Query 003870
Match_columns 790
No_of_seqs 134 out of 219
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 06:44:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003870.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003870hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fx0a1 a.69.1.1 (A:373-501) F 16.5 93 0.0068 26.2 5.6 54 419-490 41-94 (129)
2 d2efla1 a.238.1.4 (A:1-288) Fo 15.8 3.6E+02 0.026 24.0 18.0 11 209-219 238-248 (288)
3 d1ez3a_ a.47.2.1 (A:) Syntaxin 13.4 3.1E+02 0.022 22.0 10.8 59 53-119 15-73 (124)
4 d2f6mb1 a.2.17.2 (B:15-118) Va 12.1 2E+02 0.014 23.4 6.1 40 155-194 28-68 (104)
5 d1u5la_ d.6.1.1 (A:) Prion pro 10.4 78 0.0057 25.9 2.9 19 60-78 88-106 (107)
6 d1dkza1 a.8.4.1 (A:507-603) Dn 9.6 3.3E+02 0.024 21.0 6.8 38 183-220 59-96 (97)
7 d2qklb1 a.242.1.1 (B:2-91) mRN 8.8 2.2E+02 0.016 22.4 5.1 36 170-206 54-89 (90)
8 d1g4yb_ f.15.1.1 (B:) Small-co 8.1 1.9E+02 0.014 22.3 4.1 31 69-99 38-68 (82)
9 d1i17a_ d.6.1.1 (A:) Prion-lik 7.9 41 0.003 27.6 0.2 17 60-76 85-101 (107)
10 d2p61a1 a.24.29.1 (A:34-152) H 7.6 4E+02 0.029 21.7 6.6 42 90-139 12-53 (119)
No 1
>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=16.45 E-value=93 Score=26.17 Aligned_cols=54 Identities=9% Similarity=0.229 Sum_probs=36.5
Q ss_pred HHHHHHhhhhcCCCcccccCChHHHHhhhhhccCCCCCCCCCCCccccCCCchHHHHHHHHHHHHHHHHHhc
Q 003870 419 CQQQITTVLTNDTYEQMLMKKDTDYENNVLLFHLQSSDIMPAFPYIAPFSSMVPDACRIVRSFIKGSVDYLS 490 (790)
Q Consensus 419 ~~~~f~~il~~D~y~Pm~V~~~eey~~~v~~~~~~~~~~~~~fP~~lPFS~~vP~~c~~ir~fi~~~~~f~~ 490 (790)
-.+..++++..+.|.||.|.. .++..|-.. .+.....|+ ..|+.|-..++.|+.
T Consensus 41 rG~rl~ElLKQ~q~~Pl~v~e-----Qv~iLyA~~-~G~LD~ipv------------~~I~~fe~~ll~~l~ 94 (129)
T d1fx0a1 41 RGQRLRELLKQPQSAPLTVEE-----QVMTIYTGT-NGYLDSLEL------------DQVRKYLVELRTYVK 94 (129)
T ss_dssp HHHHHHHHHCCCTTCCCCHHH-----HHHHHHHHH-TTSSSSSCH------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccccCCCHHH-----HHHHHHHHH-cCccccCCH------------HHHHHHHHHHHHHHH
Confidence 366788999999999999943 333333332 223334555 468889888888885
No 2
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.82 E-value=3.6e+02 Score=24.04 Aligned_cols=11 Identities=27% Similarity=0.226 Sum_probs=4.8
Q ss_pred HHHHhHHHHHH
Q 003870 209 VRSSAKDIGQT 219 (790)
Q Consensus 209 IR~~s~~IG~~ 219 (790)
.......++..
T Consensus 238 ~~~~~~~~~~~ 248 (288)
T d2efla1 238 DRQVIPIIGKC 248 (288)
T ss_dssp HTTHHHHHHHH
T ss_pred HHHHhhhHHHH
Confidence 33344444443
No 3
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=13.43 E-value=3.1e+02 Score=22.00 Aligned_cols=59 Identities=15% Similarity=0.278 Sum_probs=36.1
Q ss_pred HHHHHHhhHHHHHHHhhhchhHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003870 53 LKSVVRKKEAEIEELCKTHYEEFILAVDELRGVLVDAEELKSDLSSDNYRLQEVGSALLIKLEELLE 119 (790)
Q Consensus 53 L~~~i~~kd~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~Lq~s~~~L~~kk~~L~~ 119 (790)
+..-+..-+..|++|..-| ..++.++... .+++.++.++..+++..++.+..+.+.|-+
T Consensus 15 Ir~~I~~i~~~v~~i~~~~-~~~l~~~~~~-------~~~~~~l~~~~~~i~~~a~~ik~~Lk~l~~ 73 (124)
T d1ez3a_ 15 IRGFIDKIAENVEEVKRKH-SAILASPNPD-------EKTKEELEELMSDIKKTANKVRSKLKSIEQ 73 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHCSSCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHcCCCcc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677777777666 3444433222 345666666667777777777766666643
No 4
>d2f6mb1 a.2.17.2 (B:15-118) Vacuolar protein sorting-associated protein 28, VPS28 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.10 E-value=2e+02 Score=23.36 Aligned_cols=40 Identities=25% Similarity=0.404 Sum_probs=27.6
Q ss_pred cccHHHhhHHHHHHhhcCC-CCchHHHHHHHhhchhHHHHH
Q 003870 155 QFYPALKTIDLIEKNYLQI-IPVKALKMVIEKTIPVIKTHI 194 (790)
Q Consensus 155 kyy~ALktLd~Le~~~L~~-v~~~~f~~~i~~sIP~lr~~I 194 (790)
..|+-+.+||.||+-|+.. |+.-.....-.+-|-.-|..+
T Consensus 28 elysII~tLe~LEkAyikD~It~~eYt~~c~rLl~QyK~~~ 68 (104)
T d2f6mb1 28 EIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYL 68 (104)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH
Confidence 3688899999999999877 665555555555555444444
No 5
>d1u5la_ d.6.1.1 (A:) Prion protein domain {Red-eared slider turtle (Trachemys scripta) [TaxId: 34903]}
Probab=10.40 E-value=78 Score=25.88 Aligned_cols=19 Identities=32% Similarity=0.735 Sum_probs=15.9
Q ss_pred hHHHHHHHhhhchhHHHHH
Q 003870 60 KEAEIEELCKTHYEEFILA 78 (790)
Q Consensus 60 kd~eIE~iC~~~yq~Fi~s 78 (790)
.++=||+||...|++|-.+
T Consensus 88 m~rvI~EMC~tqY~~~~la 106 (107)
T d1u5la_ 88 MKQVIQEMCMQQYQQYQLA 106 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4567999999999999754
No 6
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Probab=9.57 E-value=3.3e+02 Score=21.03 Aligned_cols=38 Identities=11% Similarity=0.226 Sum_probs=23.6
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003870 183 IEKTIPVIKTHIEKKVTSQFNEWLVHVRSSAKDIGQTA 220 (790)
Q Consensus 183 i~~sIP~lr~~Ik~~~~~~l~~WL~~IR~~s~~IG~~a 220 (790)
|...|-.++..+...-...++..+..+...+..+|+.|
T Consensus 59 i~~~i~~l~~~l~~~d~~~i~~~~~~L~~~~~~l~e~a 96 (97)
T d1dkza1 59 IESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIA 96 (97)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555555555555555566666666777777777654
No 7
>d2qklb1 a.242.1.1 (B:2-91) mRNA decapping enzyme Dcp2p, N-terminal domain {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=8.77 E-value=2.2e+02 Score=22.42 Aligned_cols=36 Identities=11% Similarity=0.243 Sum_probs=27.1
Q ss_pred hcCCCCchHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q 003870 170 YLQIIPVKALKMVIEKTIPVIKTHIEKKVTSQFNEWL 206 (790)
Q Consensus 170 ~L~~v~~~~f~~~i~~sIP~lr~~Ik~~~~~~l~~WL 206 (790)
.||.++...|++.|-+.+|.|+..+.. +.+-+.+||
T Consensus 54 ~Lp~~~~~~Fa~~if~~cp~L~~~~~~-~~~~~~~F~ 89 (90)
T d2qklb1 54 QLPSLGLRVFSAKLFAHCPLLWKWSKV-HEEAFDDFL 89 (90)
T ss_dssp TSCCCCHHHHHHHHHHHCTHHHHHHTC-CHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHCHHHHhhhhh-HHHHHHHHh
Confidence 478888889999999999999998764 223344443
No 8
>d1g4yb_ f.15.1.1 (B:) Small-conductance potassium channel {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.12 E-value=1.9e+02 Score=22.32 Aligned_cols=31 Identities=23% Similarity=0.474 Sum_probs=25.6
Q ss_pred hhchhHHHHHHHHHHhhhhhHHHHHHHHHHh
Q 003870 69 KTHYEEFILAVDELRGVLVDAEELKSDLSSD 99 (790)
Q Consensus 69 ~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~ 99 (790)
..|--.|..||.+|.+||-+-.+|+++..++
T Consensus 38 R~HQRkfL~AIh~~R~vk~~qRkl~d~~nsl 68 (82)
T d1g4yb_ 38 RKHQRKFLQAIHQLRSVKMEQRKLNDQANTL 68 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999998888776543
No 9
>d1i17a_ d.6.1.1 (A:) Prion-like protein Doppel {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.88 E-value=41 Score=27.55 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=14.2
Q ss_pred hHHHHHHHhhhchhHHH
Q 003870 60 KEAEIEELCKTHYEEFI 76 (790)
Q Consensus 60 kd~eIE~iC~~~yq~Fi 76 (790)
.++=|++||...|++|.
T Consensus 85 l~rvIrEmC~~qy~ef~ 101 (107)
T d1i17a_ 85 LWRLIKEICSAKHCDFW 101 (107)
T ss_dssp HHHHHHHHHHHCCCTTC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45668999999999984
No 10
>d2p61a1 a.24.29.1 (A:34-152) Hypothetical protein TM1646 {Thermotoga maritima [TaxId: 2336]}
Probab=7.58 E-value=4e+02 Score=21.73 Aligned_cols=42 Identities=12% Similarity=0.104 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003870 90 EELKSDLSSDNYRLQEVGSALLIKLEELLESYAIKKNVTGAIKMGKICVQ 139 (790)
Q Consensus 90 ~~L~~~l~~~n~~Lq~s~~~L~~kk~~L~~~r~v~~nI~eai~~L~~cl~ 139 (790)
.....++.++-.++-+.|..|... .+..|+..--+++..++.
T Consensus 12 ~~~~e~L~~l~~~I~~~G~~L~~~--------~t~~~l~~YK~lIk~fl~ 53 (119)
T d2p61a1 12 DHFEKLLEEAVEEVIDSGNELVRS--------PTPSNLKRYKNAIKEFLK 53 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC--------CCHHHHHHHHHHHHHHHH
Confidence 455566777777777777776654 344566666666666666
Done!