Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>003869
MASIDSLPFIDMTTLTQSELRALSLCSASAFDLNRLDDVVIPAIDRSIFNESAGSRRQTF
SRPSGTATTHHHHHIRHRIPVLPPSSKHHHQVSSLPPHLDPDHLENRSIINSLKQYLTQS
PQFQDVVPFFGTRANDNDNDDDDKHVLMRKRKRGRKPKTKVKSLEENLVMVNKNGSVVDI
VDLGSLEDPYGEELRRRTEGISANEEALLGFLRDLGGQWCSRRKKRKIVDADLLGDTLPV
GWKLLLGLKRREGRASVYCRRYISPGGQHFVSCKEVSGYLQSYFGLNDTNQSINPGGDEM
QQDYRVATDSLADIAQKENDQRQSNQQDKEVTLLGIDNLAEVQVRDLFECHKCEMTFDEK
DTYLQHLLSFHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFHERRRYNGHVGIHVRN
YVRGIEEPHGRLTLQKRTESPIRDEFPTRISKMDALIEIAQNSILETSTGGPNNEPVDDA
KFDTNMDELSDQQIIENMVTTEKMKKIDDAGCLMDVKVEACVDTGTSIPADEQNGCKSEA
SDGKDGLVFIAEEIDKSVIERESGAESCLLAPSINQNGCPVESNVNLGCLNTVEPGEPDE
VNNNKNIRVEACSGSSNVEPADEKLSAAVEENLKENLLQYGVSETSMSLLEPSHGFPTTN
AVSNKVEDEAHRIEQRHPNVTGFDDLRLDEIENMKFSFGTGQESGPLPEAPIQMSNNAGM
DGSYGSSTQVESEVLLNSTSRHHLTTLCVWCGMEFSHEVVDSEMQPDSVGYMCPTCKAKI
SGQLGGLGSS

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  003869
        (790 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2196526 - symbol:MBD8 "methyl-CPG-binding doma...   263  1.6e-30   2


>TAIR|locus:2196526 [details] [associations]
            symbol:MBD8 "methyl-CPG-binding domain 8" species:3702
            "Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;IEA;IDA] [GO:0008150
            "biological_process" evidence=ND] [GO:0008327 "methyl-CpG binding"
            evidence=ISS] InterPro:IPR001739 InterPro:IPR016177
            InterPro:IPR017956 Pfam:PF01429 Pfam:PF02178 PROSITE:PS50982
            SMART:SM00384 EMBL:AC068562 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0005634 GO:GO:0006355 GO:GO:0006351 SUPFAM:SSF54171
            Gene3D:3.30.890.10 GO:GO:0008327 EMBL:AK118852 EMBL:AY080662
            EMBL:AY133726 IPI:IPI00531759 IPI:IPI00539724 PIR:A86356
            RefSeq:NP_173650.3 RefSeq:NP_850949.1 UniGene:At.41609
            ProteinModelPortal:Q9LME6 SMR:Q9LME6 IntAct:Q9LME6 PRIDE:Q9LME6
            EnsemblPlants:AT1G22310.2 GeneID:838838 KEGG:ath:AT1G22310
            TAIR:At1g22310 eggNOG:NOG263610 HOGENOM:HOG000153045
            InParanoid:Q9LME6 OMA:FETCKEV PhylomeDB:Q9LME6
            ProtClustDB:CLSN2680127 Genevestigator:Q9LME6 Uniprot:Q9LME6
        Length = 524

 Score = 263 (97.6 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
 Identities = 70/175 (40%), Positives = 93/175 (53%)

Query:   165 EENLV-MVNKNGSVVDIVDLGSL-EDPYGEELRRRTEGISANEEALLGFLRDLGGQWCSR 222
             EE +V + N+ G++VD+  L S+ EDPY EELRR T G+   EE +LGFL  L G+W + 
Sbjct:   270 EELVVNLENREGTIVDLSALASVSEDPYEEELRRITVGLKTKEE-ILGFLEQLNGEWVNI 328

Query:   223 RKKRKIVDADLLGDTLPVGWXXXXXXXXXXXXASVYCRRYISPGGQHFVSCKEVSGYLQS 282
              KK+K+V+A   G  LP GW              + CRRYISP GQ F +CKEVS YL+S
Sbjct:   329 GKKKKVVNACDYGGYLPRGWRLMLYIKRKGSNLLLACRRYISPDGQQFETCKEVSTYLRS 388

Query:   283 YFGLNDTNQSINPGGDE--MQQDYRVATDSL---ADIAQKENDQR-QSNQQDKEV 331
                    NQ      D   + Q   +A +SL   +D    E  Q  +S +   EV
Sbjct:   389 LLESPSKNQHYYLQSDNKTLGQQPVIANESLLGNSDSMDSETMQYLESGRTSSEV 443

 Score = 151 (58.2 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
 Identities = 38/67 (56%), Positives = 45/67 (67%)

Query:     3 SIDSLPFIDMTTLTQSELRALSLCSA----SAFDLNRL---DDVVIPAIDRSIFNESAGS 55
             S +SLP ID   L+QSELRALS CS+    S+  L      DD + P IDRS+FNESAGS
Sbjct:    22 SAESLPLIDTRLLSQSELRALSQCSSLSPSSSASLAASAGGDDDLTPKIDRSVFNESAGS 81

Query:    56 RRQTFSR 62
             R+QTF R
Sbjct:    82 RKQTFLR 88


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.132   0.383    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      790       743   0.00088  121 3  11 23  0.45    34
                                                     37  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  364 KB (2180 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  77.35u 0.08s 77.43t   Elapsed:  00:00:04
  Total cpu time:  77.35u 0.08s 77.43t   Elapsed:  00:00:04
  Start:  Tue May 21 14:49:25 2013   End:  Tue May 21 14:49:29 2013

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