BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003871
(790 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 14/146 (9%)
Query: 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 641
L+GHQ + + S +L + SS DA + +WD K+ + S G V T+
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ-----IKSIDAGPVDAWTLA- 129
Query: 642 HIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 700
F PD +L + H G+++++ + L D I YS DGK +
Sbjct: 130 ---FSPDSQYLATGTHVGKVNIFGVESGKKEYSL--DTRGKFILSIAYSPDGKYLASGAI 184
Query: 701 SGHVKVFDTSTLELRCQINLTAYAQP 726
G + +FD +T +L L +A P
Sbjct: 185 DGIINIFDIATGKLLH--TLEGHAMP 208
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 23/180 (12%)
Query: 445 VRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA 503
+R I H + ++++ + T KLW W++N +LE Q ++ VM +A
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENN-WALE--------QTFEGHEHFVMC--VAF 148
Query: 504 DPKDSISCFAL----RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLF 559
+PKD S FA R ++S G F+L T Q Y+ L +
Sbjct: 149 NPKDP-STFASGCLDRTVKVWSL-GQSTPNFTLTTGQERGV-----NYVDYYPLPDKPYM 201
Query: 560 AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 619
DD +I + TK A L+GH + ++ + +L +++S D L +W++ +K
Sbjct: 202 ITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 23/180 (12%)
Query: 445 VRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA 503
+R I H + ++++ + T KLW W++N +LE Q ++ VM +A
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENN-WALE--------QTFEGHEHFVMC--VAF 148
Query: 504 DPKDSISCFAL----RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLF 559
+PKD S FA R ++S G F+L T Q Y+ L +
Sbjct: 149 NPKDP-STFASGCLDRTVKVWSL-GQSTPNFTLTTGQERGV-----NYVDYYPLPDKPYM 201
Query: 560 AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 619
DD +I + TK A L+GH + ++ + +L +++S D L +W++ +K
Sbjct: 202 ITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 556 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQL 674
K L + HS V+ + F+ D + + S ++G +++ + L
Sbjct: 159 KTGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Query: 675 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710
+ D + P+++ +S +GK I + +K++D S
Sbjct: 210 IDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 244
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 638
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 83 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 142
Query: 639 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 698
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 143 LIVSGSFD-ESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 189
Query: 699 CKSGHVKVFDTST 711
G +++DT++
Sbjct: 190 SYDGLCRIWDTAS 202
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 71/156 (45%), Gaps = 11/156 (7%)
Query: 556 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQL 674
+C K L + + V+ + F+ D + + S ++G +++ + L
Sbjct: 140 K--TGMCLKTLPA-------HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 675 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710
+ D + P+++ +S +GK I + +K++D S
Sbjct: 191 IDDD-NPPVSFVKFSPNGKYILAATLDNDLKLWDYS 225
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 16/133 (12%)
Query: 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 638
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 639 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 698
++ F + + + + G + +P D P++ ++ DG I S
Sbjct: 124 LIVSGSFD-ESVRIWDVKTGMC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 170
Query: 699 CKSGHVKVFDTST 711
G +++DT++
Sbjct: 171 SYDGLCRIWDTAS 183
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 22/169 (13%)
Query: 455 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 514
++++ + T KLW W++N +LE Q ++ VM +A +PKD S FA
Sbjct: 111 YVLSGSDDLTVKLWNWENN-WALE--------QTFEGHEHFVMC--VAFNPKDP-STFAS 158
Query: 515 ----RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILV 570
R ++S G F+L T Q Y+ L + DD +I +
Sbjct: 159 GCLDRTVKVWSL-GQSTPNFTLTTGQERGV-----NYVDYYPLPDKPYMITASDDLTIKI 212
Query: 571 HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 619
TK A L+GH + ++ + +L +++S D L +W++ +K
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 22/169 (13%)
Query: 455 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 514
++++ + T KLW W++N +LE Q ++ VM +A +PKD S FA
Sbjct: 111 YVLSGSDDLTVKLWNWENN-WALE--------QTFEGHEHFVMC--VAFNPKDP-STFAS 158
Query: 515 ----RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILV 570
R ++S G F+L T Q Y+ L + DD +I +
Sbjct: 159 GCLDRTVKVWSL-GQSTPNFTLTTGQERGV-----NYVDYYPLPDKPYMITASDDLTIKI 212
Query: 571 HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 619
TK A L+GH + ++ + +L +++S D L +W++ +K
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 556 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 160
Query: 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQL 674
K L + HS V+ + F+ D + + S ++G +++ + L
Sbjct: 161 KTGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 211
Query: 675 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710
+ D + P+++ +S +GK I + +K++D S
Sbjct: 212 IDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 246
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 638
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 85 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 144
Query: 639 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 698
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 145 LIVSGSFD-ESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 191
Query: 699 CKSGHVKVFDTST 711
G +++DT++
Sbjct: 192 SYDGLCRIWDTAS 204
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 71/156 (45%), Gaps = 11/156 (7%)
Query: 556 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQL 674
+C K L + + V+ + F+ D + + S ++G +++ + L
Sbjct: 140 K--TGMCLKTLPA-------HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 675 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710
+ D + P+++ +S +GK I + +K++D S
Sbjct: 191 IDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 16/133 (12%)
Query: 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 638
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 639 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 698
++ F + + + + G + +P D P++ ++ DG I S
Sbjct: 124 LIVSGSFD-ESVRIWDVKTGMC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 170
Query: 699 CKSGHVKVFDTST 711
G +++DT++
Sbjct: 171 SYDGLCRIWDTAS 183
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 556 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQL 674
K L + HS V+ + F+ D + + S ++G +++ + L
Sbjct: 143 KTGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Query: 675 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710
+ D + P+++ +S +GK I + +K++D S
Sbjct: 194 IDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 638
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 639 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 698
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 127 LIVSGSFD-ESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 173
Query: 699 CKSGHVKVFDTST 711
G +++DT++
Sbjct: 174 SYDGLCRIWDTAS 186
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 556 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 94 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 153
Query: 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQL 674
K L + HS V+ + F+ D + + S ++G +++ + L
Sbjct: 154 KTGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 204
Query: 675 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710
+ D + P+++ +S +GK I + +K++D S
Sbjct: 205 IDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 239
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 638
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 78 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 137
Query: 639 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 698
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 138 LIVSGSFD-ESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 184
Query: 699 CKSGHVKVFDTST 711
G +++DT++
Sbjct: 185 SYDGLCRIWDTAS 197
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 25/150 (16%)
Query: 449 YSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS 508
+ HSG L + + T KLW +Q E M + SS +M N
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGF-----ECIRTMHGHDHNVSSVSIMPN--------- 203
Query: 509 ISCFALRGSHLFSASGGK-ISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDD 565
G H+ SAS K I ++ ++T + TF + QD L A +D
Sbjct: 204 -------GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR-MVRPNQDGTLIASCSND 255
Query: 566 SSILVHCPCTKKTKAKLKGHQNRITCLAYS 595
++ V TK+ KA+L+ H++ + C++++
Sbjct: 256 QTVRVWVVATKECKAELREHRHVVECISWA 285
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 564 DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 623
+D++I V T + LKGH + + +++ S +L S AD + +WD G++ C
Sbjct: 128 EDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE--CI 185
Query: 624 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 667
+ +H V+ + P+ H++S + I ++E T
Sbjct: 186 RTMHGHDHN-------VSSVSIMPNGDHIVSASRDKTIKMWEVQT 223
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 579 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 614
K L GH++ +T + + +V+VS+ DA + VWD
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWD 136
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 556 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL-SIHEGQIDVYEAPTLNHTSQL 674
K L + HS V+ + F+ D ++ S ++G +++ + L
Sbjct: 140 KTGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 675 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710
+ D + P+++ +S +GK I + +K++D S
Sbjct: 191 IDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 638
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 639 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 698
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 124 LIVSGSFD-ESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 170
Query: 699 CKSGHVKVFDTST 711
G +++DT++
Sbjct: 171 SYDGLCRIWDTAS 183
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 556 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQL 674
K L + HS V+ + F+ D + + S ++G +++ + L
Sbjct: 143 KTGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Query: 675 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710
+ D + P+++ +S +GK I + +K++D S
Sbjct: 194 IDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 638
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 639 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 698
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 127 LIVSGSFD-ESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 173
Query: 699 CKSGHVKVFDTST 711
G +++DT++
Sbjct: 174 SYDGLCRIWDTAS 186
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 556 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 73 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 132
Query: 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQL 674
K L + HS V+ + F+ D + + S ++G +++ + L
Sbjct: 133 KTGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 183
Query: 675 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710
+ D + P+++ +S +GK I + +K++D S
Sbjct: 184 IDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 218
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 638
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 57 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 116
Query: 639 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 698
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 117 LIVSGSFD-ESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 163
Query: 699 CKSGHVKVFDTST 711
G +++DT++
Sbjct: 164 SYDGLCRIWDTAS 176
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 556 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQL 674
K L + HS V+ + F+ D + + S ++G +++ + L
Sbjct: 137 KTGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Query: 675 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710
+ D + P+++ +S +GK I + +K++D S
Sbjct: 188 IDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 638
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 639 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 698
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 121 LIVSGSFD-ESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 167
Query: 699 CKSGHVKVFDTST 711
G +++DT++
Sbjct: 168 SYDGLCRIWDTAS 180
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 556 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 76 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 135
Query: 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL-SIHEGQIDVYEAPTLNHTSQL 674
K L + HS V+ + F+ D ++ S ++G +++ + L
Sbjct: 136 KTGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 186
Query: 675 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710
+ D + P+++ +S +GK I + +K++D S
Sbjct: 187 IDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 221
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 638
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 60 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 119
Query: 639 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 698
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 120 LIVSGSFD-ESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 166
Query: 699 CKSGHVKVFDTST 711
G +++DT++
Sbjct: 167 SYDGLCRIWDTAS 179
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 556 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 78 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 137
Query: 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQL 674
K L + HS V+ + F+ D + + S ++G +++ + L
Sbjct: 138 KTGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 188
Query: 675 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710
+ D + P+++ +S +GK I + +K++D S
Sbjct: 189 IDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 223
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 638
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 62 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 121
Query: 639 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 698
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 122 LIVSGSFD-ESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 168
Query: 699 CKSGHVKVFDTST 711
G +++DT++
Sbjct: 169 SYDGLCRIWDTAS 181
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 556 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 82 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 141
Query: 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQL 674
K L + HS V+ + F+ D + + S ++G +++ + L
Sbjct: 142 KTGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 192
Query: 675 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710
+ D + P+++ +S +GK I + +K++D S
Sbjct: 193 IDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 227
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 638
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 66 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 125
Query: 639 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 698
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 126 LIVSGSFD-ESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 172
Query: 699 CKSGHVKVFDTST 711
G +++DT++
Sbjct: 173 SYDGLCRIWDTAS 185
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 556 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQL 674
K L + HS V+ + F+ D + + S ++G +++ + L
Sbjct: 137 KTGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Query: 675 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710
+ D + P+++ +S +GK I + +K++D S
Sbjct: 188 IDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 638
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 639 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 698
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 121 LIVSGSFD-ESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 167
Query: 699 CKSGHVKVFDTST 711
G +++DT++
Sbjct: 168 SYDGLCRIWDTAS 180
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 556 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL-SIHEGQIDVYEAPTLNHTSQL 674
K L + HS V+ + F+ D ++ S ++G +++ + L
Sbjct: 140 KTGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 675 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710
+ D + P+++ +S +GK I + +K++D S
Sbjct: 191 IDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 638
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 639 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 698
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 124 LIVSGSFD-ESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 170
Query: 699 CKSGHVKVFDTST 711
G +++DT++
Sbjct: 171 SYDGLCRIWDTAS 183
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 556 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQL 674
K L + HS V+ + F+ D + + S ++G +++ + L
Sbjct: 140 KTGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 675 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710
+ D + P+++ +S +GK I + +K++D S
Sbjct: 191 IDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 638
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 639 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 698
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 124 LIVSGSFD-ESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 170
Query: 699 CKSGHVKVFDTST 711
G +++DT++
Sbjct: 171 SYDGLCRIWDTAS 183
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 556 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQL 674
K L + HS V+ + F+ D + + S ++G +++ + L
Sbjct: 143 KTGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Query: 675 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710
+ D + P+++ +S +GK I + +K++D S
Sbjct: 194 IDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 638
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 639 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 698
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 127 LIVSGSFD-ESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 173
Query: 699 CKSGHVKVFDTST 711
G +++DT++
Sbjct: 174 SYDGLCRIWDTAS 186
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 577 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615
KT+ LKGH N++ C+ + +VSS D ++ VWD+
Sbjct: 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDS 93
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 25/171 (14%)
Query: 447 LIYSHSGDFLVALTQTATHKLWKWQSNK--QSLEEENVNMESQLYQPSSKLVMTNDIAAD 504
L S +G+ V+ +W +S + Q+ E ++ S Y PS D A
Sbjct: 204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPS------GDAFAS 257
Query: 505 PKDSISC--FALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFG 562
D +C + LR +++I+S E+ A+ + F L + LFA G
Sbjct: 258 GSDDATCRLYDLRADR-------EVAIYSKESIIFGASSVD-------FSLSGRLLFA-G 302
Query: 563 FDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW 613
++D +I V + L GH+NR++ L S S D L VW
Sbjct: 303 YNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 88/225 (39%), Gaps = 50/225 (22%)
Query: 544 PPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 601
P A Y QD A D ++ V T + +K H++ + C A+S + +
Sbjct: 620 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYI 679
Query: 602 VSSGADAQLCVWDAVGWKKLCSKFLHSFQ----------------TG------------- 632
+ AD ++ +WD+ K + + HS Q TG
Sbjct: 680 ATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ 739
Query: 633 ------LVPETTIVNHIQFHPDQIHLLSIH-EGQIDVYEAPTLNH-----------TSQL 674
+ T VNH +F PD L S +G + +++ + N +S+
Sbjct: 740 KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSED 799
Query: 675 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 719
P+ +++ + ++S DG I V+ K+ V +FD T L +I+
Sbjct: 800 PPEDVEVIVKCCSWSADGDKIIVAAKN-KVLLFDIHTSGLLAEIH 843
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%)
Query: 581 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 640
+LKGH + C A+SL +L + + ++ +W+ + L S S + G V
Sbjct: 1129 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWV 1188
Query: 641 NHIQFHPDQIHLLS 654
+ F PD L+S
Sbjct: 1189 TDVCFSPDSKTLVS 1202
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 88/225 (39%), Gaps = 50/225 (22%)
Query: 544 PPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 601
P A Y QD A D ++ V T + +K H++ + C A+S + +
Sbjct: 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYI 672
Query: 602 VSSGADAQLCVWDAVGWKKLCSKFLHSFQ----------------TG------------- 632
+ AD ++ +WD+ K + + HS Q TG
Sbjct: 673 ATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ 732
Query: 633 ------LVPETTIVNHIQFHPDQIHLLSIH-EGQIDVYEAPTLNH-----------TSQL 674
+ T VNH +F PD L S +G + +++ + N +S+
Sbjct: 733 KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSED 792
Query: 675 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 719
P+ +++ + ++S DG I V+ K+ V +FD T L +I+
Sbjct: 793 PPEDVEVIVKCCSWSADGDKIIVAAKN-KVLLFDIHTSGLLAEIH 836
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%)
Query: 581 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 640
+LKGH + C A+SL +L + + ++ +W+ + L S S + G V
Sbjct: 1122 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWV 1181
Query: 641 NHIQFHPDQIHLLS 654
+ F PD L+S
Sbjct: 1182 TDVCFSPDSKTLVS 1195
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/160 (18%), Positives = 63/160 (39%), Gaps = 27/160 (16%)
Query: 565 DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 624
D ++ V K ++ L GH ++ +A S ++ S G D + +WD KKL S
Sbjct: 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS- 598
Query: 625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVY-----------------EAPT 667
+ ++++ + F P++ L + E I ++ EA
Sbjct: 599 ---------LEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEK 649
Query: 668 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF 707
+++ + + T +S DG ++ G ++V+
Sbjct: 650 ADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 58/300 (19%), Positives = 118/300 (39%), Gaps = 53/300 (17%)
Query: 428 SECRTLLLPDNSFGGR---VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE--EENV 482
SEC + LPD G V + S++G+F V+ + + +LW Q+ + +
Sbjct: 52 SEC-SYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTK 110
Query: 483 NMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFA 542
++ S + P ++ + ++ +++ + ++G E TL+ A
Sbjct: 111 DVLSVAFSPDNRQI----VSGGRDNALRVWNVKG----------------ECMHTLSRGA 150
Query: 543 NPPPIAT--YFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 600
+ ++ + L + G D+ + V T + LKGH N +T + S ++
Sbjct: 151 HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSL 210
Query: 601 LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQI 660
SS D +WD + L S P +N I F P++ + + E I
Sbjct: 211 CASSDKDGVARLWDLTKGEAL------SEMAAGAP----INQICFSPNRYWMCAATEKGI 260
Query: 661 DVYE----------APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 710
+++ AP + ++VP+ + + +S DG +Y ++V+ S
Sbjct: 261 RIFDLENKDIIVELAPEHQGSKKIVPECVSI-----AWSADGSTLYSGYTDNVIRVWGVS 315
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 562 GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 621
G DD I V+ KK +L GH + L Y+ +LVS D + VWD KK
Sbjct: 138 GADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI---KKG 193
Query: 622 C 622
C
Sbjct: 194 C 194
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 562 GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 621
G DD I V+ KK +L GH + L Y+ +LVS D + VWD KK
Sbjct: 138 GADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI---KKG 193
Query: 622 C 622
C
Sbjct: 194 C 194
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 13/165 (7%)
Query: 554 LPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW 613
+ D F +I V+ K KL GH I+ L ++ + +L+S+ D L +W
Sbjct: 215 VDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274
Query: 614 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQ 673
+ HS +IV+ D++ S+ +G + ++ +L +
Sbjct: 275 HGGNGNSQNCFYGHS--------QSIVSASWVGDDKVISCSM-DGSVRLW---SLKQNTL 322
Query: 674 LVPDKMD-LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ 717
L +D +PI S DG+ V+ G V V+D L + +
Sbjct: 323 LALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSR 367
>pdb|1JJU|B Chain B, Structure Of A Quinohemoprotein Amine Dehydrogenase With A
Unique Redox Cofactor And Highly Unusual Crosslinking
pdb|1PBY|B Chain B, Structure Of The Phenylhydrazine Adduct Of The
Quinohemoprotein Amine Dehydrogenase From Paracoccus
Denitrificans At 1.7 A Resolution
Length = 337
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 678 KMDLPITY--ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 733
++ LP +Y S DG +++ G + +D TLE + Q++L PG S+ L
Sbjct: 275 RVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL-----PGNASMSL 327
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 582 LKGHQNRITCLAY-SLSLNVLVSSGADAQLCVWD 614
L+GH R+ +A+ + NVL+S+G D + VWD
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWD 160
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL-CSKFLHSFQTGLVPETTIV 640
L+GH+N + +A++ S N+L + D + VW+ + C L+S T V
Sbjct: 101 LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS-------HTQDV 153
Query: 641 NHIQFHPDQIHLLS 654
H+ +HP Q L S
Sbjct: 154 KHVVWHPSQELLAS 167
>pdb|2PY6|A Chain A, Crystal Structure Of Methyltransferase Fkbm (Yp_546752.1)
From Methylobacillus Flagellatus Kt At 2.20 A Resolution
Length = 409
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 17/131 (12%)
Query: 3 GSKMCIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFFNVHRFG-EIVMNGEWEKA 61
G K D+ TH I + NF+++++A + + + V +G +IV N
Sbjct: 124 GPKRFFDQICRTHGIPHL-------NFEQAVRAFGLQGNVDYRVDDWGADIVRN-----I 171
Query: 62 EKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHE--RTEADSIFRKDLKVFSVSQNRI 119
+ + +L D + ++ L H CE HE R + FR L FS S+ +
Sbjct: 172 PAFQTLAQRLADDYSVQTLYAVLNFHLTCEPEYYHEVERPYSTLYFRSGLLRFSDSEKXV 231
Query: 120 DC--ELAELLA 128
DC + E LA
Sbjct: 232 DCGASIGESLA 242
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 582 LKGHQNRITCLAY-SLSLNVLVSSGADAQLCVWD 614
L+GH R+ +A+ + NVL+S+G D + VWD
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD 160
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 16/149 (10%)
Query: 488 LYQPSSKLVMTNDIAADPKDSISCF---ALRGSHLFSASGGKISIFSLETFQTLATFANP 544
L + K+ + DP + + + ALR + ++ A+GG+ L + FAN
Sbjct: 522 LDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANK 581
Query: 545 PPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS 604
A F+LL ++ F D ++ + +++L IT L +L L
Sbjct: 582 LYNAARFVLLSREGFQAKEDTPTL-----ADRFMRSRLSRGVEEITALYEALDL------ 630
Query: 605 GADAQLCVWDAVGWKKLCSKFLHSFQTGL 633
A A V++ V W + C +L + + L
Sbjct: 631 -AQAAREVYELV-WSEFCDWYLEAAKPAL 657
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/186 (19%), Positives = 74/186 (39%), Gaps = 48/186 (25%)
Query: 581 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL-----------CSKFLHS- 628
++K H++ + C A+S + + D ++ +W+++ + + C F +S
Sbjct: 658 EIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSS 717
Query: 629 ----FQTG-------------------LVPETTIVNHIQFHPDQIHLLSIH-EGQIDVYE 664
TG + T VNH +F PD L S +G + +++
Sbjct: 718 HHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
Query: 665 APTLNHTSQL-----------VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 713
A + N + + M++ + ++S DG I V+ K+ + +FD T
Sbjct: 778 ATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKN-KIFLFDIHTSG 836
Query: 714 LRCQIN 719
L +I+
Sbjct: 837 LLGEIH 842
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 577 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615
+T+ L+GH +I + + +LVS+ D +L +WD+
Sbjct: 57 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDS 95
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 577 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615
+T+ L+GH +I + + +LVS+ D +L +WD+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDS 84
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 577 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615
+T+ L+GH +I + + +LVS+ D +L +WD+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDS 84
>pdb|1FWY|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
pdb|1FWY|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
pdb|1FXJ|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
pdb|1FXJ|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
Length = 331
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 31/103 (30%)
Query: 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVM 497
N G V L+Y H GD L KQ+L+++N+N Q Q + M
Sbjct: 44 NELGAAHVHLVYGHGGDLL-----------------KQALKDDNLNWVLQAEQLGTGHAM 86
Query: 498 TNDIA--ADPKDSISCFALRGSHLFSASGGKISIFSLETFQTL 538
AD +D + + G + + S+ET Q L
Sbjct: 87 QQAAPFFADDEDILMLY------------GDVPLISVETLQRL 117
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 562 GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 621
G D++I + T + K L GH + CL Y V+++ +D+ + VWD + L
Sbjct: 149 GLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML 206
Query: 622 ------CSKFLH-SFQTGLV 634
C LH F G++
Sbjct: 207 NTLIHHCEAVLHLRFNNGMM 226
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 575 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 617
T T + GHQ+ + +A+S ++S+GA+ ++ +W+ +G
Sbjct: 107 TGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG 149
>pdb|1HV9|A Chain A, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|1HV9|B Chain B, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|2OI5|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac And Acetyl-Coa
pdb|2OI5|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac And Acetyl-Coa
pdb|2OI6|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac, Coa And Glcn-1-Po4
pdb|2OI6|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac, Coa And Glcn-1-Po4
pdb|2OI7|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac, Desulpho-Coa And
Glcnac-1-Po4
pdb|2OI7|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac, Desulpho-Coa And
Glcnac-1-Po4
Length = 456
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 31/103 (30%)
Query: 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVM 497
N G V L+Y H GD L KQ+L+++N+N Q Q + M
Sbjct: 44 NELGAAHVHLVYGHGGDLL-----------------KQALKDDNLNWVLQAEQLGTGHAM 86
Query: 498 TNDIA--ADPKDSISCFALRGSHLFSASGGKISIFSLETFQTL 538
AD +D + + G + + S+ET Q L
Sbjct: 87 QQAAPFFADDEDILMLY------------GDVPLISVETLQRL 117
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 627
L+GH ++ L ++ N +VS+ D +L VW+A+ +K + LH
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLH 107
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 558 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW 613
+ GF + +++ T A+LKGH +R+ L S + S+ AD L +W
Sbjct: 347 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 558 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW 613
+ GF + +++ T A+LKGH +R+ L S + S+ AD L +W
Sbjct: 336 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 577 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615
+T+ L+GH +I + + +L+S+ D +L +WD+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDS 84
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 577 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615
+T+ L+GH +I + + +L+S+ D +L +WD+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDS 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,021,046
Number of Sequences: 62578
Number of extensions: 879278
Number of successful extensions: 2487
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2276
Number of HSP's gapped (non-prelim): 170
length of query: 790
length of database: 14,973,337
effective HSP length: 107
effective length of query: 683
effective length of database: 8,277,491
effective search space: 5653526353
effective search space used: 5653526353
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)