Query 003870
Match_columns 790
No_of_seqs 134 out of 219
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 06:44:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003870.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003870hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a2f_X Exocyst complex compone 100.0 1.2E-81 4.1E-86 680.3 29.1 317 397-726 2-321 (325)
2 3fhn_A Protein transport prote 98.1 0.035 1.2E-06 65.3 43.9 354 316-740 275-677 (706)
3 3hr0_A COG4; conserved oligome 97.8 0.0012 4.1E-08 69.2 20.7 210 529-752 17-248 (263)
4 2fji_1 Exocyst complex compone 96.8 0.84 2.9E-05 50.3 31.8 179 573-782 180-366 (399)
5 3swh_A MUNC13-1, protein UNC-1 96.3 0.41 1.4E-05 51.9 21.7 106 614-725 208-328 (341)
6 2f6h_X Myosin-2, type V myosin 96.2 0.19 6.6E-06 56.0 19.3 130 616-757 200-330 (419)
7 3mmi_A Myosin-4; globular tail 95.4 0.53 1.8E-05 51.5 18.3 133 614-759 182-315 (386)
8 3n1e_A Vacuolar protein sortin 91.9 2.6 8.9E-05 39.7 13.2 108 576-692 17-126 (141)
9 2b1e_A Exocyst complex compone 54.2 2.9E+02 0.0099 31.5 18.8 250 124-415 2-286 (564)
10 3ghg_A Fibrinogen alpha chain; 40.8 3.1E+02 0.01 30.9 13.6 32 51-83 60-91 (562)
11 1zva_A E2 glycoprotein; membra 37.1 79 0.0027 26.2 6.1 70 51-133 3-75 (77)
12 3hd7_B Syntaxin-1A; membrane p 28.0 3.1E+02 0.011 24.1 11.5 78 55-140 14-95 (109)
13 2qk2_A LP04448P; mini spindles 27.2 4.3E+02 0.015 25.5 11.6 74 121-195 112-186 (242)
14 2xdj_A Uncharacterized protein 26.3 2.9E+02 0.01 23.3 9.0 52 60-111 7-58 (83)
15 3trt_A Vimentin; cytoskeleton, 23.6 3E+02 0.01 22.3 8.6 53 53-105 18-74 (77)
16 1s94_A S-syntaxin; three helix 22.4 4.5E+02 0.015 24.8 10.1 58 53-118 48-105 (180)
17 2f6m_B Vacuolar protein sortin 20.3 1.4E+02 0.0048 26.6 5.3 41 155-195 33-74 (109)
No 1
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=100.00 E-value=1.2e-81 Score=680.27 Aligned_cols=317 Identities=22% Similarity=0.374 Sum_probs=282.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccccCChHHHHhhhhhccCCCCCCC-CCCCccccCCCchHHHH
Q 003870 397 VGPVLEVLDKSQDKYHELLLEECQQQITTVLTNDTYEQMLMKKDTDYENNVLLFHLQSSDIM-PAFPYIAPFSSMVPDAC 475 (790)
Q Consensus 397 v~~L~~~L~~l~d~Y~elL~~~~~~~f~~il~~D~y~Pm~V~~~eey~~~v~~~~~~~~~~~-~~fP~~lPFS~~vP~~c 475 (790)
|++|+++|+++||+|+++|+++|+++|++|+++|+|+||+|+|++||++++..||+++++.. ++||++||||+|||+||
T Consensus 2 V~~L~~~L~~l~d~Y~elLl~~~~~~f~~il~~D~y~Pm~V~~~eey~~v~~~~~~~~~~~~~~~fP~~lPFS~~vP~~c 81 (325)
T 2a2f_X 2 VNILWELLHNMRDHYNEVLLQRWVHVFREILDKEQFLPMVVQNTEEYECIIERFPFHSEQLENAPFPKKFPFSRMVPEVY 81 (325)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCCCHHHHHHHHTTSCCCCCCCC----CCCSSSBTHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCHHHHHHHHhcCCCCCcccccCCCCcccCccHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999776643 68999999999999999
Q ss_pred HHHHHHHHHHHHHhcc--CCcccHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcChHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003870 476 RIVRSFIKGSVDYLSY--GMHANYFDVLRKYLDKLLIDVLNEVILNTITGGSIGVSQAMQIAANITFLERACDYFLRHAA 553 (790)
Q Consensus 476 ~~ir~fi~~~~~f~~~--~~~~eide~v~ks~d~lL~~~v~~~L~~~i~~~~~~l~qi~QI~iN~~~le~ac~~~e~~~~ 553 (790)
++||+||++||+|+++ +.++|+||+|||++|+||++++|++|.++|+++++|++|+|||+||++|||.||++|+.+++
T Consensus 82 ~~ir~fi~~~~~F~~~~~~~~~eidd~lrks~d~LL~~~v~~~L~~~i~~~~~~l~qi~Qi~iNl~~le~ac~~le~~l~ 161 (325)
T 2a2f_X 82 HQAKEFMYACMKFAEELTLSPNEVAAMVRKAANLLLTRSFSGCLSVVFRQPSITLTQLIQIIIDTQYLEKAGPFLDEFVC 161 (325)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999996 45689999999999999999999999999999889999999999999999999999999999
Q ss_pred HHcCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhccccccCCCCCcchhHHHHHHHHHHHHHH
Q 003870 554 QLCGIPVRSVQKPQATLMAKVVLKTSRDAAYITLLNLVNTKLDEFMALTENINWTTEDTSQNGNEYMNEVIIYLDTLMST 633 (790)
Q Consensus 554 ~l~~~~~~~~~~~~~~l~a~~~f~~~r~~Ae~~I~~lv~~KIdeflel~~~yDW~~~~~~~~ps~yi~dli~fL~~~f~s 633 (790)
+.+|.+.+ .+++|++.|+++|++||++|+++|++||||||+ +++|||+|++++++||+||.|++.||++||++
T Consensus 162 ~~~~~~~~------~~l~a~~~f~~~r~~Ae~~I~~~v~~KIDdfl~-la~yDW~~~~~~~~ps~yi~dli~fL~~~f~s 234 (325)
T 2a2f_X 162 HMTNTERS------VSQTPSAMFHVARQDAEKQVGLRICSKIDEFFE-LSAYDWLLVEPPGIASAFITDMISYLKSTFDS 234 (325)
T ss_dssp HHHTCCC-------------CCSCCCTTHHHHHHHHHHHHHHHHHHT-TCCTTCC----CCSCCHHHHHHHHHHHHHHHT
T ss_pred HHhCCCcc------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccCCCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 99987642 247799999999999999999999999999998 79999999999999999999999999999995
Q ss_pred HhhhCCHHHHHHHHHHHHHHHHHHHHhhccCccccccCHHHHHHHHHHHHHHHHhhhhhcccCCCcccCCcchHHHhhhH
Q 003870 634 AQQILPLDALYKVGSGALEHISNSIVSAFLSDSVKRFNANAVAIINHDLKKLEDFSDEKFHITGLSEINPEGSFRRCLVE 713 (790)
Q Consensus 634 ~~~~LP~~v~~~~~~~a~~his~~ll~~Ll~~~vk~in~~al~n~~~Dv~~lE~f~~~~~~~~g~~~~~~~~~L~~~F~E 713 (790)
+.+||+++++.+||+||+|||++||++|++++||+||++||+||++||+|||+||+++ |++|+ +.++|+++|+|
T Consensus 235 -l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~av~~~~~Dv~~lE~fa~~~-~v~~l----~~~~L~~~F~e 308 (325)
T 2a2f_X 235 -FAFKLPHIAQAACRRTFEHIAEKIYSIMYDEDVKQISTGALTQINLDLMQCEFFAASE-PVPGL----KEGELSKYFLR 308 (325)
T ss_dssp -TTTTSHHHHHHHHHHHHHHHHHHHHHHHTC------CCTTHHHHHHHHHHHHHHHTTC-SSSSC----CSSTTGGGGHH
T ss_pred -HHcCCHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHHHHHHhC-CCCCc----ccchHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999998 88888 57899999999
Q ss_pred HHHHHHHhhcCCC
Q 003870 714 ARQLINLLISSQP 726 (790)
Q Consensus 714 LrQlidLl~s~~~ 726 (790)
||||+|||+++..
T Consensus 309 LrQli~Ll~~~~~ 321 (325)
T 2a2f_X 309 NRQLLDLLILEHH 321 (325)
T ss_dssp HHHHHHHHHCC--
T ss_pred HHHHHHHHHhhhc
Confidence 9999999999864
No 2
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=98.11 E-value=0.035 Score=65.25 Aligned_cols=354 Identities=16% Similarity=0.228 Sum_probs=197.8
Q ss_pred HHHHHHHHHHhhHH--hhhHHHHhhhCCCCChhhHHHHHHHHHHHHHHHHHHHhc---cCCChHHHHHHHHHHHHHHHHh
Q 003870 316 ESYQTFLAQIAGYF--IVEDRVLRTAGGLLLPDQLETMWETAVAKITSVLEEQFS---HMDSATHLLLVKDYVTLLGATL 390 (790)
Q Consensus 316 ~~l~~yl~~I~GFF--vvE~~vl~tt~~l~s~~~vdelW~~~~~kl~~~l~~~~~---~~~~~~~ll~iK~~i~lf~~tl 390 (790)
+.+.+|++.++... +..+ +..|+ +..++ +...+..+.+.+++-+. .+.++..+-.+-.-++.|-..|
T Consensus 275 ~Fl~~~lq~~L~~~~~~f~d----~~~~~-~~~~~---~~eFI~~LL~~vreKl~~~l~~~d~~lLsHlI~Ell~FD~~L 346 (706)
T 3fhn_A 275 QFLNDYLAENLYKCINIFHD----DCNGL-TKPVI---HEQFINYVLQPIRDKVRSTLFQNDLKTLIVLISQILATDKNL 346 (706)
T ss_dssp HHHHHHHHHHHHHHHHHHCB----GGGTB-CHHHH---HHHHHHHHSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc----ccccc-chhHH---HHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHHHHHHHHH
Confidence 55666666665543 1111 22233 33333 24455555555555544 1278999999999999999999
Q ss_pred h-hcCCCchhHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhcCCCcccccCChHHHHhhhhhccCCCCCCCCCCCccccCC
Q 003870 391 R-QYGYEVGPVLEVL-DKSQDKYHELLLEECQQQITTVLTNDTYEQMLMKKDTDYENNVLLFHLQSSDIMPAFPYIAPFS 468 (790)
Q Consensus 391 ~-~ygy~v~~L~~~L-~~l~d~Y~elL~~~~~~~f~~il~~D~y~Pm~V~~~eey~~~v~~~~~~~~~~~~~fP~~lPFS 468 (790)
+ .|||+-..|..++ ...|++.-+.=.+-.-.+|..|+++.+ .|
T Consensus 347 r~~~~Y~~~Gl~~li~~~~f~~WL~~Ek~fA~~rf~~Ii~s~d--~l--------------------------------- 391 (706)
T 3fhn_A 347 LNSFHYHGLGLVSLISDEVWEKWINYEVEMANRQFINITKNPE--DF--------------------------------- 391 (706)
T ss_dssp HHHTCCCSCCGGGGSCHHHHHHHHHHHHHHHHHHHHHTTSSGG--GG---------------------------------
T ss_pred HHhcCCCCCcchhcccHHHHHHHHHHHHHHHHHHHHHHHhCCc--cC---------------------------------
Confidence 6 4999965554432 477888888777778888999887644 11
Q ss_pred CchHHHHHHHHHHHHHHHHHhccCC--ccc-HHHHHHHHHHHHHHHHHHHHHHHhhhcCC-c----ChH-HHHHHHHhHH
Q 003870 469 SMVPDACRIVRSFIKGSVDYLSYGM--HAN-YFDVLRKYLDKLLIDVLNEVILNTITGGS-I----GVS-QAMQIAANIT 539 (790)
Q Consensus 469 ~~vP~~c~~ir~fi~~~~~f~~~~~--~~e-ide~v~ks~d~lL~~~v~~~L~~~i~~~~-~----~l~-qi~QI~iN~~ 539 (790)
|.|-..+...++....|++.++ .+. +-..=.|....+-.+ +-+....++.+++ + +.+ +..|-+ .
T Consensus 392 ---t~sA~~~~~LLe~It~~l~~~~~~rY~~L~~~~~Kl~f~Iqiq-L~d~Y~~~L~~~s~lgr~~tke~~~~~g~---~ 464 (706)
T 3fhn_A 392 ---PKSSQNFVKLINKIYDYLEPFYDLDFDLLVRYKLMTCSLIFMN-LTSSYLDYILTVDSLNETRTKEQELYQTM---A 464 (706)
T ss_dssp ---GGHHHHHHHHHHHHHHHHSHHHHCCCGGGGHHHHHHHHHHHHH-HHHHHHHHHHTCCCSCSEEEHHHHHHHHH---H
T ss_pred ---CHHHHHHHHHHHHHHHhccccchhhcccccchHHHHHHHHHHh-hHHHHHHHHhCccccccccchHHHHHHHH---H
Confidence 2344555555555554443211 000 101111111111111 1122222222211 1 111 122222 1
Q ss_pred HHHHHHHHH------------HH---HHHHHcCCCccccCCccchh-hHHHHHHHHHHH-HHHHHHHHHHhhHHHHHhhh
Q 003870 540 FLERACDYF------------LR---HAAQLCGIPVRSVQKPQATL-MAKVVLKTSRDA-AYITLLNLVNTKLDEFMALT 602 (790)
Q Consensus 540 ~le~ac~~~------------e~---~~~~l~~~~~~~~~~~~~~l-~a~~~f~~~r~~-Ae~~I~~lv~~KIdeflel~ 602 (790)
-|+..|--+ .. .+...++. ...+-+ ...+.++..++. ++..|...+..=+.+-+-
T Consensus 465 ~L~~L~~V~~~L~dWsddvfFLeLw~~l~~~t~s------~~gSIFDetIs~Y~~L~~~~~~~~Iv~~v~~eik~~lK-- 536 (706)
T 3fhn_A 465 KLQHVNFVYRKIKSLSSNFIFIQLTDIVNSTESK------KYNSLFQNVENDYEKAMSTDMQNSIVHRIQKLLKETLR-- 536 (706)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHTTC------CCSCTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTH--
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHhcccCc------ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 222222111 10 01111111 111222 356678888888 888888888777777654
Q ss_pred hhc---cccccCC--------CCCcchhHHHHHHHHHHHHHHHhhh-CCHHHHHHHHHHHHHHHHHHHHhhccCcccccc
Q 003870 603 ENI---NWTTEDT--------SQNGNEYMNEVIIYLDTLMSTAQQI-LPLDALYKVGSGALEHISNSIVSAFLSDSVKRF 670 (790)
Q Consensus 603 ~~y---DW~~~~~--------~~~ps~yi~dli~fL~~~f~s~~~~-LP~~v~~~~~~~a~~his~~ll~~Ll~~~vk~i 670 (790)
+|+ .|..... .-.||.-+..++..|...++.+... ||......++...+.-|...|++-++- .-++
T Consensus 537 ~Y~k~s~W~s~~~~~~~~~~~~lspSaEL~~~L~~L~~~L~~L~~~lL~~~~f~~IwR~ia~~Ld~yL~e~IL~--~nkF 614 (706)
T 3fhn_A 537 NYFKISTWSTLEMSVDENIGPSSVPSAELVNSINVLRRLINKLDSMDIPLAISLKVKNELLNVIVNYFTESILK--LNKF 614 (706)
T ss_dssp HHHHCCGGGTCCCC------CCCCCCGGGHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHTTTT--TSCB
T ss_pred HHhCcccCcccCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHh--cCcc
Confidence 232 4964321 1346889999999999999988877 699999999999999999998874443 4589
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhcccCCCcccCCcchHHHhhhHHHHHHHHhhcC---CCccccch-hhhcccCC
Q 003870 671 NANAVAIINHDLKKLEDFSDEKFHITGLSEINPEGSFRRCLVEARQLINLLISS---QPENFMNP-VIREKNYN 740 (790)
Q Consensus 671 n~~al~n~~~Dv~~lE~f~~~~~~~~g~~~~~~~~~L~~~F~ELrQlidLl~s~---~~~~y~~~-~~R~~kY~ 740 (790)
|.+|+.||..|+.+|-.-.. . | . +. -...|..|+..+-||.-. +.++|+.. ++....|.
T Consensus 615 S~~Ga~Qf~~D~~~L~~v~~-l-p--~-----~~--~~~~~~~L~E~l~LL~L~~d~~~~~f~~~~y~~~~~~~ 677 (706)
T 3fhn_A 615 NQNGLNQFLHDFKSLSSILS-L-P--S-----HA--TNYKCMSLHELVKILKLKYDPNNQQFLNPEYIKTGNFT 677 (706)
T ss_dssp CHHHHHHHHHHHHHHHTTSC-C-C--T-----TC--CCHHHHHHHHHHHHHGGGGCGGGTTTTSHHHHHHCCCS
T ss_pred CHHHHHHHHHHHHHHHHHhc-C-C--C-----cc--hhhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChH
Confidence 99999999999998744333 1 2 1 11 113456666666666433 33456543 33344454
No 3
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=97.84 E-value=0.0012 Score=69.20 Aligned_cols=210 Identities=10% Similarity=0.125 Sum_probs=146.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHcC-----CCccccCC-----ccc---hhh-HHHHHHHHHHHHHHHHH-HHHHh
Q 003870 529 SQAMQIAANITFLERACDYFLRHAAQLCG-----IPVRSVQK-----PQA---TLM-AKVVLKTSRDAAYITLL-NLVNT 593 (790)
Q Consensus 529 ~qi~QI~iN~~~le~ac~~~e~~~~~l~~-----~~~~~~~~-----~~~---~l~-a~~~f~~~r~~Ae~~I~-~lv~~ 593 (790)
..+.+.++-+..++.|++|+.....++.. -|...... -.. .+. ....|++.-+.+-+.+| ..+..
T Consensus 17 ~~~~~Flv~LNnld~s~eyi~rL~~~l~~~l~~~Fp~~~d~~~~~~kv~~~l~~l~~~~~k~~~ll~~gi~~Lf~~~ikp 96 (263)
T 3hr0_A 17 EAKMSFLVTLNNVEVCSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAAVSNKFRDLLQEGLTELNSTAIKP 96 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHhhHhheeccHHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45667778888888888888865443311 01100000 000 111 22345566666666776 57788
Q ss_pred hHHHHHhhhhhccccccCC----CCCcchhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhhccCccccc
Q 003870 594 KLDEFMALTENINWTTEDT----SQNGNEYMNEVIIYLDTLMSTAQQILPLDALYKVGSGALEHISNSIVSAFLSDSVKR 669 (790)
Q Consensus 594 KIdeflel~~~yDW~~~~~----~~~ps~yi~dli~fL~~~f~s~~~~LP~~v~~~~~~~a~~his~~ll~~Ll~~~vk~ 669 (790)
||--+++.+..++..+++. ...-.+++..++.=++..+......|-++....+..-++.+|+..+-..+.. ++
T Consensus 97 rLr~~l~~f~~~~y~l~eee~~~~e~~d~~~~~F~~~w~~ll~p~k~~Lt~~~y~~Ll~~~~~~la~~lE~~i~~---~~ 173 (263)
T 3hr0_A 97 QVQPWINSFFSVSHNIEEEEFNDYEANDPWVQQFILNLEQQMAEFKASLSPVIYDSLTGLMTSLVAVELEKVVLK---ST 173 (263)
T ss_dssp HHHHHHHGGGGSCBSCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTT---CC
T ss_pred HHHHHHHHHhcccccCCHhHHhhhhcccHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHh---CC
Confidence 8887776555555555421 0111247888888888888877777778888888888999999999988875 78
Q ss_pred cCHHHHHHHHHHHHHHHHhhhhhcccCCCcccCCcchHHHhhhHHHHHHHHhhcCCCccccc---hhhhcccCCCCChhh
Q 003870 670 FNANAVAIINHDLKKLEDFSDEKFHITGLSEINPEGSFRRCLVEARQLINLLISSQPENFMN---PVIREKNYNALDYKK 746 (790)
Q Consensus 670 in~~al~n~~~Dv~~lE~f~~~~~~~~g~~~~~~~~~L~~~F~ELrQlidLl~s~~~~~y~~---~~~R~~kY~rv~~~~ 746 (790)
+|.-|--+|+.||..+-.|+.+. +.-.+++.|+-|-|++-||--++|++-.+ +....-.+ +++|..
T Consensus 174 fn~lGal~LdrDvr~li~~~~~~----------~~~~lRekF~RL~QI~~lLnle~~eev~d~~~~~~~~~~W-~Ls~~E 242 (263)
T 3hr0_A 174 FNRLGGLQFDKELRSLIAYLTTV----------TTWTIRDKFARLSQMATILNLERVTEILDYWGPNSGPLTW-RLTPAE 242 (263)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHTT----------SCTTHHHHTHHHHHHHHHHTCSSGGGGGGTSGGGGTTCCC-CSCHHH
T ss_pred cCchhHHHHHHHHHHHHHHHHhc----------cchhhhHHHHHHHHHHHHHcCCChHHHHHHhcccCCCccc-cCCHHH
Confidence 99999999999999999998763 34679999999999999999999987644 32222455 689999
Q ss_pred HHHHHh
Q 003870 747 VASICE 752 (790)
Q Consensus 747 ~~~lLe 752 (790)
...++.
T Consensus 243 ~r~il~ 248 (263)
T 3hr0_A 243 VRQVLA 248 (263)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 888876
No 4
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.84 Score=50.33 Aligned_cols=179 Identities=10% Similarity=0.088 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhccccccCCCCCcchhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHH
Q 003870 573 KVVLKTSRDAAYITLLNLVNTKLDEFMALTENINWTTEDTSQNGNEYMNEVIIYLDTLMSTAQQILPLDALYKVGSGALE 652 (790)
Q Consensus 573 ~~~f~~~r~~Ae~~I~~lv~~KIdeflel~~~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~~~~LP~~v~~~~~~~a~~ 652 (790)
...|.+..+.|-..+.+.|-..+...+..+---.|... .++..++.=++.-+.-+...|.+...+.++..+.+
T Consensus 180 ~~~f~~l~~~~~~~L~~~if~dl~p~~~~lft~~W~~~-------~~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~~~~ 252 (399)
T 2fji_1 180 LDGFAEVAQCSSLGLITLMFDDLRKPYQEIFSKTWYMG-------SQAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIG 252 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHTTTTSGGGTTC-------CHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhcCC-------cHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 45688888888888888888888887764435688542 18888888888888877678999999999999999
Q ss_pred HHHHHHHhhccCccccccC---HHHHHHHHHHHHHHHHhhhhhcccCCCcccCCcch----HHHhhhHHHHHHHHhhcCC
Q 003870 653 HISNSIVSAFLSDSVKRFN---ANAVAIINHDLKKLEDFSDEKFHITGLSEINPEGS----FRRCLVEARQLINLLISSQ 725 (790)
Q Consensus 653 his~~ll~~Ll~~~vk~in---~~al~n~~~Dv~~lE~f~~~~~~~~g~~~~~~~~~----L~~~F~ELrQlidLl~s~~ 725 (790)
++....+..|.. -.+++ ..|...+..|+..+.+|.....+ .... +...|.-|.++.+ +..+.
T Consensus 253 ~~v~~Yl~~l~~--~~~~~~~~~~~~~~l~~D~~~l~~~f~~~~~--------~~~~~~~~v~~~~~~l~~l~~-L~~d~ 321 (399)
T 2fji_1 253 ETIIKFLTALSF--EHSFKNKNNKFLEAMKRDFEIFYQLFVKVLD--------GNESKDTLITQNFTVMEFFMD-LSCEP 321 (399)
T ss_dssp HHHHHHHHGGGG--CCCCCCGGGHHHHHHHHHHHHHHHHHHHHTT--------TCTTHHHHHHHHHHHHHHHHH-HHHSC
T ss_pred HHHHHHHHHHhc--CCCCCchhHHHHHHHHHHHHHHHHHHHHhcc--------ccchhhHHHHHHHHHHHHHHH-hcCCc
Confidence 999999998875 44566 89999999999999999887621 1121 7788999999999 88755
Q ss_pred Cccccchhhhc-ccCCCCChhhHHHHHhhhccCCCCcccccCCccccchhhhhhHHHH
Q 003870 726 PENFMNPVIRE-KNYNALDYKKVASICEKFKDSPDGIFGSLSSRNTKQSSRKKSMDML 782 (790)
Q Consensus 726 ~~~y~~~~~R~-~kY~rv~~~~~~~lLeK~~~~~~~~f~~~~~~~~~~~~rkk~~~~~ 782 (790)
++.+.+...-. +.|+.+.++.+..||. +| += ++ .+++|.+++.+
T Consensus 322 ~~~i~~~~~~l~~~ypD~~~~~V~aiL~-~R----~D---~~-----~~~~k~ll~~~ 366 (399)
T 2fji_1 322 IDSILDIWQKYLEVYWDSRIDLLVGILK-CR----KD---VS-----SSERKKIVQQA 366 (399)
T ss_dssp GGGHHHHHHHHHTTCTTCCSHHHHHHHT-TC----TT---CC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHH-hc----cC---CC-----HHHHHHHHHHH
Confidence 47776655444 5799999999999995 22 11 12 24778888777
No 5
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=96.25 E-value=0.41 Score=51.86 Aligned_cols=106 Identities=14% Similarity=0.231 Sum_probs=75.7
Q ss_pred CCcchhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhhcc-------------CccccccCHHHHHHHHH
Q 003870 614 QNGNEYMNEVIIYLDTLMSTAQQILPLDALYKVGSGALEHISNSIVSAFL-------------SDSVKRFNANAVAIINH 680 (790)
Q Consensus 614 ~~ps~yi~dli~fL~~~f~s~~~~LP~~v~~~~~~~a~~his~~ll~~Ll-------------~~~vk~in~~al~n~~~ 680 (790)
.+++..|..|..||+..+..+-.+|-..+..++...-++++-+.+..+++ +..-+..++.-...+..
T Consensus 208 ~~~~~ai~PLm~yLd~~L~~l~~~L~~~~f~rvL~~lW~~~l~~l~~~i~lP~~~~~~~~~~~~~~~r~~~~~~~~~l~~ 287 (341)
T 3swh_A 208 QDADNVLQPIMDLLDSNLTLFAKICEKTVLKRVLKELWKLVMNTMERTIVLPPEFSKLKDHMVREEAKSLTPKQCAVVEL 287 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCSSSCC----------CTTHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhhhHhhhcccccCCCCHHHHHHHHH
Confidence 35688999999999999998888999999999999999999999998662 23356678888999999
Q ss_pred HHHHHHHhhhhhcccCCCcccCCcchHH--HhhhHHHHHHHHhhcCC
Q 003870 681 DLKKLEDFSDEKFHITGLSEINPEGSFR--RCLVEARQLINLLISSQ 725 (790)
Q Consensus 681 Dv~~lE~f~~~~~~~~g~~~~~~~~~L~--~~F~ELrQlidLl~s~~ 725 (790)
+++.|.+|--+. -.|+ ....|. ..+..|++.+.|...+.
T Consensus 288 ~L~~L~~fFhA~--G~GL----~~~~Leks~~~~~l~~~L~L~~~~T 328 (341)
T 3swh_A 288 ALDTIKQYFHAG--GVGL----KKTFLEKSPDLQSLRYALSLYTQAT 328 (341)
T ss_dssp HHHHHHHHHHGG--GTSC----CHHHHHTCHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhccC--CCCC----CHHHHccChhHHHHHHHHHHhcCCH
Confidence 999999998774 1233 122332 23677999998876654
No 6
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.19 Score=55.98 Aligned_cols=130 Identities=12% Similarity=0.170 Sum_probs=99.2
Q ss_pred cchhHHHHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHHHHHhhccCccccccCHHHHHHHHHHHHHHHHhhhhhcc
Q 003870 616 GNEYMNEVIIYLDTLMSTAQQ-ILPLDALYKVGSGALEHISNSIVSAFLSDSVKRFNANAVAIINHDLKKLEDFSDEKFH 694 (790)
Q Consensus 616 ps~yi~dli~fL~~~f~s~~~-~LP~~v~~~~~~~a~~his~~ll~~Ll~~~vk~in~~al~n~~~Dv~~lE~f~~~~~~ 694 (790)
|...+.+++.+|..++..+.. .+|+.+...++...|.+|+..+++-|+... +..+-.-=.++...|..||+|+.+.
T Consensus 200 ~~~~~~~Il~~L~~~~~~L~~~~V~~~l~~Q~fsQlf~~In~~lFN~LL~r~-~~cs~s~G~qIr~nls~Le~W~~~~-- 276 (419)
T 2f6h_X 200 EEYTMDDILTFFNSIYWCMKSFHIENEVFHAVVTTLLNYVDAICFNELIMKR-NFLSWKRGLQLNYNVTRLEEWCKTH-- 276 (419)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTCS-SCCCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred CccCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccC-cccchhhHHHHHhhHHHHHHHHHHc--
Confidence 345789999999988885533 799999999999999999999999555332 3455444478899999999999986
Q ss_pred cCCCcccCCcchHHHhhhHHHHHHHHhhcCCCccccchhhhcccCCCCChhhHHHHHhhhccC
Q 003870 695 ITGLSEINPEGSFRRCLVEARQLINLLISSQPENFMNPVIREKNYNALDYKKVASICEKFKDS 757 (790)
Q Consensus 695 ~~g~~~~~~~~~L~~~F~ELrQlidLl~s~~~~~y~~~~~R~~kY~rv~~~~~~~lLeK~~~~ 757 (790)
|+ +....+|..++|.++||....-.. -|-.....-.+.++|..+..||..|++.
T Consensus 277 --~l------~~a~~~L~~l~Qa~~lLq~~k~~~-~d~~~i~~~C~~Ln~~Ql~~il~~Y~~d 330 (419)
T 2f6h_X 277 --GL------TDGTECLQHLIQTAKLLQVRKYTI-EDIDILRGICYSLTPAQLQKLISQYQVA 330 (419)
T ss_dssp --TC------TTHHHHTHHHHHHHHHTTSCCSSH-HHHHHHHHHTTTSCHHHHHHHHHHCCCC
T ss_pred --CC------hhHHHHHHHHHHHHHHHhhCCCch-hhHHHHHHHhhcCCHHHHHHHHHhCCCc
Confidence 33 345678999999999998654321 2222222446889999999999999874
No 7
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.53 Score=51.52 Aligned_cols=133 Identities=13% Similarity=0.204 Sum_probs=100.3
Q ss_pred CCcchhHHHHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHHHHHhhccCccccccCHHHHHHHHHHHHHHHHhhhhh
Q 003870 614 QNGNEYMNEVIIYLDTLMSTAQQ-ILPLDALYKVGSGALEHISNSIVSAFLSDSVKRFNANAVAIINHDLKKLEDFSDEK 692 (790)
Q Consensus 614 ~~ps~yi~dli~fL~~~f~s~~~-~LP~~v~~~~~~~a~~his~~ll~~Ll~~~vk~in~~al~n~~~Dv~~lE~f~~~~ 692 (790)
..++..+.+++.+|..++..... .+|+.+...++...|.+|+..+++-|+.. .+..+-.-=.++...|..||+|+++
T Consensus 182 ~~~~~s~~~Il~~L~~~~~~L~~~~V~p~li~QlfsQLF~fIna~lFN~LLlR-r~~cs~s~G~qIr~NLs~LEeW~~~- 259 (386)
T 3mmi_A 182 NSGDEKFAKLFTFLNEFDAVLCKFQVVDSMHTKIFNDTLKYLNVMLFNDLITK-CPALNWKYGYEVDRNIERLVSWFEP- 259 (386)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCBCHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCCccCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHcc-CcccCcchHHHHHhhHHHHHHHHHh-
Confidence 35677899999999998886544 79999999999999999999999966633 3445666667889999999999987
Q ss_pred cccCCCcccCCcchHHHhhhHHHHHHHHhhcCCCccccchhhhcccCCCCChhhHHHHHhhhccCCC
Q 003870 693 FHITGLSEINPEGSFRRCLVEARQLINLLISSQPENFMNPVIREKNYNALDYKKVASICEKFKDSPD 759 (790)
Q Consensus 693 ~~~~g~~~~~~~~~L~~~F~ELrQlidLl~s~~~~~y~~~~~R~~kY~rv~~~~~~~lLeK~~~~~~ 759 (790)
|.+ . ....|..++|.+.||....- +.-|...-..-.+.++|.....||..|++...
T Consensus 260 ----~l~----~--a~~~L~~L~QA~~LLQ~~K~-t~~Di~~i~~~C~~Lsp~QL~kIL~~Y~p~~~ 315 (386)
T 3mmi_A 260 ----RIE----D--VRPNLIQIIQAVKILQLKIS-NLNEFKLLFDFWYALNPAQIQAILLKYKPANK 315 (386)
T ss_dssp ----TSS----C--CGGGGHHHHHHHHHHHCCCC-CHHHHHHHHTTCCSSCHHHHHHHHHTBCCC--
T ss_pred ----ccH----H--HHHHHHHHHHHHHHHccCCC-CHHHHHHHHHhcccCCHHHHHHHHHhCcCCCC
Confidence 332 1 12579999999999987632 22222222234778999999999999987643
No 8
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=91.86 E-value=2.6 Score=39.66 Aligned_cols=108 Identities=6% Similarity=0.068 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhhhhccccccCCCCCcchhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHH
Q 003870 576 LKTSRDAAYITLLNLVNTKLDEFMALTENINWTTEDTSQNGNEYMNEVIIYLDTLMSTAQQILPLDALYKVGSGALEHIS 655 (790)
Q Consensus 576 f~~~r~~Ae~~I~~lv~~KIdeflel~~~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~~~~LP~~v~~~~~~~a~~his 655 (790)
|.+-++.-++++.+.|..-+.--+. +|.... ..||.|+..++.-+.++-..+.-.||++-...++...+.-.-
T Consensus 17 y~eH~~eI~~KLv~Im~~r~~~~l~-----~Wd~k~--pvpS~~m~tl~Ke~~kLH~~Ls~~LP~~~v~~Im~~Vf~~fk 89 (141)
T 3n1e_A 17 YHDHIAEISAKLVAIMDSLFDKLLS-----KYEVKA--PVPSPCFRNICKQMTKMHEAIFDLLPEEQTQMLFLRINASYK 89 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-----TCCCCS--SSSCHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HhccCC--CCCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 6666666677777777776654432 897643 379999999999999999988889999999999999998888
Q ss_pred HHHHhhccCccccccCHHHHHH--HHHHHHHHHHhhhhh
Q 003870 656 NSIVSAFLSDSVKRFNANAVAI--INHDLKKLEDFSDEK 692 (790)
Q Consensus 656 ~~ll~~Ll~~~vk~in~~al~n--~~~Dv~~lE~f~~~~ 692 (790)
+.+-+.+. ...--|.+|-.. +-.||.|..+-....
T Consensus 90 ~~l~~~~~--~~~i~~~~G~q~g~v~~Dv~ff~~~L~~L 126 (141)
T 3n1e_A 90 LHLKKQLS--HLNVINDGGPQNGLVTADVAFYTGNLQAL 126 (141)
T ss_dssp HHHHHHHH--HTTCCSSSSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHH--HcCCCCCCcccchHHHHHHHHHHHHhccc
Confidence 88887774 333356666665 789999988887765
No 9
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=54.17 E-value=2.9e+02 Score=31.45 Aligned_cols=250 Identities=9% Similarity=0.082 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------cccHHHhhHHHHHHhhcC-----CCCchHHHHHHHhhchhHH
Q 003870 124 KKNVTGAIKMGKICVQVLDLCVKCNNHITDG-------QFYPALKTIDLIEKNYLQ-----IIPVKALKMVIEKTIPVIK 191 (790)
Q Consensus 124 ~~nI~eai~~L~~cl~VLel~~k~~e~i~ek-------kyy~ALktLd~Le~~~L~-----~v~~~~f~~~i~~sIP~lr 191 (790)
++||+.++.++...++-.+..++.+.-|++| .|-.||+-|++.-. |++ ......|.. +...+-.+-
T Consensus 2 ~~NId~~l~~i~~v~~~~~~~~~~e~iI~~Gp~~~~l~~Yl~al~rl~~al~-~~~~~n~~s~e~~~f~g-~l~~~~~L~ 79 (564)
T 2b1e_A 2 HMNIESTLNSVASVKDLANEASKYEIILQKGINQVGLKQYTQVVHKLDDMLE-DIQSGQANREENSEFHG-ILTHLEQLI 79 (564)
T ss_dssp ------CCGGGCCHHHHHHHHHHHHHHHHTCHHHHCHHHHHHHHHHHHHHHH-HHHC----CCCSHHHHH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHH-HHHhcCCCchhhhhhHH-HHHHHHHHH
Confidence 5799999999999999999999999998887 58888877776433 222 233445666 444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhccCCCCCcccccccCCcCcccccccCc
Q 003870 192 THIEKKVTSQFNEWLVHVRSSAKDIGQTAIGRAASARQRDEEMLDRQRKAEEQNLSGFGDFSFTLEVEDIDEDSVLKFDL 271 (790)
Q Consensus 192 ~~Ik~~~~~~l~~WL~~IR~~s~~IG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~e~~~~~iDf 271 (790)
+.-+.....+|...|.. |..+--... +... .+ ... ..++. .=++
T Consensus 80 ~~g~~~L~~~F~~lL~~----s~p~~p~~~------------i~k~--------------~p----~p~-l~~~~-l~~L 123 (564)
T 2b1e_A 80 KRSEAQLRVYFISILNS----IKPFDPQIN------------ITKK--------------MP----FPY-YEDQQ-LGAL 123 (564)
T ss_dssp HHHHHHHHHHHHHHHTT----SCCCCHHHH------------HHHT--------------CC----CCC-CCHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHh----CCCCCHHHh------------hccC--------------CC----CCC-CCHHH-HHHH
Confidence 44444444455554432 111111110 0000 00 000 01111 1368
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHhHhhhhcccc---CCC-----c--cch---HHHHHHHHHHHhhHHhhhHHHHhh
Q 003870 272 TPLYRAYHIHTCLGIPSQFREYYYRNRLLQLTSDLQ---ISS-----V--QPF---VESYQTFLAQIAGYFIVEDRVLRT 338 (790)
Q Consensus 272 ~Ply~cihI~~~Lg~~e~F~~yY~~~Rr~Q~~l~l~---~~~-----~--~~~---~~~l~~yl~~I~GFFvvE~~vl~t 338 (790)
.++.+|+ ...|-..++.+-|.+.|......-|. +.. . .+. .+.+..|...+.|+|..|..+...
T Consensus 124 ~~Ia~~m---~~~g~~~~~~~iY~~~R~~~l~~sL~~L~~~~k~~~~~~~~~~e~~~~~i~~~~~a~~~l~~~E~~L~~~ 200 (564)
T 2b1e_A 124 SWILDYF---HGNSEGSIIQDILVGERSKLILKCMAFLEPFAKEISTAKNAPYEKGSSGMNSYTEALLGFIANEKSLVDD 200 (564)
T ss_dssp HHHHHHH---HHTTCHHHHHHHHHHHHHHHHHHHHTTTSTTCC------------CCSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HhcCCchHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCchhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888884 44488899999999999886533222 100 0 011 145899999999999999999755
Q ss_pred hCCCCChhhHHHHHHHHHHHHH----HHHHHH---hccCC--ChHHHHHHHHHHHHHHHHhhhcCCCc-hhHHHHHHHHH
Q 003870 339 AGGLLLPDQLETMWETAVAKIT----SVLEEQ---FSHMD--SATHLLLVKDYVTLLGATLRQYGYEV-GPVLEVLDKSQ 408 (790)
Q Consensus 339 t~~l~s~~~vdelW~~~~~kl~----~~l~~~---~~~~~--~~~~ll~iK~~i~lf~~tl~~ygy~v-~~L~~~L~~l~ 408 (790)
..+-. ...-+.....++.... ..++.. .+.+. +.=.++.+=+.+.-+...+++..... ..+.+++..+.
T Consensus 201 vf~~~-~~~~~~~f~~i~~~~l~~~~~~l~~~~~~~k~~~~~~~f~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~ 279 (564)
T 2b1e_A 201 LYSQY-TESKPHVLSQILSPLISAYAKLFGANLKIVRSNLENFGFFSFELVESINDVKKSLRGKELQNYNLLQDCTQEVR 279 (564)
T ss_dssp HSCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCTHHHHHHHHHHHHHHHTTTCCCTTHHHHHHHHHHHH
T ss_pred HcCCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcchhHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHH
Confidence 44321 1222333333333222 122211 11111 11123444444554455666544433 46666666666
Q ss_pred HHHHHHH
Q 003870 409 DKYHELL 415 (790)
Q Consensus 409 d~Y~elL 415 (790)
+.=..++
T Consensus 280 ~~~~~~~ 286 (564)
T 2b1e_A 280 QVTQSLF 286 (564)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544433
No 10
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=40.78 E-value=3.1e+02 Score=30.95 Aligned_cols=32 Identities=6% Similarity=0.108 Sum_probs=18.8
Q ss_pred HHHHHHHHhhHHHHHHHhhhchhHHHHHHHHHH
Q 003870 51 HQLKSVVRKKEAEIEELCKTHYEEFILAVDELR 83 (790)
Q Consensus 51 ~~L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~ 83 (790)
+.|..+|++-..++|++ ..++.+.-.-+.++.
T Consensus 60 rDltkrINELKnqLEdl-sKnsKdseqy~k~~~ 91 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEY-QKNNKDSHSLTTNIM 91 (562)
T ss_dssp HHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH-HhhchhHHHHHHHHH
Confidence 34777777777777777 445444444444433
No 11
>1zva_A E2 glycoprotein; membrane fusion, virus entry, coiled C conformational change, viral protein; 1.50A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_B
Probab=37.08 E-value=79 Score=26.19 Aligned_cols=70 Identities=16% Similarity=0.242 Sum_probs=47.0
Q ss_pred HHHHHHHHhhHHHHHHHh---hhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003870 51 HQLKSVVRKKEAEIEELC---KTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVGSALLIKLEELLESYAIKKNV 127 (790)
Q Consensus 51 ~~L~~~i~~kd~eIE~iC---~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~~kk~~L~~~r~v~~nI 127 (790)
.+.+..++.+-..+..+- +.|++.+-+|+.++..-.. +++..+|..+-. +-.+.-..|.+.+.|
T Consensus 3 ~kiQdVVN~q~~aL~~L~~qL~~NFgAISSsi~dIy~rLd------GRlaaLnafv~~-------~~~ev~~~r~lA~~i 69 (77)
T 1zva_A 3 GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDISGGRG------GDISGINASVVN-------IQKEIDRLNEVAKNL 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC------CCCTTHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc------chHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 455666666666665553 5688888888888887665 667776666544 555666777777777
Q ss_pred HHHHHH
Q 003870 128 TGAIKM 133 (790)
Q Consensus 128 ~eai~~ 133 (790)
+|...-
T Consensus 70 NEcV~~ 75 (77)
T 1zva_A 70 NESLID 75 (77)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 776543
No 12
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=28.04 E-value=3.1e+02 Score=24.07 Aligned_cols=78 Identities=15% Similarity=0.260 Sum_probs=41.8
Q ss_pred HHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHH---HHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003870 55 SVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEEL---KSD-LSSDNYRLQEVGSALLIKLEELLESYAIKKNVTGA 130 (790)
Q Consensus 55 ~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L---~~~-l~~~n~~Lq~s~~~L~~kk~~L~~~r~v~~nI~ea 130 (790)
..+++++.||.++-. ++.+|-.+=.+...| +++ +..++..+..+...+-.-.++|.++.+-+++-..-
T Consensus 14 ~~i~eR~~eI~~Ie~--------~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk 85 (109)
T 3hd7_B 14 SEIETRHSEIIKLEN--------SIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRK 85 (109)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 345667777776643 333333333333222 222 66667777777777777777776666655554443
Q ss_pred HHHHHHHHHH
Q 003870 131 IKMGKICVQV 140 (790)
Q Consensus 131 i~~L~~cl~V 140 (790)
.--+-.|+-+
T Consensus 86 ~~i~l~~~~i 95 (109)
T 3hd7_B 86 KIMIIICCVI 95 (109)
T ss_dssp HHHHHHHHHH
T ss_pred ceehHHHHHH
Confidence 3333344333
No 13
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=27.23 E-value=4.3e+02 Score=25.48 Aligned_cols=74 Identities=8% Similarity=-0.003 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHhhHHHHHHhhcCCC-CchHHHHHHHhhchhHHHHHH
Q 003870 121 YAIKKNVTGAIKMGKICVQVLDLCVKCNNHITDGQFYPALKTIDLIEKNYLQII-PVKALKMVIEKTIPVIKTHIE 195 (790)
Q Consensus 121 r~v~~nI~eai~~L~~cl~VLel~~k~~e~i~ekkyy~ALktLd~Le~~~L~~v-~~~~f~~~i~~sIP~lr~~Ik 195 (790)
..|+....+|+..+-.|..+=.++..+...++.++..--..++.-|.... ... +...+...+..-+|.+...+.
T Consensus 112 ~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l-~~~~~~~~~~~~l~~l~p~l~~~l~ 186 (242)
T 2qk2_A 112 PNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARAL-TRTQPTALNKKLLKLLTTSLVKTLN 186 (242)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH-TTCCGGGCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH-HHcCCCCccHHHHHHHHHHHHHHhc
Confidence 46777888888877777777777888888888877654455555554422 222 122244455666666665553
No 14
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=26.26 E-value=2.9e+02 Score=23.25 Aligned_cols=52 Identities=15% Similarity=0.313 Sum_probs=37.8
Q ss_pred hHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHH
Q 003870 60 KEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVGSALL 111 (790)
Q Consensus 60 kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~ 111 (790)
+-..+|++-..+-+.-++-..+|..++.+...|++++-..+-.|+.....-.
T Consensus 7 rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 7 RVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3345566666667777888888888888888888888888777777655433
No 15
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=23.56 E-value=3e+02 Score=22.33 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=31.0
Q ss_pred HHHHHHhhHHHHHHHhhhchhHHHHHHH----HHHhhhhhHHHHHHHHHHhhHHHHH
Q 003870 53 LKSVVRKKEAEIEELCKTHYEEFILAVD----ELRGVLVDAEELKSDLSSDNYRLQE 105 (790)
Q Consensus 53 L~~~i~~kd~eIE~iC~~~yq~Fi~sv~----~L~~Vr~~~~~L~~~l~~~n~~Lq~ 105 (790)
-+..+...-.|.|......+++....+. ++...+....+|+..|..+..+|+.
T Consensus 18 YE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 18 YESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666667777777776666654443 3455555555555555555555543
No 16
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=22.39 E-value=4.5e+02 Score=24.77 Aligned_cols=58 Identities=12% Similarity=0.210 Sum_probs=28.6
Q ss_pred HHHHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003870 53 LKSVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVGSALLIKLEELL 118 (790)
Q Consensus 53 L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~~kk~~L~ 118 (790)
++.-+..-...|++|-.. |+.++.+.+.-- .++.+|..+...+...++.+..+.+.|-
T Consensus 48 I~~~i~~i~~~v~~l~~~-~~~~L~~~~~~~-------~~k~~le~l~~~i~~~a~~ik~~Lk~l~ 105 (180)
T 1s94_A 48 IRAMIDKISDNVDAVKKK-HSDILSAPQTDD-------QMKEELEELMTDIKRTANKVRGKLKTIE 105 (180)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHCC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhcCCchH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666555 344555444333 4555555555555555555555555544
No 17
>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B
Probab=20.32 E-value=1.4e+02 Score=26.64 Aligned_cols=41 Identities=24% Similarity=0.402 Sum_probs=28.0
Q ss_pred cccHHHhhHHHHHHhhcCC-CCchHHHHHHHhhchhHHHHHH
Q 003870 155 QFYPALKTIDLIEKNYLQI-IPVKALKMVIEKTIPVIKTHIE 195 (790)
Q Consensus 155 kyy~ALktLd~Le~~~L~~-v~~~~f~~~i~~sIP~lr~~Ik 195 (790)
..|+-+++||.||+-|+.. |+.-.....-.+-|-..|...+
T Consensus 33 elYSII~tle~LEkAyikD~It~~eYt~~c~rLL~QyKt~~~ 74 (109)
T 2f6m_B 33 EIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYLN 74 (109)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999977 6655555544444444444333
Done!