Query 003870
Match_columns 790
No_of_seqs 134 out of 219
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 13:29:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003870.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003870hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2176 Exocyst complex, subun 100.0 1E-166 3E-171 1405.0 74.1 758 21-790 21-797 (800)
2 PF04091 Sec15: Exocyst comple 100.0 1.6E-78 3.4E-83 656.1 23.4 305 442-755 1-311 (311)
3 PF10191 COG7: Golgi complex c 99.4 2.6E-07 5.5E-12 112.3 63.5 599 47-755 37-765 (766)
4 PF06248 Zw10: Centromere/kine 98.4 0.0049 1.1E-07 73.6 41.5 364 45-439 11-407 (593)
5 PF04437 RINT1_TIP1: RINT-1 / 98.3 0.00054 1.2E-08 80.0 30.6 335 352-724 67-448 (494)
6 PF10475 DUF2450: Protein of u 98.3 4.9E-05 1.1E-09 82.6 20.6 156 48-204 35-190 (291)
7 PF15469 Sec5: Exocyst complex 98.1 9.3E-05 2E-09 74.8 16.6 145 62-206 2-152 (182)
8 PF04048 Sec8_exocyst: Sec8 ex 98.0 0.00015 3.2E-09 70.6 14.1 105 45-149 37-141 (142)
9 PF10392 COG5: Golgi transport 97.9 0.00047 1E-08 66.2 15.5 105 43-147 28-132 (132)
10 PF07393 Sec10: Exocyst comple 97.8 0.2 4.4E-06 61.3 52.5 169 571-756 520-701 (710)
11 PF06148 COG2: COG (conserved 97.6 4.1E-05 8.9E-10 73.5 2.8 111 41-151 23-133 (133)
12 KOG0412 Golgi transport comple 97.2 0.82 1.8E-05 54.2 50.9 628 44-754 34-768 (773)
13 KOG3691 Exocyst complex subuni 97.2 0.037 8E-07 66.2 21.2 141 33-174 32-179 (982)
14 PF08700 Vps51: Vps51/Vps67; 97.0 0.0069 1.5E-07 53.5 10.0 74 33-106 8-84 (87)
15 KOG2176 Exocyst complex, subun 96.9 1.6 3.5E-05 52.6 32.7 452 89-690 82-563 (800)
16 KOG2347 Sec5 subunit of exocys 96.8 2 4.2E-05 52.2 34.0 587 45-692 188-878 (934)
17 PF04100 Vps53_N: Vps53-like, 96.5 0.14 3.1E-06 57.9 18.4 160 45-206 22-185 (383)
18 PF10474 DUF2451: Protein of u 96.4 0.088 1.9E-06 55.6 15.3 115 577-694 52-171 (234)
19 PF04124 Dor1: Dor1-like famil 96.4 0.25 5.3E-06 55.1 19.6 115 51-168 17-134 (338)
20 KOG2307 Low density lipoprotei 95.6 6.3 0.00014 45.9 52.9 564 39-692 41-676 (705)
21 PF06046 Sec6: Exocyst complex 95.2 2.6 5.7E-05 50.1 23.0 340 369-752 160-527 (566)
22 PF01843 DIL: DIL domain; Int 95.0 0.092 2E-06 48.2 7.8 101 647-758 3-103 (105)
23 KOG2180 Late Golgi protein sor 93.7 3.6 7.7E-05 49.1 18.3 125 44-168 36-160 (793)
24 PF12022 DUF3510: Domain of un 91.2 1.5 3.2E-05 41.8 9.4 73 590-662 7-79 (125)
25 KOG2211 Predicted Golgi transp 91.2 40 0.00087 40.4 45.8 146 21-166 48-195 (797)
26 PF06419 COG6: Conserved oligo 88.3 69 0.0015 38.9 22.6 235 346-633 158-414 (618)
27 KOG2033 Low density lipoprotei 83.5 1.1E+02 0.0025 36.9 38.1 138 47-195 23-167 (863)
28 PF14923 CCDC142: Coiled-coil 81.5 9 0.00019 44.1 10.2 84 606-691 261-348 (450)
29 PRK00794 flbT flagellar biosyn 69.8 9.4 0.0002 36.8 5.4 28 139-166 92-119 (132)
30 PRK12791 flbT flagellar biosyn 66.6 8 0.00017 37.2 4.2 27 140-166 90-116 (131)
31 KOG2346 Uncharacterized conser 64.3 16 0.00035 42.1 6.7 112 53-164 58-169 (636)
32 PF07378 FlbT: Flagellar prote 64.1 15 0.00032 35.2 5.5 30 137-166 88-117 (126)
33 PF10158 LOH1CR12: Tumour supp 60.5 1.7E+02 0.0036 28.3 13.1 100 34-142 3-104 (131)
34 PF04136 Sec34: Sec34-like fam 54.7 1.7E+02 0.0038 28.9 11.5 67 71-147 15-81 (157)
35 PF08651 DASH_Duo1: DASH compl 52.2 1.2E+02 0.0025 26.7 8.6 64 98-164 12-75 (78)
36 COG0497 RecN ATPase involved i 51.3 5.1E+02 0.011 31.1 23.5 166 45-212 137-333 (557)
37 KOG0994 Extracellular matrix g 49.1 6.4E+02 0.014 32.8 16.8 14 160-173 1709-1722(1758)
38 KOG3691 Exocyst complex subuni 48.0 1.1E+02 0.0024 37.9 10.3 152 607-780 817-969 (982)
39 TIGR00634 recN DNA repair prot 45.8 6E+02 0.013 30.4 21.7 169 45-217 142-342 (563)
40 PRK10869 recombination and rep 44.4 6.3E+02 0.014 30.3 22.5 170 45-217 138-337 (553)
41 PF08654 DASH_Dad2: DASH compl 42.7 2E+02 0.0044 26.6 9.0 65 53-132 2-66 (103)
42 PF10392 COG5: Golgi transport 39.8 3.4E+02 0.0074 25.9 14.1 104 50-153 28-131 (132)
43 PF04728 LPP: Lipoprotein leuc 39.6 2.2E+02 0.0047 23.5 8.5 49 80-128 3-51 (56)
44 PRK09973 putative outer membra 36.0 2.9E+02 0.0064 24.7 8.6 36 81-116 25-60 (85)
45 PRK09973 putative outer membra 34.4 2E+02 0.0044 25.7 7.3 57 88-164 25-81 (85)
46 PF10540 Membr_traf_MHD: Munc1 33.4 3.2E+02 0.007 26.3 9.4 74 618-691 2-100 (137)
47 KOG4552 Vitamin-D-receptor int 31.0 3.3E+02 0.0071 28.3 9.1 49 55-111 50-98 (272)
48 KOG0774 Transcription factor P 29.6 7.4E+02 0.016 26.7 12.6 103 21-128 78-196 (334)
49 COG5443 FlbT Flagellar biosynt 28.4 50 0.0011 31.6 2.7 27 140-166 94-120 (148)
50 PF10473 CENP-F_leu_zip: Leuci 27.8 5.8E+02 0.013 24.9 10.4 69 74-142 4-72 (140)
51 TIGR00606 rad50 rad50. This fa 27.8 1.6E+03 0.034 30.0 23.9 118 47-170 694-815 (1311)
52 PF07464 ApoLp-III: Apolipopho 26.6 1.2E+02 0.0026 30.1 5.2 101 28-138 23-130 (155)
53 KOG3821 Heparin sulfate cell s 26.2 2.5E+02 0.0054 33.3 8.3 46 467-513 126-175 (563)
54 COG0598 CorA Mg2+ and Co2+ tra 25.9 9.1E+02 0.02 26.5 13.0 120 54-173 153-275 (322)
55 KOG3647 Predicted coiled-coil 25.3 7.8E+02 0.017 26.7 11.0 85 105-197 137-226 (338)
56 TIGR03185 DNA_S_dndD DNA sulfu 25.1 1.2E+03 0.027 28.3 14.7 74 65-138 383-458 (650)
57 PF14276 DUF4363: Domain of un 25.0 3.6E+02 0.0078 25.1 8.0 61 134-195 22-89 (121)
58 KOG2391 Vacuolar sorting prote 24.7 5.1E+02 0.011 29.0 9.9 117 84-215 218-346 (365)
59 PF04097 Nic96: Nup93/Nic96; 24.1 2.9E+02 0.0064 33.5 9.0 60 108-167 472-532 (613)
60 PRK05287 hypothetical protein; 23.7 4E+02 0.0086 28.7 8.8 99 46-162 21-123 (250)
61 PF07464 ApoLp-III: Apolipopho 23.6 7.4E+02 0.016 24.6 10.7 67 84-152 31-98 (155)
62 PF14643 DUF4455: Domain of un 23.6 1.2E+03 0.026 27.2 17.6 151 33-206 310-460 (473)
63 KOG0250 DNA repair protein RAD 23.5 1.7E+03 0.037 28.9 15.4 122 84-208 405-528 (1074)
64 PF07072 DUF1342: Protein of u 23.3 2.4E+02 0.0053 29.4 7.0 124 70-217 20-152 (211)
65 KOG3745 Exocyst subunit - Sec1 23.3 1.5E+03 0.033 28.2 47.7 142 50-195 65-209 (763)
66 PF01544 CorA: CorA-like Mg2+ 21.8 9.3E+02 0.02 25.3 11.5 95 78-172 149-246 (292)
67 PF08317 Spc7: Spc7 kinetochor 21.4 1.1E+03 0.024 26.0 14.0 26 126-151 245-270 (325)
68 cd07637 BAR_ACAP3 The Bin/Amph 20.5 9.5E+02 0.021 24.8 13.1 41 67-107 34-74 (200)
69 PRK03918 chromosome segregatio 20.1 1.8E+03 0.038 27.7 15.3 20 188-207 735-754 (880)
No 1
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-166 Score=1405.00 Aligned_cols=758 Identities=41% Similarity=0.670 Sum_probs=706.5
Q ss_pred hHHHhhhcCCCchhHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 003870 21 LVLATLIGNGDDLGPIVRHAFETGRPEALLHQLKSVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDN 100 (790)
Q Consensus 21 ~~~~~~~~~~d~l~piik~~~~~~~~~~~l~~L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n 100 (790)
.++...+-++|.|||++|.+++.|+++.|+++|+.+|+.||.|||+||+.|||||++||+||++||.++.+|++++++.|
T Consensus 21 il~~~estDtd~~gP~lRs~~d~~~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd~N 100 (800)
T KOG2176|consen 21 ILLEIESTDTDDWGPTLRSVYDGNQHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSDTN 100 (800)
T ss_pred HHHHHhccchhhhhhHHHHHHccCCcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 67776677777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHhhHHHHHHhhcCCCCchHHH
Q 003870 101 YRLQEVGSALLIKLEELLESYAIKKNVTGAIKMGKICVQVLDLCVKCNNHITDGQFYPALKTIDLIEKNYLQIIPVKALK 180 (790)
Q Consensus 101 ~~Lq~s~~~L~~kk~~L~~~r~v~~nI~eai~~L~~cl~VLel~~k~~e~i~ekkyy~ALktLd~Le~~~L~~v~~~~f~ 180 (790)
..||++|++|+.++++|+++|.+++||++|+++++.|+||||+|+||+++|++|+||+||||||.||+.|||.++.|.|+
T Consensus 101 ~rLQ~~g~eLiv~~e~lv~~r~~~rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktle~lE~~yL~~~~~~~~~ 180 (800)
T KOG2176|consen 101 RRLQESGKELIVKKEDLVRCRTQSRNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKTLESLEKVYLPRVSNFRFL 180 (800)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHH-HHHHHHHhhhhccCCCCCcccccccC
Q 003870 181 MVIEKTIPVIKTHIEKKVTSQFNEWLVHVRSSAKDIGQTAIGRAASARQRDEE-MLDRQRKAEEQNLSGFGDFSFTLEVE 259 (790)
Q Consensus 181 ~~i~~sIP~lr~~Ik~~~~~~l~~WL~~IR~~s~~IG~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~e 259 (790)
.+|+.+||.+|+.|+++|++++++||++||++|++||+.|++++.+.|+||++ ...+++..+..+..+.....+.+..+
T Consensus 181 ~~i~~~Ip~ik~~i~~~~~~~~~e~L~~irk~s~~iGq~ai~~~~~ar~r~~~~~~~~~~~~e~~~~~~l~~l~~~~~~e 260 (800)
T KOG2176|consen 181 IVIQNRIPFIKEVIKSKSMSDFREWLENIRKKSPKIGQTAIQQAKEARQRWEEEKFNKQIEAEEQSTGSLAKLAYGLEFE 260 (800)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhccchHHHhhhhhHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999995 44444444444444444444444333
Q ss_pred CcC--cc------------cccccCcchHHHHHHHHHhcCChhHHHHHHHHHhHhhhhccccCCCccch-HHHHHHHHHH
Q 003870 260 DID--ED------------SVLKFDLTPLYRAYHIHTCLGIPSQFREYYYRNRLLQLTSDLQISSVQPF-VESYQTFLAQ 324 (790)
Q Consensus 260 ~~~--e~------------~~~~iDf~Ply~cihI~~~Lg~~e~F~~yY~~~Rr~Q~~l~l~~~~~~~~-~~~l~~yl~~ 324 (790)
+.+ ++ ....|||+|+|||+|||..||.++.|+.||++||+.|+.+++++|.++.+ +++|++|+.+
T Consensus 261 ~d~~~~s~~~~~~~~~~~~~~~~~d~~plyr~~hi~~~Lg~~~~f~~~y~~nr~~q~~~~~q~~~t~~~~l~~~~ty~~~ 340 (800)
T KOG2176|consen 261 EDDEHDSIMIFQDLNELSGAIDKFDFEPLYRCLHIHSVLGLRERFRAYYQMNRRLQADLVLQPPFTQLDSLEGYQTYFNQ 340 (800)
T ss_pred cccccccchhccCcccccchheeecccHHHHHHHHHHHHhhHHHHHHHHHHhHHHhhhcccCCCcchhhHHHHHHHHHHH
Confidence 211 11 24579999999999999999999999999999999999999999876655 8999999999
Q ss_pred HhhHHhhhHHHHhhhCCCCChhhHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhcCCCchhHHHHH
Q 003870 325 IAGYFIVEDRVLRTAGGLLLPDQLETMWETAVAKITSVLEEQFSHMDSATHLLLVKDYVTLLGATLRQYGYEVGPVLEVL 404 (790)
Q Consensus 325 I~GFFvvE~~vl~tt~~l~s~~~vdelW~~~~~kl~~~l~~~~~~~~~~~~ll~iK~~i~lf~~tl~~ygy~v~~L~~~L 404 (790)
|+||||||+||++|+++++|.++|+++|+++|+|+++.|+.++++|++|+++|++||+|+|++.||++|||+|+||+++|
T Consensus 341 i~Gffived~il~t~~~~~s~~~ve~lW~~~i~k~v~~L~~~~s~~~t~~~ll~lKd~i~L~~~tl~~yg~~V~~l~~~l 420 (800)
T KOG2176|consen 341 IAGFFIVEDHILRTTGGFLSYNEVEELWDTAISKLVATLSYQSSRCQTPNHLLKLKDLIVLLGATLENYGFNVEPLYDLL 420 (800)
T ss_pred HhhHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHhHHHHHHHHHHHcCCchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCcccccCChHHHHhhhhhccCCCCCCCC-CCCccccCCCchHHHHHHHHHHHH
Q 003870 405 DKSQDKYHELLLEECQQQITTVLTNDTYEQMLMKKDTDYENNVLLFHLQSSDIMP-AFPYIAPFSSMVPDACRIVRSFIK 483 (790)
Q Consensus 405 ~~l~d~Y~elL~~~~~~~f~~il~~D~y~Pm~V~~~eey~~~v~~~~~~~~~~~~-~fP~~lPFS~~vP~~c~~ir~fi~ 483 (790)
.++||+|+++|+++|++.|++++++|+|+||+|+++++|++++..||+++.+..+ |||+++|||+|||+||+++|+||+
T Consensus 421 ~~~rdky~e~LL~~~~~~f~e~l~~D~f~pm~V~~e~~Ye~~v~~fp~~~~e~~~~~Fp~~~pFS~mvP~~c~~~k~fi~ 500 (800)
T KOG2176|consen 421 VEIRDKYHEVLLRKWRKIFREALEKDDFMPMVVKKEEEYEKNVLSFPFQNEELEPLPFPKTFPFSPMVPDVCTQAKKFIY 500 (800)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhhcccccccccHHHHhhhhhccccccccccCCCCcccCCCCcCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888777 999999999999999999999999
Q ss_pred HHHHHhccCCc--ccHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcChHHHHHHHHhHHHHHHHHHHHHHHHHHHcCCCcc
Q 003870 484 GSVDYLSYGMH--ANYFDVLRKYLDKLLIDVLNEVILNTITGGSIGVSQAMQIAANITFLERACDYFLRHAAQLCGIPVR 561 (790)
Q Consensus 484 ~~~~f~~~~~~--~eide~v~ks~d~lL~~~v~~~L~~~i~~~~~~l~qi~QI~iN~~~le~ac~~~e~~~~~l~~~~~~ 561 (790)
.|++|+++++. .++.+++++.++.++.+.++ +...+..+++|++|++||++|+.+||.||++|..|++..+|++.+
T Consensus 501 ~~v~fls~~~l~~~e~~~~~~~~~~l~l~rs~v--l~~~~~~~~~~lsq~~QI~~n~~~fe~a~~~f~~~a~~~~~~~~~ 578 (800)
T KOG2176|consen 501 ACVKFLSDLVLLETEVLNKIRKDTNLLLTRSLV--LSLTSSLPSLNLSQAMQIAANLDYFEIAADFFLEFACHLNGIPNR 578 (800)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHhcccccHHHHHHHHHHHHHHHHhhHHHHHHHHHccCCccc
Confidence 99999997654 56788888889988888887 555555677899999999999999999999999999999999988
Q ss_pred ccCCccchhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhccccccCCCCCcchhHHHHHHHHHHHHHHHhhhCCHH
Q 003870 562 SVQKPQATLMAKVVLKTSRDAAYITLLNLVNTKLDEFMALTENINWTTEDTSQNGNEYMNEVIIYLDTLMSTAQQILPLD 641 (790)
Q Consensus 562 ~~~~~~~~l~a~~~f~~~r~~Ae~~I~~lv~~KIdeflel~~~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~~~~LP~~ 641 (790)
..+++.+ ...|..+|+.||++++.++++||||||++ .+|||+.+++|++||.||.||+.||++||.+++++||.+
T Consensus 579 ~~e~~~~----s~~l~~sr~~Ae~~l~~~i~~Kid~f~~l-~~~dW~t~e~pq~~~~~i~e~~~yLet~~~s~~q~LP~~ 653 (800)
T KOG2176|consen 579 DAERPSS----STKLLASRKLAETELIELIKLKIDDFLEL-IEYDWTTTEVPQGPSEYINEMLIYLETMFSSALQILPYK 653 (800)
T ss_pred ccccccc----chhhhhhhhhHHHHHHHHHhhhhHHHHHH-hhccccccccCCCccHHHHHHHHHHHHHHHHHHhhCcHH
Confidence 7777654 34466699999999999999999999995 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCccccccCHHHHHHHHHHHHHHHHhhhhhcccCCCcccCCcchHHHhhhHHHHHHHHh
Q 003870 642 ALYKVGSGALEHISNSIVSAFLSDSVKRFNANAVAIINHDLKKLEDFSDEKFHITGLSEINPEGSFRRCLVEARQLINLL 721 (790)
Q Consensus 642 v~~~~~~~a~~his~~ll~~Ll~~~vk~in~~al~n~~~Dv~~lE~f~~~~~~~~g~~~~~~~~~L~~~F~ELrQlidLl 721 (790)
+++++|+++|+|||++++++|+|+++|+||++||.||++||.|||+||++- |+||. ..+.+..+|.|+|||+|||
T Consensus 654 v~~~v~~~~~~his~~iv~llldd~ik~is~~Ai~~fnlDv~~lEsfa~~~-p~~~~----~~~~~~~~fielrQlinLL 728 (800)
T KOG2176|consen 654 VAQLVCLRELDHISTSIVGLLLDDSIKQISMGAITNFNLDVNYLESFAASP-PVPPN----QEGVLAKAFIELRQLINLL 728 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHccchhHHHHHHhccCC-CCCCc----ccchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999994 88876 5788999999999999999
Q ss_pred hcCCCccccchhhhcccCCCCChhhHHHHHhhhccCCCCcccccCCccccchhhhhhHHHHHHHhhcCC
Q 003870 722 ISSQPENFMNPVIREKNYNALDYKKVASICEKFKDSPDGIFGSLSSRNTKQSSRKKSMDMLKRRLKDFN 790 (790)
Q Consensus 722 ~s~~~~~y~~~~~R~~kY~rv~~~~~~~lLeK~~~~~~~~f~~~~~~~~~~~~rkk~~~~~~k~l~~~~ 790 (790)
++++|++|++|++|+|+|.||+|.+|+.+|||+++.++++||.+.++..++++++|++||++||||.++
T Consensus 729 ~~~~~e~y~~~~~r~rsY~rl~~~~a~t~lEK~~d~~d~~~~~~~~~~n~~~~k~k~id~~~krlk~~~ 797 (800)
T KOG2176|consen 729 LLSDWETYLNDYGRERSYNRLQPAKAATLLEKFKDSSDGINGLLCSRKNDRSAKKKLIDTVKKRLKEFF 797 (800)
T ss_pred HhcCHHHhhCchhhhhhhhccCHHHHHHHHHHHhcccccCcchhcccccccchhhhhHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999988887777789999999999999874
No 2
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=100.00 E-value=1.6e-78 Score=656.08 Aligned_cols=305 Identities=34% Similarity=0.541 Sum_probs=206.3
Q ss_pred HHHhhhhhccCCCCC----CCCCCCccccCCCchHHHHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHHHHHHHHHH
Q 003870 442 DYENNVLLFHLQSSD----IMPAFPYIAPFSSMVPDACRIVRSFIKGSVDYLSYGM--HANYFDVLRKYLDKLLIDVLNE 515 (790)
Q Consensus 442 ey~~~v~~~~~~~~~----~~~~fP~~lPFS~~vP~~c~~ir~fi~~~~~f~~~~~--~~eide~v~ks~d~lL~~~v~~ 515 (790)
||++++..||+++++ ..++||++||||++||+||++||+||++|++|+++++ ++|+|++|||++|+||++++|+
T Consensus 1 ey~~v~~~~~~~~~~~~~~~~~~fP~~lPFS~~vp~~c~~ir~fi~~~~~F~~~~~~~~~eid~~v~ks~d~lL~~~l~~ 80 (311)
T PF04091_consen 1 EYDKVLSVCWYKPDEDAELEQEPFPKKLPFSQMVPMCCRQIRSFIEKCYKFSDDLYQSSTEIDDIVRKSLDRLLTRVLNG 80 (311)
T ss_dssp HHHHHHTTS------------------SSSBTHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCcccccccccccCCCCeeCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 799999888887431 3468999999999999999999999999999999764 4899999999999999999999
Q ss_pred HHHHhhhcCCcChHHHHHHHHhHHHHHHHHHHHHHHHHHHcCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 003870 516 VILNTITGGSIGVSQAMQIAANITFLERACDYFLRHAAQLCGIPVRSVQKPQATLMAKVVLKTSRDAAYITLLNLVNTKL 595 (790)
Q Consensus 516 ~L~~~i~~~~~~l~qi~QI~iN~~~le~ac~~~e~~~~~l~~~~~~~~~~~~~~l~a~~~f~~~r~~Ae~~I~~lv~~KI 595 (790)
+|+++|+++ ++++|+|||+||++|||.||++|+.+++++++++.... ++.++.|+++|+++|++||++|+++|++||
T Consensus 81 ~L~~~i~~~-~~l~qi~Qi~iNl~~le~Ac~~le~~l~~~~~~~~~~~--~~~~l~a~~~f~~~r~~Ae~~I~~lv~~KI 157 (311)
T PF04091_consen 81 SLKSKIRSS-LNLSQIVQIVINLEYLEKACKELEEFLSSLRGIPQSAG--GHIRLKATKMFKDARKAAEKRIFELVNSKI 157 (311)
T ss_dssp HHHHHHT-T-S-HHHHHHHHHHHHHHHTTHHHHHHHHHHHHT------------------S---TTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCCCccch--HhHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 89999999999999999999999999999998765321 335789999999999999999999999999
Q ss_pred HHHHhhhhhccccccCCCCCcchhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhhccCccccccCHHHH
Q 003870 596 DEFMALTENINWTTEDTSQNGNEYMNEVIIYLDTLMSTAQQILPLDALYKVGSGALEHISNSIVSAFLSDSVKRFNANAV 675 (790)
Q Consensus 596 deflel~~~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~~~~LP~~v~~~~~~~a~~his~~ll~~Ll~~~vk~in~~al 675 (790)
||||+ +++|||+|++++++||+||.||+.||+++|+|++.+||++++..+|++||+|||++||++|+|++||+||++||
T Consensus 158 De~le-la~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al 236 (311)
T PF04091_consen 158 DEFLE-LAEYDWTPTEPPGEPSDYINDLIQFLETTFSSTLTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNAL 236 (311)
T ss_dssp HHHHT-T--TT--------S--HHHHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTH
T ss_pred HHHHh-hcccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHH
Confidence 99998 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccCCCcccCCcchHHHhhhHHHHHHHHhhcCCCccccchhhhcccCCCCChhhHHHHHhhhc
Q 003870 676 AIINHDLKKLEDFSDEKFHITGLSEINPEGSFRRCLVEARQLINLLISSQPENFMNPVIREKNYNALDYKKVASICEKFK 755 (790)
Q Consensus 676 ~n~~~Dv~~lE~f~~~~~~~~g~~~~~~~~~L~~~F~ELrQlidLl~s~~~~~y~~~~~R~~kY~rv~~~~~~~lLeK~~ 755 (790)
+||++||+|||+||+++ |++|. +.++|+++|+|||||+|||++|||++|+||.+|++||+||+|++|+.||||||
T Consensus 237 ~~~~~Dv~~lE~f~~~~-~~~~~----~~~~L~~~F~eLrQlvdLl~s~~~~~y~d~~~r~~kY~~v~p~~~~~lLeK~k 311 (311)
T PF04091_consen 237 QNFDLDVKYLESFADSL-PVPGN----NIPSLRETFAELRQLVDLLLSDDWEEYLDPGIRERKYSRVKPEKAIKLLEKLK 311 (311)
T ss_dssp HHHHHHHHHHHHHHTT--SSSS------SSTTGGGGHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHHHHHHHHHhC-cCccc----ccccHHHHHHHHHHHHHHHhcCCHHHHhCccccccccCCCCHHHHHHHHHhcC
Confidence 99999999999999998 88876 68999999999999999999999999999999999999999999999999986
No 3
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=99.45 E-value=2.6e-07 Score=112.33 Aligned_cols=599 Identities=14% Similarity=0.190 Sum_probs=361.5
Q ss_pred hHHHHHHHHHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003870 47 EALLHQLKSVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVGSALLIKLEELLESYAIKKN 126 (790)
Q Consensus 47 ~~~l~~L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~~kk~~L~~~r~v~~n 126 (790)
..+.-+|+-++.+-...||+.+..--+..=..+.++..||.++..|++++..+.+.+++.-.+=....+.|.+..+|+.+
T Consensus 37 s~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~r 116 (766)
T PF10191_consen 37 SSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDTAQSMAQLAELDSVKSR 116 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHH
Confidence 35677899999999999999998888777899999999999999999999999999987766666777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHhhHHHHHHh--hcCCCCchHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 003870 127 VTGAIKMGKICVQVLDLCVKCNNHITDGQFYPALKTIDLIEKN--YLQIIPVKALKMVIEKTIPVIKTHIEKKVTSQFNE 204 (790)
Q Consensus 127 I~eai~~L~~cl~VLel~~k~~e~i~ekkyy~ALktLd~Le~~--~L~~v~~~~f~~~i~~sIP~lr~~Ik~~~~~~l~~ 204 (790)
+..|.++|+..-..-.+...|.+.+..+.|-.+=..|.++.+. -|..+|.|.-.+.. +-.++..++..
T Consensus 117 m~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~~l~~~pd~~~r~~~---le~l~nrLEa~------- 186 (766)
T PF10191_consen 117 MEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQRSLAVLQDVPDYEERRQQ---LEALKNRLEAL------- 186 (766)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCCchhHHHHH---HHHHHHHHHHH-------
Confidence 9999999999999999999999999999888877777777663 24455555443311 11222222211
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhccCCCCCcccccccCCcCcccccccCcchHHHHHHHHHhc
Q 003870 205 WLVHVRSSAKDIGQTAIGRAASARQRDEEMLDRQRKAEEQNLSGFGDFSFTLEVEDIDEDSVLKFDLTPLYRAYHIHTCL 284 (790)
Q Consensus 205 WL~~IR~~s~~IG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~e~~~~~iDf~Ply~cihI~~~L 284 (790)
.++.+.+ |+. .=|....-++..||..+
T Consensus 187 -------vsp~Lv~-al~---------------------------------------------~~~~~~~~~~~~if~~i 213 (766)
T PF10191_consen 187 -------VSPQLVQ-ALN---------------------------------------------SRDVDAAKEYVKIFSSI 213 (766)
T ss_pred -------hhHHHHH-HHH---------------------------------------------hcCHHHHHHHHHHHHHc
Confidence 1222211 111 01235666677899999
Q ss_pred CChhHHHHHHHHHhHhhhhccc----cCCCccchHHHHHHHHHHHhhHHhhhHHHHhhhCCCCChhhHHHHHHHHHHHHH
Q 003870 285 GIPSQFREYYYRNRLLQLTSDL----QISSVQPFVESYQTFLAQIAGYFIVEDRVLRTAGGLLLPDQLETMWETAVAKIT 360 (790)
Q Consensus 285 g~~e~F~~yY~~~Rr~Q~~l~l----~~~~~~~~~~~l~~yl~~I~GFFvvE~~vl~tt~~l~s~~~vdelW~~~~~kl~ 360 (790)
|..++|++||.+.|+.++...- ......+|.+.|..|+.++++..-=|-.-..+.++=-.. -+-.++-..+..+.
T Consensus 214 ~R~~~l~~~Y~~~r~~~l~~~W~~~~~~~~~~~~~~~L~~fyd~ll~~l~~E~~w~~~vF~~~~~-~~~~ll~~~L~~L~ 292 (766)
T PF10191_consen 214 GREPQLEQYYCKCRKAPLQRLWQEYCQSDQSQSFAEWLPSFYDELLSLLHQELKWCSQVFPDESP-VLPKLLAETLSALQ 292 (766)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHhcC
Confidence 9999999999999998763221 111124677889999999999876666655444432222 34455555555555
Q ss_pred H----HHHHHhccCCC---hHHHHHHHHHHHHHHHHhhh----c--CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003870 361 S----VLEEQFSHMDS---ATHLLLVKDYVTLLGATLRQ----Y--GYEVGPVLEVLDKSQDKYHELLLEECQQQITTVL 427 (790)
Q Consensus 361 ~----~l~~~~~~~~~---~~~ll~iK~~i~lf~~tl~~----y--gy~v~~L~~~L~~l~d~Y~elL~~~~~~~f~~il 427 (790)
| .+...+..+.. ...++.+.+...-|+..++. . ..+...+.+++..+++-|.....+ |. ++++..
T Consensus 293 PS~~~~l~~al~~~~~~~~L~~L~~l~~~t~~Fa~~l~~~l~~~~~~~~l~~~~~l~~al~~PF~~~q~~-Yg-~lE~~~ 370 (766)
T PF10191_consen 293 PSFPSRLSSALKRAGPETKLETLIELYQATEHFARNLEHLLSSLPGESNLSKVEELLQALFEPFKPYQQR-YG-ELERRF 370 (766)
T ss_pred ccHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHH-HH-HHHHHH
Confidence 4 45555544433 37788888888888885554 2 234445666777777766665332 21 111111
Q ss_pred hcCCCcccccCChHHHHhhhhhccCCCCCCCCCCCccccCCCchHHHHHHHHHHHHHHHHHhccCC----cccHHHHHHH
Q 003870 428 TNDTYEQMLMKKDTDYENNVLLFHLQSSDIMPAFPYIAPFSSMVPDACRIVRSFIKGSVDYLSYGM----HANYFDVLRK 503 (790)
Q Consensus 428 ~~D~y~Pm~V~~~eey~~~v~~~~~~~~~~~~~fP~~lPFS~~vP~~c~~ir~fi~~~~~f~~~~~----~~eide~v~k 503 (790)
-...-.++..+..+--+ .+=..+..+|++......=+..|..|-.+.. ..-++..+.+
T Consensus 371 L~~~L~~l~~~~~~~~d------------------~v~~L~~s~~k~f~lae~Av~RC~~fT~G~~~~~Ll~Ald~~~~~ 432 (766)
T PF10191_consen 371 LSAQLSALDLESAELSD------------------AVRRLEESIPKLFGLAEEAVDRCIAFTGGYGVPGLLKALDSIFSQ 432 (766)
T ss_pred HHHHHHhcccCCCcHHH------------------HHHHHHHhHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH
Confidence 11111122221110000 0113466788888889999999999986433 2346667777
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCc--------C---hHHHHHHHHhHHHHHHHHHHHHHHHH-HH------c-CC--Ccc-
Q 003870 504 YLDKLLIDVLNEVILNTITGGSI--------G---VSQAMQIAANITFLERACDYFLRHAA-QL------C-GI--PVR- 561 (790)
Q Consensus 504 s~d~lL~~~v~~~L~~~i~~~~~--------~---l~qi~QI~iN~~~le~ac~~~e~~~~-~l------~-~~--~~~- 561 (790)
+++. ++.++ ..|+........ + +.-.+|++.-+.-|...|..||..+. ++ + +. +..
T Consensus 433 y~~~-~~~~l-~~lr~~~~~~~~~~~~~~~eDWs~fQ~aL~LL~~~g~l~~rl~~fE~~l~~~l~~~~~~l~~~~~~~~~ 510 (766)
T PF10191_consen 433 YLSS-LTATL-RSLRKSCGLDSTATSSASSEDWSLFQNALQLLQTCGELLSRLSQFEQSLRSRLLELASKLLSSSFSSSS 510 (766)
T ss_pred HHHH-HHHHH-HHHHHHcCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCcc
Confidence 7776 45554 335544333211 0 12235666666677777777774321 11 1 00 000
Q ss_pred ------------ccCCc--------------------------------cchh-hHHHHHHHHHHHHHHHHHHHHHhhHH
Q 003870 562 ------------SVQKP--------------------------------QATL-MAKVVLKTSRDAAYITLLNLVNTKLD 596 (790)
Q Consensus 562 ------------~~~~~--------------------------------~~~l-~a~~~f~~~r~~Ae~~I~~lv~~KId 596 (790)
....+ ..-| .+...+...-+.+.+-+++.+-+.|.
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~~~~~l~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~v~d~l~~~i~ 590 (766)
T PF10191_consen 511 DTGEAASGDTRSSSPNPWKGYNYLAASRLAELPNKAEDLQSLSEQASPSFSLLPEARAAVSRLNQQAQDLVFDVLFSPIR 590 (766)
T ss_pred ccccccccccCcccccchHHHHhhccccHHHHHHHHHHHHHhhhccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0001 12222333335556666676666666
Q ss_pred HHHhhhhhc-cccccC--------CC---CCcchhHHHHHHHHHHHHHHHh----------------hhCCH--------
Q 003870 597 EFMALTENI-NWTTED--------TS---QNGNEYMNEVIIYLDTLMSTAQ----------------QILPL-------- 640 (790)
Q Consensus 597 eflel~~~y-DW~~~~--------~~---~~ps~yi~dli~fL~~~f~s~~----------------~~LP~-------- 640 (790)
.-|..+... -|.... -| -.|.+||..+..||-++-.-+- .++|+
T Consensus 591 ~~L~~vp~~~~W~~~~~~~~~~~~LP~FS~~P~eyIT~IGeyLLtLPq~LEp~~~~~~~al~~Al~~~~~~~~~~~~~~~ 670 (766)
T PF10191_consen 591 QQLKSVPSLPSWSSAGVGETSTLDLPSFSLSPQEYITQIGEYLLTLPQQLEPFAESDNSALAFALHAGKLPYPPESDEEA 670 (766)
T ss_pred HHHhcCCcCcccccCCccccccCCCCccccChHHHHHHHHHHHHhhHHhhhhhhcCcchHHHHHHHhcCCCCCCCcccCC
Confidence 655543333 476611 12 2789999999999976644211 01221
Q ss_pred ----HHHHHHHHHHHHHHHHHHHhhccCccccccCHHHHHHHHHHHHHHHHhhhhhcccCCCcccCCcchHHHhhhHHHH
Q 003870 641 ----DALYKVGSGALEHISNSIVSAFLSDSVKRFNANAVAIINHDLKKLEDFSDEKFHITGLSEINPEGSFRRCLVEARQ 716 (790)
Q Consensus 641 ----~v~~~~~~~a~~his~~ll~~Ll~~~vk~in~~al~n~~~Dv~~lE~f~~~~~~~~g~~~~~~~~~L~~~F~ELrQ 716 (790)
.+...............+++-+ -.++.+|..|-.|+..||.||-.-.... |++ ..+ .|.+
T Consensus 671 ~~~~~~~~~wl~~va~~~~~~~~~~i--~~i~~l~~~~~~QL~~Di~Yl~nVl~aL----g~~---~~~-------~L~~ 734 (766)
T PF10191_consen 671 EEADDFADEWLGKVARATCALYLEQI--LEIPELSESGAKQLATDIDYLSNVLSAL----GLS---PPP-------NLQQ 734 (766)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHH--hccccCCHHHHHHHHHHHHHHHHHHHHh----CCC---CCH-------HHHH
Confidence 1122222222333333333333 2567899999999999999999999987 432 111 2444
Q ss_pred HHHHhhcCCCccccchhhhcccCCCCChhhHHHHHhhhc
Q 003870 717 LINLLISSQPENFMNPVIREKNYNALDYKKVASICEKFK 755 (790)
Q Consensus 717 lidLl~s~~~~~y~~~~~R~~kY~rv~~~~~~~lLeK~~ 755 (790)
+..|+.. .+++|..-.. .+ |...+..+-|||
T Consensus 735 ~~~ll~~-~~~~~~~~~~------~~-~~~~~~~v~~mr 765 (766)
T PF10191_consen 735 LVTLLKA-PPDQYAQVAK------GL-PRRLVAAVAKMR 765 (766)
T ss_pred HHHHHcC-CHHHHHHHHh------cC-CHHHHHHHHHHh
Confidence 4444443 5677765443 23 555555556654
No 4
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=98.39 E-value=0.0049 Score=73.64 Aligned_cols=364 Identities=12% Similarity=0.182 Sum_probs=202.7
Q ss_pred ChhHHHHHHHHHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHH-HHH-HHHHHHHHHHHHHHHHH
Q 003870 45 RPEALLHQLKSVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYR-LQE-VGSALLIKLEELLESYA 122 (790)
Q Consensus 45 ~~~~~l~~L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~-Lq~-s~~~L~~kk~~L~~~r~ 122 (790)
+...-+..|...+.+-..||..+-+.+|.+|..++.+...+-.++..|..+|.++-+. +.. ....+.....++-..++
T Consensus 11 dl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~ 90 (593)
T PF06248_consen 11 DLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELKR 90 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999999999999999999999999998444322 211 22344444444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHhhHHHHHHhhcCCCCchHHHHHHHhhchhHHHHHHHHHHHHH
Q 003870 123 IKKNVTGAIKMGKICVQVLDLCVKCNNHITDGQFYPALKTIDLIEKNYLQIIPVKALKMVIEKTIPVIKTHIEKKVTSQF 202 (790)
Q Consensus 123 v~~nI~eai~~L~~cl~VLel~~k~~e~i~ekkyy~ALktLd~Le~~~L~~v~~~~f~~~i~~sIP~lr~~Ik~~~~~~l 202 (790)
--+.....+++|..-..+=+....+++.+.+|+|-.|...|++++..- ..++...+.+ -.++..|
T Consensus 91 eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L-~~l~~~~~~~--------------~~i~~~L 155 (593)
T PF06248_consen 91 ELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLL-DDLKSSKFEE--------------LKILKLL 155 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HhcCcCcccc--------------cHHHHHH
Confidence 555556666666666777777788889999999999999999997632 3332222211 2233333
Q ss_pred HHHHHHHHHH-hHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhccCCCCC-cccccccCCcCcccccccCcchHHHHHHH
Q 003870 203 NEWLVHVRSS-AKDIGQTAIGRAASARQRDEEMLDRQRKAEEQNLSGFGD-FSFTLEVEDIDEDSVLKFDLTPLYRAYHI 280 (790)
Q Consensus 203 ~~WL~~IR~~-s~~IG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~e~~~e~~~~~iDf~Ply~cihI 280 (790)
+..+...|+. ... ....|+....|+..... ...+... ....+.+.. ....-++..+..++++
T Consensus 156 k~e~~~lr~~L~~~-----------L~~~w~~lv~~~~~~~k-~~~~~~~~~~v~l~vs~----~~~~~~L~~vl~AL~~ 219 (593)
T PF06248_consen 156 KDEYSELRENLQYQ-----------LSEEWERLVQWDSPSSK-QLSSPESTLKVTLHVSK----SESQESLQDVLQALEI 219 (593)
T ss_pred HHHHHHHHHHHHHH-----------HHHHHHhheeecCCCcc-cccccccceEEEEEeec----CcccchHHHHHHHHHH
Confidence 3333333332 222 22344444444321110 0000000 001111111 1111126777777765
Q ss_pred HHhcCC-hhHHHHHHHH---HhHhhh-hc----------------cccCCCccchHHHHHHHHHHHhhHHhh-hHHHH--
Q 003870 281 HTCLGI-PSQFREYYYR---NRLLQL-TS----------------DLQISSVQPFVESYQTFLAQIAGYFIV-EDRVL-- 336 (790)
Q Consensus 281 ~~~Lg~-~e~F~~yY~~---~Rr~Q~-~l----------------~l~~~~~~~~~~~l~~yl~~I~GFFvv-E~~vl-- 336 (790)
-..|+. .+.|...--+ +...+. .. ...+.....-..++.+.|..|.-+|-. -.++.
T Consensus 220 lg~L~~~l~~~~~~Ll~~ii~PlI~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~V~~~l~~vf~fL~~~L~~~ 299 (593)
T PF06248_consen 220 LGILDYKLKKFSKFLLEHIIKPLISHPSSIVSVEESEDGSVEITLSYEPDSSKDKRPSPKEVFSNLLLVFEFLHQHLLSL 299 (593)
T ss_pred hCchhHHHHHHHHHHHHHHHHHHhcCCCCcccccccCCCcceEEEEeecccccccCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 544432 2333222222 111110 00 000000000001233333333333311 11111
Q ss_pred hhhCCCCChhhHHHHHHHHHHHHHHH-HHHHhc-cCCChHHHHHHHHHHHHHHHHhhhcCC---CchhHHHHHHHHHHHH
Q 003870 337 RTAGGLLLPDQLETMWETAVAKITSV-LEEQFS-HMDSATHLLLVKDYVTLLGATLRQYGY---EVGPVLEVLDKSQDKY 411 (790)
Q Consensus 337 ~tt~~l~s~~~vdelW~~~~~kl~~~-l~~~~~-~~~~~~~ll~iK~~i~lf~~tl~~ygy---~v~~L~~~L~~l~d~Y 411 (790)
..++.=+...=-+.+|..++..++.- |...+= ...+.+.+..+-+.+.=|..+|...|| +..+|.+.....-.+|
T Consensus 300 ~~~~~~l~~~~g~~i~~~ls~~lI~~~L~~aiP~~~~~l~~f~~v~~~~~~Fe~~L~~lgf~~~~~~~L~~~~~~i~~~f 379 (593)
T PF06248_consen 300 PSSDSSLSESFGDHIWPRLSELLISNCLSPAIPTSASELQEFEEVLESVEEFEEALKELGFLSSDNTELSEFVDNIETHF 379 (593)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhCcCcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCchHHHHHHHhHHHHH
Confidence 00000011223567888877776642 333332 122235577788889999999999999 3467777777777777
Q ss_pred HHHHHHHHHHHHHhhhhcCCCcccccCC
Q 003870 412 HELLLEECQQQITTVLTNDTYEQMLMKK 439 (790)
Q Consensus 412 ~elL~~~~~~~f~~il~~D~y~Pm~V~~ 439 (790)
..--.++.-..-++++..|.|.-+.|..
T Consensus 380 ~~kr~~~iL~~AR~lm~~~~~~~v~V~~ 407 (593)
T PF06248_consen 380 ANKRCQDILDKARDLMLRDLHDTVKVGP 407 (593)
T ss_pred HHHHHHHHHHHHHHHHhcccccceEecc
Confidence 7777777777889999999999998853
No 5
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=98.32 E-value=0.00054 Score=79.98 Aligned_cols=335 Identities=13% Similarity=0.164 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHHHHHhc-----cCCChHHHHHHHHHHHHHHHHhhh-cCCCc-h--hHHHHH--HHHHHHHHHHHHHHHH
Q 003870 352 WETAVAKITSVLEEQFS-----HMDSATHLLLVKDYVTLLGATLRQ-YGYEV-G--PVLEVL--DKSQDKYHELLLEECQ 420 (790)
Q Consensus 352 W~~~~~kl~~~l~~~~~-----~~~~~~~ll~iK~~i~lf~~tl~~-ygy~v-~--~L~~~L--~~l~d~Y~elL~~~~~ 420 (790)
+...+..+.+.+++.+. ...++..+..+-+.++.|-..|++ |+|+. . .-.++| ...+++..++=.+...
T Consensus 67 ~~~fi~~ll~~~~~Kl~~~l~~~~~~~~~l~HlI~e~~~FD~~L~~~~~y~~d~~~~~~~vL~~~~~~~~Wl~~E~~~a~ 146 (494)
T PF04437_consen 67 REEFIRGLLPPVREKLRSDLPELLDDPSLLSHLIDEILSFDKELRSLYGYPGDWQGSTLDVLCQPDWFDRWLNAEKEFAL 146 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--TTS-HHHHHHHHHHHHHHHHHHHHTS---S------CGGGS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHcCCCCccchhHHHHhcchHHHHHHHHHHHHHHH
Confidence 33344444444444443 346789999999999999999965 89998 1 224444 3777888887778888
Q ss_pred HHHHhhhhcCCCcccccCChHHHHhhhhhccCCCCCCCCCCCccccCCCchHHHHHHHHHHHHHHHHHhcc---CCc-cc
Q 003870 421 QQITTVLTNDTYEQMLMKKDTDYENNVLLFHLQSSDIMPAFPYIAPFSSMVPDACRIVRSFIKGSVDYLSY---GMH-AN 496 (790)
Q Consensus 421 ~~f~~il~~D~y~Pm~V~~~eey~~~v~~~~~~~~~~~~~fP~~lPFS~~vP~~c~~ir~fi~~~~~f~~~---~~~-~e 496 (790)
.+|.+|++.++-=.+..++. ....-..+ .|.|-..+.+.+.......+. ..+ ..
T Consensus 147 ~r~~~i~~s~~aw~~~~~~~----------------~~~~~~~k------~t~~A~~~~~Ll~~it~ry~~L~~~~~rl~ 204 (494)
T PF04437_consen 147 ERFDEIISSPDAWQIDYDDV----------------EADSDELK------PTKSAERFVKLLESITDRYRPLPSLSHRLR 204 (494)
T ss_dssp HHHH---------------H----------------TTSSGGGG-------GGHHHHHHHHHHHHHHHHHHHHH---GG-
T ss_pred HHHhhhcccchhhhhhhccc----------------cCCchhhc------chHHHHHHHHHHHHHHHHHhhcCchHHHHH
Confidence 88998888766443333220 00001111 244555666666665544432 111 11
Q ss_pred -HH----HHHHHHHHHHHHHHHHHHH----HHhhhcCCcChHHHHHHHHhHHHHHHHHHHHH---HHHH----HHcCCCc
Q 003870 497 -YF----DVLRKYLDKLLIDVLNEVI----LNTITGGSIGVSQAMQIAANITFLERACDYFL---RHAA----QLCGIPV 560 (790)
Q Consensus 497 -id----e~v~ks~d~lL~~~v~~~L----~~~i~~~~~~l~qi~QI~iN~~~le~ac~~~e---~~~~----~l~~~~~ 560 (790)
+. .++.++.++|....-.-.. .... .+..++.++..+.-++.|++.++..+. .|+. +....+.
T Consensus 205 Fl~~iql~lld~~~~~L~~~~~~~~~~~s~~~~~-~~~~~l~~l~~~lnsa~yi~~~L~eW~e~~~Flq~~~~~~~~~~~ 283 (494)
T PF04437_consen 205 FLIDIQLPLLDDYHDRLSQSLEAFESSTSTLASL-SGDSGLERLCKILNSANYIENVLREWSEDVFFLQMRAKESESSNN 283 (494)
T ss_dssp -GHHHHHHHHHHTHHHHHHHHHHHHHT----SCE-EHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhc-cCCchHHHHHHHHHHHHHHHHHHHHhcCCCeeehhhccchhhccc
Confidence 21 3455555555432111111 1111 122367889999999999999997776 3331 0000000
Q ss_pred ---cccC----Cccchh-hHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhcc---ccccCCC-----CCcchhHHHHH
Q 003870 561 ---RSVQ----KPQATL-MAKVVLKTSRDAAYITLLNLVNTKLDEFMALTENIN---WTTEDTS-----QNGNEYMNEVI 624 (790)
Q Consensus 561 ---~~~~----~~~~~l-~a~~~f~~~r~~Ae~~I~~lv~~KIdeflel~~~yD---W~~~~~~-----~~ps~yi~dli 624 (790)
.... ...+-+ ...+.|+..++.+++.|...+..-+.+-+- +|.. |...+.. ..||..+...+
T Consensus 284 ~~~~~~~~~~~~~~siFde~i~~y~~l~~~~~~~iv~~v~~~~k~~lk--~Y~k~~~W~~~~~~~~~~~~~~S~el~~~L 361 (494)
T PF04437_consen 284 SLEDIANETSSEEGSIFDETISAYEKLRKRMLESIVDRVVKEFKASLK--AYFKRSQWSSIESPSDSSPLSPSPELVPAL 361 (494)
T ss_dssp HHHHHHHHHTT--S-TTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTH--HHHT--GGGT-------------GGGHHHH
T ss_pred ccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCccCCCCcccccccccCCCCHHHHHHH
Confidence 0000 001122 356678888999999998888888888765 4554 9655444 69999999999
Q ss_pred HHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhhccCccccccCHHHHHHHHHHHHHHHHhhhhhcccCCCcccCCc
Q 003870 625 IYLDTLMSTAQQILPLDALYKVGSGALEHISNSIVSAFLSDSVKRFNANAVAIINHDLKKLEDFSDEKFHITGLSEINPE 704 (790)
Q Consensus 625 ~fL~~~f~s~~~~LP~~v~~~~~~~a~~his~~ll~~Ll~~~vk~in~~al~n~~~Dv~~lE~f~~~~~~~~g~~~~~~~ 704 (790)
..|...+..+...||+.....++...+.-|.+.|++-++..+ ++|.+|..||..|+..|-.....- . +.
T Consensus 362 ~~L~~~L~~L~~~L~~~~f~~i~r~ia~~l~~~l~~~Il~~n--~Fs~~Ga~Ql~~D~~~L~~~~~~~--~-------~~ 430 (494)
T PF04437_consen 362 SLLRSRLSFLERSLPPADFRRIWRRIASKLDDYLWESILMSN--KFSRAGAAQLQFDMRALFSVFSQY--T-------PR 430 (494)
T ss_dssp HHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHTTTTTS---B-HHHHHHHHHHHHHHHTTS--T--T-------SG
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhhhcC--eeChhHHHHHHHHHHHHHHHHHhh--c-------cC
Confidence 999999999999999999999999999999999998443233 999999999999998875555441 1 11
Q ss_pred chHHHhhhHHHHHHHHhhcC
Q 003870 705 GSFRRCLVEARQLINLLISS 724 (790)
Q Consensus 705 ~~L~~~F~ELrQlidLl~s~ 724 (790)
-...|..+++.+.||.-+
T Consensus 431 --p~~~f~~l~E~~~LL~L~ 448 (494)
T PF04437_consen 431 --PEAFFKRLREACKLLNLP 448 (494)
T ss_dssp --G-HHHHHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHHHHcCCC
Confidence 236789999999998644
No 6
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=98.32 E-value=4.9e-05 Score=82.59 Aligned_cols=156 Identities=13% Similarity=0.121 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003870 48 ALLHQLKSVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVGSALLIKLEELLESYAIKKNV 127 (790)
Q Consensus 48 ~~l~~L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~~kk~~L~~~r~v~~nI 127 (790)
...++|..+..--+..|-+....||..|.+++.++..++.+...--..+..+-..|+.+-+.+....-.++..++-++|+
T Consensus 35 ~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l 114 (291)
T PF10475_consen 35 ELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNL 114 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45677888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHhhHHHHHHhhcCCCCchHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 003870 128 TGAIKMGKICVQVLDLCVKCNNHITDGQFYPALKTIDLIEKNYLQIIPVKALKMVIEKTIPVIKTHIEKKVTSQFNE 204 (790)
Q Consensus 128 ~eai~~L~~cl~VLel~~k~~e~i~ekkyy~ALktLd~Le~~~L~~v~~~~f~~~i~~sIP~lr~~Ik~~~~~~l~~ 204 (790)
.+..+.|+....|.+.-.++++++.+|.|..||..+.+.++. +..+..|.=.+.|...+..+...|.+..-++|.+
T Consensus 115 ~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~ 190 (291)
T PF10475_consen 115 KKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQL-LEELKGYSCVRHLSSQLQETLELIEEQLDSDLSK 190 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHhcccchHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887 4666666544455555555555555444444433
No 7
>PF15469 Sec5: Exocyst complex component Sec5
Probab=98.13 E-value=9.3e-05 Score=74.79 Aligned_cols=145 Identities=12% Similarity=0.164 Sum_probs=118.6
Q ss_pred HHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHH------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003870 62 AEIEELCKTHYEEFILAVDELRGVLVDAEELKSD------LSSDNYRLQEVGSALLIKLEELLESYAIKKNVTGAIKMGK 135 (790)
Q Consensus 62 ~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~------l~~~n~~Lq~s~~~L~~kk~~L~~~r~v~~nI~eai~~L~ 135 (790)
.++..++..||..||+|.+.|.+|+++...-+.+ +..+...++.+....-..-+.+++.|.-..++..|+..|+
T Consensus 2 ~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~ 81 (182)
T PF15469_consen 2 EDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQ 81 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999877765 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccHHHhhHHHHHHhhcCCCCchHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q 003870 136 ICVQVLDLCVKCNNHITDGQFYPALKTIDLIEKNYLQIIPVKALKMVIEKTIPVIKTHIEKKVTSQFNEWL 206 (790)
Q Consensus 136 ~cl~VLel~~k~~e~i~ekkyy~ALktLd~Le~~~L~~v~~~~f~~~i~~sIP~lr~~Ik~~~~~~l~~WL 206 (790)
.|-.++++-.++.+.|++|.|..|.+--......+-+........+.|...|..+-..+++.....|.+|-
T Consensus 82 r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~ 152 (182)
T PF15469_consen 82 RNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPP 152 (182)
T ss_pred HHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999988776665544222112223333666666666666666655555554
No 8
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=97.99 E-value=0.00015 Score=70.60 Aligned_cols=105 Identities=17% Similarity=0.213 Sum_probs=95.5
Q ss_pred ChhHHHHHHHHHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003870 45 RPEALLHQLKSVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVGSALLIKLEELLESYAIK 124 (790)
Q Consensus 45 ~~~~~l~~L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~~kk~~L~~~r~v~ 124 (790)
+.+.-+..+...-+.-+..++.+++.|||+|..||.....|.....+-++++.++.+.|+++...|..++++|.+...-.
T Consensus 37 g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s 116 (142)
T PF04048_consen 37 GRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCRREELKELWQRS 116 (142)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003870 125 KNVTGAIKMGKICVQVLDLCVKCNN 149 (790)
Q Consensus 125 ~nI~eai~~L~~cl~VLel~~k~~e 149 (790)
..-.+.++.|..+-.|...=.++..
T Consensus 117 ~~~~~mi~iL~~Ie~l~~vP~kie~ 141 (142)
T PF04048_consen 117 QEYKEMIEILDQIEELRQVPDKIES 141 (142)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 8888888888888777776666543
No 9
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=97.89 E-value=0.00047 Score=66.22 Aligned_cols=105 Identities=10% Similarity=0.116 Sum_probs=100.1
Q ss_pred cCChhHHHHHHHHHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 003870 43 TGRPEALLHQLKSVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVGSALLIKLEELLESYA 122 (790)
Q Consensus 43 ~~~~~~~l~~L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~~kk~~L~~~r~ 122 (790)
..+...-+.+|+.=+++-|++|+..+..||.+++..+..+.........++..+..++.+.+.-..++.+.-+.+.....
T Consensus 28 ~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~ 107 (132)
T PF10392_consen 28 ELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTS 107 (132)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003870 123 IKKNVTGAIKMGKICVQVLDLCVKC 147 (790)
Q Consensus 123 v~~nI~eai~~L~~cl~VLel~~k~ 147 (790)
+-+|+.+|.+.|+.|.+.|.++.|+
T Consensus 108 ~L~rl~~t~~LLR~~~r~l~L~~rL 132 (132)
T PF10392_consen 108 QLERLHQTSDLLRSVSRFLQLVRRL 132 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999998874
No 10
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=97.79 E-value=0.2 Score=61.29 Aligned_cols=169 Identities=17% Similarity=0.189 Sum_probs=124.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhh-------ccccccCCC----CCcchhHHHHHHHHHHHHHHHhhhCC
Q 003870 571 MAKVVLKTSRDAAYITLLNLVNTKLDEFMALTEN-------INWTTEDTS----QNGNEYMNEVIIYLDTLMSTAQQILP 639 (790)
Q Consensus 571 ~a~~~f~~~r~~Ae~~I~~lv~~KIdeflel~~~-------yDW~~~~~~----~~ps~yi~dli~fL~~~f~s~~~~LP 639 (790)
.+....+..-+..|..|...++.-||-++.-+.. -|..|.+.. ..|+.....++.||+..+..+...|.
T Consensus 520 ~~~~~k~~~~~~le~~v~~gL~~~i~~l~~~v~~iL~~Qkk~Df~p~~~~~~~~~~~T~ac~~vv~~L~~~~~~~~~~l~ 599 (710)
T PF07393_consen 520 ECIQKKKSFESRLEEKVNAGLNKGIDVLMNWVEFILSEQKKTDFKPKEDDLSLDQQPTPACQEVVEFLERHCSLLKGSLD 599 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccCCCHHHHHHHHHHHHHHHHHHHHcc
Confidence 3555566666777777777777777766653221 377775433 37999999999999999998877788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCccccc--cCHHHHHHHHHHHHHHHHhhhhhcccCCCcccCCcchHHHhhhHHHHH
Q 003870 640 LDALYKVGSGALEHISNSIVSAFLSDSVKR--FNANAVAIINHDLKKLEDFSDEKFHITGLSEINPEGSFRRCLVEARQL 717 (790)
Q Consensus 640 ~~v~~~~~~~a~~his~~ll~~Ll~~~vk~--in~~al~n~~~Dv~~lE~f~~~~~~~~g~~~~~~~~~L~~~F~ELrQl 717 (790)
.+.... -+..|+.+|..+|+ +.+++ ||..|-..+..||.+..+|+.+. +.+.+...|.-|+++
T Consensus 600 ~~nl~~----f~~elg~~l~~~l~-~h~kk~~vs~~Gg~~l~~Dl~~Y~~~~~~~----------~~~~v~~~F~~L~~l 664 (710)
T PF07393_consen 600 GSNLDV----FLQELGERLHRLLL-KHLKKFTVSSTGGLQLIKDLNEYQDFIRSW----------GIPSVDEKFEALKEL 664 (710)
T ss_pred chhHHH----HHHHHHHHHHHHHH-HHHHhCccCchhHHHHHHHHHHHHHHHHHc----------CCchHHHHHHHHHHH
Confidence 776665 56678888888777 56655 78888888999999999999874 466788999999999
Q ss_pred HHHhhcCCCccccchhhhcccCCCCChhhHHHHHhhhcc
Q 003870 718 INLLISSQPENFMNPVIREKNYNALDYKKVASICEKFKD 756 (790)
Q Consensus 718 idLl~s~~~~~y~~~~~R~~kY~rv~~~~~~~lLeK~~~ 756 (790)
.+||.- +|+ =+....++..-++++++.+...+.+-.|
T Consensus 665 ~nl~~v-~~~-~l~~~~~~~~~~~~~~~~i~~fi~~R~D 701 (710)
T PF07393_consen 665 GNLFIV-DPE-NLKELCREGQLGRFSPEEIYEFIQRRSD 701 (710)
T ss_pred Hhheee-cHH-HHHHHHhhccccCCCHHHHHHHHHHhhh
Confidence 999987 443 3333344433377888888888776443
No 11
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=97.57 E-value=4.1e-05 Score=73.54 Aligned_cols=111 Identities=21% Similarity=0.229 Sum_probs=46.7
Q ss_pred HhcCChhHHHHHHHHHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003870 41 FETGRPEALLHQLKSVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVGSALLIKLEELLES 120 (790)
Q Consensus 41 ~~~~~~~~~l~~L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~~kk~~L~~~ 120 (790)
......+++...|..+.+.-+.++-+++|.+|++|++--..|.++.+...+++..+.++...++++...+....+++-..
T Consensus 23 ~~~~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~ 102 (133)
T PF06148_consen 23 RRYVSLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDK 102 (133)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHHHS-STTHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003870 121 YAIKKNVTGAIKMGKICVQVLDLCVKCNNHI 151 (790)
Q Consensus 121 r~v~~nI~eai~~L~~cl~VLel~~k~~e~i 151 (790)
-..++++.+....++.|+.+-+.+.|+..++
T Consensus 103 l~~~~~l~~~k~~l~~~l~~~~~~~kle~ll 133 (133)
T PF06148_consen 103 LEERKELREEKALLKLLLDISESLEKLEDLL 133 (133)
T ss_dssp HHHHHHHHHHHHT-SSSSHHH----------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccccC
Confidence 9999999999999999999999999988764
No 12
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.82 Score=54.24 Aligned_cols=628 Identities=13% Similarity=0.159 Sum_probs=313.5
Q ss_pred CChhHHHHHHHHHHHhhHHHHHHHhhh-------chhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003870 44 GRPEALLHQLKSVVRKKEAEIEELCKT-------HYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVGSALLIKLEE 116 (790)
Q Consensus 44 ~~~~~~l~~L~~~i~~kd~eIE~iC~~-------~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~~kk~~ 116 (790)
++.+..++.+..--+.-|++++.+-.. +.-..-.+-.-|..|..++.+|++.|...+..-.+ +..|-++
T Consensus 34 ~qi~~~le~~~~ee~~~~~~L~~lL~q~~~ie~~~~~~l~r~~~~L~~v~~da~el~~~i~nt~~lAe~----Vs~kVr~ 109 (773)
T KOG0412|consen 34 SQIDLLLERIAREEARVDKDLEALLSQQQTIEGENMSALTRSAENLLTVEGDAKELTDAIKNTCVLAET----VSGKVRA 109 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 344455555555555555555555433 22334456677888888888888888776543332 3333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHhhHHHHHHhhcCCCCchHHHHHHHhhchhHHHHHHH
Q 003870 117 LLESYAIKKNVTGAIKMGKICVQVLDLCVKCNNHITDGQFYPALKTIDLIEKNYLQIIPVKALKMVIEKTIPVIKTHIEK 196 (790)
Q Consensus 117 L~~~r~v~~nI~eai~~L~~cl~VLel~~k~~e~i~ekkyy~ALktLd~Le~~~L~~v~~~~f~~~i~~sIP~lr~~Ik~ 196 (790)
|=. .+..+.+++.-+......=.+..-++.-|+...|=.|-.-+-..-.. -+.+-.-+|++ .-+|. .+| +
T Consensus 110 lDl---a~~Rv~~clq~v~dvrdlk~C~~gv~~Al~seDyE~AA~~IhRflsl-D~~~i~~~~~~---~~~~t--s~i-~ 179 (773)
T KOG0412|consen 110 LDL---AQNRVNECLQRVDDVRDLKNCIEGVDTALESEDYEKAATHIHRFLSL-DQALIESRFAK---QVVPT--SEI-S 179 (773)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CHHHHhhhhhh---ccCCc--hhh-h
Confidence 221 12223333333322222333344455556666666665544443222 12233334444 33443 445 6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhccCCCCCcccccccCCcCcccccccCcchHHH
Q 003870 197 KVTSQFNEWLVHVRSSAKDIGQTAIGRAASARQRDEEMLDRQRKAEEQNLSGFGDFSFTLEVEDIDEDSVLKFDLTPLYR 276 (790)
Q Consensus 197 ~~~~~l~~WL~~IR~~s~~IG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~e~~~~~iDf~Ply~ 276 (790)
+.+.-|++|-+..+.--. .-+..+ .+ .=|...+-|
T Consensus 180 ~~~~~L~~a~e~L~~l~~----~~f~eA--~r---------------------------------------~~D~~ei~R 214 (773)
T KOG0412|consen 180 DPYETLKEAKERLSKLFK----ERFTEA--VR---------------------------------------KQDLKEITR 214 (773)
T ss_pred hHHHHHHHHHHHHHHHHH----HHHHHH--Hh---------------------------------------cccHHHHHH
Confidence 777778888775543210 000000 00 113445555
Q ss_pred HHHHHHhcCC----hhHHHHHHHHHh--Hhhhhccc------cCCCc-cchHHHHHHHHHHHhhHHhhhHH--HHhhhCC
Q 003870 277 AYHIHTCLGI----PSQFREYYYRNR--LLQLTSDL------QISSV-QPFVESYQTFLAQIAGYFIVEDR--VLRTAGG 341 (790)
Q Consensus 277 cihI~~~Lg~----~e~F~~yY~~~R--r~Q~~l~l------~~~~~-~~~~~~l~~yl~~I~GFFvvE~~--vl~tt~~ 341 (790)
-.-+|--+|+ .+.|..|..+.= +.+.++.. .++.. ..|...|-.+|+.|+- |||.| |+.|-.|
T Consensus 215 ffKmFPliG~~~eGL~~ys~ylc~iIA~kar~~l~n~~~~~~~~~r~qv~fad~Lt~lfe~va~--IIe~n~piie~~YG 292 (773)
T KOG0412|consen 215 FFKMFPLIGEEDEGLQLYSVYLCQIIASKARKNLANVKAGMEDDNRRQVFFADTLTMLFEGVAR--IIEANQPILETYYG 292 (773)
T ss_pred HHHHccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCchhHhHHHHHHHHHHHHHHH--HHHcccHHHHHHhC
Confidence 5556666665 334444444421 12222221 11111 1234556666666664 68888 5777777
Q ss_pred CCChhhHHHHHHHHHHHHHHHH-HHHhccCCChHH-HHHHHHHHHHH-------HHHhhhc--CCCch---hHHHHHHHH
Q 003870 342 LLLPDQLETMWETAVAKITSVL-EEQFSHMDSATH-LLLVKDYVTLL-------GATLRQY--GYEVG---PVLEVLDKS 407 (790)
Q Consensus 342 l~s~~~vdelW~~~~~kl~~~l-~~~~~~~~~~~~-ll~iK~~i~lf-------~~tl~~y--gy~v~---~L~~~L~~l 407 (790)
.-.-.++=+--..=|..-.+.+ ..+.. ...-+. .-.|-+.+..- ....+.- --.+. ...-++...
T Consensus 293 ~~~li~~i~~LQ~ecD~q~s~il~~f~~-~Rri~~~~~~In~~~~~~~~~~~~~~~~ie~~p~p~Eid~ii~Ei~~mn~~ 371 (773)
T KOG0412|consen 293 LKKLIDVIEKLQAECDLQGSLILDEFMD-RRRISHLNSDINESIHRQKNNINKNAEAIEDAPDPREIDAIITEITMMNQR 371 (773)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHhhcccccchhhhccCCChHHHHHHHHHHHHHHHH
Confidence 6553332222222222222211 11111 000000 00011111110 0011100 00011 123455577
Q ss_pred HHHHHHHHHHHHHHH--HHhhhhcCCCcccccCChH------HHHhhh-------------------hhccCCCC---CC
Q 003870 408 QDKYHELLLEECQQQ--ITTVLTNDTYEQMLMKKDT------DYENNV-------------------LLFHLQSS---DI 457 (790)
Q Consensus 408 ~d~Y~elL~~~~~~~--f~~il~~D~y~Pm~V~~~e------ey~~~v-------------------~~~~~~~~---~~ 457 (790)
.+=|.....+++... +....++++ +..+++ -+++.. ..|++-.. .+
T Consensus 372 ~emY~rF~~~ki~~~~~v~~~s~~~~----~~~d~e~~~~~~~~~~f~n~s~~~~~mQel~~~y~~LE~yfm~esv~kAi 447 (773)
T KOG0412|consen 372 SEMYSRFMSRKIGSNEVVESPSQDGD----TSEDPEVRQELKCMKKFLNNSRVLTKMQELIRNYLLLEEYFMLESVQKAI 447 (773)
T ss_pred HHHHHHHHHHHHhhhhhhhccCCCCC----cccCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888988888888877 664334333 222322 122111 12222110 00
Q ss_pred -CCCCC-ccccCCCchHHHHHHHHHHHHHHHHHhcc-CCcccHHHHHHHHHHH----HHHHHH----------HHHHHHh
Q 003870 458 -MPAFP-YIAPFSSMVPDACRIVRSFIKGSVDYLSY-GMHANYFDVLRKYLDK----LLIDVL----------NEVILNT 520 (790)
Q Consensus 458 -~~~fP-~~lPFS~~vP~~c~~ir~fi~~~~~f~~~-~~~~eide~v~ks~d~----lL~~~v----------~~~L~~~ 520 (790)
...+- ..-|-|+||-++.-.+|+=|...+.=.+. +...-+++ +...+|. +|...+ ++.+++.
T Consensus 448 ~ld~ye~~~~~~SSmVDDV~yivrk~irRA~~T~si~~~~a~iN~-~~~~l~ndf~~~L~~kLrs~~~~~~sa~N~i~s~ 526 (773)
T KOG0412|consen 448 KLDEYEDAGQLTSSMVDDVFYIVRKCIRRALSTSSIDSLCAFINE-ATALLDNDFLVALQSKLRSIQGGAASALNIIQSS 526 (773)
T ss_pred cccccccCCcchhhhhhhHHHHHHHHHHHHHhcccHHHHHHHHHH-HHHHhcchHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 01222 44578999999999998876665321110 00011222 2222222 222211 2333333
Q ss_pred hhcCC----cChHHHHHHHHhHHHHHHHHHHHHHHH----HHHcCCCccccCC--cc---chh-hHHHHHHHHHHHHHHH
Q 003870 521 ITGGS----IGVSQAMQIAANITFLERACDYFLRHA----AQLCGIPVRSVQK--PQ---ATL-MAKVVLKTSRDAAYIT 586 (790)
Q Consensus 521 i~~~~----~~l~qi~QI~iN~~~le~ac~~~e~~~----~~l~~~~~~~~~~--~~---~~l-~a~~~f~~~r~~Ae~~ 586 (790)
+.... -.-.+..++++-+.....+|.|+.... +...|+-.....+ .. +.+ .-...|++.-+.+-+.
T Consensus 527 lq~~k~~~~d~d~~~~~fl~~LNn~~ls~eyi~~L~~~le~~~~~vf~~~~d~~~l~~~l~~l~~l~~~f~~L~k~g~~~ 606 (773)
T KOG0412|consen 527 LQAGKAEDEDADLAKENFLTALNNADLSKEYIHTLKKTLESDCTEVFPQNFDRAKLKSCLSNLEALSLKFKDLLKWGMEQ 606 (773)
T ss_pred HHHHhccCcchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32210 123477888888888888888888432 2233331110000 00 011 1345577777777776
Q ss_pred HHHH-----HHhhHHHHHhhhhhcccccc--CCCCCcchhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHH
Q 003870 587 LLNL-----VNTKLDEFMALTENINWTTE--DTSQNGNEYMNEVIIYLDTLMSTAQQILPLDALYKVGSGALEHISNSIV 659 (790)
Q Consensus 587 I~~l-----v~~KIdeflel~~~yDW~~~--~~~~~ps~yi~dli~fL~~~f~s~~~~LP~~v~~~~~~~a~~his~~ll 659 (790)
+|.- |+.=||.|.+. .|.-+-+ +......+|+..++.=++..+..+-..|-+.....+-.-+++.|+..|-
T Consensus 607 Lf~~~lkpRi~~~id~f~~i--s~~ls~edy~~~ea~d~~Vq~fl~~v~~l~~~~k~~ltp~nY~sLlsl~~~~ia~~LE 684 (773)
T KOG0412|consen 607 LFSTVLKPRIRPWIDTFVNI--SYNLSEEDYAAYEANDPWVQQFLSSVEQLLAELKNSLTPENYDSLLSLIVDEIATQLE 684 (773)
T ss_pred HHHHHhHHhHhhhhhhhhhh--hccccHHHHhhhccCChHHHHHHHHHHHHHHhhhcccChhhHHHHHHHHHHHHHHHHH
Confidence 6643 44555665541 2222222 2233557788877777776666555435555555555558888888887
Q ss_pred hhccCccccccCHHHHHHHHHHHHHHHHhhhhhcccCCCcccCCcchHHHhhhHHHHHHHHhhcCCCcc---ccchhhhc
Q 003870 660 SAFLSDSVKRFNANAVAIINHDLKKLEDFSDEKFHITGLSEINPEGSFRRCLVEARQLINLLISSQPEN---FMNPVIRE 736 (790)
Q Consensus 660 ~~Ll~~~vk~in~~al~n~~~Dv~~lE~f~~~~~~~~g~~~~~~~~~L~~~F~ELrQlidLl~s~~~~~---y~~~~~R~ 736 (790)
..+. -.++|.-|..+++.|+..|-++... . ..-++++-|.-|.|++-||--++..+ |.+|..-+
T Consensus 685 ~~i~---k~~FNrlG~lqLDre~r~lis~lt~------~----t~~~lRdKf~RLtQIatLLnle~~se~le~w~~~~g~ 751 (773)
T KOG0412|consen 685 QIIW---KIQFNRLGGLQLDRELRALISYLTG------V----TQWNLRDKFARLTQIATLLNLEKDSEILEYWGPNSGP 751 (773)
T ss_pred HHHH---HhHHHhhcchHhhHHHHHHHHHhhc------c----cchhHHHHHHHHHHHHHHHcccccchHHHhcCCCCCC
Confidence 6553 4679999999999999988776653 2 35789999999999999997776554 66777444
Q ss_pred ccCCCCChhhHHHHHhhh
Q 003870 737 KNYNALDYKKVASICEKF 754 (790)
Q Consensus 737 ~kY~rv~~~~~~~lLeK~ 754 (790)
-.+- ++|..+..+|++-
T Consensus 752 ~twr-Lt~~EVr~vl~lr 768 (773)
T KOG0412|consen 752 LTWR-LTPAEVRKVLALR 768 (773)
T ss_pred ceEE-eCHHHHHHHHHhh
Confidence 5555 9999999998863
No 13
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.037 Score=66.23 Aligned_cols=141 Identities=16% Similarity=0.218 Sum_probs=110.3
Q ss_pred hhHHHHHHHhcCCh---hHHHHHHHHHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHH
Q 003870 33 LGPIVRHAFETGRP---EALLHQLKSVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVGSA 109 (790)
Q Consensus 33 l~piik~~~~~~~~---~~~l~~L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~~ 109 (790)
++.+||+..-+.+. +.=.+.|+.--++-++.+.++-+.|+|+|..+|....+|.++..+=+++|..+-+.|.++-+-
T Consensus 32 lInvi~nL~~Se~~e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rerI~~vK~~L~~~k~l 111 (982)
T KOG3691|consen 32 LINVIRNLVGSEDTEPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRERIHNVKNNLEACKEL 111 (982)
T ss_pred hhhHHHhhccCCcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466666655432 223455777778889999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHhhH----HHHHHhhcCCC
Q 003870 110 LLIKLEELLESYAIKKNVTGAIKMGKICVQVLDLCVKCNNHITDGQFYPALKTI----DLIEKNYLQII 174 (790)
Q Consensus 110 L~~kk~~L~~~r~v~~nI~eai~~L~~cl~VLel~~k~~e~i~ekkyy~ALktL----d~Le~~~L~~v 174 (790)
+-.++++|.+.-.=...=...++.|..--.+.+.-.|++++|+.++||+|=.+| +.|++- |..|
T Consensus 112 l~~~rdeLqklw~~~~q~K~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~lng~-L~~V 179 (982)
T KOG3691|consen 112 LNTRRDELQKLWAENSQYKKVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLTRAWELLNGP-LDGV 179 (982)
T ss_pred HhcCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-chhh
Confidence 888888887655444444556788888888889999999999999999996655 444443 4444
No 14
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=96.95 E-value=0.0069 Score=53.49 Aligned_cols=74 Identities=23% Similarity=0.374 Sum_probs=63.4
Q ss_pred hhHHHHHHHhcCCh---hHHHHHHHHHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHH
Q 003870 33 LGPIVRHAFETGRP---EALLHQLKSVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEV 106 (790)
Q Consensus 33 l~piik~~~~~~~~---~~~l~~L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s 106 (790)
.-+.++..+.+... ..+...|...++.++.|+..++..||.+|+.+.+++..|+.++.+|++.+.++...++..
T Consensus 8 ~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l 84 (87)
T PF08700_consen 8 VDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSL 84 (87)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666654 446677999999999999999999999999999999999999999999999998888764
No 15
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=1.6 Score=52.56 Aligned_cols=452 Identities=13% Similarity=0.054 Sum_probs=263.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccHH---HhhHH
Q 003870 89 AEELKSDLSSDNYRLQEVGSALLIKLEELLESYAIKKNVTGAIKMGKICVQVLDLCVKCNNHITDGQ-FYPA---LKTID 164 (790)
Q Consensus 89 ~~~L~~~l~~~n~~Lq~s~~~L~~kk~~L~~~r~v~~nI~eai~~L~~cl~VLel~~k~~e~i~ekk-yy~A---LktLd 164 (790)
-...+++..++..++-+.-..|.+..++|+..+.--.+-..-.-.+......+.+|-+|-|+...-+ +-++ ..+|.
T Consensus 82 L~~Vr~daq~Lks~vsd~N~rLQ~~g~eLiv~~e~lv~~r~~~rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLk 161 (800)
T KOG2176|consen 82 LLKVRGDAQKLKSQVSDTNRRLQESGKELIVKKEDLVRCRTQSRNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALK 161 (800)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3455667777888888888999999999998877766666667777788888888888877765422 2222 11222
Q ss_pred HHHHhhcCCCCchHHHHHHHhhchhHHH---------HHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHhHH
Q 003870 165 LIEKNYLQIIPVKALKMVIEKTIPVIKT---------HIEKKVTSQFNEWLVHVRSSAKDIGQT--AIGRAASARQRDEE 233 (790)
Q Consensus 165 ~Le~~~L~~v~~~~f~~~i~~sIP~lr~---------~Ik~~~~~~l~~WL~~IR~~s~~IG~~--a~~~~~~~~~~~~~ 233 (790)
-++. +-+.=-..+|..+- .||+... +.....+|+.+..||+. -+++++..++. +.
T Consensus 162 tle~----------lE~~yL~~~~~~~~~~~i~~~Ip~ik~~i~---~~~~~~~~e~L~~irk~s~~iGq~ai~~~~-~a 227 (800)
T KOG2176|consen 162 TLES----------LEKVYLPRVSNFRFLIVIQNRIPFIKEVIK---SKSMSDFREWLENIRKKSPKIGQTAIQQAK-EA 227 (800)
T ss_pred HHHH----------HHHHHHHhcccchhhHHHhhcchHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HH
Confidence 2211 11112233443222 2344433 34455666666666666 34555555555 44
Q ss_pred HHHHHHHhhhhccCCCCCccc-----ccccCCcCc-cccc---ccCcchHHHHHHHHHhcCChhHHHHHHHHHhHhhhhc
Q 003870 234 MLDRQRKAEEQNLSGFGDFSF-----TLEVEDIDE-DSVL---KFDLTPLYRAYHIHTCLGIPSQFREYYYRNRLLQLTS 304 (790)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~-----~l~~e~~~e-~~~~---~iDf~Ply~cihI~~~Lg~~e~F~~yY~~~Rr~Q~~l 304 (790)
+..|.+.... +-...+..- .+...+..+ |... .++++|.+.|.||....+.-..+..+|+..+..+.+.
T Consensus 228 r~r~~~~~~~--~~~~~e~~~~~~l~~l~~~~~~e~d~~~~s~~~~~~~~~~~~~~~~~d~~plyr~~hi~~~Lg~~~~f 305 (800)
T KOG2176|consen 228 RQRWEEEKFN--KQIEAEEQSTGSLAKLAYGLEFEEDDEHDSIMIFQDLNELSGAIDKFDFEPLYRCLHIHSVLGLRERF 305 (800)
T ss_pred HHHHHHHhhh--ccchHHHhhhhhHHHHhcccccccccccccchhccCcccccchheeecccHHHHHHHHHHHHhhHHHH
Confidence 4445431110 000000000 011111112 2222 3889999999999999999998888888887776433
Q ss_pred cccCCCccchHHHHHHHHHHHhhHHhhhHHHHhhhCCCCChhhHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 003870 305 DLQISSVQPFVESYQTFLAQIAGYFIVEDRVLRTAGGLLLPDQLETMWETAVAKITSVLEEQFSHMDSATHLLLVKDYVT 384 (790)
Q Consensus 305 ~l~~~~~~~~~~~l~~yl~~I~GFFvvE~~vl~tt~~l~s~~~vdelW~~~~~kl~~~l~~~~~~~~~~~~ll~iK~~i~ 384 (790)
.. .....=..|+.|+|.+..+.+.+..++.+.-.....|-.+-.++......++.+ ++.=..-+..+.
T Consensus 306 ~~---------~y~~nr~~q~~~~~q~~~t~~~~l~~~~ty~~~i~Gffived~il~t~~~~~s~---~~ve~lW~~~i~ 373 (800)
T KOG2176|consen 306 RA---------YYQMNRRLQADLVLQPPFTQLDSLEGYQTYFNQIAGFFIVEDHILRTTGGFLSY---NEVEELWDTAIS 373 (800)
T ss_pred HH---------HHHHhHHHhhhcccCCCcchhhHHHHHHHHHHHHhhHHHHHHHHHHhhhcccch---HHHHHHHHHHHH
Confidence 21 122344566999999999999999999999999999999999999888777765 222222444555
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccccCChHHHHhhhhhccCCCCCCCCCCCcc
Q 003870 385 LLGATLRQYGYEVGPVLEVLDKSQDKYHELLLEECQQQITTVLTNDTYEQMLMKKDTDYENNVLLFHLQSSDIMPAFPYI 464 (790)
Q Consensus 385 lf~~tl~~ygy~v~~L~~~L~~l~d~Y~elL~~~~~~~f~~il~~D~y~Pm~V~~~eey~~~v~~~~~~~~~~~~~fP~~ 464 (790)
-|+.||+.+ +
T Consensus 374 k~v~~L~~~-------------------------~--------------------------------------------- 383 (800)
T KOG2176|consen 374 KLVATLSYQ-------------------------S--------------------------------------------- 383 (800)
T ss_pred HHHHHHHHH-------------------------H---------------------------------------------
Confidence 555555432 0
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhc-cCCcc-cHHHHHHHHH----HHHHHHHHHHHHHHhhhcCCcChHHHHHHHHhH
Q 003870 465 APFSSMVPDACRIVRSFIKGSVDYLS-YGMHA-NYFDVLRKYL----DKLLIDVLNEVILNTITGGSIGVSQAMQIAANI 538 (790)
Q Consensus 465 lPFS~~vP~~c~~ir~fi~~~~~f~~-~~~~~-eide~v~ks~----d~lL~~~v~~~L~~~i~~~~~~l~qi~QI~iN~ 538 (790)
++.-=|..-..+|+||.-+..-++ +++.. -+.+++.+.. ..|| +.+.+..+..+++ .+-+|++++-
T Consensus 384 --s~~~t~~~ll~lKd~i~L~~~tl~~yg~~V~~l~~~l~~~rdky~e~LL-~~~~~~f~e~l~~-----D~f~pm~V~~ 455 (800)
T KOG2176|consen 384 --SRCQTPNHLLKLKDLIVLLGATLENYGFNVEPLYDLLVEIRDKYHEVLL-RKWRKIFREALEK-----DDFMPMVVKK 455 (800)
T ss_pred --HhcCChhHHHHHHhHHHHHHHHHHHcCCchhHHHHHHHHHHhhHHHHHH-HHHHHHHHHHhhh-----hccccccccc
Confidence 000113344567888877766665 34432 2445544433 3333 5566666666654 3566677885
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhccccccCCCCCcch
Q 003870 539 TFLERACDYFLRHAAQLCGIPVRSVQKPQATLMAKVVLKTSRDAAYITLLNLVNTKLDEFMALTENINWTTEDTSQNGNE 618 (790)
Q Consensus 539 ~~le~ac~~~e~~~~~l~~~~~~~~~~~~~~l~a~~~f~~~r~~Ae~~I~~lv~~KIdeflel~~~yDW~~~~~~~~ps~ 618 (790)
+.+ |+..+.+ .|.. ..+.-.+ .| =. ++-+--+-+.+-+.+..
T Consensus 456 e~~------Ye~~v~~---fp~~--~~e~~~~----~F----------------------p~-~~pFS~mvP~~c~~~k~ 497 (800)
T KOG2176|consen 456 EEE------YEKNVLS---FPFQ--NEELEPL----PF----------------------PK-TFPFSPMVPDVCTQAKK 497 (800)
T ss_pred HHH------Hhhhhhc---cccc--cccccCC----CC----------------------cc-cCCCCcCCchHHHHHHH
Confidence 543 3322221 1110 0000000 00 00 12222333344456777
Q ss_pred hHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhhccCccccccCHHHHHHHHHHHHHHHHhhh
Q 003870 619 YMNEVIIYLDTLMSTAQQILPLDALYKVGSGALEHISNSIVSAFLSDSVKRFNANAVAIINHDLKKLEDFSD 690 (790)
Q Consensus 619 yi~dli~fL~~~f~s~~~~LP~~v~~~~~~~a~~his~~ll~~Ll~~~vk~in~~al~n~~~Dv~~lE~f~~ 690 (790)
||...+.||.- +..++.++...++..+..-+-.++...++ -..+.+|..-..++..+..|+|.-++
T Consensus 498 fi~~~v~fls~-----~~l~~~e~~~~~~~~~~l~l~rs~vl~~~-~~~~~~~lsq~~QI~~n~~~fe~a~~ 563 (800)
T KOG2176|consen 498 FIYACVKFLSD-----LVLLETEVLNKIRKDTNLLLTRSLVLSLT-SSLPSLNLSQAMQIAANLDYFEIAAD 563 (800)
T ss_pred HHHHHHHHHHH-----HhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHhhH
Confidence 88888888774 24567888888888888888888874443 34567888888888888888765433
No 16
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=2 Score=52.24 Aligned_cols=587 Identities=14% Similarity=0.150 Sum_probs=295.0
Q ss_pred ChhHHHHHHHHHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHH----HHHH-HHHhhHHHHHHHHHHHHHHHHHHH
Q 003870 45 RPEALLHQLKSVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEE----LKSD-LSSDNYRLQEVGSALLIKLEELLE 119 (790)
Q Consensus 45 ~~~~~l~~L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~----L~~~-l~~~n~~Lq~s~~~L~~kk~~L~~ 119 (790)
+...++..|....+.+...=..+-+.|...|++|.+.|..+|+.-.+ ..+. ...+-..+..+...--.-=+++++
T Consensus 188 dLk~~i~~lK~~~n~~~~~~~~lvK~n~~~fi~~~dtl~~i~~kLe~~e~~~~gs~t~~l~n~i~~~~s~ad~iF~~vl~ 267 (934)
T KOG2347|consen 188 DLKAGILNLKRDLNGRKEGSLQLVKDNFDSFISCKDTLDNIHQKLERGEEDPHGSGTTKLENCIKNSTSRADLIFEDVLE 267 (934)
T ss_pred HHHHHHHHHHHhhcchhhhhHHHHhcchhHHHHHHHHHHHHHHHHhccccCccchHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 55667777888888887778889999999999999999999976544 1111 222333333333222222234444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHhhHHHHHHhhcCCCCchHHHHHHHhhchhHHHHHHHHHH
Q 003870 120 SYAIKKNVTGAIKMGKICVQVLDLCVKCNNHITDGQFYPALKTIDLIEKNYLQIIPVKALKMVIEKTIPVIKTHIEKKVT 199 (790)
Q Consensus 120 ~r~v~~nI~eai~~L~~cl~VLel~~k~~e~i~ekkyy~ALktLd~Le~~~L~~v~~~~f~~~i~~sIP~lr~~Ik~~~~ 199 (790)
.+.-...+..+..+|+.-.-+.-+-+.++.-|+.|.|=-+++.=+.=-..+ +-.-||.+| .++
T Consensus 268 Rk~~ADstRsvL~~lqRfkfLFnLp~~ier~i~kGeYd~vvndYekAKsl~------------~~t~v~~Fk-----k~l 330 (934)
T KOG2347|consen 268 RKDKADSTRSVLGVLQRFKFLFNLPSNIERSIKKGEYDTVVNDYEKAKSLF------------GKTEVNLFK-----KVL 330 (934)
T ss_pred cccccccHHHHHHHHHHHHHHHhcchhhhhHhhcCCceeeccchhhHHHhh------------cccccHHHH-----HHH
Confidence 444444555566777777778888899999999999976655433222222 122333332 333
Q ss_pred HHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhccCCCCCcccccccCCcCcccccccCcchHHHHH
Q 003870 200 SQFNEWLVHVRSS-AKDIGQTAIGRAASARQRDEEMLDRQRKAEEQNLSGFGDFSFTLEVEDIDEDSVLKFDLTPLYRAY 278 (790)
Q Consensus 200 ~~l~~WL~~IR~~-s~~IG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~e~~~~~iDf~Ply~ci 278 (790)
+++..=+..+|+. .+.+=..-..-. .+.+....++ .+.---+|+++||
T Consensus 331 ~Eve~~m~~~k~~l~~kli~~p~t~~-----------dq~~~ir~L~--------------------~L~~~~dP~wq~I 379 (934)
T KOG2347|consen 331 EEVEKRMQSFKETLYRKLIDTPITFE-----------DQSKLIRYLS--------------------ELEPESDPVWQCI 379 (934)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHH-----------HHHHHHHHHH--------------------HhCcccCchhhhc
Confidence 3444444333332 111111100000 0000000000 0011234677776
Q ss_pred HH--HHhcCChhHHHHHHHH----------HhHhhhhccccCC--------------C-------ccchHHHHHHHHH--
Q 003870 279 HI--HTCLGIPSQFREYYYR----------NRLLQLTSDLQIS--------------S-------VQPFVESYQTFLA-- 323 (790)
Q Consensus 279 hI--~~~Lg~~e~F~~yY~~----------~Rr~Q~~l~l~~~--------------~-------~~~~~~~l~~yl~-- 323 (790)
-+ +..+|..+....-|-+ +++.|-+ .+..+ . .-.+.+....++.
T Consensus 380 ~~q~k~i~~L~~s~~~~~~~~l~~~~~~~~~~q~s~~-g~~~S~t~s~~~~~~~q~~~~~~~~~k~~~r~~fiekL~~l~ 458 (934)
T KOG2347|consen 380 GVQNKRILGLLESCWDDHVARLEGLRLSDKWTQPSQN-GVHLSDTASSMENSQNQVINEWKIREKTPERVNFIEKLTDLL 458 (934)
T ss_pred cccchHHHhhhhhcchhHHHHhhcccccccccchhhc-ccccCchHHHHhhhhhhhccchhhhhhchHHHHHHHHHHHHH
Confidence 31 1123332222211111 1111110 00000 0 0001111111111
Q ss_pred -------------HHhh-HHhhhHHHHhhhC-CCCChhhHHHHHHHHHHHHHHHHHHHhc-c-----CC----ChHH---
Q 003870 324 -------------QIAG-YFIVEDRVLRTAG-GLLLPDQLETMWETAVAKITSVLEEQFS-H-----MD----SATH--- 375 (790)
Q Consensus 324 -------------~I~G-FFvvE~~vl~tt~-~l~s~~~vdelW~~~~~kl~~~l~~~~~-~-----~~----~~~~--- 375 (790)
=..| =|..+.++..+.. .-+.++.+-+-|+.+.+-+.-.+...+. . .. +++.
T Consensus 459 ~s~lP~fWKl~~sy~~G~~~~~~sq~~~s~~~k~~qn~~~~~~~~v~~sLv~~~~~~~~t~s~~~~~a~~~~~~~dis~~ 538 (934)
T KOG2347|consen 459 LSQLPIFWKLAISYFNGDLFSPSSQVQDSDINKMEQNNEVREKREVFHSLVELALMDRFTLSQSDGKAKSPFGDADISRS 538 (934)
T ss_pred HHhCcHHHHHHHHHhcccccCcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccCCcCCcccccc
Confidence 1223 3333332221111 1122233667787776533322211111 0 00 1111
Q ss_pred ----HHHHHHHHHHHHHHhhhcCCCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccccC--------C
Q 003870 376 ----LLLVKDYVTLLGATLRQYGYEVG----PVLEVLDKSQDKYHELLLEECQQQITTVLTNDTYEQMLMK--------K 439 (790)
Q Consensus 376 ----ll~iK~~i~lf~~tl~~ygy~v~----~L~~~L~~l~d~Y~elL~~~~~~~f~~il~~D~y~Pm~V~--------~ 439 (790)
+=.--+++-.-|++|....|-.. ++.++.++.+-+---..++........+....+..|-.+. .
T Consensus 539 ~~~~~~~~i~~vr~~~~sL~ale~~P~~~lq~Iq~li~~~rl~~~~~~~~~~~e~is~l~~re~W~~~s~~~rn~s~t~L 618 (934)
T KOG2347|consen 539 LLPWMPLAIKTVRKACQSLEALESLPHDALQPIQKLITEARLQCLSSWMRASTERISTLAKRETWIPDSILERNRSITYL 618 (934)
T ss_pred cCccchhHHHHhHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcccchhhh
Confidence 11234678888999999886544 6677777777777777788888888888888888776331 1
Q ss_pred hHHHHhhhhhccCCCCCCCCCCCc---cccCCCchHHHHHHHHHHHHHHHHHhccCCc--ccHH-HHHHHHHHHHHHHH-
Q 003870 440 DTDYENNVLLFHLQSSDIMPAFPY---IAPFSSMVPDACRIVRSFIKGSVDYLSYGMH--ANYF-DVLRKYLDKLLIDV- 512 (790)
Q Consensus 440 ~eey~~~v~~~~~~~~~~~~~fP~---~lPFS~~vP~~c~~ir~fi~~~~~f~~~~~~--~eid-e~v~ks~d~lL~~~- 512 (790)
...|+.++..+--+.......||. .||=+.|+-.+|...-+++..+.--++.+.. .+++ +.-...++ +.+..
T Consensus 619 P~~fEt~ivssl~q~~~~~l~~~gEa~~f~~~~~~~~i~el~I~~~~~fl~c~e~L~~h~~~~~~~~~q~~t~-~~~~~~ 697 (934)
T KOG2347|consen 619 PLAFETVIVSSLEQVNSVLLSFEGEAALFEQPDMQAEIEELSISVRLAFLNCFEDLAIHLEQIGADLSQLTTQ-IEGQNG 697 (934)
T ss_pred hHHHHHHHhhhHHhhhhHHhhccccccccCchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCchhhcccc-cccccc
Confidence 223443221111000000011211 1222588999999888877776533332221 1111 11000011 00000
Q ss_pred HHH-HHHH-hhhcC--CcChHH-HHHHHHhHHHHHHHHHHHHHHHHHHcCCCccccCCccchhhHHHHHHHHHHHHHHHH
Q 003870 513 LNE-VILN-TITGG--SIGVSQ-AMQIAANITFLERACDYFLRHAAQLCGIPVRSVQKPQATLMAKVVLKTSRDAAYITL 587 (790)
Q Consensus 513 v~~-~L~~-~i~~~--~~~l~q-i~QI~iN~~~le~ac~~~e~~~~~l~~~~~~~~~~~~~~l~a~~~f~~~r~~Ae~~I 587 (790)
..+ ...+ .+++. ...-.| +.=++.|++|.. +.+. ..++++... .... ...+.+.+..+-+.-+.++
T Consensus 698 ~~~~~qed~~~ns~~~~~~~~qrlLi~LsN~~yc~----~~~~--~~l~n~fk~-~~~~--~~k~iE~is~s~s~l~s~l 768 (934)
T KOG2347|consen 698 FSNAHQEDISINSADSVVDPEQRLLIVLSNIGYCK----DILA--PTLLNIFKY-TWLL--SRKNIEDISMSLSGLGSKL 768 (934)
T ss_pred cccccchhhhcccccccCChhheeEEEeccHHHHH----HHHH--HHHHHHHHH-Hhhc--ccccHHHHHHHHHHHHHHH
Confidence 000 1011 11110 011122 444667877764 2221 112111100 0000 0112333443333334444
Q ss_pred H-HHHHhhHHHHHhhhhh------ccccccCCCCCcchhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHh
Q 003870 588 L-NLVNTKLDEFMALTEN------INWTTEDTSQNGNEYMNEVIIYLDTLMSTAQQILPLDALYKVGSGALEHISNSIVS 660 (790)
Q Consensus 588 ~-~lv~~KIdeflel~~~------yDW~~~~~~~~ps~yi~dli~fL~~~f~s~~~~LP~~v~~~~~~~a~~his~~ll~ 660 (790)
+ ..+..|.|-+.+.+++ ++|-..-+.++-.+|+++++.=|-.+-+-++.. -+.+...+.-.+...|++.|+.
T Consensus 769 ~e~Yi~~k~~~i~~alEp~~~~~~~~W~~~~~~~~irdYa~E~l~~lV~VhaEvf~i-ap~Ll~kiL~~~ve~i~d~L~~ 847 (934)
T KOG2347|consen 769 FENYIEDKADPIRGALEPYLLDGGIQWGMAPPVKGIRDYAKEALHNLVAVHAEVFAI-APQLLDKILGETVEGISDELLR 847 (934)
T ss_pred HHHHHHHhhhhhhhcccchhhccccccccCCCccchHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4677788877664444 699877779999999999999998777777654 5577777888889999999986
Q ss_pred hccCccccccCHHHHHHHHHHHHHHHHhhhhh
Q 003870 661 AFLSDSVKRFNANAVAIINHDLKKLEDFSDEK 692 (790)
Q Consensus 661 ~Ll~~~vk~in~~al~n~~~Dv~~lE~f~~~~ 692 (790)
++ ++.|..++.+|.-|+-+|+.|+|+-+..-
T Consensus 848 l~-~~~v~s~S~nG~lQi~vdl~~l~~~l~~Y 878 (934)
T KOG2347|consen 848 LF-SCDVQSFSANGALQIMVDLEYLEDVLGPY 878 (934)
T ss_pred Hh-hhhhhccCCCcceeeeeeHHHHHHHHHHh
Confidence 55 56799999999999999999999887753
No 17
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=96.48 E-value=0.14 Score=57.91 Aligned_cols=160 Identities=15% Similarity=0.191 Sum_probs=120.9
Q ss_pred ChhHHHHHHHHHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003870 45 RPEALLHQLKSVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVGSALLIKLEELLESYAIK 124 (790)
Q Consensus 45 ~~~~~l~~L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~~kk~~L~~~r~v~ 124 (790)
+.+.++..++..+.+-|.||.+.-..+...=.++-..|-..+....+|-.+|.++...-+++-..+.+-.+..-..=..+
T Consensus 22 ~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AK 101 (383)
T PF04100_consen 22 NLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQLDNAK 101 (383)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999887766543223344556677788888888888888888888888888888888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHH---HhhHHHHHHhhcCCCCch-HHHHHHHhhchhHHHHHHHHHHH
Q 003870 125 KNVTGAIKMGKICVQVLDLCVKCNNHITDGQFYPA---LKTIDLIEKNYLQIIPVK-ALKMVIEKTIPVIKTHIEKKVTS 200 (790)
Q Consensus 125 ~nI~eai~~L~~cl~VLel~~k~~e~i~ekkyy~A---LktLd~Le~~~L~~v~~~-~f~~~i~~sIP~lr~~Ik~~~~~ 200 (790)
+|+..+|-+|+.-.-+...+..+..+++.++|=.+ |+.+-+|- .|..++..- ..+. +.++|-.++..+++.++.
T Consensus 102 rNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~-~~F~~yksi~~I~~-L~~~i~~l~~~L~~qI~~ 179 (383)
T PF04100_consen 102 RNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELL-EHFKPYKSIPQIAE-LSKRIDQLQNELKEQIFE 179 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHHcccCcHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998766 44444443 344443322 2333 666777777777777777
Q ss_pred HHHHHH
Q 003870 201 QFNEWL 206 (790)
Q Consensus 201 ~l~~WL 206 (790)
||..-+
T Consensus 180 df~~~f 185 (383)
T PF04100_consen 180 DFEELF 185 (383)
T ss_pred HHHHHh
Confidence 666543
No 18
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=96.42 E-value=0.088 Score=55.57 Aligned_cols=115 Identities=12% Similarity=0.275 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhhhccccccCCCCCcchhHHHHHHHHHHHHHHH-----hhhCCHHHHHHHHHHHH
Q 003870 577 KTSRDAAYITLLNLVNTKLDEFMALTENINWTTEDTSQNGNEYMNEVIIYLDTLMSTA-----QQILPLDALYKVGSGAL 651 (790)
Q Consensus 577 ~~~r~~Ae~~I~~lv~~KIdeflel~~~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~-----~~~LP~~v~~~~~~~a~ 651 (790)
.+.|.-....+...+= .++.++...+...|.-.+++.++|.|+.+++.-+......+ ...+|.++...+.-.+.
T Consensus 52 ~dLr~~iy~~~a~~~l-~~~~i~~~Ia~vKWdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i 130 (234)
T PF10474_consen 52 PDLREPIYKCVASRLL-DLEQILNSIANVKWDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLI 130 (234)
T ss_pred HHHHHHHHHHHHHHHc-CHHHHHHHHHHcCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3444444433333321 35567766788999999999999999999999998865433 25789998888666666
Q ss_pred HHHHHHHHhhccCccccccCHHHHHHHHHHHHHHHHhhhhhcc
Q 003870 652 EHISNSIVSAFLSDSVKRFNANAVAIINHDLKKLEDFSDEKFH 694 (790)
Q Consensus 652 ~his~~ll~~Ll~~~vk~in~~al~n~~~Dv~~lE~f~~~~~~ 694 (790)
..+.+.|++=+ ..||+-|.+|=+.+.+|++.+...+....+
T Consensus 131 ~~~~~~Lveg~--s~vkKCs~eGRalM~lD~q~~~~~le~l~~ 171 (234)
T PF10474_consen 131 FFAFETLVEGY--SRVKKCSNEGRALMQLDFQQLQNKLEKLSG 171 (234)
T ss_pred HHHHHHHHHHH--HhccCCChhhHHHHHHHHHHHHHHHHHHcC
Confidence 66666666666 579999999999999999999888887643
No 19
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=96.41 E-value=0.25 Score=55.07 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=90.0
Q ss_pred HHHHHHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 003870 51 HQLKSVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRL---QEVGSALLIKLEELLESYAIKKNV 127 (790)
Q Consensus 51 ~~L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~L---q~s~~~L~~kk~~L~~~r~v~~nI 127 (790)
+.|..-+.+-+.+|+.+|..||.-|+++-+.+..++.+..++.+.+.++...| ++.......+.+...+.|+....+
T Consensus 17 ~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~r~~~~~~ 96 (338)
T PF04124_consen 17 QSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEERKKASLL 96 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788889999999999999999999999999999999999888888888666 555566666666666665544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHhhHHHHHH
Q 003870 128 TGAIKMGKICVQVLDLCVKCNNHITDGQFYPALKTIDLIEK 168 (790)
Q Consensus 128 ~eai~~L~~cl~VLel~~k~~e~i~ekkyy~ALktLd~Le~ 168 (790)
.+.....+.+||+=.-+..-|+.|.|=.||-...-+.+
T Consensus 97 ---l~~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~ 134 (338)
T PF04124_consen 97 ---LENHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRR 134 (338)
T ss_pred ---HHHHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHH
Confidence 45555567778888888899999999999876555433
No 20
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.60 E-value=6.3 Score=45.88 Aligned_cols=564 Identities=13% Similarity=0.075 Sum_probs=261.7
Q ss_pred HHHhcCChhHHHHHHHHHHHhhHHHHHHHhhhchhHHHHHHHHH-------HhhhhhHHHHHHHHHHhhHHHHHHHHHHH
Q 003870 39 HAFETGRPEALLHQLKSVVRKKEAEIEELCKTHYEEFILAVDEL-------RGVLVDAEELKSDLSSDNYRLQEVGSALL 111 (790)
Q Consensus 39 ~~~~~~~~~~~l~~L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L-------~~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~ 111 (790)
.+-..-+.+.+-+.|.-+.+.-..+.=++-|.-|-|||+=-..| -+|++.-.+|+++|.++-+++.++.+.+-
T Consensus 41 ~~R~~v~letLrddLrlylksl~~aMieLIN~DYADFVnLStnLVgld~aln~i~qpL~qlreei~s~rgsV~ea~~alr 120 (705)
T KOG2307|consen 41 LARQKVDLETLRDDLRLYLKSLQNAMIELINDDYADFVNLSTNLVGLDDALNKIEQPLNQLREEIKSTRGSVGEAERALR 120 (705)
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33334477888889999999999999999999999999755444 45566666777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccHHHhhHHHHHHhhcCCCCchHHHHHHHhhchhH
Q 003870 112 IKLEELLESYAIKKNVTGAIKMGKICVQVLDLCVKCNNHITDG-QFYPALKTIDLIEKNYLQIIPVKALKMVIEKTIPVI 190 (790)
Q Consensus 112 ~kk~~L~~~r~v~~nI~eai~~L~~cl~VLel~~k~~e~i~ek-kyy~ALktLd~Le~~~L~~v~~~~f~~~i~~sIP~l 190 (790)
.+.+++-..|..+.-+ ..-..|+...+|+.+.+--. .=..++++-. ||++
T Consensus 121 ~q~se~~~~Re~k~~l-------ldl~~v~~~ieKL~k~L~s~psk~q~~~a~s-LERi--------------------- 171 (705)
T KOG2307|consen 121 QQCSELCSNREKKIEL-------LDLIYVLVAIEKLSKMLLSPPSKEQQDGATS-LERI--------------------- 171 (705)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcCCcccccccccch-HHHH---------------------
Confidence 7777777666665443 33344555555555554321 1112222222 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhccCCCCCcccccccCCcCcccccccC
Q 003870 191 KTHIEKKVTSQFNEWLVHVRSSAKDIGQTAIGRAASARQRDEEMLDRQRKAEEQNLSGFGDFSFTLEVEDIDEDSVLKFD 270 (790)
Q Consensus 191 r~~Ik~~~~~~l~~WL~~IR~~s~~IG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~e~~~~~iD 270 (790)
--||+.+.-+....-..-+.+++.+.+-.+.+..+.- .++ . .+-++-|
T Consensus 172 ------------Alelnqlkf~a~h~k~~l~p~~e~ria~~~~~L~qsl-------~~l------------f-~eglqsa 219 (705)
T KOG2307|consen 172 ------------ALELNQLKFHASHLKGSLFPHSEERIAAEKIILSQSL-------AVL------------F-AEGLQSA 219 (705)
T ss_pred ------------HHHHHHHHHHHHHhhcccCcchhhHHhhHHHHHHHHH-------HHH------------H-HHHhhcc
Confidence 2244333333222111133333333322222221100 000 0 0111236
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHhHhhhh-ccccCCCccchHHHHHHHHHHHhhHHh-hhHHHHh--hhCCCCC--
Q 003870 271 LTPLYRAYHIHTCLGIPSQFREYYYRNRLLQLT-SDLQISSVQPFVESYQTFLAQIAGYFI-VEDRVLR--TAGGLLL-- 344 (790)
Q Consensus 271 f~Ply~cihI~~~Lg~~e~F~~yY~~~Rr~Q~~-l~l~~~~~~~~~~~l~~yl~~I~GFFv-vE~~vl~--tt~~l~s-- 344 (790)
-+-+|+|+.||.+|+.-+.=+.-++..=..-.- -.+.-........++.....||.-|.- -....++ |+...+.
T Consensus 220 ~~~l~nclriYatld~t~~ae~lfr~~vvapyi~evI~eq~~e~sp~gl~~~ykqilefv~~h~c~llre~tssdk~g~~ 299 (705)
T KOG2307|consen 220 AGDLQNCLRIYATLDLTESAESLFRLLVVAPYIAEVINEQHDETSPSGLLKLYKQILEFVKKHRCTLLREMTSSDKRGLP 299 (705)
T ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhcCCCc
Confidence 778999999999999855544444332211000 000000000111567777788888865 2333333 3222221
Q ss_pred -hhh-HHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhcCCCchhH-------HHHHHHHHHH-----
Q 003870 345 -PDQ-LETMWETAVAKITSVLEEQFSHMDSATHLLLVKDYVTLLGATLRQYGYEVGPV-------LEVLDKSQDK----- 410 (790)
Q Consensus 345 -~~~-vdelW~~~~~kl~~~l~~~~~~~~~~~~ll~iK~~i~lf~~tl~~ygy~v~~L-------~~~L~~l~d~----- 410 (790)
..- ++.+|.-+++.+-..+...+.- .+|+.+..==..-.=|..-+++.-+=-+.+ .....++-++
T Consensus 300 ~fdFlvnS~l~~ilt~iek~mps~f~P-gnp~~F~ekyk~t~DFl~~le~~~tC~s~~avt~~Rah~~~~sF~kkwNl~V 378 (705)
T KOG2307|consen 300 GFDFLVNSLLTFILTFIEKCMPSVFVP-GNPRLFHEKYKLTQDFLDNLESSHTCRSMLAVTKFRAHAICVSFMKKWNLPV 378 (705)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccCC-CCcHHHHHHHHHHHHHHHhccccCcCchHHHHHHHHhhhHHHHHHHhcCcce
Confidence 222 6778887777666555444431 345554332222222333333211111111 0111111111
Q ss_pred HHHHHHHHHHHHHHhhhhcC-CCcccccCChHHHHhhhhhccCCCCCCCCCCCccccCCCchHHHHHHHHHHHHHHHHHh
Q 003870 411 YHELLLEECQQQITTVLTND-TYEQMLMKKDTDYENNVLLFHLQSSDIMPAFPYIAPFSSMVPDACRIVRSFIKGSVDYL 489 (790)
Q Consensus 411 Y~elL~~~~~~~f~~il~~D-~y~Pm~V~~~eey~~~v~~~~~~~~~~~~~fP~~lPFS~~vP~~c~~ir~fi~~~~~f~ 489 (790)
|-.+--+++...|...+... .-.|+.=++.| ..-|.+|..-+..++..-.-+
T Consensus 379 YFqlrfqeiag~ldaaLtp~~~~d~l~d~~~E---------------------------st~~l~l~as~a~~ealrrcW 431 (705)
T KOG2307|consen 379 YFQLRFQEIAGQLDAALTPEMFADPLTDENRE---------------------------STPQLHLGASRAIIEALRRCW 431 (705)
T ss_pred eEeeeHHHHHHHHHHhcCchhhcccccccccc---------------------------cCccchhhHhHHHHHHHHHHc
Confidence 11233344444444444322 11122211111 111223333333333322222
Q ss_pred cc-CCccc-HHHHHHHHHHHHHHHHH--HHHHHHhhhcCCc---ChHHHHHHH-HhHHHHHHHHHHHHHHHHHHcCCCcc
Q 003870 490 SY-GMHAN-YFDVLRKYLDKLLIDVL--NEVILNTITGGSI---GVSQAMQIA-ANITFLERACDYFLRHAAQLCGIPVR 561 (790)
Q Consensus 490 ~~-~~~~e-ide~v~ks~d~lL~~~v--~~~L~~~i~~~~~---~l~qi~QI~-iN~~~le~ac~~~e~~~~~l~~~~~~ 561 (790)
.+ .+... +|...|=.+- +|.|.- ..+|...-.++.. +-.|+|=.. -...-+..-|+++..+|..-......
T Consensus 432 sddvylp~~vdKl~rltlQ-lllRysrwisaitns~gs~~skp~trtqlvyv~hdd~~llqevl~elle~I~~kl~~~~k 510 (705)
T KOG2307|consen 432 SDDVYLPPIVDKLWRLTLQ-LLLRYSRWISAITNSFGSEKSKPATRTQLVYVRHDDGNLLQEVLPELLESIWGKLHDITK 510 (705)
T ss_pred cccccchhhHHHHHHHHHH-HHHHHhHHHHHHHhccCCCCCCCcchhheeeeecccchHHHHHhHHHHHHHHhhccchhh
Confidence 21 11111 2222221222 122221 1122222212211 223333221 11123344466666554432221100
Q ss_pred ccCCc-cchhh-HHHHHHHHHHHHHHHHHHHHHhhHHHH----HhhhhhccccccCCCCCcchhHHHHHHHHHHHHHHHh
Q 003870 562 SVQKP-QATLM-AKVVLKTSRDAAYITLLNLVNTKLDEF----MALTENINWTTEDTSQNGNEYMNEVIIYLDTLMSTAQ 635 (790)
Q Consensus 562 ~~~~~-~~~l~-a~~~f~~~r~~Ae~~I~~lv~~KIdef----lel~~~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~~ 635 (790)
..... ...+. ....|.+.--.-.+.|++++-.+--+. .+..+-|-||-.++|+.+|.|+..++.=+...-.-.-
T Consensus 511 ~~sdv~a~sle~~g~Sl~a~lp~i~ktIIe~lsd~~~~~lrqv~dvprlyR~TnKevPtthSsYVv~aLrpvkal~eg~k 590 (705)
T KOG2307|consen 511 VFSDVFAQSLEKHGRSLDALLPQIDKTIIEMLSDVCHQELRQVSDVPRLYRWTNKEVPTTHSSYVVTALRPVKALKEGLK 590 (705)
T ss_pred hhHHHHHHHHHHhcccHHHHhhhHHHHHHHHHHHHHHHHHHHHhccHHHHHhccCCCCCcchHHHHHHHHHHHHHHHhhh
Confidence 00000 00000 011122222222344555544443333 3334559999999999999999998877766544322
Q ss_pred hhCCHHHHHHHHHHHHHHHHHHHHhhccC--cccc-------------ccCH--------------HHHHHHHHHHHHHH
Q 003870 636 QILPLDALYKVGSGALEHISNSIVSAFLS--DSVK-------------RFNA--------------NAVAIINHDLKKLE 686 (790)
Q Consensus 636 ~~LP~~v~~~~~~~a~~his~~ll~~Ll~--~~vk-------------~in~--------------~al~n~~~Dv~~lE 686 (790)
.-|-..+.+.+..++..||.++.++.--+ +.|+ .=.. -==.|+.+||+|.-
T Consensus 591 ~~L~q~~~eeil~gv~seit~~yye~vsDVl~sv~ktesSL~Rlkq~~~~~~g~s~gss~~vSddDKir~QL~lDv~~~~ 670 (705)
T KOG2307|consen 591 CELEQPHTEEILRGVNSEITNYYYEKVSDVLDSVEKTESSLSRLKQKTTTDSGSSGGSSQTVSDDDKIRQQLYLDVKYFL 670 (705)
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCcCcchHHHHHHHHHHHHHH
Confidence 23445567888888999999988864321 0110 0000 11257889999999
Q ss_pred Hhhhhh
Q 003870 687 DFSDEK 692 (790)
Q Consensus 687 ~f~~~~ 692 (790)
+.+...
T Consensus 671 s~~~kL 676 (705)
T KOG2307|consen 671 SYAEKL 676 (705)
T ss_pred HHHHHh
Confidence 888876
No 21
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=95.24 E-value=2.6 Score=50.08 Aligned_cols=340 Identities=12% Similarity=0.126 Sum_probs=170.7
Q ss_pred cCCChHHHHHHHHHHHHHHHHhhhcCCC-chhH-----HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccccCChHH
Q 003870 369 HMDSATHLLLVKDYVTLLGATLRQYGYE-VGPV-----LEVLDKSQDKYHELLLEECQQQITTVLTNDTYEQMLMKKDTD 442 (790)
Q Consensus 369 ~~~~~~~ll~iK~~i~lf~~tl~~ygy~-v~~L-----~~~L~~l~d~Y~elL~~~~~~~f~~il~~D~y~Pm~V~~~ee 442 (790)
..-+++.++.+=+++..+-.+|++-|+. .+.| .+.+..+.+.|...+..+...=+.+++..|.
T Consensus 160 ~~l~~~~ll~ll~W~~~Y~~~m~~~~l~~~~~l~plL~~~~~~~L~~~Yl~~~~~~~~eW~~n~l~~E~----------- 228 (566)
T PF06046_consen 160 PDLEANDLLSLLSWVNTYPSIMGHPDLAIKEQLGPLLPDEKLEELEDDYLSRIQKKMKEWMDNILEQEV----------- 228 (566)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred CCCCHHHHhhheechhhChHhhcCCcccchhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 3344677888888888899999998876 4444 3555689999999999888888888776542
Q ss_pred HHhhhhhccCCCCCCCCCCCccccCCCchHHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHH-------HHHHHH
Q 003870 443 YENNVLLFHLQSSDIMPAFPYIAPFSSMVPDACRIVRSFIKGSVDYLSYGMHANYFDVLRKYLDKLL-------IDVLNE 515 (790)
Q Consensus 443 y~~~v~~~~~~~~~~~~~fP~~lPFS~~vP~~c~~ir~fi~~~~~f~~~~~~~eide~v~ks~d~lL-------~~~v~~ 515 (790)
+ .|..-..++ .-+--..+|+.-..+.+.|..-+.-. .......+-..+...+-.+| .+.+.+
T Consensus 229 -~---~w~~~~~Pe---~~~dg~y~t~~~~difqmi~qql~va----~~~l~~~v~~~v~~~~~~~l~~~~~~~~~~~~~ 297 (566)
T PF06046_consen 229 -K---DWSEEKEPE---EDEDGYYHTPLPVDIFQMINQQLDVA----SESLQGKVLQRVLEELANFLKSYQDAWQEFKEE 297 (566)
T ss_dssp -H---HHHC-S--E---E-TTS-EE-HHHHHHHHHHHHHHHHH----HHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -H---HhcccCCCC---cCCCCCeecCcHHHHHHHHHHHHHHH----HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122210000 01111344444444555444444433 22112222222222222222 122222
Q ss_pred HHHHhhhc----CCcChHHHHHHHHhHHHHHHHHHHHHHHHHHH----cCCCcc-ccCCccchh-hHHHHHHHHHHHHHH
Q 003870 516 VILNTITG----GSIGVSQAMQIAANITFLERACDYFLRHAAQL----CGIPVR-SVQKPQATL-MAKVVLKTSRDAAYI 585 (790)
Q Consensus 516 ~L~~~i~~----~~~~l~qi~QI~iN~~~le~ac~~~e~~~~~l----~~~~~~-~~~~~~~~l-~a~~~f~~~r~~Ae~ 585 (790)
.+...... ...+..+-+=-++| . |..+..++.++ ...... -.......+ .....|.+..+.|-.
T Consensus 298 ~~~~~~~~~~~~~~~~~~eyliA~~N--~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 371 (566)
T PF06046_consen 298 HFKDRSSVKPKENPPGYLEYLIAVAN--N----CLRCRDYVESLEQKFEEKVSQKYMERISSDLEELMDGFDDLAKECCQ 371 (566)
T ss_dssp HHHHHHHHHHCC--S-HHHHHHHHHH--H----HHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHhhhcccccccccchHHHHHHHhc--c----HHHHHHHHHHHHHhcccccchHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 22222111 00112222212222 2 22222222222 211100 000000011 245668888888888
Q ss_pred HHHHHHHhhHHHHHhhhhhccccccCCCCCcchhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhhccCc
Q 003870 586 TLLNLVNTKLDEFMALTENINWTTEDTSQNGNEYMNEVIIYLDTLMSTAQQILPLDALYKVGSGALEHISNSIVSAFLSD 665 (790)
Q Consensus 586 ~I~~lv~~KIdeflel~~~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~~~~LP~~v~~~~~~~a~~his~~ll~~Ll~~ 665 (790)
.|.+.|-.-++..+.-+-.=.|... ..+..++.=++.-+.-+...|.+...+.++....+++-...+..|+..
T Consensus 372 ~L~~~if~Dl~p~~~~Lft~~W~~~-------~~~~~I~~Ti~dY~~d~~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~k 444 (566)
T PF06046_consen 372 YLLEEIFNDLKPHFKKLFTKKWYSG-------EAVDTICATIEDYLQDFQHYLRPPYFQELIEELHDRVVKEYLRALMKK 444 (566)
T ss_dssp HHHHHHHHCTHHHHCTTTSGGGCTS--------HHHHHHHHHHHHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHGGGG-
T ss_pred HHHHHHHHHhHHHHHHhCcCcCcCc-------chHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888777777777654434578654 777777777777776555448999999999999999999999988876
Q ss_pred cc----cccCHHHHHHHHHHHHHHHHhhhhhcccCCCcccCCcchHHHhhhHHHHHHHHhhcCCCccccchhhh-cccCC
Q 003870 666 SV----KRFNANAVAIINHDLKKLEDFSDEKFHITGLSEINPEGSFRRCLVEARQLINLLISSQPENFMNPVIR-EKNYN 740 (790)
Q Consensus 666 ~v----k~in~~al~n~~~Dv~~lE~f~~~~~~~~g~~~~~~~~~L~~~F~ELrQlidLl~s~~~~~y~~~~~R-~~kY~ 740 (790)
.+ +.....|...+..|+..+.+|..... ....+...|.-|..++.++...|++.+.....- -++|+
T Consensus 445 k~~~~~~~~~~~~a~~i~~D~~~l~~~F~~~~---------~~~~~~~~~~~l~~l~~ll~~~d~~~i~l~~~~l~~~yp 515 (566)
T PF06046_consen 445 KIKFKNKEERKEAAERIRRDAEQLKSFFSKLG---------SKSEVKSSFDVLEDLLELLRLEDPEMIKLEVSSLLQKYP 515 (566)
T ss_dssp --------CCCCCHHHHHHHHHHHHHHHHHHT---------HHHHHHHHHHHHHHHHHHH-HS-CCCHHHHHHHHHCC-T
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHhc---------ccccccchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 54 45788899999999999999998861 245667889999999999988899888544443 37899
Q ss_pred CCChhhHHHHHh
Q 003870 741 ALDYKKVASICE 752 (790)
Q Consensus 741 rv~~~~~~~lLe 752 (790)
-+..+.+.+||.
T Consensus 516 D~~~~~v~alL~ 527 (566)
T PF06046_consen 516 DISEEHVEALLA 527 (566)
T ss_dssp T--SHHHHHHHC
T ss_pred CCCHHHHHHHHH
Confidence 999999999885
No 22
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=95.04 E-value=0.092 Score=48.21 Aligned_cols=101 Identities=19% Similarity=0.190 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHhhccCccccccCHHHHHHHHHHHHHHHHhhhhhcccCCCcccCCcchHHHhhhHHHHHHHHhhcCCC
Q 003870 647 GSGALEHISNSIVSAFLSDSVKRFNANAVAIINHDLKKLEDFSDEKFHITGLSEINPEGSFRRCLVEARQLINLLISSQP 726 (790)
Q Consensus 647 ~~~a~~his~~ll~~Ll~~~vk~in~~al~n~~~Dv~~lE~f~~~~~~~~g~~~~~~~~~L~~~F~ELrQlidLl~s~~~ 726 (790)
+...|.+|+..+++-|+. ..+..+..--.++...+..+|+|+.+. |++ ......|..++|.++||.. +-
T Consensus 3 f~qlf~~i~~~~fN~ll~-~~~~~~~~~g~qi~~nls~l~~W~~~~----~l~-----~~~~~~l~~l~Qa~~lL~~-~k 71 (105)
T PF01843_consen 3 FSQLFHYINASLFNSLLL-RRKYCSWSKGVQIRYNLSELEDWARSH----GLE-----EAAEEHLQPLSQAANLLQL-RK 71 (105)
T ss_dssp HHHHHHHHHHHHHHHHHC-HSS-B-HHHHHHHHHHHHHHHHCCCCT----TST-----TH-HHHCHHHHHHHHHCCC---
T ss_pred HHHHHHHHHHHHHHHHHC-CCCccccccHHHHHHHHHHHHHHHHhc----ccc-----hhHHHHHHHHHHHHHHHHh-cC
Confidence 445788899999997763 334488888889999999999999986 442 1257999999999999999 44
Q ss_pred ccccchhhhcccCCCCChhhHHHHHhhhccCC
Q 003870 727 ENFMNPVIREKNYNALDYKKVASICEKFKDSP 758 (790)
Q Consensus 727 ~~y~~~~~R~~kY~rv~~~~~~~lLeK~~~~~ 758 (790)
+..-|-..+..-+++++|.....||++|++..
T Consensus 72 ~~~~d~~~~~~~c~~Ln~~Qi~~iL~~Y~~~~ 103 (105)
T PF01843_consen 72 STLQDWDSLRETCPSLNPAQIRKILSNYQPDD 103 (105)
T ss_dssp SSHHHHHHHCCCTTTS-HHHHHHHHCCB---T
T ss_pred cchhHHHHHHHHcccCCHHHHHHHHHhCCCcC
Confidence 44556677777899999999999999998764
No 23
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.69 E-value=3.6 Score=49.12 Aligned_cols=125 Identities=12% Similarity=0.108 Sum_probs=79.1
Q ss_pred CChhHHHHHHHHHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003870 44 GRPEALLHQLKSVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVGSALLIKLEELLESYAI 123 (790)
Q Consensus 44 ~~~~~~l~~L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~~kk~~L~~~r~v 123 (790)
.+.+.++.+++..+++.|++|..+-..+--.=-+.=..|-.......+|-+.|.++...-..+-.-+.+-.+++-+.=-.
T Consensus 36 ~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~i~eiks~ae~Te~~V~eiTrdIKqLD~A 115 (793)
T KOG2180|consen 36 TNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQKIQEIKSVAESTEAMVQEITRDIKQLDFA 115 (793)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH
Confidence 36678888899999998888877654432221111111222222222222333333222222223344444555555677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHhhHHHHHH
Q 003870 124 KKNVTGAIKMGKICVQVLDLCVKCNNHITDGQFYPALKTIDLIEK 168 (790)
Q Consensus 124 ~~nI~eai~~L~~cl~VLel~~k~~e~i~ekkyy~ALktLd~Le~ 168 (790)
.+|+..+|-+|+.--=++.-+..++.++.+++|=.|..-|+-.-+
T Consensus 116 KkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ 160 (793)
T KOG2180|consen 116 KKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQ 160 (793)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHH
Confidence 899999999999988889999999999999999998777766544
No 24
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=91.22 E-value=1.5 Score=41.82 Aligned_cols=73 Identities=7% Similarity=0.126 Sum_probs=59.4
Q ss_pred HHHhhHHHHHhhhhhccccccCCCCCcchhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhhc
Q 003870 590 LVNTKLDEFMALTENINWTTEDTSQNGNEYMNEVIIYLDTLMSTAQQILPLDALYKVGSGALEHISNSIVSAF 662 (790)
Q Consensus 590 lv~~KIdeflel~~~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~~~~LP~~v~~~~~~~a~~his~~ll~~L 662 (790)
.+...+..+-+..+-|-||-.++|++||.|+..++.-|..........+|.+....++..++.++++++....
T Consensus 7 ~c~~~L~~v~~Ip~~YR~Tnk~~Pt~~S~yV~~il~Pl~~F~~~~~~~~~~~~~~~~~~~v~~~v~~~y~~~~ 79 (125)
T PF12022_consen 7 RCVEPLKQVRSIPRQYRMTNKPVPTKPSPYVSSILRPLKSFLEEYSSYLSPEIIEEWLQKVITEVTERYYEIA 79 (125)
T ss_pred HHHHHHHHHhhhHHHhhccCCCCCCCccHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445669999999999999999999999999887766688999999999999999999998654
No 25
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.18 E-value=40 Score=40.41 Aligned_cols=146 Identities=9% Similarity=0.028 Sum_probs=98.8
Q ss_pred hHHHhhhcCCCchhHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 003870 21 LVLATLIGNGDDLGPIVRHAFETGRPEALLHQLKSVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDN 100 (790)
Q Consensus 21 ~~~~~~~~~~d~l~piik~~~~~~~~~~~l~~L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n 100 (790)
-+++.+....++..----+..++|....-++.|..-+++.|+|++.--...|.+...-..++..--..-..|...+.++.
T Consensus 48 p~ls~fln~~fSv~~~tSas~~s~~ia~q~~~L~q~lr~ldrqLh~qv~~Rh~allaQat~~~~~d~~l~sl~~~v~~lq 127 (797)
T KOG2211|consen 48 PALSSFLNTLFSVQMMTSASKESNRIATQCDDLTQKLRELDRQLHAQVLKRHMALLAQATEELFEDLELRSLLVKVAELQ 127 (797)
T ss_pred ccccccccchhhhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 34555666666666666788889999999999999999999999988877777776655555444333333444444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cccHHHhhHHHH
Q 003870 101 YRLQEVGSALLIKLEELLESYAIKKNVTGAIKMGKICVQVLDLCVKCNNHITDG--QFYPALKTIDLI 166 (790)
Q Consensus 101 ~~Lq~s~~~L~~kk~~L~~~r~v~~nI~eai~~L~~cl~VLel~~k~~e~i~ek--kyy~ALktLd~L 166 (790)
+.+...-.++.+-.+.....--+-.|...|.+.|+...+.|++..|+..+..-. .--.|.+++-+|
T Consensus 128 s~i~riknd~~epyk~i~~kt~vl~rLhva~~lLrrsgr~l~LskkL~~l~~~~~~d~traaq~lneL 195 (797)
T KOG2211|consen 128 SEIKRIKNDNKEPYKIIWLKTMVLTRLHVAENLLRRSGRALELSKKLASLNSSMVVDATRAAQTLNEL 195 (797)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHHH
Confidence 333333333333333333344556688999999999999999999999776543 255666666665
No 26
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=88.28 E-value=69 Score=38.86 Aligned_cols=235 Identities=13% Similarity=0.217 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccC--CChHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003870 346 DQLETMWETAVAKITSVLEEQFSHM--DSATHLLLVKDYVTLLGATLRQYGYEVGPVLEVLDKSQDKYHELLLEECQQQI 423 (790)
Q Consensus 346 ~~vdelW~~~~~kl~~~l~~~~~~~--~~~~~ll~iK~~i~lf~~tl~~ygy~v~~L~~~L~~l~d~Y~elL~~~~~~~f 423 (790)
..+...=+.+..|+...+...+... ++++..-.++..+.....-. .++...-+.|++.=-+.....|
T Consensus 158 ~~~~~~~e~a~erl~~w~q~e~~~l~~~~~~~~~~l~~al~~L~~rp-----------~lf~~~l~~~~~~R~~~l~~~F 226 (618)
T PF06419_consen 158 EQMSKYLERAYERLYRWVQRECRSLNLDNPEVSPLLRRALRYLRERP-----------VLFNYCLDEFAEARSKALLRRF 226 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccchHHHHHHHHHhcCh-----------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhcCCC-----cccccC--ChHHHHh-hhhhccCCCCCCCCCCCccccCCCchHHHHHHHHHHHHHHHHHhcc----
Q 003870 424 TTVLTNDTY-----EQMLMK--KDTDYEN-NVLLFHLQSSDIMPAFPYIAPFSSMVPDACRIVRSFIKGSVDYLSY---- 491 (790)
Q Consensus 424 ~~il~~D~y-----~Pm~V~--~~eey~~-~v~~~~~~~~~~~~~fP~~lPFS~~vP~~c~~ir~fi~~~~~f~~~---- 491 (790)
...+....- .||.+. |+--|=. ...|-+---+.+ |.|+...+++-+.
T Consensus 227 ~~aLt~g~~~~~~~rPIel~AhDP~RYvGDmLAwvHq~~a~E---------------------~E~l~~Lf~~~~~~~~~ 285 (618)
T PF06419_consen 227 LDALTRGGPGGSPSRPIELHAHDPLRYVGDMLAWVHQAIASE---------------------REFLESLFKFDEDEIAE 285 (618)
T ss_pred HHHHcCCCCCCCCCCchhhhccChHHHHHHHHHHHHHHhhhH---------------------HHHHHHHhccccccccc
Q ss_pred CCcccHH------HHHHHHHHHHHHHHHHHHHHHhhhcCCcChHHHHHHHHhHHHHHHHHHHHHHHHHHHcCCCccccCC
Q 003870 492 GMHANYF------DVLRKYLDKLLIDVLNEVILNTITGGSIGVSQAMQIAANITFLERACDYFLRHAAQLCGIPVRSVQK 565 (790)
Q Consensus 492 ~~~~eid------e~v~ks~d~lL~~~v~~~L~~~i~~~~~~l~qi~QI~iN~~~le~ac~~~e~~~~~l~~~~~~~~~~ 565 (790)
+.....+ +.+.+.+|+.+ ..+|..++.+|.+.-.+-+-.+ ++--+.+| +.+|..-..++.|...
T Consensus 286 ~~~~~~~~~~~~~~~~~~lld~i~-~~l~rplk~RvEQvi~se~~~i-~~yki~~L---L~fY~~~~~k~i~~~s----- 355 (618)
T PF06419_consen 286 GSSSGFDSNPWSEELINELLDRIL-EGLCRPLKIRVEQVISSEEDPI-TLYKIANL---LSFYQMTFSKLIGEDS----- 355 (618)
T ss_pred ccccccccccchHHHHHHHHHHHH-HHHhHHHHHHHHHHHHcCCCcc-HHHHHHHH---HHHHHHHHHHHcCCCc-----
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhccccccCCCC--CcchhHHHHHHHHHHHHHH
Q 003870 566 PQATLMAKVVLKTSRDAAYITLLNLVNTKLDEFMALTENINWTTEDTSQ--NGNEYMNEVIIYLDTLMST 633 (790)
Q Consensus 566 ~~~~l~a~~~f~~~r~~Ae~~I~~lv~~KIdeflel~~~yDW~~~~~~~--~ps~yi~dli~fL~~~f~s 633 (790)
.|. .++++.++.|.++++..++.+++.+... .+..|+. .|..++.|.+.-|.-+|++
T Consensus 356 ---~L~--~tl~~L~~~a~~~f~~~l~~~~~~l~~~------~~~~~~~DL~PP~~l~d~l~~L~~il~~ 414 (618)
T PF06419_consen 356 ---SLI--ETLKELQDLAQKKFFSSLRDHVAKLLRS------APEPPPADLSPPEWLIDFLSLLREILDV 414 (618)
T ss_pred ---hHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhh------CCCCCCCCCCCCHHHHHHHHHHHHHHHH
No 27
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=83.49 E-value=1.1e+02 Score=36.93 Aligned_cols=138 Identities=16% Similarity=0.235 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHH
Q 003870 47 EALLHQLKSVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVGS-------ALLIKLEELLE 119 (790)
Q Consensus 47 ~~~l~~L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~-------~L~~kk~~L~~ 119 (790)
+.+-++++.-|+.|.+|+.+|-..-|-|.++|.|++..|++-++.|-.+|.......+..-. .+.++......
T Consensus 23 r~ve~~ir~~iE~KrEELRqmVGeRYRDLleAADtI~hM~sla~~L~~~I~~t~~ncrsL~a~svA~tp~raeqnp~~e~ 102 (863)
T KOG2033|consen 23 REVEKKIRSVIEGKREELRQMVGERYRDLLEAADTIRHMCSLADKLASDIANTRVNCRSLHANSVAKTPGRAEQNPAGEH 102 (863)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCcchhhcCchhhH
Confidence 45667899999999999999999999999999999999999999999999999888776541 22233323333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHhhHHHHHHhhcCCCCchHHHHHHHhhchhHHHHHH
Q 003870 120 SYAIKKNVTGAIKMGKICVQVLDLCVKCNNHITDGQFYPALKTIDLIEKNYLQIIPVKALKMVIEKTIPVIKTHIE 195 (790)
Q Consensus 120 ~r~v~~nI~eai~~L~~cl~VLel~~k~~e~i~ekkyy~ALktLd~Le~~~L~~v~~~~f~~~i~~sIP~lr~~Ik 195 (790)
.+.+...| --+++.=.++--.+.++.||.|-...=--+|.+=+-+..-. +.++.+..|.++.++.
T Consensus 103 ~Yg~aaqV----------KyLv~~PE~IWg~lD~s~fl~At~ly~~~~Hlq~~liqLds-ss~ll~nfP~l~~Qw~ 167 (863)
T KOG2033|consen 103 LYGTAAQV----------KYLVSSPELIWGHLDSSEFLDATVLYCMVEHLQKQLIQLDS-SSMLLKNFPALTNQWV 167 (863)
T ss_pred HHHHHHHH----------HHHHhCHHHhhccccccchHHHHHHHHHHHHHHHHHhhcCC-CcHHHhhcHHHHHHHH
Confidence 33222221 23455556677788888999886655444444321111110 1157777787776654
No 28
>PF14923 CCDC142: Coiled-coil protein 142
Probab=81.47 E-value=9 Score=44.13 Aligned_cols=84 Identities=18% Similarity=0.332 Sum_probs=67.8
Q ss_pred ccccc---CCCCCcchhHHHHHHHH-HHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhhccCccccccCHHHHHHHHHH
Q 003870 606 NWTTE---DTSQNGNEYMNEVIIYL-DTLMSTAQQILPLDALYKVGSGALEHISNSIVSAFLSDSVKRFNANAVAIINHD 681 (790)
Q Consensus 606 DW~~~---~~~~~ps~yi~dli~fL-~~~f~s~~~~LP~~v~~~~~~~a~~his~~ll~~Ll~~~vk~in~~al~n~~~D 681 (790)
=|-.. +.|..||.|+...+.-+ .-++..+ .+||++....+...++.-+.++-|+.++-..+ ++|..|..|+..|
T Consensus 261 ~WR~~~~~~lP~~pS~Yv~~~v~~vl~PVl~g~-q~L~~~aq~~~l~~~l~a~~eAWLdhIl~~kI-KFS~~GAlQL~~D 338 (450)
T PF14923_consen 261 YWRRSLSPELPSAPSEYVEYVVETVLEPVLQGV-QGLPPEAQIPALSQALTAMLEAWLDHILMHKI-KFSLQGALQLRQD 338 (450)
T ss_pred hhcccCCCCCCCCccHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHHHHccc-eeeHHHHHHHHHH
Confidence 47544 44569999999887765 3445544 58999998888888999999999997775544 5999999999999
Q ss_pred HHHHHHhhhh
Q 003870 682 LKKLEDFSDE 691 (790)
Q Consensus 682 v~~lE~f~~~ 691 (790)
..+..+++.+
T Consensus 339 F~~Vr~wl~~ 348 (450)
T PF14923_consen 339 FGYVRDWLES 348 (450)
T ss_pred HHHHHHHHHh
Confidence 9999999998
No 29
>PRK00794 flbT flagellar biosynthesis repressor FlbT; Reviewed
Probab=69.83 E-value=9.4 Score=36.81 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhhccccHHHhhHHHH
Q 003870 139 QVLDLCVKCNNHITDGQFYPALKTIDLI 166 (790)
Q Consensus 139 ~VLel~~k~~e~i~ekkyy~ALktLd~L 166 (790)
.+.+....+.+++..|+||.|||.+-.|
T Consensus 92 ~~~~~l~~i~~~V~~g~~y~ALk~lR~L 119 (132)
T PRK00794 92 DILAGLKAIDELVEAGRYYEALKALRGL 119 (132)
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHh
Confidence 3457778889999999999999998766
No 30
>PRK12791 flbT flagellar biosynthesis repressor FlbT; Reviewed
Probab=66.60 E-value=8 Score=37.20 Aligned_cols=27 Identities=33% Similarity=0.555 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhhccccHHHhhHHHH
Q 003870 140 VLDLCVKCNNHITDGQFYPALKTIDLI 166 (790)
Q Consensus 140 VLel~~k~~e~i~ekkyy~ALktLd~L 166 (790)
+.+....+.++|..|+||.|||.+-.|
T Consensus 90 ~~~~l~~~~~~v~~g~~Y~ALK~~R~L 116 (131)
T PRK12791 90 AWPIIEAINNHILNGDLYKALKELRKL 116 (131)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 556666778899999999999998776
No 31
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.30 E-value=16 Score=42.10 Aligned_cols=112 Identities=13% Similarity=0.157 Sum_probs=78.9
Q ss_pred HHHHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003870 53 LKSVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVGSALLIKLEELLESYAIKKNVTGAIK 132 (790)
Q Consensus 53 L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~~kk~~L~~~r~v~~nI~eai~ 132 (790)
+-+-|+.-|.+.+.+--.||..|+.+.+++.+|+++--.+-++.-++.+.+......-..-.-.|.+.|..-.+....-.
T Consensus 58 MV~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~f~~me~eMd~L~~~ms~i~~~s~~l~g~L~ekre~I~kLg~~~~ 137 (636)
T KOG2346|consen 58 MVQQIRALDSDMQTLVYENYNKFISATDTIRKMKSNFFGMEQEMDGLEEVMSSIQSKSDGLAGSLFEKRELIKKLGQRPP 137 (636)
T ss_pred HHHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhhhhhhcchhhhHHHHHHHHhhhhccccchhHHhHHHHHHhcCCcc
Confidence 44567888999999999999999999999999999988888776666555442221111111112222333334444555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccHHHhhHH
Q 003870 133 MGKICVQVLDLCVKCNNHITDGQFYPALKTID 164 (790)
Q Consensus 133 ~L~~cl~VLel~~k~~e~i~ekkyy~ALktLd 164 (790)
.+++..-+.++-.++..-++.+.|=.|+|---
T Consensus 138 llrkvqfifdLP~rLrkc~~~~aYG~avR~~~ 169 (636)
T KOG2346|consen 138 LLRKVQFIFDLPRRLRKCGRAPAYGAAVRGSS 169 (636)
T ss_pred chhhhHHHhhhHHHHHHhccccccchhhcccc
Confidence 67778888899999999999999998888643
No 32
>PF07378 FlbT: Flagellar protein FlbT; InterPro: IPR009967 This family consists of several FlbT proteins. FlbT is a post-transcriptional repressor function in flagellum biogenesis. FlbT is associated with the 5' untranslated region (UTR) of fljK (25 kDa flagellin) mRNA and that this association requires a predicted loop structure in the transcript. Mutations within this loop abolish FlbT association and result in increased mRNA stability. It is therefore thought that FlbT promotes the degradation of flagellin mRNA by associating with the 5' UTR [].; GO: 0048027 mRNA 5'-UTR binding, 0006402 mRNA catabolic process, 0045718 negative regulation of flagellum assembly
Probab=64.12 E-value=15 Score=35.20 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhhhccccHHHhhHHHH
Q 003870 137 CVQVLDLCVKCNNHITDGQFYPALKTIDLI 166 (790)
Q Consensus 137 cl~VLel~~k~~e~i~ekkyy~ALktLd~L 166 (790)
.-.+.+....+.+++..|+||.|||.+-.|
T Consensus 88 ~p~~~~~l~~~~~~v~~g~~y~ALk~~R~L 117 (126)
T PF07378_consen 88 DPDAREGLDEANELVEAGRYYKALKALRKL 117 (126)
T ss_pred CHHHHHHHHHHHHHHHCCcHHHHHHHHHHh
Confidence 334677788899999999999999998776
No 33
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=60.51 E-value=1.7e+02 Score=28.32 Aligned_cols=100 Identities=15% Similarity=0.226 Sum_probs=75.1
Q ss_pred hHHHHHHHhcCC--hhHHHHHHHHHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHH
Q 003870 34 GPIVRHAFETGR--PEALLHQLKSVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVGSALL 111 (790)
Q Consensus 34 ~piik~~~~~~~--~~~~l~~L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~ 111 (790)
-||+|.++.... ....+++|+. ..+-++|...-+-|..|.+. |-.+=..|.+.+.+.+..+-.....+.
T Consensus 3 lPilr~~l~~~~~rd~~~leklds------~~~l~Lc~R~Q~HL~~cA~~---Va~~Q~~L~~riKevd~~~~~l~~~~~ 73 (131)
T PF10158_consen 3 LPILRGSLNLPDSRDPEVLEKLDS------RPVLRLCSRYQEHLNQCAEA---VAFDQNALAKRIKEVDQEIAKLLQQMV 73 (131)
T ss_pred cccchhhcCCCCCCChHHHHccCh------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888886653 2346666654 36788998766666666654 445666788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003870 112 IKLEELLESYAIKKNVTGAIKMGKICVQVLD 142 (790)
Q Consensus 112 ~kk~~L~~~r~v~~nI~eai~~L~~cl~VLe 142 (790)
++++.+-+.-..-..|++-...|+.|--.|+
T Consensus 74 erqk~~~k~ae~L~kv~els~~L~~~~~lL~ 104 (131)
T PF10158_consen 74 ERQKRFAKFAEQLEKVNELSQQLSRCQSLLN 104 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888888888888888888888876443
No 34
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=54.71 E-value=1.7e+02 Score=28.93 Aligned_cols=67 Identities=16% Similarity=0.107 Sum_probs=30.3
Q ss_pred chhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003870 71 HYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVGSALLIKLEELLESYAIKKNVTGAIKMGKICVQVLDLCVKC 147 (790)
Q Consensus 71 ~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~~kk~~L~~~r~v~~nI~eai~~L~~cl~VLel~~k~ 147 (790)
+.+++++.+++++..-++..+- -..+.+.+..+....+.|+.-+.--.++ .+.|...|.-.+-...+
T Consensus 15 ~~~~ll~~~~~~~~~l~~l~~~-------~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~---ae~I~~~L~yF~~Ld~i 81 (157)
T PF04136_consen 15 ECDQLLDQTDEILDQLDELQEQ-------YNSVSEKTNSLHEACEQLLEEQTRLEEL---AEEISEKLQYFEELDPI 81 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHhhHHHH
Confidence 4444555555544444333333 3344444555555555555444333333 44444455433333333
No 35
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=52.16 E-value=1.2e+02 Score=26.65 Aligned_cols=64 Identities=11% Similarity=0.076 Sum_probs=46.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHhhHH
Q 003870 98 SDNYRLQEVGSALLIKLEELLESYAIKKNVTGAIKMGKICVQVLDLCVKCNNHITDGQFYPALKTID 164 (790)
Q Consensus 98 ~~n~~Lq~s~~~L~~kk~~L~~~r~v~~nI~eai~~L~~cl~VLel~~k~~e~i~ekkyy~ALktLd 164 (790)
.+|.-+......|-..+. +..++++.+..|-..|..-.++|..+...+++|-...|.++-.-..
T Consensus 12 ~IN~~ie~~~~~L~~a~~---~~~~v~~~~~~t~~LLd~w~~IlSQte~~~~Ll~dp~W~g~~~d~~ 75 (78)
T PF08651_consen 12 KINPVIEGLIETLRSAKS---NMNRVQETVESTNTLLDKWIRILSQTEHTQRLLLDPEWQGASDDIA 75 (78)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCcchhhh
Confidence 334444444444433332 2348899999999999999999999999999999999998755433
No 36
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=51.29 E-value=5.1e+02 Score=31.12 Aligned_cols=166 Identities=18% Similarity=0.254 Sum_probs=119.2
Q ss_pred ChhHHHHHHHHHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHH---------HHHHHHHH
Q 003870 45 RPEALLHQLKSVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVG---------SALLIKLE 115 (790)
Q Consensus 45 ~~~~~l~~L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~---------~~L~~kk~ 115 (790)
+++.-..-|+.|....+...+ =-..-|+.+-..-++|...++...+...++.-+.-++++-- .+|...++
T Consensus 137 ~~~~~r~lLD~f~~~~~~~~~-~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~ 215 (557)
T COG0497 137 KPELQRQLLDAFAGLEELAQE-AYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERK 215 (557)
T ss_pred ChHHHHHHHHHhcCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 344556669999887776662 23456777888888888888888888888888888887766 78999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhh-----hccccHHHhhHHH----HH------HhhcCCC--C
Q 003870 116 ELLESYAIKKNVTGAIKMGKI---CVQVLDLCVKCNNHIT-----DGQFYPALKTIDL----IE------KNYLQII--P 175 (790)
Q Consensus 116 ~L~~~r~v~~nI~eai~~L~~---cl~VLel~~k~~e~i~-----ekkyy~ALktLd~----Le------~~~L~~v--~ 175 (790)
.|.+.-++...+..|.++|.. -..+++...++...+. .++|=++...|++ |+ +.|+..+ .
T Consensus 216 rLsn~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~D 295 (557)
T COG0497 216 RLSNSEKLAEAIQNALELLSGEDDTVSALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFD 295 (557)
T ss_pred HHhhHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999973 3567777777777776 4444444444442 11 1244443 3
Q ss_pred chHHHHHHHhhchhHHHHHHHH--HHHHHHHHHHHHHHH
Q 003870 176 VKALKMVIEKTIPVIKTHIEKK--VTSQFNEWLVHVRSS 212 (790)
Q Consensus 176 ~~~f~~~i~~sIP~lr~~Ik~~--~~~~l~~WL~~IR~~ 212 (790)
..++.+ +..++-.++...++- ...++-+|...+.+-
T Consensus 296 p~~L~~-ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~e 333 (557)
T COG0497 296 PNRLEE-VEERLFALKSLARKYGVTIEDLLEYLDKIKEE 333 (557)
T ss_pred HHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 456666 888888888888776 356777777666655
No 37
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=49.06 E-value=6.4e+02 Score=32.83 Aligned_cols=14 Identities=29% Similarity=0.460 Sum_probs=7.9
Q ss_pred HhhHHHHHHhhcCC
Q 003870 160 LKTIDLIEKNYLQI 173 (790)
Q Consensus 160 LktLd~Le~~~L~~ 173 (790)
|+-|++||..|+.+
T Consensus 1709 l~~l~dLe~~y~~~ 1722 (1758)
T KOG0994|consen 1709 LDRLKDLELEYLRN 1722 (1758)
T ss_pred HHHHHHHHHHHhhh
Confidence 55556666666543
No 38
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.04 E-value=1.1e+02 Score=37.92 Aligned_cols=152 Identities=16% Similarity=0.176 Sum_probs=105.1
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhhccCccccccCHHHHHHHHHHHHHHH
Q 003870 607 WTTEDTSQNGNEYMNEVIIYLDTLMSTAQQILPLDALYKVGSGALEHISNSIVSAFLSDSVKRFNANAVAIINHDLKKLE 686 (790)
Q Consensus 607 W~~~~~~~~ps~yi~dli~fL~~~f~s~~~~LP~~v~~~~~~~a~~his~~ll~~Ll~~~vk~in~~al~n~~~Dv~~lE 686 (790)
|.... ..+|+.-|.-|..=|.+|=.-+-..||+ .+..-+|..+.|++++++= =-..-++++|.+|+..+-..|..+.
T Consensus 817 ~~~~~-s~e~D~~V~aL~k~l~~~e~klk~~L~e-~k~~yIFeGL~hL~s~~LI-~~a~~i~~ln~~~ikkMcRNv~~lQ 893 (982)
T KOG3691|consen 817 VNRDV-SGEPDPSVVALNKDLSTTEEKLKACLNE-WKRRYIFEGLGHLVSSILI-SGAQYIERLNEGGIKKMCRNVSALQ 893 (982)
T ss_pred ecccc-cCCCCHHHHHHHHHHHHHHHHHHhhcCH-HHHHHHHhhHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 54444 6789999999998888776655556774 5556677899999999872 2235689999999999999999998
Q ss_pred HhhhhhcccCCCcccCCcchHHHhhhHHHHHHHHhhcCCCccccchhhh-cccCCCCChhhHHHHHhhhccCCCCccccc
Q 003870 687 DFSDEKFHITGLSEINPEGSFRRCLVEARQLINLLISSQPENFMNPVIR-EKNYNALDYKKVASICEKFKDSPDGIFGSL 765 (790)
Q Consensus 687 ~f~~~~~~~~g~~~~~~~~~L~~~F~ELrQlidLl~s~~~~~y~~~~~R-~~kY~rv~~~~~~~lLeK~~~~~~~~f~~~ 765 (790)
+-.+..- ... +..|.--|+.-+|+. +.+++.++-..- ..+|.-.....+..+.-+ +.+|..
T Consensus 894 Q~Lsnit---------~~r--evdld~ar~fy~ll~-nt~deile~v~d~~~qfse~e~~qllrls~r------S~~g~~ 955 (982)
T KOG3691|consen 894 QILSNIT---------ESR--EVDLDKARRFYELLQ-NTADEILEHVIDARKQFSEPELKQLLRLSYR------SLKGDA 955 (982)
T ss_pred HHHHhcc---------ccc--ccccHHHHHHHHHHh-cCHHHHHHHHHhccccccHHHHHHHHHHHHH------hhcccc
Confidence 8888751 122 345777889999888 677777654443 357887777777666653 344444
Q ss_pred CCccccchhhhhhHH
Q 003870 766 SSRNTKQSSRKKSMD 780 (790)
Q Consensus 766 ~~~~~~~~~rkk~~~ 780 (790)
+ ++++-..+.|+.+
T Consensus 956 k-~~~~~e~~qkl~n 969 (982)
T KOG3691|consen 956 K-RNGRDELLQKLSN 969 (982)
T ss_pred C-CCchHHHHHHHHH
Confidence 4 4454223444443
No 39
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=45.78 E-value=6e+02 Score=30.40 Aligned_cols=169 Identities=17% Similarity=0.217 Sum_probs=107.1
Q ss_pred ChhHHHHHHHHHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHH---------HHHHHHHH
Q 003870 45 RPEALLHQLKSVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVG---------SALLIKLE 115 (790)
Q Consensus 45 ~~~~~l~~L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~---------~~L~~kk~ 115 (790)
+++.-++-|+.|+.- .+..+-....|+++-..-.+|...+....++..++..+..++++.- .+|-...+
T Consensus 142 ~~~~~~~lLD~~~~~--~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~ 219 (563)
T TIGR00634 142 RPDEQRQLLDTFAGA--NEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQ 219 (563)
T ss_pred CHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHH
Confidence 334445557777763 2344445556999999999999999998888888888877766554 67899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHhhhccccHHHhh-----------HHHHHH---hhcCCC--
Q 003870 116 ELLESYAIKKNVTGAIKMGKIC----V-QVLDLCVKCNNHITDGQFYPALKT-----------IDLIEK---NYLQII-- 174 (790)
Q Consensus 116 ~L~~~r~v~~nI~eai~~L~~c----l-~VLel~~k~~e~i~ekkyy~ALkt-----------Ld~Le~---~~L~~v-- 174 (790)
.|.+..++..++..+...|..- - .+++....+...+..- |-+++.. |+++.. .|+..+
T Consensus 220 ~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~l~~~-~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~ 298 (563)
T TIGR00634 220 RLSNLEKLRELSQNALAALRGDVDVQEGSLLEGLGEAQLALASV-IDGSLRELAEQVGNALTEVEEATRELQNYLDELEF 298 (563)
T ss_pred HHhCHHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHh-hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999998888542 1 2555555555555443 3333322 222211 233333
Q ss_pred CchHHHHHHHhhchhHHHHHHHH--HHHHHHHHHHHHHHHhHHHH
Q 003870 175 PVKALKMVIEKTIPVIKTHIEKK--VTSQFNEWLVHVRSSAKDIG 217 (790)
Q Consensus 175 ~~~~f~~~i~~sIP~lr~~Ik~~--~~~~l~~WL~~IR~~s~~IG 217 (790)
...++.. ++.++-.++...++. ...++.+|+..+++.-..+.
T Consensus 299 dp~~L~e-le~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~ 342 (563)
T TIGR00634 299 DPERLNE-IEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLD 342 (563)
T ss_pred CHHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Confidence 2344555 777777666655554 45566666666666544433
No 40
>PRK10869 recombination and repair protein; Provisional
Probab=44.36 E-value=6.3e+02 Score=30.26 Aligned_cols=170 Identities=12% Similarity=0.164 Sum_probs=104.0
Q ss_pred ChhHHHHHHHHHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHH---------HHHHHHHH
Q 003870 45 RPEALLHQLKSVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVG---------SALLIKLE 115 (790)
Q Consensus 45 ~~~~~l~~L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~---------~~L~~kk~ 115 (790)
+++.-+.-|+.|... .+.-+=....|+.+-....+|..++....+...++.-+..++.+-- .+|....+
T Consensus 138 ~~~~~~~lLD~~~~~--~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~ 215 (553)
T PRK10869 138 KPEHQKTLLDAYANE--TSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYK 215 (553)
T ss_pred CHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Confidence 344455557777764 3445555678899999999999999988888888777777776655 77889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHhhh-ccccHHH----h-------hHHHHHH---hhcCC--CCc
Q 003870 116 ELLESYAIKKNVTGAIKMGKI-C-VQVLDLCVKCNNHITD-GQFYPAL----K-------TIDLIEK---NYLQI--IPV 176 (790)
Q Consensus 116 ~L~~~r~v~~nI~eai~~L~~-c-l~VLel~~k~~e~i~e-kkyy~AL----k-------tLd~Le~---~~L~~--v~~ 176 (790)
.|.+..++...+..+.+.|.. . -.+++..+.+...+.+ .+|-+.+ . .|+++.. .|+.. +..
T Consensus 216 ~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp 295 (553)
T PRK10869 216 RLANSGQLLTTSQNALQLLADGEEVNILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDP 295 (553)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCH
Confidence 999999999999988888843 1 1233333333222211 2222222 1 1222211 23332 334
Q ss_pred hHHHHHHHhhchhHHHHHHHH--HHHHHHHHHHHHHHHhHHHH
Q 003870 177 KALKMVIEKTIPVIKTHIEKK--VTSQFNEWLVHVRSSAKDIG 217 (790)
Q Consensus 177 ~~f~~~i~~sIP~lr~~Ik~~--~~~~l~~WL~~IR~~s~~IG 217 (790)
.++.+ |++++-.++.--++- ...++-+|...+++.-..+.
T Consensus 296 ~~l~~-ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~ 337 (553)
T PRK10869 296 NRLAE-LEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLD 337 (553)
T ss_pred HHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 44544 777777776666654 44566666666655544433
No 41
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=42.71 E-value=2e+02 Score=26.58 Aligned_cols=65 Identities=18% Similarity=0.157 Sum_probs=47.1
Q ss_pred HHHHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003870 53 LKSVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVGSALLIKLEELLESYAIKKNVTGAIK 132 (790)
Q Consensus 53 L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~~kk~~L~~~r~v~~nI~eai~ 132 (790)
|...|.+|.+|+|.+| .+|..+..|..++.++...+..-...--.-..-+-+...|-+-|+-|.-
T Consensus 2 l~~ri~eKk~ELe~L~---------------~l~~lS~~L~~qle~L~~kl~~m~dg~e~Va~Vl~NW~nV~r~Is~AS~ 66 (103)
T PF08654_consen 2 LQARIAEKKAELEALK---------------QLRDLSADLASQLEALSEKLETMADGAEAVASVLANWQNVFRAISMASL 66 (103)
T ss_pred HHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhHHHHHHHHHHHHh
Confidence 6788999999998765 5788888999998888888776665555555555566666666655543
No 42
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=39.79 E-value=3.4e+02 Score=25.87 Aligned_cols=104 Identities=16% Similarity=0.154 Sum_probs=85.9
Q ss_pred HHHHHHHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003870 50 LHQLKSVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVGSALLIKLEELLESYAIKKNVTG 129 (790)
Q Consensus 50 l~~L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~~kk~~L~~~r~v~~nI~e 129 (790)
-..+..-+++-...|+.+-..=++.....-+.|+.==.+..++.+-+..++.+++.--.++-.=+.+.+.=.....+...
T Consensus 28 ~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~ 107 (132)
T PF10392_consen 28 ELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTS 107 (132)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44577778888888888888888888888899988888888888888888888888888887777888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 003870 130 AIKMGKICVQVLDLCVKCNNHITD 153 (790)
Q Consensus 130 ai~~L~~cl~VLel~~k~~e~i~e 153 (790)
+.+-|+.+..+|.-+.++-.++++
T Consensus 108 ~L~rl~~t~~LLR~~~r~l~L~~r 131 (132)
T PF10392_consen 108 QLERLHQTSDLLRSVSRFLQLVRR 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888888888888888777653
No 43
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=39.60 E-value=2.2e+02 Score=23.51 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=38.5
Q ss_pred HHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003870 80 DELRGVLVDAEELKSDLSSDNYRLQEVGSALLIKLEELLESYAIKKNVT 128 (790)
Q Consensus 80 ~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~~kk~~L~~~r~v~~nI~ 128 (790)
..+..+..+...|+.++.++.++++....++...++|.-....--.|+.
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4567778888999999999999999999888888887776555555554
No 44
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=35.97 E-value=2.9e+02 Score=24.68 Aligned_cols=36 Identities=6% Similarity=0.182 Sum_probs=22.8
Q ss_pred HHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003870 81 ELRGVLVDAEELKSDLSSDNYRLQEVGSALLIKLEE 116 (790)
Q Consensus 81 ~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~~kk~~ 116 (790)
++.++.++...|+.++.++.+.++.........+++
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~E 60 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSE 60 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666667777777777666666666555555543
No 45
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=34.38 E-value=2e+02 Score=25.67 Aligned_cols=57 Identities=9% Similarity=0.251 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHhhHH
Q 003870 88 DAEELKSDLSSDNYRLQEVGSALLIKLEELLESYAIKKNVTGAIKMGKICVQVLDLCVKCNNHITDGQFYPALKTID 164 (790)
Q Consensus 88 ~~~~L~~~l~~~n~~Lq~s~~~L~~kk~~L~~~r~v~~nI~eai~~L~~cl~VLel~~k~~e~i~ekkyy~ALktLd 164 (790)
...+|..++..++..+++...+....+.+.-.. -+-++|.++.|-+..||..||-|.
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aA--------------------k~EA~RAN~RiDN~~~~~~~~~~~ 81 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAA--------------------KSEANRANTRLDAQDYFDCLRCLR 81 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 455666666666666665555544433333222 235778888888888888888764
No 46
>PF10540 Membr_traf_MHD: Munc13 (mammalian uncoordinated) homology domain; InterPro: IPR019558 Mammalian uncoordinated homology 13 (Munc13) proteins constitute a family of three highly homologous molecules (Munc13-1, Munc13-2 and Munc13-3) with homology to Caenorhabditis elegans unc-13p. Munc13 proteins contain a phorbol ester-binding C1 domain and two C2 domains, which are Ca2+/phospholipid binding domains. Sequence analyses have uncovered two regions called Munc13 homology domains 1 (MHD1) and 2 (MHD2) that are arranged between two flanking C2 domains. MHD1 and MHD2 domains are present in a wide variety of proteins from Arabidopsis thaliana (Mouse-ear cress), C. elegans, Drosophila melanogaster (Fruit fly), Mus musculus (Mouse), Rattus norvegicus (Rat) and Homo sapiens (Human), some of which may function in a Munc13-like manner to regulate membrane trafficking. The MHD1 and MHD2 domains are predicted to be alpha-helical. ; PDB: 3SWH_A.
Probab=33.44 E-value=3.2e+02 Score=26.33 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhhc-cC------------------------ccccccCH
Q 003870 618 EYMNEVIIYLDTLMSTAQQILPLDALYKVGSGALEHISNSIVSAF-LS------------------------DSVKRFNA 672 (790)
Q Consensus 618 ~yi~dli~fL~~~f~s~~~~LP~~v~~~~~~~a~~his~~ll~~L-l~------------------------~~vk~in~ 672 (790)
+.|.-|..||+..++.+-.+|...+..++....++++-..+-+++ +- ..-+..++
T Consensus 2 ~ai~PL~dyLd~nL~~L~~~L~~~~f~~vl~~lW~~vl~~l~~llvlP~ls~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~ 81 (137)
T PF10540_consen 2 DAIEPLMDYLDSNLSILASNLEKENFKRVLKELWKVVLETLEELLVLPPLSDKPMLGLLQSAVSSLSSHGIGGSQRPLTP 81 (137)
T ss_dssp HHHHHHHHHHCHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHTTS-G------------GG-TTS-------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHhhcccccCCCCCH
Confidence 357789999999999888899999999999999999999999988 31 12234455
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 003870 673 NAVAIINHDLKKLEDFSDE 691 (790)
Q Consensus 673 ~al~n~~~Dv~~lE~f~~~ 691 (790)
.-...+..=++.|.+|--+
T Consensus 82 ~q~~~l~~~L~~L~~FFhA 100 (137)
T PF10540_consen 82 KQCDRLFKWLDTLKDFFHA 100 (137)
T ss_dssp TCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 5566666667777777655
No 47
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=31.01 E-value=3.3e+02 Score=28.30 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=25.7
Q ss_pred HHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHH
Q 003870 55 SVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVGSALL 111 (790)
Q Consensus 55 ~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~ 111 (790)
.....||.|+..|- .-+.+-.++.+....|...+..-+..+|+--+.|.
T Consensus 50 ~Ll~~kd~ef~~ll--------kla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK 98 (272)
T KOG4552|consen 50 KLLDSKDDEFKTLL--------KLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLK 98 (272)
T ss_pred HHHHhccHHHHHHH--------HHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34456777776653 33444444555555555555555555554444443
No 48
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=29.58 E-value=7.4e+02 Score=26.71 Aligned_cols=103 Identities=20% Similarity=0.241 Sum_probs=64.3
Q ss_pred hHHHhhhcCCCchhHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHH---HhhhchhHHHHHHHHHHhhhhh--------H
Q 003870 21 LVLATLIGNGDDLGPIVRHAFETGRPEALLHQLKSVVRKKEAEIEE---LCKTHYEEFILAVDELRGVLVD--------A 89 (790)
Q Consensus 21 ~~~~~~~~~~d~l~piik~~~~~~~~~~~l~~L~~~i~~kd~eIE~---iC~~~yq~Fi~sv~~L~~Vr~~--------~ 89 (790)
|++|+....-|.=|..+ ++-.+|++.++-++|-.+-.....|+|+ -|+ +|..-|..|++=.+. .
T Consensus 78 ML~AEGVagPekgga~~-~~Asgg~hsdYR~kL~qiR~iy~~ElekyeqaCn----eftthV~nlL~eQsr~RPi~~ke~ 152 (334)
T KOG0774|consen 78 MLLAEGVAGPEKGGARA-AAASGGDHSDYRAKLLQIRQIYHNELEKYEQACN----EFTTHVMNLLREQSRTRPIMPKEI 152 (334)
T ss_pred HHHHhcccCccccchhh-hhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcccCCCCHHHH
Confidence 88888877766655322 2333567899999999988888888865 565 677777777764433 2
Q ss_pred HHHHHH----HHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003870 90 EELKSD----LSSDNYRL-QEVGSALLIKLEELLESYAIKKNVT 128 (790)
Q Consensus 90 ~~L~~~----l~~~n~~L-q~s~~~L~~kk~~L~~~r~v~~nI~ 128 (790)
..+.+. ...+...| |++.+.++.=++++++.|+-++|-+
T Consensus 153 e~m~~~i~~kF~~iq~~lkqstce~vmiLr~r~ldarRKRRNFs 196 (334)
T KOG0774|consen 153 ERMVQIISKKFSHIQMQLKQSTCEAVMILRSRFLDARRKRRNFS 196 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 333322 23333333 3344566666666777777666664
No 49
>COG5443 FlbT Flagellar biosynthesis regulator FlbT [Cell motility and secretion]
Probab=28.38 E-value=50 Score=31.57 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhhccccHHHhhHHHH
Q 003870 140 VLDLCVKCNNHITDGQFYPALKTIDLI 166 (790)
Q Consensus 140 VLel~~k~~e~i~ekkyy~ALktLd~L 166 (790)
||.-+.++..++.+++||.|||++--|
T Consensus 94 il~~lk~Id~lV~~~~~feALkaiR~l 120 (148)
T COG5443 94 ILAALKRIDGLVMAGRAFEALKAIRGL 120 (148)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHhhh
Confidence 666677788999999999999987654
No 50
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=27.84 E-value=5.8e+02 Score=24.93 Aligned_cols=69 Identities=12% Similarity=0.086 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003870 74 EFILAVDELRGVLVDAEELKSDLSSDNYRLQEVGSALLIKLEELLESYAIKKNVTGAIKMGKICVQVLD 142 (790)
Q Consensus 74 ~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~~kk~~L~~~r~v~~nI~eai~~L~~cl~VLe 142 (790)
.|.+--++|-.++..++.|++.|.++...|+.+......-..+.=+++++...+.+=++.+..-++-|+
T Consensus 4 K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~ 72 (140)
T PF10473_consen 4 KFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLE 72 (140)
T ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778899999999999999999999999999988887777777777777777777777666555444
No 51
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.78 E-value=1.6e+03 Score=29.98 Aligned_cols=118 Identities=15% Similarity=0.155 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHh---hHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 003870 47 EALLHQLKSVVRK---KEAEIEELCKTHYEEFILAVDELRGVLVDAEELK-SDLSSDNYRLQEVGSALLIKLEELLESYA 122 (790)
Q Consensus 47 ~~~l~~L~~~i~~---kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~-~~l~~~n~~Lq~s~~~L~~kk~~L~~~r~ 122 (790)
+.|+..|+..++. +..++++... ......+.+..+........++. .++..+...++....++.....++-+...
T Consensus 694 ~~f~~~L~~~~~~~p~~~~~~~~~~~-~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~ 772 (1311)
T TIGR00606 694 QEFISDLQSKLRLAPDKLKSTESELK-KKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQET 772 (1311)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888888877 4666666655 55556666666655555566664 56888888888888888888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHhhHHHHHHhh
Q 003870 123 IKKNVTGAIKMGKICVQVLDLCVKCNNHITDGQFYPALKTIDLIEKNY 170 (790)
Q Consensus 123 v~~nI~eai~~L~~cl~VLel~~k~~e~i~ekkyy~ALktLd~Le~~~ 170 (790)
....+.+-++.+..+++-+....++...+..-+ +.|++|+...
T Consensus 773 ~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~-----~qie~l~~~l 815 (1311)
T TIGR00606 773 LLGTIMPEEESAKVCLTDVTIMERFQMELKDVE-----RKIAQQAAKL 815 (1311)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHh
Confidence 777777777777777777766676666655432 5555555543
No 52
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=26.58 E-value=1.2e+02 Score=30.11 Aligned_cols=101 Identities=16% Similarity=0.195 Sum_probs=49.9
Q ss_pred cCCCchhHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHH-------HhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 003870 28 GNGDDLGPIVRHAFETGRPEALLHQLKSVVRKKEAEIEE-------LCKTHYEEFILAVDELRGVLVDAEELKSDLSSDN 100 (790)
Q Consensus 28 ~~~d~l~piik~~~~~~~~~~~l~~L~~~i~~kd~eIE~-------iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n 100 (790)
-+++-+.++||.--+ .|...|+.++..-+.+|-+ +-..--...-..+++| |..--++..+..++.
T Consensus 23 ~~~~Ev~~aik~~sd-----~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et~~~L---~k~~Pev~~qa~~l~ 94 (155)
T PF07464_consen 23 QNQQEVVKAIKEQSD-----SVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEETAEKL---RKANPEVEKQANELQ 94 (155)
T ss_dssp --SS-SSHHHHHHHH-----HHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHHHHGG---GG-SHHHHHT-SSSH
T ss_pred CcHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHH---HhcChHHHHHHHHHH
Confidence 455667777776553 4666666666666666554 3333223333333333 333344555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003870 101 YRLQEVGSALLIKLEELLESYAIKKNVTGAIKMGKICV 138 (790)
Q Consensus 101 ~~Lq~s~~~L~~kk~~L~~~r~v~~nI~eai~~L~~cl 138 (790)
..||++...++..-+.+. +.+..|+.++-+.|..-+
T Consensus 95 e~lQ~~vq~l~~E~qk~~--k~v~~~~~~~~e~l~~~~ 130 (155)
T PF07464_consen 95 EKLQSAVQSLVQESQKLA--KEVSENSEGANEKLQPAI 130 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHS---SS-GGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHHHHHH
Confidence 667776666666655554 455555555555554444
No 53
>KOG3821 consensus Heparin sulfate cell surface proteoglycan [Signal transduction mechanisms]
Probab=26.17 E-value=2.5e+02 Score=33.29 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=29.6
Q ss_pred CCCchHHHHHHHHHHHHHHH----HHhccCCcccHHHHHHHHHHHHHHHHH
Q 003870 467 FSSMVPDACRIVRSFIKGSV----DYLSYGMHANYFDVLRKYLDKLLIDVL 513 (790)
Q Consensus 467 FS~~vP~~c~~ir~fi~~~~----~f~~~~~~~eide~v~ks~d~lL~~~v 513 (790)
||..|+..|.+-..++.+++ .|+- ++..+++|+|+...++||-+.+
T Consensus 126 F~~tYg~ly~qn~~~~~dlFtel~~y~~-~~~~nlee~l~eff~~Lf~~~f 175 (563)
T KOG3821|consen 126 FSKTYGSLYPQNAELFNDLFTELKLYYV-GSNVNLEETLNEFFARLFEVMF 175 (563)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHhc-cccCCHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554 4442 3346799999999999885544
No 54
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=25.88 E-value=9.1e+02 Score=26.54 Aligned_cols=120 Identities=13% Similarity=0.087 Sum_probs=77.5
Q ss_pred HHHHHhhHHHHHHHhhhchhHHH-HHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 003870 54 KSVVRKKEAEIEELCKTHYEEFI-LAVDELRGVLVDAEELKSDLSSDNYRLQEVGSAL--LIKLEELLESYAIKKNVTGA 130 (790)
Q Consensus 54 ~~~i~~kd~eIE~iC~~~yq~Fi-~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~~L--~~kk~~L~~~r~v~~nI~ea 130 (790)
-.++++-+.+++++-..-+.+-. .-+.+|..+|.....++..+...+.-++.-.+.- .-.++.-...|.+...+..+
T Consensus 153 ~~~le~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l~dv~~~~~~~ 232 (322)
T COG0598 153 FPVLEQIEDELEAIEDQLLASTTNEELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYLRDVLDHLTQL 232 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHH
Confidence 33344444444444433222211 6788999999999999999988888887777554 44566666778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccHHHhhHHHHHHhhcCC
Q 003870 131 IKMGKICVQVLDLCVKCNNHITDGQFYPALKTIDLIEKNYLQI 173 (790)
Q Consensus 131 i~~L~~cl~VLel~~k~~e~i~ekkyy~ALktLd~Le~~~L~~ 173 (790)
++.+....+.+.-..-+..-+-.-+-=.-+|.|--+--+.+|+
T Consensus 233 ~~~~~~~~~~l~~l~d~~~s~is~~~N~imk~LTi~s~iflPp 275 (322)
T COG0598 233 IEMLEALRERLSSLLDAYLSLINNNQNEIMKILTIVSTIFLPP 275 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888887776655444433333334455555555555554
No 55
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=25.34 E-value=7.8e+02 Score=26.68 Aligned_cols=85 Identities=12% Similarity=0.207 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhc--cccHHHhhHHHHHHhhcC--CCCchHH
Q 003870 105 EVGSALLIKLEELLESYAIKKNVTGAIKMGKICVQ-VLDLCVKCNNHITDG--QFYPALKTIDLIEKNYLQ--IIPVKAL 179 (790)
Q Consensus 105 ~s~~~L~~kk~~L~~~r~v~~nI~eai~~L~~cl~-VLel~~k~~e~i~ek--kyy~ALktLd~Le~~~L~--~v~~~~f 179 (790)
.-+..+-.+|.+|-..|+ -.++|++.-| -.+=|.+|.+-+++- .||--+++|+-|++.|-. +..+-+|
T Consensus 137 ~L~~Kierrk~ElEr~rk-------Rle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~qldd~~rse~~rq 209 (338)
T KOG3647|consen 137 ALGSKIERRKAELERTRK-------RLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFHNLDYLKSQLDDRTRSEPIRQ 209 (338)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHH
Confidence 333444455555554433 2456666655 357788888888763 689999999999887632 2444444
Q ss_pred HHHHHhhchhHHHHHHHH
Q 003870 180 KMVIEKTIPVIKTHIEKK 197 (790)
Q Consensus 180 ~~~i~~sIP~lr~~Ik~~ 197 (790)
-. ..+++|.+.+..++.
T Consensus 210 ee-aensm~~i~ekl~ee 226 (338)
T KOG3647|consen 210 EE-AENSMPFIPEKLIEE 226 (338)
T ss_pred HH-HHhcchhhHHHhhhh
Confidence 44 677788776666544
No 56
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=25.06 E-value=1.2e+03 Score=28.27 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=38.8
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003870 65 EELCKTHYEEFILAVDELRGVLVDAEELKSDLSSD--NYRLQEVGSALLIKLEELLESYAIKKNVTGAIKMGKICV 138 (790)
Q Consensus 65 E~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~--n~~Lq~s~~~L~~kk~~L~~~r~v~~nI~eai~~L~~cl 138 (790)
+.+-......+...++++-.+.....++..+|... ...++..-..+-.-.+++-+++.-...+.+-++.++..+
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i 458 (650)
T TIGR03185 383 QQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAI 458 (650)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334667777777777777777777777653 234444444444444444444444444444444443333
No 57
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=25.04 E-value=3.6e+02 Score=25.06 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccHHHhhHHHHHHhhcCC---C----CchHHHHHHHhhchhHHHHHH
Q 003870 134 GKICVQVLDLCVKCNNHITDGQFYPALKTIDLIEKNYLQI---I----PVKALKMVIEKTIPVIKTHIE 195 (790)
Q Consensus 134 L~~cl~VLel~~k~~e~i~ekkyy~ALktLd~Le~~~L~~---v----~~~~f~~~i~~sIP~lr~~Ik 195 (790)
.+.|-.+.+..+.+.+.|+.+++=.|-+.+++|++.+=.. + ....+- .|..++-.++..|+
T Consensus 22 ~~~~~~i~~~l~~i~~~i~~~dW~~A~~~~~~l~~~W~k~~~~~~~~~~h~eid-~i~~sl~rl~~~i~ 89 (121)
T PF14276_consen 22 NNSTDSIEEQLEQIEEAIENEDWEKAYKETEELEKEWDKNKKRWSILIEHQEID-NIDISLARLKGYIE 89 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhchheeeeecHHHHH-HHHHHHHHHHHHHH
Confidence 3578889999999999999999999999999999976322 1 122233 37777777777777
No 58
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.72 E-value=5.1e+02 Score=29.01 Aligned_cols=117 Identities=22% Similarity=0.323 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHhhH
Q 003870 84 GVLVDAEELKSDLSSDNYRLQEVGSALLIKLEELLESYAIKKNVTGAIKMGKICVQVLDLCVKCNNHITDGQFYPALKTI 163 (790)
Q Consensus 84 ~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~~kk~~L~~~r~v~~nI~eai~~L~~cl~VLel~~k~~e~i~ekkyy~ALktL 163 (790)
+||....+--++...+.++|...-.+|.+-+++|. .....+......|+.-..||. .|+.| ||--+
T Consensus 218 klR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~---~~~etLEqq~~~L~~niDIL~--~k~~e---------al~~~ 283 (365)
T KOG2391|consen 218 KLRRRREEEMERLQAEQESLKRTEEELNIGKQKLV---AMKETLEQQLQSLQKNIDILK--SKVRE---------ALEKA 283 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHH---HHHHHHHHHHHHHHhhhHHHH--HHHHH---------HHhhh
Q ss_pred HHHHHhhc------------CCCCchHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 003870 164 DLIEKNYL------------QIIPVKALKMVIEKTIPVIKTHIEKKVTSQFNEWLVHVRSSAKD 215 (790)
Q Consensus 164 d~Le~~~L------------~~v~~~~f~~~i~~sIP~lr~~Ik~~~~~~l~~WL~~IR~~s~~ 215 (790)
+.|+..-. +-+..|+.--.|++-|=.|.+..++-+. +|..+|.++|-.|+.
T Consensus 284 ~n~~~~~~D~~~~~~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~i-~l~~yLr~VR~lsRe 346 (365)
T KOG2391|consen 284 ENLEALDIDEAIECTAPLYKQILECYALDLAIEDAIYSLGKSLRDGVI-DLDQYLRHVRLLSRE 346 (365)
T ss_pred ccCcCCCchhhhhccchHHHHHHHhhhhhhHHHHHHHHHHHHHhcCee-eHHHHHHHHHHHHHH
No 59
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=24.10 E-value=2.9e+02 Score=33.47 Aligned_cols=60 Identities=20% Similarity=0.273 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHhhHHHHH
Q 003870 108 SALLIKLEELLESYAIKKNV-TGAIKMGKICVQVLDLCVKCNNHITDGQFYPALKTIDLIE 167 (790)
Q Consensus 108 ~~L~~kk~~L~~~r~v~~nI-~eai~~L~~cl~VLel~~k~~e~i~ekkyy~ALktLd~Le 167 (790)
..+....+.+.+..+-...+ ..+......+..+|-....+.++..+|+|-.||..+++|.
T Consensus 472 ~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 472 ERLIELAKEILERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp TSHHHHHHHHHHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 34444444454444333333 2244455566777888889999999999999999999883
No 60
>PRK05287 hypothetical protein; Provisional
Probab=23.65 E-value=4e+02 Score=28.65 Aligned_cols=99 Identities=17% Similarity=0.205 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--
Q 003870 46 PEALLHQLKSVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVGSALLIKLEELLESYAI-- 123 (790)
Q Consensus 46 ~~~~l~~L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~~kk~~L~~~r~v-- 123 (790)
.+.+.++++.++..-+. ..|.-|..++=+|+.|-+.+ +||.+|.. +|-..+..|...+..
T Consensus 21 LE~Lf~ql~~~~~~~~~-------~~h~~~~~~Lfelldv~~R~-DlKsdLlK----------eLerq~~~L~~~~~~p~ 82 (250)
T PRK05287 21 LEFLFQQLTFNLAQDDP-------ADHHVAFRTLFELLDVLERG-DLKSDLLK----------ELERQRQKLQKWRGNPG 82 (250)
T ss_pred HHHHHHHHHHHhcCCcH-------HHHHHHHHHHHHHHHHhhhH-HHHHHHHH----------HHHHHHHHHHHHhcCCC
Confidence 34455555555544332 23446888888888887665 57776543 344445555555444
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHhh
Q 003870 124 --KKNVTGAIKMGKICVQVLDLCVKCNNHITDGQFYPALKT 162 (790)
Q Consensus 124 --~~nI~eai~~L~~cl~VLel~~k~~e~i~ekkyy~ALkt 162 (790)
...+++.++-+..|...|..+.|.++.+++.++..|+|.
T Consensus 83 vd~~~l~~~l~~l~~~~~~L~~~~r~Gq~Lrede~L~siRQ 123 (250)
T PRK05287 83 VDQEALEALLQELEQASAALNAAPRIGQSLREDRFLSSIRQ 123 (250)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHH
Confidence 467888899999999999999999999999999999985
No 61
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=23.58 E-value=7.4e+02 Score=24.64 Aligned_cols=67 Identities=13% Similarity=0.086 Sum_probs=43.4
Q ss_pred hhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Q 003870 84 GVLVDAEELKSDLSSDNYRLQEVGSALLIKLEELLESYAIKKNVTGAIKMGKICVQ-VLDLCVKCNNHIT 152 (790)
Q Consensus 84 ~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~~kk~~L~~~r~v~~nI~eai~~L~~cl~-VLel~~k~~e~i~ 152 (790)
.|+.++..+-.+|......|++....--.+.++.+ ..++.+|.+|.+.|+.--| |-+-++++++-+.
T Consensus 31 aik~~sd~~~~~l~~~~~~l~eeik~~n~~~~e~l--~~~~~kl~et~~~L~k~~Pev~~qa~~l~e~lQ 98 (155)
T PF07464_consen 31 AIKEQSDSVAQQLQNVSSSLQEEIKDANPEAEEAL--KQLKTKLEETAEKLRKANPEVEKQANELQEKLQ 98 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-SSTHHHHH--HHHHHHHHHHHHGGGG-SHHHHHT-SSSHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChhHHHHH--HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 46677888888887777777777655444445554 4678899999999997644 4455555555443
No 62
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=23.58 E-value=1.2e+03 Score=27.20 Aligned_cols=151 Identities=15% Similarity=0.133 Sum_probs=76.1
Q ss_pred hhHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHH
Q 003870 33 LGPIVRHAFETGRPEALLHQLKSVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVGSALLI 112 (790)
Q Consensus 33 l~piik~~~~~~~~~~~l~~L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~~ 112 (790)
+.|++..... +...+++.++.+..+...+.+..|..=+. |...+-++...+. ..+...+.+++......-.
T Consensus 310 ~~plv~~~q~--~~e~~le~l~~~~E~~a~~~~~~~~~L~~-f~~~~~~lwd~h~------~~l~~~e~~l~~~l~~~r~ 380 (473)
T PF14643_consen 310 FLPLVGELQS--EFEEELEKLDKSFEELAKQTEAQSEDLFK-FFQEAAQLWDEHR------KKLSKQEEELEKRLEQCRE 380 (473)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 4577666554 34578888888888888888888876554 5555555544443 2334444444444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHhhHHHHHHhhcCCCCchHHHHHHHhhchhHHH
Q 003870 113 KLEELLESYAIKKNVTGAIKMGKICVQVLDLCVKCNNHITDGQFYPALKTIDLIEKNYLQIIPVKALKMVIEKTIPVIKT 192 (790)
Q Consensus 113 kk~~L~~~r~v~~nI~eai~~L~~cl~VLel~~k~~e~i~ekkyy~ALktLd~Le~~~L~~v~~~~f~~~i~~sIP~lr~ 192 (790)
+-+...+.+. .+++.+++.|+. .-.-.++... +=.|+..|++++..|- .++.-...+...-|.+-.
T Consensus 381 ~~~~~~q~~E--~~Ld~~~d~lRq----~s~ee~L~~~-----l~~~~~~Ld~Ie~~Y~---~fh~~~~~~~~~yP~~i~ 446 (473)
T PF14643_consen 381 KHDQENQEKE--AKLDIALDRLRQ----ASSEEKLKEH-----LEKALDLLDQIEEEYE---DFHKKQTAIVMEYPEMIL 446 (473)
T ss_pred HhHHHHHHHH--HHHHHHHHHHHh----CCCHHHHHHH-----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3333332222 222222222211 1111111111 2257888888988873 222233356666676544
Q ss_pred HHHHHHHHHHHHHH
Q 003870 193 HIEKKVTSQFNEWL 206 (790)
Q Consensus 193 ~Ik~~~~~~l~~WL 206 (790)
..-++-...+...+
T Consensus 447 ~e~~~Y~~~l~~~f 460 (473)
T PF14643_consen 447 KELESYSESLCQFF 460 (473)
T ss_pred HHHHHHHHHHHHHh
Confidence 44444444444443
No 63
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=23.49 E-value=1.7e+03 Score=28.88 Aligned_cols=122 Identities=17% Similarity=0.107 Sum_probs=65.4
Q ss_pred hhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHhhH
Q 003870 84 GVLVDAEELKSDLSSDNYRLQEVGSALLIKLEELLESYAIKKNVTGAIKMGKICVQVLDLCVKCNNHITDGQFYPALKTI 163 (790)
Q Consensus 84 ~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~~kk~~L~~~r~v~~nI~eai~~L~~cl~VLel~~k~~e~i~ekkyy~ALktL 163 (790)
.+.....++.+++.++...++..-+++....+++-.-+.-..++..+|+-.+.-|+.|.-.++ +..-+=|.+.++ .|
T Consensus 405 ~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~-dkvs~FG~~m~~--lL 481 (1074)
T KOG0250|consen 405 QLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKT-DKVSAFGPNMPQ--LL 481 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-chhhhcchhhHH--HH
Confidence 344444445555555555555555555544444433333334444444444444444443322 222223345554 25
Q ss_pred HHHHHhhcC--CCCchHHHHHHHhhchhHHHHHHHHHHHHHHHHHHH
Q 003870 164 DLIEKNYLQ--IIPVKALKMVIEKTIPVIKTHIEKKVTSQFNEWLVH 208 (790)
Q Consensus 164 d~Le~~~L~--~v~~~~f~~~i~~sIP~lr~~Ik~~~~~~l~~WL~~ 208 (790)
..+++.|-. ..|--.+++.|--.=|.....|+.+...-||.|++.
T Consensus 482 ~~I~r~~~~f~~~P~GPlG~~Vtl~~~KWa~aIE~~L~n~lnaFiv~ 528 (1074)
T KOG0250|consen 482 RAIERRKRRFQTPPKGPLGKYVTLKEPKWALAIERCLGNLLNAFIVT 528 (1074)
T ss_pred HHHHHHHhcCCCCCCCCccceeEecCcHHHHHHHHHHHHhhhhheeC
Confidence 555555533 222223566566666899999999999999999973
No 64
>PF07072 DUF1342: Protein of unknown function (DUF1342); InterPro: IPR009777 This family consists of several hypothetical bacterial proteins of around 250 residues in length. Members of this family are often known as YacF after the Escherichia coli protein P36680 from SWISSPROT. The function of this family is unknown.; PDB: 2OEZ_A.
Probab=23.30 E-value=2.4e+02 Score=29.39 Aligned_cols=124 Identities=15% Similarity=0.184 Sum_probs=74.5
Q ss_pred hchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 003870 70 THYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVGSALLIKLEELLESYAI----KKNVTGAIKMGKICVQVLDLCV 145 (790)
Q Consensus 70 ~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~~kk~~L~~~r~v----~~nI~eai~~L~~cl~VLel~~ 145 (790)
..|.-|..+.=+++.|-+.++ +|.+|...= -..+..|...+.. ...+++.+..|..+...|..++
T Consensus 20 ~~~~~al~~Lfellev~~R~D-lK~eLlKEL----------eRq~~~L~~~~~~p~vd~~~l~~~l~~l~~~~~~L~~~~ 88 (211)
T PF07072_consen 20 WDHHAALRALFELLEVLERAD-LKSELLKEL----------ERQRQKLNQWRDNPGVDQEALDALLQELDQALQALQQAP 88 (211)
T ss_dssp THHHHHHHHHHHHHHHHCCS--HHHHHHHHH----------HHHHHHHHCTTT-TTS-HHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhhhhHH-HHHHHHHHH----------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 467889999999999988776 888755322 2223333322222 3456777888888888888888
Q ss_pred -HHHHHhhhccccHHHhhHHHHHHhhcCC----CCchHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003870 146 -KCNNHITDGQFYPALKTIDLIEKNYLQI----IPVKALKMVIEKTIPVIKTHIEKKVTSQFNEWLVHVRSSAKDIG 217 (790)
Q Consensus 146 -k~~e~i~ekkyy~ALktLd~Le~~~L~~----v~~~~f~~~i~~sIP~lr~~Ik~~~~~~l~~WL~~IR~~s~~IG 217 (790)
|++..+++.+|..++|. +...|. .....+--++...- .-| ..+++.|+..+.-....|.
T Consensus 89 gr~gq~Lrene~L~siRQ-----R~~iPGG~C~FDLP~yh~Wl~qp~-~~R-------~~~l~~W~~~l~pl~~ai~ 152 (211)
T PF07072_consen 89 GRIGQHLRENEFLMSIRQ-----RFSIPGGTCSFDLPSYHYWLHQPP-EQR-------QQDLQQWLEPLAPLRDAIT 152 (211)
T ss_dssp -STTHHHHC-HHHHHHHH-----HHCSS----GCC-HHHHHHHTS-H-HHH-------HHHHHHHHHTTHHHHHHHH
T ss_pred chhhhhhhHhHHHHHHHH-----HccCCCCcCCCCcHHHHHHHCCCH-HHH-------HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999985 445554 22223333444331 111 2467889875544444333
No 65
>KOG3745 consensus Exocyst subunit - Sec10p [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.29 E-value=1.5e+03 Score=28.18 Aligned_cols=142 Identities=20% Similarity=0.153 Sum_probs=88.1
Q ss_pred HHHHHHHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003870 50 LHQLKSVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVGSALLIKLEELLESYAIKKNVTG 129 (790)
Q Consensus 50 l~~L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~~kk~~L~~~r~v~~nI~e 129 (790)
+.-|+++...|.+..|.-|+.---++..-|+.|..=-+.+-.+=.++.+--..+..+.-.|..+.+...+.| +|.-+
T Consensus 65 L~~L~e~~qnk~~~~e~~~~~~q~s~~kkv~~lr~k~~~a~~l~~~ld~~~~~v~~~vv~lgq~Le~v~~~r---~r~~~ 141 (763)
T KOG3745|consen 65 LTLLDERYQNKIRMLEEQMSTEQNSYKKKVDKLREKNSTALLLFLQLDDNIFPVSYKVVHLGQQLETVIKPR---SRAVD 141 (763)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccccccccccccHHHHHHHhhhhH---HHHHH
Confidence 344677778888888888886666777777777777777777666665555555555556666666666666 78888
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHhhhccccHHHhhHHHHHHhhc--CCCCchHHHHHHHhhchhHHHHHH
Q 003870 130 AIKMGKICVQVLDLC-VKCNNHITDGQFYPALKTIDLIEKNYL--QIIPVKALKMVIEKTIPVIKTHIE 195 (790)
Q Consensus 130 ai~~L~~cl~VLel~-~k~~e~i~ekkyy~ALktLd~Le~~~L--~~v~~~~f~~~i~~sIP~lr~~Ik 195 (790)
|.+.++--..-+... .-+...|+...+=.=|..-+-+.+.|+ +.++.-.|++ ....||..-+..+
T Consensus 142 a~~lir~~~eF~s~~~~~i~s~i~~~~~~k~leaa~~~~kLl~isnel~~~~f~~-tka~I~k~~~~lE 209 (763)
T KOG3745|consen 142 AQELIRYYNEFLSGGRQYINSDIFTSAFDKNLEAADRIKKLLLISNELPYGKFSE-TKARIEKKYEVLE 209 (763)
T ss_pred HHHHHHHHHHHhccCchhHHHHHhcChhhhHHHHHHHHHHHHHHhccCCcchhHH-HHHHHHHHHHHHH
Confidence 888887777666665 456666666553333445555555443 3344445555 4444444444444
No 66
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=21.78 E-value=9.3e+02 Score=25.27 Aligned_cols=95 Identities=13% Similarity=0.088 Sum_probs=48.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 003870 78 AVDELRGVLVDAEELKSDLSSDNYRLQEVGS---ALLIKLEELLESYAIKKNVTGAIKMGKICVQVLDLCVKCNNHITDG 154 (790)
Q Consensus 78 sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~---~L~~kk~~L~~~r~v~~nI~eai~~L~~cl~VLel~~k~~e~i~ek 154 (790)
...++..+|.....++..+.....-++.... ......+.....+.+...+....+.+..+...++.......-...-
T Consensus 149 ~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 228 (292)
T PF01544_consen 149 LLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPFISDEDKEYLRDLLDRIERLLERAESLRERLESLQDLYQSKLSN 228 (292)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666677776666666555543332 1111222223355566666666666666665555554444444333
Q ss_pred cccHHHhhHHHHHHhhcC
Q 003870 155 QFYPALKTIDLIEKNYLQ 172 (790)
Q Consensus 155 kyy~ALktLd~Le~~~L~ 172 (790)
+-=..+|.|--+--+.+|
T Consensus 229 ~~n~~m~~LT~~t~iflP 246 (292)
T PF01544_consen 229 RQNRVMKVLTIVTAIFLP 246 (292)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344455444444444
No 67
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=21.37 E-value=1.1e+03 Score=25.97 Aligned_cols=26 Identities=4% Similarity=-0.047 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003870 126 NVTGAIKMGKICVQVLDLCVKCNNHI 151 (790)
Q Consensus 126 nI~eai~~L~~cl~VLel~~k~~e~i 151 (790)
.|.+..+..+.|+.-+.-..++.+..
T Consensus 245 ~i~~~~~~k~~l~~eI~e~~~~~~~~ 270 (325)
T PF08317_consen 245 KIEELEEQKQELLAEIAEAEKIREEC 270 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444433
No 68
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.50 E-value=9.5e+02 Score=24.79 Aligned_cols=41 Identities=20% Similarity=0.140 Sum_probs=28.0
Q ss_pred HhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHH
Q 003870 67 LCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVG 107 (790)
Q Consensus 67 iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~ 107 (790)
.|......|+++++++...-.+...+.+.+......|+...
T Consensus 34 ~~~~a~~~F~~~l~d~~~~~~gd~~i~~~L~kF~~~l~ei~ 74 (200)
T cd07637 34 AYATTNKLFVSGIRDLSQQCKKDEMISECLDKFGDSLQEMV 74 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 56677888999999988877776655555555555554443
No 69
>PRK03918 chromosome segregation protein; Provisional
Probab=20.12 E-value=1.8e+03 Score=27.75 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 003870 188 PVIKTHIEKKVTSQFNEWLV 207 (790)
Q Consensus 188 P~lr~~Ik~~~~~~l~~WL~ 207 (790)
|.++..+....-..++.++.
T Consensus 735 ~~l~~~~~~~l~~~~~~if~ 754 (880)
T PRK03918 735 ALLKERALSKVGEIASEIFE 754 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555554444333344443
Done!