensus 387 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g--~~----~~~~~ 455 (790)
......+...|++++|+..|++..... -.++ ..++..+...+...|+++.|...+..+.+.. .. ....+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 334555667788888888887776531 1122 2345556666677777777777776665431 11 11334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCChhhH
Q 003868 456 GNALITMYARCGVVEAANCVFNTMPN-----V----DSVSWNAMIAALGQHGNGARAIELYEQMLKE----GILPDRITF 522 (790)
Q Consensus 456 ~~~li~~y~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~ 522 (790)
++.+...|...|++++|.+.|++..+ . ...+++.+...|...|++++|++.|++..+. +......++
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 264 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence 55566666666666666665554432 1 1234555556666666666666666665541 111112345
Q ss_pred HHHHHHHHccCCHHHHHHHHHHcccCC---CCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHH
Q 003868 523 LTVLSACNHAGLVKEGRRYFETMHGPY---GIPPGEDHYARFIDLLCRAGK---FSEAKDVIDSLPFKPSA-PIWEALLA 595 (790)
Q Consensus 523 ~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~ll~ 595 (790)
..+..++.+.|++++|..++++..+.. +.+.....+..+...+...|+ +++|...+++.+..|+. ..+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 555556666666666666665544321 111112233444444445555 55555555554322222 23334444
Q ss_pred HHHHhCCHHHHHHHHHHHH
Q 003868 596 GCRIHGNIDLGIQAAEQLF 614 (790)
Q Consensus 596 ~~~~~g~~~~a~~~~~~~~ 614 (790)
.|...|++++|...+++++
T Consensus 345 ~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 4455555555555555444
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.14 E-value=1.2e-08 Score=107.86 Aligned_cols=193 Identities=12% Similarity=0.035 Sum_probs=109.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC----------C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--Chhh
Q 003868 457 NALITMYARCGVVEAANCVFNTMPN----------V-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL--P--DRIT 521 (790)
Q Consensus 457 ~~li~~y~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t 521 (790)
..+...|...|++++|...+++... + ....+..+...+...|++++|...+++.....-. | ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 4445555555555555555544321 1 1234445556666677777777777766553211 1 1134
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC-hhHHH----HHHHHHHhcCChHHHHHHHHhCC-CCCC-----HHHH
Q 003868 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG-EDHYA----RFIDLLCRAGKFSEAKDVIDSLP-FKPS-----APIW 590 (790)
Q Consensus 522 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~----~li~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~ 590 (790)
+..+...+...|++++|..+++.......-... ..... ..+..+...|++++|...+++.. ..|. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 555666666777777777777665432010011 11111 22334667777777777777652 1111 2245
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------CcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHH------AGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 591 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
..+...+...|++++|...++++++..+.. ...+..++.+|...|+.++|.+.+++..+
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 566677777788888888887776653221 13566777888888888888888777654
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.10 E-value=2.4e-09 Score=104.51 Aligned_cols=204 Identities=8% Similarity=0.043 Sum_probs=154.7
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHH
Q 003868 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIA 492 (790)
Q Consensus 416 p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 492 (790)
.|...+......+...|++++|...+..+++...+++...+..+...|.+.|++++|.+.|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 455777788888999999999999999999886546677777799999999999999999987653 35678888999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChh--------hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC---hhHHHHH
Q 003868 493 ALGQHGNGARAIELYEQMLKEGILPDRI--------TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG---EDHYARF 561 (790)
Q Consensus 493 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 561 (790)
.|...|++++|+..|++..+ ..|+.. .|..+...+...|++++|.+.|+.+.+ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 99999999999999999988 456543 466677778889999999999999885 3554 5677778
Q ss_pred HHHHHhcCCh--HHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHH
Q 003868 562 IDLLCRAGKF--SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631 (790)
Q Consensus 562 i~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 631 (790)
...|...|+. ++|..+. ..+...+.... ....+.+++|+..+++++++.|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 8888766543 3322221 22333343332 34556789999999999999999987776665543
No 80
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.08 E-value=8.5e-10 Score=120.66 Aligned_cols=176 Identities=10% Similarity=-0.011 Sum_probs=153.9
Q ss_pred HHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHH
Q 003868 469 VEAANCVFNTMP---NVDSVSWNAMIAALGQHGNG-ARAIELYEQMLKEGILPD-RITFLTVLSACNHAGLVKEGRRYFE 543 (790)
Q Consensus 469 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 543 (790)
++++.+.++... ..+...|..+...+...|++ ++|++.|++..+ ..|+ ...+..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555554432 24788899999999999999 999999999998 4566 4688999999999999999999999
Q ss_pred HcccCCCCCCChhHHHHHHHHHHhc---------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh--------CCHH
Q 003868 544 TMHGPYGIPPGEDHYARFIDLLCRA---------GKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIH--------GNID 604 (790)
Q Consensus 544 ~~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--------g~~~ 604 (790)
.+.+ +.|+...+..+...|... |++++|.+.+++. ...| +...|..+..++... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9985 467788899999999999 9999999999986 3344 678899999999998 9999
Q ss_pred HHHHHHHHHHhcCC---CCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 605 LGIQAAEQLFQLMP---HHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 605 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+|+..++++++++| +++..|..++.+|...|++++|.+.+++..+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999999876
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.08 E-value=2.2e-09 Score=104.86 Aligned_cols=185 Identities=10% Similarity=-0.043 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHH
Q 003868 454 SAGNALITMYARCGVVEAANCVFNTMPN----VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSA 528 (790)
Q Consensus 454 ~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a 528 (790)
..+..+...|.+.|++++|.+.|++..+ ++...|..+...+...|++++|+..|++..+ ..|+. ..+..+..+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHHH
Confidence 4444444445555555555555443321 3334444444444455555555555555444 33333 234444444
Q ss_pred HHccCCHHHHHHHHHHcccCCCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 003868 529 CNHAGLVKEGRRYFETMHGPYGIPPGE-------DHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS---APIWEALLAGC 597 (790)
Q Consensus 529 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~ 597 (790)
+...|++++|...|+...+. .+.+. ..|..+...+.+.|++++|.+.+++. ...|+ ...|..+...+
T Consensus 86 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 44555555555555544431 11122 22344444444444444444444443 23333 12333333333
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 598 RIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 598 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
... +...++++..+.+.+...|..+ .....+.+++|...+++..+
T Consensus 164 ~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 164 YNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 222 2223333333333332222211 22233444899999998876
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.06 E-value=2.6e-09 Score=113.35 Aligned_cols=225 Identities=10% Similarity=-0.007 Sum_probs=167.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhC--CC---CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----C-----CHhHHH
Q 003868 424 AITSCAGLGALENGRQLHAQLVHSG--YD---SSLSAGNALITMYARCGVVEAANCVFNTMPN-----V-----DSVSWN 488 (790)
Q Consensus 424 ll~~~~~~g~~~~a~~i~~~~~~~g--~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~-----~~~~~~ 488 (790)
....+...|++++|...+..+.+.. .. ....++..+...|...|+++.|...+++..+ + ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 3345678899999999999988642 11 1345788899999999999999888876532 1 245788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHccCCHHHHHHHHHHcccCC---CCCCChhHHHH
Q 003868 489 AMIAALGQHGNGARAIELYEQMLKEGI-LPD----RITFLTVLSACNHAGLVKEGRRYFETMHGPY---GIPPGEDHYAR 560 (790)
Q Consensus 489 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~ 560 (790)
.+...|...|++++|++.|++..+..- .++ ..++..+..++...|++++|..+|++..+.. +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 899999999999999999998876310 112 2467788889999999999999999887510 12223667888
Q ss_pred HHHHHHhcCChHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHHhCC---HHHHHHHHHHHHhcCCCCCcchHhhHHH
Q 003868 561 FIDLLCRAGKFSEAKDVIDSL----PF--KPS-APIWEALLAGCRIHGN---IDLGIQAAEQLFQLMPHHAGTYVLLSNM 630 (790)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 630 (790)
+...|.+.|++++|.+.+++. +. .|. ...+..+...+...++ +++|+..+++. ...|.....+..++..
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHH
Confidence 999999999999999999875 11 222 2345555566667777 67777777662 2223344677899999
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 003868 631 YANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 631 ~~~~g~~~~a~~~~~~m~~ 649 (790)
|...|++++|.+.+++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998754
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.04 E-value=1e-07 Score=100.78 Aligned_cols=259 Identities=8% Similarity=0.004 Sum_probs=147.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcc-----CCh----hHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC--CC-HHH
Q 003868 357 AILSAYVSAGLIDEAKSLFEAMRE-----RNL----LSWTVMISGLAQNGYGEEGLKLFSQMRLE----GFK--PC-DYA 420 (790)
Q Consensus 357 ~li~~~~~~g~~~~A~~~~~~m~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~t 420 (790)
.+...+...|++++|...+++..+ .+. .+++.+...+...|++++|...+++.... +.. |. ...
T Consensus 58 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 137 (373)
T 1hz4_A 58 VLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL 137 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHH
Confidence 334444445555555555544432 111 23455666677777788888877776542 211 21 233
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCh
Q 003868 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500 (790)
Q Consensus 421 ~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 500 (790)
+..+...+...|++++|...+....+..-..... ....+|..+...+...|++
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------------~~~~~~~~la~~~~~~g~~ 190 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ---------------------------QQLQCLAMLIQCSLARGDL 190 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG---------------------------GGHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH---------------------------HHHHHHHHHHHHHHHcCCH
Confidence 4445555666666666666666655432111000 0123455566667777888
Q ss_pred HHHHHHHHHHHHcCCCCCh-hhHH-----HHHHHHHccCCHHHHHHHHHHcccCCCCCC--ChhHHHHHHHHHHhcCChH
Q 003868 501 ARAIELYEQMLKEGILPDR-ITFL-----TVLSACNHAGLVKEGRRYFETMHGPYGIPP--GEDHYARFIDLLCRAGKFS 572 (790)
Q Consensus 501 ~~A~~~~~~m~~~g~~p~~-~t~~-----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~ 572 (790)
++|...+++.....-.++. ..+. ..+..+...|++++|..+++.........+ ....+..+...+...|+++
T Consensus 191 ~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 270 (373)
T 1hz4_A 191 DNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFE 270 (373)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHH
Confidence 8888888777653222221 1111 222346678888888888888775311111 1224567778888889999
Q ss_pred HHHHHHHhC-------CCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHH
Q 003868 573 EAKDVIDSL-------PFKPSA-PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVR 644 (790)
Q Consensus 573 ~A~~~~~~~-------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 644 (790)
+|.+.+++. +..++. ..+..+..++...|+.++|...+++++++.++.. ....+...| +....++
T Consensus 271 ~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g-----~~~~~~~~g--~~~~~ll 343 (373)
T 1hz4_A 271 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG-----FISHFVIEG--EAMAQQL 343 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC-----CCHHHHTTH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc-----HHHHHHHcc--HHHHHHH
Confidence 988888765 111122 2556667778889999999999999888754321 122233334 4555555
Q ss_pred HHHHh
Q 003868 645 KLMRD 649 (790)
Q Consensus 645 ~~m~~ 649 (790)
+.+..
T Consensus 344 ~~~~~ 348 (373)
T 1hz4_A 344 RQLIQ 348 (373)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55543
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.94 E-value=3.1e-09 Score=120.96 Aligned_cols=163 Identities=14% Similarity=0.137 Sum_probs=129.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHH
Q 003868 452 SLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLS 527 (790)
Q Consensus 452 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 527 (790)
+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++.++ +.|+. ..|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 456677777778888888888887776653 3567888888888888888888888888888 56765 57888888
Q ss_pred HHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHH
Q 003868 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDL 605 (790)
Q Consensus 528 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 605 (790)
++...|++++|++.|++..+. -+-+...|..+..+|.+.|++++|++.|++. .+.| +...|..+...+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 888889999999888888752 2335678888889999999999999888875 4455 46788888999999999999
Q ss_pred HHHHHHHHHhcCC
Q 003868 606 GIQAAEQLFQLMP 618 (790)
Q Consensus 606 a~~~~~~~~~~~p 618 (790)
|.+.+++++++.|
T Consensus 164 A~~~~~kal~l~~ 176 (723)
T 4gyw_A 164 YDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCh
Confidence 9999998887644
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.93 E-value=2e-08 Score=101.19 Aligned_cols=127 Identities=11% Similarity=0.072 Sum_probs=62.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----------
Q 003868 420 AFAGAITSCAGLGALENGRQLHAQLVHS------GY-DSSLSAGNALITMYARCGVVEAANCVFNTMPN----------- 481 (790)
Q Consensus 420 t~~~ll~~~~~~g~~~~a~~i~~~~~~~------g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----------- 481 (790)
++..+...+...|++++|...+..+.+. +. +....++..+...|...|++++|.+.|++..+
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444444445555555444444432 11 11223344444444455555544444443321
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcc
Q 003868 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKE------GILPDR-ITFLTVLSACNHAGLVKEGRRYFETMH 546 (790)
Q Consensus 482 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 546 (790)
....+|..+...|...|++++|+..|++..+. +-.|+. .++..+..++...|++++|..+++.+.
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12334555566666666666666666665542 112222 345556666666666666666666554
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.92 E-value=5.3e-08 Score=97.18 Aligned_cols=203 Identities=12% Similarity=0.016 Sum_probs=128.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C---HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hh
Q 003868 452 SLSAGNALITMYARCGVVEAANCVFNTMPN--V-D---SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR----IT 521 (790)
Q Consensus 452 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t 521 (790)
+...+..+...+.+.|++++|...|+.+.+ | + ...|..+..+|.+.|++++|+..|++..+. .|+. ..
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHH
Confidence 445555566666677777777777766543 2 2 455666666677777777777777776663 3322 23
Q ss_pred HHHHHHHHHc--------cCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 003868 522 FLTVLSACNH--------AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEAL 593 (790)
Q Consensus 522 ~~~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 593 (790)
+..+..++.. .|++++|...|+.+.+.+ +.+......+.......+.+ ...+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~l 154 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 4455555555 666777777776666431 11122222211111000000 1124667
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCC---cchHhhHHHHHhc----------CChhHHHHHHHHHHhCCCccCCceeE
Q 003868 594 LAGCRIHGNIDLGIQAAEQLFQLMPHHA---GTYVLLSNMYANL----------GRWDDAARVRKLMRDRGVKKEPGCSW 660 (790)
Q Consensus 594 l~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~s~ 660 (790)
...+...|+++.|+..++++++..|+++ ..+..++.+|... |++++|.+.++++.+.. |
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----p---- 226 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----P---- 226 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----T----
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----C----
Confidence 7888999999999999999999999854 5788999999877 99999999999987532 2
Q ss_pred EEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHHHH
Q 003868 661 IEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRK 696 (790)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 696 (790)
.+|...+....+.++...+.+
T Consensus 227 ---------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ---------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ---------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CChHHHHHHHHHHHHHHHHHH
Confidence 245556666677777666654
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.91 E-value=6.9e-09 Score=104.59 Aligned_cols=221 Identities=16% Similarity=0.173 Sum_probs=150.2
Q ss_pred HccCChHHHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----------CCHhHHHHH
Q 003868 429 AGLGALENGRQLHAQLVHS-------GYDSSLSAGNALITMYARCGVVEAANCVFNTMPN-----------VDSVSWNAM 490 (790)
Q Consensus 429 ~~~g~~~~a~~i~~~~~~~-------g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l 490 (790)
...|++++|...+++..+. ..+....++..+...|...|++++|...|+++.+ ....+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888877653 2233466788889999999999999988886542 134578888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc------CCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHcccCC-----C-CCCChhH
Q 003868 491 IAALGQHGNGARAIELYEQMLKE------GILPD-RITFLTVLSACNHAGLVKEGRRYFETMHGPY-----G-IPPGEDH 557 (790)
Q Consensus 491 i~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~-~~p~~~~ 557 (790)
...|...|++++|+..|++..+. .-.|+ ..++..+...+...|++++|..+|+++.+.. . .+.....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88999999999999999988763 11233 3467788888899999999999998876520 1 1223567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC----------CCC-CHHHHHHHHHHHHHhCC------HHHHHHHHHHHHhcCCCC
Q 003868 558 YARFIDLLCRAGKFSEAKDVIDSLP----------FKP-SAPIWEALLAGCRIHGN------IDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~~~----------~~p-~~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~p~~ 620 (790)
+..+...|.+.|++++|.+.+++.- ..+ ....|..+.......+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 7788888999999999998887651 122 22234444333333222 222222222222233445
Q ss_pred CcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 621 AGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
..++..++.+|...|++++|.+++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67889999999999999999999998865
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.91 E-value=1.3e-08 Score=103.65 Aligned_cols=68 Identities=12% Similarity=-0.027 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCChHHHHHHHH
Q 003868 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE----GFKPC-DYAFAGAITSCAGLGALENGRQLHA 442 (790)
Q Consensus 368 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~i~~ 442 (790)
+++|...|++. +..|...|++++|+..|++.... |-+++ ..+|..+..++...|++++|...+.
T Consensus 33 ~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 101 (292)
T 1qqe_A 33 FEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE 101 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 56666655543 55666677777777766665432 21111 2355555556666666666666655
Q ss_pred HHHH
Q 003868 443 QLVH 446 (790)
Q Consensus 443 ~~~~ 446 (790)
.+++
T Consensus 102 ~Al~ 105 (292)
T 1qqe_A 102 NAIQ 105 (292)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.83 E-value=1e-07 Score=92.63 Aligned_cols=182 Identities=12% Similarity=0.047 Sum_probs=121.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh----hH
Q 003868 453 LSAGNALITMYARCGVVEAANCVFNTMPN--VD----SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI----TF 522 (790)
Q Consensus 453 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~ 522 (790)
...+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+ ..|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHHH
Confidence 34455566778888888888888887653 32 24677778888888888888888888887 355543 33
Q ss_pred HHHHHHHHc------------------cCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 003868 523 LTVLSACNH------------------AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584 (790)
Q Consensus 523 ~~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 584 (790)
..+..++.. .|+.++|...|+.+.+.+ +-+...+..+... +.+....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----~~~~~~~--------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----VFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----HHHHHHH---------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----HHHHHHH---------
Confidence 444444443 456677777777666532 1112222111110 0000000
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC---cchHhhHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003868 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA---GTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653 (790)
Q Consensus 585 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 653 (790)
......+...+...|+++.|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01123456678899999999999999999999986 57899999999999999999999999876553
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.83 E-value=4.1e-08 Score=86.05 Aligned_cols=129 Identities=22% Similarity=0.295 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHH
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLL 565 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 565 (790)
.|..+...+...|++++|+.+|+++.+.. ..+...+..+...+...|++++|..+++.+.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------- 64 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------- 64 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Confidence 34555556666666666666666665531 112334444444455555555555555544331
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHH
Q 003868 566 CRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645 (790)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 645 (790)
.+.+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.++
T Consensus 65 -----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 65 -----------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp -----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -----------------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 122344555666666666666777777777666666666666677777777777777777776
Q ss_pred HHHh
Q 003868 646 LMRD 649 (790)
Q Consensus 646 ~m~~ 649 (790)
++.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6654
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.83 E-value=2.8e-09 Score=96.25 Aligned_cols=140 Identities=11% Similarity=0.006 Sum_probs=93.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCCh
Q 003868 493 ALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571 (790)
Q Consensus 493 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 571 (790)
.+...|+.++|+..+++... ..|+. ..+..+...|...|++++|.+.|++..+. .+-+...|..+..+|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 34445666666666666544 23333 34555666677777777777777766642 233466677777777777777
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHH-HHHHHhcCCCCCcchHhhHHHHHhcCC
Q 003868 572 SEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQA-AEQLFQLMPHHAGTYVLLSNMYANLGR 636 (790)
Q Consensus 572 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 636 (790)
++|...|++. .+.| +..+|..+...+...|+.++|.+. ++++++++|+++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777777665 3344 466777888888888887665544 588888888888888888887777764
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.83 E-value=1.5e-07 Score=93.88 Aligned_cols=178 Identities=13% Similarity=0.065 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003868 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN-----VDSVSWNAMIAALGQHGNGARAIELYEQML 511 (790)
Q Consensus 437 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 511 (790)
+...++.....+ .++......+..+|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444443 23334444666666667777777777666522 244556666777777777777777777777
Q ss_pred HcCCCC-----ChhhHHHHHHHH--HccC--CHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 003868 512 KEGILP-----DRITFLTVLSAC--NHAG--LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582 (790)
Q Consensus 512 ~~g~~p-----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 582 (790)
+ ..| +..+...+..++ ...| ++.+|..+|+++.+. .|+......+..++.+.|++++|++.++.+.
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6 456 245555555552 2223 677777777777653 3442222333336677777777777765431
Q ss_pred -C----------CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc
Q 003868 583 -F----------KP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622 (790)
Q Consensus 583 -~----------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 622 (790)
. .| |+.+...++......|+ .|.++++++.+..|+++.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 1 13 33444455555555565 667777777777777753
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.82 E-value=5.3e-08 Score=97.13 Aligned_cols=203 Identities=10% Similarity=0.071 Sum_probs=145.0
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C----CHhH
Q 003868 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS---LSAGNALITMYARCGVVEAANCVFNTMPN--V----DSVS 486 (790)
Q Consensus 416 p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~----~~~~ 486 (790)
.+...+-.....+.+.|++++|...+..+++.. +.+ ...+..+...|.+.|++++|...|++..+ | ....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 455667777888899999999999999999874 223 66788899999999999999999998753 2 2456
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHH
Q 003868 487 WNAMIAALGQ--------HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558 (790)
Q Consensus 487 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 558 (790)
+..+..++.. .|++++|+..|++..+ ..|+........ ..+..+... ....+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~-------------~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDAT-------------QKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHH-------------HHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHH-------------HHHHHHHHH-----HHHHH
Confidence 7778888888 9999999999999998 457653221111 111111100 01225
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHhcCCCCCc-
Q 003868 559 ARFIDLLCRAGKFSEAKDVIDSL----PFKP-SAPIWEALLAGCRIH----------GNIDLGIQAAEQLFQLMPHHAG- 622 (790)
Q Consensus 559 ~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~- 622 (790)
..+...|.+.|++++|...|++. |..+ ....+..+..++... |++++|+..++++++..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 56777888889999998888775 2222 234677777777755 8999999999999999999853
Q ss_pred --chHhhHHHHHhcCChhH
Q 003868 623 --TYVLLSNMYANLGRWDD 639 (790)
Q Consensus 623 --~~~~l~~~~~~~g~~~~ 639 (790)
++..+..++...|++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 44455555555555443
No 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.82 E-value=7.7e-08 Score=97.41 Aligned_cols=172 Identities=10% Similarity=-0.011 Sum_probs=137.8
Q ss_pred HHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCC
Q 003868 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550 (790)
Q Consensus 472 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 550 (790)
..+.+......+...+..+...+.+.|++++|+..|++..+ ..|+. ..+..+..++...|++++|...++.+...
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 33344433334556677788888999999999999999998 56755 57888888999999999999999998753
Q ss_pred CCCChhHHHH-HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC--CcchH
Q 003868 551 IPPGEDHYAR-FIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH--AGTYV 625 (790)
Q Consensus 551 ~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~ 625 (790)
.|+...... ....+.+.++.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ ...+.
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 455443332 333467788888898888775 3334 67889999999999999999999999999999998 78999
Q ss_pred hhHHHHHhcCChhHHHHHHHHHH
Q 003868 626 LLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 626 ~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
.|+.+|...|+.++|...+++..
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999998887754
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.81 E-value=2.8e-07 Score=91.84 Aligned_cols=174 Identities=9% Similarity=-0.006 Sum_probs=134.1
Q ss_pred HHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHccc
Q 003868 472 ANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHG 547 (790)
Q Consensus 472 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 547 (790)
|...|++... ++..++..+..++...|++++|++++.+.+..|-.++. ..+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5666766542 45666678889999999999999999998775432333 5677888899999999999999999975
Q ss_pred CCCCCC-----ChhHHHHHHHH--HHhcC--ChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-
Q 003868 548 PYGIPP-----GEDHYARFIDL--LCRAG--KFSEAKDVIDSLP-FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL- 616 (790)
Q Consensus 548 ~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 616 (790)
..| +..+...|..+ ....| +.++|..+|+++. ..|+...-..+++++...|++++|+..++.+.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 366 24555555555 33334 9999999999983 3455333445555788999999999999988776
Q ss_pred ---------CCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 617 ---------MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 617 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
+|+|+.++..++.+....|+ +|.++++++++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 48899999888888888887 899999999873
No 96
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.81 E-value=4.9e-07 Score=91.80 Aligned_cols=202 Identities=14% Similarity=0.086 Sum_probs=130.2
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccC-----C----hhHHHHHHHHHHhcCChHHHHHHH
Q 003868 336 KVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER-----N----LLSWTVMISGLAQNGYGEEGLKLF 406 (790)
Q Consensus 336 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~ 406 (790)
++++|...|+.. ...|...|++++|.+.|++..+- + ..+|+.+...|.+.|++++|+..|
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 488888776653 66788899999999988877541 2 357889999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-CCHHHHHHHHhcCCC--C-
Q 003868 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC-GVVEAANCVFNTMPN--V- 482 (790)
Q Consensus 407 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~-g~~~~A~~~~~~~~~--~- 482 (790)
++.... +...|+...+ ..+++.+...|... |++++|...|++..+ +
T Consensus 101 ~~Al~l---------------~~~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~ 150 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ 150 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---------------HHHcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Confidence 887652 1112222211 12334455555554 666666666555432 0
Q ss_pred --C----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh------hHHHHHHHHHccCCHHHHHHHHHHcccCCC
Q 003868 483 --D----SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI------TFLTVLSACNHAGLVKEGRRYFETMHGPYG 550 (790)
Q Consensus 483 --~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 550 (790)
+ ..+|+.+...+.+.|++++|+..|++..+........ .|..+..++...|++++|...|++..+
T Consensus 151 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--- 227 (292)
T 1qqe_A 151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--- 227 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---
T ss_pred CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---
Confidence 1 3457777888888888888888888888742221111 456666777888888888888888764
Q ss_pred CCCChh------HHHHHHHHHH--hcCChHHHHHHHHhC
Q 003868 551 IPPGED------HYARFIDLLC--RAGKFSEAKDVIDSL 581 (790)
Q Consensus 551 ~~p~~~------~~~~li~~~~--~~g~~~~A~~~~~~~ 581 (790)
+.|+.. .+..++..+. ..+++++|.+.|+++
T Consensus 228 l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 228 EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 233311 2334445553 456677888877765
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.80 E-value=1.1e-07 Score=83.11 Aligned_cols=122 Identities=17% Similarity=0.226 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc
Q 003868 455 AGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531 (790)
Q Consensus 455 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 531 (790)
.+..+...|...|++++|..+|+++.+ .+...|..+...+...|++++|...|+++.+.+ ..+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 567889999999999999999998753 467889999999999999999999999998853 2344567777777888
Q ss_pred cCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 003868 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579 (790)
Q Consensus 532 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 579 (790)
.|++++|..+++.+.+. .+.+...+..+...+.+.|++++|.+.++
T Consensus 82 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 88888888888776642 12233344444444444444444444443
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.74 E-value=2.2e-08 Score=90.22 Aligned_cols=122 Identities=13% Similarity=0.059 Sum_probs=101.8
Q ss_pred HHHHHHccCCHHHHHHHHHHcccCCCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhC
Q 003868 525 VLSACNHAGLVKEGRRYFETMHGPYGIPP-GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHG 601 (790)
Q Consensus 525 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 601 (790)
|...+...|++++|+..++..... .| +...+-.+...|.+.|++++|++.|++. ...| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~---~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS---PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS---HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 344556778999999999988752 34 3456678899999999999999999986 4445 6789999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHH-HHHHHh
Q 003868 602 NIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARV-RKLMRD 649 (790)
Q Consensus 602 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 649 (790)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987765 477654
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.73 E-value=2.2e-08 Score=114.64 Aligned_cols=168 Identities=10% Similarity=-0.043 Sum_probs=97.4
Q ss_pred HhcCCHHHHHHHHhcCC-----------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHc
Q 003868 464 ARCGVVEAANCVFNTMP-----------NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNH 531 (790)
Q Consensus 464 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~ 531 (790)
...|++++|.+.|++.. ..+...|..+...+.+.|++++|++.|++..+ ..|+. ..+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 44555555555555443 12444555566666666666666666666665 34433 455555566666
Q ss_pred cCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Q 003868 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQA 609 (790)
Q Consensus 532 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 609 (790)
.|++++|.+.|+++.+. .+.+...|..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666542 22244556666666666666666 6666554 2233 445666666666666667667666
Q ss_pred HHHHHhcCCCCCcchHhhHHHHHhcCC
Q 003868 610 AEQLFQLMPHHAGTYVLLSNMYANLGR 636 (790)
Q Consensus 610 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 636 (790)
++++++++|++..++..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 666666666666666666666655444
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.70 E-value=1.4e-07 Score=87.54 Aligned_cols=156 Identities=12% Similarity=0.062 Sum_probs=102.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHH-HH
Q 003868 489 AMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL-LC 566 (790)
Q Consensus 489 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~ 566 (790)
.+...+.+.|++++|+..|++..+ ..|+. ..+..+..++...|++++|...|+.+.+. .|+...+..+... +.
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHH
Confidence 344455566666666666666554 33433 35555556666666666666666666542 2233222222111 11
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC--CcchHhhHHHHHhcCChhHHHH
Q 003868 567 RAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH--AGTYVLLSNMYANLGRWDDAAR 642 (790)
Q Consensus 567 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~ 642 (790)
+.+...+|.+.+++. ...| +...|..+...+...|++++|+..++++++.+|+. +..+..++.+|...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 222333456666554 2344 57788999999999999999999999999999875 5589999999999999999999
Q ss_pred HHHHHHh
Q 003868 643 VRKLMRD 649 (790)
Q Consensus 643 ~~~~m~~ 649 (790)
.+++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887653
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.70 E-value=3.5e-07 Score=87.85 Aligned_cols=161 Identities=10% Similarity=-0.056 Sum_probs=119.0
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC----CHHHHHHHHHHcccCCCCCCChhHH
Q 003868 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG----LVKEGRRYFETMHGPYGIPPGEDHY 558 (790)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~~ 558 (790)
++.++..+...|...+++++|++.|++..+.| +...+..+...|.. + +.++|..+|+...+. -+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 55566666666767777777777777777654 44555556666666 5 778888888777653 245566
Q ss_pred HHHHHHHHh----cCChHHHHHHHHhCC-CCCC---HHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCCcchHh
Q 003868 559 ARFIDLLCR----AGKFSEAKDVIDSLP-FKPS---APIWEALLAGCRI----HGNIDLGIQAAEQLFQLMPHHAGTYVL 626 (790)
Q Consensus 559 ~~li~~~~~----~g~~~~A~~~~~~~~-~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~ 626 (790)
..|..+|.. .+++++|.+.|++.- ..|. +..+..|...|.. .++.++|+..++++.+. |.++.++..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 677777766 778888888888763 3332 6778888888877 78999999999999988 677788999
Q ss_pred hHHHHHhc-C-----ChhHHHHHHHHHHhCCC
Q 003868 627 LSNMYANL-G-----RWDDAARVRKLMRDRGV 652 (790)
Q Consensus 627 l~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 652 (790)
|+.+|... | ++++|.+++++..+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999764 3 89999999999887664
No 102
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.70 E-value=4.7e-06 Score=90.86 Aligned_cols=320 Identities=9% Similarity=0.015 Sum_probs=142.9
Q ss_pred cCChhhHHHHHHHHHccCC-hHHHHHHHHHHHHhcCCCCC-CCChhHHHHHHHHHH----HCCCHHHHHHHHhhCCC-CC
Q 003868 279 QLDEFTYTSVISACANSGL-FRLGKQVHAYLLRTEAKPTP-EFSLPVNNALVTLYW----KCGKVNEARDIFNQMPE-RD 351 (790)
Q Consensus 279 ~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~----~~g~~~~A~~~f~~m~~-~~ 351 (790)
.|+...|...+....+.++ .+....+|+.++.. .|. ..+..+|...+..+. ..|+++.+.++|++... |.
T Consensus 44 ~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~---vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~ 120 (493)
T 2uy1_A 44 SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQ---FENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPM 120 (493)
T ss_dssp CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHH---STTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCC
T ss_pred CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH---cCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChh
Confidence 4566666666665555442 34455666666542 232 224556666555443 23456667777766543 21
Q ss_pred --h-hHHHHHHHHHH-------------HcCCHHHHHHHHHHhcc----CChhHHHHHHHHHHhcC--C-----hHHHHH
Q 003868 352 --L-VSWNAILSAYV-------------SAGLIDEAKSLFEAMRE----RNLLSWTVMISGLAQNG--Y-----GEEGLK 404 (790)
Q Consensus 352 --~-~~~~~li~~~~-------------~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g--~-----~~~A~~ 404 (790)
. ..|......-. ..+.+..|...++.+.. .+...|...+..-...+ - .+.+..
T Consensus 121 ~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~ 200 (493)
T 2uy1_A 121 GSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHF 200 (493)
T ss_dssp TTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHH
Confidence 1 11221111000 00122233333333221 13335555444432221 1 234567
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH-HHHHhcCC---
Q 003868 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA-NCVFNTMP--- 480 (790)
Q Consensus 405 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A-~~~~~~~~--- 480 (790)
+|+++.... +.+...|...+.-+.+.|+.+.|..+++.+++. +.+...+.. |+...+.++. ..+.+...
T Consensus 201 ~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~ 273 (493)
T 2uy1_A 201 IHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGE 273 (493)
T ss_dssp HHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC---
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhc
Confidence 787777643 444566666666677788888888888888887 444433332 2222111111 11111100
Q ss_pred ---------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-ccCCHHHHHHHHHHcccCCC
Q 003868 481 ---------NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN-HAGLVKEGRRYFETMHGPYG 550 (790)
Q Consensus 481 ---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~~~~~~~ 550 (790)
......|...+....+.++.+.|..+|++. +.. .++...|......-. ..++.+.|..+|+...+.++
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~ 351 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP 351 (493)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT
T ss_pred cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC
Confidence 001123444444444455555555555555 210 111122221111111 12245555555555554321
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 003868 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614 (790)
Q Consensus 551 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 614 (790)
.+...+...++...+.|+.+.|..+|++.. .....|...+..-..+|+.+.+..++++..
T Consensus 352 --~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 352 --DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp --TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 122334444555555555555555555542 234445555544445555555544444443
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.68 E-value=1.5e-07 Score=105.72 Aligned_cols=159 Identities=13% Similarity=0.027 Sum_probs=125.2
Q ss_pred cCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHH
Q 003868 466 CGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRY 541 (790)
Q Consensus 466 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~ 541 (790)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+ ..|+. ..+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998865 3678899999999999999999999999998 56654 6788888999999999999999
Q ss_pred HHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh---CCHHHHHHHHHHHHhc
Q 003868 542 FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIH---GNIDLGIQAAEQLFQL 616 (790)
Q Consensus 542 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 616 (790)
+++..+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|.+.++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9998863 3445788999999999999999999999886 3334 577889999999999 9999999999999999
Q ss_pred CCCCCcchHhhH
Q 003868 617 MPHHAGTYVLLS 628 (790)
Q Consensus 617 ~p~~~~~~~~l~ 628 (790)
+|++...|..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988888776
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.65 E-value=1.5e-07 Score=96.39 Aligned_cols=179 Identities=11% Similarity=0.070 Sum_probs=119.8
Q ss_pred HHHHhcCCHHHHHHHHhcCCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--hhhHHHHH
Q 003868 461 TMYARCGVVEAANCVFNTMPN-----V----DSVSWNAMIAALGQHGNGARAIELYEQMLKEGI---LPD--RITFLTVL 526 (790)
Q Consensus 461 ~~y~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll 526 (790)
..|...|++++|...|.+..+ . -..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345556666666665554432 1 134677778888888888888888887765211 121 24667777
Q ss_pred HHHHccCCHHHHHHHHHHcccCC---CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HHHHHHHH
Q 003868 527 SACNHAGLVKEGRRYFETMHGPY---GIPP-GEDHYARFIDLLCRAGKFSEAKDVIDSLP----FKPS----APIWEALL 594 (790)
Q Consensus 527 ~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll 594 (790)
..|.. |++++|+.+|++..+.+ +..+ ...++..+...|.+.|++++|.+.|++.- ..++ ...+..+.
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 78877 99999999988876421 1111 14577888899999999999999988751 1122 22566666
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCCcc-----hHhhHHHHHhcCChhHHHH
Q 003868 595 AGCRIHGNIDLGIQAAEQLFQLMPHHAGT-----YVLLSNMYANLGRWDDAAR 642 (790)
Q Consensus 595 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 642 (790)
..+...|+++.|...+++++ +.|....+ ...++..| ..|+.+.+.+
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 77778899999999999999 98876543 33445545 5677665555
No 105
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.62 E-value=1.2e-07 Score=85.02 Aligned_cols=96 Identities=14% Similarity=0.097 Sum_probs=85.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHH
Q 003868 554 GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631 (790)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 631 (790)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4566777888899999999999999876 2334 7788999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHh
Q 003868 632 ANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 632 ~~~g~~~~a~~~~~~m~~ 649 (790)
...|++++|.+.+++..+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999999865
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.62 E-value=3.9e-07 Score=102.27 Aligned_cols=145 Identities=12% Similarity=0.000 Sum_probs=81.3
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHH
Q 003868 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYE 508 (790)
Q Consensus 432 g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 508 (790)
|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 56666666666665542 33455666667777777777777777765543 245566666677777777777777777
Q ss_pred HHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhc---CChHHHHHHHHhC
Q 003868 509 QMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA---GKFSEAKDVIDSL 581 (790)
Q Consensus 509 ~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 581 (790)
+..+. .|+. ..+..+..++...|++++|.+.|++..+. .+.+...+..+...+... |+.++|.+.+++.
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 76663 4443 45666666667777777777777766642 233455666666666666 7777777666654
No 107
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.61 E-value=2.3e-07 Score=83.15 Aligned_cols=101 Identities=15% Similarity=0.072 Sum_probs=88.8
Q ss_pred CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHh
Q 003868 550 GIPPG-EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626 (790)
Q Consensus 550 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 626 (790)
.+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34443 456778888899999999999999886 3344 67899999999999999999999999999999999999999
Q ss_pred hHHHHHhcCChhHHHHHHHHHHhC
Q 003868 627 LSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 627 l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
++.+|...|++++|.+.+++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999763
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.61 E-value=4.5e-07 Score=103.69 Aligned_cols=189 Identities=13% Similarity=0.046 Sum_probs=140.1
Q ss_pred HccCChHHHHHHHHHHHH-------hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcC
Q 003868 429 AGLGALENGRQLHAQLVH-------SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHG 498 (790)
Q Consensus 429 ~~~g~~~~a~~i~~~~~~-------~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 498 (790)
...|++++|.+.++.+.+ ...+.+...+..+...|.+.|++++|.+.|+++.+ .+...|..+...|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 667888888888888771 12245567788888888889999999998887764 46778888899999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 003868 499 NGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577 (790)
Q Consensus 499 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 577 (790)
++++|++.|++..+ ..|+. ..+..+..++...|++++ .+.|+++.+. .+.+...|..+..+|.+.|++++|.+.
T Consensus 482 ~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 482 DYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp CHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999988 56755 577888888999999999 9999988752 344567888999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHHhCC-----HHHHHHHHHHHHhcCCCCCc
Q 003868 578 IDSL-PFKPS-APIWEALLAGCRIHGN-----IDLGIQAAEQLFQLMPHHAG 622 (790)
Q Consensus 578 ~~~~-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~ 622 (790)
|++. ...|+ ...|..+..++...++ .+...++.+.+..+.+.++.
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 9987 46675 4567777777766555 23344444444444444444
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.60 E-value=3.3e-07 Score=87.77 Aligned_cols=128 Identities=10% Similarity=0.057 Sum_probs=92.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHH
Q 003868 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566 (790)
Q Consensus 488 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 566 (790)
+.+...|.+.|++++|+..|++..+ ..|+. ..+..+..++...|++++|...|+++.+. -+.+...+..+...|.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 3477888888999999999988888 45654 57778888888889999999999888762 3445677888888776
Q ss_pred hcCC--hHHHHHHHHhCCCCCCHH--HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 003868 567 RAGK--FSEAKDVIDSLPFKPSAP--IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 567 ~~g~--~~~A~~~~~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 620 (790)
..|. .+.+...++... .|+.. .|..+..++...|++++|+..+++++++.|++
T Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6554 344556666553 34433 34445556677788999999999999988864
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.57 E-value=1.1e-06 Score=85.11 Aligned_cols=186 Identities=7% Similarity=-0.047 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-H---hHHHH
Q 003868 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS--SLSAGNALITMYARCGVVEAANCVFNTMPN--VD-S---VSWNA 489 (790)
Q Consensus 418 ~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~ 489 (790)
...+......+.+.|++++|...++.+++..... ....+..+..+|.+.|++++|...|++..+ |+ . ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3445566677889999999999999999864221 235778889999999999999999998753 32 1 24555
Q ss_pred HHHHHHh------------------cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCC
Q 003868 490 MIAALGQ------------------HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551 (790)
Q Consensus 490 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 551 (790)
+..++.. .|+.++|+..|+++.+ ..|+........ ...+ .+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~---~~l~------~~~~~~------ 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDAT---KRLV------FLKDRL------ 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHH---HHHH------HHHHHH------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHH---HHHH------HHHHHH------
Confidence 5555543 5789999999999998 567764321111 1100 011111
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcc
Q 003868 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623 (790)
Q Consensus 552 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 623 (790)
......+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|+..++++....|++...
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 112235677889999999999999876 22333 2468888999999999999999999999988887554
No 111
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.55 E-value=5.6e-06 Score=83.90 Aligned_cols=161 Identities=6% Similarity=-0.063 Sum_probs=118.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-CCCChh----hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC----hhHHH
Q 003868 489 AMIAALGQHGNGARAIELYEQMLKEG-ILPDRI----TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG----EDHYA 559 (790)
Q Consensus 489 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 559 (790)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...|+.+.+...-.++ ...++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667788899999999998887632 122211 2334556667778899999999888763112222 23688
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-----C---CCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------Ccch
Q 003868 560 RFIDLLCRAGKFSEAKDVIDSLP-----F---KPS-APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH------AGTY 624 (790)
Q Consensus 560 ~li~~~~~~g~~~~A~~~~~~~~-----~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 624 (790)
.+...|...|++++|.+.++++- . .+. ..++..+...|...|++++|+..+++++++.+.. +.+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88899999999999988887651 1 122 2378889999999999999999999999875433 5678
Q ss_pred HhhHHHHHhcCC-hhHHHHHHHHHHh
Q 003868 625 VLLSNMYANLGR-WDDAARVRKLMRD 649 (790)
Q Consensus 625 ~~l~~~~~~~g~-~~~a~~~~~~m~~ 649 (790)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999995 6999999988753
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.55 E-value=4.1e-07 Score=78.98 Aligned_cols=106 Identities=14% Similarity=0.007 Sum_probs=55.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 003868 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRI 599 (790)
Q Consensus 522 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 599 (790)
+......+.+.|++++|++.|++..+. .+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 334444455555555555555554431 2223444555555555555555555555443 2222 34456666666666
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCcchHhhHH
Q 003868 600 HGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629 (790)
Q Consensus 600 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 629 (790)
.|++++|+..++++++++|+++.++..|.+
T Consensus 94 ~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 666666666666666666666555555443
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.54 E-value=1.2e-06 Score=83.90 Aligned_cols=124 Identities=13% Similarity=0.042 Sum_probs=104.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHH
Q 003868 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PF-KPSAPIWEALLAGCRI 599 (790)
Q Consensus 522 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~ 599 (790)
+..+...+...|++++|...|+... .|+...+..+...|.+.|++++|.+.+++. .. +.+...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 4455566777888888888888764 457778888888888899999998888775 22 3467789999999999
Q ss_pred hCCHHHHHHHHHHHHhcCCCCC----------------cchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 600 HGNIDLGIQAAEQLFQLMPHHA----------------GTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 600 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
.|++++|+..++++++..|.+. ..+..++.+|...|++++|.+.+++..+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999999999998887 88999999999999999999999999764
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.54 E-value=5.4e-07 Score=83.57 Aligned_cols=155 Identities=10% Similarity=0.010 Sum_probs=101.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH-H-HH
Q 003868 456 GNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS-A-CN 530 (790)
Q Consensus 456 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a-~~ 530 (790)
...+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++... ..|+.. +..+.. . +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~-~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNS-YKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChH-HHHHHHHHHHH
Confidence 34556667777788888888877764 3566777777777788888888888777665 344332 222211 1 11
Q ss_pred ccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHhCCHHHH
Q 003868 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS---APIWEALLAGCRIHGNIDLG 606 (790)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a 606 (790)
..+...+|...++...+. .+.+...+..+...|.+.|++++|.+.+++. ...|+ ...|..+...+...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 212223456677766642 2334677777888888888888888888765 33443 45777888888888888888
Q ss_pred HHHHHHHHh
Q 003868 607 IQAAEQLFQ 615 (790)
Q Consensus 607 ~~~~~~~~~ 615 (790)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887664
No 115
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.54 E-value=5e-06 Score=79.38 Aligned_cols=127 Identities=6% Similarity=0.024 Sum_probs=61.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 003868 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468 (790)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 468 (790)
+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...++.+++.. +.+...+..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 5556666666666666666665542 2234455555555556666666666666655543 3334455555555543332
Q ss_pred --HHHHHHHHhcCCCCCHhH--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 003868 469 --VEAANCVFNTMPNVDSVS--WNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519 (790)
Q Consensus 469 --~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 519 (790)
.+.+...|+....++... |..+..++...|++++|+..|++.++ +.|+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~ 190 (208)
T 3urz_A 138 QEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPST 190 (208)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCH
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCH
Confidence 233444444444443322 22223333444555555555555554 34443
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.52 E-value=1.7e-07 Score=96.04 Aligned_cols=196 Identities=11% Similarity=-0.001 Sum_probs=144.8
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 003868 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510 (790)
Q Consensus 431 ~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 510 (790)
.|++++|.+++++..+..-. . .+...++++.|...|.. ....|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 45667777777766654211 1 01114788888877665 466788999999999999988
Q ss_pred HHcCC---CC-C-hhhHHHHHHHHHccCCHHHHHHHHHHcccCC---CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 003868 511 LKEGI---LP-D-RITFLTVLSACNHAGLVKEGRRYFETMHGPY---GIPP-GEDHYARFIDLLCRAGKFSEAKDVIDSL 581 (790)
Q Consensus 511 ~~~g~---~p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 581 (790)
.+... .+ . ..+|..+...|...|++++|...|++..+.+ |... ...++..+...|.+ |++++|++.+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 75311 11 1 2478888889999999999999998775421 2111 24577888899988 9999999998875
Q ss_pred ----CCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC------cchHhhHHHHHhcCChhHHHHHHHHH
Q 003868 582 ----PFKPS----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA------GTYVLLSNMYANLGRWDDAARVRKLM 647 (790)
Q Consensus 582 ----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m 647 (790)
+...+ ..++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|.+.+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11111 35788899999999999999999999999866553 26677788888999999999999998
Q ss_pred H
Q 003868 648 R 648 (790)
Q Consensus 648 ~ 648 (790)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 6
No 117
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.51 E-value=7.8e-07 Score=79.11 Aligned_cols=96 Identities=16% Similarity=0.052 Sum_probs=84.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHH
Q 003868 554 GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631 (790)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 631 (790)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3455667778889999999999999876 3334 6788999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHh
Q 003868 632 ANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 632 ~~~g~~~~a~~~~~~m~~ 649 (790)
...|++++|.+.+++..+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999999875
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.50 E-value=1.9e-06 Score=87.45 Aligned_cols=164 Identities=6% Similarity=-0.070 Sum_probs=122.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHccCCHHHHHHHHHHcccCCC--CCCC--hh
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-----ITFLTVLSACNHAGLVKEGRRYFETMHGPYG--IPPG--ED 556 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~--~~ 556 (790)
.+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...+++..+... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455677788899999999999888874222111 1233455566788899999999988764211 1122 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--C----C
Q 003868 557 HYARFIDLLCRAGKFSEAKDVIDSLP----FKPS-----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH--H----A 621 (790)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~----~ 621 (790)
.|+.+...|...|++++|.+.+++.- ..|+ ..++..+...|...|++++|+..+++++++.++ + .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78889999999999999999887651 1222 257888999999999999999999999877432 1 4
Q ss_pred cchHhhHHHHHhcCChhHH-HHHHHHHHh
Q 003868 622 GTYVLLSNMYANLGRWDDA-ARVRKLMRD 649 (790)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 649 (790)
.+|..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 777887653
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.49 E-value=8.7e-07 Score=76.86 Aligned_cols=99 Identities=12% Similarity=0.152 Sum_probs=89.1
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhh
Q 003868 551 IPPG-EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627 (790)
Q Consensus 551 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 627 (790)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 356778899999999999999999886 3344 678999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 003868 628 SNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 628 ~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999876
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.48 E-value=1.5e-06 Score=83.31 Aligned_cols=144 Identities=8% Similarity=-0.103 Sum_probs=95.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCC
Q 003868 456 GNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD-RITFLTVLSACNHAGL 534 (790)
Q Consensus 456 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 534 (790)
+..+...|...|++++|.+.|++...++...|..+...|...|++++|+..|++..+. .|+ ...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHccc
Confidence 4456666777777777777777777667777777777777777777777777777763 343 3456666666677777
Q ss_pred HHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003868 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQL 613 (790)
Q Consensus 535 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 613 (790)
+++|...|+.+.+...-.+... +...| +...| ....|..+...+...|++++|...++++
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777766654211111000 00000 01223 2357888888999999999999999999
Q ss_pred HhcCCCC
Q 003868 614 FQLMPHH 620 (790)
Q Consensus 614 ~~~~p~~ 620 (790)
++..|++
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 9999876
No 121
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.46 E-value=5e-06 Score=83.91 Aligned_cols=161 Identities=12% Similarity=0.033 Sum_probs=105.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCHhHHHHH-HHH
Q 003868 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--VDSVSWNAM-IAA 493 (790)
Q Consensus 417 ~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~ 493 (790)
+...+..+...+...|++++|...++.+.+.. +.+...+..|...|.+.|++++|...|+++.. |+....... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 33445555566667777777777777776653 34566777788888888888888888888765 443332222 223
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChH
Q 003868 494 LGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572 (790)
Q Consensus 494 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 572 (790)
+...++.++|+..|++..+ ..|+. ..+..+..++...|++++|...|..+.+...-..+...+..++..|...|+.+
T Consensus 195 l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 5566777778888888777 35554 56677777777888888888888777753111112456667777777777777
Q ss_pred HHHHHHHh
Q 003868 573 EAKDVIDS 580 (790)
Q Consensus 573 ~A~~~~~~ 580 (790)
+|...+++
T Consensus 273 ~a~~~~r~ 280 (287)
T 3qou_A 273 ALASXYRR 280 (287)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 76666544
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.45 E-value=1.7e-06 Score=78.92 Aligned_cols=126 Identities=11% Similarity=0.052 Sum_probs=85.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHH
Q 003868 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PF-KPSAPIWEALLAGCRI 599 (790)
Q Consensus 522 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~ 599 (790)
+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. .. +.+...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 334444455555555555555555431 2234555666666666667777776666654 22 2356678888888899
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCcchHhhHH--HHHhcCChhHHHHHHHHHHh
Q 003868 600 HGNIDLGIQAAEQLFQLMPHHAGTYVLLSN--MYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 600 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~ 649 (790)
.|++++|...++++++..|.+...+..+.. .+...|++++|.+.++...+
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999998877754444 47888999999998887643
No 123
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.43 E-value=2e-05 Score=85.91 Aligned_cols=172 Identities=8% Similarity=-0.071 Sum_probs=108.5
Q ss_pred HHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcc
Q 003868 470 EAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546 (790)
Q Consensus 470 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 546 (790)
+.+..+|+++.. .+...|-..+.-+.+.|+.++|..+|++.... |+...+.....-+...+.. -..+.+...
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~~~--~~~l~~~~~ 270 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEEAV--YGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCTHH--HHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchhHH--HHHHHHHHH
Confidence 345566766543 35777888888888899999999999999985 6654332221111111111 111221111
Q ss_pred cCCC-----CCC---ChhHHHHHHHHHHhcCChHHHHHHHHhCCCC-CCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhc
Q 003868 547 GPYG-----IPP---GEDHYARFIDLLCRAGKFSEAKDVIDSLPFK-PSAPIWEALLAGCRI-HGNIDLGIQAAEQLFQL 616 (790)
Q Consensus 547 ~~~~-----~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~ 616 (790)
. .. ..+ ....|...++.+.+.|.++.|.++|++...+ .+..+|......-.. .++.+.|..+++.+++.
T Consensus 271 ~-~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 271 M-GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred h-hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 0 00 001 1245667777777888899999999887322 234455433322222 34689999999999998
Q ss_pred CCCCCcchHhhHHHHHhcCChhHHHHHHHHH
Q 003868 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647 (790)
Q Consensus 617 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 647 (790)
.|+++..+...++...+.|+.+.|..+++..
T Consensus 350 ~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 350 HPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888777777788788889999999988886
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.43 E-value=2.2e-07 Score=93.60 Aligned_cols=187 Identities=7% Similarity=-0.036 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHH
Q 003868 455 AGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACN 530 (790)
Q Consensus 455 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~ 530 (790)
.+..+...|.+.|++++|...|++... .+...|..+...|.+.|++++|+..+++..+ +.|+. ..+..+..++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 344445555555555555555554431 2455556666666666666666666666655 34433 35555556666
Q ss_pred ccCCHHHHHHHHHHcccCCCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 003868 531 HAGLVKEGRRYFETMHGPYGIPPGE-DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609 (790)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 609 (790)
..|++++|...|+...+. .|+. ..+...+....+..+...... .......++..+...+ ..+ ..|+.++|.+.
T Consensus 84 ~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~~ 157 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERELEE 157 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHHHH
Confidence 666666666666655431 1110 011111111111111111111 1122223344443333 222 26888889999
Q ss_pred HHHHHhcCCCCCcchHhhHHHHHhc-CChhHHHHHHHHHHh
Q 003868 610 AEQLFQLMPHHAGTYVLLSNMYANL-GRWDDAARVRKLMRD 649 (790)
Q Consensus 610 ~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 649 (790)
++++++++|++......+...+.+. +++++|.++|.++.+
T Consensus 158 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 158 CQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999888877777777777766 778899999988764
No 125
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.42 E-value=9.3e-06 Score=77.75 Aligned_cols=169 Identities=11% Similarity=-0.008 Sum_probs=112.0
Q ss_pred HHHHHHHhccC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----ChHHHHHHHHHHH
Q 003868 371 AKSLFEAMRER-NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG----ALENGRQLHAQLV 445 (790)
Q Consensus 371 A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~a~~i~~~~~ 445 (790)
|.+.|++..+. ++.++..+...|...+++++|+..|++..+.| +...+..+-..+.. + +.++|...+....
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 44555554443 55667777777777777778887777777654 34455555555555 5 7777777777776
Q ss_pred HhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCCCCC-----HhHHHHHHHHHHh----cCChHHHHHHHHHHHH
Q 003868 446 HSGYDSSLSAGNALITMYAR----CGVVEAANCVFNTMPNVD-----SVSWNAMIAALGQ----HGNGARAIELYEQMLK 512 (790)
Q Consensus 446 ~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 512 (790)
+.| +...+..|..+|.. .+++++|.+.|++..+.+ +.++..|...|.. .++.++|+..|++..+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 654 45566677777766 677888888887766532 5677777777777 6778888888888777
Q ss_pred cCCCCChhhHHHHHHHHHcc-C-----CHHHHHHHHHHcccC
Q 003868 513 EGILPDRITFLTVLSACNHA-G-----LVKEGRRYFETMHGP 548 (790)
Q Consensus 513 ~g~~p~~~t~~~ll~a~~~~-g-----~~~~a~~~~~~~~~~ 548 (790)
. .++...+..|...|... | +.++|..+|+...+.
T Consensus 158 ~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 158 L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 4 23444555566665432 2 677777777776653
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.42 E-value=2.3e-06 Score=73.40 Aligned_cols=113 Identities=18% Similarity=0.239 Sum_probs=73.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 003868 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-P-FKPSAPIWEALLAGCR 598 (790)
Q Consensus 521 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~ 598 (790)
.+..+...+...|++++|.++|+.+.+. .+.+...+..+...+.+.|++++|...++++ . .+.+..+|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 3444444555555555555555555432 1233455556666666666666666666554 1 1235667788888888
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcC
Q 003868 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLG 635 (790)
Q Consensus 599 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 635 (790)
..|++++|...++++++..|+++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8889999999999999888888888888877776544
No 127
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.42 E-value=6.8e-05 Score=75.45 Aligned_cols=158 Identities=7% Similarity=0.004 Sum_probs=109.8
Q ss_pred CCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCC------
Q 003868 467 GVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGA--RAIELYEQMLKEGILP-DRITFLTVLSACNHAGL------ 534 (790)
Q Consensus 467 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~------ 534 (790)
++++++.++++.+.+ ++..+|+.-.-.+.+.|.++ ++++.++++.+. .| |...|..-.....+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhh
Confidence 556666666666543 46677777777777777777 888888888884 34 44566655555566665
Q ss_pred HHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHhCCHHHHHH
Q 003868 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE-AKDVIDSL-PF----KPSAPIWEALLAGCRIHGNIDLGIQ 608 (790)
Q Consensus 535 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~ll~~~~~~g~~~~a~~ 608 (790)
+++++++++.+.. ..+-|...|+.+..++.+.|+..+ +.++.++. .. ..+...+..+...+.+.|+.++|.+
T Consensus 202 ~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 7888888887775 345567778888888888887544 44566654 11 2366778888888888888888888
Q ss_pred HHHHHHh-cCCCCCcchHhhH
Q 003868 609 AAEQLFQ-LMPHHAGTYVLLS 628 (790)
Q Consensus 609 ~~~~~~~-~~p~~~~~~~~l~ 628 (790)
+++++.+ .+|-+...|...+
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhccChHHHHHHHHHH
Confidence 8888886 6887766555443
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.39 E-value=2.2e-06 Score=74.27 Aligned_cols=115 Identities=7% Similarity=-0.013 Sum_probs=78.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHH
Q 003868 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCR 598 (790)
Q Consensus 521 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~ 598 (790)
.+..+...+...|++++|...|+.+.+. .+.+...+..+...+...|++++|.+.+++. ... .+...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 3444444555555555555555555432 2234455566666666666666666666554 222 34667888888888
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCCh
Q 003868 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRW 637 (790)
Q Consensus 599 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 637 (790)
..|+++.|...++++++..|+++..+..++.++...|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999988888999988888875
No 129
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.38 E-value=1.7e-05 Score=79.87 Aligned_cols=191 Identities=10% Similarity=0.073 Sum_probs=141.1
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHhcCCC---CCHhHHHHHHHHH----Hhc---CChHHHHHHHHHHHHcCCCC-Chhh
Q 003868 455 AGNALITMYARCG--VVEAANCVFNTMPN---VDSVSWNAMIAAL----GQH---GNGARAIELYEQMLKEGILP-DRIT 521 (790)
Q Consensus 455 ~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~~A~~~~~~m~~~g~~p-~~~t 521 (790)
+++.--..+...| +++++++.++.+.. .+...|+.-...+ ... +++++++++++++.+. .| |...
T Consensus 69 aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--~pkny~a 146 (306)
T 3dra_A 69 IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--DPKNHHV 146 (306)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 3444444444444 56666666655442 3455666544444 444 7899999999999984 45 4457
Q ss_pred HHHHHHHHHccCCHH--HHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCC------hHHHHHHHHhC-CCC-CCHHHHH
Q 003868 522 FLTVLSACNHAGLVK--EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK------FSEAKDVIDSL-PFK-PSAPIWE 591 (790)
Q Consensus 522 ~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~A~~~~~~~-~~~-p~~~~~~ 591 (790)
|..-.....+.|.++ +++++++.+.+. .+-|...|+.-..++.+.|+ ++++++.++++ ... -|...|+
T Consensus 147 W~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~ 224 (306)
T 3dra_A 147 WSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWN 224 (306)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHH
Confidence 777777777888887 999999999873 34567777777777777776 88999988876 333 4788999
Q ss_pred HHHHHHHHhCCH-HHHHHHHHHHHhcC---CCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 592 ALLAGCRIHGNI-DLGIQAAEQLFQLM---PHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 592 ~ll~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.+...+.+.|+. +.....++++++++ |.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 225 y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 225 YLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999999888874 44556777777766 78888999999999999999999999999875
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.38 E-value=2.4e-06 Score=74.49 Aligned_cols=114 Identities=7% Similarity=-0.024 Sum_probs=72.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 003868 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PF-KPSAPIWEALLAGCR 598 (790)
Q Consensus 521 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~ 598 (790)
.+..+...+...|++++|..+|+...+. .+.+...+..+...|...|++++|.+.+++. .. +.+...|..+...+.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3444444445555555555555554431 1223445555555556666666666655543 11 235667777888888
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCC
Q 003868 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636 (790)
Q Consensus 599 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 636 (790)
..|++++|...++++++..|.+...+..++.++...|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888876654
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.37 E-value=3.2e-05 Score=78.21 Aligned_cols=203 Identities=9% Similarity=-0.062 Sum_probs=137.9
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhH---HHHHHHHHHhcCCHHHHHHHHhcCCC
Q 003868 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSA---GNALITMYARCGVVEAANCVFNTMPN 481 (790)
Q Consensus 405 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~---~~~li~~y~~~g~~~~A~~~~~~~~~ 481 (790)
.+.++......|+..++..+...+.-.-+ .+.......+... +...+..+...|++++|.+.+++..+
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~ 103 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK 103 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 34444444456777776666655532211 1111111222222 22346778889999999999987543
Q ss_pred -----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCh----hhHHHHHHHHHccCCHHHHHHHHHHccc
Q 003868 482 -----VD----SVSWNAMIAALGQHGNGARAIELYEQMLKEGIL-PDR----ITFLTVLSACNHAGLVKEGRRYFETMHG 547 (790)
Q Consensus 482 -----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 547 (790)
++ ...+..+...+...|++++|+..|++..+.... ++. .+++.+..+|...|++++|..+|+++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12 113334666677788999999999999984322 222 2688888999999999999999998874
Q ss_pred CC----CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHhC-CHHHHHHHHHHH
Q 003868 548 PY----GIPPG-EDHYARFIDLLCRAGKFSEAKDVIDSL-------PFKPS-APIWEALLAGCRIHG-NIDLGIQAAEQL 613 (790)
Q Consensus 548 ~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~ 613 (790)
.. +..+. ..+|..+...|.+.|++++|.+.+++. +..+. ..+|..+...+...| ++++|...++++
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 11 11222 347888999999999999999988765 22222 568888999999999 579999999998
Q ss_pred Hhc
Q 003868 614 FQL 616 (790)
Q Consensus 614 ~~~ 616 (790)
+++
T Consensus 264 l~i 266 (293)
T 3u3w_A 264 SFF 266 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.35 E-value=3.9e-06 Score=82.48 Aligned_cols=135 Identities=15% Similarity=-0.011 Sum_probs=91.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC--hhHHHHHHHHH
Q 003868 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG--EDHYARFIDLL 565 (790)
Q Consensus 488 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~ 565 (790)
-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 34556667777777777777776653 455544445555677788888888888755431 1 111 23566777888
Q ss_pred HhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhh
Q 003868 566 CRAGKFSEAKDVIDSLP---FKPS--APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627 (790)
Q Consensus 566 ~~~g~~~~A~~~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 627 (790)
.+.|++++|++.|++.. ..|. ...+..+..++...|+.++|...+++++..+|+ +.....|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 88888888888888762 2143 236677777888888888888888888888887 5554444
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.33 E-value=2.7e-06 Score=88.10 Aligned_cols=144 Identities=12% Similarity=0.054 Sum_probs=107.1
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHH
Q 003868 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562 (790)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 562 (790)
+...|..+...|.+.|++++|+..|++..+ +.|+...+ ..+++.++-. .....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~~~~---------~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSF-----------SNEEAQKAQA---------LRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCC-----------CSHHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccC-----------ChHHHHHHHH---------HHHHHHHHHH
Confidence 455677777788888888888888888777 34443210 0011111000 0135677788
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHH
Q 003868 563 DLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA 640 (790)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 640 (790)
.+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++..++..++.++...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888775 2333 6778999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHH
Q 003868 641 -ARVRKLMR 648 (790)
Q Consensus 641 -~~~~~~m~ 648 (790)
.+.++.|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 45666664
No 134
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.33 E-value=2.8e-06 Score=73.57 Aligned_cols=95 Identities=9% Similarity=0.048 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHH
Q 003868 555 EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632 (790)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 632 (790)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345667778888899999999888875 2333 67889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHh
Q 003868 633 NLGRWDDAARVRKLMRD 649 (790)
Q Consensus 633 ~~g~~~~a~~~~~~m~~ 649 (790)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 99999999999998875
No 135
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.32 E-value=3.4e-06 Score=91.78 Aligned_cols=117 Identities=9% Similarity=0.037 Sum_probs=86.3
Q ss_pred HHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHH
Q 003868 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDL 605 (790)
Q Consensus 528 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 605 (790)
.+...|++++|.+.|+++.+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344556666666666666542 2334566777777777777777777777665 3334 56788999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcchHhhHHH--HHhcCChhHHHHHHHH
Q 003868 606 GIQAAEQLFQLMPHHAGTYVLLSNM--YANLGRWDDAARVRKL 646 (790)
Q Consensus 606 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 646 (790)
|++.+++++++.|+++..+..++.+ +.+.|++++|.+.+++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999888 8899999999999884
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.32 E-value=3.1e-06 Score=78.42 Aligned_cols=118 Identities=9% Similarity=0.065 Sum_probs=76.1
Q ss_pred ccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHH-HHHhCCH--HH
Q 003868 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAG-CRIHGNI--DL 605 (790)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~-~~~~g~~--~~ 605 (790)
..|++++|...++...+. .+.+...+..+...|...|++++|.+.+++. ... .+...|..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345555555555555432 2334556666666666666666666666654 112 245566666666 6677777 88
Q ss_pred HHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 606 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
|+..++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888888888888778888888888888888888888877653
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.30 E-value=2.9e-06 Score=83.43 Aligned_cols=181 Identities=9% Similarity=-0.053 Sum_probs=133.6
Q ss_pred hcCCHHHHHHHHhcCCC---CCHhHHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCChh--------------
Q 003868 465 RCGVVEAANCVFNTMPN---VDSVSWNAM-------IAALGQHGNGARAIELYEQMLKEGILPDRI-------------- 520 (790)
Q Consensus 465 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------------- 520 (790)
..++.+.|.+.|.++.. .....|+.+ ...+...++..+++..+.+-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46777788888877653 245677766 3445555555555555554443 455431
Q ss_pred --------hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH----H
Q 003868 521 --------TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSA----P 588 (790)
Q Consensus 521 --------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~ 588 (790)
....+..++...|++++|.+.|..+... .|+....-.+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1233556778899999999999998853 354435666777899999999999999977544433 3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CC-CCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLM--PH-HAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 589 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
++..+..++...|++++|+..++++.... |. .+.....++.++.+.|+.++|...|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 68888999999999999999999998543 44 4457789999999999999999999999863
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.29 E-value=1.1e-05 Score=76.29 Aligned_cols=93 Identities=14% Similarity=0.056 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-------CCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC--CC----C
Q 003868 557 HYARFIDLLCRAGKFSEAKDVIDSL-------PFKP--SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP--HH----A 621 (790)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p--~~----~ 621 (790)
.+..+...|...|++++|.+.+++. +..| ...++..+...+...|++++|...++++++..+ ++ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444444455555555554444432 1111 123456666667777777777777777765422 11 1
Q ss_pred cchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 622 GTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.++..++.+|...|++++|.+.+++..+
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2356778888888888888888877654
No 139
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.28 E-value=3.9e-06 Score=70.40 Aligned_cols=98 Identities=9% Similarity=0.122 Sum_probs=82.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--CCcchHhhHH
Q 003868 554 GEDHYARFIDLLCRAGKFSEAKDVIDSL-PF-KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH--HAGTYVLLSN 629 (790)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 629 (790)
+...+..+...+.+.|++++|...+++. .. +.+...|..+...+...|++++|...++++++..|. +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3456667778888888888888888765 22 336678888899999999999999999999999999 8899999999
Q ss_pred HHHhc-CChhHHHHHHHHHHhCC
Q 003868 630 MYANL-GRWDDAARVRKLMRDRG 651 (790)
Q Consensus 630 ~~~~~-g~~~~a~~~~~~m~~~g 651 (790)
+|... |++++|.+.+++..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999 99999999999987643
No 140
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.27 E-value=5.3e-07 Score=85.51 Aligned_cols=172 Identities=9% Similarity=0.008 Sum_probs=104.9
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCH
Q 003868 459 LITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535 (790)
Q Consensus 459 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 535 (790)
.+......|+++++.+.|+...+ .....|..+...+...|++++|+..|++..+ ..|+...+... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~--------~~ 79 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ--------IL 79 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------HH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------hH
Confidence 34444555666666666664432 2345667777778888888888888888877 33432211100 00
Q ss_pred HHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003868 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIHGNIDLGIQAAEQL 613 (790)
Q Consensus 536 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 613 (790)
+.-. .. .....|..+..+|.+.|++++|.+.+++. ... .+...|..+..++...|+++.|+..++++
T Consensus 80 ~~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 80 LDKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0000 00 01355667777888888888888888765 223 36778889999999999999999999999
Q ss_pred HhcCCCCCcchHhhHHHHHhcCChhHHH-HHHHHHHhCC
Q 003868 614 FQLMPHHAGTYVLLSNMYANLGRWDDAA-RVRKLMRDRG 651 (790)
Q Consensus 614 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~g 651 (790)
+++.|+++.++..+..++...|+.+++. ..++.|...|
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999888877 5566665443
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.26 E-value=1.7e-06 Score=77.51 Aligned_cols=108 Identities=7% Similarity=-0.042 Sum_probs=79.4
Q ss_pred CCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 003868 515 ILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWE 591 (790)
Q Consensus 515 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 591 (790)
+.|+. ..+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|.+.|++. ...| +...|.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 34443 34555666777777777777777777642 2345667777778888888888888888775 2233 567788
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcch
Q 003868 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624 (790)
Q Consensus 592 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 624 (790)
.+..++...|++++|+..+++++++.|+++...
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 888899999999999999999999999886553
No 142
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.25 E-value=3.5e-06 Score=72.34 Aligned_cols=93 Identities=14% Similarity=0.030 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhc
Q 003868 557 HYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL 634 (790)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 634 (790)
.+..+...+.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++..+..|+.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556777888999999999999886 3344 6788999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHh
Q 003868 635 GRWDDAARVRKLMRD 649 (790)
Q Consensus 635 g~~~~a~~~~~~m~~ 649 (790)
|++++|.+.+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999865
No 143
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.24 E-value=5.6e-06 Score=74.07 Aligned_cols=105 Identities=10% Similarity=-0.068 Sum_probs=86.2
Q ss_pred CCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 003868 515 ILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWE 591 (790)
Q Consensus 515 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 591 (790)
+.|+. ..+..+...+...|++++|...|+.+.+. -+.+...|..+..+|.+.|++++|.+.|++. .+.| ++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 45554 36777778888999999999999988862 3446788888999999999999999999886 3344 567889
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 003868 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 592 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
.+..++...|++++|+..+++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999998763
No 144
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.24 E-value=8e-06 Score=71.68 Aligned_cols=97 Identities=11% Similarity=0.089 Sum_probs=83.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHH
Q 003868 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630 (790)
Q Consensus 553 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 630 (790)
.+...+..+...+.+.|++++|...|++. ...| +...|..+...+...|+++.|...+++++++.|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45677888888888888888888888775 2233 577888899999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 003868 631 YANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 631 ~~~~g~~~~a~~~~~~m~~ 649 (790)
|...|++++|.+.+++..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999999998875
No 145
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.21 E-value=5.9e-06 Score=75.41 Aligned_cols=96 Identities=13% Similarity=0.094 Sum_probs=70.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHH
Q 003868 554 GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631 (790)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 631 (790)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|+..++++++++|+++..|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455666677777777777777777665 2233 5667777777777788888888888888888888777888888888
Q ss_pred HhcCChhHHHHHHHHHHh
Q 003868 632 ANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 632 ~~~g~~~~a~~~~~~m~~ 649 (790)
...|++++|.+.+++..+
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 888888888888777765
No 146
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.20 E-value=1.5e-05 Score=80.76 Aligned_cols=162 Identities=8% Similarity=-0.062 Sum_probs=114.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC---CC------HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CC--hh
Q 003868 455 AGNALITMYARCGVVEAANCVFNTMPN---VD------SVSWNAMIAALGQHGNGARAIELYEQMLKEGIL---PD--RI 520 (790)
Q Consensus 455 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~~ 520 (790)
.+...+..|...|++++|.+.++...+ .. ...+..+...+...|++++|+..|++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344566778888888888888764321 11 122344556677788999999999988763211 11 23
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHccc---CCCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CH
Q 003868 521 TFLTVLSACNHAGLVKEGRRYFETMHG---PYGIPP--GEDHYARFIDLLCRAGKFSEAKDVIDSL-------PFKP-SA 587 (790)
Q Consensus 521 t~~~ll~a~~~~g~~~~a~~~~~~~~~---~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~ 587 (790)
+++.+...|...|++++|..+|+++.+ .....+ ....|..+...|.+.|++++|.+.+++. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 778888889999999999999988762 211111 1257888899999999999999988765 1111 15
Q ss_pred HHHHHHHHHHHHhCCHHHH-HHHHHHHHhc
Q 003868 588 PIWEALLAGCRIHGNIDLG-IQAAEQLFQL 616 (790)
Q Consensus 588 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 616 (790)
.+|..+...+...|++++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788888899999999999 7778887764
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.18 E-value=8.9e-06 Score=75.22 Aligned_cols=126 Identities=9% Similarity=0.109 Sum_probs=97.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHH-HHhcCCh-
Q 003868 495 GQHGNGARAIELYEQMLKEGILP-DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL-LCRAGKF- 571 (790)
Q Consensus 495 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~- 571 (790)
...|++++|+..|++..+. .| +...+..+...+...|++++|...|+.+.+. .+.+...+..+... +.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 4567888888888888874 45 4467888888888999999999999988763 23466778888888 7788998
Q ss_pred -HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcch
Q 003868 572 -SEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624 (790)
Q Consensus 572 -~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 624 (790)
++|.+.+++. ...| +...|..+...+...|+++.|...++++++..|+++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999998876 3334 567888999999999999999999999999999985543
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.17 E-value=1.3e-05 Score=67.74 Aligned_cols=95 Identities=12% Similarity=0.122 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHH
Q 003868 555 EDHYARFIDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632 (790)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 632 (790)
...+..+...+...|++++|.+.+++. ... .+...|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345566667777777777777777765 222 356677777777778888888888888888888888778888888888
Q ss_pred hcCChhHHHHHHHHHHh
Q 003868 633 NLGRWDDAARVRKLMRD 649 (790)
Q Consensus 633 ~~g~~~~a~~~~~~m~~ 649 (790)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 88888888888877765
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.16 E-value=1.1e-05 Score=70.06 Aligned_cols=98 Identities=15% Similarity=0.135 Sum_probs=88.7
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHH
Q 003868 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629 (790)
Q Consensus 552 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 629 (790)
+.+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..++++++..|+++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345677888999999999999999999986 4444 67889999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 003868 630 MYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 630 ~~~~~g~~~~a~~~~~~m~~ 649 (790)
+|...|++++|.+.+++..+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999875
No 150
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.16 E-value=8.5e-06 Score=70.64 Aligned_cols=94 Identities=10% Similarity=0.006 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc-------chHh
Q 003868 556 DHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG-------TYVL 626 (790)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 626 (790)
..+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..+++++++.|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667888899999999999998875 3344 5778999999999999999999999999999887754 5677
Q ss_pred hHHHHHhcCChhHHHHHHHHHHh
Q 003868 627 LSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 627 l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88889999999999999998765
No 151
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.16 E-value=1.4e-05 Score=68.27 Aligned_cols=96 Identities=19% Similarity=0.287 Sum_probs=86.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHH
Q 003868 555 EDHYARFIDLLCRAGKFSEAKDVIDSL-P-FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632 (790)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 632 (790)
...+..+...+.+.|++++|.+.++++ . .+.+..+|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999886 2 23467889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 003868 633 NLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 633 ~~g~~~~a~~~~~~m~~~ 650 (790)
..|++++|.+.++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998763
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.14 E-value=1.7e-05 Score=67.07 Aligned_cols=107 Identities=11% Similarity=0.062 Sum_probs=64.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 003868 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRI 599 (790)
Q Consensus 522 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 599 (790)
+..+...+...|++++|...|+..... .+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 333444444455555555555554431 1223445555555666666666666665554 1222 45677777788888
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCcchHhhHHH
Q 003868 600 HGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630 (790)
Q Consensus 600 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 630 (790)
.|++++|...++++++..|+++..+..++.+
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 8888888888888888888887666665544
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=2e-05 Score=69.97 Aligned_cols=96 Identities=14% Similarity=0.056 Sum_probs=69.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhH
Q 003868 554 GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628 (790)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 628 (790)
+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|+..++++++..|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4556666667777777777777777664 44555 456777777777777888888888877777777777777777
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 003868 629 NMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 629 ~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.+|...|++++|.+.+++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 788888888888877777754
No 154
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.12 E-value=3.6e-05 Score=69.89 Aligned_cols=129 Identities=13% Similarity=-0.004 Sum_probs=95.3
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHH
Q 003868 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILP-DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562 (790)
Q Consensus 484 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 562 (790)
...|..+...+...|++++|+..|++..+. .| +...+..+..++...|++++|...++...+. .+.+...+..+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a 88 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 345667777888888888888888888874 44 4567777778888888899998888888763 344567788888
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHHhCCHHHHHHHHHHHHhc
Q 003868 563 DLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEA--LLAGCRIHGNIDLGIQAAEQLFQL 616 (790)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~ 616 (790)
..+.+.|++++|.+.+++. ...| +...+.. +...+...|++++|...+++..+.
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 8888999999999888776 2233 4445533 334467788999999888876554
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.10 E-value=1.2e-05 Score=71.26 Aligned_cols=105 Identities=9% Similarity=-0.060 Sum_probs=71.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003868 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCR 598 (790)
Q Consensus 521 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 598 (790)
.+..+...+...|++++|...|+.+... .+.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3444455556666666666666666542 2335556666777777777777777777664 2223 4567778888888
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCcchHhh
Q 003868 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627 (790)
Q Consensus 599 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 627 (790)
..|++++|+..+++++++.|+++......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 99999999999999999988887655444
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.09 E-value=7.3e-05 Score=70.51 Aligned_cols=113 Identities=15% Similarity=0.073 Sum_probs=54.4
Q ss_pred HCCCHHHHHH---HHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhcc------C---ChhHHHHHHHHHHhcCChH
Q 003868 333 KCGKVNEARD---IFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE------R---NLLSWTVMISGLAQNGYGE 400 (790)
Q Consensus 333 ~~g~~~~A~~---~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~---~~~~~~~li~~~~~~g~~~ 400 (790)
..|++++|.+ .+..-+.....++..+...+...|++++|...|++..+ . ...++..+...|...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 44332222344555555666666666666655555433 1 1234555556666666666
Q ss_pred HHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 003868 401 EGLKLFSQMRLE----GFKP--CDYAFAGAITSCAGLGALENGRQLHAQLV 445 (790)
Q Consensus 401 ~A~~~~~~m~~~----g~~p--~~~t~~~ll~~~~~~g~~~~a~~i~~~~~ 445 (790)
+|...+++.... +-.| ....+..+...+...|++++|...+.+..
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666666554432 1011 12233444444555555555555555443
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.08 E-value=2.3e-05 Score=71.35 Aligned_cols=106 Identities=8% Similarity=-0.008 Sum_probs=74.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003868 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCR 598 (790)
Q Consensus 521 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 598 (790)
.+..+...+...|++++|..+|+...+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+...+.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4444555555666666666666655542 2234566666777777777777777777664 2233 5778889999999
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCcchHhhH
Q 003868 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628 (790)
Q Consensus 599 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 628 (790)
..|++++|+..++++++++|+++..+...+
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999988665444
No 158
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.08 E-value=1.1e-05 Score=71.39 Aligned_cols=90 Identities=14% Similarity=0.075 Sum_probs=69.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------CC
Q 003868 560 RFIDLLCRAGKFSEAKDVIDSL-PFKPS-------------APIWEALLAGCRIHGNIDLGIQAAEQLFQL-------MP 618 (790)
Q Consensus 560 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p 618 (790)
.....+.+.|++++|.+.|++. .+.|+ ...|..+..++...|++++|+..+++++++ +|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 3444455555555555555543 11121 338888888999999999999999999999 99
Q ss_pred CCCcch----HhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 619 HHAGTY----VLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 619 ~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
++...| ..++.++...|++++|.+.|++..+
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 998899 9999999999999999999998865
No 159
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.07 E-value=2.5e-05 Score=70.96 Aligned_cols=63 Identities=10% Similarity=0.113 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 587 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
..+|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 357888889999999999999999999999999999999999999999999999999999875
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=4e-05 Score=67.99 Aligned_cols=108 Identities=8% Similarity=-0.017 Sum_probs=68.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 003868 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG----EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALL 594 (790)
Q Consensus 521 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 594 (790)
.+..+...+...|++++|..+|+...+ ..|+ ...+..+...|.+.|++++|.+.+++. ...| +...|..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 344444444455555555555555443 2233 345555666666666666666666554 2223 566778888
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHH
Q 003868 595 AGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631 (790)
Q Consensus 595 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 631 (790)
..+...|++++|...+++++++.|++...+..+..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 8888899999999999999999998876666665544
No 161
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.07 E-value=2.5e-05 Score=78.48 Aligned_cols=187 Identities=7% Similarity=-0.101 Sum_probs=111.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHh
Q 003868 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQ 496 (790)
Q Consensus 420 t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 496 (790)
.+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+..+|..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34444445555555555555555555542 33566677777788888888888888877654 356788888889999
Q ss_pred cCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHH
Q 003868 497 HGNGARAIELYEQMLKEGILPDRI-TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAK 575 (790)
Q Consensus 497 ~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 575 (790)
.|++++|+..|++..+. .|+.. .+...+...... .++..... .... ..+.+......+...+ .|+.++|.
T Consensus 85 ~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~-~~~~~~~i~~~l~~l~--~~~~~~A~ 155 (281)
T 2c2l_A 85 MESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALRI---AKKKRWNS-IEER-RIHQESELHSYLTRLI--AAEREREL 155 (281)
T ss_dssp TTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHHH---HHHHHHHH-HHHT-CCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHH---HHHHHHHH-HHHH-HHhhhHHHHHHHHHHH--HHHHHHHH
Confidence 99999999999988763 34321 111122211111 11111111 1111 3444555555554433 68889999
Q ss_pred HHHHhC-CCCCCHH-HHHHHHHHHHHh-CCHHHHHHHHHHHHhc
Q 003868 576 DVIDSL-PFKPSAP-IWEALLAGCRIH-GNIDLGIQAAEQLFQL 616 (790)
Q Consensus 576 ~~~~~~-~~~p~~~-~~~~ll~~~~~~-g~~~~a~~~~~~~~~~ 616 (790)
+.+++. ...|+.. ....+...+... +.+++|.++|+++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888775 5566554 344444444444 6678888888887664
No 162
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.06 E-value=2e-05 Score=68.07 Aligned_cols=108 Identities=8% Similarity=-0.061 Sum_probs=65.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 003868 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRI 599 (790)
Q Consensus 522 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 599 (790)
+..+...+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 333444445555555555555554431 2233455566666666666666666666554 2233 45677777778888
Q ss_pred hCCHHHHHHHHHHHHhcC------CCCCcchHhhHHHH
Q 003868 600 HGNIDLGIQAAEQLFQLM------PHHAGTYVLLSNMY 631 (790)
Q Consensus 600 ~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 631 (790)
.|++++|+..++++++++ |.+......+..+.
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 888888888888888887 66655555554443
No 163
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.05 E-value=2.5e-05 Score=67.40 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=87.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHH
Q 003868 554 GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631 (790)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 631 (790)
+...+..+...+...|++++|.+.+++. ... .+...|..+...+...|++++|+..++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788889999999999999999886 223 46788999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 003868 632 ANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 632 ~~~g~~~~a~~~~~~m~~~ 650 (790)
...|++++|.+.+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999998763
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.03 E-value=2.3e-05 Score=85.20 Aligned_cols=114 Identities=15% Similarity=0.026 Sum_probs=57.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChH
Q 003868 494 LGQHGNGARAIELYEQMLKEGILPD-RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572 (790)
Q Consensus 494 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 572 (790)
+.+.|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.+++..+. .+.+...|..+..+|.+.|+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 4445666666666666655 2343 345555555666666666666666665542 2233455556666666666666
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHH--HHHhCCHHHHHHHHH
Q 003868 573 EAKDVIDSL-PFKP-SAPIWEALLAG--CRIHGNIDLGIQAAE 611 (790)
Q Consensus 573 ~A~~~~~~~-~~~p-~~~~~~~ll~~--~~~~g~~~~a~~~~~ 611 (790)
+|.+.+++. ...| +...+..+..+ +...|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666554 1122 22233333333 555566666666666
No 165
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.99 E-value=0.0015 Score=66.34 Aligned_cols=99 Identities=7% Similarity=-0.052 Sum_probs=55.4
Q ss_pred CHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCC-
Q 003868 468 VVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGA--------RAIELYEQMLKEGILP-DRITFLTVLSACNHAGL- 534 (790)
Q Consensus 468 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~- 534 (790)
+++++.++++.+.+ +|..+|+.-.-.+.+.|.++ ++++.++++.+. .| |...|+.......+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcccc
Confidence 45566666665554 34555655444444444444 777777777774 33 44456555555555554
Q ss_pred ------HHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCC
Q 003868 535 ------VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570 (790)
Q Consensus 535 ------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 570 (790)
+++++++++++.. ..+-|...|..+-..+.+.|+
T Consensus 218 ~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCC
Confidence 5666666666654 234455566655555555554
No 166
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.98 E-value=4.6e-05 Score=78.72 Aligned_cols=119 Identities=12% Similarity=-0.016 Sum_probs=73.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C---------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003868 452 SLSAGNALITMYARCGVVEAANCVFNTMPN--V-D---------------SVSWNAMIAALGQHGNGARAIELYEQMLKE 513 (790)
Q Consensus 452 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 513 (790)
+...+..+...|.+.|++++|...|++..+ | + ...|..+..+|.+.|++++|+..|++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466788899999999999999999987653 2 2 356666666777777777777777776663
Q ss_pred CCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHH
Q 003868 514 GILPD-RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574 (790)
Q Consensus 514 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 574 (790)
.|+ ...+..+..++...|++++|...|+++.+. .+.+...+..+..++.+.|+.++|
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 343 335555555566666666666666555531 122233444444444444444444
No 167
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.97 E-value=6.4e-06 Score=70.22 Aligned_cols=83 Identities=16% Similarity=0.142 Sum_probs=62.1
Q ss_pred hcCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHH
Q 003868 567 RAGKFSEAKDVIDSL-PF---KP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAA 641 (790)
Q Consensus 567 ~~g~~~~A~~~~~~~-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 641 (790)
..|++++|+..|++. .. .| +...|..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 356777777777765 33 23 34567788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHh
Q 003868 642 RVRKLMRD 649 (790)
Q Consensus 642 ~~~~~m~~ 649 (790)
+.+++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888765
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.97 E-value=3.5e-05 Score=67.46 Aligned_cols=99 Identities=9% Similarity=-0.104 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003868 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGC 597 (790)
Q Consensus 520 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 597 (790)
..+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|...+++. ...| +...|..+...+
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 44555555566666666666666655542 2334556666666677777777777666654 2223 566788888888
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCC
Q 003868 598 RIHGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 598 ~~~g~~~~a~~~~~~~~~~~p~~ 620 (790)
...|+++.|+..+++++++.|++
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHHChhH
Confidence 88888888888888888887773
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.96 E-value=2.1e-05 Score=68.07 Aligned_cols=90 Identities=18% Similarity=0.163 Sum_probs=68.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---CcchHhhHHHH
Q 003868 560 RFIDLLCRAGKFSEAKDVIDSL-PFKPS-A---PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH---AGTYVLLSNMY 631 (790)
Q Consensus 560 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 631 (790)
.+...+.+.|++++|.+.|++. ...|+ . ..|..+...+...|++++|...++++++..|++ +.++..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 4556667778888887777765 11222 2 467777788888888888888888888888888 66688888888
Q ss_pred HhcCChhHHHHHHHHHHh
Q 003868 632 ANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 632 ~~~g~~~~a~~~~~~m~~ 649 (790)
...|++++|.+.++++.+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888888888865
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.93 E-value=3.1e-05 Score=66.82 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-------CcchH
Q 003868 555 EDHYARFIDLLCRAGKFSEAKDVIDSL-P-FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH-------AGTYV 625 (790)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 625 (790)
...+..+...+...|++++|...+++. . .+.+...|..+...+...|++++|...++++++..|++ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345677778888888888888888775 2 23467788888999999999999999999999987766 77889
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHh
Q 003868 626 LLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 626 ~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.++.+|...|++++|.+.+++..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999999876
No 171
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.91 E-value=1.7e-05 Score=74.92 Aligned_cols=147 Identities=8% Similarity=-0.026 Sum_probs=88.4
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCH----------------
Q 003868 424 AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDS---------------- 484 (790)
Q Consensus 424 ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~---------------- 484 (790)
........|+++.+.+.+....... ......+..+...|.+.|++++|...|++..+ .+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3444555677777777665433221 12345677788899999999999999987653 222
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHH
Q 003868 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPD-RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563 (790)
Q Consensus 485 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 563 (790)
..|..+..+|...|++++|+..+++..+. .|+ ...+..+..++...|++++|...|+...+. .+.+...+..+..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHH
Confidence 56777777778888888888888887773 443 346666667777777777777777776642 2234455556666
Q ss_pred HHHhcCChHHHH
Q 003868 564 LLCRAGKFSEAK 575 (790)
Q Consensus 564 ~~~~~g~~~~A~ 575 (790)
++.+.|+.+++.
T Consensus 165 ~~~~~~~~~~~~ 176 (198)
T 2fbn_A 165 CVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHH
Confidence 665555555544
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.89 E-value=7.6e-05 Score=64.31 Aligned_cols=115 Identities=6% Similarity=-0.068 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHH
Q 003868 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564 (790)
Q Consensus 485 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 564 (790)
..|..+...+...|++++|+..|++..+.. ..+...+..+...+...|++++|..+++.+.+. .|
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~----------- 69 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV---GR----------- 69 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HH-----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhh---cc-----------
Confidence 344555555555666666666666555531 112234444444444555555555554444321 00
Q ss_pred HHhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHH
Q 003868 565 LCRAGKFSEAKDVIDSLPFKPS----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632 (790)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 632 (790)
...++ ..+|..+...+...|+++.|...++++++..| ++.....+..+..
T Consensus 70 -----------------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 70 -----------------ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp -----------------HSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred -----------------ccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 00112 45566777777777888888888888887776 4455555544443
No 173
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.87 E-value=0.00039 Score=70.65 Aligned_cols=209 Identities=12% Similarity=0.045 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhcCCC---CCHhHHHHHHHHHHhc-C-ChHHHHHHHHH
Q 003868 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCG-VVEAANCVFNTMPN---VDSVSWNAMIAALGQH-G-NGARAIELYEQ 509 (790)
Q Consensus 436 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~~~~~ 509 (790)
+|.++...++... +.+..+++.--..+...| .++++.+.++.+.. .+..+|+.-...+... + +++++++++++
T Consensus 72 ~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 150 (349)
T 3q7a_A 72 RALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHG 150 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3444444444332 222333444444444455 46777777766543 4667888777777665 6 89999999999
Q ss_pred HHHcCCCCC-hhhHHHHHHHHHccCCHH--------HHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCC-------hHH
Q 003868 510 MLKEGILPD-RITFLTVLSACNHAGLVK--------EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK-------FSE 573 (790)
Q Consensus 510 m~~~g~~p~-~~t~~~ll~a~~~~g~~~--------~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-------~~~ 573 (790)
+.+ ..|. ...|..-.....+.|.++ +++++++++.+. .+-|...|+....++.+.++ +++
T Consensus 151 ~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 151 SLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHH--hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 997 4454 456665555555555555 899999998863 35577888888888888876 688
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCH--------------------HHHHHHHHHHHhcC------CCCCcchH
Q 003868 574 AKDVIDSL-PFKP-SAPIWEALLAGCRIHGNI--------------------DLGIQAAEQLFQLM------PHHAGTYV 625 (790)
Q Consensus 574 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~~~~ 625 (790)
+++.++++ ...| |...|+-+-..+...|+. .........+.... +..+.+..
T Consensus 227 ELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~ 306 (349)
T 3q7a_A 227 ELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALE 306 (349)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHH
Confidence 88888775 3334 788999888877776654 22222222222222 34556778
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHh
Q 003868 626 LLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 626 ~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.|+++|.+.|+.++|.++++.+.+
T Consensus 307 ~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 307 YLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Confidence 999999999999999999999864
No 174
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.87 E-value=0.0011 Score=67.16 Aligned_cols=77 Identities=6% Similarity=0.003 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCC-hHHHHHHHH
Q 003868 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCG--VVEAANCVFNTMPN---VDSVSWNAMIAALGQHGN-GARAIELYE 508 (790)
Q Consensus 435 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~ 508 (790)
+++..++..+.... +-+..+++.-.-.+.+.| .++++..+++.+.+ .|..+|+.-.-.+...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 34444444444432 233344444444444444 24555555555442 355555555555555555 366666666
Q ss_pred HHHH
Q 003868 509 QMLK 512 (790)
Q Consensus 509 ~m~~ 512 (790)
++.+
T Consensus 170 ~~I~ 173 (331)
T 3dss_A 170 SLIT 173 (331)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 175
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.87 E-value=6.8e-05 Score=62.55 Aligned_cols=99 Identities=17% Similarity=0.098 Sum_probs=61.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 003868 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP---SAPIWEALLAG 596 (790)
Q Consensus 521 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~ 596 (790)
.+..+...+...|++++|...|+.+.+. .+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4444555555566666666666655542 2234455666666666666677666666654 2223 45667777777
Q ss_pred HHHh-CCHHHHHHHHHHHHhcCCCCC
Q 003868 597 CRIH-GNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 597 ~~~~-g~~~~a~~~~~~~~~~~p~~~ 621 (790)
+... |++++|++.++++++..|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7777 788888888888877777653
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.86 E-value=6.4e-05 Score=81.29 Aligned_cols=145 Identities=10% Similarity=0.055 Sum_probs=104.0
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHH
Q 003868 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562 (790)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 562 (790)
....|..+...|.+.|++++|+..|++.++ +.|+...+. -+...+ ... .....|..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~-----------~~~~~~-~~~--------~~~~~~~nla 324 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLS-----------EKESKA-SES--------FLLAAFLNLA 324 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCC-----------HHHHHH-HHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCC-----------hHHHHH-HHH--------HHHHHHHHHH
Confidence 345777888888889999999999998887 344432110 011110 000 1135677788
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHH
Q 003868 563 DLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA 640 (790)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 640 (790)
.+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|++..++..++.++...|+++++
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888775 2333 6778999999999999999999999999999999999999999999999999987
Q ss_pred HH-HHHHHHh
Q 003868 641 AR-VRKLMRD 649 (790)
Q Consensus 641 ~~-~~~~m~~ 649 (790)
.+ .++.|..
T Consensus 405 ~~~~~~~~f~ 414 (457)
T 1kt0_A 405 DRRIYANMFK 414 (457)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 74 4555543
No 177
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.85 E-value=0.00098 Score=67.40 Aligned_cols=177 Identities=10% Similarity=0.034 Sum_probs=130.4
Q ss_pred HHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCC-HHHHHHH
Q 003868 469 VEAANCVFNTMPN---VDSVSWNAMIAALGQHGN--GARAIELYEQMLKEGILP-DRITFLTVLSACNHAGL-VKEGRRY 541 (790)
Q Consensus 469 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~-~~~a~~~ 541 (790)
++++..+++.+.. .+..+|+.-...+...|+ +++++.+++++.+. .| |...|+.-.......|. +++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 4566666666543 578889888888888784 89999999999985 44 44577776667777787 6999999
Q ss_pred HHHcccCCCCCCChhHHHHHHHHHHhc--------------CChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHh-----
Q 003868 542 FETMHGPYGIPPGEDHYARFIDLLCRA--------------GKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIH----- 600 (790)
Q Consensus 542 ~~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~----- 600 (790)
+..+.+. .+-|...|+....++.+. +.++++++.+++. ... -|...|+-+-..+...
T Consensus 168 ~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 9999873 455677787777766665 4578888888876 233 4778898766665554
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCCcchHhhHHHH---HhcCChhHHHHHHHHHHh
Q 003868 601 ------GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY---ANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 601 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~ 649 (790)
+.++++++.++++++++|++...+..++... ...|..+++...+.++.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4578999999999999999865554443322 245777888888888875
No 178
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=8.8e-05 Score=79.72 Aligned_cols=163 Identities=7% Similarity=-0.114 Sum_probs=104.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChh----hHHHHHHHHHccCCHHHHHHHHHHcccC---CCCCC-ChhH
Q 003868 487 WNAMIAALGQHGNGARAIELYEQMLKE-GILPDRI----TFLTVLSACNHAGLVKEGRRYFETMHGP---YGIPP-GEDH 557 (790)
Q Consensus 487 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~ 557 (790)
+..+...|...|++++|.+.+.++... +..++.. ..+.+-..+...|..+++..+++..... .+..+ ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 455677777777777777777766542 1112221 1222222334567777777777665321 12222 2456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---CCC----Cc
Q 003868 558 YARFIDLLCRAGKFSEAKDVIDSL-------PFKPS-APIWEALLAGCRIHGNIDLGIQAAEQLFQLM---PHH----AG 622 (790)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~ 622 (790)
+..+...|...|++++|.+++++. ..++. ..++..++..|...|++++|...+++++... +++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 777888888888888888887754 11222 3467788888889999999999998887653 222 24
Q ss_pred chHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 623 TYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 623 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.+..++..+...|++++|.+.+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 566777888888999999888777643
No 179
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.81 E-value=7.1e-05 Score=64.02 Aligned_cols=98 Identities=12% Similarity=0.053 Sum_probs=65.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 003868 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRI 599 (790)
Q Consensus 522 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 599 (790)
+..+...+...|++++|...|+.+.+. .+.+...|..+..++.+.|++++|+..+++. ...| +...|..+...+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 444555666777777777777776652 2335666777777777777888777777765 3334 56678888888888
Q ss_pred hCCHHHHHHHHHHHHhcCCCCC
Q 003868 600 HGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 600 ~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
.|++++|+..++++++.+|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8888888888888888888763
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.81 E-value=5.5e-05 Score=68.08 Aligned_cols=93 Identities=15% Similarity=0.161 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------CCc
Q 003868 557 HYARFIDLLCRAGKFSEAKDVIDSL-------PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH------HAG 622 (790)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 622 (790)
.+..+...+...|++++|.+.+++. +..+ ...++..+...+...|++++|...++++++..+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444455555555555555555443 1011 1335666777777888888888888887765221 235
Q ss_pred chHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 623 TYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 623 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677888889999999999988887754
No 181
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.81 E-value=4.4e-05 Score=67.59 Aligned_cols=117 Identities=10% Similarity=0.004 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCC-CCChhHHHHHHHH
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI-PPGEDHYARFIDL 564 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~ 564 (790)
.+......+.+.|++++|+..|++.++ +.|+...- +.... +.+...|..+..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~------------------------~a~~~~~~~a~a~~n~g~a 66 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPE------------------------EAFDHAGFDAFCHAGLAEA 66 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTT------------------------SCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcch------------------------hhhhhccchHHHHHHHHHH
Confidence 455566667777777788877777777 45542100 00000 0012255566666
Q ss_pred HHhcCChHHHHHHHHhC--------CCCCCH-HHH----HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhH
Q 003868 565 LCRAGKFSEAKDVIDSL--------PFKPSA-PIW----EALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628 (790)
Q Consensus 565 ~~~~g~~~~A~~~~~~~--------~~~p~~-~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 628 (790)
+.+.|++++|+..+++. .+.|+. ..| .....++...|++++|+..|++++++.|++...+..+.
T Consensus 67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 66666666666555543 337754 578 89999999999999999999999999999988776663
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.78 E-value=0.00015 Score=62.57 Aligned_cols=98 Identities=15% Similarity=0.075 Sum_probs=58.2
Q ss_pred HHHHHccCCHHHHHHHHHHcccCCCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 003868 526 LSACNHAGLVKEGRRYFETMHGPYGIPPGE---DHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS----APIWEALLAGC 597 (790)
Q Consensus 526 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~ 597 (790)
...+...|++++|...|+.+.+. .+.+. ..+..+...+.+.|++++|.+.+++. ...|+ ...+..+...+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 33444555555555555555432 11111 34555556666666666666666554 11222 45566777778
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCCCcchH
Q 003868 598 RIHGNIDLGIQAAEQLFQLMPHHAGTYV 625 (790)
Q Consensus 598 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 625 (790)
...|++++|...++++++..|+++....
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 8888888888888888888887754433
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.76 E-value=4.7e-05 Score=78.68 Aligned_cols=146 Identities=10% Similarity=0.008 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHH
Q 003868 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564 (790)
Q Consensus 485 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 564 (790)
..|..+...+.+.|++++|+..|++..+ ..|+... +...|+.+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 4466677778888999999999999887 4565442 233444444443321 1367788888
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHH-HhcCChhHHH
Q 003868 565 LCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY-ANLGRWDDAA 641 (790)
Q Consensus 565 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~ 641 (790)
|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..|..+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999888875 3334 6778888999999999999999999999999999988888888874 4556778888
Q ss_pred HHHHHHHhC
Q 003868 642 RVRKLMRDR 650 (790)
Q Consensus 642 ~~~~~m~~~ 650 (790)
+++++|...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 888888654
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.75 E-value=9.8e-05 Score=66.35 Aligned_cols=132 Identities=14% Similarity=0.037 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCh----hhHHHHHHHHHccCCHHHHHHHHHHcccCC---CCCC-Chh
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGIL-PDR----ITFLTVLSACNHAGLVKEGRRYFETMHGPY---GIPP-GED 556 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~ 556 (790)
++..+...+...|++++|+..+++..+..-. ++. .++..+...+...|++++|..+++...+.. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4445555555666666666666655442100 111 245555566666666666666666554311 1111 134
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 003868 557 HYARFIDLLCRAGKFSEAKDVIDSL-------PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617 (790)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 617 (790)
.+..+...+...|++++|.+.+++. +..+ ...++..+...+...|++++|...+++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5566667777777777777776654 1111 13456777788888999999999999888764
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.75 E-value=0.00043 Score=76.63 Aligned_cols=168 Identities=10% Similarity=-0.003 Sum_probs=128.9
Q ss_pred CHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccC
Q 003868 468 VVEAANCVFNTMPN---VDSVSWNAMIAALGQHGN----------GARAIELYEQMLKEGILPDR-ITFLTVLSACNHAG 533 (790)
Q Consensus 468 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 533 (790)
..++|.+.++.+.. .+...|+.--..+...|+ ++++++.++++.+ ..|+. .+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcc
Confidence 34566666666543 355667766666666666 8889999999888 45654 46777777777888
Q ss_pred --CHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh--------
Q 003868 534 --LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG-KFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIH-------- 600 (790)
Q Consensus 534 --~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-------- 600 (790)
+++++.++++++.+. .+-+...|+.-..++.+.| .++++.+.++++ ...| |...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 679999999988863 3456777887777888888 888999998887 4444 677888887777663
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhH
Q 003868 601 ------GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639 (790)
Q Consensus 601 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 639 (790)
+.++++++.+++++..+|++..+|..+..++.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988655
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.75 E-value=8.4e-05 Score=77.72 Aligned_cols=138 Identities=12% Similarity=0.067 Sum_probs=103.7
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHH
Q 003868 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563 (790)
Q Consensus 484 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 563 (790)
...|..+...+.+.|++++|+..|++.++. .|+.. .....+++ .+ ..+.+...|..+..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~-------~~--~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADG-------AK--LQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHH-------GG--GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHH-------HH--HHHHHHHHHHHHHH
Confidence 346777888888899999999998887762 11110 00011111 10 01123567888888
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHH
Q 003868 564 LLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAA 641 (790)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 641 (790)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998876 4455 56788999999999999999999999999999999999999999999988888776
Q ss_pred H
Q 003868 642 R 642 (790)
Q Consensus 642 ~ 642 (790)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 5
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.74 E-value=3e-05 Score=65.95 Aligned_cols=92 Identities=13% Similarity=0.136 Sum_probs=63.6
Q ss_pred cCCHHHHHHHHHHcccCCC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHH
Q 003868 532 AGLVKEGRRYFETMHGPYG--IPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGI 607 (790)
Q Consensus 532 ~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 607 (790)
.|++++|+..|++..+. + -+.+...+..+...|.+.|++++|.+.|++. ...| +..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46666777777766642 1 1223456677777788888888888877765 2233 5667888888888999999999
Q ss_pred HHHHHHHhcCCCCCcch
Q 003868 608 QAAEQLFQLMPHHAGTY 624 (790)
Q Consensus 608 ~~~~~~~~~~p~~~~~~ 624 (790)
..++++++..|+++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 99999999988886543
No 188
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.74 E-value=0.00019 Score=61.86 Aligned_cols=105 Identities=10% Similarity=0.063 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC-hhHHHHHH
Q 003868 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG-EDHYARFI 562 (790)
Q Consensus 485 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li 562 (790)
.++..+...+.+.|++++|++.|++.++ +.|+. ..|..+..+|...|++++|++.|+...+. .|+ ...+..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~- 82 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLI- 82 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHH-
Confidence 4556666666677777777777776666 34543 34555566666666666666666655431 111 0001000
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 003868 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619 (790)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 619 (790)
..+|..+...+...|++++|++.++++++..|+
T Consensus 83 ------------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 ------------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp ------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred ------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 124555666677777777777777777776664
No 189
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.70 E-value=0.00014 Score=59.65 Aligned_cols=65 Identities=26% Similarity=0.252 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 585 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 36778999999999999999999999999999999999999999999999999999999998865
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.67 E-value=3.8e-05 Score=79.40 Aligned_cols=112 Identities=12% Similarity=0.015 Sum_probs=88.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Q 003868 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600 (790)
Q Consensus 521 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 600 (790)
.+..+...+...|++++|...|+...+. .|+... +...|+.+++...+. ...|..+..++...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence 3455666778889999999999987742 343221 233444555544432 13788899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 601 GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 601 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
|++++|+..++++++++|++..+|..++.+|...|++++|.+.+++..+
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999865
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.67 E-value=8.4e-05 Score=67.38 Aligned_cols=122 Identities=12% Similarity=0.028 Sum_probs=83.6
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhH
Q 003868 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEG------ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557 (790)
Q Consensus 484 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 557 (790)
...|......+.+.|++++|+..|++.++.- -.|+...+ ..+ .+.+...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~-----~~~~~~~ 65 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VEL-----DRKNIPL 65 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHH-----HHTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHH-----HHHHHHH
Confidence 4456667777777888888888887776520 01111100 000 1123456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC-cchHhhHHH
Q 003868 558 YARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA-GTYVLLSNM 630 (790)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 630 (790)
|..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|...++++++++|+++ .....|..+
T Consensus 66 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 777888888888888888888775 3334 577888999999999999999999999999999987 444444433
No 192
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00025 Score=76.16 Aligned_cols=159 Identities=10% Similarity=-0.008 Sum_probs=117.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCh----------------hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC
Q 003868 491 IAALGQHGNGARAIELYEQMLKEGILPDR----------------ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554 (790)
Q Consensus 491 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 554 (790)
...+.+.|++++|++.|.+..+..-.... ..+..+...|...|++++|.+++..+.+..+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34567789999999999998874221111 13677889999999999999999988653222222
Q ss_pred h----hHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----
Q 003868 555 E----DHYARFIDLLCRAGKFSEAKDVIDSL-------PFKPS-APIWEALLAGCRIHGNIDLGIQAAEQLFQLM----- 617 (790)
Q Consensus 555 ~----~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----- 617 (790)
. ...+.+...+...|++++|.+++++. +..+. ..++..|...+...|++++|...++++....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 22334444555678999998887754 22333 4578889999999999999999999987651
Q ss_pred -CCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 618 -PHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 618 -p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
|....+|..++.+|...|++++|..++++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22245888999999999999999999988753
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.64 E-value=0.00017 Score=77.91 Aligned_cols=122 Identities=11% Similarity=0.051 Sum_probs=83.9
Q ss_pred HccCCHHHHHHHHHHcccC----CC-CCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HHHHHH
Q 003868 530 NHAGLVKEGRRYFETMHGP----YG-IPP-GEDHYARFIDLLCRAGKFSEAKDVIDSL---------PFKPSA-PIWEAL 593 (790)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~----~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l 593 (790)
...|++++|..++++..+. +| ..| ...+++.|..+|...|++++|+.++++. +..|+. .+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3455555555555443221 11 111 2356667777777777777777766554 234543 468889
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhc-----CCCCCc---chHhhHHHHHhcCChhHHHHHHHHHHhCC
Q 003868 594 LAGCRIHGNIDLGIQAAEQLFQL-----MPHHAG---TYVLLSNMYANLGRWDDAARVRKLMRDRG 651 (790)
Q Consensus 594 l~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 651 (790)
...|..+|++++|+.++++++++ .|+++. ....|..++.+.|++++|..++.++++.-
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998864 677654 45678888999999999999999998643
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.63 E-value=9e-05 Score=61.88 Aligned_cols=93 Identities=14% Similarity=0.053 Sum_probs=75.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------CcchH
Q 003868 554 GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH------AGTYV 625 (790)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 625 (790)
+...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..+++++++.|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566777888888999999999888875 2233 67788999999999999999999999999999998 67788
Q ss_pred hhHHHHHhcCChhHHHHHHHH
Q 003868 626 LLSNMYANLGRWDDAARVRKL 646 (790)
Q Consensus 626 ~l~~~~~~~g~~~~a~~~~~~ 646 (790)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888887777655443
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.58 E-value=0.00026 Score=56.47 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHH
Q 003868 555 EDHYARFIDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632 (790)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 632 (790)
...+..+...+.+.|++++|.+.+++. ... .+...|..+...+...|++++|...++++++.+|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777788888888888888765 222 356778888888889999999999999999999998888888888876
Q ss_pred hcC
Q 003868 633 NLG 635 (790)
Q Consensus 633 ~~g 635 (790)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 196
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.57 E-value=0.00057 Score=73.82 Aligned_cols=64 Identities=5% Similarity=-0.034 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 587 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999999999999999999999999999763
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.57 E-value=0.00019 Score=60.59 Aligned_cols=77 Identities=9% Similarity=0.073 Sum_probs=65.1
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 573 EAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 573 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+|.+.+++. ...| +...|..+...+...|++++|+..++++++.+|+++..|..++.+|...|++++|.+.+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555543 3334 6778889999999999999999999999999999999999999999999999999999998865
No 198
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.57 E-value=0.00028 Score=73.72 Aligned_cols=111 Identities=8% Similarity=0.035 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 003868 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP-SAPIWEALLAGCR 598 (790)
Q Consensus 520 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~ 598 (790)
..+..+...+...|++++|...|+++.+. .+.. ......+++. ...| +..+|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGS----------RAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 34555666666677777777776665531 0000 0000111111 0223 4567889999999
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 599 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999875
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.53 E-value=4.9e-05 Score=67.12 Aligned_cols=83 Identities=16% Similarity=0.134 Sum_probs=63.2
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHhcCCCCCcchHhhHHHHHhc
Q 003868 567 RAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGN----------IDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL 634 (790)
Q Consensus 567 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 634 (790)
|.+++++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|++..+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445566666665554 2233 45556656555555544 57999999999999999999999999999987
Q ss_pred C-----------ChhHHHHHHHHHHh
Q 003868 635 G-----------RWDDAARVRKLMRD 649 (790)
Q Consensus 635 g-----------~~~~a~~~~~~m~~ 649 (790)
| ++++|.+.|++..+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH
Confidence 5 89999999999976
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.36 E-value=0.00071 Score=54.27 Aligned_cols=69 Identities=20% Similarity=0.063 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCC
Q 003868 584 KPSAPIWEALLAGCRIHGN---IDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652 (790)
Q Consensus 584 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 652 (790)
.+++..|..+..++...++ .++|..+++++++.+|+++.+...++..+...|++++|...|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3577788888888866655 69999999999999999999999999999999999999999999987544
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.27 E-value=0.00087 Score=72.27 Aligned_cols=115 Identities=9% Similarity=-0.045 Sum_probs=87.9
Q ss_pred HHHhcCChHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCC---cchH
Q 003868 564 LLCRAGKFSEAKDVIDSL---------PFKPSA-PIWEALLAGCRIHGNIDLGIQAAEQLFQL-----MPHHA---GTYV 625 (790)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~ 625 (790)
.+...|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++. .|+++ .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999888764 223433 47899999999999999999999998864 45554 5788
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHHHH
Q 003868 626 LLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRK 696 (790)
Q Consensus 626 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 696 (790)
.|+.+|...|++++|..++++..+--.. . . ...||...++...+.+...++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~-~----------------l-G~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV-T----------------H-GPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-H----------------T-CTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH-H----------------h-CCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998652111 0 1 13599999888877777665543
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.23 E-value=0.0012 Score=57.83 Aligned_cols=90 Identities=8% Similarity=-0.126 Sum_probs=52.3
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHh---
Q 003868 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI----HGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN--- 633 (790)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 633 (790)
|...|...+..++|.+.|++.-...+...+..|...|.. .+|.++|...++++.+. .++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 333444444444455554443222344555555555555 56666677777666655 455666777777776
Q ss_pred -cCChhHHHHHHHHHHhCCC
Q 003868 634 -LGRWDDAARVRKLMRDRGV 652 (790)
Q Consensus 634 -~g~~~~a~~~~~~m~~~g~ 652 (790)
.+++++|.+++++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 6777777777777766554
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.00081 Score=55.85 Aligned_cols=65 Identities=12% Similarity=0.053 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 586 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
+...|..+...+...|++++|+..++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45678889999999999999999999999999999999999999999999999999999999763
No 204
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.22 E-value=0.0011 Score=70.44 Aligned_cols=116 Identities=12% Similarity=0.131 Sum_probs=83.7
Q ss_pred HHHHHhcCChHHHHHHHHhC------CCCC---C-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCC---cc
Q 003868 562 IDLLCRAGKFSEAKDVIDSL------PFKP---S-APIWEALLAGCRIHGNIDLGIQAAEQLFQL-----MPHHA---GT 623 (790)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~~------~~~p---~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~ 623 (790)
+..+.+.|++++|++++++. -+.| + ..+++.|..+|...|++++|+.+++++++. .|+++ .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455667777777776543 0122 2 246888888899999999999999988764 34443 57
Q ss_pred hHhhHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHHH
Q 003868 624 YVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMR 695 (790)
Q Consensus 624 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 695 (790)
++.|+.+|...|++++|..++++..+--. .. . ...||...+++..+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~~----------------l-G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-VT----------------H-GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HH----------------T-CTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-Hh----------------c-CCCChHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999998865211 10 1 1359999999999988888775
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.10 E-value=0.00034 Score=61.77 Aligned_cols=73 Identities=16% Similarity=0.098 Sum_probs=44.6
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChh
Q 003868 572 SEAKDVIDSL-PFKP-SAPIWEALLAGCRIH-----------GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWD 638 (790)
Q Consensus 572 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 638 (790)
++|+..|++. .+.| +...|..+..+|... |++++|+..|+++++++|++......+ ...+
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al-------~~~~ 135 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL-------EMTA 135 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHH
Confidence 3555555554 3334 344566666666555 589999999999999999984222221 1235
Q ss_pred HHHHHHHHHHhCC
Q 003868 639 DAARVRKLMRDRG 651 (790)
Q Consensus 639 ~a~~~~~~m~~~g 651 (790)
+|.+++-.....+
T Consensus 136 ka~el~~~~~~~~ 148 (158)
T 1zu2_A 136 KAPQLHAEAYKQG 148 (158)
T ss_dssp THHHHHHHHHHSS
T ss_pred hCHhccCcccccc
Confidence 5555555554443
No 206
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.10 E-value=0.0051 Score=67.97 Aligned_cols=149 Identities=12% Similarity=0.040 Sum_probs=121.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHccCC----------HHHHHHHHHHcccCCCCCCChhHHHHHHHHH
Q 003868 497 HGNGARAIELYEQMLKEGILPDRI-TFLTVLSACNHAGL----------VKEGRRYFETMHGPYGIPPGEDHYARFIDLL 565 (790)
Q Consensus 497 ~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 565 (790)
....++|++.++++.+ +.|+.. .|+.--.++.+.|+ ++++.+.++.+.+ ..+-+...|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 3446788999999999 678875 45555555556666 9999999999987 3455677888888889
Q ss_pred HhcC--ChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhc------
Q 003868 566 CRAG--KFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIHG-NIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL------ 634 (790)
Q Consensus 566 ~~~g--~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 634 (790)
.+.| ++++|+++++++ ... .+..+|+.-.......| .++++++.++++++.+|.|..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9999 779999999987 333 47889999888888888 899999999999999999999999999998874
Q ss_pred --------CChhHHHHHHHHHHh
Q 003868 635 --------GRWDDAARVRKLMRD 649 (790)
Q Consensus 635 --------g~~~~a~~~~~~m~~ 649 (790)
++++++.+++++...
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHh
Confidence 567888888887765
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.05 E-value=0.0016 Score=51.72 Aligned_cols=64 Identities=25% Similarity=0.367 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 586 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+...|..+...+...|++++|+..++++++..|+++..+..++.+|...|++++|.+.+++..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3457888889999999999999999999999999999999999999999999999999999876
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.00 E-value=0.0022 Score=53.75 Aligned_cols=81 Identities=15% Similarity=0.037 Sum_probs=54.5
Q ss_pred HHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003868 538 GRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615 (790)
Q Consensus 538 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 615 (790)
|...|+...+ ..+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555553 22334566667777777777777777777664 2223 456777888888888888888888888888
Q ss_pred cCCCC
Q 003868 616 LMPHH 620 (790)
Q Consensus 616 ~~p~~ 620 (790)
+.|.+
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 76643
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.75 E-value=0.012 Score=51.31 Aligned_cols=112 Identities=10% Similarity=-0.091 Sum_probs=90.8
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHh----cCChHH
Q 003868 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR----AGKFSE 573 (790)
Q Consensus 498 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 573 (790)
+++++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999877 33333 666677778889999999998764 356778888888888 889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCC
Q 003868 574 AKDVIDSLPFKPSAPIWEALLAGCRI----HGNIDLGIQAAEQLFQLMP 618 (790)
Q Consensus 574 A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 618 (790)
|.+.|++.-...+...+..|...|.. .+|.++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999987434678888888888888 8999999999999988743
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.67 E-value=0.0019 Score=68.46 Aligned_cols=82 Identities=9% Similarity=0.048 Sum_probs=61.4
Q ss_pred cCChHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCC---cchHhhHH
Q 003868 568 AGKFSEAKDVIDSL---------PFKPSA-PIWEALLAGCRIHGNIDLGIQAAEQLFQL-----MPHHA---GTYVLLSN 629 (790)
Q Consensus 568 ~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~~ 629 (790)
.|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++. .|+++ .+|+.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35666666665543 123333 46888888899999999999999888764 44444 57889999
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 003868 630 MYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 630 ~~~~~g~~~~a~~~~~~m~~ 649 (790)
+|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998865
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.57 E-value=0.0049 Score=49.82 Aligned_cols=52 Identities=29% Similarity=0.463 Sum_probs=26.3
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCCc-chHhhHHHHHhcCChhHHHHHHHHHH
Q 003868 597 CRIHGNIDLGIQAAEQLFQLMPHHAG-TYVLLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 597 ~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
+...|++++|+..++++++..|+++. .+..++.+|...|++++|.+.+++..
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555555544 55555555555555555555555444
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.52 E-value=0.011 Score=47.63 Aligned_cols=79 Identities=13% Similarity=0.125 Sum_probs=59.3
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCCh
Q 003868 561 FIDLLCRAGKFSEAKDVIDSL-PFKP-SAP-IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRW 637 (790)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 637 (790)
....+.+.|++++|.+.+++. ...| +.. .|..+...+...|++++|+..++++++++|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 455677888888888888775 2334 556 88888889999999999999999999999998776632 444
Q ss_pred hHHHHHHHHH
Q 003868 638 DDAARVRKLM 647 (790)
Q Consensus 638 ~~a~~~~~~m 647 (790)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.46 E-value=0.053 Score=55.01 Aligned_cols=63 Identities=22% Similarity=0.184 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 586 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
++.+|.++.-.+...|+++.|...++++++++| +...|..++.++.-.|++++|.+.+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 445555555555555666666666666666654 234555666666666666666666665544
No 214
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.39 E-value=0.0063 Score=49.48 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=41.4
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHccc
Q 003868 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHG 547 (790)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 547 (790)
+...|..+...|...|++++|+..|++..+ ..|+. ..|..+..++...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666667777777777777777777766 34443 4566666677777777777777766543
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.34 E-value=0.016 Score=50.46 Aligned_cols=66 Identities=14% Similarity=0.004 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHhcC-C-CCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 584 KPSAPIWEALLAGCRIHG---NIDLGIQAAEQLFQLM-P-HHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 584 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.++..+...+..++.+.+ +.++|+.+++.+++.+ | ++...+..|+-+|.+.|++++|+++++.+.+
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 357777777777777776 6668888888888887 6 4567788888888999999999999888865
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.30 E-value=0.022 Score=60.25 Aligned_cols=97 Identities=9% Similarity=-0.085 Sum_probs=61.6
Q ss_pred HHccCCHHHHHHHHHHcccCC--CCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HHHHH
Q 003868 529 CNHAGLVKEGRRYFETMHGPY--GIPP----GEDHYARFIDLLCRAGKFSEAKDVIDSL---------PFKPSA-PIWEA 592 (790)
Q Consensus 529 ~~~~g~~~~a~~~~~~~~~~~--~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ 592 (790)
+...|++++|..++++..+.. -+.| ...+++.|..+|...|++++|+.++++. +..|+. .+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 344556666666655554321 1112 1345666667777777777777666644 234443 46888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhc-----CCCCCcchH
Q 003868 593 LLAGCRIHGNIDLGIQAAEQLFQL-----MPHHAGTYV 625 (790)
Q Consensus 593 ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~~ 625 (790)
|...|..+|++++|+.++++++++ .|+++.+-.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 889999999999999999998764 677765443
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.30 E-value=0.027 Score=54.63 Aligned_cols=87 Identities=13% Similarity=0.132 Sum_probs=71.2
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH-----hCCHHHHHHHHHHHHhcCCCC-CcchHhhHHHHHhc-CChhH
Q 003868 571 FSEAKDVIDSL-PFKPS---APIWEALLAGCRI-----HGNIDLGIQAAEQLFQLMPHH-AGTYVLLSNMYANL-GRWDD 639 (790)
Q Consensus 571 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 639 (790)
..+|...+++. .+.|+ ...|..|...|.. -|+.++|.+.|++++++.|+. ..+++.++..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34566666654 45666 4578888888888 499999999999999999975 99999999999985 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 003868 640 AARVRKLMRDRGVKKEPG 657 (790)
Q Consensus 640 a~~~~~~m~~~g~~~~~~ 657 (790)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998866654454
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.26 E-value=0.0074 Score=63.88 Aligned_cols=68 Identities=10% Similarity=0.039 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCC
Q 003868 556 DHYARFIDLLCRAGKFSEAKDVIDSL---------PFKPSA-PIWEALLAGCRIHGNIDLGIQAAEQLFQL-----MPHH 620 (790)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~ 620 (790)
.+++.|..+|...|++++|+.++++. +..|+. .+++.|...|..+|++++|+.++++++++ .|++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H 420 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45666666666666666666666544 234544 46888888999999999999999988764 5666
Q ss_pred Ccc
Q 003868 621 AGT 623 (790)
Q Consensus 621 ~~~ 623 (790)
+.+
T Consensus 421 p~~ 423 (433)
T 3qww_A 421 PYI 423 (433)
T ss_dssp HHH
T ss_pred hHH
Confidence 543
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.23 E-value=0.041 Score=55.78 Aligned_cols=154 Identities=14% Similarity=0.031 Sum_probs=105.2
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHH--hcCC---hHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHc---cC-----CHH
Q 003868 471 AANCVFNTMPNVDSVSWNAMIAALG--QHGN---GARAIELYEQMLKEGILPDRI-TFLTVLSACNH---AG-----LVK 536 (790)
Q Consensus 471 ~A~~~~~~~~~~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~---~g-----~~~ 536 (790)
++.......+ .+...|...+.+.. ..+. ..+|..+|++.++ ..|+.. .+..+..++.. .+ ...
T Consensus 182 e~~r~~~~~p-~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~ 258 (372)
T 3ly7_A 182 MQETLQKILP-HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLA 258 (372)
T ss_dssp HHHHHHHHSC-SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHhccCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHH
Confidence 3444444433 47788888877654 3333 4789999999999 688864 55555555431 11 111
Q ss_pred HHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003868 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615 (790)
Q Consensus 537 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 615 (790)
.....+.........+.+...|..+...+...|++++|...++++ .+.|+...|..+...+...|+.++|.+.+++++.
T Consensus 259 ~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 259 ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 111222222111134667788888888888889999999999987 4568888888888888999999999999999999
Q ss_pred cCCCCCcchHhhH
Q 003868 616 LMPHHAGTYVLLS 628 (790)
Q Consensus 616 ~~p~~~~~~~~l~ 628 (790)
++|..+ +|...-
T Consensus 339 L~P~~~-t~~~~~ 350 (372)
T 3ly7_A 339 LRPGAN-TLYWIE 350 (372)
T ss_dssp HSCSHH-HHHHHH
T ss_pred cCCCcC-hHHHHh
Confidence 999874 555443
No 220
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.21 E-value=0.00076 Score=69.51 Aligned_cols=419 Identities=12% Similarity=0.096 Sum_probs=219.0
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHHhhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 003868 80 DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL 159 (790)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 159 (790)
.+.+|+.|-.++...|.+.+|..-|-+. .|+..|.-+|.+..+.|.+++-+..+...++..- ++..=+.|+-++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHH
Confidence 4457888999999888888887766433 5667788899999999999998888877766533 334445777788
Q ss_pred hcchh-hhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCC----------------
Q 003868 160 ALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE---------------- 222 (790)
Q Consensus 160 ~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~---------------- 222 (790)
++.++ .+-. ... -.|+..-...+-+-+... |.++.|.-+|..+..
T Consensus 127 Ak~~rL~elE--efl-------~~~N~A~iq~VGDrcf~e---------~lYeAAKilys~isN~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 127 AKTNRLAELE--EFI-------NGPNNAHIQQVGDRCYDE---------KMYDAAKLLYNNVSNFGRLASTLVHLGEYQA 188 (624)
T ss_dssp HTSCSSSTTT--STT-------SCCSSSCTHHHHHHHHHS---------CCSTTSSTTGGGSCCCTTTSSSSSSCSGGGS
T ss_pred HhhCcHHHHH--HHH-------cCCCcccHHHHHHHHHHc---------cCHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 87766 3222 110 123333233333333333 555555555554431
Q ss_pred --------CCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHc
Q 003868 223 --------RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACAN 294 (790)
Q Consensus 223 --------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 294 (790)
.++.+|-.+-.+|+..+.+.-|.-.-- .+-.....+..++..|-.
T Consensus 189 AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGL---------------------------niIvhadeL~elv~~YE~ 241 (624)
T 3lvg_A 189 AVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGL---------------------------HIVVHADELEELINYYQD 241 (624)
T ss_dssp STTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHH---------------------------HHHCCSSCCSGGGSSSST
T ss_pred HHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcc---------------------------hhcccHHHHHHHHHHHHh
Confidence 245556666666666555544332221 111222234455666777
Q ss_pred cCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC----C-------ChhHHHHHHHHHH
Q 003868 295 SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE----R-------DLVSWNAILSAYV 363 (790)
Q Consensus 295 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~-------~~~~~~~li~~~~ 363 (790)
.|.+++-..+++..+. -.....-+++-|.-.|+|-. .++-++.++..-. | ....|.-++-.|.
T Consensus 242 ~G~f~ELIsLlEaglg-----lErAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~ 315 (624)
T 3lvg_A 242 RGYFEELITMLEAALG-----LERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 315 (624)
T ss_dssp TCCCTTSTTTHHHHTT-----STTCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHh
Confidence 7777777777766652 12335667777777777753 3444443333221 2 3446777777777
Q ss_pred HcCCHHHHHHHH-------------HHhcc--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003868 364 SAGLIDEAKSLF-------------EAMRE--RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428 (790)
Q Consensus 364 ~~g~~~~A~~~~-------------~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 428 (790)
+..+++.|.... .++.. .|+..|..-|+-|.+.. +..--+++.-+.. .+.++ .+++.+
T Consensus 316 ~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~-P~lL~DLL~vL~p-rlDh~-----RvV~~~ 388 (624)
T 3lvg_A 316 KYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK-PLLLNDLLMVLSP-RLDHT-----RAVNYF 388 (624)
T ss_dssp HHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSC-CTTSHHHHHHHCT-TCCST-----TTHHHH
T ss_pred cchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhC-hHHHHHHHHhccc-cCChH-----HHHHHH
Confidence 777777664321 11111 24444554455444432 1111112111110 11111 122223
Q ss_pred HccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhH------------HH-HHHHHHH
Q 003868 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS------------WN-AMIAALG 495 (790)
Q Consensus 429 ~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~------------~~-~li~~~~ 495 (790)
.+.|++...+.++.... -..+..+-.++-+.|....+++.-+...+.-..-|... +. .-...|.
T Consensus 389 ~k~~~LpLIkpYL~~Vq---~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYk 465 (624)
T 3lvg_A 389 SKVKQLPLVKPYLRSVQ---NHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFK 465 (624)
T ss_dssp HTTTCGGGGTGGGTSCC---CSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HhcCCchhhHHHHHHHH---HhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHH
Confidence 33333333322222111 12345566778888888888776666555444333222 22 2233456
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHH
Q 003868 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAK 575 (790)
Q Consensus 496 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 575 (790)
+++++++++.+.++ ..-|.-.+...+.+|+.+-+.++++-..+. | +.+.|.+.+-.+...=++|.++
T Consensus 466 kn~rw~qsi~l~Kk---------DklykDAietAa~S~~~elaeeLL~yFv~~-g---~~EcF~a~LytCYdLlrpDvVl 532 (624)
T 3lvg_A 466 GNNRWKQSVELCKK---------DSLYKDAMQYASESKDTELAEELLQWFLQE-E---KRECFGACLFTCYDLLRPDVVL 532 (624)
T ss_dssp TTCHHHHHSSCSST---------TCCTTGGGTTTTTCCCTTHHHHHHHHHHHH-C---STHHHHHHHHHTSSSSSCHHHH
T ss_pred hcccHHHHHHHHHh---------cccHHHHHHHHHHcCCHHHHHHHHHHHHHc-C---chHHHHHHHHHHhhccChHHHH
Confidence 67777777665432 112222334455666666666666665542 2 2344444444444444566666
Q ss_pred HHH
Q 003868 576 DVI 578 (790)
Q Consensus 576 ~~~ 578 (790)
++-
T Consensus 533 Ela 535 (624)
T 3lvg_A 533 ETA 535 (624)
T ss_dssp HHH
T ss_pred HHH
Confidence 663
No 221
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.18 E-value=0.26 Score=41.12 Aligned_cols=140 Identities=10% Similarity=0.029 Sum_probs=96.4
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHH
Q 003868 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574 (790)
Q Consensus 495 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 574 (790)
.-.|..++..++..+.... .+..-|+-++--...+-+=+-..+.++.+-+-|.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 4467777778887777653 23334444444444444445555556555443222 245666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003868 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653 (790)
Q Consensus 575 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 653 (790)
..-+-.++ .+....+.-+.....+|+-+.-.+++..++...|.++....-++++|.+.|+..+|.+++++.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 66665554 233345566778889999999999999987778888999999999999999999999999999999985
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.82 E-value=0.12 Score=60.24 Aligned_cols=98 Identities=13% Similarity=0.072 Sum_probs=59.4
Q ss_pred HhcCCHHHHHH-HHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 003868 464 ARCGVVEAANC-VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542 (790)
Q Consensus 464 ~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 542 (790)
...+++++|.+ ++..++. ......++..+.+.|..++|+++.+.-. .-.......|++++|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHH
Confidence 34567777776 5544431 1222556666677777777776553111 1122334567777777775
Q ss_pred HHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 003868 543 ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582 (790)
Q Consensus 543 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 582 (790)
+.+ .+...|..+.+.+.+.|+++.|++.|.+++
T Consensus 676 ~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 676 TDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp TTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred Hhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 543 245677778888888888888888777764
No 223
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.74 E-value=0.0018 Score=66.76 Aligned_cols=400 Identities=12% Similarity=0.075 Sum_probs=205.7
Q ss_pred chhHHHHHHhhcCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCCCChHHHHHHHHHH
Q 003868 12 LANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91 (790)
Q Consensus 12 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 91 (790)
+++.|..++.++.+.+. .+.....+..-.+. ..++..=+.|+-+|++.+++.+-++++.. ||..--..+-.-|
T Consensus 82 Dps~y~eVi~~A~~~~~--~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~~---~N~A~iq~VGDrc 154 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGN--WEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRC 154 (624)
T ss_dssp CCCSSSHHHHHTTTSSC--CTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTSC---CSSSCTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCC--HHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHcC---CCcccHHHHHHHH
Confidence 45667778888887777 67666655544443 33444556788888888887653333222 5555555666777
Q ss_pred hcCCChHHHHHHHhhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh-hhhh--
Q 003868 92 SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE-EEKQ-- 168 (790)
Q Consensus 92 ~~~g~~~~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~~-- 168 (790)
...|.++.|+-+|..++. |.-|...+++.|++..|.+.-+.. -+..||-.+-.+|...++ ..+.
T Consensus 155 f~e~lYeAAKilys~isN-------~akLAstLV~L~~yq~AVdaArKA------ns~ktWKeV~~ACvd~~EfrLAqic 221 (624)
T 3lvg_A 155 YDEKMYDAAKLLYNNVSN-------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC 221 (624)
T ss_dssp HHSCCSTTSSTTGGGSCC-------CTTTSSSSSSCSGGGSSTTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHH
T ss_pred HHccCHHHHHHHHHhCcc-------HHHHHHHHHHHHHHHHHHHHHHhc------CChhHHHHHHHHHhCchHHHHHHHh
Confidence 777777777777776654 333333334444444433322211 133445555545544443 2222
Q ss_pred -----------------------hh---hHHHHHHHhCC-CCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHc-cC
Q 003868 169 -----------------------CM---QMHCTVVKSGT-GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFD-EM 220 (790)
Q Consensus 169 -----------------------~~---~~~~~~~~~g~-~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~-~~ 220 (790)
+. .+.+... |+ .....+++-|--.|+|-.+ ..+-+=.++|. ++
T Consensus 222 GLniIvhadeL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY~P-------eKlmEHlklf~sri 292 (624)
T 3lvg_A 222 GLHIVVHADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKFKP-------QKMREHLELFWSRV 292 (624)
T ss_dssp HHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSSCT-------THHHHHHTTSSSSS
T ss_pred cchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHhc
Confidence 00 2221111 22 2445566777777777411 22222222222 22
Q ss_pred CCC-------CeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHH-hCccCChhhHHHHHHHH
Q 003868 221 PER-------DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLM-LRIQLDEFTYTSVISAC 292 (790)
Q Consensus 221 ~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~-~~~~p~~~t~~~ll~~~ 292 (790)
.-| ....|..++-.|.+-.+++.|... |.+....+|..-.- .+ ..-.+|...|-..|+.|
T Consensus 293 NipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~h~~F---------kdii~KVaN~EiyYKAi~FY 360 (624)
T 3lvg_A 293 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQF---------KDIITKVANVELYYRAIQFY 360 (624)
T ss_dssp CCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCHHHHCCGGGG---------TTTGGGCSCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCChhhccHHHH---------HHHHHHcchHHHHHHHHHHH
Confidence 222 455677777777777777766543 22221111110000 00 01124555566666666
Q ss_pred HccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHH-HHHHHHHHcCCHHHH
Q 003868 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWN-AILSAYVSAGLIDEA 371 (790)
Q Consensus 293 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~-~li~~~~~~g~~~~A 371 (790)
.... +..-..++.-+. +.++.+ ..++++.|.|++......+......|...-| ++-..|....+++.-
T Consensus 361 L~e~-P~lL~DLL~vL~-----prlDh~-----RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~L 429 (624)
T 3lvg_A 361 LEFK-PLLLNDLLMVLS-----PRLDHT-----RAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQAL 429 (624)
T ss_dssp TTSC-CTTSHHHHHHHC-----TTCCST-----TTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHhC-hHHHHHHHHhcc-----ccCChH-----HHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHH
Confidence 5432 111222222221 222221 3456677777777777777777766555444 555677777776654
Q ss_pred HHH------------HHHhccCChhHHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHH
Q 003868 372 KSL------------FEAMRERNLLSWTVM-ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438 (790)
Q Consensus 372 ~~~------------~~~m~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 438 (790)
... -.++.+....-+..+ ...|.+++++++++.+.++ .+ .|.-.|...+.+|+.+-+.
T Consensus 430 R~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dk------lykDAietAa~S~~~elae 500 (624)
T 3lvg_A 430 RTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---DS------LYKDAMQYASESKDTELAE 500 (624)
T ss_dssp HHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---TC------CTTGGGTTTTTCCCTTHHH
T ss_pred HHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---cc------cHHHHHHHHHHcCCHHHHH
Confidence 332 223333344334333 4567778888888776431 11 2333445567788888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 003868 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475 (790)
Q Consensus 439 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 475 (790)
++++..++.|- ...+.+.+-.+...=++|.+.++
T Consensus 501 eLL~yFv~~g~---~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 501 ELLQWFLQEEK---RECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHHHHHCS---THHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHHHcCc---hHHHHHHHHHHhhccChHHHHHH
Confidence 88888888763 22333333333333344444443
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.43 E-value=0.37 Score=55.87 Aligned_cols=103 Identities=16% Similarity=0.129 Sum_probs=59.0
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHH
Q 003868 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540 (790)
Q Consensus 461 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 540 (790)
.....+|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 34556777777777776653 456777778888888888888877776643 3334444444555554444
Q ss_pred HHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 003868 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581 (790)
Q Consensus 541 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 581 (790)
+-+..... | .++.-..+|.+.|++++|.+++.++
T Consensus 729 ~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 729 LAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 43333321 1 1233333455556666665555554
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.41 E-value=0.074 Score=43.34 Aligned_cols=74 Identities=11% Similarity=0.153 Sum_probs=54.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcch
Q 003868 554 GEDHYARFIDLLCRAGKFSEAKDVIDSL-----P----FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624 (790)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 624 (790)
+..-+-.|...+.+.|+++.|...++.. + -.+...++..|..++.+.|+++.|...+++++++.|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3444556667777777777777766653 1 123456888999999999999999999999999999996664
Q ss_pred Hhh
Q 003868 625 VLL 627 (790)
Q Consensus 625 ~~l 627 (790)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 444
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.26 E-value=0.14 Score=40.61 Aligned_cols=77 Identities=12% Similarity=0.016 Sum_probs=58.9
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHh
Q 003868 552 PPGEDHYARFIDLLCRAGK---FSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626 (790)
Q Consensus 552 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 626 (790)
+++...+..+..++...++ .++|..++++. ...| +...+..+...+...|++++|+..++++++.+|+ ......
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHH
Confidence 4567778888888765554 68999998876 3445 5667888888899999999999999999999998 444444
Q ss_pred hHH
Q 003868 627 LSN 629 (790)
Q Consensus 627 l~~ 629 (790)
+..
T Consensus 82 i~~ 84 (93)
T 3bee_A 82 IIE 84 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.99 E-value=0.51 Score=42.09 Aligned_cols=129 Identities=16% Similarity=0.133 Sum_probs=75.1
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHH
Q 003868 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540 (790)
Q Consensus 461 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 540 (790)
+...++|+++.|.++.+.+ .+...|..|......+|+.+-|.+.|.+... |..+.-.|.-.|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445667777777776655 3566777777777777777777777776543 3444455555666665555
Q ss_pred HHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003868 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613 (790)
Q Consensus 541 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 613 (790)
+-+....+ | -++.-...+.-.|+++++.+++.+.+.-|... -....+|-.+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 44433322 1 13444445556777777777777765333221 1123356666666665543
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.78 E-value=0.15 Score=44.32 Aligned_cols=71 Identities=13% Similarity=0.107 Sum_probs=48.2
Q ss_pred CChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcc
Q 003868 553 PGEDHYARFIDLLCRAG---KFSEAKDVIDSL-PFK-P--SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623 (790)
Q Consensus 553 p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 623 (790)
++..+.-.+..++.+.+ +++++..++++. ... | ....+-.|.-+|.+.|++++|.+.++++++.+|+|..+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 45555555555666655 444566555544 112 3 23456677778899999999999999999999998443
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.14 E-value=0.3 Score=39.59 Aligned_cols=64 Identities=16% Similarity=-0.007 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-------CCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM-------PHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 586 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+..-+..|...+...|+++.|...++++++.. +..+..+..|+.+|.+.|++++|..++++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45556788899999999999999999998763 23456789999999999999999999999875
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.09 E-value=0.24 Score=41.39 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcC-C-CCCcchHhhHHHHHhcCChhHHHHHHHHHH
Q 003868 606 GIQAAEQLFQLM-P-HHAGTYVLLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 606 a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
++.+++.++... | ..-.....|+-++.+.|++++|.++.+.+.
T Consensus 57 GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 57 GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444444433 2 122334444455555555555555555443
No 231
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.80 E-value=14 Score=40.71 Aligned_cols=266 Identities=11% Similarity=-0.003 Sum_probs=144.1
Q ss_pred CCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhcc---CChhHHHHHHHHHH
Q 003868 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE---RNLLSWTVMISGLA 394 (790)
Q Consensus 318 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~ 394 (790)
+.....-+.-+..+.+.+++......+.. ...+...-.....+....|+..+|......+-- ......+.
T Consensus 69 p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~------ 141 (618)
T 1qsa_A 69 PPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDK------ 141 (618)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHH------
T ss_pred hhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHH------
Confidence 33344555666777888888888887776 434555555667778888887666665554422 12233333
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCCHHHHH
Q 003868 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS-LSAGNALITMYARCGVVEAAN 473 (790)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~ 473 (790)
+|....+.|...+...+.- +......|+...|..+...+ +++ ......++..+.+-..+ .
T Consensus 142 ----------l~~~~~~~g~lt~~~~~~R-~~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~~p~~~---~ 202 (618)
T 1qsa_A 142 ----------LFSVWRASGKQDPLAYLER-IRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANNPNTV---L 202 (618)
T ss_dssp ----------HHHHHHHTTCSCHHHHHHH-HHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHCGGGH---H
T ss_pred ----------HHHHHHHCCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHhChHhH---H
Confidence 4444443332222222222 22334455566665554432 222 22334444444433333 3
Q ss_pred HHHhcCCCCCHh---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH----HHHHHHHHccCCHHHHHHHHHHcc
Q 003868 474 CVFNTMPNVDSV---SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF----LTVLSACNHAGLVKEGRRYFETMH 546 (790)
Q Consensus 474 ~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~a~~~~g~~~~a~~~~~~~~ 546 (790)
....... ++.. .+..-+.-+++. +.+.|..+|....+.+ ..+.... ..+.......+...++...+....
T Consensus 203 ~~~~~~~-~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~ 279 (618)
T 1qsa_A 203 TFARTTG-ATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAI 279 (618)
T ss_dssp HHHHHSC-CCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHH
T ss_pred HHHhccC-CChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Confidence 3333222 2221 122223333443 7899999999887643 2233222 222223334453556666666644
Q ss_pred cCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-C-HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003868 547 GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP-S-APIWEALLAGCRIHGNIDLGIQAAEQLFQ 615 (790)
Q Consensus 547 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 615 (790)
.. .++.....-.+....+.|+++.|...|+.|+..+ + ..-.--+..+....|+.++|..+++++.+
T Consensus 280 ~~---~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 280 MR---SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HT---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cc---CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 32 2343334444555567899999999999996443 2 33233455677788999999999999875
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.80 E-value=1.4 Score=37.43 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHhcCCCC-CcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 584 KPSAPIWEALLAGCRIHG---NIDLGIQAAEQLFQLMPHH-AGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 584 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.|+..+--.+..++.+.. +..+++.+++.++...|.+ -.....|+-++.+.|++++|+++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 456665555666665554 4457788888888777743 35566788888888888888888888865
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.66 E-value=5.2 Score=35.58 Aligned_cols=129 Identities=14% Similarity=0.088 Sum_probs=87.6
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 003868 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506 (790)
Q Consensus 427 ~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 506 (790)
.....|+++.|.++.+.+ .+...|..|.+...+.|+++-|++.|....+-+ .+.-.|.-.|+.++-.++
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~-----~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHSFD-----KLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH-----HHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHH-----HHHHHHHHhCCHHHHHHH
Confidence 345678888888887665 457789999999999999999999999887533 333345556777666655
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 003868 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582 (790)
Q Consensus 507 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 582 (790)
-+.....| -++....++...|+++++.++|.+..+ -|.. +-.....|..+.|.++.++++
T Consensus 83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r----~~eA------~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS----LPLA------YAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC----HHHH------HHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC----hHHH------HHHHHHcCcHHHHHHHHHHhC
Confidence 55554443 245555667778999999999977543 1211 111223566777888888775
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.58 E-value=0.52 Score=52.95 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=50.7
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHH
Q 003868 594 LAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647 (790)
Q Consensus 594 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 647 (790)
...|...|+++.|+++++++...-|.+..+|..|+.+|...|+|+.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 455778899999999999999999999999999999999999999999999987
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.55 E-value=0.21 Score=48.44 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=33.1
Q ss_pred HHHHHHHHHHh-----cCChHHHHHHHHhC-CCCC--CHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCC
Q 003868 557 HYARFIDLLCR-----AGKFSEAKDVIDSL-PFKP--SAPIWEALLAGCRI-HGNIDLGIQAAEQLFQLMPH 619 (790)
Q Consensus 557 ~~~~li~~~~~-----~g~~~~A~~~~~~~-~~~p--~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~p~ 619 (790)
.|..|...|.+ -|+.++|.+.|++. .+.| +..++..+...++. .|+.+++.+.+++++...|.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 44444444444 25555555555553 2333 24444555555544 36666666666666666554
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.19 E-value=6 Score=33.17 Aligned_cols=62 Identities=8% Similarity=0.037 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCC
Q 003868 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449 (790)
Q Consensus 387 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~ 449 (790)
+.-++.+...|.-++-.+++.++.. +.+|+...+..+..||.+.|+..++.+++.++-+.|+
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3344455555556666666666433 3466666777777777777777777777777776664
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.99 E-value=1.8 Score=36.14 Aligned_cols=35 Identities=14% Similarity=0.072 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcch
Q 003868 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624 (790)
Q Consensus 590 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 624 (790)
.-.|.-++.+.|+++.|.+.++.+++.+|+|..+.
T Consensus 77 lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 77 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 44566778899999999999999999999985443
No 238
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=88.79 E-value=31 Score=37.83 Aligned_cols=93 Identities=8% Similarity=0.009 Sum_probs=60.9
Q ss_pred ChhHHHHHhhhCCC-CC-hHHHHHHHHHHhcCCChHHHHHHHhhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 003868 65 KLVYARTLFDEIPQ-PD-IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR 142 (790)
Q Consensus 65 ~~~~A~~~~~~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 142 (790)
...+....+++.+. |- ...-+.-+..+.+.+++.....++.. +. .+...-.....+....|+..+|......+-.
T Consensus 54 ~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p--~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~ 130 (618)
T 1qsa_A 54 PAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-KP--GTTEAQCNYYYAKWNTGQSEEAWQGAKELWL 130 (618)
T ss_dssp CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CC--SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Confidence 55666666666554 21 23345567777888899988887776 32 4555555677788888998888888888877
Q ss_pred CCCCCChhhHHHHHHHHhc
Q 003868 143 DDVKPDNFTFTSVLSALAL 161 (790)
Q Consensus 143 ~g~~p~~~t~~~ll~~~~~ 161 (790)
.|- .....+..++..+..
T Consensus 131 ~~~-~~p~~c~~l~~~~~~ 148 (618)
T 1qsa_A 131 TGK-SQPNACDKLFSVWRA 148 (618)
T ss_dssp CSS-CCCTHHHHHHHHHHH
T ss_pred CCC-CCcHHHHHHHHHHHH
Confidence 662 234455556655553
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.32 E-value=6.1 Score=33.88 Aligned_cols=107 Identities=15% Similarity=0.170 Sum_probs=62.9
Q ss_pred CCCHhHHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCChh----hHHHHHHHHHccCCHHHHHHHHHHcccCCC
Q 003868 481 NVDSVSWNAMIAALGQHGNG------ARAIELYEQMLKEGILPDRI----TFLTVLSACNHAGLVKEGRRYFETMHGPYG 550 (790)
Q Consensus 481 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 550 (790)
..|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|..+.--|+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA-------------------- 68 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFA-------------------- 68 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHH--------------------
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHH--------------------
Confidence 35778888888888777888 7778888877764 566531 1111111111
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 003868 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP--FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 551 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
. +...++.++|.++|+.+- .+.=..+|.....--.++|+++.|.+++.+++.+.|...
T Consensus 69 ---------~----~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 69 ---------E----LKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp ---------H----HHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred ---------H----HHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 0 011133444444443330 011155677777767778888888888888888877653
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=87.55 E-value=1.8 Score=37.16 Aligned_cols=56 Identities=9% Similarity=-0.033 Sum_probs=44.5
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 003868 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKK 654 (790)
Q Consensus 599 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 654 (790)
..+|.++|.++|+.++.+...-+..+...+..-.+.|+.+.|.+++.+....+.+|
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 33899999999999988844445566666777778999999999999998866543
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.22 E-value=1.9 Score=36.06 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHhcCCC-CCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 584 KPSAPIWEALLAGCRIHG---NIDLGIQAAEQLFQLMPH-HAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 584 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.|+..+--.+..++.+.. +..+|+.+++.++...|. .-..+..|+-++.+.|++++|+++.+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 345555444555555443 334677777777766663 245566777777777777777777777754
No 242
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.68 E-value=26 Score=34.53 Aligned_cols=166 Identities=13% Similarity=0.057 Sum_probs=95.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHH----HHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003868 355 WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK----LFSQMRLEGFKPCDYAFAGAITSCAG 430 (790)
Q Consensus 355 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~g~~p~~~t~~~ll~~~~~ 430 (790)
|.++..-|.+++++++|.+++..- ...+.+.|+...|-+ +.+-..+.+++++..+...++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 444556666677777776665432 223344454544443 45555667888888888888777765
Q ss_pred cCChH-HHHHHHHHHH----HhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhc---CCh
Q 003868 431 LGALE-NGRQLHAQLV----HSG--YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH---GNG 500 (790)
Q Consensus 431 ~g~~~-~a~~i~~~~~----~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~ 500 (790)
...-+ .-.++...++ +.| -.-++.....+...|.+.|++.+|+..|-.-...|...+..++.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 43221 1233333443 232 2246778889999999999999999888643323455555554444433 443
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcc
Q 003868 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546 (790)
Q Consensus 501 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 546 (790)
.++--.+-+ + +--|.-.|++..|..+|+...
T Consensus 185 ~e~dlf~~R--------------a-VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 185 STVAEFFSR--------------L-VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHH--------------H-HHHHHHTTBHHHHHHHHHHHH
T ss_pred chHHHHHHH--------------H-HHHHHHhcCHHHHHHHHHHHH
Confidence 332221111 1 123445678888888777654
No 243
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.64 E-value=27 Score=34.69 Aligned_cols=126 Identities=8% Similarity=-0.046 Sum_probs=71.7
Q ss_pred HHhCccCChhhHHHHHHHHHccCChH-HHHHHHHHHHHhcCCCC--CCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCC
Q 003868 274 LMLRIQLDEFTYTSVISACANSGLFR-LGKQVHAYLLRTEAKPT--PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350 (790)
Q Consensus 274 ~~~~~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~ 350 (790)
.+.++++|..+...++..+.....-+ .-..+...+++.....| ..-|+.....+...|.+.+++.+|+..|-.-.++
T Consensus 86 ~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~ 165 (336)
T 3lpz_A 86 RQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKE 165 (336)
T ss_dssp HHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTT
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCc
Confidence 45678888888888887776555321 12334444443322122 3446777788888999999999999888532333
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003868 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410 (790)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (790)
.+..+..++.-+...+...++-- .....+-.|.-.++...|..+|+...
T Consensus 166 s~~~~a~mL~ew~~~~~~~e~dl-----------fiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 166 SPEVLARMEYEWYKQDESHTAPL-----------YCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHHHHHHHHHHTSCGGGHHH-----------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCccHHH-----------HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34566666655555443221111 11222334555566777766665544
No 244
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.37 E-value=28 Score=34.59 Aligned_cols=166 Identities=13% Similarity=0.083 Sum_probs=92.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHH----HHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003868 355 WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL----KLFSQMRLEGFKPCDYAFAGAITSCAG 430 (790)
Q Consensus 355 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~----~~~~~m~~~g~~p~~~t~~~ll~~~~~ 430 (790)
|.++..-|.+.+++++|.+++..- ...+.+.|+...|- -+++-..+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 344555666677777776664432 22333444444433 334555667788888888777777766
Q ss_pred cCChH-HHHHHHHHHH----HhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHH
Q 003868 431 LGALE-NGRQLHAQLV----HSG--YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503 (790)
Q Consensus 431 ~g~~~-~a~~i~~~~~----~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 503 (790)
...-+ .=..+...++ +.| -.-+......+...|.+.+++.+|+..|-.-.++.+..+..|+--+...+...++
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH
Confidence 55422 1122333333 333 3346778888999999999999999988543333345665554443333322211
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcc
Q 003868 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546 (790)
Q Consensus 504 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 546 (790)
|...-.++ --|...+++..|...|+...
T Consensus 187 --------------dlfiaRaV-L~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 187 --------------PLYCARAV-LPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp --------------HHHHHHHH-HHHHHTTCHHHHHHHHHHHH
T ss_pred --------------HHHHHHHH-HHHHHhCCHHHHHHHHHHHH
Confidence 11111222 23455667777777655543
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.13 E-value=17 Score=38.24 Aligned_cols=159 Identities=12% Similarity=0.083 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHhhCCC----C-----ChhHHHHHHHHHHHcCCHHHHHHHHHHhcc-----C-C----h
Q 003868 323 VNNALVTLYWKCGKVNEARDIFNQMPE----R-----DLVSWNAILSAYVSAGLIDEAKSLFEAMRE-----R-N----L 383 (790)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~f~~m~~----~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~-~----~ 383 (790)
+...|...|...|++.+|.+++..+.. . -+..+...+..|...+++.+|..+++++.. . + .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 446788999999999999999988752 1 134566778889999999999999888742 1 1 1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHH----HHHHccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 003868 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAI----TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458 (790)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll----~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~ 458 (790)
..|...+..+...+++.+|-..|.+.... ...-|...+..++ ....-.+.-..-..+.....+...-++...+..
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~ 298 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQES 298 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHH
Confidence 35677788888899999999888877542 1112222222111 111111111112222233333333456778888
Q ss_pred HHHHHHhc--CCHHHHHHHHhcCCC
Q 003868 459 LITMYARC--GVVEAANCVFNTMPN 481 (790)
Q Consensus 459 li~~y~~~--g~~~~A~~~~~~~~~ 481 (790)
|+.+|... .+++...+.|.....
T Consensus 299 L~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 299 LVKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp HHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred HHHHHHhchHhhhHHHHHHHHHHhc
Confidence 99998764 467888888876554
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.14 E-value=1.5 Score=45.57 Aligned_cols=68 Identities=19% Similarity=0.131 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh-----CCCccCCc
Q 003868 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD-----RGVKKEPG 657 (790)
Q Consensus 590 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~ 657 (790)
...++.++...|+.+++...++.++..+|-+...|..|+.+|.+.|+..+|.+.|+...+ .|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 445667778889999999999999999999988999999999999999999998888743 47776654
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.47 E-value=40 Score=33.20 Aligned_cols=126 Identities=10% Similarity=-0.015 Sum_probs=66.9
Q ss_pred HHhCccCChhhHHHHHHHHHccCChH-HHHHHHHHHHHhcCCCC--CCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCC
Q 003868 274 LMLRIQLDEFTYTSVISACANSGLFR-LGKQVHAYLLRTEAKPT--PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350 (790)
Q Consensus 274 ~~~~~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~ 350 (790)
.+.++++|..+...++..+.....-+ .-.++...+++.....+ ..-++.....+...|.+.|++.+|+..|-.-...
T Consensus 84 ~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~ 163 (312)
T 2wpv_A 84 DLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHD 163 (312)
T ss_dssp HHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHH
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCc
Confidence 44577788777777777665533111 12233333333221122 2336777888888888888888888877633323
Q ss_pred ChhHHHHHHHHHHHc---CCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003868 351 DLVSWNAILSAYVSA---GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410 (790)
Q Consensus 351 ~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (790)
|...+..++.-+... |...++--++ ...+-.|.-.|+...|..+|+...
T Consensus 164 s~~~~a~~l~~w~~~~~~~~~~e~dlf~-----------~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 164 SMIKYVDLLWDWLCQVDDIEDSTVAEFF-----------SRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHH-----------HHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCCcchHHHHH-----------HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 455565555554444 4433321111 112233444555666666665543
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=82.26 E-value=22 Score=39.95 Aligned_cols=52 Identities=10% Similarity=0.045 Sum_probs=38.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHc
Q 003868 492 AALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETM 545 (790)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~ 545 (790)
.-+...|+++.|+++-++... ..|+. .||..|..+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 345567778888888877777 46665 57778888888888888887777766
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.56 E-value=62 Score=38.76 Aligned_cols=141 Identities=16% Similarity=0.067 Sum_probs=77.4
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--------------------
Q 003868 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV-------------------- 482 (790)
Q Consensus 423 ~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-------------------- 482 (790)
.++..+...+..+.+.++... .+.+....-.+..+|..+|++++|.+.|++....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 345556666666666655433 2334444455677888889999999998876420
Q ss_pred ------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh---h--hHHHHHHHHHccCCHHHHHHHHHHcccCCCC
Q 003868 483 ------DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR---I--TFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551 (790)
Q Consensus 483 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 551 (790)
-..-|..++..|-++|.++.++++-+...+.. .++. . .|..+..++...|++++|...+-.+...
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~-~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~--- 967 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK-ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT--- 967 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC-CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---
Confidence 01124555566666666666666655555431 1121 1 2455556666666666666655554321
Q ss_pred CCChhHHHHHHHHHHhcCChH
Q 003868 552 PPGEDHYARFIDLLCRAGKFS 572 (790)
Q Consensus 552 ~p~~~~~~~li~~~~~~g~~~ 572 (790)
.-.......||..++..|.++
T Consensus 968 ~~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 968 PLKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp SSCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHhCCChh
Confidence 122344555555555555443
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=79.28 E-value=9.8 Score=33.29 Aligned_cols=26 Identities=19% Similarity=0.132 Sum_probs=21.9
Q ss_pred cchHhhHHHHHhcCChhHHHHHHHHH
Q 003868 622 GTYVLLSNMYANLGRWDDAARVRKLM 647 (790)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~a~~~~~~m 647 (790)
+.-..++.+|.+.|++++|..+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 45567899999999999999998864
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=79.27 E-value=6.2 Score=31.08 Aligned_cols=64 Identities=14% Similarity=0.214 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHH
Q 003868 499 NGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564 (790)
Q Consensus 499 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 564 (790)
+.-+..+-++.+....+.|++....+.+.||.+.+++.-|.++|+.++.+ ..+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHHH
Confidence 44466667777777789999999999999999999999999999988764 33445567777653
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=79.25 E-value=9.4 Score=30.06 Aligned_cols=49 Identities=18% Similarity=0.273 Sum_probs=40.1
Q ss_pred hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhH
Q 003868 580 SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628 (790)
Q Consensus 580 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 628 (790)
.+.+-|++.+..+.+.+|++.+|+..|.++++-+...-.+...+|-.++
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 4457799999999999999999999999999998876544455676664
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=78.19 E-value=7.5 Score=34.03 Aligned_cols=29 Identities=10% Similarity=0.206 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 003868 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFK 584 (790)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 584 (790)
+.---+..+|.+.|+.++|+.+++..|.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 33344666777788888888888777644
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=76.95 E-value=12 Score=31.30 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 003868 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 588 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
..+--|.-++.+.|+++.|.+..+.+++.+|+|.
T Consensus 79 d~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 79 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 3455667778888999999999999999999884
No 255
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.39 E-value=26 Score=27.46 Aligned_cols=86 Identities=19% Similarity=0.081 Sum_probs=57.7
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003868 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512 (790)
Q Consensus 433 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 512 (790)
..++|..|-+.+...+. ...+--.=+..+...|++++|..+.+...-||...|-+|.. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34566666666655543 22222222344567899999999999999999999988754 467888888887777777
Q ss_pred cCCCCChhhHH
Q 003868 513 EGILPDRITFL 523 (790)
Q Consensus 513 ~g~~p~~~t~~ 523 (790)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 45444443
No 256
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.65 E-value=27 Score=27.38 Aligned_cols=86 Identities=16% Similarity=0.099 Sum_probs=55.2
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003868 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512 (790)
Q Consensus 433 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 512 (790)
..++|..|-+.+...+. ...+--.=+..+...|++++|..+.+...-||...|-+|.. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34566666666655543 22222222344567899999999999998899999987755 456777777777767766
Q ss_pred cCCCCChhhHH
Q 003868 513 EGILPDRITFL 523 (790)
Q Consensus 513 ~g~~p~~~t~~ 523 (790)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
No 257
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=75.48 E-value=1.2e+02 Score=34.84 Aligned_cols=250 Identities=15% Similarity=0.078 Sum_probs=116.5
Q ss_pred HHHCCCHHHHHHHHhhCCC----CCh--hHHHHHHHHHHHcCCHHHHHHHHHHhcc-CC--------h--hHHHHHHHHH
Q 003868 331 YWKCGKVNEARDIFNQMPE----RDL--VSWNAILSAYVSAGLIDEAKSLFEAMRE-RN--------L--LSWTVMISGL 393 (790)
Q Consensus 331 ~~~~g~~~~A~~~f~~m~~----~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~--------~--~~~~~li~~~ 393 (790)
....|+.++++.+++.... .+. ..-..+.-|....|..+++..++..... .+ . ..-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4455666777777766543 121 1222333445556655566665554332 22 1 1122333333
Q ss_pred HhcCC-hHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH--hcCC
Q 003868 394 AQNGY-GEEGLKLFSQMRLEGFKPCDYAFA--GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA--RCGV 468 (790)
Q Consensus 394 ~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~--~~g~ 468 (790)
+-.|. -+++.+.+..+....- +...... ++...+...|+-+....++..+.+.. +..+...++-+.+ -.|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 33332 2455666666554321 1111111 22223445566666666666665432 2223333333333 4566
Q ss_pred HHHHHHHHhcCCC-CCH-hHHH---HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH--HHHccCCHHHHHHH
Q 003868 469 VEAANCVFNTMPN-VDS-VSWN---AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS--ACNHAGLVKEGRRY 541 (790)
Q Consensus 469 ~~~A~~~~~~~~~-~~~-~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~ 541 (790)
.+.+..+.+.+.. .+. .-|. ++.-+|+-.|+.....++++.+... ++...-...+. +....|+.+.+.++
T Consensus 540 ~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 540 QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 6666655555432 222 2222 2334556667765555577777653 22222222222 33345555555666
Q ss_pred HHHcccCCCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHhCCCCCCHHH
Q 003868 542 FETMHGPYGIPPGEDHYARFIDLLCRAGKF-SEAKDVIDSLPFKPSAPI 589 (790)
Q Consensus 542 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~p~~~~ 589 (790)
+..+.+. ..|.+..-.++.-+....|.. .+|.+.+..+...+|..+
T Consensus 617 v~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~V 663 (963)
T 4ady_A 617 VQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFV 663 (963)
T ss_dssp TTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHH
Confidence 6555542 234444444444444445543 456666666643444443
No 258
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=74.11 E-value=52 Score=29.87 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=27.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003868 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512 (790)
Q Consensus 451 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 512 (790)
++..+-...+.++.+.|..+....+.+.+.+++...-...+.++.+.+. .++...+.++.+
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 3444444444555554544333333333334444444444555555443 334444444443
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=71.02 E-value=47 Score=28.13 Aligned_cols=71 Identities=10% Similarity=0.102 Sum_probs=45.5
Q ss_pred CCChhHHHHHHHHHHhcCChH---HHHHHHHhC-CCCC-CH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc
Q 003868 552 PPGEDHYARFIDLLCRAGKFS---EAKDVIDSL-PFKP-SA-PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622 (790)
Q Consensus 552 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~~~p-~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 622 (790)
.|+..+--.+..++.+..+.+ ++..++++. ...| +. ...--|.-++.+.|+++.|.+..+.+++.+|+|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 455555555555666655443 344444443 1123 22 23445667889999999999999999999999943
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=70.98 E-value=45 Score=39.94 Aligned_cols=52 Identities=13% Similarity=0.066 Sum_probs=26.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcc
Q 003868 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546 (790)
Q Consensus 490 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 546 (790)
++..+...|.++-|.++..- +.-+...-..+..++...|++++|.++|++..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 44455555665555443321 22233332334455666677777777776654
No 261
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=70.50 E-value=62 Score=30.75 Aligned_cols=50 Identities=4% Similarity=-0.009 Sum_probs=20.7
Q ss_pred HHHHHhcCChhHHHHHhhhCCCCChH---HHHHHHHHHhcCCChHHHHHHHhh
Q 003868 57 IDIYCKSLKLVYARTLFDEIPQPDIV---ARTTLIAAYSASDNVKLAREMFNK 106 (790)
Q Consensus 57 l~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~ 106 (790)
|...++.|+++....+++.-..++.. ...+.+...+..|+.+-...+++.
T Consensus 9 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 33344445555555554443322111 111233334445555555555543
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=70.18 E-value=13 Score=31.11 Aligned_cols=63 Identities=14% Similarity=0.206 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHH
Q 003868 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564 (790)
Q Consensus 500 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 564 (790)
.-+..+-++.+....+.|++......+.+|.+.+++.-|.++|+.++.+ ..+...+|..+++-
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE 131 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence 4456666667777789999999999999999999999999999998864 44456678777653
No 263
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.92 E-value=1.1e+02 Score=31.90 Aligned_cols=96 Identities=7% Similarity=0.061 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHccCCHHHHHHHHHHcccC-C--CCCCC--h
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-----ITFLTVLSACNHAGLVKEGRRYFETMHGP-Y--GIPPG--E 555 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~--~~~p~--~ 555 (790)
....|...|-..|++.+|..++.++...-...+. ..+...+..|...+++.+|..+++++... + ...|+ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3456778888899999999999998743222222 25666778899999999999999886421 1 11222 3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC
Q 003868 556 DHYARFIDLLCRAGKFSEAKDVIDSL 581 (790)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~~ 581 (790)
..|.+.+..+...+++.+|-..|.+.
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 46778888899999999998776654
No 264
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=69.61 E-value=1.4e+02 Score=32.92 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=22.0
Q ss_pred hhHHHHHHHH-----HHhcCChHHHHHHHHhCCCCCC
Q 003868 555 EDHYARFIDL-----LCRAGKFSEAKDVIDSLPFKPS 586 (790)
Q Consensus 555 ~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~~p~ 586 (790)
..++..|.+. +...|++++|++.++++++-|.
T Consensus 533 ~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 533 KEICMLLLNISSIRELYFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 3455554443 3678899999999988866664
No 265
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=69.37 E-value=64 Score=28.94 Aligned_cols=124 Identities=10% Similarity=0.022 Sum_probs=58.6
Q ss_pred HHHHHHHHccCCCCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHH
Q 003868 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVI 289 (790)
Q Consensus 210 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll 289 (790)
...-..+++.+..+|...-...+..+.+.|..+....+.+.+. .+|...-...+
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~--------------------------~~~~~vr~~a~ 66 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALK--------------------------DEDAWVRRAAA 66 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTT--------------------------CSSHHHHHHHH
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHc--------------------------CCCHHHHHHHH
Confidence 3334444455555555555555555655555333333333221 23444444455
Q ss_pred HHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCC
Q 003868 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367 (790)
Q Consensus 290 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 367 (790)
.++...++.+....+. .++. .++..+-...+.++.+.|+.+....+...+.+++...-...+.++.+.+.
T Consensus 67 ~~L~~~~~~~~~~~L~-~~l~-------d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 67 DALGQIGDERAVEPLI-KALK-------DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp HHHHHHCCGGGHHHHH-HHTT-------CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHhhCCHHHHHHHH-HHHc-------CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 5555555443322222 2221 23455555566666666655444444444445555554555555555554
No 266
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=69.31 E-value=18 Score=37.19 Aligned_cols=67 Identities=18% Similarity=0.200 Sum_probs=42.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHccc----CCCCCCChhH
Q 003868 489 AMIAALGQHGNGARAIELYEQMLKEGILP-DRITFLTVLSACNHAGLVKEGRRYFETMHG----PYGIPPGEDH 557 (790)
Q Consensus 489 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 557 (790)
.++..+...|++++|+..+..+... .| +...+..++.++...|+..+|.+.|+.+.+ +.|+.|...+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455666677777777777776653 33 445677777777777777777777666533 2466666554
No 267
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=69.25 E-value=1e+02 Score=31.38 Aligned_cols=287 Identities=9% Similarity=-0.003 Sum_probs=137.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHhhCCC--------CChhHHHHHHHHHHHcC-CHHHHHHHHHHhc----cCChhH-----
Q 003868 324 NNALVTLYWKCGKVNEARDIFNQMPE--------RDLVSWNAILSAYVSAG-LIDEAKSLFEAMR----ERNLLS----- 385 (790)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~f~~m~~--------~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~----~~~~~~----- 385 (790)
...|...|.+.|+.++..+++..... +....-..+|..+.... ..+.-.++..+.. ..+-..
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777776666666543 12233445555554432 2222223322222 221111
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHHccCChHHHHHHHHHHHHh--CCCCchhHHHH
Q 003868 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY-----AFAGAITSCAGLGALENGRQLHAQLVHS--GYDSSLSAGNA 458 (790)
Q Consensus 386 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----t~~~ll~~~~~~g~~~~a~~i~~~~~~~--g~~~~~~~~~~ 458 (790)
=..++..|...|++.+|++++.++.+.=-+.|.. .+..-+..|...+++.+++..+...... .+.+++.+. +
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~-a 180 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ-G 180 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH-H
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH-H
Confidence 1256788888888999988888887642222211 2334455566777777777777666543 222222222 1
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHH-hcCChHHHHHHHHHHHHc---CCCCC---hhhHHHHHHHHHc
Q 003868 459 LITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALG-QHGNGARAIELYEQMLKE---GILPD---RITFLTVLSACNH 531 (790)
Q Consensus 459 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~---g~~p~---~~t~~~ll~a~~~ 531 (790)
.++.++ .-.+. ..+++.+|...|-+..+. -..|. ...|..+. +...
T Consensus 181 ~i~~~~--------------------------Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~-aLl~ 233 (394)
T 3txn_A 181 ALDLQS--------------------------GILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLC-KIML 233 (394)
T ss_dssp HHHHHH--------------------------HHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HHHT
T ss_pred HHHHHh--------------------------hHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-HHHc
Confidence 111111 11122 344444444444333210 00111 11232222 2221
Q ss_pred cCCHHHHHHHHH-HcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHH---HHHHHHHHHHhCCHHH
Q 003868 532 AGLVKEGRRYFE-TMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP--FKPSAPI---WEALLAGCRIHGNIDL 605 (790)
Q Consensus 532 ~g~~~~a~~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~---~~~ll~~~~~~g~~~~ 605 (790)
++..+-..++. .....+ ..|....+..++.+| +.+++.+-.++++... +..|... |..|....+.
T Consensus 234 -~~r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~------ 304 (394)
T 3txn_A 234 -GQSDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLE------ 304 (394)
T ss_dssp -TCGGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHH------
T ss_pred -CCHHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH------
Confidence 22122222221 111112 345666666666655 5667777777777652 4456543 2333322222
Q ss_pred HHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003868 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653 (790)
Q Consensus 606 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 653 (790)
..+.+++ .|-....+..++..+.- ..+++.....+|...|.-
T Consensus 305 --~~L~~i~--~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 305 --QNLCRII--EPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp --HHHHHHH--TTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTSS
T ss_pred --HHHHHHh--HhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCCe
Confidence 2333333 35455566666655532 578999999999877763
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=67.38 E-value=43 Score=26.23 Aligned_cols=78 Identities=14% Similarity=0.087 Sum_probs=47.2
Q ss_pred CChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 003868 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375 (790)
Q Consensus 296 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 375 (790)
..-++|..|-+.+.. .+. ...+--.-+..+...|++++|..+.+.+.-||.++|-++-. .+.|..+++..-+
T Consensus 20 H~HqEA~tIAdwL~~----~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLER----LGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHH----TTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh----CCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 355667777766665 332 22222222344667788888888888888888888877654 3566655555555
Q ss_pred HHhccC
Q 003868 376 EAMRER 381 (790)
Q Consensus 376 ~~m~~~ 381 (790)
..+...
T Consensus 92 ~~la~s 97 (115)
T 2uwj_G 92 AGLGGS 97 (115)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 444433
No 269
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=67.22 E-value=73 Score=28.81 Aligned_cols=48 Identities=13% Similarity=0.024 Sum_probs=23.2
Q ss_pred ChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCC
Q 003868 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367 (790)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 367 (790)
+..+-...+.++.+.|+.+....+...+.+++...-...+.++.+.|.
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 444555555555555554433344444444454444444455555444
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=66.72 E-value=24 Score=29.43 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=41.9
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhH
Q 003868 576 DVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628 (790)
Q Consensus 576 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 628 (790)
.-+-.+.+-|++.+..+-+.+|++.+|+..|.++++-+...-.+...+|-.++
T Consensus 77 N~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 77 NTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 33334567899999999999999999999999999998876544456676664
No 271
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=66.28 E-value=46 Score=26.13 Aligned_cols=78 Identities=15% Similarity=0.128 Sum_probs=47.1
Q ss_pred CChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 003868 296 GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLF 375 (790)
Q Consensus 296 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 375 (790)
..-++|..|-+.+.. .+. ...+--.-+..+...|++++|..+.+.+.-||.++|-++-. .+.|..+++..-+
T Consensus 21 H~HqEA~tIAdwL~~----~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHL----KGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHH----TTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh----CCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 355667777766665 332 22222222344567788888888888888888888877654 3556655555555
Q ss_pred HHhccC
Q 003868 376 EAMRER 381 (790)
Q Consensus 376 ~~m~~~ 381 (790)
..+...
T Consensus 93 ~~la~s 98 (116)
T 2p58_C 93 NRLARS 98 (116)
T ss_dssp HHHTTC
T ss_pred HHHHhC
Confidence 444443
No 272
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=65.05 E-value=51 Score=31.40 Aligned_cols=121 Identities=12% Similarity=0.046 Sum_probs=66.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCCh----hHHHHHHHHHHh
Q 003868 493 ALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE----DHYARFIDLLCR 567 (790)
Q Consensus 493 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~ 567 (790)
...+.|..++|++....-++. .|.. ..-..++.-+|-.|++++|.+-++...+ ..|+. ..|..+|.+-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~aE-- 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAA-- 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHH--
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHHH--
Confidence 345667777777777776663 4544 3444556667777777777777666553 23432 2333333221
Q ss_pred cCChHHHH-HHHHhC--C-CCCCHHHHH-HHHHHH--HHhCCHHHHHHHHHHHHhcCCCCCcchH
Q 003868 568 AGKFSEAK-DVIDSL--P-FKPSAPIWE-ALLAGC--RIHGNIDLGIQAAEQLFQLMPHHAGTYV 625 (790)
Q Consensus 568 ~g~~~~A~-~~~~~~--~-~~p~~~~~~-~ll~~~--~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 625 (790)
.+. ++|..- | +--.+.-|. .|+.+. ...|+.+.|..+-.++++.-|..++...
T Consensus 79 -----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~ 138 (273)
T 1zbp_A 79 -----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 138 (273)
T ss_dssp -----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred -----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC
Confidence 111 233221 1 111122243 444444 3458888888888888888777655443
No 273
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=65.01 E-value=78 Score=28.33 Aligned_cols=59 Identities=17% Similarity=0.154 Sum_probs=25.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003868 452 SLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQML 511 (790)
Q Consensus 452 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 511 (790)
+..+-...+.+..+.|+.+....+.+.+..++...-...+.++...|. .++...+.++.
T Consensus 120 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp SHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 444444444444444443333333333334444444444444444443 23444444444
No 274
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=61.78 E-value=13 Score=35.49 Aligned_cols=57 Identities=16% Similarity=0.238 Sum_probs=38.4
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 003868 564 LLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 620 (790)
.+.+.|.+++|++....- ...| |...-..|+..++..|++++|.+-++.+.+++|+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 455677777777665443 3334 55556667777777788887777777777777765
No 275
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=57.13 E-value=97 Score=31.94 Aligned_cols=71 Identities=7% Similarity=0.141 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCCCCcch--HHHHHHHHHhcCChhHHHHHhhhCCCC---ChHHHHHHHHHHhcCCChHHHHHHHhh
Q 003868 35 RSVHAHMISSGFKPREHI--INRLIDIYCKSLKLVYARTLFDEIPQP---DIVARTTLIAAYSASDNVKLAREMFNK 106 (790)
Q Consensus 35 ~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~ 106 (790)
..+...+.+.|..++... ..+.|...+..|+.+-+.-+++.-... +..-+ +.+...++.|+.+-+.-+++.
T Consensus 27 ~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~ 102 (437)
T 1n11_A 27 LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIGHTNMVKLLLEN 102 (437)
T ss_dssp HHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHCCCHHHHHHHHhC
Confidence 344455555665554321 123344455566666666666554332 11112 223333455666655555554
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.17 E-value=42 Score=34.92 Aligned_cols=93 Identities=5% Similarity=-0.035 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCCc----ch
Q 003868 556 DHYARFIDLLCRAGKFSEAKDVIDSL-----PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM--PHHAG----TY 624 (790)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~----~~ 624 (790)
.....+.+.|.+.|++++|.+.+.++ +...-...+..++..+...+|+..+...++++.... ..++. ..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 34556667777777777777777665 122233456666677777777777777777765441 11211 11
Q ss_pred HhhHHHHHhcCChhHHHHHHHHHH
Q 003868 625 VLLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 625 ~~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
..-+..+...++|.+|.+.|-...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHh
Confidence 222334455677777776665543
No 277
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=55.89 E-value=1.2e+02 Score=31.26 Aligned_cols=17 Identities=6% Similarity=0.268 Sum_probs=9.1
Q ss_pred HHhcCCChHHHHHHHhh
Q 003868 90 AYSASDNVKLAREMFNK 106 (790)
Q Consensus 90 ~~~~~g~~~~A~~~~~~ 106 (790)
.-+..|+++-+..+++.
T Consensus 20 ~Aa~~g~~~~v~~Ll~~ 36 (437)
T 1n11_A 20 VASFMGHLPIVKNLLQR 36 (437)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHc
Confidence 33445566655555554
No 278
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=53.98 E-value=86 Score=30.13 Aligned_cols=147 Identities=5% Similarity=-0.007 Sum_probs=73.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChh---hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCCh---hHHHHHHHHHHhc
Q 003868 495 GQHGNGARAIELYEQMLKEGILPDRI---TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE---DHYARFIDLLCRA 568 (790)
Q Consensus 495 ~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~ 568 (790)
+..|+.+ +++.+.+.|..|+.. ..+.| ...+..|..+-+..+++. |..++. .-+...+...+..
T Consensus 70 ~~~g~~~----~v~~Ll~~ga~~~~~d~~g~t~L-~~A~~~g~~~~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~ 139 (285)
T 3kea_A 70 ATLEDTK----IVKILLFSGLDDSQFDDKGNTAL-YYAVDSGNMQTVKLFVKK-----NWRLMFYGKTGWKTSFYHAVML 139 (285)
T ss_dssp TTSSSCH----HHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHH-----CGGGGGCSSSGGGSHHHHHHHT
T ss_pred HHcCCHH----HHHHHHHCCCCCCCcCCCCCcHH-HHHHHcCCHHHHHHHHhc-----CCCCCccCCCCCCCHHHHHHHc
Confidence 4455554 333444556655432 22233 333455666666655554 222221 1112334445567
Q ss_pred CChHHHHHHHHhCCCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHH
Q 003868 569 GKFSEAKDVIDSLPFKPSA-PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647 (790)
Q Consensus 569 g~~~~A~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 647 (790)
|+.+-+.-+++.-....+. .-+. .+......|+.+.+..+++.-...+..+..-....+..-+..|.. ++.+.+
T Consensus 140 ~~~~~v~~Ll~~g~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~L 214 (285)
T 3kea_A 140 NDVSIVSYFLSEIPSTFDLAILLS-CIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI----EMLQAL 214 (285)
T ss_dssp TCHHHHHHHHTTSCTTCCCSTHHH-HHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHH
T ss_pred CCHHHHHHHHhCCCccccccCCcc-HHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH----HHHHHH
Confidence 7777666666554322222 2233 344445778888887777776665544433333323333445553 455556
Q ss_pred HhCCCccCC
Q 003868 648 RDRGVKKEP 656 (790)
Q Consensus 648 ~~~g~~~~~ 656 (790)
.+.|..++.
T Consensus 215 l~~gad~~~ 223 (285)
T 3kea_A 215 FKYDINIYS 223 (285)
T ss_dssp TTSCBCSTT
T ss_pred HHcCCCCCC
Confidence 677776543
No 279
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=48.68 E-value=1.8e+02 Score=27.35 Aligned_cols=144 Identities=10% Similarity=0.089 Sum_probs=75.6
Q ss_pred HHHHHHHhcCCChHHHHHHHhhCCCC-CC-CcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChh---hHHHHHHHH
Q 003868 85 TTLIAAYSASDNVKLAREMFNKTPLK-MR-DTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF---TFTSVLSAL 159 (790)
Q Consensus 85 ~~li~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~ 159 (790)
++.+...++.|+++....+++.-... .. +..-+ +.+...+..|+.+ +++.+.+.|..|+.. -.+.+..++
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCC-cHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 45666778899999998888865442 11 22222 3444455666654 455555667655432 223333333
Q ss_pred hcchhhhhhhhhHHHHHHHhCCCCchh---HHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCCCCee----------
Q 003868 160 ALIVEEEKQCMQMHCTVVKSGTGLFTS---VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDEL---------- 226 (790)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~~~~---------- 226 (790)
. .+. . .+...+++.|..++.. -.+.|. ..++. |+.+-+..+++.-..++..
T Consensus 81 ~-~~~---~--~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~---------~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~ 144 (285)
T 1wdy_A 81 I-AGS---V--KLLKLFLSKGADVNECDFYGFTAFM-EAAVY---------GKVKALKFLYKRGANVNLRRKTKEDQERL 144 (285)
T ss_dssp H-HTC---H--HHHHHHHHTTCCTTCBCTTCCBHHH-HHHHT---------TCHHHHHHHHHTTCCTTCCCCCCHHHHHT
T ss_pred H-cCC---H--HHHHHHHHcCCCCCccCcccCCHHH-HHHHh---------CCHHHHHHHHHhCCCcccccccHHHHHhh
Confidence 2 222 1 5556666777655432 223333 33444 7888777777765443221
Q ss_pred ---eHHHHHHHHHhCCChhHHHHHHHh
Q 003868 227 ---SWTTMMTGYVKNDYLDAAREFLDG 250 (790)
Q Consensus 227 ---~~~~li~~~~~~g~~~~A~~l~~~ 250 (790)
.+ +.+...+..|+.+-+..+++.
T Consensus 145 ~~~g~-t~L~~A~~~~~~~~v~~Ll~~ 170 (285)
T 1wdy_A 145 RKGGA-TALMDAAEKGHVEVLKILLDE 170 (285)
T ss_dssp TCCCC-CHHHHHHHHTCHHHHHHHHHT
T ss_pred ccCCC-cHHHHHHHcCCHHHHHHHHHh
Confidence 12 233444556666655555543
No 280
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=47.44 E-value=1.2e+02 Score=27.32 Aligned_cols=79 Identities=13% Similarity=0.149 Sum_probs=52.6
Q ss_pred HHHHHhC-CCCCCHH---HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCCCcchHhhHHHHHhcCChhHHHHHHHHHH
Q 003868 575 KDVIDSL-PFKPSAP---IWEALLAGCRIHGNIDLGIQAAEQLFQL--MPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 575 ~~~~~~~-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
...|... ..+.|.. +|-.++..| ..++...+..+|..+... .-.-+..|...+..+...|++.+|.++++.-.
T Consensus 64 ~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI 142 (202)
T 3esl_A 64 LIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGA 142 (202)
T ss_dssp HHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444333 2344553 455555544 234466778888887754 45566788888999999999999999999887
Q ss_pred hCCCcc
Q 003868 649 DRGVKK 654 (790)
Q Consensus 649 ~~g~~~ 654 (790)
+++-.|
T Consensus 143 ~~~A~P 148 (202)
T 3esl_A 143 ENNCRP 148 (202)
T ss_dssp HTTCBS
T ss_pred HcCCcc
Confidence 766654
No 281
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=47.17 E-value=90 Score=26.82 Aligned_cols=68 Identities=18% Similarity=0.307 Sum_probs=31.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHHcCC--HHHHHHHHHHhccCChhHHHHHHHH
Q 003868 325 NALVTLYWKCGKVNEARDIFNQMPERD---LVSWNAILSAYVSAGL--IDEAKSLFEAMRERNLLSWTVMISG 392 (790)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~li~~ 392 (790)
+.++.-|...|+.++|.+.++++..|. .++...+..++-+.+. .+.+..++..+...+..+-..+..+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~G 85 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 85 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 445555666666666666666665442 1223333333333222 2334444444444444444444444
No 282
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=46.75 E-value=1.2e+02 Score=25.04 Aligned_cols=68 Identities=18% Similarity=0.307 Sum_probs=30.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHHcCC--HHHHHHHHHHhccCChhHHHHHHHH
Q 003868 325 NALVTLYWKCGKVNEARDIFNQMPERD---LVSWNAILSAYVSAGL--IDEAKSLFEAMRERNLLSWTVMISG 392 (790)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~li~~ 392 (790)
+.++.-|...|+.++|.+.++++..|. ......+..++-+.+. .+.+..++..+...+..+-..+..|
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~G 83 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 83 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 345555656666666666666655431 1222333333333221 2334444444444444444444444
No 283
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=46.49 E-value=76 Score=29.17 Aligned_cols=195 Identities=7% Similarity=-0.007 Sum_probs=105.6
Q ss_pred HHHHHHHHHcCCCCCcch--HHHHHHHHHhcCChhHHHHHhhhCCC---CChHHHHHHHHHHhcCCChHHHHHHHhhCCC
Q 003868 35 RSVHAHMISSGFKPREHI--INRLIDIYCKSLKLVYARTLFDEIPQ---PDIVARTTLIAAYSASDNVKLAREMFNKTPL 109 (790)
Q Consensus 35 ~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 109 (790)
..+...+.+.|..++... -.+.+...+..|+.+.+..+++.-.. .+..-. +.+...+..|+.+-+..+++.-+.
T Consensus 24 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~~~~ 102 (237)
T 3b7b_A 24 VDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGS-TCLHLAAKKGHYEVVQYLLSNGQM 102 (237)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSC-CHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred HHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCC-cHHHHHHHcCCHHHHHHHHhCCCC
Confidence 446667777777665422 12345556678899888888876443 222223 334455677888888888876422
Q ss_pred C--CCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChh---hHHHHHHHHhcchhhhhhhhhHHHHHHHhCCCCc
Q 003868 110 K--MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNF---TFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLF 184 (790)
Q Consensus 110 ~--~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 184 (790)
. .++..-++.+. ..++.|+. ++++.+.+.|..++.. -.+.+..++ ..+. . .+...+++.|..++
T Consensus 103 ~~~~~~~~g~t~L~-~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~---~--~~~~~Ll~~g~~~~ 171 (237)
T 3b7b_A 103 DVNCQDDGGWTPMI-WATEYKHV----DLVKLLLSKGSDINIRDNEENICLHWAA-FSGC---V--DIAEILLAAKCDLH 171 (237)
T ss_dssp CTTCCCTTSCCHHH-HHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHH-HHCC---H--HHHHHHHTTTCCTT
T ss_pred CcccCCCCCCCHHH-HHHHcCCH----HHHHHHHHCCCCCCccCCCCCCHHHHHH-HCCC---H--HHHHHHHHcCCCCC
Confidence 1 23333333333 33455554 3455555666655432 122232222 2222 1 55566677776554
Q ss_pred hhH--HHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCCC---CeeeHHHHHHHHHhCCChhHHHHHHHhc
Q 003868 185 TSV--LNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER---DELSWTTMMTGYVKNDYLDAAREFLDGM 251 (790)
Q Consensus 185 ~~~--~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m 251 (790)
..- ..+.+...++. |..+-+.-+++.-..+ |..-. +-+...+..|+...++++.+.+
T Consensus 172 ~~~~~g~t~L~~A~~~---------~~~~~v~~Ll~~gad~~~~d~~g~-t~l~~A~~~~~~~~~~~l~~~l 233 (237)
T 3b7b_A 172 AVNIHGDSPLHIAARE---------NRYDCVVLFLSRDSDVTLKNKEGE-TPLQCASLNSQVWSALQMSKAL 233 (237)
T ss_dssp CCCTTCCCHHHHHHHT---------TCHHHHHHHHTTTCCTTCCCTTSC-CHHHHSCTTCHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHh---------CCHhHHHHHHHcCCCCCccCCCCC-CHHHHHHHHHHHHHHHHHHHHh
Confidence 321 22333444455 8888787777654433 22222 2344456778888888887766
No 284
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=45.76 E-value=1.6e+02 Score=26.63 Aligned_cols=197 Identities=6% Similarity=-0.027 Sum_probs=106.1
Q ss_pred HHHHHHHHHcCCCCCcch--HHHHHHHHHhcCChhHHHHHhhhCCCCChHH---HHHHHHHHhcCCChHHHHHHHhhCCC
Q 003868 35 RSVHAHMISSGFKPREHI--INRLIDIYCKSLKLVYARTLFDEIPQPDIVA---RTTLIAAYSASDNVKLAREMFNKTPL 109 (790)
Q Consensus 35 ~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~ 109 (790)
..+...+.+.|..++... -.+.|...++.|+.+.+.-+++.-..++... ..+.+...+..|+.+-...+++.-..
T Consensus 22 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~ 101 (240)
T 3eu9_A 22 YERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD 101 (240)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred hHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCC
Confidence 455666777776664432 2245666778899998888888766432111 22344555667888877777765333
Q ss_pred C-CCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCh---hhHHHHHHHHhcchhhhhhhhhHHHHHHHhCCCCch
Q 003868 110 K-MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN---FTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFT 185 (790)
Q Consensus 110 ~-~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 185 (790)
. .++...++.+. ..+..|+.+ +++.+.+.|..++. .-.+.+..++...... .+...+.+.|..++.
T Consensus 102 ~~~~~~~g~t~l~-~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~-----~~~~~L~~~~~~~~~ 171 (240)
T 3eu9_A 102 PSLIDGEGCSCIH-LAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV-----DPTRLLLTFNVSVNL 171 (240)
T ss_dssp TTCCCTTSCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSS-----TTHHHHHHTTCCTTC
T ss_pred CcccCCCCCCHHH-HHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHHhCChH-----HHHHHHHhcCCCcch
Confidence 1 12333333333 344556654 44555556655543 2233444443222211 344556666765543
Q ss_pred hH---HHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCCCCee---eHHHHHHHHHhCCChhHHHHHHHhc
Q 003868 186 SV---LNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDEL---SWTTMMTGYVKNDYLDAAREFLDGM 251 (790)
Q Consensus 186 ~~---~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m 251 (790)
.. ..+.+...++. |..+-+..+++.-..++.. -+ +-+...++.|+.+-+.-+++..
T Consensus 172 ~~~~~g~t~L~~A~~~---------~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 172 GDKYHKNTALHWAVLA---------GNTTVISLLLEAGANVDAQNIKGE-SALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp CCTTTCCCHHHHHHHH---------TCHHHHHHHHHHTCCTTCBCTTSC-BHHHHHHHTTCHHHHHHHHHHC
T ss_pred hhccCCCcHHHHHHHc---------CCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHHHhh
Confidence 22 22333444455 8888888887765443222 12 2344556777777666666654
No 285
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=45.56 E-value=1.1e+02 Score=30.36 Aligned_cols=70 Identities=16% Similarity=0.182 Sum_probs=41.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHhhCCCCCh---hHHHHHHHHHHHc-CCHHHHHHHHHHhccCChhHHHHHHHHH
Q 003868 324 NNALVTLYWKCGKVNEARDIFNQMPERDL---VSWNAILSAYVSA-GLIDEAKSLFEAMRERNLLSWTVMISGL 393 (790)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~li~~~ 393 (790)
...++.-|...|+.++|.+.++++..|.- .....+..++-+. ...+.+..++..+.+.+..+-..+..||
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf 87 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGL 87 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 35577778888888888888888876532 1222222222221 1234455666666666776666666663
No 286
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.36 E-value=1.6e+02 Score=30.46 Aligned_cols=62 Identities=8% Similarity=-0.082 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 003868 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC--DYAFAGAITSCAGLGALENGRQLHAQLVH 446 (790)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~i~~~~~~ 446 (790)
++..+...|.+.|++++|.+.|.++...-..+. ...+..++..+...+++..+......+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 566777888888888888888888876532222 33455666667777777777776666543
No 287
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=42.58 E-value=4.5e+02 Score=30.30 Aligned_cols=164 Identities=13% Similarity=0.145 Sum_probs=92.0
Q ss_pred HHHHcCCHHHHHHHHHHhccC-C--hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHccCCh
Q 003868 361 AYVSAGLIDEAKSLFEAMRER-N--LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA---GAITSCAGLGAL 434 (790)
Q Consensus 361 ~~~~~g~~~~A~~~~~~m~~~-~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~---~ll~~~~~~g~~ 434 (790)
.++..|+.+....++..+.+. + +.-...+.-++...|+.+.+..+.+.+.... .| ..-|. .+.-+|+..|+.
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCH
T ss_pred hhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCH
Confidence 345667777777777765543 2 2223344455667888888888888877631 22 22233 233457788888
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CCHhH--HHHHHHHHHhcCCh-HHHHHHHHHH
Q 003868 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN-VDSVS--WNAMIAALGQHGNG-ARAIELYEQM 510 (790)
Q Consensus 435 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~--~~~li~~~~~~g~~-~~A~~~~~~m 510 (790)
....+++..+.... ..++.-...+.-+....|+.+.+.++++.+.+ .|... -.++.-|....|.. .+|++++..+
T Consensus 577 ~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 577 SAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 87777888877642 22222222222233346777767777765442 33333 33334444445544 5788888888
Q ss_pred HHcCCCCChhhHHHHHHHHH
Q 003868 511 LKEGILPDRITFLTVLSACN 530 (790)
Q Consensus 511 ~~~g~~p~~~t~~~ll~a~~ 530 (790)
.. .+|..+-...+.+..
T Consensus 656 ~~---D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 656 TK---DPVDFVRQAAMIALS 672 (963)
T ss_dssp HT---CSSHHHHHHHHHHHH
T ss_pred cc---CCCHHHHHHHHHHHH
Confidence 64 455544433444443
No 288
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=41.91 E-value=70 Score=30.82 Aligned_cols=52 Identities=6% Similarity=0.025 Sum_probs=31.2
Q ss_pred HHHHHHhcCChhHHHHHhhhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhC
Q 003868 56 LIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKT 107 (790)
Q Consensus 56 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 107 (790)
.|...+..|+.+.+..+++.-..++..-..+.+...+..|+.+-+..+++.-
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 85 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSG 85 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 4555566788877777777644333222234455556677777777777653
No 289
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=41.52 E-value=1.3e+02 Score=33.22 Aligned_cols=16 Identities=13% Similarity=0.291 Sum_probs=13.9
Q ss_pred HhcCChhHHHHHHHHH
Q 003868 632 ANLGRWDDAARVRKLM 647 (790)
Q Consensus 632 ~~~g~~~~a~~~~~~m 647 (790)
.+.|+|++|.+.++++
T Consensus 549 ~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 549 YFNKQWQETLSQMELL 564 (661)
T ss_dssp HHTTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhC
Confidence 6889999999888875
No 290
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=40.80 E-value=1e+02 Score=30.15 Aligned_cols=61 Identities=10% Similarity=0.133 Sum_probs=44.6
Q ss_pred HHhCCCCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCC
Q 003868 578 IDSLPFKPSA--PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652 (790)
Q Consensus 578 ~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 652 (790)
|...+++|.- -+..+-++.+.+++++..|-.+.++++++.|+.. ..++|.++.....+.+.
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~~ 258 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMAS 258 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSCC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCCC
Confidence 4444566543 3566777888999999999999999999998531 34668888887765443
No 291
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=39.63 E-value=1e+02 Score=26.55 Aligned_cols=71 Identities=7% Similarity=0.012 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCCCCcch--HHHHHHHHHhcCChhHHHHHhhhCCCC---ChHHHHHHHHHHhcCCChHHHHHHHhh
Q 003868 35 RSVHAHMISSGFKPREHI--INRLIDIYCKSLKLVYARTLFDEIPQP---DIVARTTLIAAYSASDNVKLAREMFNK 106 (790)
Q Consensus 35 ~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~ 106 (790)
.++...+.+.|..++... -.+.|...+..|+.+.+..+++.-..+ |..-++ .+...+..|+.+-+.-+++.
T Consensus 27 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~ 102 (169)
T 2y1l_E 27 DDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMT-PLRLAALFGHLEIVEVLLKN 102 (169)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCC-HHHHHHHcCCHHHHHHHHHc
Confidence 445555666666554321 123344455667777666666653332 222222 23333445555555555543
No 292
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=35.34 E-value=3.5e+02 Score=27.00 Aligned_cols=63 Identities=14% Similarity=0.256 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCC---HhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCC
Q 003868 456 GNALITMYARCGVVEAANCVFNTMPNVD---SVSWNAMIAALGQHGN--GARAIELYEQMLKEGILPD 518 (790)
Q Consensus 456 ~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 518 (790)
.+.++.-|...|+.++|.+.++++..|. .....++..++-+.++ .+...+++..+...|+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 4566666777777777777777766542 2233334444433322 2345566666665554433
No 293
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=34.86 E-value=1.2e+02 Score=25.21 Aligned_cols=64 Identities=14% Similarity=0.250 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCC---HhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCh
Q 003868 456 GNALITMYARCGVVEAANCVFNTMPNVD---SVSWNAMIAALGQHGN--GARAIELYEQMLKEGILPDR 519 (790)
Q Consensus 456 ~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 519 (790)
.+.++.-|...|+.++|.+.++++..|. .....++..++-+.+. .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3567777888888888888888887552 2334444455554432 35677777777776654433
No 294
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=34.04 E-value=12 Score=23.51 Aligned_cols=18 Identities=33% Similarity=0.717 Sum_probs=13.3
Q ss_pred cCCccccc-CCCccCCCCC
Q 003868 772 DGKRFHHF-RDGKCSCGDY 789 (790)
Q Consensus 772 ~~~~~h~~-~~g~~sc~~~ 789 (790)
.|-.-|.. .+|.||||-|
T Consensus 11 ~CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 11 ACPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCTTSCCCTTSSBTTTTB
T ss_pred CCCCCceecCCceeccccc
Confidence 45556666 5899999976
No 295
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=33.42 E-value=1.5e+02 Score=29.52 Aligned_cols=86 Identities=9% Similarity=0.002 Sum_probs=40.7
Q ss_pred HHHHHhcCChhHHHHHhhhCCC---CChHHHHHHHHHHhcCCChHHHHHHHhhCCCCCCCcchHHHHHHHHHhCCCchHH
Q 003868 57 IDIYCKSLKLVYARTLFDEIPQ---PDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAA 133 (790)
Q Consensus 57 l~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A 133 (790)
|...+..|+.+....+++.-.. .|..-++ .+...+..|+.+-+..+++.-.. .+...-.+.+..-+..|+.+-+
T Consensus 24 L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~g~t~L~~A~~~g~~~~v 100 (364)
T 3ljn_A 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCT-ALHLACKFGCVDTAKYLASVGEV--HSLWHGQKPIHLAVMANKTDLV 100 (364)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHHCCHHHHHHHHHHCCC--CCCBTTBCHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccCCCCCc-HHHHHHHcCCHHHHHHHHHCCCC--ccccCCCCHHHHHHHcCCHHHH
Confidence 4444456666666666655332 2222222 23344455666666666665443 2221112233334455666555
Q ss_pred HHHHHHhhhCCC
Q 003868 134 IELFRDMRRDDV 145 (790)
Q Consensus 134 ~~~~~~m~~~g~ 145 (790)
..+++.-...|.
T Consensus 101 ~~Ll~~~~~~~~ 112 (364)
T 3ljn_A 101 VALVEGAKERGQ 112 (364)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHhccccCC
Confidence 555554333333
No 296
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=32.53 E-value=18 Score=22.88 Aligned_cols=13 Identities=23% Similarity=0.833 Sum_probs=10.4
Q ss_pred cccccCCcchhhH
Q 003868 746 NLRICGDCHNAFK 758 (790)
Q Consensus 746 nl~~c~~~~~~~~ 758 (790)
+-|+|.+|+.-+-
T Consensus 16 ~YRvC~~CgkPi~ 28 (44)
T 2lo3_A 16 QYRVCEKCGKPLA 28 (44)
T ss_dssp CEEECTTTCCEEE
T ss_pred cchhhcccCCcch
Confidence 7899999996543
No 297
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=32.48 E-value=2.1e+02 Score=25.89 Aligned_cols=63 Identities=14% Similarity=0.201 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCh-----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003868 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNL-----LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417 (790)
Q Consensus 354 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 417 (790)
.|-..+..+ ..+...++..+|..|...++ ..|-.....+...|++.+|.++|+.-++.+-+|-
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 344444333 23446677788887776543 4677777888888888888888888887777773
No 298
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=31.82 E-value=77 Score=23.42 Aligned_cols=41 Identities=5% Similarity=0.111 Sum_probs=31.2
Q ss_pred HHHHhhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhh
Q 003868 101 REMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMR 141 (790)
Q Consensus 101 ~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~ 141 (790)
..+++++|..+|++.||+-+...+-+..-..+++.+.+++-
T Consensus 23 ~~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy 63 (81)
T 2ko4_A 23 KQLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEVY 63 (81)
T ss_dssp HHHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 46788888888999999988877666666677777666654
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=31.70 E-value=1.6e+02 Score=25.17 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCh---hHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHH
Q 003868 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNL---LSWTVMISGLAQNGY--GEEGLKLFSQMRLEGFKPCDY 419 (790)
Q Consensus 354 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 419 (790)
..+.++.-|...|+.++|.+.++++..|.- +....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 456788999999999999999999976632 345555566665432 356777888887777554433
No 300
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=31.19 E-value=34 Score=26.05 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=33.1
Q ss_pred cchHHHHHHHHHHHHHHHHcCcccCCccccccCChhhhhhhhhhhhHHHHHHHh
Q 003868 678 PEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFG 731 (790)
Q Consensus 678 ~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~h~~~~a~~~~ 731 (790)
.+..+|+..+++...+++..||.||...+-. ....+.++.+-..||
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~G~--------eayef~~e~v~~e~g 58 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILFGR--------EAYNFLSNLLKKEME 58 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEECH--------HHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEEcH--------HHHHHHHHHHhHhhc
Confidence 4566788899999999999999999877532 122344555556666
No 301
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=31.02 E-value=2.2e+02 Score=24.39 Aligned_cols=49 Identities=14% Similarity=0.046 Sum_probs=35.5
Q ss_pred HHHHHHHHHhc--CCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 003868 606 GIQAAEQLFQL--MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKK 654 (790)
Q Consensus 606 a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 654 (790)
+..+|+.+... .-.-+..|...+..+...|++.+|.++++.-.+++-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 56677776654 34456677888888888888888888888877665544
No 302
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=30.94 E-value=1.9e+02 Score=25.95 Aligned_cols=35 Identities=23% Similarity=0.204 Sum_probs=18.4
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhH
Q 003868 594 LAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628 (790)
Q Consensus 594 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 628 (790)
+..|.+.|.+++|.+++++.++..+.+...-.-|.
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~ 158 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLL 158 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 34577777777777777777766655543333333
No 303
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.86 E-value=2.7e+02 Score=25.07 Aligned_cols=44 Identities=16% Similarity=0.235 Sum_probs=34.0
Q ss_pred HHHHHH---hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC
Q 003868 490 MIAALG---QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534 (790)
Q Consensus 490 li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 534 (790)
+|+++. +-.+++.|+-.+-+|++.| .|..+.-..++.+....|.
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 455554 3578999999999999999 7777777777777776664
No 304
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=29.95 E-value=3.1e+02 Score=24.75 Aligned_cols=82 Identities=7% Similarity=-0.045 Sum_probs=46.7
Q ss_pred CCCCCCCchHHHHHHHHHHHcCCCCCcch--HHHHHHHHHhcCChhHHHHHhhhCCCCC---hHHHHHHHHHHhcCCChH
Q 003868 24 DPRNPITSSLARSVHAHMISSGFKPREHI--INRLIDIYCKSLKLVYARTLFDEIPQPD---IVARTTLIAAYSASDNVK 98 (790)
Q Consensus 24 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~ 98 (790)
+..|+ .+....+++.+.+.|..++... -.+.|...+..|+.+-...+++.-..++ ..-+ +.+...+..|+.+
T Consensus 17 ~~~g~--~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~ 93 (241)
T 1k1a_A 17 VVQGN--LPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ-TAAHLACEHRSPT 93 (241)
T ss_dssp HHTTC--HHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHH
T ss_pred HHcCC--HHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC-CHHHHHHHcCCHH
Confidence 34466 6666666666666666655331 1234555566777777777776544322 2222 2334445677777
Q ss_pred HHHHHHhhCC
Q 003868 99 LAREMFNKTP 108 (790)
Q Consensus 99 ~A~~~~~~~~ 108 (790)
-...+++...
T Consensus 94 ~~~~Ll~~~~ 103 (241)
T 1k1a_A 94 CLRALLDSAA 103 (241)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHcCC
Confidence 7777776654
No 305
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=29.91 E-value=2.9e+02 Score=24.95 Aligned_cols=51 Identities=6% Similarity=0.031 Sum_probs=30.8
Q ss_pred HHHHHHhcCChhHHHHHhhhCCCC---ChHHHHHHHHHHhcCCChHHHHHHHhhC
Q 003868 56 LIDIYCKSLKLVYARTLFDEIPQP---DIVARTTLIAAYSASDNVKLAREMFNKT 107 (790)
Q Consensus 56 ll~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~ 107 (790)
.|...+..|+.+....+++.-..+ +..-++ .+...+..|+.+-+..+++.-
T Consensus 14 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g 67 (237)
T 3b7b_A 14 PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRT-PLMEAAENNHLEAVKYLIKAG 67 (237)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHTTT
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCC-HHHHHHHhCCHHHHHHHHhCC
Confidence 345556678888777777764432 222233 344456678888777777653
No 306
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.54 E-value=1.9e+02 Score=30.64 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=34.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCCh--hHH-HHHHHHHHhcCChHHHHHHHHhC
Q 003868 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE--DHY-ARFIDLLCRAGKFSEAKDVIDSL 581 (790)
Q Consensus 521 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~-~~li~~~~~~g~~~~A~~~~~~~ 581 (790)
.++.+++.|.+.+.++.|..+..+..--....++. ..| -.+...+.-.+++.+|.+.+...
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 46667777777777777777777664210001111 112 13445556677777777666553
No 307
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=29.23 E-value=2.7e+02 Score=24.17 Aligned_cols=49 Identities=10% Similarity=0.039 Sum_probs=36.4
Q ss_pred HHHHHHHHHhc--CCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 003868 606 GIQAAEQLFQL--MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKK 654 (790)
Q Consensus 606 a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 654 (790)
+..+|..+... .-.-+..|...+..+...|++.+|.++++.-.+++..|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 55667766654 44456778888888888899999999988887766554
No 308
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=28.87 E-value=3.7e+02 Score=25.23 Aligned_cols=12 Identities=17% Similarity=-0.222 Sum_probs=4.9
Q ss_pred HHHHHHHHHhcC
Q 003868 558 YARFIDLLCRAG 569 (790)
Q Consensus 558 ~~~li~~~~~~g 569 (790)
-...+.++++.|
T Consensus 209 R~~A~~aL~~~~ 220 (280)
T 1oyz_A 209 RIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC
Confidence 333344444444
No 309
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=27.96 E-value=2.2e+02 Score=26.50 Aligned_cols=22 Identities=14% Similarity=-0.004 Sum_probs=19.0
Q ss_pred HHHHHHhCCChhHHHHHHHhcc
Q 003868 231 MMTGYVKNDYLDAAREFLDGMS 252 (790)
Q Consensus 231 li~~~~~~g~~~~A~~l~~~m~ 252 (790)
-++.+....++++|.+++++..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 4778899999999999999763
No 310
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=27.34 E-value=3.9e+02 Score=25.03 Aligned_cols=18 Identities=0% Similarity=-0.123 Sum_probs=6.6
Q ss_pred CCHHHHHHHHHHHHccCC
Q 003868 416 PCDYAFAGAITSCAGLGA 433 (790)
Q Consensus 416 p~~~t~~~ll~~~~~~g~ 433 (790)
++...-...+.+....|+
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 344333344444444443
No 311
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=26.60 E-value=4.9e+02 Score=25.94 Aligned_cols=69 Identities=17% Similarity=0.289 Sum_probs=39.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHHcCC--HHHHHHHHHHhccCChhHHHHHHHH
Q 003868 324 NNALVTLYWKCGKVNEARDIFNQMPERD---LVSWNAILSAYVSAGL--IDEAKSLFEAMRERNLLSWTVMISG 392 (790)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~li~~ 392 (790)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.++ .+...+++..+...+..+-..+..+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~G 293 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 293 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 3456677777778888888777777653 2233444444443322 3445556666666666555555555
No 312
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=26.46 E-value=3.5e+02 Score=24.23 Aligned_cols=47 Identities=13% Similarity=0.041 Sum_probs=20.2
Q ss_pred HHhcCChhHHHHHhhhCCCCChH--HHHHHHHHHhcCCChHHHHHHHhh
Q 003868 60 YCKSLKLVYARTLFDEIPQPDIV--ARTTLIAAYSASDNVKLAREMFNK 106 (790)
Q Consensus 60 ~~~~~~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~ 106 (790)
.++.|+++....+++.-..++.. ...+.+...++.|+++-+..+++.
T Consensus 16 A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 16 ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 34555555555555543321111 111233334445555555555443
No 313
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=25.43 E-value=5.4e+02 Score=26.04 Aligned_cols=151 Identities=10% Similarity=0.032 Sum_probs=85.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC----CC-----HhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCChhhHHHH
Q 003868 457 NALITMYARCGVVEAANCVFNTMPN----VD-----SVSWNAMIAALGQHGNGARAIELYEQMLKE--GILPDRITFLTV 525 (790)
Q Consensus 457 ~~li~~y~~~g~~~~A~~~~~~~~~----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~l 525 (790)
.-|+..|...|++.+|.+++.++.+ .| ...+-.-+..|...|+..++...+.+.... .+.|++..- +.
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~-a~ 181 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ-GA 181 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH-HH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH-HH
Confidence 3567777888888887776665542 11 234555677888899999999998877542 233444322 22
Q ss_pred HH-----HHH-ccCCHHHHHHHHHHcccCCCCC--C---ChhHHHHHHHHHHhcCChHHHHHHHH-----hCCCCCCHHH
Q 003868 526 LS-----ACN-HAGLVKEGRRYFETMHGPYGIP--P---GEDHYARFIDLLCRAGKFSEAKDVID-----SLPFKPSAPI 589 (790)
Q Consensus 526 l~-----a~~-~~g~~~~a~~~~~~~~~~~~~~--p---~~~~~~~li~~~~~~g~~~~A~~~~~-----~~~~~p~~~~ 589 (790)
+. .+. ..+++.+|...|-+..+.|.-. | +...|..|..++. ++..+-..++. .. ..|+...
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~--~~r~el~~~l~~~~~~~~-~~pei~~ 258 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML--GQSDDVNQLVSGKLAITY-SGRDIDA 258 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHSHHHHTT-CSHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHc--CCHHHHHHHhcccccccc-CCccHHH
Confidence 22 345 7899999999888765433211 1 1234545544443 22223222221 11 2455544
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHH
Q 003868 590 WEALLAGCRIHGNIDLGIQAAEQ 612 (790)
Q Consensus 590 ~~~ll~~~~~~g~~~~a~~~~~~ 612 (790)
+..|+.++ ..+++.....+++.
T Consensus 259 l~~L~~a~-~~~dl~~f~~iL~~ 280 (394)
T 3txn_A 259 MKSVAEAS-HKRSLADFQAALKE 280 (394)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHHH-HhCCHHHHHHHHHH
Confidence 55555554 55677665555554
No 314
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=24.70 E-value=23 Score=29.70 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=25.8
Q ss_pred CCeEEEEe----cccccCCcchhhHhhhhhcCcEEEEecCCcccccCCCccC
Q 003868 738 GATVRVLK----NLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCS 785 (790)
Q Consensus 738 ~~~~~~~~----nl~~c~~~~~~~~~~s~~~~~~i~~~~~~~~h~~~~g~~s 785 (790)
...+||+. +.++|-+|- +...-..-.++-+||+|+++.|-
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~~--------i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINYS--------IVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEEE--------CCTTCEEEEEETTEEEEECSSCE
T ss_pred CcEEEEEEEeCCCCeEEEeeE--------EeCCcEEeccCCeeEEEEcCCEE
Confidence 45567764 466776662 22222344688899999999874
No 315
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=24.41 E-value=23 Score=25.37 Aligned_cols=22 Identities=32% Similarity=0.644 Sum_probs=17.8
Q ss_pred cEEEEecCCcccccCCCccCCC
Q 003868 766 REIVVRDGKRFHHFRDGKCSCG 787 (790)
Q Consensus 766 ~~i~~~~~~~~h~~~~g~~sc~ 787 (790)
..|=+.|....|+|+||+-+-.
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 3577889999999999986543
No 316
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.34 E-value=5.9e+02 Score=29.49 Aligned_cols=114 Identities=9% Similarity=-0.029 Sum_probs=60.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcC
Q 003868 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569 (790)
Q Consensus 490 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 569 (790)
++..+...|.++-|.++. . -+.-+...-..+..+|...|++++|..+|+++.. |+..+......
T Consensus 816 l~~~L~~~~~~~~a~eL~----~-~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~--gl~~~~~~~~~--------- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----G-WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFAV--------- 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----G-GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--TTCSSCCSCGG---------
T ss_pred HHHHHHHhcHHHHHHHHH----h-hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh--hcccCcccccc---------
Confidence 455566666666544432 1 1223333223355667777888888888877653 44332211000
Q ss_pred ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCC
Q 003868 570 KFSEAKDVIDSLPFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQL-MPHH 620 (790)
Q Consensus 570 ~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~p~~ 620 (790)
..+...++...+.+. ...-|..++..+.+++-++.+.+..+.+++. .+++
T Consensus 880 -~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd 931 (950)
T 4gq2_M 880 -LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDD 931 (950)
T ss_dssp -GHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCC
T ss_pred -hhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCC
Confidence 011112222221111 1235677788888889999999888888875 3444
No 317
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.43 E-value=1.2e+02 Score=23.51 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=15.6
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHHcCC
Q 003868 336 KVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367 (790)
Q Consensus 336 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 367 (790)
..+.|.++++.++.+...+|..++.++...|+
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~ 83 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQ 83 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCc
Confidence 34455555555555544555555555444344
No 318
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=23.16 E-value=3.7e+02 Score=23.34 Aligned_cols=13 Identities=0% Similarity=0.184 Sum_probs=6.9
Q ss_pred CCHHHHHHHHccC
Q 003868 208 SLMGAARRVFDEM 220 (790)
Q Consensus 208 g~~~~A~~~f~~~ 220 (790)
|..+-+..+++.-
T Consensus 117 ~~~~~v~~Ll~~g 129 (201)
T 3hra_A 117 GHIDNVKLLLEDG 129 (201)
T ss_dssp TCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHcC
Confidence 5555555555443
No 319
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=23.09 E-value=2.7e+02 Score=24.22 Aligned_cols=47 Identities=4% Similarity=0.070 Sum_probs=30.6
Q ss_pred HHHHHHHhccCCh-----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003868 371 AKSLFEAMRERNL-----LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC 417 (790)
Q Consensus 371 A~~~~~~m~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 417 (790)
+.++|..|...++ ..|......+...|++.+|.++|+.-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 5566666665543 3566666667777777777777777776666663
No 320
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.73 E-value=4.2e+02 Score=23.81 Aligned_cols=44 Identities=11% Similarity=0.185 Sum_probs=31.8
Q ss_pred HHHHHH---hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 003868 389 MISGLA---QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433 (790)
Q Consensus 389 li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 433 (790)
+|++|. +-.+.+.|+-.+.+|++.| .|....-..++.+.-..|.
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 444444 3567999999999999999 7776666666666655554
No 321
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.59 E-value=4.1e+02 Score=23.76 Aligned_cols=177 Identities=8% Similarity=-0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHhhhCCC---CChHHHHHHHHHHhcCCChHHHHHHHhhCCCC-CCCcchHHHHHHHHHhCCC
Q 003868 54 NRLIDIYCKSLKLVYARTLFDEIPQ---PDIVARTTLIAAYSASDNVKLAREMFNKTPLK-MRDTVFYNAMITAYSHNSN 129 (790)
Q Consensus 54 ~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~n~li~~~~~~g~ 129 (790)
+..|...++.|+++....+++.-.. .......+.+...+..|+.+-...+++.-... .+|..-++.+..+.....
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~- 85 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGX- 85 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC-
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCH-
Q ss_pred chHHHHHHHHhhhCCCCC---ChhhHHHHHHHHhcchhhhhhhhhHHHHHHHhCCCCchhH--HHHHHHhhhccCCCCcc
Q 003868 130 GHAAIELFRDMRRDDVKP---DNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSV--LNALISVYVKCVSSPFV 204 (790)
Q Consensus 130 ~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~li~~y~~~~~~~~~ 204 (790)
.++++.+.+.|..+ |..-.+.+..++..... .+...+.+.|..++... ..+.+...+..
T Consensus 86 ----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~------~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~------ 149 (231)
T 3aji_A 86 ----DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRH------EIAVMLLEGGANPDAKDHYDATAMHRAAAK------ 149 (231)
T ss_dssp ----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHH------
T ss_pred ----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH------HHHHHHHHcCCCCCCcCCCCCcHHHHHHHc------
Q ss_pred CCCCCHHHHHHHHccCCCCCeeeHH--HHHHHHHhCCChhHHHHHHHh
Q 003868 205 SSRSLMGAARRVFDEMPERDELSWT--TMMTGYVKNDYLDAAREFLDG 250 (790)
Q Consensus 205 ~~~g~~~~A~~~f~~~~~~~~~~~~--~li~~~~~~g~~~~A~~l~~~ 250 (790)
|..+-+..+++.-...+..... +-+...++.|+.+-+.-+++.
T Consensus 150 ---~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 194 (231)
T 3aji_A 150 ---GNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194 (231)
T ss_dssp ---TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred ---CCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC
No 322
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=22.37 E-value=3.1e+02 Score=25.46 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=9.8
Q ss_pred HHHHHhcCChHHHHHHHHHH
Q 003868 491 IAALGQHGNGARAIELYEQM 510 (790)
Q Consensus 491 i~~~~~~g~~~~A~~~~~~m 510 (790)
+..+.+-|+.++|.++|=+.
T Consensus 98 v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 98 TENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCChhHHHHHHHHH
Confidence 34444555555555555433
No 323
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=21.70 E-value=1e+02 Score=16.57 Aligned_cols=17 Identities=47% Similarity=0.642 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q 003868 680 AQAVYKYLEQLVLEMRK 696 (790)
Q Consensus 680 ~~~~~~~l~~l~~~m~~ 696 (790)
+.+.|+.++.+.+++++
T Consensus 3 adelykeledlqerlrk 19 (27)
T 3twe_A 3 ADELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46777777777776654
No 324
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=21.64 E-value=3.3e+02 Score=26.85 Aligned_cols=19 Identities=26% Similarity=0.193 Sum_probs=8.8
Q ss_pred HHHHHCCCHHHHHHHHhhC
Q 003868 329 TLYWKCGKVNEARDIFNQM 347 (790)
Q Consensus 329 ~~~~~~g~~~~A~~~f~~m 347 (790)
...+..|+.+-+.-+++.-
T Consensus 58 ~~A~~~g~~~~v~~Ll~~g 76 (364)
T 3ljn_A 58 HLACKFGCVDTAKYLASVG 76 (364)
T ss_dssp HHHHHHCCHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHCC
Confidence 3334445555544444443
No 325
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=21.57 E-value=2.5e+02 Score=27.45 Aligned_cols=61 Identities=11% Similarity=0.082 Sum_probs=44.4
Q ss_pred HHhCCCCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCC
Q 003868 578 IDSLPFKPSA--PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652 (790)
Q Consensus 578 ~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 652 (790)
|...+++|.- -+..+-++.+.+++++..|-.+.++++++.|+.. ..++|.++.....+.+.
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~~ 249 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNPT 249 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSCC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCCC
Confidence 4444556543 3566777888999999999999999999987521 33668888887776544
No 326
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=21.53 E-value=4.1e+02 Score=23.75 Aligned_cols=182 Identities=8% Similarity=-0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHhhCCCC--CCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCC--------ChhhHH
Q 003868 84 RTTLIAAYSASDNVKLAREMFNKTPLK--MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP--------DNFTFT 153 (790)
Q Consensus 84 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p--------~~~t~~ 153 (790)
..+.+...++.|+.+....+++.-... .+|..-++.|..+..... .++++.+.+.|..+ |..-.+
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~~~~~~~~~~~~~~~~g~t 77 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDN-----LEAAMVLMEAAPELVFEPMTSELYEGQT 77 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTC-----HHHHHHHHHHCGGGGGCCCCSTTTTTCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCchhccccccccCCCCcC
Q ss_pred HHHHHHhcchhhhhhhhhHHHHHHHhCCCCchh---------------HHHHHHHhhhccCCCCccCCCCCHHHHHHHHc
Q 003868 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS---------------VLNALISVYVKCVSSPFVSSRSLMGAARRVFD 218 (790)
Q Consensus 154 ~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---------------~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~ 218 (790)
.|..++..... .+...+++.|..++.. ...+.+...++. |+.+-+..+++
T Consensus 78 ~L~~A~~~~~~------~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~---------~~~~~v~~Ll~ 142 (232)
T 2rfa_A 78 ALHIAVINQNV------NLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV---------GSEEIVRLLIE 142 (232)
T ss_dssp HHHHHHHTTCH------HHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHH---------TCHHHHHHHHH
T ss_pred HHHHHHHcCCH------HHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHc---------CCHHHHHHHHH
Q ss_pred cCCCCCeeeHH--HHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCC--------hhhHHHH
Q 003868 219 EMPERDELSWT--TMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLD--------EFTYTSV 288 (790)
Q Consensus 219 ~~~~~~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~--------~~t~~~l 288 (790)
.-...+..... +-+...+..|+.+-+..+++.+ ...|..++ ...-.+.
T Consensus 143 ~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~L----------------------l~~g~~~~~~~~~~~~~~~g~tp 200 (232)
T 2rfa_A 143 HGADIRAQDSLGNTVLHILILQPNKTFACQMYNLL----------------------LSYDGGDHLKSLELVPNNQGLTP 200 (232)
T ss_dssp TTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHH----------------------HHTTCSCSSCCGGGCCCTTSCCH
T ss_pred CCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHH----------------------HhcCCchhhhhhhccCCCCCCCH
Q ss_pred HHHHHccCChHHHHHHHHH
Q 003868 289 ISACANSGLFRLGKQVHAY 307 (790)
Q Consensus 289 l~~~~~~~~~~~a~~~~~~ 307 (790)
+...+..|+.+.++.+++.
T Consensus 201 l~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 201 FKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhc
No 327
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.51 E-value=2.3e+02 Score=28.14 Aligned_cols=78 Identities=10% Similarity=0.030 Sum_probs=50.4
Q ss_pred HHHHHhhhccCCCCccCCCCCHHHHHHHHccCCCCC---eeeHHHHHHHHHhCC-ChhHHHHHHHhcccCCcchhhHHHH
Q 003868 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERD---ELSWTTMMTGYVKND-YLDAAREFLDGMSENVGVAWNALIS 264 (790)
Q Consensus 189 ~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~~~~~~~~li~ 264 (790)
+.++.=|... |+.++|.+.++++..|. .+....+..++-+.. ..+.+..++..+.+.+.++.+.+..
T Consensus 15 ~~ll~Ey~~~---------~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~ 85 (339)
T 1ug3_A 15 KAIIEEYLHL---------NDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQ 85 (339)
T ss_dssp HHHHHHHHHH---------CCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHhC---------CCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 4566667676 99999999999998763 223333333333222 2455777888887777777777777
Q ss_pred hhhhhHHHHHH
Q 003868 265 GYVHRELKMLM 275 (790)
Q Consensus 265 ~~~~~~~~m~~ 275 (790)
|+.+-...+..
T Consensus 86 Gf~~~~~~l~D 96 (339)
T 1ug3_A 86 GLYEILELAED 96 (339)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhChH
Confidence 76666554443
No 328
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=21.29 E-value=1.9e+02 Score=30.55 Aligned_cols=52 Identities=13% Similarity=0.020 Sum_probs=33.1
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHH
Q 003868 594 LAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645 (790)
Q Consensus 594 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 645 (790)
....+-....+.|...|.++..+.|.+...|+.|+.+....|+.-+|.-.+-
T Consensus 159 GDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~ 210 (497)
T 1ya0_A 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYC 210 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHH
Confidence 3334444556677777777777777777777777777776666655554433
No 329
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.13 E-value=3e+02 Score=24.67 Aligned_cols=44 Identities=23% Similarity=0.263 Sum_probs=34.9
Q ss_pred HHHHHHh---cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC
Q 003868 490 MIAALGQ---HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533 (790)
Q Consensus 490 li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 533 (790)
+|+++.+ -.+++.|+-.+-+|++.|-.|..+.-..++.+....|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 4566544 5789999999999999998888887777777776665
No 330
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=20.85 E-value=5.7e+02 Score=24.63 Aligned_cols=254 Identities=11% Similarity=0.057 Sum_probs=0.0
Q ss_pred CCcchhccchhHHHHHHhhcCCCCCCCchHHHHHHHHHHHcCCCCCcchHH---HHHHHHHhcCChhHHHHHhhhCCCCC
Q 003868 4 KNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIIN---RLIDIYCKSLKLVYARTLFDEIPQPD 80 (790)
Q Consensus 4 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~ll~~~~~~~~~~~A~~~~~~~~~~~ 80 (790)
+.+...+.....=...|...++.++ ..+.+.+++.|..++...-. +-|..-++.|+.+-+.-+++.-..++
T Consensus 13 p~~s~~~~~~~~~~t~L~~Av~~g~------~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~ 86 (337)
T 4g8k_A 13 PTSSSGRRAAVEDNHLLIKAVQNED------VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 86 (337)
T ss_dssp --------CHHHHHHHHHHHHHTTC------HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred CCCccCCCCCCCCChHHHHHHHcCC------HHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchh
Q ss_pred hHHHH-----------------------------------HHHHHHhcCCChHHHHHHHhhCCCCCCCcchHH-------
Q 003868 81 IVART-----------------------------------TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYN------- 118 (790)
Q Consensus 81 ~~~~~-----------------------------------~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~n------- 118 (790)
..... +.+...+..|..+-...+++.-.. ++...-.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~--~~~~~~~~~~~~~~ 164 (337)
T 4g8k_A 87 LRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN--VNLRRKTKEDQERL 164 (337)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC--TTCCCCCC-----C
T ss_pred hhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCC--cchhhccccccccc
Q ss_pred -----HHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchhhhhhhhhHHHHHHHhCCCCch--hHHHHH
Q 003868 119 -----AMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFT--SVLNAL 191 (790)
Q Consensus 119 -----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~l 191 (790)
+-+..-++.|+.+-+..++++.-..--..|..-.+.+..++......... .+...+++.|..++. ....+.
T Consensus 165 ~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~--~i~~lLl~~gad~n~~d~~g~t~ 242 (337)
T 4g8k_A 165 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE--AITHLLLDHGADVNVRGERGKTP 242 (337)
T ss_dssp TTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHH--HHHHHHHHTTCCTTCCCGGGCCH
T ss_pred cCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHH--HHHHHHHHCCCCCCCcCCCCCCH
Q ss_pred HHhhhccCCCCccCCCCCHHHHHHHHcc----CCCCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhh
Q 003868 192 ISVYVKCVSSPFVSSRSLMGAARRVFDE----MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV 267 (790)
Q Consensus 192 i~~y~~~~~~~~~~~~g~~~~A~~~f~~----~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~ 267 (790)
+...++. |..+.+..+++. +..+|..-++.|..+ ++.|+.+-+.-+++
T Consensus 243 L~~a~~~---------~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~~iv~~Ll~------------------ 294 (337)
T 4g8k_A 243 LILAVEK---------KHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLKKIAELLCK------------------ 294 (337)
T ss_dssp HHHHHHT---------TCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCHHHHHHHHT------------------
T ss_pred HHHHHHh---------hhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCHHHHHHHHH------------------
Q ss_pred hhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHH
Q 003868 268 HRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306 (790)
Q Consensus 268 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 306 (790)
.|..+|..+ .+...++.|+.+.++-+++
T Consensus 295 --------~GAd~n~~~---~L~~A~~~~~~~iv~~Ll~ 322 (337)
T 4g8k_A 295 --------RGASTDCGD---LVMTARRNYDHSLVKVLLS 322 (337)
T ss_dssp --------TSCSSTTCC---HHHHHHHTTCHHHHHHHHH
T ss_pred --------CCCCCCCCC---HHHHHHHcCCHHHHHHHHH
No 331
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.31 E-value=3.8e+02 Score=24.29 Aligned_cols=45 Identities=24% Similarity=0.358 Sum_probs=35.7
Q ss_pred HHHHHHh---cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC
Q 003868 490 MIAALGQ---HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534 (790)
Q Consensus 490 li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 534 (790)
+|++|.+ -.+++.|+-.+-+|++.|-.|..+.-..++.|....|.
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGl 85 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGL 85 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 4566544 57899999999999999988888877777777776663
No 332
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=20.13 E-value=2.6e+02 Score=21.31 Aligned_cols=60 Identities=18% Similarity=0.154 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCCCChHHHHHHHHHHhcCCChH
Q 003868 35 RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVK 98 (790)
Q Consensus 35 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 98 (790)
..+++.+.+.|+-.. ..+..+-. .....+.|.++++.++.....++..++.++...|...
T Consensus 25 ~~lld~L~~~~vlt~-~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 25 SYIMDHMISDGFLTI-SEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp HHHHHHHHHHTSSCH-HHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCCCCH-HHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 345556666554422 22222221 2344555555555555555555555555555544433
Done!