BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003870
(790 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A2F|X Chain X, Crystal Structure Of Sec15 C-Terminal Domain
Length = 325
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 136/326 (41%), Gaps = 22/326 (6%)
Query: 397 VGPVLEVLDKSQDKYHELLLEECQQQITTVLTNDTYEQMLMKKDTDYENNVLLFHLQSSD 456
V + E+L +D Y+E+LL+ +L + + M+++ +YE + F S
Sbjct: 2 VNILWELLHNMRDHYNEVLLQRWVHVFREILDKEQFLPMVVQNTEEYECIIERFPFHSEQ 61
Query: 457 IMPA-FPYIAPFSSMVPDACRIVRSFIKGSVDY-----LSYGMHANYFDVLRKYLDKLLI 510
+ A FP PFS MVP+ + F+ + + LS A ++RK + LL
Sbjct: 62 LENAPFPKKFPFSRMVPEVYHQAKEFMYACMKFAEELTLSPNEVAA---MVRKAANLLLT 118
Query: 511 DVLNEVILNTITGGSIGVSQAMQIAANITFLERACDYFLRHAAQLCGIPVRSVQKPQATL 570
+ + SI ++Q +QI + +LE+A + + Q P A
Sbjct: 119 RSFSGCLSVVFRQPSITLTQLIQIIIDTQYLEKAGPFLDEFVCHMTNTERSVSQTPSA-- 176
Query: 571 MAKVVLKTSRDAAYITLLNLVNTKLDEFMALTENINWTTEDTSQNGNEYMNEVIIYLDTL 630
+ +R A + + +K+DEF L+ +W + + ++ ++I YL +
Sbjct: 177 ----MFHVARQDAEKQVGLRICSKIDEFFELS-AYDWLLVEPPGIASAFITDMISYLKST 231
Query: 631 MSTAQQILPLDALYKVGSGALEHISNSIVSAFLSDSVKRFNANAVAIINHDLKKLEDFSD 690
+ LP A EHI+ I S + VK+ + A+ IN DL + E F+
Sbjct: 232 FDSFAFKLPHIA-QAACRRTFEHIAEKIYSIMYDEDVKQISTGALTQINLDLMQCEFFAA 290
Query: 691 EKFHITGLSEINPEGSFRRCLVEARQ 716
+ + GL EG + + RQ
Sbjct: 291 SE-PVPGLK----EGELSKYFLRNRQ 311
>pdb|2LCQ|A Chain A, Solution Structure Of The Endonuclease Nob1 From
P.Horikoshii
Length = 165
Score = 33.5 bits (75), Expect = 0.47, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 17/82 (20%)
Query: 57 VRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVGSALLIKLEE 116
V K+ E+ EL K E VL A ELK ++ SD+Y +Q + S L ++
Sbjct: 72 VAKETGEVNELSKADIE-----------VLALAYELKGEIFSDDYNVQNIASLLGLRFRT 120
Query: 117 LLESYAIKKNVTGAIKMGKICV 138
L K+ + IK +C+
Sbjct: 121 L------KRGIKKVIKWRYVCI 136
>pdb|4EFC|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Trypanosoma Brucei, Tb427tmp.160.5560
pdb|4EFC|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Trypanosoma Brucei, Tb427tmp.160.5560
Length = 472
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 27/143 (18%)
Query: 626 YLDTLMSTAQQILPLDALYKVGSGALEHISNSIVSAFLSDSVKRFNANAVAIINHDLKKL 685
Y L I+PL ++ L I+ S ++ +KR + NHD+K +
Sbjct: 58 YFTALCKDVPTIVPLRSVTDEQLQKLRKITLDCFSVSSAEEIKRLER----VTNHDIKAV 113
Query: 686 EDFSDEKFHITGLSEINPEGSFRRCLVEARQLINLLISSQPENFMNPVIREKNYNALDYK 745
E F E+ GLS + + ++ ++SQ + N A+
Sbjct: 114 EYFIKERMDTCGLSHVT-------------EFVHFGLTSQ----------DINNTAIPMM 150
Query: 746 KVASICEKFKDSPDGIFGSLSSR 768
+I + + DGI GSL+S+
Sbjct: 151 IRDAIVTLYLPALDGIIGSLTSK 173
>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v
Length = 686
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 14/115 (12%)
Query: 651 LEHISNSIVSAFLSDSVKRFNANAVAIINHDLKKLEDFSDEKFHITGLSEINPEGSFRRC 710
L H +NS V +L D++K + + I D+ K F +K + ++ P +F
Sbjct: 200 LNH-NNSTVDVYLKDAIKMWLDLGIDGIRMDVVKHMPFGWQKSFMAAVNNYKPVFTFGEW 258
Query: 711 LVEARQLINLLISSQPEN--FMNPVIREKNYNALDYKKVASICEKFKDSPDGIFG 763
+ ++ PEN F N E + LD++ + + F+D+ D ++G
Sbjct: 259 FLGVNEV-------SPENHKFAN----ESGMSLLDFRFAQKVRQVFRDNTDNMYG 302
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus
Circulans Strain 251 Cgtase E257q
Length = 686
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 14/115 (12%)
Query: 651 LEHISNSIVSAFLSDSVKRFNANAVAIINHDLKKLEDFSDEKFHITGLSEINPEGSFRRC 710
L H +NS V +L D++K + + I D K F +K + ++ P +F +
Sbjct: 200 LNH-NNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGQW 258
Query: 711 LVEARQLINLLISSQPEN--FMNPVIREKNYNALDYKKVASICEKFKDSPDGIFG 763
+ ++ PEN F N E + LD++ + + F+D+ D ++G
Sbjct: 259 FLGVNEV-------SPENHKFAN----ESGMSLLDFRFAQKVRQVFRDNTDNMYG 302
>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate
Dehydrogenase In Closed Conformation
Length = 315
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 1 MDAKTKRRIVTENGDTTGEDLVLATLIGNGDDLGPIVRHAFETGRP-EALL--HQLKSVV 57
+D R + + + + +D+ L G+GDD+ P+VR+++ G P E L+ +L+++V
Sbjct: 155 LDTARFRTFIAQELNLSVKDITGFVLGGHGDDMVPLVRYSYAGGIPLETLIPKERLEAIV 214
Query: 58 ---RKKEAEIEELC 68
RK EI L
Sbjct: 215 ERTRKGGGEIVGLL 228
>pdb|1O4U|A Chain A, Crystal Structure Of A Nicotinate Nucleotide
Pyrophosphorylase (Tm1645) From Thermotoga Maritima At
2.50 A Resolution
pdb|1O4U|B Chain B, Crystal Structure Of A Nicotinate Nucleotide
Pyrophosphorylase (Tm1645) From Thermotoga Maritima At
2.50 A Resolution
Length = 285
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 86 LVDAEELKSDLSSDNYRLQEVGSALLIKLEELLESYAIKKNVTGAIKMGKICVQVLDLCV 145
V +E K DL+S R G+ LL+K E ++ S I++ ++ ++ + L
Sbjct: 23 FVKEDEGKLDLASFPLRNTTAGAHLLLKTENVVAS---------GIEVSRMFLEKMGLLS 73
Query: 146 KCNNHITDGQFYPALKTIDLIEKN-YLQIIPVKALKMVIEKTIPVIKTHIEKKVTSQFNE 204
K N + DG++ I IE N Y ++ + L V+ V T T +F E
Sbjct: 74 KFN--VEDGEYLEGTGVIGEIEGNTYKLLVAERTLLNVLSVMFSVATT------TRRFAE 125
Query: 205 WLVHVRSSA 213
L H + +A
Sbjct: 126 KLKHAKIAA 134
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant G179l
Length = 686
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 651 LEHISNSIVSAFLSDSVKRFNANAVAIINHDLKKLEDFSDEKFHITGLSEINPEGSFRRC 710
L H +NS V +L D++K + + I D K F +K + ++ P +F
Sbjct: 200 LNH-NNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEW 258
Query: 711 LVEARQLINLLISSQPEN--FMNPVIREKNYNALDYKKVASICEKFKDSPDGIFG 763
+ ++ PEN F N E + LD++ + + F+D+ D ++G
Sbjct: 259 FLGVNEV-------SPENHKFAN----ESGMSLLDFRFAQKVRQVFRDNTDNMYG 302
>pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135n
Length = 686
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 651 LEHISNSIVSAFLSDSVKRFNANAVAIINHDLKKLEDFSDEKFHITGLSEINPEGSFRRC 710
L H +NS V +L D++K + + I D K F +K + ++ P +F
Sbjct: 200 LNH-NNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEW 258
Query: 711 LVEARQLINLLISSQPEN--FMNPVIREKNYNALDYKKVASICEKFKDSPDGIFG 763
+ ++ PEN F N E + LD++ + + F+D+ D ++G
Sbjct: 259 FLGVNEV-------SPENHKFAN----ESGMSLLDFRFAQKVRQVFRDNTDNMYG 302
>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 651 LEHISNSIVSAFLSDSVKRFNANAVAIINHDLKKLEDFSDEKFHITGLSEINPEGSFRRC 710
L H +NS V +L D++K + + I D K F +K + ++ P +F
Sbjct: 200 LNH-NNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEW 258
Query: 711 LVEARQLINLLISSQPEN--FMNPVIREKNYNALDYKKVASICEKFKDSPDGIFG 763
+ ++ PEN F N E + LD++ + + F+D+ D ++G
Sbjct: 259 FLGVNEV-------SPENHKFAN----ESGMSLLDFRFAQKVRQVFRDNTDNMYG 302
>pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 651 LEHISNSIVSAFLSDSVKRFNANAVAIINHDLKKLEDFSDEKFHITGLSEINPEGSFRRC 710
L H +NS V +L D++K + + I D K F +K + ++ P +F
Sbjct: 200 LNH-NNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEW 258
Query: 711 LVEARQLINLLISSQPEN--FMNPVIREKNYNALDYKKVASICEKFKDSPDGIFG 763
+ ++ PEN F N E + LD++ + + F+D+ D ++G
Sbjct: 259 FLGVNEV-------SPENHKFAN----ESGMSLLDFRFAQKVRQVFRDNTDNMYG 302
>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant N193g
Length = 686
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 651 LEHISNSIVSAFLSDSVKRFNANAVAIINHDLKKLEDFSDEKFHITGLSEINPEGSFRRC 710
L H +NS V +L D++K + + I D K F +K + ++ P +F
Sbjct: 200 LNH-NNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEW 258
Query: 711 LVEARQLINLLISSQPEN--FMNPVIREKNYNALDYKKVASICEKFKDSPDGIFG 763
+ ++ PEN F N E + LD++ + + F+D+ D ++G
Sbjct: 259 FLGVNEV-------SPENHKFAN----ESGMSLLDFRFAQKVRQVFRDNTDNMYG 302
>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
pdb|2DIJ|A Chain A, Complex Of A Y195f Mutant Cgtase From B. Circulans Strain
251 Complexed With A Maltononaose Inhibitor At Ph 9.8
Obtained After Soaking The Crystal With Acarbose And
Maltohexaose
Length = 686
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 651 LEHISNSIVSAFLSDSVKRFNANAVAIINHDLKKLEDFSDEKFHITGLSEINPEGSFRRC 710
L H +NS V +L D++K + + I D K F +K + ++ P +F
Sbjct: 200 LNH-NNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEW 258
Query: 711 LVEARQLINLLISSQPEN--FMNPVIREKNYNALDYKKVASICEKFKDSPDGIFG 763
+ ++ PEN F N E + LD++ + + F+D+ D ++G
Sbjct: 259 FLGVNEV-------SPENHKFAN----ESGMSLLDFRFAQKVRQVFRDNTDNMYG 302
>pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135a
Length = 686
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 651 LEHISNSIVSAFLSDSVKRFNANAVAIINHDLKKLEDFSDEKFHITGLSEINPEGSFRRC 710
L H +NS V +L D++K + + I D K F +K + ++ P +F
Sbjct: 200 LNH-NNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEW 258
Query: 711 LVEARQLINLLISSQPEN--FMNPVIREKNYNALDYKKVASICEKFKDSPDGIFG 763
+ ++ PEN F N E + LD++ + + F+D+ D ++G
Sbjct: 259 FLGVNEV-------SPENHKFAN----ESGMSLLDFRFAQKVRQVFRDNTDNMYG 302
>pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin
Glycosyltransferase From Bacillus Circulans Strain 251
In A Maltose-Dependent Crystal Form
pdb|1CXE|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.1 Based On Diffraction Data Of A Crystal Soaked
With Alpha-Cyclodextrin
pdb|1CXH|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.6 Based On Diffraction Data Of A Crystal Soaked
With Maltoheptaose
pdb|1CXI|A Chain A, Wild-Type Cgtase From Bacillus Circulans Strain 251 At 120
K And Ph 7.55
pdb|2CXG|A Chain A, Cyclodextrin Glycosyltransferase Complexed To The
Inhibitor Acarbose
Length = 686
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 651 LEHISNSIVSAFLSDSVKRFNANAVAIINHDLKKLEDFSDEKFHITGLSEINPEGSFRRC 710
L H +NS V +L D++K + + I D K F +K + ++ P +F
Sbjct: 200 LNH-NNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEW 258
Query: 711 LVEARQLINLLISSQPEN--FMNPVIREKNYNALDYKKVASICEKFKDSPDGIFG 763
+ ++ PEN F N E + LD++ + + F+D+ D ++G
Sbjct: 259 FLGVNEV-------SPENHKFAN----ESGMSLLDFRFAQKVRQVFRDNTDNMYG 302
>pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 651 LEHISNSIVSAFLSDSVKRFNANAVAIINHDLKKLEDFSDEKFHITGLSEINPEGSFRRC 710
L H +NS V +L D++K + + I D K F +K + ++ P +F
Sbjct: 200 LNH-NNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEW 258
Query: 711 LVEARQLINLLISSQPEN--FMNPVIREKNYNALDYKKVASICEKFKDSPDGIFG 763
+ ++ PEN F N E + LD++ + + F+D+ D ++G
Sbjct: 259 FLGVNEV-------SPENHKFAN----ESGMSLLDFRFAQKVRQVFRDNTDNMYG 302
>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN
Hexasaccharide Inhibitor
Length = 686
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 651 LEHISNSIVSAFLSDSVKRFNANAVAIINHDLKKLEDFSDEKFHITGLSEINPEGSFRRC 710
L H +NS V +L D++K + + I D K F +K + ++ P +F
Sbjct: 200 LNH-NNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEW 258
Query: 711 LVEARQLINLLISSQPEN--FMNPVIREKNYNALDYKKVASICEKFKDSPDGIFG 763
+ ++ PEN F N E + LD++ + + F+D+ D ++G
Sbjct: 259 FLGVNEV-------SPENHKFAN----ESGMSLLDFRFAQKVRQVFRDNTDNMYG 302
>pdb|3EEQ|A Chain A, Crystal Structure Of A Putative Cobalamin Biosynthesis
Protein G Homolog From Sulfolobus Solfataricus
pdb|3EEQ|B Chain B, Crystal Structure Of A Putative Cobalamin Biosynthesis
Protein G Homolog From Sulfolobus Solfataricus
Length = 336
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 18/116 (15%)
Query: 595 LDEFMALTENINWTTEDTS-----QNGNEYMNEVIIYLDTLMSTAQQILPLDALYKVGSG 649
+D + ENI +E+ S + EY ++++++L PL +GS
Sbjct: 168 IDVNVNFPENIKVNSEECSYIISLRGDKEYKDKIVVWLK----------PLKISIGIGSK 217
Query: 650 A---LEHISNSIVSAFLSDSVKRFNANAVAIINHDLKKLEDFSDEKFHITGLSEIN 702
+E I + I ++KR +A I ++KK+ D + +F + EIN
Sbjct: 218 KDVKMEEIRDGIYKVLERLNLKRERIGIIASIREEVKKIADEFNVRFRLVNEEEIN 273
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
pdb|1TCM|B Chain B, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
Length = 686
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 651 LEHISNSIVSAFLSDSVKRFNANAVAIINHDLKKLEDFSDEKFHITGLSEINPEGSFRRC 710
L H +NS V +L D++K + + I D K F +K + ++ P +F
Sbjct: 200 LNH-NNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEW 258
Query: 711 LVEARQLINLLISSQPEN--FMNPVIREKNYNALDYKKVASICEKFKDSPDGIFG 763
+ ++ PEN F N E + LD++ + + F+D+ D ++G
Sbjct: 259 FLGVNEV-------SPENHKFAN----ESGMSLLDFRFAQKVRQVFRDNTDNMYG 302
>pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195
Length = 686
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 651 LEHISNSIVSAFLSDSVKRFNANAVAIINHDLKKLEDFSDEKFHITGLSEINPEGSFRRC 710
L H +NS V +L D++K + + I D K F +K + ++ P +F
Sbjct: 200 LNH-NNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEW 258
Query: 711 LVEARQLINLLISSQPEN--FMNPVIREKNYNALDYKKVASICEKFKDSPDGIFG 763
+ ++ PEN F N E + LD++ + + F+D+ D ++G
Sbjct: 259 FLGVNEV-------SPENHKFAN----ESGMSLLDFRFAQKVRQVFRDNTDNMYG 302
>pdb|4ACO|A Chain A, Structure Of The Budding Yeast Ndc10 N-Terminal Domain
Length = 956
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 738 NYNALDYKKVASICEKFKDSPDGIFGSLS 766
N+ +LD K ICEK +D +G F L+
Sbjct: 905 NHESLDRYKAVDICEKLRDQNEGSFSRLA 933
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,952,658
Number of Sequences: 62578
Number of extensions: 890040
Number of successful extensions: 2397
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 2386
Number of HSP's gapped (non-prelim): 39
length of query: 790
length of database: 14,973,337
effective HSP length: 107
effective length of query: 683
effective length of database: 8,277,491
effective search space: 5653526353
effective search space used: 5653526353
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)